Query 010765
Match_columns 502
No_of_seqs 393 out of 3033
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:18:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1298 Squalene monooxygenase 100.0 3.1E-89 6.8E-94 645.7 43.7 489 4-499 2-509 (509)
2 PLN02985 squalene monooxygenas 100.0 2.2E-74 4.9E-79 603.5 51.5 453 50-502 39-512 (514)
3 PTZ00367 squalene epoxidase; P 100.0 1.1E-62 2.3E-67 517.4 46.8 424 53-489 32-538 (567)
4 PF08491 SE: Squalene epoxidas 100.0 2.9E-49 6.3E-54 369.6 28.1 272 188-460 2-276 (276)
5 PRK06126 hypothetical protein; 100.0 6E-46 1.3E-50 396.2 31.6 391 50-455 3-478 (545)
6 COG0654 UbiH 2-polyprenyl-6-me 100.0 4.7E-43 1E-47 358.1 32.7 347 54-414 2-372 (387)
7 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.8E-43 3.9E-48 376.0 29.3 387 52-453 8-445 (538)
8 PRK08132 FAD-dependent oxidore 100.0 3.9E-43 8.4E-48 374.3 29.7 386 52-454 21-461 (547)
9 PRK08013 oxidoreductase; Provi 100.0 5.8E-43 1.2E-47 359.4 29.7 346 54-413 3-378 (400)
10 PRK08244 hypothetical protein; 100.0 1.4E-42 3.1E-47 365.8 29.5 378 54-454 2-427 (493)
11 PRK08850 2-octaprenyl-6-methox 100.0 8.8E-42 1.9E-46 351.4 31.7 361 53-427 3-392 (405)
12 PRK06184 hypothetical protein; 100.0 7.6E-42 1.6E-46 360.9 28.6 378 53-453 2-421 (502)
13 TIGR01989 COQ6 Ubiquinone bios 100.0 1.3E-40 2.8E-45 345.4 31.9 352 55-411 1-427 (437)
14 PRK06834 hypothetical protein; 100.0 1.5E-40 3.2E-45 347.6 32.5 364 54-440 3-392 (488)
15 PRK07364 2-octaprenyl-6-methox 100.0 2.6E-40 5.7E-45 341.9 32.7 352 50-412 14-389 (415)
16 PRK06617 2-octaprenyl-6-methox 100.0 3.9E-40 8.4E-45 335.4 33.4 331 55-413 2-359 (374)
17 PRK05714 2-octaprenyl-3-methyl 100.0 2.1E-40 4.6E-45 341.3 31.9 349 54-417 2-385 (405)
18 PRK08294 phenol 2-monooxygenas 100.0 3.3E-40 7.2E-45 354.0 33.0 332 52-394 30-415 (634)
19 PRK07190 hypothetical protein; 100.0 7E-40 1.5E-44 342.2 32.9 321 51-391 2-347 (487)
20 PRK08849 2-octaprenyl-3-methyl 100.0 1.3E-39 2.9E-44 332.7 33.8 340 54-414 3-371 (384)
21 PRK08773 2-octaprenyl-3-methyl 100.0 7.1E-40 1.5E-44 336.0 31.1 346 52-412 4-377 (392)
22 PRK07045 putative monooxygenas 100.0 4.8E-39 1E-43 329.4 35.7 342 52-406 3-372 (388)
23 PRK06185 hypothetical protein; 100.0 4.3E-39 9.4E-44 331.9 33.2 355 51-413 3-380 (407)
24 PRK07494 2-octaprenyl-6-methox 100.0 2.1E-39 4.6E-44 332.1 30.3 345 50-412 3-372 (388)
25 PRK06996 hypothetical protein; 100.0 7.7E-39 1.7E-43 328.6 31.8 343 50-411 7-379 (398)
26 PRK08020 ubiF 2-octaprenyl-3-m 100.0 7.9E-39 1.7E-43 328.2 31.7 347 51-413 2-377 (391)
27 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.6E-39 1.2E-43 328.7 30.4 341 56-410 1-369 (385)
28 PRK09126 hypothetical protein; 100.0 2E-39 4.4E-44 332.8 26.6 345 53-411 2-374 (392)
29 TIGR01984 UbiH 2-polyprenyl-6- 100.0 3.8E-39 8.3E-44 329.6 28.0 339 56-411 1-367 (382)
30 PRK07333 2-octaprenyl-6-methox 100.0 9.4E-39 2E-43 329.1 28.5 345 55-414 2-377 (403)
31 PRK08243 4-hydroxybenzoate 3-m 100.0 6E-38 1.3E-42 321.4 33.1 340 54-410 2-371 (392)
32 PRK06753 hypothetical protein; 100.0 3.2E-37 7E-42 314.3 34.8 333 56-410 2-356 (373)
33 PRK07588 hypothetical protein; 100.0 2.3E-37 5E-42 317.3 33.2 341 55-411 1-368 (391)
34 PRK05732 2-octaprenyl-6-methox 100.0 1.1E-37 2.4E-42 320.2 29.0 346 53-412 2-377 (395)
35 PRK06847 hypothetical protein; 100.0 8.8E-37 1.9E-41 311.4 35.2 343 54-410 4-372 (375)
36 PRK07608 ubiquinone biosynthes 100.0 6.7E-37 1.5E-41 313.7 31.6 343 53-411 4-373 (388)
37 PF01494 FAD_binding_3: FAD bi 100.0 7.6E-38 1.6E-42 316.1 22.3 320 54-383 1-355 (356)
38 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.8E-36 6.1E-41 308.3 33.3 340 54-409 2-370 (390)
39 PRK06475 salicylate hydroxylas 100.0 3.3E-36 7.2E-41 309.4 33.9 338 55-408 3-375 (400)
40 PRK05868 hypothetical protein; 100.0 3.7E-35 8.1E-40 298.0 32.7 335 55-406 2-366 (372)
41 PRK08163 salicylate hydroxylas 100.0 6.3E-35 1.4E-39 299.9 33.5 336 53-407 3-370 (396)
42 PRK07538 hypothetical protein; 100.0 1E-34 2.2E-39 299.6 33.4 318 55-386 1-361 (413)
43 PRK07236 hypothetical protein; 100.0 8.9E-35 1.9E-39 297.5 31.7 319 52-393 4-377 (386)
44 TIGR03219 salicylate_mono sali 100.0 5.2E-34 1.1E-38 294.5 28.8 323 56-394 2-376 (414)
45 PLN02927 antheraxanthin epoxid 100.0 8.1E-33 1.8E-37 292.5 34.8 329 51-390 78-445 (668)
46 PLN00093 geranylgeranyl diphos 100.0 6.8E-31 1.5E-35 271.5 31.9 324 50-393 35-386 (450)
47 TIGR02023 BchP-ChlP geranylger 100.0 3.8E-29 8.3E-34 255.9 35.0 312 55-393 1-337 (388)
48 TIGR02028 ChlP geranylgeranyl 100.0 2.2E-29 4.8E-34 257.8 31.5 330 55-405 1-358 (398)
49 KOG2614 Kynurenine 3-monooxyge 100.0 1.5E-30 3.3E-35 252.4 19.7 319 54-389 2-354 (420)
50 TIGR02032 GG-red-SF geranylger 100.0 4.7E-28 1E-32 238.4 28.7 273 55-350 1-295 (295)
51 COG0644 FixC Dehydrogenases (f 100.0 2E-27 4.3E-32 243.5 32.1 302 53-377 2-325 (396)
52 PRK08255 salicylyl-CoA 5-hydro 100.0 8.1E-28 1.8E-32 264.2 23.6 302 56-393 2-341 (765)
53 PRK11445 putative oxidoreducta 99.9 1.3E-25 2.7E-30 226.7 27.5 292 55-377 2-317 (351)
54 KOG3855 Monooxygenase involved 99.9 4.4E-26 9.5E-31 219.5 18.8 340 52-394 34-448 (481)
55 PRK10015 oxidoreductase; Provi 99.9 1.7E-24 3.7E-29 223.5 32.0 307 52-376 3-355 (429)
56 TIGR01790 carotene-cycl lycope 99.9 4.2E-24 9E-29 219.0 31.2 301 56-379 1-321 (388)
57 PRK10157 putative oxidoreducta 99.9 1E-23 2.2E-28 217.8 30.4 306 52-375 3-354 (428)
58 PLN02697 lycopene epsilon cycl 99.9 8E-22 1.7E-26 206.0 35.5 301 52-378 106-441 (529)
59 TIGR01789 lycopene_cycl lycope 99.9 2E-21 4.4E-26 196.6 28.8 287 56-384 1-314 (370)
60 PF04820 Trp_halogenase: Trypt 99.9 3.3E-22 7.1E-27 207.1 22.3 317 56-400 1-394 (454)
61 PLN02463 lycopene beta cyclase 99.9 1.7E-20 3.8E-25 193.1 32.4 277 52-353 26-331 (447)
62 PF05834 Lycopene_cycl: Lycope 99.9 2E-19 4.3E-24 182.8 30.1 269 56-352 1-290 (374)
63 PRK04176 ribulose-1,5-biphosph 99.5 1.1E-13 2.4E-18 132.7 14.3 148 51-207 22-181 (257)
64 TIGR00292 thiazole biosynthesi 99.5 2.8E-13 6.1E-18 129.5 13.0 144 52-206 19-177 (254)
65 KOG2415 Electron transfer flav 99.5 5.1E-12 1.1E-16 122.6 21.2 285 52-352 74-420 (621)
66 COG1635 THI4 Ribulose 1,5-bisp 99.4 3.2E-12 7E-17 114.4 12.8 132 52-205 28-184 (262)
67 PF01946 Thi4: Thi4 family; PD 99.4 1.2E-12 2.6E-17 118.1 9.5 142 52-204 15-170 (230)
68 PRK01747 mnmC bifunctional tRN 99.3 6.3E-11 1.4E-15 129.5 21.1 173 21-200 222-464 (662)
69 PRK06481 fumarate reductase fl 99.3 7.3E-11 1.6E-15 124.8 19.5 148 51-205 58-257 (506)
70 PRK05192 tRNA uridine 5-carbox 99.3 1.5E-11 3.3E-16 129.1 13.2 140 53-200 3-158 (618)
71 PRK13369 glycerol-3-phosphate 99.3 5E-10 1.1E-14 118.5 24.4 68 134-203 151-220 (502)
72 PLN02464 glycerol-3-phosphate 99.3 5E-10 1.1E-14 120.9 24.5 73 134-207 228-305 (627)
73 PF01266 DAO: FAD dependent ox 99.3 2.1E-11 4.6E-16 123.0 13.2 64 132-201 141-205 (358)
74 COG2081 Predicted flavoprotein 99.3 4.2E-11 9E-16 117.3 13.3 142 53-200 2-168 (408)
75 TIGR01377 soxA_mon sarcosine o 99.3 1.2E-09 2.6E-14 111.7 24.2 71 133-210 140-212 (380)
76 TIGR01373 soxB sarcosine oxida 99.3 4.5E-10 9.6E-15 116.0 20.7 110 134-252 179-291 (407)
77 PF12831 FAD_oxidored: FAD dep 99.3 4.3E-12 9.3E-17 131.4 5.0 142 56-207 1-157 (428)
78 COG0578 GlpA Glycerol-3-phosph 99.2 1.1E-09 2.3E-14 113.1 21.8 195 52-250 10-281 (532)
79 PRK12266 glpD glycerol-3-phosp 99.2 1.2E-09 2.7E-14 115.5 22.9 64 135-200 152-217 (508)
80 PF01134 GIDA: Glucose inhibit 99.2 3.3E-11 7.2E-16 120.3 9.9 133 56-199 1-152 (392)
81 PRK11728 hydroxyglutarate oxid 99.2 4.4E-10 9.5E-15 115.4 18.6 69 133-208 144-214 (393)
82 PLN02661 Putative thiazole syn 99.2 2.4E-10 5.2E-15 112.4 14.1 142 52-201 90-246 (357)
83 PF03486 HI0933_like: HI0933-l 99.2 1.2E-10 2.6E-15 118.7 12.4 138 55-200 1-167 (409)
84 KOG0042 Glycerol-3-phosphate d 99.2 8.4E-10 1.8E-14 110.8 17.6 157 48-205 61-294 (680)
85 PRK09231 fumarate reductase fl 99.2 2.8E-10 6.1E-15 122.1 15.5 143 52-202 2-199 (582)
86 PRK06069 sdhA succinate dehydr 99.2 4.8E-10 1E-14 120.5 16.1 149 50-203 1-204 (577)
87 PF00890 FAD_binding_2: FAD bi 99.2 3.4E-10 7.4E-15 117.2 14.4 63 137-200 140-204 (417)
88 TIGR00551 nadB L-aspartate oxi 99.2 4.7E-10 1E-14 118.3 15.6 145 54-203 2-193 (488)
89 PRK11259 solA N-methyltryptoph 99.2 5.4E-09 1.2E-13 106.7 22.7 60 134-200 145-205 (376)
90 TIGR01176 fum_red_Fp fumarate 99.2 6.2E-10 1.3E-14 119.2 16.1 141 53-201 2-197 (580)
91 TIGR01812 sdhA_frdA_Gneg succi 99.2 5.3E-10 1.1E-14 120.2 15.7 64 139-203 130-195 (566)
92 PRK11101 glpA sn-glycerol-3-ph 99.1 9.5E-10 2.1E-14 117.3 16.6 155 52-207 4-220 (546)
93 PRK06452 sdhA succinate dehydr 99.1 6.4E-10 1.4E-14 119.0 15.4 147 51-201 2-200 (566)
94 PRK12409 D-amino acid dehydrog 99.1 1.1E-08 2.4E-13 105.6 23.6 70 135-206 194-266 (410)
95 PRK00711 D-amino acid dehydrog 99.1 1.3E-08 2.7E-13 105.5 23.8 60 135-200 198-258 (416)
96 PRK08274 tricarballylate dehyd 99.1 1.1E-09 2.3E-14 115.2 15.9 67 138-205 131-198 (466)
97 PRK07804 L-aspartate oxidase; 99.1 1.2E-09 2.5E-14 116.5 15.2 143 51-202 13-213 (541)
98 PRK05945 sdhA succinate dehydr 99.1 1.4E-09 3.1E-14 116.7 15.6 63 138-201 135-199 (575)
99 COG0579 Predicted dehydrogenas 99.1 1.4E-09 3.1E-14 109.9 14.4 153 53-209 2-222 (429)
100 PRK07057 sdhA succinate dehydr 99.1 2.1E-09 4.6E-14 115.6 16.4 148 50-201 8-213 (591)
101 PRK06175 L-aspartate oxidase; 99.1 1.7E-09 3.6E-14 112.2 14.7 140 53-201 3-191 (433)
102 PRK09077 L-aspartate oxidase; 99.1 2.1E-09 4.5E-14 114.5 15.7 148 52-203 6-211 (536)
103 TIGR01813 flavo_cyto_c flavocy 99.1 2.4E-09 5.2E-14 111.7 15.6 64 138-202 130-195 (439)
104 PRK07573 sdhA succinate dehydr 99.1 2.5E-09 5.4E-14 115.8 15.8 59 142-201 174-234 (640)
105 PRK09078 sdhA succinate dehydr 99.1 2.6E-09 5.6E-14 115.0 15.8 62 139-201 150-214 (598)
106 PRK06854 adenylylsulfate reduc 99.1 2.5E-09 5.3E-14 115.3 15.5 141 52-200 9-196 (608)
107 PTZ00139 Succinate dehydrogena 99.1 3.2E-09 6.8E-14 114.6 16.1 146 52-201 27-231 (617)
108 PRK07803 sdhA succinate dehydr 99.1 3.4E-09 7.3E-14 114.7 16.2 146 51-201 5-215 (626)
109 PLN00128 Succinate dehydrogena 99.0 2.7E-09 5.8E-14 115.2 15.2 62 139-201 188-252 (635)
110 PRK07121 hypothetical protein; 99.0 5.4E-09 1.2E-13 110.5 16.9 64 138-203 177-243 (492)
111 PRK08626 fumarate reductase fl 99.0 3.5E-09 7.6E-14 114.9 15.0 62 139-201 159-222 (657)
112 KOG2820 FAD-dependent oxidored 99.0 1.3E-08 2.7E-13 97.2 16.2 155 52-209 5-224 (399)
113 PRK06263 sdhA succinate dehydr 99.0 4.3E-09 9.4E-14 112.4 14.8 62 138-200 134-198 (543)
114 PRK08958 sdhA succinate dehydr 99.0 5.2E-09 1.1E-13 112.4 15.2 62 139-201 144-208 (588)
115 TIGR00136 gidA glucose-inhibit 99.0 5.1E-09 1.1E-13 110.1 14.5 143 55-205 1-160 (617)
116 PRK08205 sdhA succinate dehydr 99.0 7E-09 1.5E-13 111.5 15.0 63 138-201 140-208 (583)
117 PLN02815 L-aspartate oxidase 99.0 6.4E-09 1.4E-13 111.3 14.4 143 52-201 27-224 (594)
118 PRK08071 L-aspartate oxidase; 99.0 7E-09 1.5E-13 109.8 14.2 139 54-201 3-192 (510)
119 PRK08641 sdhA succinate dehydr 99.0 1E-08 2.2E-13 110.3 15.5 63 139-201 134-202 (589)
120 PLN02172 flavin-containing mon 99.0 1.2E-08 2.6E-13 106.3 15.1 146 53-200 9-174 (461)
121 PTZ00383 malate:quinone oxidor 99.0 1.1E-08 2.3E-13 107.1 14.8 70 133-207 206-282 (497)
122 TIGR03329 Phn_aa_oxid putative 99.0 5.8E-09 1.3E-13 109.3 12.7 60 133-200 178-238 (460)
123 PRK07395 L-aspartate oxidase; 98.9 8.9E-09 1.9E-13 109.7 14.2 140 52-200 7-198 (553)
124 PRK08275 putative oxidoreducta 98.9 1.4E-08 2.9E-13 108.8 15.3 62 139-201 138-202 (554)
125 PRK05257 malate:quinone oxidor 98.9 7.2E-09 1.6E-13 108.7 12.8 77 132-208 177-256 (494)
126 PRK13339 malate:quinone oxidor 98.9 1.6E-08 3.5E-13 105.5 15.2 78 131-209 177-258 (497)
127 COG0665 DadA Glycine/D-amino a 98.9 2E-07 4.4E-12 95.4 22.7 63 133-201 151-214 (387)
128 TIGR01320 mal_quin_oxido malat 98.9 2.1E-08 4.5E-13 105.1 15.0 88 133-221 173-265 (483)
129 PRK12844 3-ketosteroid-delta-1 98.9 4.1E-08 8.9E-13 105.0 17.4 63 139-203 209-273 (557)
130 TIGR01292 TRX_reduct thioredox 98.9 2.3E-08 5.1E-13 98.4 14.4 113 55-200 1-113 (300)
131 PRK07843 3-ketosteroid-delta-1 98.9 4.8E-08 1E-12 104.6 17.4 63 139-203 209-273 (557)
132 PRK07512 L-aspartate oxidase; 98.9 2E-08 4.3E-13 106.4 14.3 62 139-201 137-199 (513)
133 PRK12845 3-ketosteroid-delta-1 98.9 4.6E-08 1E-12 104.5 17.2 63 140-204 219-283 (564)
134 PF13738 Pyr_redox_3: Pyridine 98.9 1.4E-09 3.1E-14 100.8 4.7 133 58-200 1-139 (203)
135 COG0492 TrxB Thioredoxin reduc 98.9 2.4E-08 5.3E-13 97.7 13.5 114 53-200 2-116 (305)
136 PRK12842 putative succinate de 98.9 4.9E-08 1.1E-12 105.0 17.0 61 139-201 215-277 (574)
137 PRK12834 putative FAD-binding 98.9 5.2E-08 1.1E-12 104.3 17.1 67 139-205 149-233 (549)
138 TIGR01811 sdhA_Bsu succinate d 98.9 3.1E-08 6.8E-13 106.7 15.3 62 140-201 131-198 (603)
139 PRK12837 3-ketosteroid-delta-1 98.9 4.4E-08 9.5E-13 103.9 16.0 62 139-201 174-237 (513)
140 PRK08401 L-aspartate oxidase; 98.9 1.9E-08 4.1E-13 105.4 12.8 143 55-203 2-179 (466)
141 TIGR03364 HpnW_proposed FAD de 98.8 3.5E-08 7.5E-13 100.3 13.8 58 133-200 140-198 (365)
142 PRK12839 hypothetical protein; 98.8 8.6E-08 1.9E-12 102.7 17.3 63 137-200 213-277 (572)
143 PRK06134 putative FAD-binding 98.8 9.9E-08 2.1E-12 102.7 17.2 60 139-200 218-279 (581)
144 PRK12835 3-ketosteroid-delta-1 98.8 5.8E-08 1.3E-12 104.3 15.4 61 140-202 215-278 (584)
145 PRK15317 alkyl hydroperoxide r 98.8 5.9E-08 1.3E-12 103.1 15.2 113 52-199 209-322 (517)
146 PTZ00306 NADH-dependent fumara 98.8 5.7E-08 1.2E-12 112.1 15.7 155 47-201 402-622 (1167)
147 TIGR00275 flavoprotein, HI0933 98.8 6E-08 1.3E-12 99.6 14.2 134 58-199 1-160 (400)
148 PRK12843 putative FAD-binding 98.8 1.5E-07 3.2E-12 101.3 17.4 65 139-205 222-288 (578)
149 TIGR02734 crtI_fam phytoene de 98.8 3.3E-06 7.1E-11 89.7 26.2 63 138-205 219-282 (502)
150 COG2072 TrkA Predicted flavopr 98.8 9E-08 1.9E-12 99.3 13.5 137 51-199 5-144 (443)
151 TIGR03140 AhpF alkyl hydropero 98.7 1.2E-07 2.6E-12 100.7 13.8 113 52-199 210-323 (515)
152 TIGR03143 AhpF_homolog putativ 98.7 1.4E-07 3E-12 101.1 14.3 112 54-200 4-115 (555)
153 PRK07233 hypothetical protein; 98.7 1.7E-06 3.7E-11 90.0 21.7 38 56-93 1-38 (434)
154 KOG1399 Flavin-containing mono 98.7 1.2E-07 2.7E-12 97.1 12.6 141 53-199 5-153 (448)
155 PRK13800 putative oxidoreducta 98.7 2.4E-07 5.2E-12 104.5 16.0 144 52-201 11-207 (897)
156 TIGR02061 aprA adenosine phosp 98.7 2.2E-07 4.9E-12 99.7 14.9 61 139-200 127-192 (614)
157 COG0029 NadB Aspartate oxidase 98.7 1E-07 2.2E-12 96.0 10.9 143 56-202 9-199 (518)
158 PRK05249 soluble pyridine nucl 98.7 1.9E-07 4.2E-12 98.0 13.5 135 52-199 3-149 (461)
159 PRK05976 dihydrolipoamide dehy 98.7 1.7E-07 3.7E-12 98.6 13.1 34 53-86 3-36 (472)
160 PRK06467 dihydrolipoamide dehy 98.7 1.4E-07 3.1E-12 99.0 12.1 35 53-87 3-37 (471)
161 PRK08010 pyridine nucleotide-d 98.7 1.2E-07 2.7E-12 98.8 11.4 35 53-87 2-36 (441)
162 COG1053 SdhA Succinate dehydro 98.7 1E-07 2.2E-12 100.9 10.6 149 51-201 3-204 (562)
163 PRK14694 putative mercuric red 98.7 3.2E-07 7E-12 96.4 14.4 38 50-87 2-39 (468)
164 KOG2852 Possible oxidoreductas 98.7 9.7E-08 2.1E-12 89.2 8.8 146 55-200 11-209 (380)
165 PRK06416 dihydrolipoamide dehy 98.6 2.1E-07 4.5E-12 97.7 12.3 35 53-87 3-37 (462)
166 PLN02507 glutathione reductase 98.6 1.2E-07 2.7E-12 100.0 10.2 34 52-85 23-56 (499)
167 PLN02612 phytoene desaturase 98.6 1E-05 2.2E-10 86.8 24.9 38 52-89 91-128 (567)
168 PRK10262 thioredoxin reductase 98.6 5.6E-07 1.2E-11 89.8 14.1 114 52-199 4-117 (321)
169 COG1231 Monoamine oxidase [Ami 98.6 2.7E-06 5.8E-11 85.3 18.3 43 52-94 5-47 (450)
170 PRK06115 dihydrolipoamide dehy 98.6 1.4E-07 3E-12 99.0 9.6 34 54-87 3-36 (466)
171 KOG2853 Possible oxidoreductas 98.6 2.8E-07 6.1E-12 88.0 10.5 73 135-208 240-330 (509)
172 PF06039 Mqo: Malate:quinone o 98.6 5.1E-07 1.1E-11 90.7 12.1 78 131-208 174-254 (488)
173 PRK13977 myosin-cross-reactive 98.6 8.6E-07 1.9E-11 92.8 13.7 61 138-199 226-293 (576)
174 PF00732 GMC_oxred_N: GMC oxid 98.6 1.4E-06 3.1E-11 85.8 14.6 61 140-200 194-259 (296)
175 PRK07251 pyridine nucleotide-d 98.5 4.5E-07 9.7E-12 94.6 11.4 35 53-87 2-36 (438)
176 PRK13748 putative mercuric red 98.5 7.9E-07 1.7E-11 95.8 13.4 34 53-86 97-130 (561)
177 COG3380 Predicted NAD/FAD-depe 98.5 3.7E-07 8E-12 84.9 8.7 38 55-92 2-39 (331)
178 TIGR01424 gluta_reduc_2 glutat 98.5 5.2E-07 1.1E-11 94.2 11.1 33 54-86 2-34 (446)
179 COG0445 GidA Flavin-dependent 98.5 1.6E-07 3.4E-12 95.5 6.6 139 53-199 3-158 (621)
180 PF00743 FMO-like: Flavin-bind 98.5 5.9E-07 1.3E-11 95.0 11.1 135 56-200 3-151 (531)
181 PRK05335 tRNA (uracil-5-)-meth 98.5 1.7E-07 3.6E-12 94.9 6.5 110 55-165 3-126 (436)
182 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 9.3E-07 2E-11 90.1 11.7 102 55-165 1-124 (433)
183 TIGR02730 carot_isom carotene 98.5 8.3E-07 1.8E-11 94.0 11.8 64 138-206 229-293 (493)
184 PF13450 NAD_binding_8: NAD(P) 98.5 1.9E-07 4E-12 70.1 4.8 33 59-91 1-33 (68)
185 PF07992 Pyr_redox_2: Pyridine 98.5 1.9E-07 4.2E-12 86.2 5.9 115 56-200 1-123 (201)
186 PF00070 Pyr_redox: Pyridine n 98.5 2.5E-06 5.3E-11 66.4 11.1 76 56-176 1-77 (80)
187 TIGR02732 zeta_caro_desat caro 98.5 3.4E-05 7.4E-10 81.1 22.8 35 56-90 1-35 (474)
188 PRK06116 glutathione reductase 98.5 1.2E-06 2.6E-11 91.7 11.8 34 53-86 3-36 (450)
189 TIGR02462 pyranose_ox pyranose 98.4 3.6E-06 7.7E-11 88.7 14.8 57 150-206 225-286 (544)
190 KOG2404 Fumarate reductase, fl 98.4 5.2E-07 1.1E-11 85.6 7.7 147 56-205 11-212 (477)
191 TIGR02485 CobZ_N-term precorri 98.4 2.5E-06 5.3E-11 88.8 13.1 63 139-205 124-189 (432)
192 PRK06370 mercuric reductase; V 98.4 2.2E-06 4.7E-11 90.1 12.7 36 52-87 3-38 (463)
193 PRK06327 dihydrolipoamide dehy 98.4 1.6E-06 3.6E-11 91.2 11.5 33 53-85 3-35 (475)
194 PLN02487 zeta-carotene desatur 98.4 5.1E-05 1.1E-09 80.9 22.4 38 53-90 74-111 (569)
195 TIGR01421 gluta_reduc_1 glutat 98.4 2.3E-06 4.9E-11 89.5 12.0 34 54-87 2-35 (450)
196 TIGR01350 lipoamide_DH dihydro 98.4 1.2E-06 2.5E-11 92.1 9.4 33 54-86 1-33 (461)
197 PRK05329 anaerobic glycerol-3- 98.4 8.2E-06 1.8E-10 83.7 15.3 57 139-198 260-317 (422)
198 TIGR01372 soxA sarcosine oxida 98.4 5.9E-06 1.3E-10 94.2 15.0 114 53-199 162-286 (985)
199 PRK14727 putative mercuric red 98.3 5E-06 1.1E-10 87.6 13.2 36 52-87 14-49 (479)
200 PTZ00058 glutathione reductase 98.3 1.1E-06 2.5E-11 93.5 8.2 36 51-86 45-80 (561)
201 PRK07818 dihydrolipoamide dehy 98.3 2.9E-06 6.3E-11 89.2 10.9 33 54-86 4-36 (466)
202 PRK07845 flavoprotein disulfid 98.3 7E-06 1.5E-10 86.2 13.5 129 56-200 3-152 (466)
203 PLN02546 glutathione reductase 98.3 2.1E-06 4.6E-11 91.4 9.6 34 52-85 77-110 (558)
204 PF13454 NAD_binding_9: FAD-NA 98.3 6.3E-06 1.4E-10 73.0 10.3 135 58-197 1-155 (156)
205 KOG2844 Dimethylglycine dehydr 98.3 1.9E-05 4.1E-10 82.0 14.9 62 132-199 181-243 (856)
206 COG3573 Predicted oxidoreducta 98.3 1.4E-05 3.1E-10 76.4 12.9 38 52-89 3-40 (552)
207 PRK09564 coenzyme A disulfide 98.3 5.5E-06 1.2E-10 86.6 11.3 111 56-200 2-116 (444)
208 TIGR03378 glycerol3P_GlpB glyc 98.3 1.1E-05 2.4E-10 81.9 12.9 62 136-200 261-324 (419)
209 COG1233 Phytoene dehydrogenase 98.3 9.8E-07 2.1E-11 92.9 5.5 55 138-197 224-279 (487)
210 COG1148 HdrA Heterodisulfide r 98.2 5.1E-06 1.1E-10 83.2 9.9 70 140-209 416-491 (622)
211 PRK06912 acoL dihydrolipoamide 98.2 9.1E-06 2E-10 85.2 12.1 32 56-87 2-33 (458)
212 TIGR01438 TGR thioredoxin and 98.2 3.9E-06 8.6E-11 88.3 9.3 33 54-86 2-34 (484)
213 TIGR01423 trypano_reduc trypan 98.2 1.2E-05 2.5E-10 84.7 12.7 34 53-86 2-36 (486)
214 PRK13512 coenzyme A disulfide 98.2 7.9E-06 1.7E-10 85.1 11.3 112 56-200 3-118 (438)
215 PRK02106 choline dehydrogenase 98.2 2.8E-05 6.1E-10 83.6 15.5 56 146-201 208-264 (560)
216 PRK06292 dihydrolipoamide dehy 98.2 9.5E-06 2.1E-10 85.2 11.3 34 53-86 2-35 (460)
217 COG3075 GlpB Anaerobic glycero 98.2 1E-05 2.2E-10 77.4 10.1 57 139-198 259-316 (421)
218 PRK12779 putative bifunctional 98.2 7E-06 1.5E-10 92.5 10.7 36 53-88 305-340 (944)
219 PTZ00153 lipoamide dehydrogena 98.2 1.5E-05 3.3E-10 86.2 12.6 35 52-86 114-148 (659)
220 TIGR02053 MerA mercuric reduct 98.2 9.5E-06 2.1E-10 85.3 10.6 33 55-87 1-33 (463)
221 TIGR01810 betA choline dehydro 98.1 2.7E-05 5.8E-10 83.3 13.6 58 143-200 198-257 (532)
222 KOG2665 Predicted FAD-dependen 98.1 6.4E-06 1.4E-10 78.2 7.6 39 50-88 44-84 (453)
223 PTZ00052 thioredoxin reductase 98.1 2E-05 4.3E-10 83.5 12.1 33 54-86 5-37 (499)
224 COG1249 Lpd Pyruvate/2-oxoglut 98.1 1.1E-05 2.4E-10 83.3 9.7 36 52-87 2-37 (454)
225 TIGR01350 lipoamide_DH dihydro 98.1 3.9E-05 8.5E-10 80.6 13.8 102 54-202 170-272 (461)
226 PRK12810 gltD glutamate syntha 98.1 9.6E-05 2.1E-09 77.7 16.6 38 52-89 141-178 (471)
227 PRK04965 NADH:flavorubredoxin 98.1 4.1E-05 8.8E-10 78.2 13.3 105 55-207 142-249 (377)
228 KOG1335 Dihydrolipoamide dehyd 98.1 6.1E-05 1.3E-09 73.5 13.3 68 140-209 254-323 (506)
229 PRK09897 hypothetical protein; 98.1 4E-05 8.6E-10 81.0 13.1 35 55-89 2-38 (534)
230 PRK09853 putative selenate red 98.1 1.9E-05 4.2E-10 88.1 11.2 36 53-88 538-573 (1019)
231 KOG0029 Amine oxidase [Seconda 98.1 4.1E-06 9E-11 87.6 5.6 43 52-94 13-55 (501)
232 PTZ00318 NADH dehydrogenase-li 98.1 4.7E-05 1E-09 79.0 13.4 111 52-200 8-126 (424)
233 PRK11749 dihydropyrimidine deh 98.1 3.1E-05 6.7E-10 81.2 11.7 38 52-89 138-175 (457)
234 PRK07818 dihydrolipoamide dehy 98.0 5.6E-05 1.2E-09 79.5 13.4 102 55-201 173-275 (466)
235 KOG2311 NAD/FAD-utilizing prot 98.0 1.4E-05 3E-10 79.9 7.9 140 52-198 26-185 (679)
236 PRK05249 soluble pyridine nucl 98.0 5.2E-05 1.1E-09 79.6 12.8 100 54-202 175-275 (461)
237 PRK09754 phenylpropionate diox 98.0 3E-05 6.5E-10 79.7 10.5 107 54-200 3-113 (396)
238 COG1249 Lpd Pyruvate/2-oxoglut 98.0 6.6E-05 1.4E-09 77.6 12.7 109 53-209 172-281 (454)
239 PF13434 K_oxygenase: L-lysine 98.0 2.6E-05 5.7E-10 78.1 9.4 151 54-205 2-165 (341)
240 TIGR03169 Nterm_to_SelD pyridi 98.0 3.4E-05 7.4E-10 78.4 9.9 105 56-200 1-108 (364)
241 PRK07208 hypothetical protein; 98.0 8.6E-06 1.9E-10 86.0 5.7 40 52-91 2-41 (479)
242 TIGR02733 desat_CrtD C-3',4' d 98.0 8.7E-06 1.9E-10 86.2 5.6 37 55-91 2-38 (492)
243 PRK06912 acoL dihydrolipoamide 98.0 8.8E-05 1.9E-09 77.8 13.0 99 55-201 171-270 (458)
244 PRK06327 dihydrolipoamide dehy 98.0 0.00013 2.8E-09 76.9 14.3 102 55-201 184-286 (475)
245 PLN02576 protoporphyrinogen ox 98.0 1.1E-05 2.3E-10 85.7 6.2 42 52-93 10-52 (496)
246 PRK06115 dihydrolipoamide dehy 98.0 0.0001 2.2E-09 77.5 13.4 103 54-201 174-278 (466)
247 PRK09754 phenylpropionate diox 98.0 0.0001 2.2E-09 75.8 13.1 98 55-201 145-243 (396)
248 PRK06416 dihydrolipoamide dehy 97.9 9E-05 2E-09 77.9 12.6 100 55-201 173-274 (462)
249 COG1252 Ndh NADH dehydrogenase 97.9 5.8E-05 1.3E-09 76.3 10.2 108 54-200 3-112 (405)
250 COG3634 AhpF Alkyl hydroperoxi 97.9 1.4E-05 3.1E-10 76.8 5.3 120 47-198 204-324 (520)
251 PRK05976 dihydrolipoamide dehy 97.9 0.00015 3.2E-09 76.4 13.6 102 54-201 180-283 (472)
252 PRK11883 protoporphyrinogen ox 97.9 1.1E-05 2.4E-10 84.3 5.0 37 56-92 2-40 (451)
253 PRK15317 alkyl hydroperoxide r 97.9 0.00015 3.2E-09 77.2 13.4 96 55-199 352-449 (517)
254 PLN02268 probable polyamine ox 97.9 1.5E-05 3.2E-10 83.2 5.5 40 55-94 1-40 (435)
255 COG2509 Uncharacterized FAD-de 97.9 9.2E-05 2E-09 74.2 10.5 57 139-200 174-231 (486)
256 COG3349 Uncharacterized conser 97.8 1.6E-05 3.6E-10 81.2 4.8 37 56-92 2-38 (485)
257 KOG0404 Thioredoxin reductase 97.8 0.00013 2.7E-09 66.2 9.8 118 52-198 6-123 (322)
258 PRK06467 dihydrolipoamide dehy 97.8 0.00019 4.1E-09 75.5 12.8 102 55-202 175-277 (471)
259 PRK06370 mercuric reductase; V 97.8 0.00039 8.5E-09 73.0 15.2 102 54-201 171-273 (463)
260 TIGR00562 proto_IX_ox protopor 97.8 1.9E-05 4.1E-10 83.0 5.2 38 55-92 3-44 (462)
261 PRK06116 glutathione reductase 97.8 0.00017 3.7E-09 75.5 12.4 100 54-201 167-267 (450)
262 TIGR03140 AhpF alkyl hydropero 97.8 0.00026 5.7E-09 75.3 13.7 96 55-199 353-450 (515)
263 PLN02785 Protein HOTHEAD 97.8 0.0006 1.3E-08 73.3 16.4 36 52-88 53-88 (587)
264 TIGR02053 MerA mercuric reduct 97.8 0.00022 4.8E-09 74.9 13.0 101 55-201 167-268 (463)
265 PLN02507 glutathione reductase 97.8 0.00025 5.5E-09 75.0 12.9 98 55-201 204-302 (499)
266 PRK12771 putative glutamate sy 97.8 0.00038 8.2E-09 75.0 14.4 38 52-89 135-172 (564)
267 PTZ00363 rab-GDP dissociation 97.8 2.7E-05 5.9E-10 80.5 5.2 40 52-91 2-41 (443)
268 PLN02568 polyamine oxidase 97.8 3.3E-05 7.2E-10 82.1 5.9 42 52-93 3-49 (539)
269 TIGR00031 UDP-GALP_mutase UDP- 97.8 3.3E-05 7.2E-10 78.0 5.5 36 55-90 2-37 (377)
270 PRK12770 putative glutamate sy 97.8 0.0001 2.2E-09 74.6 8.9 35 54-88 18-52 (352)
271 COG1206 Gid NAD(FAD)-utilizing 97.7 7E-05 1.5E-09 71.7 6.9 113 54-166 3-128 (439)
272 PRK07251 pyridine nucleotide-d 97.7 0.0004 8.7E-09 72.4 13.4 98 54-201 157-255 (438)
273 PRK07845 flavoprotein disulfid 97.7 0.00033 7.1E-09 73.7 12.7 99 55-202 178-277 (466)
274 TIGR02731 phytoene_desat phyto 97.7 3.5E-05 7.6E-10 80.7 5.4 36 56-91 1-36 (453)
275 PRK07846 mycothione reductase; 97.7 0.00036 7.8E-09 73.0 12.8 98 54-201 166-264 (451)
276 TIGR01421 gluta_reduc_1 glutat 97.7 0.00032 6.9E-09 73.4 12.4 101 54-201 166-267 (450)
277 PRK07846 mycothione reductase; 97.7 0.00019 4.1E-09 75.1 10.7 32 54-87 1-32 (451)
278 TIGR01424 gluta_reduc_2 glutat 97.7 0.00033 7.2E-09 73.2 12.5 98 55-201 167-265 (446)
279 PRK10262 thioredoxin reductase 97.7 0.00049 1.1E-08 68.6 13.1 101 54-200 146-249 (321)
280 KOG3923 D-aspartate oxidase [A 97.7 0.00058 1.3E-08 64.8 12.3 119 134-278 147-266 (342)
281 PRK06292 dihydrolipoamide dehy 97.7 0.00036 7.8E-09 73.3 12.5 101 54-201 169-270 (460)
282 TIGR01292 TRX_reduct thioredox 97.7 0.00055 1.2E-08 67.2 13.1 96 54-199 141-238 (300)
283 PRK04965 NADH:flavorubredoxin 97.7 0.00021 4.6E-09 73.0 10.4 105 55-200 3-112 (377)
284 TIGR03315 Se_ygfK putative sel 97.7 4.5E-05 9.8E-10 85.6 5.8 36 53-88 536-571 (1012)
285 KOG0685 Flavin-containing amin 97.7 0.00031 6.7E-09 70.9 10.8 43 52-94 19-62 (498)
286 COG0562 Glf UDP-galactopyranos 97.7 6.5E-05 1.4E-09 71.9 5.4 38 54-91 1-38 (374)
287 KOG2960 Protein involved in th 97.7 6.4E-05 1.4E-09 67.5 4.9 105 54-167 76-187 (328)
288 PLN02852 ferredoxin-NADP+ redu 97.6 8.3E-05 1.8E-09 77.7 6.4 39 52-90 24-64 (491)
289 PRK12416 protoporphyrinogen ox 97.6 5.2E-05 1.1E-09 79.7 4.8 38 56-93 3-46 (463)
290 PRK12831 putative oxidoreducta 97.6 8.8E-05 1.9E-09 77.7 6.4 37 52-88 138-174 (464)
291 TIGR02374 nitri_red_nirB nitri 97.6 0.00056 1.2E-08 76.4 12.7 99 55-201 141-240 (785)
292 PRK14694 putative mercuric red 97.6 0.00062 1.3E-08 71.7 12.4 96 55-201 179-275 (468)
293 PTZ00052 thioredoxin reductase 97.6 0.00062 1.3E-08 72.2 12.4 98 55-202 183-281 (499)
294 TIGR01438 TGR thioredoxin and 97.6 0.00062 1.3E-08 71.8 12.3 99 55-201 181-281 (484)
295 PRK08010 pyridine nucleotide-d 97.6 0.00092 2E-08 69.8 13.4 97 55-201 159-256 (441)
296 PLN02676 polyamine oxidase 97.6 8.9E-05 1.9E-09 78.1 5.7 40 53-92 25-65 (487)
297 PRK14727 putative mercuric red 97.6 0.00071 1.5E-08 71.4 12.2 97 55-202 189-286 (479)
298 TIGR02352 thiamin_ThiO glycine 97.6 0.0044 9.6E-08 61.9 17.5 62 133-200 132-194 (337)
299 TIGR01423 trypano_reduc trypan 97.6 0.00076 1.7E-08 71.1 12.3 101 54-202 187-291 (486)
300 PRK14989 nitrite reductase sub 97.6 0.00064 1.4E-08 76.2 12.3 100 55-201 146-247 (847)
301 PTZ00058 glutathione reductase 97.5 0.00081 1.8E-08 71.9 12.4 101 54-201 237-338 (561)
302 TIGR02374 nitri_red_nirB nitri 97.5 0.00035 7.5E-09 78.0 10.0 104 57-200 1-109 (785)
303 TIGR03452 mycothione_red mycot 97.5 0.00095 2.1E-08 69.9 12.7 98 54-201 169-267 (452)
304 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.00097 2.1E-08 69.3 12.6 97 55-201 138-235 (427)
305 TIGR03452 mycothione_red mycot 97.5 0.00093 2E-08 69.9 12.4 32 54-87 2-33 (452)
306 COG1232 HemY Protoporphyrinoge 97.5 9.7E-05 2.1E-09 75.7 4.8 35 56-90 2-38 (444)
307 PLN02328 lysine-specific histo 97.5 0.00013 2.8E-09 80.2 6.0 41 52-92 236-276 (808)
308 PRK14989 nitrite reductase sub 97.5 0.00054 1.2E-08 76.7 11.1 105 55-200 4-114 (847)
309 TIGR01316 gltA glutamate synth 97.5 0.00014 3.1E-09 75.9 5.8 37 52-88 131-167 (449)
310 PRK13512 coenzyme A disulfide 97.5 0.00085 1.8E-08 70.0 11.5 94 55-201 149-243 (438)
311 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.0072 1.6E-07 61.8 18.1 61 133-200 130-191 (381)
312 PRK06567 putative bifunctional 97.5 0.00013 2.8E-09 80.8 5.2 35 53-87 382-416 (1028)
313 COG0446 HcaD Uncharacterized N 97.5 0.001 2.3E-08 68.4 11.8 102 54-200 136-238 (415)
314 PLN02529 lysine-specific histo 97.5 0.00016 3.4E-09 79.0 5.9 38 53-90 159-196 (738)
315 PRK12769 putative oxidoreducta 97.5 0.00015 3.3E-09 79.4 5.6 36 53-88 326-361 (654)
316 PRK09564 coenzyme A disulfide 97.4 0.0015 3.2E-08 68.3 12.8 98 54-200 149-247 (444)
317 COG2907 Predicted NAD/FAD-bind 97.4 0.00073 1.6E-08 65.5 9.2 37 53-90 7-43 (447)
318 PLN02546 glutathione reductase 97.4 0.0013 2.8E-08 70.4 12.2 101 54-202 252-353 (558)
319 PRK13748 putative mercuric red 97.4 0.0012 2.7E-08 71.1 12.2 96 55-201 271-367 (561)
320 PTZ00188 adrenodoxin reductase 97.4 0.00023 5.1E-09 73.5 5.8 38 53-90 38-76 (506)
321 PRK12775 putative trifunctiona 97.4 0.00019 4.1E-09 81.9 5.5 37 53-89 429-465 (1006)
322 TIGR01316 gltA glutamate synth 97.4 0.0023 5E-08 66.9 13.2 96 55-198 273-386 (449)
323 PRK12778 putative bifunctional 97.4 0.00023 5E-09 79.3 5.9 37 52-88 429-465 (752)
324 KOG4254 Phytoene desaturase [C 97.4 0.00068 1.5E-08 67.8 8.3 62 139-205 265-327 (561)
325 PRK12770 putative glutamate sy 97.3 0.0022 4.7E-08 64.9 11.6 96 55-199 173-286 (352)
326 KOG4716 Thioredoxin reductase 97.3 0.0028 6.1E-08 61.2 11.4 141 52-200 17-174 (503)
327 PRK05675 sdhA succinate dehydr 97.3 0.0029 6.2E-08 68.2 12.8 63 138-201 126-191 (570)
328 PRK12831 putative oxidoreducta 97.2 0.0033 7.2E-08 66.0 12.6 98 54-199 281-396 (464)
329 PTZ00318 NADH dehydrogenase-li 97.2 0.0023 5.1E-08 66.4 11.3 91 56-199 175-280 (424)
330 PRK12814 putative NADPH-depend 97.2 0.0004 8.7E-09 75.9 5.7 36 53-88 192-227 (652)
331 TIGR01318 gltD_gamma_fam gluta 97.2 0.00047 1E-08 72.4 5.9 36 53-88 140-175 (467)
332 TIGR03377 glycerol3P_GlpA glyc 97.1 0.002 4.4E-08 68.6 10.0 73 134-207 124-199 (516)
333 PRK12809 putative oxidoreducta 97.1 0.00062 1.3E-08 74.4 5.8 36 53-88 309-344 (639)
334 PLN03000 amine oxidase 97.1 0.00061 1.3E-08 75.1 5.7 41 53-93 183-223 (881)
335 COG0493 GltD NADPH-dependent g 97.1 0.00045 9.8E-09 71.5 4.2 39 55-93 124-162 (457)
336 PTZ00153 lipoamide dehydrogena 97.1 0.0052 1.1E-07 66.9 12.4 103 55-201 313-429 (659)
337 COG2303 BetA Choline dehydroge 97.1 0.00063 1.4E-08 72.6 5.1 58 143-200 207-267 (542)
338 COG4529 Uncharacterized protei 97.0 0.0068 1.5E-07 61.8 11.4 35 55-89 2-39 (474)
339 TIGR03143 AhpF_homolog putativ 97.0 0.0077 1.7E-07 64.7 12.7 98 54-201 143-248 (555)
340 TIGR01317 GOGAT_sm_gam glutama 97.0 0.00095 2.1E-08 70.4 5.3 36 53-88 142-177 (485)
341 PLN02976 amine oxidase 97.0 0.001 2.3E-08 76.1 5.7 40 52-91 691-730 (1713)
342 COG1252 Ndh NADH dehydrogenase 96.9 0.0032 6.9E-08 63.8 8.5 99 54-204 155-268 (405)
343 KOG1276 Protoporphyrinogen oxi 96.9 0.0012 2.5E-08 65.9 4.8 39 52-90 9-49 (491)
344 TIGR01372 soxA sarcosine oxida 96.9 0.011 2.4E-07 67.9 13.3 95 54-201 317-413 (985)
345 KOG0399 Glutamate synthase [Am 96.8 0.0072 1.6E-07 66.7 10.5 38 53-90 1784-1821(2142)
346 PRK12778 putative bifunctional 96.8 0.014 3.1E-07 65.1 13.1 98 54-199 570-686 (752)
347 PRK13984 putative oxidoreducta 96.8 0.0018 3.9E-08 70.5 5.8 37 52-88 281-317 (604)
348 KOG1238 Glucose dehydrogenase/ 96.8 0.011 2.4E-07 62.4 11.2 39 51-89 54-93 (623)
349 PF06100 Strep_67kDa_ant: Stre 96.7 0.023 5E-07 58.5 12.9 35 55-89 3-41 (500)
350 KOG0405 Pyridine nucleotide-di 96.7 0.01 2.2E-07 57.7 9.6 36 52-87 18-53 (478)
351 KOG1336 Monodehydroascorbate/f 96.7 0.017 3.6E-07 58.8 11.1 101 54-201 213-315 (478)
352 TIGR01816 sdhA_forward succina 96.6 0.021 4.7E-07 61.4 12.1 62 139-201 120-183 (565)
353 COG3486 IucD Lysine/ornithine 96.5 0.024 5.2E-07 56.5 10.9 147 52-202 3-160 (436)
354 PRK12769 putative oxidoreducta 96.5 0.027 5.8E-07 61.9 12.6 97 54-198 468-583 (654)
355 PF13434 K_oxygenase: L-lysine 96.4 0.0041 8.8E-08 62.4 5.1 141 52-197 188-339 (341)
356 TIGR03169 Nterm_to_SelD pyridi 96.4 0.026 5.6E-07 57.3 11.0 91 55-199 146-243 (364)
357 PRK12779 putative bifunctional 96.3 0.047 1E-06 62.1 13.5 99 54-200 447-563 (944)
358 TIGR01318 gltD_gamma_fam gluta 96.3 0.046 9.9E-07 57.5 12.4 98 54-199 282-398 (467)
359 COG0492 TrxB Thioredoxin reduc 96.2 0.066 1.4E-06 52.7 12.2 92 55-197 144-236 (305)
360 KOG1800 Ferredoxin/adrenodoxin 96.2 0.0066 1.4E-07 59.7 4.7 38 53-90 19-58 (468)
361 PRK12814 putative NADPH-depend 96.1 0.06 1.3E-06 59.1 12.7 34 54-87 323-357 (652)
362 COG3634 AhpF Alkyl hydroperoxi 96.0 0.041 9E-07 53.6 9.2 82 54-184 354-437 (520)
363 PLN02852 ferredoxin-NADP+ redu 95.8 0.14 3E-06 53.9 12.9 140 54-199 166-354 (491)
364 KOG3851 Sulfide:quinone oxidor 95.8 0.028 6E-07 54.2 6.8 35 52-86 37-73 (446)
365 PRK13984 putative oxidoreducta 95.7 0.094 2E-06 57.1 12.0 31 54-84 418-454 (604)
366 KOG2495 NADH-dehydrogenase (ub 95.7 0.033 7.2E-07 55.8 7.5 93 54-199 218-329 (491)
367 KOG1336 Monodehydroascorbate/f 95.7 0.044 9.5E-07 55.8 8.4 102 54-197 74-179 (478)
368 COG1251 NirB NAD(P)H-nitrite r 95.6 0.03 6.6E-07 59.8 7.3 97 56-200 147-244 (793)
369 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.015 3.3E-07 51.4 4.1 32 56-87 1-32 (157)
370 PRK12775 putative trifunctiona 95.5 0.14 3.1E-06 58.8 12.8 99 54-200 571-687 (1006)
371 TIGR03315 Se_ygfK putative sel 95.3 0.24 5.1E-06 56.4 13.4 34 54-87 666-701 (1012)
372 PF00996 GDI: GDP dissociation 95.2 0.042 9.2E-07 56.6 6.6 39 52-90 2-40 (438)
373 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.026 5.7E-07 51.1 4.5 33 56-88 1-33 (180)
374 PRK12809 putative oxidoreducta 95.1 0.23 5E-06 54.4 12.4 97 54-198 451-566 (639)
375 PRK02705 murD UDP-N-acetylmura 94.9 0.029 6.2E-07 58.9 4.6 34 56-89 2-35 (459)
376 COG0569 TrkA K+ transport syst 94.9 0.032 6.9E-07 52.5 4.2 33 56-88 2-34 (225)
377 PRK09853 putative selenate red 94.7 0.4 8.7E-06 54.5 13.1 34 54-87 668-703 (1019)
378 PRK01438 murD UDP-N-acetylmura 94.7 0.042 9.2E-07 58.0 5.2 33 55-87 17-49 (480)
379 PRK06249 2-dehydropantoate 2-r 94.6 0.053 1.1E-06 53.8 5.4 35 53-87 4-38 (313)
380 PF02558 ApbA: Ketopantoate re 94.6 0.053 1.1E-06 47.4 4.8 31 57-87 1-31 (151)
381 PF03721 UDPG_MGDP_dh_N: UDP-g 94.6 0.034 7.4E-07 50.5 3.7 32 56-87 2-33 (185)
382 TIGR03862 flavo_PP4765 unchara 94.2 0.73 1.6E-05 46.8 12.5 55 138-199 86-141 (376)
383 PRK06129 3-hydroxyacyl-CoA deh 94.1 0.055 1.2E-06 53.5 4.2 33 56-88 4-36 (308)
384 PRK07819 3-hydroxybutyryl-CoA 94.1 0.071 1.5E-06 52.1 4.9 34 55-88 6-39 (286)
385 KOG2495 NADH-dehydrogenase (ub 94.0 1.2 2.6E-05 45.0 13.1 117 52-201 53-172 (491)
386 PRK14106 murD UDP-N-acetylmura 93.9 0.085 1.8E-06 55.2 5.4 34 54-87 5-38 (450)
387 TIGR01317 GOGAT_sm_gam glutama 93.7 1.1 2.4E-05 47.3 13.4 35 54-88 283-318 (485)
388 TIGR02354 thiF_fam2 thiamine b 93.6 0.11 2.3E-06 48.0 4.9 35 53-87 20-55 (200)
389 PRK08293 3-hydroxybutyryl-CoA 93.6 0.085 1.8E-06 51.6 4.4 34 55-88 4-37 (287)
390 COG5044 MRS6 RAB proteins gera 93.6 0.27 5.8E-06 48.6 7.6 38 53-90 5-42 (434)
391 PF01593 Amino_oxidase: Flavin 93.5 0.073 1.6E-06 54.7 4.1 55 141-201 212-267 (450)
392 PF13241 NAD_binding_7: Putati 93.3 0.094 2E-06 42.6 3.6 35 53-87 6-40 (103)
393 PRK15116 sulfur acceptor prote 93.2 0.14 3E-06 49.2 5.1 36 53-88 29-65 (268)
394 PRK09260 3-hydroxybutyryl-CoA 93.2 0.099 2.1E-06 51.2 4.2 33 56-88 3-35 (288)
395 PRK05708 2-dehydropantoate 2-r 93.1 0.13 2.7E-06 50.9 4.9 33 55-87 3-35 (305)
396 TIGR01470 cysG_Nterm siroheme 93.1 0.16 3.5E-06 47.0 5.2 33 54-86 9-41 (205)
397 PF01262 AlaDh_PNT_C: Alanine 93.1 0.14 3.1E-06 45.6 4.8 35 53-87 19-53 (168)
398 PRK06719 precorrin-2 dehydroge 93.1 0.15 3.4E-06 44.9 4.9 33 53-85 12-44 (157)
399 KOG4716 Thioredoxin reductase 93.0 0.21 4.5E-06 48.7 5.9 105 54-203 198-304 (503)
400 PF02254 TrkA_N: TrkA-N domain 93.0 0.14 3E-06 42.4 4.3 31 57-87 1-31 (116)
401 PF00899 ThiF: ThiF family; I 92.9 0.14 3.1E-06 43.8 4.4 35 54-88 2-37 (135)
402 PF13478 XdhC_C: XdhC Rossmann 92.9 0.11 2.4E-06 44.6 3.6 32 57-88 1-32 (136)
403 PRK07066 3-hydroxybutyryl-CoA 92.9 0.12 2.7E-06 51.1 4.4 34 55-88 8-41 (321)
404 TIGR00562 proto_IX_ox protopor 92.9 10 0.00022 39.6 19.2 31 316-352 428-458 (462)
405 PRK06035 3-hydroxyacyl-CoA deh 92.8 0.12 2.6E-06 50.7 4.3 32 56-87 5-36 (291)
406 PRK06522 2-dehydropantoate 2-r 92.8 0.13 2.7E-06 50.7 4.3 32 56-87 2-33 (304)
407 TIGR02731 phytoene_desat phyto 92.7 2.6 5.6E-05 44.1 14.4 66 138-205 213-281 (453)
408 TIGR03467 HpnE squalene-associ 92.7 3.7 8E-05 42.1 15.4 53 141-198 200-253 (419)
409 PF01488 Shikimate_DH: Shikima 92.7 0.21 4.6E-06 42.8 5.0 35 53-87 11-46 (135)
410 PRK12921 2-dehydropantoate 2-r 92.6 0.14 3E-06 50.5 4.4 30 56-85 2-31 (305)
411 PF13738 Pyr_redox_3: Pyridine 92.6 0.18 3.8E-06 46.2 4.9 35 53-87 166-200 (203)
412 PRK07530 3-hydroxybutyryl-CoA 92.5 0.18 4E-06 49.4 5.1 34 55-88 5-38 (292)
413 PRK06718 precorrin-2 dehydroge 92.4 0.21 4.5E-06 46.1 5.0 34 53-86 9-42 (202)
414 PRK12475 thiamine/molybdopteri 92.4 0.19 4E-06 50.4 4.9 36 53-88 23-59 (338)
415 KOG0404 Thioredoxin reductase 92.4 1.6 3.5E-05 40.3 10.3 102 54-205 157-260 (322)
416 PRK05808 3-hydroxybutyryl-CoA 92.4 0.15 3.2E-06 49.8 4.1 33 56-88 5-37 (282)
417 PRK12416 protoporphyrinogen ox 92.4 9.1 0.0002 40.1 18.0 31 316-352 429-459 (463)
418 TIGR00518 alaDH alanine dehydr 92.3 0.19 4.2E-06 51.0 5.0 35 53-87 166-200 (370)
419 PRK04148 hypothetical protein; 92.2 0.15 3.3E-06 43.4 3.4 33 55-88 18-50 (134)
420 COG1004 Ugd Predicted UDP-gluc 92.1 0.17 3.7E-06 50.6 4.2 33 56-88 2-34 (414)
421 cd00401 AdoHcyase S-adenosyl-L 92.0 0.2 4.2E-06 51.4 4.6 35 54-88 202-236 (413)
422 PRK07688 thiamine/molybdopteri 91.9 0.24 5.2E-06 49.6 5.1 35 53-87 23-58 (339)
423 TIGR02355 moeB molybdopterin s 91.9 0.25 5.4E-06 46.9 5.0 36 53-88 23-59 (240)
424 PRK09424 pntA NAD(P) transhydr 91.9 0.2 4.4E-06 52.7 4.7 35 53-87 164-198 (509)
425 TIGR02356 adenyl_thiF thiazole 91.7 0.28 6E-06 45.3 5.0 37 52-88 19-56 (202)
426 cd01080 NAD_bind_m-THF_DH_Cycl 91.7 0.3 6.5E-06 43.6 5.0 36 52-87 42-78 (168)
427 cd05292 LDH_2 A subgroup of L- 91.7 0.24 5.3E-06 48.9 4.8 33 56-88 2-36 (308)
428 PRK11064 wecC UDP-N-acetyl-D-m 91.7 0.22 4.7E-06 51.5 4.6 34 55-88 4-37 (415)
429 PRK08644 thiamine biosynthesis 91.6 0.3 6.5E-06 45.4 5.0 35 53-87 27-62 (212)
430 PRK08229 2-dehydropantoate 2-r 91.3 0.28 6E-06 49.3 4.8 31 56-86 4-34 (341)
431 PRK08328 hypothetical protein; 91.2 0.32 7E-06 45.9 4.9 36 53-88 26-62 (231)
432 cd01487 E1_ThiF_like E1_ThiF_l 91.2 0.32 7E-06 43.7 4.7 32 56-87 1-33 (174)
433 PRK05690 molybdopterin biosynt 91.1 0.32 7E-06 46.3 4.9 35 53-87 31-66 (245)
434 PF01593 Amino_oxidase: Flavin 91.1 2.8 6E-05 42.8 12.2 29 64-92 1-29 (450)
435 PRK14620 NAD(P)H-dependent gly 90.9 0.3 6.5E-06 48.7 4.6 32 56-87 2-33 (326)
436 TIGR01763 MalateDH_bact malate 90.8 0.37 8E-06 47.6 5.1 31 56-86 3-34 (305)
437 PRK00066 ldh L-lactate dehydro 90.8 0.45 9.8E-06 47.2 5.7 37 52-88 4-42 (315)
438 TIGR02964 xanthine_xdhC xanthi 90.8 0.4 8.7E-06 45.7 5.1 36 53-88 99-134 (246)
439 PRK10669 putative cation:proto 90.7 0.29 6.4E-06 52.7 4.6 35 54-88 417-451 (558)
440 cd00757 ThiF_MoeB_HesA_family 90.6 0.39 8.5E-06 45.2 4.9 35 53-87 20-55 (228)
441 PRK06130 3-hydroxybutyryl-CoA 90.6 0.34 7.4E-06 48.0 4.7 33 55-87 5-37 (311)
442 KOG1439 RAB proteins geranylge 90.6 0.4 8.7E-06 47.9 4.9 38 53-90 3-40 (440)
443 PF00056 Ldh_1_N: lactate/mala 90.5 0.46 9.9E-06 41.1 4.8 32 56-87 2-36 (141)
444 PRK14619 NAD(P)H-dependent gly 90.4 0.44 9.6E-06 47.1 5.3 34 55-88 5-38 (308)
445 PRK04308 murD UDP-N-acetylmura 90.3 0.47 1E-05 49.6 5.7 35 54-88 5-39 (445)
446 TIGR03026 NDP-sugDHase nucleot 90.3 0.29 6.2E-06 50.6 4.0 33 56-88 2-34 (411)
447 PRK02472 murD UDP-N-acetylmura 90.2 0.43 9.4E-06 49.8 5.3 34 55-88 6-39 (447)
448 PRK08223 hypothetical protein; 90.1 0.45 9.7E-06 46.1 4.8 37 52-88 25-62 (287)
449 cd01483 E1_enzyme_family Super 90.1 0.56 1.2E-05 40.5 5.1 33 56-88 1-34 (143)
450 PLN02545 3-hydroxybutyryl-CoA 90.0 0.36 7.8E-06 47.4 4.3 33 56-88 6-38 (295)
451 PRK12549 shikimate 5-dehydroge 90.0 0.45 9.8E-06 46.4 4.9 34 54-87 127-161 (284)
452 cd00755 YgdL_like Family of ac 90.0 0.49 1.1E-05 44.6 4.9 36 53-88 10-46 (231)
453 cd05311 NAD_bind_2_malic_enz N 89.9 0.46 1E-05 44.7 4.6 33 54-86 25-60 (226)
454 KOG1346 Programmed cell death 89.7 1.2 2.6E-05 44.7 7.4 99 53-200 346-450 (659)
455 PRK06567 putative bifunctional 89.7 0.86 1.9E-05 51.4 7.2 32 55-86 551-585 (1028)
456 TIGR00936 ahcY adenosylhomocys 89.6 0.45 9.8E-06 48.6 4.6 36 53-88 194-229 (406)
457 TIGR03736 PRTRC_ThiF PRTRC sys 89.6 0.51 1.1E-05 44.8 4.7 36 52-87 9-55 (244)
458 PRK00094 gpsA NAD(P)H-dependen 89.4 0.49 1.1E-05 47.0 4.7 32 56-87 3-34 (325)
459 PRK14618 NAD(P)H-dependent gly 89.4 0.55 1.2E-05 46.9 5.1 32 56-87 6-37 (328)
460 cd01485 E1-1_like Ubiquitin ac 89.3 0.58 1.3E-05 43.0 4.8 36 53-88 18-54 (198)
461 cd05291 HicDH_like L-2-hydroxy 89.3 0.52 1.1E-05 46.6 4.8 33 56-88 2-36 (306)
462 PRK06223 malate dehydrogenase; 89.3 0.54 1.2E-05 46.4 4.9 33 55-87 3-36 (307)
463 PRK08306 dipicolinate synthase 89.2 0.6 1.3E-05 45.9 5.1 35 53-87 151-185 (296)
464 PRK11749 dihydropyrimidine deh 89.2 0.49 1.1E-05 49.7 4.7 34 54-87 273-307 (457)
465 COG1063 Tdh Threonine dehydrog 89.2 0.46 9.9E-06 47.9 4.3 32 56-87 171-203 (350)
466 COG0446 HcaD Uncharacterized N 89.1 1.8 3.8E-05 44.3 8.8 32 57-88 1-34 (415)
467 PRK07417 arogenate dehydrogena 89.1 0.48 1E-05 46.1 4.3 32 56-87 2-33 (279)
468 PF00670 AdoHcyase_NAD: S-aden 89.1 0.52 1.1E-05 41.5 4.0 34 54-87 23-56 (162)
469 cd01492 Aos1_SUMO Ubiquitin ac 89.0 0.62 1.3E-05 42.8 4.7 35 53-87 20-55 (197)
470 TIGR00561 pntA NAD(P) transhyd 88.9 0.6 1.3E-05 49.1 5.1 35 54-88 164-198 (511)
471 PTZ00082 L-lactate dehydrogena 88.9 0.68 1.5E-05 46.0 5.2 34 55-88 7-41 (321)
472 KOG1346 Programmed cell death 88.8 3 6.5E-05 42.1 9.4 137 44-200 168-312 (659)
473 PLN02353 probable UDP-glucose 88.8 0.53 1.2E-05 49.3 4.6 32 56-87 3-36 (473)
474 cd01339 LDH-like_MDH L-lactate 88.7 0.54 1.2E-05 46.3 4.4 31 57-87 1-32 (300)
475 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.7 0.48 1E-05 50.1 4.3 35 55-89 6-40 (503)
476 PRK15057 UDP-glucose 6-dehydro 88.6 0.53 1.1E-05 48.1 4.4 32 56-88 2-33 (388)
477 PRK05600 thiamine biosynthesis 88.5 0.7 1.5E-05 46.9 5.1 36 52-87 39-75 (370)
478 cd01078 NAD_bind_H4MPT_DH NADP 88.4 0.77 1.7E-05 41.9 4.9 33 54-86 28-61 (194)
479 PRK03369 murD UDP-N-acetylmura 88.3 0.64 1.4E-05 49.2 4.9 33 55-87 13-45 (488)
480 COG1748 LYS9 Saccharopine dehy 88.3 0.63 1.4E-05 47.1 4.6 34 55-88 2-36 (389)
481 PRK05597 molybdopterin biosynt 88.2 0.69 1.5E-05 46.7 4.9 35 53-87 27-62 (355)
482 PRK05476 S-adenosyl-L-homocyst 88.1 0.66 1.4E-05 47.7 4.7 36 53-88 211-246 (425)
483 PRK01710 murD UDP-N-acetylmura 88.0 0.62 1.3E-05 48.9 4.5 34 55-88 15-48 (458)
484 cd01484 E1-2_like Ubiquitin ac 87.9 0.79 1.7E-05 43.3 4.8 32 56-87 1-33 (234)
485 cd05293 LDH_1 A subgroup of L- 87.9 0.89 1.9E-05 45.0 5.3 34 54-87 3-38 (312)
486 PF10727 Rossmann-like: Rossma 87.8 0.35 7.6E-06 40.9 2.1 35 52-86 8-42 (127)
487 PRK07531 bifunctional 3-hydrox 87.8 0.61 1.3E-05 49.4 4.3 33 56-88 6-38 (495)
488 PRK11730 fadB multifunctional 87.7 0.62 1.3E-05 51.7 4.5 34 55-88 314-347 (715)
489 PRK06153 hypothetical protein; 87.4 0.64 1.4E-05 46.8 4.0 36 53-88 175-211 (393)
490 PRK12548 shikimate 5-dehydroge 87.3 0.89 1.9E-05 44.5 4.9 34 54-87 126-160 (289)
491 TIGR02437 FadB fatty oxidation 87.3 0.68 1.5E-05 51.3 4.5 34 55-88 314-347 (714)
492 COG0771 MurD UDP-N-acetylmuram 87.3 0.69 1.5E-05 47.8 4.2 36 54-89 7-42 (448)
493 PRK08268 3-hydroxy-acyl-CoA de 87.1 0.87 1.9E-05 48.3 5.0 35 55-89 8-42 (507)
494 PRK09496 trkA potassium transp 87.1 0.68 1.5E-05 48.4 4.2 33 56-88 2-34 (453)
495 PRK08762 molybdopterin biosynt 87.1 0.85 1.8E-05 46.5 4.8 36 52-87 133-169 (376)
496 COG1179 Dinucleotide-utilizing 87.0 0.77 1.7E-05 42.8 4.0 35 54-88 30-65 (263)
497 cd01075 NAD_bind_Leu_Phe_Val_D 87.0 1.1 2.5E-05 41.1 5.2 34 54-87 28-61 (200)
498 TIGR02853 spore_dpaA dipicolin 87.0 0.96 2.1E-05 44.2 4.9 35 53-87 150-184 (287)
499 TIGR01915 npdG NADPH-dependent 86.9 0.9 1.9E-05 42.4 4.5 32 56-87 2-34 (219)
500 KOG2304 3-hydroxyacyl-CoA dehy 86.9 0.6 1.3E-05 43.0 3.1 36 54-89 11-46 (298)
No 1
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-89 Score=645.72 Aligned_cols=489 Identities=66% Similarity=1.083 Sum_probs=452.2
Q ss_pred hHHHHHHHHHHHHheEEEeccCCCCCcccccccccccccccccCCCCCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEE
Q 010765 4 YIAGTLIAAVFLLLFVVRRNDSKKPRKVSTTYKTQNDVFRSSVNAGKNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVI 83 (502)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lv 83 (502)
.++..++.+++++.+.|......+.+++.....+.. -+.+.+..+||||||||++|.++|+.|+|.|.+|+|+
T Consensus 2 ~~~~~~l~~l~af~l~~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVI 74 (509)
T KOG1298|consen 2 ALTSVCLWTLLAFVLTWTVFYLTKRKKKATNVAETS-------VEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVI 74 (509)
T ss_pred chHHHHHHHHHHHHhhheeeecccccccccccchhh-------hhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEE
Confidence 345566667777666664433333222332222211 1124466789999999999999999999999999999
Q ss_pred ecCCCCCCccc------------------chhhhccccccceEEEEECCceeeeeccCcCCCCCCcceeecchHHHHHHH
Q 010765 84 ERDVTEPDRIV------------------DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMR 145 (502)
Q Consensus 84 Er~~~~~~r~~------------------~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~ 145 (502)
||+...++|++ +|++.|+++.+.|+.++.+|+...+.||...+...+.|+.+|+++|.+.|+
T Consensus 75 ERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR 154 (509)
T KOG1298|consen 75 ERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLR 154 (509)
T ss_pred ecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHH
Confidence 99999999886 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhhcCCC-CCCccceeEEEEeec
Q 010765 146 EKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPK-VDVPSCFVGLVLENC 224 (502)
Q Consensus 146 ~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~ 224 (502)
+.+...|||++.+|+|.++.++++.|.||++++++|++.+..|.+.|.|||++|++|+.+-.+. ....++++|++..++
T Consensus 155 ~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~ 234 (509)
T KOG1298|consen 155 KKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNC 234 (509)
T ss_pred HHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccccchheeeeeecCC
Confidence 9999999999999999999999999999999999999999999999999999999999998755 448899999999999
Q ss_pred CCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeecc
Q 010765 225 QLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMP 304 (502)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 304 (502)
+++.+++++++++++.++.+||++..++|++++++++..|+..+.++..++.+.+.|++|+++++.|.++++++.++.+|
T Consensus 235 ~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmp 314 (509)
T KOG1298|consen 235 RLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMP 314 (509)
T ss_pred CCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHH
Q 010765 305 NRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLA 384 (502)
Q Consensus 305 ~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a 384 (502)
+...++....+.+++|+|||.++.||++|.||+.++.|+..|.++|..+.+..+.+.+.+++++|++.|+|+...+|.++
T Consensus 315 n~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa 394 (509)
T KOG1298|consen 315 NSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLA 394 (509)
T ss_pred cccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHhhhccCChhHHHHHHHHHhhhhhcCCCCchhHHHHhccCCCChHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Q 010765 385 GALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGAR 464 (502)
Q Consensus 385 ~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~~h~~~~~l~~~~~~~~~~~~~~~~~~~~~ 464 (502)
.++|++|.+++++...++|+.||+|+++|+.|.++|+.+|||++|+|.++..|||+|++|++++.+.++|.|.++|.|++
T Consensus 395 ~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~Lv~HffAValy~i~~ll~p~PsP~riw~s~~ 474 (509)
T KOG1298|consen 395 NALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLSLVLHFFAVALYGIYRLLSPFPSPRRIWESLR 474 (509)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhchhhHhhhhhhhhccccCcccccccCCC
Q 010765 465 LISGASGIIFPIIKAEGVRQMFFPATIPAVYRAPP 499 (502)
Q Consensus 465 ~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 499 (502)
++.+||.||+|+|++||+.||+||.|+++|||+||
T Consensus 475 i~~~A~~vi~P~i~aEgv~qm~fp~~~~a~~~~~~ 509 (509)
T KOG1298|consen 475 ILSLASSVIFPIIKAEGVSQMLFPANAAAYYRSYP 509 (509)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccchHhhhcCCC
Confidence 99999999999999999999999999999999997
No 2
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=2.2e-74 Score=603.50 Aligned_cols=453 Identities=50% Similarity=0.877 Sum_probs=382.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc---------chhhh---------ccccccceEEEE
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV---------DCVEE---------IDAQQVLGYALF 111 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~---------~~l~~---------l~~~~~~g~~~~ 111 (502)
+.+..+||+|||||++|+++|+.|+++|++|+|+||++..+++.. +.+++ +......++.++
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 346678999999999999999999999999999999865444322 22222 222345566676
Q ss_pred ECCceeeeeccCcC--CCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 010765 112 KDGKSTRLSYPLEK--FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAP 189 (502)
Q Consensus 112 ~~g~~~~~~~~~~~--~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad 189 (502)
.+|+.....++... ......++.++|.+|.+.|++++.+.+++++.+++++++.++++.+.+|++.+++|++.+++||
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~Ad 198 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAP 198 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECC
Confidence 66665455555322 2223456899999999999999999889999999988888777777788887778887778899
Q ss_pred EEEEecCCCchhhhhhcCCCCCCccceeEEEEeecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCCCCCch
Q 010765 190 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNG 269 (502)
Q Consensus 190 ~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 269 (502)
+||+|||++|.+|+.++.......+++.++...+...+.++.+++++++++++++||++++++++++.++.+..++....
T Consensus 199 LVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~~~~~ 278 (514)
T PLN02985 199 LTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPSIANG 278 (514)
T ss_pred EEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCCcChh
Confidence 99999999999999998765444455666665555566677778888988999999999999888888876666666667
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhcC-CeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHH
Q 010765 270 EMANYLKAMVAPQVPPELHEAFVSAVERG-NIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRN 348 (502)
Q Consensus 270 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~ 348 (502)
+..+++++...|.+++.+.+.+...++.. .++.+++...+...+..+|++|+|||||+++|++|||||+|++||..|++
T Consensus 279 ~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~ 358 (514)
T PLN02985 279 EMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRR 358 (514)
T ss_pred hHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHH
Confidence 88888887677888888888876655543 57788888777777888999999999999999999999999999999999
Q ss_pred hcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCCCCchhHHHHhccCC
Q 010765 349 LLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGLN 428 (502)
Q Consensus 349 ~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (502)
+|....+..+..+..++++.|+++|+++++.++.+|+.+|++|...+++..+.+|+.||+|+.+|+.|.++|+++|||+.
T Consensus 359 lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~ 438 (514)
T PLN02985 359 LLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMN 438 (514)
T ss_pred HhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCC
Confidence 99876544566678899999999999999999999999999997656777899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHhhhhchhhHhhhhhhhhccccCcccccccCCCCCC
Q 010765 429 PRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATIPAVYRAPPVED 502 (502)
Q Consensus 429 ~~P~~~~~h~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (502)
|+|.+++.|||.|++|+++.++...+.|.++|.+++++++||.||+|+||+|++.+|+||.+.++|||++|+++
T Consensus 439 ~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~~ 512 (514)
T PLN02985 439 PRPLSLIYHLCAITLSSIGHLLSPFPSPLRIWHSLRLFGLALKMLVPHLKAEGVSQMLFPANAAAYRKSYMAAT 512 (514)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhHHHhhhhccccccccccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=1.1e-62 Score=517.35 Aligned_cols=424 Identities=42% Similarity=0.692 Sum_probs=340.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC-CCCCccc---------chhhhcccc--------ccceEEEEEC-
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV-TEPDRIV---------DCVEEIDAQ--------QVLGYALFKD- 113 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~-~~~~r~~---------~~l~~l~~~--------~~~g~~~~~~- 113 (502)
.++||+||||||+|+++|+.|+++|++|+|+||++ ..+++.. +++++++.. .+.++.++..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~ 111 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK 111 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence 46899999999999999999999999999999986 2333321 333333221 3445555553
Q ss_pred CceeeeeccCcCCCCCCcceeecchHHHHHHHHHH--HcCCCeEEEeceEEEEEeeCC----eEEEEEEEeCCC------
Q 010765 114 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKA--ASLPNVRLEQGTVTSLLEENG----TIKGVQYKTKDG------ 181 (502)
Q Consensus 114 g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a--~~~~~v~i~~~~v~~~~~~~~----~v~~v~~~~~~G------ 181 (502)
|+...+.++ ....++.+++++|.+.|++.+ +..+++++++++++++.++++ ++.+|++...++
T Consensus 112 G~~~~i~~~-----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~ 186 (567)
T PTZ00367 112 GKQVKLPYG-----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPEN 186 (567)
T ss_pred CCEEEecCC-----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCccccccc
Confidence 433333332 223467889999999999988 455789998888888876554 367788766542
Q ss_pred ---------------cEEEEecCEEEEecCCCchhhhhhcCCC--CCCccceeEEEEeecCCCCCCceEEEEcCCCcEEE
Q 010765 182 ---------------QELRAYAPLTIVCDGCFSNLRRSLCKPK--VDVPSCFVGLVLENCQLPFANHGHVILADPSPILF 244 (502)
Q Consensus 182 ---------------~~~~v~ad~vI~ADG~~S~vR~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (502)
+..+++||+||+|||++|.+|+.++... ....+.+.+....+..+|.++.+++++++++++++
T Consensus 187 ~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~ 266 (567)
T PTZ00367 187 PFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILS 266 (567)
T ss_pred ccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEE
Confidence 1235679999999999999999997643 23445667777666777887888889999999999
Q ss_pred EecCCCeEEEEEEeCCCCCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHh-cCCeeeccCCCCCCCCCCCCCEEEEeC
Q 010765 245 YPISSTEVRCLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVE-RGNIRTMPNRSMPADPQPTPGALLMGD 323 (502)
Q Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGD 323 (502)
||+++++.++++.++....++ .++..+++.+...|.+++++.+.+...+. .+.+..++....++.++..+|++|+||
T Consensus 267 yPl~~~~~r~lv~~~~~~~p~--~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGD 344 (567)
T PTZ00367 267 YRLDDNELRVLVDYNKPTLPS--LEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGD 344 (567)
T ss_pred EEcCCCeEEEEEEecCCcCCC--hHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEc
Confidence 999999988888876443322 23456777776777888888888766654 346788888888888888899999999
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhcCccC-----CCCChHHHHHHHH----HHHHHcccchhHHHHHHHHHHhhhccC
Q 010765 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLH-----DFNDAASLGRYLE----SFYTLRKPVASTINTLAGALYKVFSSS 394 (502)
Q Consensus 324 AAh~~~P~~G~G~n~al~Da~~La~~L~~~~-----~~~~~~~~~~~l~----~Y~~~R~p~~~~~~~~a~~~~~~~~~~ 394 (502)
|||++||++|||||+||+||..|+++|.... +..+..+++++|+ .|+++|++++..++.+++.++++|..
T Consensus 345 AAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~- 423 (567)
T PTZ00367 345 HANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS- 423 (567)
T ss_pred ccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-
Confidence 9999999999999999999999999997542 2223345677777 99999999999999999999999975
Q ss_pred ChhHHHHHHHHHhhhhhcCCCCchhHHHHhccCCCChHHHHHHHHHHHHHHHhhhccC----------------------
Q 010765 395 PDQARKEMRQACFDYLSLGGVFSTGPVALLSGLNPRPLSLVLHFFAVAIYGVGRLLLP---------------------- 452 (502)
Q Consensus 395 ~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~~h~~~~~l~~~~~~~~~---------------------- 452 (502)
..+|+.||+|+++|+.|.++|+++|||+.|+|..++.|||.|++|+++.++..
T Consensus 424 -----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~~l~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (567)
T PTZ00367 424 -----PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGLLFHYFSVALYGVLNLIMETGAYSIFGKQLSSFEKLTNVAS 498 (567)
T ss_pred -----HHHHHHHHHHHhcCCccccccHHHHcCCCCCcHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999999999999998876
Q ss_pred -CCChHHHHHHHHHHHhhhhchhhHhhhh--hhhhccccC
Q 010765 453 -FPSPKRMWIGARLISGASGIIFPIIKAE--GVRQMFFPA 489 (502)
Q Consensus 453 -~~~~~~~~~~~~~~~~a~~~~~p~~~~~--~~~~~~~~~ 489 (502)
++.|.++|.++.++++||.||+|++|+| ++.++++|.
T Consensus 499 ~~~~~~~~~~~~~~~~~a~~~~~p~~~~e~~~~~~~~~~~ 538 (567)
T PTZ00367 499 FFVDPERIKHALYLLGAATTIAAPLAKSEFVSLWRFIDPT 538 (567)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4679999999999999999999999999 889999994
No 4
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=100.00 E-value=2.9e-49 Score=369.58 Aligned_cols=272 Identities=57% Similarity=0.968 Sum_probs=258.2
Q ss_pred cCEEEEecCCCchhhhhhcCCCCCCccceeEEEEeecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCCCCC
Q 010765 188 APLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSIS 267 (502)
Q Consensus 188 ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 267 (502)
|+++|.|||..|++|+.+....+...++++|+...++++|.++++++++++++++++|+++.+++|++++++.++.|+.+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~~~ 81 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPSVS 81 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCCcc
Confidence 88999999999999999997778888999999999999999999999999999999999999999999999988888888
Q ss_pred chHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHH
Q 010765 268 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 347 (502)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La 347 (502)
.+++++++++.+.|.+|+++++.|.+++++++++.+|+...++......+++++|||+|+.||++|+||++|+.|+..|+
T Consensus 82 ~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~ 161 (276)
T PF08491_consen 82 NGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLR 161 (276)
T ss_pred chHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCCCCchhHHHHhccC
Q 010765 348 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSGL 427 (502)
Q Consensus 348 ~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~~~ 427 (502)
+.|....+..+..++.+++++|+++|++....+|.+++++|.+|.++++ ....+|++||+|+++|+.+.++|++++||+
T Consensus 162 ~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~-~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl 240 (276)
T PF08491_consen 162 DLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDD-YLKALRQGCFKYFQLGGECVSGPVALLSGL 240 (276)
T ss_pred HHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCCCCCcchHHHhccC
Confidence 9999887788889999999999999999999999999999999998754 567999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCCC---ChHHHH
Q 010765 428 NPRPLSLVLHFFAVAIYGVGRLLLPFP---SPKRMW 460 (502)
Q Consensus 428 ~~~P~~~~~h~~~~~l~~~~~~~~~~~---~~~~~~ 460 (502)
.++|..++.|||.|++|+++.++.+.| .|.++|
T Consensus 241 ~p~P~~L~~Hff~Va~~~i~~~~~~~p~~~~P~~~~ 276 (276)
T PF08491_consen 241 NPRPLVLFYHFFAVAFYAIYLNLKPRPWYGFPLALW 276 (276)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcccCCcccCChhhC
Confidence 999999999999999999999998877 666554
No 5
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=6e-46 Score=396.19 Aligned_cols=391 Identities=21% Similarity=0.278 Sum_probs=265.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC---------cccchhhhcccc------ccc-----eEE
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD---------RIVDCVEEIDAQ------QVL-----GYA 109 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~---------r~~~~l~~l~~~------~~~-----g~~ 109 (502)
|.+.++||+||||||+||++|+.|+++|++|+|+||++.... +++++++.++.. ... ...
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~ 82 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA 82 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence 446679999999999999999999999999999999865321 222444444321 110 111
Q ss_pred EE--ECCce-eeeeccCcC------------CCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEE
Q 010765 110 LF--KDGKS-TRLSYPLEK------------FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKG 173 (502)
Q Consensus 110 ~~--~~g~~-~~~~~~~~~------------~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~ 173 (502)
.. ..|+. ..+.++... ...+..+..++|..|++.|.+.+.+.+++++++++ ++++.++++++.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~- 161 (545)
T PRK06126 83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT- 161 (545)
T ss_pred EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-
Confidence 11 12221 112221100 01122346789999999999999888889999998 999998877665
Q ss_pred EEEEe-CCCcEEEEecCEEEEecCCCchhhhhhcCCCCCCcc--ceeEEEEeecCC----CCCC-ceEEEEcCCCcEEEE
Q 010765 174 VQYKT-KDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPS--CFVGLVLENCQL----PFAN-HGHVILADPSPILFY 245 (502)
Q Consensus 174 v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~~~~~~--~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~ 245 (502)
+.+.+ .+|+..++++|+||+|||++|.||+.+++...+... ....+.+...++ +... ..++++.++....++
T Consensus 162 v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~ 241 (545)
T PRK06126 162 ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLV 241 (545)
T ss_pred EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEE
Confidence 55544 567767788999999999999999999987654432 223333322122 1112 223344455566667
Q ss_pred ecCCCeEEEEEE-eCC-CCCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeC
Q 010765 246 PISSTEVRCLVD-VPG-QKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGD 323 (502)
Q Consensus 246 p~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGD 323 (502)
+..++. .|.+. ++. +.....+.+++.+.+++.+.+.++.++. ....|......+++|+.|||+|+||
T Consensus 242 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----------~~~~w~~~~~~a~~~~~gRv~L~GD 310 (545)
T PRK06126 242 AIDGRD-EWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEVL----------SVVPWTGRRLVADSYRRGRVFLAGD 310 (545)
T ss_pred EECCCC-eEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEEE----------eecccchhheehhhhccCCEEEech
Confidence 776543 45544 332 2223445667777777766533332221 2234556667888999999999999
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccC--------C
Q 010765 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS--------P 395 (502)
Q Consensus 324 AAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~--------~ 395 (502)
|||.++|++|||||+||+||.+|+|+|+.+. ++.+.+++|++|+++|+|++..++..+..+...+... +
T Consensus 311 AAH~~~P~~GqG~N~gieDa~~La~~La~~~---~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 387 (545)
T PRK06126 311 AAHLFTPTGGYGMNTGIGDAVNLAWKLAAVL---NGWAGPALLDSYEAERRPIAARNTDYARRNADALGSFPVPPEIEDD 387 (545)
T ss_pred hhccCCCCcCcccchhHHHHHHHHHHHHHHH---cCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhcccccchhhccC
Confidence 9999999999999999999999999998754 3344578999999999999999999988776655421 1
Q ss_pred hhHHHHHHHHHhhh-------------hhcCCCCchhHHHHhc------------cCCCChHHHHHHHHH------HHHH
Q 010765 396 DQARKEMRQACFDY-------------LSLGGVFSTGPVALLS------------GLNPRPLSLVLHFFA------VAIY 444 (502)
Q Consensus 396 ~~~~~~lr~~~~~~-------------~~~g~~~~~~~~~~~~------------~~~~~P~~~~~h~~~------~~l~ 444 (502)
++....+|+.+.++ +.+|++|.++++.... ..+++||.|+||.|+ +||+
T Consensus 388 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~pG~r~ph~~l~~~~s~~dl~ 467 (545)
T PRK06126 388 GPAGDAARRKVGDALSEHARQEFNSPGITLGYRYDGSPIIVPDGTPPPPDDPGVYVPSACPGGRAPHAWLSDGRSLYDLF 467 (545)
T ss_pred ChhHHHHHHHHHHHHhhccccccccceeeecceecCCceecCCCCCCCCCcccccccCCCCCcCCCCeeecCCcchHHhc
Confidence 12233445554332 3478999888765322 236799999999997 9999
Q ss_pred HHhhhccCCCC
Q 010765 445 GVGRLLLPFPS 455 (502)
Q Consensus 445 ~~~~~~~~~~~ 455 (502)
|.+|+|++++.
T Consensus 468 g~~f~Ll~~~~ 478 (545)
T PRK06126 468 GPGFTLLRFGD 478 (545)
T ss_pred CCceEEEecCC
Confidence 99999999764
No 6
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=4.7e-43 Score=358.14 Aligned_cols=347 Identities=24% Similarity=0.327 Sum_probs=255.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC---CCc-------ccchhhhccc-ccc-------ceEEEEECCc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE---PDR-------IVDCVEEIDA-QQV-------LGYALFKDGK 115 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~---~~r-------~~~~l~~l~~-~~~-------~g~~~~~~g~ 115 (502)
.+||+||||||+||++|+.|+++|++|+|+||.+.. ..| +.++++.++. ..+ .....+..+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999998321 112 2267777765 321 1122233332
Q ss_pred eeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEe
Q 010765 116 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 194 (502)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~A 194 (502)
...+.++.........++.++|..|.+.|.+++.+.+++++++++ |+.+.++++.+. +++.. +|+ +++||+||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~-dG~--~~~a~llVgA 157 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSF-DGE--TLDADLLVGA 157 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcC-CCc--EEecCEEEEC
Confidence 223444444444456688999999999999999999889999998 999999887665 55544 887 5669999999
Q ss_pred cCCCchhhhhhcCCC-CCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC---CCCCCch
Q 010765 195 DGCFSNLRRSLCKPK-VDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VPSISNG 269 (502)
Q Consensus 195 DG~~S~vR~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~~ 269 (502)
||.+|.||+++++.. ....+...++... ..+.++......++.+.+++.++|++++.....+..+... ......+
T Consensus 158 DG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (387)
T COG0654 158 DGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDE 237 (387)
T ss_pred CCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCHH
Confidence 999999999999433 3334445555443 2333666667778888899999999976667777665332 2233444
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHh
Q 010765 270 EMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNL 349 (502)
Q Consensus 270 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~ 349 (502)
...+.+.+.+....+ +...........+|+....+.+|..+||+|+|||||+++|++|||+|+||+||.+|+++
T Consensus 238 ~~~~~l~~~~~~~~~------~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~ 311 (387)
T COG0654 238 EFLRELQRRLGERDP------LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEA 311 (387)
T ss_pred HHHHHHHHhcCcccc------cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHH
Confidence 444444443322110 11122334566788888899999999999999999999999999999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCC
Q 010765 350 LKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 414 (502)
Q Consensus 350 L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 414 (502)
|.+.... +.+ ..+|+.|+++|++.+..++..++.+.+.|..+ .+....+|+..+.++....
T Consensus 312 L~~~~~~--~~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~~~~~ 372 (387)
T COG0654 312 LAAAPRP--GAD-AAALAAYEARRRPRAEAIQKLSRALGRLFSAD-GPFARFLRNLGLRLLDRLP 372 (387)
T ss_pred HHHHhhc--Ccc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC-CcHHHHHHHHHHHhhccCc
Confidence 9976421 111 78999999999999999999999999998876 5678889999888775544
No 7
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.8e-43 Score=375.96 Aligned_cols=387 Identities=23% Similarity=0.232 Sum_probs=260.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC--Cccc-------chhhhcccc--------ccceEEEEECC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP--DRIV-------DCVEEIDAQ--------QVLGYALFKDG 114 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~--~r~~-------~~l~~l~~~--------~~~g~~~~~~g 114 (502)
+.++||+||||||+||++|+.|+++|++|+|+||++... ++.. ++++.++.. ...++.++...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 456899999999999999999999999999999996543 2221 334433221 22334444322
Q ss_pred ceeeeeccCcCC--CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 115 KSTRLSYPLEKF--HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 115 ~~~~~~~~~~~~--~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
......++.... ...+....++|..+++.|++.+.+.+++++++++ +++++++++++. |++++.+|+..+++||+|
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYV 166 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEEE
Confidence 222222221110 0112235789999999999999888899999998 999998887653 555545776667889999
Q ss_pred EEecCCCchhhhhhcCCCCCCccceeEEEEe--ec-CCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCC-CCCCC-
Q 010765 192 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE--NC-QLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQ-KVPSI- 266 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~- 266 (502)
|+|||++|.||+.+++...+......++.+. .. ..........++.+.+++.++|.+++..+|.+.+..+ .....
T Consensus 167 VgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~~ 246 (538)
T PRK06183 167 VGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQLA 246 (538)
T ss_pred EecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhcC
Confidence 9999999999999988665544433333322 11 1111223455667778899999988877777765422 21122
Q ss_pred CchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHH
Q 010765 267 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVL 346 (502)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~L 346 (502)
..+.+.+.+..+.. .+.. .+..+...+......+++|++|||+|+|||||.++|++|||||+||+||.+|
T Consensus 247 ~~~~~~~~l~~~~~---~~~~-------~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~L 316 (538)
T PRK06183 247 SPENVWRLLAPWGP---TPDD-------AELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANL 316 (538)
T ss_pred CHHHHHHHHHhhCC---CCcc-------eEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHH
Confidence 23334444433210 0100 0001223344455567899999999999999999999999999999999999
Q ss_pred HHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhh---------------
Q 010765 347 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS--------------- 411 (502)
Q Consensus 347 a~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~--------------- 411 (502)
+|+|+.+. ++.+.+.+|++|+++|+|++..++..+..+.+++... ++....+|+..+..+.
T Consensus 317 a~kLa~~~---~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~ 392 (538)
T PRK06183 317 AWKLAAVL---RGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT-DRLAAALRDAVLRALNYLPPLKRYVLEMRFK 392 (538)
T ss_pred HHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHhhhcCcchhhhhhhccCC
Confidence 99998653 2344578999999999999999999999999988765 5667788887765432
Q ss_pred cCCCCchhHHHHh-ccCCCChHHHHHHHHH----------HHHHHHhhhccCC
Q 010765 412 LGGVFSTGPVALL-SGLNPRPLSLVLHFFA----------VAIYGVGRLLLPF 453 (502)
Q Consensus 412 ~g~~~~~~~~~~~-~~~~~~P~~~~~h~~~----------~~l~~~~~~~~~~ 453 (502)
...+|..+++... ....+.||.++|+.++ -|+.|.+|+|+.+
T Consensus 393 ~~~~y~~~~~~~~~~~~~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 393 PMPRLTGGAVVREGEAKHSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCCcccccccccCcccCCCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence 2334444332111 1124567999998654 3577888988864
No 8
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=3.9e-43 Score=374.35 Aligned_cols=386 Identities=19% Similarity=0.202 Sum_probs=252.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC--Cc-------ccchhhhcccc------c--cceEEEEECC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP--DR-------IVDCVEEIDAQ------Q--VLGYALFKDG 114 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~--~r-------~~~~l~~l~~~------~--~~g~~~~~~g 114 (502)
+.++||+||||||+||++|+.|+++|++|+|+||++... ++ ++++++.++.. . ......+..+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 356899999999999999999999999999999997542 22 22455444322 1 1111222222
Q ss_pred ceeeeeccCcC-C-CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 115 KSTRLSYPLEK-F-HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 115 ~~~~~~~~~~~-~-~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
+. ...++... . ...+....++|..+++.|.+.+.+.+++++++++ ++++.++++.+. +.+.+.+|. .+++||+|
T Consensus 101 ~~-~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~ad~v 177 (547)
T PRK08132 101 EE-VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGP-YTLEADWV 177 (547)
T ss_pred Ce-EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCc-EEEEeCEE
Confidence 11 11222111 1 1112234578999999999999988889999998 999988777543 445544554 35779999
Q ss_pred EEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcC---C-CcEEEEecCCCeEEEEEEeCCCC--CC
Q 010765 192 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILAD---P-SPILFYPISSTEVRCLVDVPGQK--VP 264 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~~~p~~~~~~~~~~~~~~~~--~~ 264 (502)
|+|||.+|.||+.+++...+.......+... ..+.+.+.....++.+ + ..+++.+..++..++.+...... ..
T Consensus 178 VgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (547)
T PRK08132 178 IACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPEA 257 (547)
T ss_pred EECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCchh
Confidence 9999999999999998766544332222221 1111222223344432 2 34455566555444444333211 11
Q ss_pred CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHH
Q 010765 265 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344 (502)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~ 344 (502)
..+.+++.+.+++.+.+..+ .+..+...+......+++|++|||+|+|||||.++|++|||||+||+||.
T Consensus 258 ~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~ 327 (547)
T PRK08132 258 EKKPENVIPRVRALLGEDVP----------FELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDAD 327 (547)
T ss_pred hcCHHHHHHHHHHHcCCCCC----------eeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHH
Confidence 12334444555544431110 00112334556667889999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhh---------------
Q 010765 345 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDY--------------- 409 (502)
Q Consensus 345 ~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~--------------- 409 (502)
+|+|+|+.+. .+.+.+++|++|+++|+|++..+...+..+...+... ++....+|+..+..
T Consensus 328 ~LawkLa~vl---~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 403 (547)
T PRK08132 328 NLAWKLALVL---RGRAPDSLLDSYASEREFAADENIRNSTRSTDFITPK-SPVSRLFRDAVLRLARDHPFARRLVNSGR 403 (547)
T ss_pred HHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CHHHHHHHHHHHhhhcccHHHHHHHhccc
Confidence 9999998764 3345678999999999999999998888777776543 33445556554332
Q ss_pred hhcCCCCchhHHHHhc----cCCCChHHHHHHHHH---------HHHHHHhhhccCCC
Q 010765 410 LSLGGVFSTGPVALLS----GLNPRPLSLVLHFFA---------VAIYGVGRLLLPFP 454 (502)
Q Consensus 410 ~~~g~~~~~~~~~~~~----~~~~~P~~~~~h~~~---------~~l~~~~~~~~~~~ 454 (502)
+..+..|.++++..-+ ...++||.|+||.|+ .|++|.+|+|+.+.
T Consensus 404 ~~~~~~y~~~~~~~~~~~~~~~~~~pG~r~p~~~~~~~~~~~~l~dl~g~~f~ll~~~ 461 (547)
T PRK08132 404 LSVPAVYADSPLNTPDGDAFAGGPVPGAPAPDAPVRADGEPGWLLDLLGGGFTLLLFG 461 (547)
T ss_pred cccCcccCCCCCCCCcccccCCCCCCCCCCCCCcccCCCCceEHHHhcCCCEEEEEec
Confidence 2346778777664211 135779999999886 78999999999754
No 9
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=5.8e-43 Score=359.36 Aligned_cols=346 Identities=21% Similarity=0.249 Sum_probs=232.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--------cc-------cchhhhcc------cc---ccceEE
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--------RI-------VDCVEEID------AQ---QVLGYA 109 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--------r~-------~~~l~~l~------~~---~~~g~~ 109 (502)
++||+||||||+|+++|+.|+++|++|+|+||++.+.. |. .++++.++ .. ...++.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 58999999999999999999999999999999865321 11 13344332 11 233444
Q ss_pred EEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 010765 110 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 188 (502)
Q Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a 188 (502)
++.......+.+.......+..++.++|..|++.|.+.+.+.+++++++++ +++++++++. |.+...+|++ ++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~--i~a 157 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE---AFLTLKDGSM--LTA 157 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe---EEEEEcCCCE--EEe
Confidence 443322222333222222333467899999999999999998889999998 9999877764 4455667764 569
Q ss_pred CEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCe-EEEEEEeCCCCCC--
Q 010765 189 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE-VRCLVDVPGQKVP-- 264 (502)
Q Consensus 189 d~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~-- 264 (502)
|+||||||.+|.||+.++++.....+...++... ..+.++......++..++++.++|..++. .++.+..+.+..+
T Consensus 158 ~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 237 (400)
T PRK08013 158 RLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRM 237 (400)
T ss_pred eEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHH
Confidence 9999999999999999998765554444443322 12223333334455666788999997654 4566655432111
Q ss_pred -CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHH
Q 010765 265 -SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 343 (502)
Q Consensus 265 -~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da 343 (502)
....+++.+.+...+. +.+. ...-......++.....+++|..|||+|+|||||.++|++|||||+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~----~~l~----~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da 309 (400)
T PRK08013 238 QQAPEEEFNRALAIAFD----NRLG----LCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDA 309 (400)
T ss_pred HcCCHHHHHHHHHHHHh----HhhC----ceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHH
Confidence 1122222222221111 0000 000001123456666678899999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcC
Q 010765 344 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLG 413 (502)
Q Consensus 344 ~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g 413 (502)
.+|+++|......+.......+|++|+++|++.+..++..++.+.++|... ++....+|+..+..+..-
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~-~~~~~~~R~~~l~~~~~~ 378 (400)
T PRK08013 310 AELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN-NPAKKLLRDIGLKLADTL 378 (400)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhC
Confidence 999999975421111111235899999999999999999999999998765 566788898887765443
No 10
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=365.78 Aligned_cols=378 Identities=19% Similarity=0.209 Sum_probs=254.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--c-------ccchhhhcccc--------ccceEEEEECCce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--R-------IVDCVEEIDAQ--------QVLGYALFKDGKS 116 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--r-------~~~~l~~l~~~--------~~~g~~~~~~g~~ 116 (502)
++||+||||||+||++|+.|+++|++|+||||.+.+.. + ++++++.++.. ......+....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~-- 79 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD-- 79 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc--
Confidence 48999999999999999999999999999999866432 2 22455444321 11122221111
Q ss_pred eeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEec
Q 010765 117 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 195 (502)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~AD 195 (502)
....+.... ...+..+.++|..+++.|.+.+++. ++++++++ ++++.++++++. +++.+.+|+ .+++||+||+||
T Consensus 80 ~~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~-~~i~a~~vVgAD 155 (493)
T PRK08244 80 TRLDFSALD-TSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDGVE-VVVRGPDGL-RTLTSSYVVGAD 155 (493)
T ss_pred ccCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCeEE-EEEEeCCcc-EEEEeCEEEECC
Confidence 111111111 1123456789999999999999887 79999997 999988777653 555555563 457899999999
Q ss_pred CCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC----CCCCCchH
Q 010765 196 GCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK----VPSISNGE 270 (502)
Q Consensus 196 G~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~ 270 (502)
|.+|.+|+.+++...+....+.++... ....+.......++.+.++++++|++++..++.+..+... ....+.++
T Consensus 156 G~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (493)
T PRK08244 156 GAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEE 235 (493)
T ss_pred CCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHH
Confidence 999999999998776555444444332 1111222234455677788999999988777766544211 11234555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhc
Q 010765 271 MANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLL 350 (502)
Q Consensus 271 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L 350 (502)
+.+.+++.+...+.. ....++..++.....+++|++|||+|+|||||.++|++|||||+||+||.+|+|+|
T Consensus 236 ~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~L 306 (493)
T PRK08244 236 LKTSLIRICGTDFGL---------NDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKL 306 (493)
T ss_pred HHHHHHHhhCCCCCc---------CCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHH
Confidence 666555544322110 01113345666667788999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhh--------------hcCCCC
Q 010765 351 KPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYL--------------SLGGVF 416 (502)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~--------------~~g~~~ 416 (502)
+.+. ++.+.+.+|++|+++|+|++..++..+..+..++..+ +....+|+.+...+ .++..|
T Consensus 307 a~~l---~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~--~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Y 381 (493)
T PRK08244 307 AAAI---KGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT--RPGLALRSMLSDLLGFPEVNRYLAGQISALDVHY 381 (493)
T ss_pred HHHH---cCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC--chhHHHHHHHHHHhcchHHHHHHHHHHhcCCccc
Confidence 8764 2334567999999999999999988888877777543 33455565433222 234455
Q ss_pred chhHHHHhccCCCChHHHHHHHHH----------HHHHHHh-hhccCCC
Q 010765 417 STGPVALLSGLNPRPLSLVLHFFA----------VAIYGVG-RLLLPFP 454 (502)
Q Consensus 417 ~~~~~~~~~~~~~~P~~~~~h~~~----------~~l~~~~-~~~~~~~ 454 (502)
..++. ....+.||.|+||.|+ .|+++.+ |+|+.+.
T Consensus 382 ~~~~~---~~~~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~~ll~~~ 427 (493)
T PRK08244 382 EPDAE---MPPHPLNGKRLPDLELTLSDGESERLYSLLHKGTFLLLSFG 427 (493)
T ss_pred CCCCc---cCCCCCCCCCCCCcceecCCCCceeHHHhhcCCeEEEEEec
Confidence 43221 0124678999999875 5677554 8877543
No 11
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=8.8e-42 Score=351.43 Aligned_cols=361 Identities=22% Similarity=0.257 Sum_probs=243.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC-CCCC------Cccc-------chhhhcc------c---cccceEE
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD-VTEP------DRIV-------DCVEEID------A---QQVLGYA 109 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~-~~~~------~r~~-------~~l~~l~------~---~~~~g~~ 109 (502)
..+||+||||||+|+++|+.|+++|++|+|+|++ +... .|.. ++++.++ . .+...+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 82 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME 82 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence 3589999999999999999999999999999996 2211 1211 3443332 2 1233455
Q ss_pred EEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 010765 110 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 188 (502)
Q Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a 188 (502)
++.......+.++......+..++.+++..+...|.+.+.+.+++++++++ ++++.++++. +.+..++|++ ++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~a 157 (405)
T PRK08850 83 VWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE---AWLTLDNGQA--LTA 157 (405)
T ss_pred EEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe---EEEEECCCCE--EEe
Confidence 554432223333333333334577889999999999999888789999987 9999877764 4455667764 569
Q ss_pred CEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCe-EEEEEEeCCCCC---
Q 010765 189 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE-VRCLVDVPGQKV--- 263 (502)
Q Consensus 189 d~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~--- 263 (502)
|+||+|||.+|.+|+.++++.....+...++... ..+.++....+.++++++++.++|+.++. .++.+..+.+..
T Consensus 158 ~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~ 237 (405)
T PRK08850 158 KLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEAL 237 (405)
T ss_pred CEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHH
Confidence 9999999999999999988765444333333332 22233344455677888899999998643 456666553211
Q ss_pred CCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHH
Q 010765 264 PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 343 (502)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da 343 (502)
...+.+++.+.+.+.+.+.+. .+ ........+|.....+.+|.++||+|+|||||.++|+.|||+|+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~-~~-------~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da 309 (405)
T PRK08850 238 LAMSDEQFNKALTAEFDNRLG-LC-------EVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDA 309 (405)
T ss_pred HcCCHHHHHHHHHHHHhhhhC-cE-------EEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHH
Confidence 122223333333332211110 00 0011223566666678899999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCCCCchhHHHH
Q 010765 344 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVAL 423 (502)
Q Consensus 344 ~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~ 423 (502)
.+|+|+|......+.....+.+|+.|+++|++++..++..+..+.++|..+ ++....+|+..+..+..-+....-.+..
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~ 388 (405)
T PRK08850 310 ASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-NPAKKLVRGIGMSLAGQLPGAKDEIMKR 388 (405)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999976432112223467999999999999999999999999999865 5567888998877665544333333333
Q ss_pred hccC
Q 010765 424 LSGL 427 (502)
Q Consensus 424 ~~~~ 427 (502)
..++
T Consensus 389 ~~g~ 392 (405)
T PRK08850 389 ALGL 392 (405)
T ss_pred HhCC
Confidence 3443
No 12
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=360.93 Aligned_cols=378 Identities=20% Similarity=0.206 Sum_probs=250.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--c-------ccchhhhcccc--------ccceEEEEECCc
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--R-------IVDCVEEIDAQ--------QVLGYALFKDGK 115 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--r-------~~~~l~~l~~~--------~~~g~~~~~~g~ 115 (502)
+++||+||||||+||++|+.|+++|++|+|+||++.+.. + ++++++.++.. ......++..+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 358999999999999999999999999999999865432 2 22555544321 122233333222
Q ss_pred e-eeeeccC--cC--CCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 010765 116 S-TRLSYPL--EK--FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 189 (502)
Q Consensus 116 ~-~~~~~~~--~~--~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad 189 (502)
. ....+.. .. ....+.+..++|..+++.|.+.+.+. ++++++++ ++++.++++.+. +++...++ ..+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~-~~~i~a~ 158 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAEL-GHRVEFGCELVGFEQDADGVT-ARVAGPAG-EETVRAR 158 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCcEE-EEEEeCCC-eEEEEeC
Confidence 1 1111110 00 01112346789999999999999988 79999997 999988877653 33433222 2357799
Q ss_pred EEEEecCCCchhhhhhcCCCCCCccce-eEEEEeecCCC--CCCceEEEEcCC-CcEEEEecCCCe-EEEEEEeCCCCCC
Q 010765 190 LTIVCDGCFSNLRRSLCKPKVDVPSCF-VGLVLENCQLP--FANHGHVILADP-SPILFYPISSTE-VRCLVDVPGQKVP 264 (502)
Q Consensus 190 ~vI~ADG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~p~~~~~-~~~~~~~~~~~~~ 264 (502)
+||+|||++|.||+++++...+..... ..+... ..++ .....+.+..+. +++.++|+.++. +++.+..+.+...
T Consensus 159 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 237 (502)
T PRK06184 159 YLVGADGGRSFVRKALGIGFPGETLGIDRMLVAD-VSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGEP 237 (502)
T ss_pred EEEECCCCchHHHHhCCCCcccCcCCCceEEEEE-EEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCccC
Confidence 999999999999999998776554332 333322 1111 122233444444 677888987653 3333334433333
Q ss_pred CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHH
Q 010765 265 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344 (502)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~ 344 (502)
..+.+++.+.++...... +..+. ...+...|+.....+++|++|||+|+|||||.++|++|||||+||+||.
T Consensus 238 ~~~~~~~~~~l~~~~~~~-~~~~~-------~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~ 309 (502)
T PRK06184 238 DLSADGLTALLAERTGRT-DIRLH-------SVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAY 309 (502)
T ss_pred CCCHHHHHHHHHHhcCCC-Cccee-------eeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHH
Confidence 455667777777654421 10110 1113345556666778999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCCCCchhHHHHh
Q 010765 345 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALL 424 (502)
Q Consensus 345 ~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~ 424 (502)
+|+|+|+.+. ++ +.+.+|++|+++|+|++..++..+..+++.+... . ..+.. ....++..|..+++...
T Consensus 310 ~LawkLa~vl---~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~-~----~~~~~--~~~~~~~~y~~~~~~~~ 378 (502)
T PRK06184 310 NLGWKLAAVL---AG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKRG-D----MRRGR--DVQQLDLGYRGSSLAVD 378 (502)
T ss_pred HHHHHHHHHH---cC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H----hhccc--chhcceeecCCCcccCC
Confidence 9999998764 22 4577999999999999999999998888776421 1 11111 12345566766665432
Q ss_pred c---cCCCChHHHHHHHHH----------HHHHH-HhhhccCC
Q 010765 425 S---GLNPRPLSLVLHFFA----------VAIYG-VGRLLLPF 453 (502)
Q Consensus 425 ~---~~~~~P~~~~~h~~~----------~~l~~-~~~~~~~~ 453 (502)
. ...++||.|+||.|+ .|+++ .+|+|+.+
T Consensus 379 ~~~~~~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~ 421 (502)
T PRK06184 379 GPERTGGLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAF 421 (502)
T ss_pred CcccCCCCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEe
Confidence 1 135789999999986 56774 57888864
No 13
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.3e-40 Score=345.35 Aligned_cols=352 Identities=18% Similarity=0.225 Sum_probs=239.7
Q ss_pred CcEEEECCCHHHHHHHHHHhh----CCCeEEEEecCCCCC--------------Cccc-------chhh------hcccc
Q 010765 55 TDVIIVGAGVAGAALAHTLGK----DGRRVHVIERDVTEP--------------DRIV-------DCVE------EIDAQ 103 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~----~G~~v~lvEr~~~~~--------------~r~~-------~~l~------~l~~~ 103 (502)
+||+||||||+|+++|+.|++ +|++|+|+||++.+. .|.. ++++ .+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 899999999954221 1211 3333 33221
Q ss_pred ---ccceEEEEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCC--CeEEEece-EEEEEee----CCeEEE
Q 010765 104 ---QVLGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLP--NVRLEQGT-VTSLLEE----NGTIKG 173 (502)
Q Consensus 104 ---~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~--~v~i~~~~-v~~~~~~----~~~v~~ 173 (502)
....+.++.......+.++... ...+.++.++|..+++.|.+.+.+.+ ++++++++ ++++..+ ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 2223333332222223333222 22345788999999999999999886 69999998 8988752 111124
Q ss_pred EEEEeCCCcEEEEecCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecC-CCCCCceEEEEcCCCcEEEEecCCCe
Q 010765 174 VQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQ-LPFANHGHVILADPSPILFYPISSTE 251 (502)
Q Consensus 174 v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 251 (502)
|++...+|++ ++||+||+|||++|.||+.+++...+..+...+++.. ... .++....+.++.+.+++.++|+.++.
T Consensus 160 v~v~~~~g~~--i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~ 237 (437)
T TIGR01989 160 VHITLSDGQV--LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNN 237 (437)
T ss_pred eEEEEcCCCE--EEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCC
Confidence 5666777874 6699999999999999999998876665544444332 111 23334445566788899999999888
Q ss_pred EEEEEEeCCCC---CCCCCchHHHHHHHHHcC---CCCCh---------h-----------------hHHHHHHHHhcCC
Q 010765 252 VRCLVDVPGQK---VPSISNGEMANYLKAMVA---PQVPP---------E-----------------LHEAFVSAVERGN 299 (502)
Q Consensus 252 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~---~~~~~---------~-----------------l~~~~~~~~~~~~ 299 (502)
.++++..+... ....+.+++.+.+.+.+. ...|. . +...+. .+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 316 (437)
T TIGR01989 238 STLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVI-GVVDKS 316 (437)
T ss_pred EEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhh-eeeccc
Confidence 78887765321 112344555555544330 00000 0 000000 011112
Q ss_pred eeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhH
Q 010765 300 IRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVAST 379 (502)
Q Consensus 300 ~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~ 379 (502)
...+++....+++|..+||+|+|||||.++|++|||||+||+||.+|+|+|......+.......+|++|+++|++++..
T Consensus 317 ~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~ 396 (437)
T TIGR01989 317 RAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVV 396 (437)
T ss_pred ceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 35677777788999999999999999999999999999999999999999986532111112356999999999999999
Q ss_pred HHHHHHHHHhhhccCChhHHHHHHHHHhhhhh
Q 010765 380 INTLAGALYKVFSSSPDQARKEMRQACFDYLS 411 (502)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 411 (502)
++..++.+.++|..+ .+....+|+..+..+.
T Consensus 397 v~~~t~~l~~l~~~~-~~~~~~~R~~~l~~~~ 427 (437)
T TIGR01989 397 LLGLVDKLHKLYATD-FPPVVALRTFGLNLTN 427 (437)
T ss_pred HHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhh
Confidence 999999999999875 4567788888776544
No 14
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=347.63 Aligned_cols=364 Identities=19% Similarity=0.215 Sum_probs=242.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC---Cccc-------chhhhccccc-c--ceEEEEECCceeeee
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP---DRIV-------DCVEEIDAQQ-V--LGYALFKDGKSTRLS 120 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~---~r~~-------~~l~~l~~~~-~--~g~~~~~~g~~~~~~ 120 (502)
++||+||||||+|+++|+.|+++|++|+|+||.+.+. .|.. ++++.++... . .+......+ .....
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~-~~~~~ 81 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTG-FAATR 81 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccce-eeeEe
Confidence 5899999999999999999999999999999986532 2322 3444332210 0 000000000 00111
Q ss_pred ccCcCCC-CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC
Q 010765 121 YPLEKFH-ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 198 (502)
Q Consensus 121 ~~~~~~~-~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~ 198 (502)
....... ..+.++.+.|..+++.|.+.+++. ++++++++ ++++.++++. |.+...+|+ +++||+||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~---v~v~~~~g~--~i~a~~vVgADG~~ 155 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQDDTG---VDVELSDGR--TLRAQYLVGCDGGR 155 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCe---EEEEECCCC--EEEeCEEEEecCCC
Confidence 1111111 124567789999999999999987 79999998 9999888774 444556665 46799999999999
Q ss_pred chhhhhhcCCCCCCccceeEEEEeecCCCCCCceEEEEcCCCcEEEEecC-CCeEEEEEEeCCCC-CCCCCchHHHHHHH
Q 010765 199 SNLRRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPIS-STEVRCLVDVPGQK-VPSISNGEMANYLK 276 (502)
Q Consensus 199 S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 276 (502)
|.+|+.+++..++.......++.. ..++.++.......+.++..+.|.. ++..++.+..+... ....+.+++.+.++
T Consensus 156 S~vR~~lgi~~~g~~~~~~~~~~d-v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (488)
T PRK06834 156 SLVRKAAGIDFPGWDPTTSYLIAE-VEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALI 234 (488)
T ss_pred CCcHhhcCCCCCCCCcceEEEEEE-EEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 999999998887766544444432 2332211122233444566667765 55555555543221 12334456666666
Q ss_pred HHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCCC
Q 010765 277 AMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDF 356 (502)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~ 356 (502)
+.....+... ...++..++.....+++|++|||+|+|||||.++|++|||||+||+||.||+|+|+.+.
T Consensus 235 ~~~g~~~~~~---------~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl-- 303 (488)
T PRK06834 235 AVYGTDYGIH---------SPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVV-- 303 (488)
T ss_pred HhhCCCCccc---------cceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHH--
Confidence 5444332211 11244667777788999999999999999999999999999999999999999998764
Q ss_pred CChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCCCCchhHHHHhcc---------C
Q 010765 357 NDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFSTGPVALLSG---------L 427 (502)
Q Consensus 357 ~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~~~~~~~~~~---------~ 427 (502)
.+.+.+.+|++|+++|+|++..++..+..+..++. +++....+|+..+.++..... .+.....+++ -
T Consensus 304 -~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~--~~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~~~y~~~~~ 379 (488)
T PRK06834 304 -KGTSPESLLDTYHAERHPVAARVLRNTMAQVALLR--PDDRTEALRDIVAELLGMDEP-RKRIAAMMSGLDIHYDLGEG 379 (488)
T ss_pred -cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCCcccCCCCC
Confidence 33456789999999999999999998888877775 355578888887766543322 2222222222 1
Q ss_pred CCChHHHHHHHHH
Q 010765 428 NPRPLSLVLHFFA 440 (502)
Q Consensus 428 ~~~P~~~~~h~~~ 440 (502)
.+.+|.|+|+.++
T Consensus 380 ~~~~G~~~p~~~~ 392 (488)
T PRK06834 380 HPLLGRRMPDLDL 392 (488)
T ss_pred CCCCcCCCCCccc
Confidence 3456888887654
No 15
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.6e-40 Score=341.91 Aligned_cols=352 Identities=19% Similarity=0.231 Sum_probs=229.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC----Cccc-------chhhhccc------c--ccceEEE
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP----DRIV-------DCVEEIDA------Q--QVLGYAL 110 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~----~r~~-------~~l~~l~~------~--~~~g~~~ 110 (502)
....++||+||||||+|+++|+.|+++|++|+|+||++... ++.. ++++.++. . ......+
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 93 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRL 93 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEE
Confidence 34557899999999999999999999999999999997642 1211 33433322 1 1222333
Q ss_pred EECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 010765 111 FKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 189 (502)
Q Consensus 111 ~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad 189 (502)
+.........+..........++...+..|.+.|.+.+.+.+++++++++ +++++++++.+. |++.+ +++..+++||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~-~~~~~~i~ad 171 (415)
T PRK07364 94 SDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI-EGKQQTLQSK 171 (415)
T ss_pred EeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc-CCcceEEeee
Confidence 32222122233322222223345555667999999999888889999887 999987776542 44432 3333467899
Q ss_pred EEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC---CCC
Q 010765 190 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VPS 265 (502)
Q Consensus 190 ~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~ 265 (502)
+||+|||.+|.+|+.+++...+.......+.+. ..+.+........+.+.++++++|++++..++++..+.+. ...
T Consensus 172 lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 251 (415)
T PRK07364 172 LVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALLA 251 (415)
T ss_pred EEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHC
Confidence 999999999999999987654433222222221 1222222222223445678899999988777766554221 112
Q ss_pred CCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHH
Q 010765 266 ISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 345 (502)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~ 345 (502)
.+.++..+.+++.+.+... ++. .......++.....+.+|..+||+|+|||||.++|++|||+|+||+||..
T Consensus 252 ~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~ 323 (415)
T PRK07364 252 LPEAEFLAELQQRYGDQLG-KLE-------LLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAA 323 (415)
T ss_pred CCHHHHHHHHHHHhhhhhc-Cce-------ecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHH
Confidence 2334444444443322111 110 01133456666667788999999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhc
Q 010765 346 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 412 (502)
Q Consensus 346 La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 412 (502)
|+++|.............++|+.|+++|++.+..++..+..+.++|... ++....+|+..++.+..
T Consensus 324 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 389 (415)
T PRK07364 324 LAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQ-WWPLVVVRRLGLWLLRH 389 (415)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhh
Confidence 9999975421111111247999999999999999999999999998765 45567788887766543
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.9e-40 Score=335.39 Aligned_cols=331 Identities=18% Similarity=0.276 Sum_probs=228.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC------Cccc-------chhhhccc------c--ccceEEEEEC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP------DRIV-------DCVEEIDA------Q--QVLGYALFKD 113 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~------~r~~-------~~l~~l~~------~--~~~g~~~~~~ 113 (502)
+||+||||||+|+++|+.|++.|++|+|+|+.+... .+.. ++++.++. . ++..+.++..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 699999999999999999999999999999974321 1211 33333321 1 2344445443
Q ss_pred CceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEE
Q 010765 114 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 192 (502)
Q Consensus 114 g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI 192 (502)
.....+.++.. .....++.++|..|++.|.+.+.+.+++++++++ ++++.++++++ .+...++ +++||+||
T Consensus 82 ~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v---~v~~~~~---~~~adlvI 153 (374)
T PRK06617 82 KASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYS---IIKFDDK---QIKCNLLI 153 (374)
T ss_pred CCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeE---EEEEcCC---EEeeCEEE
Confidence 22222333321 2234578999999999999999998889999887 99998877753 3445444 46699999
Q ss_pred EecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCe-EEEEEEeCCCCC---CCCC
Q 010765 193 VCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE-VRCLVDVPGQKV---PSIS 267 (502)
Q Consensus 193 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~---~~~~ 267 (502)
+|||.+|.+|+.++++.....+ ..++.+. ..+.++.+....++...++++++|+.++. ..++|..+.+.. ....
T Consensus 154 gADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~ 232 (374)
T PRK06617 154 ICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNLP 232 (374)
T ss_pred EeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCC
Confidence 9999999999999876533332 3333332 22233333344566677889999998875 355555542111 1111
Q ss_pred chHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHH
Q 010765 268 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 347 (502)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La 347 (502)
.+++.+.+.....+.+ . .......+..++.....+.+|..|||+|+|||||.++|+.|||+|+||+||.+|+
T Consensus 233 ~~~~~~~~~~~~~~~~----~----~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La 304 (374)
T PRK06617 233 VEEVRFLTQRNAGNSL----G----KITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILS 304 (374)
T ss_pred HHHHHHHHHHhhchhc----C----ceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHH
Confidence 2233322222211111 0 0011123566777777889999999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcC
Q 010765 348 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLG 413 (502)
Q Consensus 348 ~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g 413 (502)
++|.. ..+|+.|+++|++++..++..++.+.++|... .+....+|+..+..+..-
T Consensus 305 ~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~-~~~~~~~R~~~l~~~~~~ 359 (374)
T PRK06617 305 MIVSN----------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY-SKNLRCLRQIGFKVINNF 359 (374)
T ss_pred HHHcC----------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcC
Confidence 99842 14899999999999999999999999999865 445778888887655443
No 17
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2.1e-40 Score=341.34 Aligned_cols=349 Identities=19% Similarity=0.284 Sum_probs=231.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC----------CCc-------ccchhh------hcccc---ccce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE----------PDR-------IVDCVE------EIDAQ---QVLG 107 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~----------~~r-------~~~~l~------~l~~~---~~~g 107 (502)
++||+||||||+|+++|+.|+++|++|+|+|+.+.. ..+ ..++++ .+... +...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999998621 111 113333 33211 2233
Q ss_pred EEEEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 010765 108 YALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 186 (502)
Q Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v 186 (502)
+.++.......+.+.......+..++.++|..+.+.|.+.+.+. ++++++++ ++++.+++++ +.+...+|++ +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~~--~ 155 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRSGDD---WLLTLADGRQ--L 155 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcC-CCEEEcCCEEEEEEEcCCe---EEEEECCCCE--E
Confidence 34443322223333322222234467899999999999999887 79999987 9999887764 4455667764 5
Q ss_pred ecCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCe----EEEEEEeCCC
Q 010765 187 YAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE----VRCLVDVPGQ 261 (502)
Q Consensus 187 ~ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~~~ 261 (502)
+||+||+|||.+|.+|+.+++......+...+++.. ....++....+.++.+.++++++|++++. ..+.+..+.+
T Consensus 156 ~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~ 235 (405)
T PRK05714 156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPE 235 (405)
T ss_pred EeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHH
Confidence 699999999999999999987654444333333322 11222222334445777899999997432 1223333321
Q ss_pred CC---CCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhH
Q 010765 262 KV---PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTV 338 (502)
Q Consensus 262 ~~---~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~ 338 (502)
.. ...+.+++.+.+.+.+.+. + .......+...+++....+.+|.++||+|+|||||.++|+.|||+|+
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~----~----~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~ 307 (405)
T PRK05714 236 EAERLMALDDDAFCAALERAFEGR----L----GEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNL 307 (405)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH----h----CCceecCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccH
Confidence 10 1122223333333322111 1 11111233456777777888999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCCCCc
Q 010765 339 ALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGGVFS 417 (502)
Q Consensus 339 al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~~~~ 417 (502)
||+||.+|+++|......+.......+|+.|+++|++++..++..++.+.++|..+ +.....+|+..+..+..-+...
T Consensus 308 al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k 385 (405)
T PRK05714 308 GFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQAD-PLPLRWLRNTGLKLVDQMPEAK 385 (405)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHH
Confidence 99999999999975321111122357999999999999999999999999999875 4457888998877655444333
No 18
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=3.3e-40 Score=354.04 Aligned_cols=332 Identities=18% Similarity=0.230 Sum_probs=224.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEecCCCCCC---------cccchhhhcccc--------ccceEEEEEC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTEPD---------RIVDCVEEIDAQ--------QVLGYALFKD 113 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~-G~~v~lvEr~~~~~~---------r~~~~l~~l~~~--------~~~g~~~~~~ 113 (502)
..++||+||||||+||++|+.|+++ |++|+||||++.+.. +++++|+.++.. ......++..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 4478999999999999999999995 999999999865421 233555544322 2223344432
Q ss_pred Cce--eeee----cc-CcCCCCCCcceeecchHHHHHHHHHHHcCCC-eEEEece-EEEEEeeCC--eEEEEEEEeC---
Q 010765 114 GKS--TRLS----YP-LEKFHADVSGRSFHNGRFIQRMREKAASLPN-VRLEQGT-VTSLLEENG--TIKGVQYKTK--- 179 (502)
Q Consensus 114 g~~--~~~~----~~-~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~-v~i~~~~-v~~~~~~~~--~v~~v~~~~~--- 179 (502)
+.. ..+. .. ............++|.++++.|.+.+.+.++ +++++++ ++++.++++ ..+.|++.+.
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 211 0010 00 0000111112578999999999999988753 6788888 999987642 2123555543
Q ss_pred -CCcEEEEecCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe---ecCCCCCCceEEEE-cCCCcEEEEecCCCe-EE
Q 010765 180 -DGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE---NCQLPFANHGHVIL-ADPSPILFYPISSTE-VR 253 (502)
Q Consensus 180 -~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~-~~ 253 (502)
+|+..+++|||||||||++|.||+++++...+......+.+.. ..++|.......+. .+.+.+.++|..++. ++
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r 269 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGYLVR 269 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCeEEE
Confidence 4655678999999999999999999998776654433332222 23444433222233 456889999998874 56
Q ss_pred EEEEeCC---CC---CCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCC----------CCCC
Q 010765 254 CLVDVPG---QK---VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQ----------PTPG 317 (502)
Q Consensus 254 ~~~~~~~---~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~r 317 (502)
+++.+.. +. ....+.+++.+.+++.+.|... ++. ...++..++...+.+++| +.||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~-~~~-------~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gR 341 (634)
T PRK08294 270 LYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTL-DVK-------EVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPR 341 (634)
T ss_pred EEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCC-cee-------EEeEEecccccceehhhcccccccccccccCC
Confidence 6554421 11 1234566666666665544311 111 112344555556666666 4699
Q ss_pred EEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccC
Q 010765 318 ALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS 394 (502)
Q Consensus 318 v~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~ 394 (502)
|+|+|||||.++|.+|||||+||+||.+|+|+|+.+. .+.+.+++|++|+.+|+|++..++..+..+.++|...
T Consensus 342 VfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl---~g~a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~ 415 (634)
T PRK08294 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVL---SGRSPPELLHTYSAERQAIAQELIDFDREWSTMMAAP 415 (634)
T ss_pred EEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999764 3445678999999999999999999999999988764
No 19
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=7e-40 Score=342.16 Aligned_cols=321 Identities=18% Similarity=0.186 Sum_probs=224.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC--Ccc-------cchhhhccc------c--ccceEEEEEC
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP--DRI-------VDCVEEIDA------Q--QVLGYALFKD 113 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~--~r~-------~~~l~~l~~------~--~~~g~~~~~~ 113 (502)
.+..+||+||||||+||++|+.|+++|++|+|+||.+.+. .+. .++++.++. . ......++.+
T Consensus 2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (487)
T PRK07190 2 STQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN 81 (487)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC
Confidence 3556899999999999999999999999999999996542 221 244443322 1 1222233333
Q ss_pred Cceeeeecc-CcCC--CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 010765 114 GKSTRLSYP-LEKF--HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 189 (502)
Q Consensus 114 g~~~~~~~~-~~~~--~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad 189 (502)
+........ .... ...+....+.|..+++.|.+++.+. |+++++++ |+++.++++++ .+...+|+ +++|+
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~v---~v~~~~g~--~v~a~ 155 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAGC---LTTLSNGE--RIQSR 155 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCee---EEEECCCc--EEEeC
Confidence 332111100 0111 1122335688999999999999988 89999998 99998887754 33345665 46799
Q ss_pred EEEEecCCCchhhhhhcCCCCCCccceeEEEEe---ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCCCC
Q 010765 190 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE---NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSI 266 (502)
Q Consensus 190 ~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 266 (502)
+||+|||.+|.+|++++++..+......+.+.. ..++|.......+..+.+.+.++|..++..++++..+ .+..
T Consensus 156 ~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~---~~~~ 232 (487)
T PRK07190 156 YVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMD---TKDF 232 (487)
T ss_pred EEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcC---CCCC
Confidence 999999999999999999876654333333221 2233432223334456678888999877656554332 2345
Q ss_pred CchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCC-CCCEEEEeCCCCCCCCCCchhHhHHHHHHHH
Q 010765 267 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQP-TPGALLMGDAFNMRHPLTGGGMTVALSDIVV 345 (502)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~ 345 (502)
+.++..+.+++.+.+. .+. ..+..++..|++..+.+++|+ +|||||+|||||.++|.+|||||+||+||.|
T Consensus 233 t~~~~~~~l~~~~~~~---~~~-----~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~n 304 (487)
T PRK07190 233 TLEQAIAKINHAMQPH---RLG-----FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFN 304 (487)
T ss_pred CHHHHHHHHHHhcCCC---CCc-----eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHH
Confidence 5666777676654432 110 011235577888899999997 7999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhh
Q 010765 346 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVF 391 (502)
Q Consensus 346 La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~ 391 (502)
|+|+|+.+. ++.+.+.+|++|+.||+|++..+...+..+.++.
T Consensus 305 L~wkLa~v~---~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 305 LIWKLNMVI---HHGASPELLQSYEAERKPVAQGVIETSGELVRST 347 (487)
T ss_pred HHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998764 3344678999999999999999999888776654
No 20
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.3e-39 Score=332.73 Aligned_cols=340 Identities=20% Similarity=0.238 Sum_probs=231.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC--------Ccc-------cchhhhcccc---------ccceEE
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP--------DRI-------VDCVEEIDAQ---------QVLGYA 109 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~--------~r~-------~~~l~~l~~~---------~~~g~~ 109 (502)
.+||+||||||+|+++|+.|++.|++|+|+|+.+... .|. .++++.++.. ....+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 4799999999999999999999999999999875211 121 1444444321 122223
Q ss_pred EEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 010765 110 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 188 (502)
Q Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a 188 (502)
.+..+. ....++.........|+.+.+..|...|.+++.+.+++++++++ +++++++++. +++..++|.+ ++|
T Consensus 83 ~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~---~~v~~~~g~~--~~~ 156 (384)
T PRK08849 83 TWEHPE-CRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG---NRVTLESGAE--IEA 156 (384)
T ss_pred EEeCCC-ceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe---EEEEECCCCE--EEe
Confidence 332221 12222222222233467788888999999998888899999998 9999887764 4455677764 559
Q ss_pred CEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC---CC
Q 010765 189 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VP 264 (502)
Q Consensus 189 d~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 264 (502)
|+||+|||.+|.+|+.+++......+...++++. ..+.++.+..+.++.+.++..++|+.++..++.+..+... ..
T Consensus 157 ~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~ 236 (384)
T PRK08849 157 KWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLS 236 (384)
T ss_pred eEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHH
Confidence 9999999999999999987654444333333332 2233344444555666677777899776555555433211 11
Q ss_pred CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHH
Q 010765 265 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344 (502)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~ 344 (502)
..+.++..+.+.+.+.+.+. ++ +......++.....+++|..|||+|+|||||.++|++|||+|+||+||.
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~-~~--------~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~ 307 (384)
T PRK08849 237 AMNPEQLRSEILRHFPAELG-EI--------KVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVD 307 (384)
T ss_pred cCCHHHHHHHHHHHhhhhhC-cE--------EeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHH
Confidence 22334444444443221111 11 1123455666667888999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCC
Q 010765 345 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 414 (502)
Q Consensus 345 ~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 414 (502)
+|+++|... +...+++|+.|+++|+++...++..++.+.++|+.. ......+|+..+..+...+
T Consensus 308 ~L~~~l~~~-----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~ 371 (384)
T PRK08849 308 VLLAETEKQ-----GVLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNS-LTPLKFVRNAALKLAENSG 371 (384)
T ss_pred HHHHHHHhc-----CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccH
Confidence 999998642 123567999999999999999999999999999876 3456778888776655443
No 21
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=7.1e-40 Score=335.98 Aligned_cols=346 Identities=20% Similarity=0.295 Sum_probs=235.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC-------ccc-------chhhhccc------c---ccceE
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-------RIV-------DCVEEIDA------Q---QVLGY 108 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~-------r~~-------~~l~~l~~------~---~~~g~ 108 (502)
...+||+||||||+|+++|+.|+++|++|+|+||++.+.. |.. ++++.++. . ....+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 4568999999999999999999999999999999864321 111 33333321 1 22233
Q ss_pred EEEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEe
Q 010765 109 ALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAY 187 (502)
Q Consensus 109 ~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ 187 (502)
.++..+....+.++.........++.++|..|.+.|.+.+++. |+++++++ ++++.++++. +.+..++|++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~ 157 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAA-GVQLHCPARVVALEQDADR---VRLRLDDGRR--LE 157 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeEEEEEecCCe---EEEEECCCCE--EE
Confidence 3443322222333332233334578899999999999999887 89999987 9999877764 3455566764 56
Q ss_pred cCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCC---
Q 010765 188 APLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKV--- 263 (502)
Q Consensus 188 ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--- 263 (502)
+|+||+|||.+|.+|+.+++......+...++... ..+.+.....+..+.+++++.++|..++..++++.++.+..
T Consensus 158 a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~ 237 (392)
T PRK08773 158 AALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERV 237 (392)
T ss_pred eCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHH
Confidence 99999999999999999987654433333444332 22334444444556777889999999887777777653211
Q ss_pred CCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHH
Q 010765 264 PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 343 (502)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da 343 (502)
...+.++..+.+.+.+.+.+. .+. .......++.....+++|..+||+|+|||||.++|++|||+|+||+||
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da 309 (392)
T PRK08773 238 LALDEAAFSRELTQAFAARLG-EVR-------VASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDV 309 (392)
T ss_pred HcCCHHHHHHHHHHHHhhhhc-CeE-------ecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHH
Confidence 112222333333332221111 000 011223466666678899999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhc
Q 010765 344 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 412 (502)
Q Consensus 344 ~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 412 (502)
.+|+++|.+......+.....+|+.|+++|+++...+......+.++|..+ .+....+|+..+..+..
T Consensus 310 ~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~-~~~~~~~r~~~l~~~~~ 377 (392)
T PRK08773 310 AALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSND-EMHLTLLRGSVLGLAGK 377 (392)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhh
Confidence 999999986532222223457999999999999887777778889999876 45678888887765543
No 22
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=4.8e-39 Score=329.40 Aligned_cols=342 Identities=23% Similarity=0.315 Sum_probs=224.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC---------cccchhhhccc------c---ccceEEEEEC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD---------RIVDCVEEIDA------Q---QVLGYALFKD 113 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~---------r~~~~l~~l~~------~---~~~g~~~~~~ 113 (502)
+.++||+||||||+||++|+.|+++|++|+|+||++.... +..++++.++. . ....+.++.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHD 82 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecC
Confidence 5568999999999999999999999999999999976532 12244443332 1 1122333334
Q ss_pred CceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEE
Q 010765 114 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 192 (502)
Q Consensus 114 g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI 192 (502)
++.. ..++............++|..|++.|.+.+...+++++++++ ++++.++++++ .+.++.++|++ +++|+||
T Consensus 83 g~~~-~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~~~v~~~~g~~--~~~~~vI 158 (388)
T PRK07045 83 KELI-ASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGT-VTSVTLSDGER--VAPTVLV 158 (388)
T ss_pred CcEE-EEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCc-EEEEEeCCCCE--EECCEEE
Confidence 4321 112211111111124678999999999999887899999998 99998765542 13345567764 5699999
Q ss_pred EecCCCchhhhhh-cCCCCC--Ccc-ceeEEEEeecCCCCCCceEEEEcC-CCcEEEEecCCCeEEEEEEeCCCCCCC--
Q 010765 193 VCDGCFSNLRRSL-CKPKVD--VPS-CFVGLVLENCQLPFANHGHVILAD-PSPILFYPISSTEVRCLVDVPGQKVPS-- 265 (502)
Q Consensus 193 ~ADG~~S~vR~~l-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~-- 265 (502)
+|||.+|.+|+.+ ++.... +.. ...+........ +.....++.+ .++.+++|.+++..++.+.++.+...+
T Consensus 159 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 236 (388)
T PRK07045 159 GADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSV--RECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYL 236 (388)
T ss_pred ECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCc--cccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhcc
Confidence 9999999999975 443322 111 122222211111 2223344544 456678999888777877766433222
Q ss_pred --CCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHH
Q 010765 266 --ISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 343 (502)
Q Consensus 266 --~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da 343 (502)
...+++.+.+.+.+.+. +.+.+........+..+++....+++|..|||+|+|||||.++|++|||+|+||+||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da 312 (388)
T PRK07045 237 ADTTRTKLLARLNEFVGDE----SADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDA 312 (388)
T ss_pred CCCCHHHHHHHHhhhcCcc----chHHHhccCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHH
Confidence 22334444444433222 222221111112233345566677889999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 010765 344 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQAC 406 (502)
Q Consensus 344 ~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~ 406 (502)
.+|+++|.... .+....+++|+.|+++|++++..++..++.+.+.|..+ .+..+..|.++
T Consensus 313 ~~La~~L~~~~--~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 372 (388)
T PRK07045 313 GELGACLDLHL--SGQIALADALERFERIRRPVNEAVISYGHALATTYHDR-AALVANFRSQL 372 (388)
T ss_pred HHHHHHHHhhc--CCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc-hhHHHHHHhhh
Confidence 99999998653 12345788999999999999999999999988888754 45556566655
No 23
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=331.92 Aligned_cols=355 Identities=20% Similarity=0.219 Sum_probs=240.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--cc-------cchhhhccc---------cccceEEEEE
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--RI-------VDCVEEIDA---------QQVLGYALFK 112 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--r~-------~~~l~~l~~---------~~~~g~~~~~ 112 (502)
...++||+||||||+|+++|+.|+++|++|+|+|+++.... +. .++++.++. .....+.++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE
Confidence 35679999999999999999999999999999999854321 11 134443322 1233344444
Q ss_pred CCce-eeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCE
Q 010765 113 DGKS-TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 190 (502)
Q Consensus 113 ~g~~-~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~ 190 (502)
.+.. ..+.+..... ..+.++.+++..+.+.|.+.+.+.+++++++++ ++++..+++.+.+|.+...+|+ .+++||+
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-~~i~a~~ 160 (407)
T PRK06185 83 GGRTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-GEIRADL 160 (407)
T ss_pred CCeEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-EEEEeCE
Confidence 4432 1222221111 123456789999999999999887889999887 9999888888777777666664 3577999
Q ss_pred EEEecCCCchhhhhhcCCCCCCccceeEEEEeecCCCC--CCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCCCCCc
Q 010765 191 TIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLPF--ANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISN 268 (502)
Q Consensus 191 vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 268 (502)
||+|||.+|.+|+.++++............+. ...+. ......++.++++++++|.+ +..++.+..+.+.......
T Consensus 161 vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~ 238 (407)
T PRK06185 161 VVGADGRHSRVRALAGLEVREFGAPMDVLWFR-LPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYAALRA 238 (407)
T ss_pred EEECCCCchHHHHHcCCCccccCCCceeEEEe-cCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCchhhhh
Confidence 99999999999999988665444333222222 22211 12234466778889999987 6566666666443322222
Q ss_pred hHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHH
Q 010765 269 GEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRN 348 (502)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~ 348 (502)
...+++.+. +... .+.+.+.+...........++.....+.+|..+|++|+|||||.+||++|||+|+||+||..|++
T Consensus 239 ~~~~~~~~~-~~~~-~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~ 316 (407)
T PRK06185 239 AGLEAFRER-VAEL-APELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAAN 316 (407)
T ss_pred hhHHHHHHH-HHHh-CccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHH
Confidence 222222222 1111 12222223222223345667777778889999999999999999999999999999999999999
Q ss_pred hcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCC-hhHHHHHHHHHhhhhhcC
Q 010765 349 LLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSP-DQARKEMRQACFDYLSLG 413 (502)
Q Consensus 349 ~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~-~~~~~~lr~~~~~~~~~g 413 (502)
.|.+..... +..+..|+.|+++|++....++.+++.+.++|..+. .+....+|+..+..+..-
T Consensus 317 ~l~~~~~~~--~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~ 380 (407)
T PRK06185 317 ILAEPLRRG--RVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRL 380 (407)
T ss_pred HHHHHhccC--CccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhC
Confidence 998653222 223489999999999999999999999999987653 144566666665555443
No 24
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=2.1e-39 Score=332.15 Aligned_cols=345 Identities=17% Similarity=0.218 Sum_probs=237.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC-Cccc-------chhhhccc------c--ccceEEEEEC
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIV-------DCVEEIDA------Q--QVLGYALFKD 113 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~-~r~~-------~~l~~l~~------~--~~~g~~~~~~ 113 (502)
|.+..+||+||||||+|+++|+.|+++|++|+|+||++... .|.. ++++.++. . ......++..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDA 82 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeC
Confidence 55677899999999999999999999999999999986542 2322 33333321 1 2334444443
Q ss_pred Ccee----eeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 010765 114 GKST----RLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 188 (502)
Q Consensus 114 g~~~----~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a 188 (502)
+... ...+........+.++.+++..+.+.|.+.+.+.+++. ++++ |+++.++++.+ .+..++|++ ++|
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~---~v~~~~g~~--~~a 156 (388)
T PRK07494 83 TGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEV---TVTLADGTT--LSA 156 (388)
T ss_pred CCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeE---EEEECCCCE--EEE
Confidence 2211 11122122233445788999999999999999887777 6666 99998877753 455566764 569
Q ss_pred CEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC---CC
Q 010765 189 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VP 264 (502)
Q Consensus 189 d~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~ 264 (502)
|+||+|||.+|.+|+.++++.....+...++.+. ....++......++.+.+++.++|+.++..++++..+.+. ..
T Consensus 157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~ 236 (388)
T PRK07494 157 RLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLL 236 (388)
T ss_pred eEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHH
Confidence 9999999999999999988754444333444332 2233443434456667788999999877666666544221 11
Q ss_pred CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHH
Q 010765 265 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344 (502)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~ 344 (502)
..+.+++.+.+.+.+.+.+. ..........++.....+++|..+||+|+|||||.++|++|||||+||+||.
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~ 308 (388)
T PRK07494 237 ALSDAALSAAIEERMQSMLG--------KLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVA 308 (388)
T ss_pred cCCHHHHHHHHHHHHhhhcC--------CeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHH
Confidence 22333444433332211110 0011123456777777778899999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhc
Q 010765 345 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 412 (502)
Q Consensus 345 ~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 412 (502)
+|+++|.... .+...+.+|+.|+++|++....+...+..+.++|... .+....+|+..+..+..
T Consensus 309 ~La~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~ 372 (388)
T PRK07494 309 TLVEIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD-FLPVQDLRAAGLHLLYS 372 (388)
T ss_pred HHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhh
Confidence 9999998642 2334578999999999999988888888899998876 45577888887765543
No 25
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=7.7e-39 Score=328.56 Aligned_cols=343 Identities=15% Similarity=0.181 Sum_probs=232.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCC----CeEEEEecCCCCCC----ccc-------chhhhcccc-----ccceEE
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDG----RRVHVIERDVTEPD----RIV-------DCVEEIDAQ-----QVLGYA 109 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G----~~v~lvEr~~~~~~----r~~-------~~l~~l~~~-----~~~g~~ 109 (502)
|.+.++||+||||||+|+++|+.|+++| ++|+|+|+.+.+.. |.. ++++.++.. +.....
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~ 86 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEE
Confidence 6677899999999999999999999987 47999999853221 221 555555432 222333
Q ss_pred EEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc-EEEEe
Q 010765 110 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQ-ELRAY 187 (502)
Q Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~-~~~v~ 187 (502)
++..+......+...+...+..++.++|..|++.|.+.+.+. ++++++++ ++++.+++++ |++...+|+ ..+++
T Consensus 87 ~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~~---v~v~~~~~~g~~~i~ 162 (398)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGT-PVRWLTSTTAHAPAQDADG---VTLALGTPQGARTLR 162 (398)
T ss_pred EecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCCe---EEEEECCCCcceEEe
Confidence 333232222223333333444578999999999999999998 68999887 8888777664 444444331 13578
Q ss_pred cCEEEEecCC-CchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCe---EEEEEEeCCCC
Q 010765 188 APLTIVCDGC-FSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE---VRCLVDVPGQK 262 (502)
Q Consensus 188 ad~vI~ADG~-~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~ 262 (502)
||+||+|||. +|.+|+.+++......+...++... ..+.+++...+..+...+++.++|..++. ..+++..+.+.
T Consensus 163 a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~ 242 (398)
T PRK06996 163 ARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDE 242 (398)
T ss_pred eeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHH
Confidence 9999999997 5788998887665544444444332 22223333344455677888899987654 44444444221
Q ss_pred ---CCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHH
Q 010765 263 ---VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVA 339 (502)
Q Consensus 263 ---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~a 339 (502)
....+.++..+.+.+.+.+.+. .+. .......++.....+.+|..|||+|+|||||.++|+.|||+|+|
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~a 314 (398)
T PRK06996 243 AARRAALPDDAFLAELGAAFGTRMG-RFT-------RIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLG 314 (398)
T ss_pred HHHHHcCCHHHHHHHHHHHhccccC-ceE-------EecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHH
Confidence 1123334444555444332221 110 11123356667777889999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhh
Q 010765 340 LSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS 411 (502)
Q Consensus 340 l~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 411 (502)
|+||.+|+++|.... ..+.+|++|+++|++++..++..++.+.++|..+ .+....+|+..+..+.
T Consensus 315 i~Da~~La~~L~~~~------~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~-~~~~~~~R~~~l~~~~ 379 (398)
T PRK06996 315 LRDAHTLADALSDHG------ATPLALATFAARRALDRRVTIGATDLLPRLFTVD-SRPLAHLRGAALTALE 379 (398)
T ss_pred HHHHHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHhHHHHHHh
Confidence 999999999996421 1346799999999999999999999999999865 4456778887765543
No 26
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=7.9e-39 Score=328.23 Aligned_cols=347 Identities=20% Similarity=0.245 Sum_probs=229.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--------cc-------cchhhhcccc---------ccc
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--------RI-------VDCVEEIDAQ---------QVL 106 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--------r~-------~~~l~~l~~~---------~~~ 106 (502)
..+.+||+||||||+|+++|+.|+++|++|+|+|+.+.... |. .++++.++.. ...
T Consensus 2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~ 81 (391)
T PRK08020 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYR 81 (391)
T ss_pred CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccc
Confidence 35569999999999999999999999999999999853210 11 1333333221 111
Q ss_pred eEEEEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEE
Q 010765 107 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELR 185 (502)
Q Consensus 107 g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~ 185 (502)
....+.... ..+.+.......+..++.++|..|++.|.+.+.+.+++++++++ ++++.++++. +.+..++|++
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~~-- 155 (391)
T PRK08020 82 RLETWEWET-AHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG---WELTLADGEE-- 155 (391)
T ss_pred eEEEEeCCC-CeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe---EEEEECCCCE--
Confidence 222221111 11222222222234567899999999999999888899999887 8898877664 4455566764
Q ss_pred EecCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC--
Q 010765 186 AYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK-- 262 (502)
Q Consensus 186 v~ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-- 262 (502)
++||+||+|||.+|.+|+.+++......+...++.+. ..+.+..+..+..+...++..++|..++...+.+..+...
T Consensus 156 ~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~ 235 (391)
T PRK08020 156 IQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIR 235 (391)
T ss_pred EEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHH
Confidence 5699999999999999999987654333222333222 2222333334445566677888999876555544332110
Q ss_pred -CCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHH
Q 010765 263 -VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALS 341 (502)
Q Consensus 263 -~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~ 341 (502)
....+.+++.+.+.+.+.+.+. . ........+|+....+.+|..+||+|+|||||.++|++|||+|+||+
T Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~~-~--------~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~ 306 (391)
T PRK08020 236 QLQAMSMAQLQQEIAAHFPARLG-A--------VTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYR 306 (391)
T ss_pred HHHCCCHHHHHHHHHHHhhhhcc-c--------eEeccccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHH
Confidence 0111222332333222111110 0 01112345676666788999999999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcC
Q 010765 342 DIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLG 413 (502)
Q Consensus 342 Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g 413 (502)
||.+|+++|.+....+.......+|++|+++|++....++..++.+.++|..+. +....+|+..+..+..-
T Consensus 307 Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~-~~~~~~R~~~l~~~~~~ 377 (391)
T PRK08020 307 DVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNL-PPLRFARNLGLMAAQRA 377 (391)
T ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHhcC
Confidence 999999999864322222235679999999999999998999999999998764 46788899887765443
No 27
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=5.6e-39 Score=328.65 Aligned_cols=341 Identities=21% Similarity=0.326 Sum_probs=233.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC-------ccc-------chhhhcc------c---cccceEEEEE
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-------RIV-------DCVEEID------A---QQVLGYALFK 112 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~-------r~~-------~~l~~l~------~---~~~~g~~~~~ 112 (502)
||+||||||+|+++|+.|+++|++|+|+||++.+.. +.. +.+++++ . ....++.++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999976422 211 3333332 2 1233344444
Q ss_pred CCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 113 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 113 ~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
.+....+.++.........++.++|..|.+.|.+.+.+.+++++++++ |+++.++++. +.+..++|+. +++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~~~~v 155 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDH---VELTLDDGQQ--LRARLL 155 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe---eEEEECCCCE--EEeeEE
Confidence 432222333222222234567899999999999999988669999997 9999877764 4455677865 569999
Q ss_pred EEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC---CCCCC
Q 010765 192 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VPSIS 267 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~~~ 267 (502)
|+|||.+|.+|+.++++.........++... ....+.......++.++++++++|++++..++.+..+... ....+
T Consensus 156 i~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 235 (385)
T TIGR01988 156 VGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALS 235 (385)
T ss_pred EEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 9999999999999986543322222222211 2222323333445567778899999998877777665321 11233
Q ss_pred chHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHH
Q 010765 268 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 347 (502)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La 347 (502)
.+++.+.+.+.+.+.++ .+ .....+..+++....+.+|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La 307 (385)
T TIGR01988 236 DEEFLAELQRAFGSRLG-AI-------TLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALA 307 (385)
T ss_pred HHHHHHHHHHHHhhhcC-ce-------EeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHH
Confidence 44444444443322111 00 11124455666666777899999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhh
Q 010765 348 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYL 410 (502)
Q Consensus 348 ~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~ 410 (502)
++|......+.....+.+++.|+++|++++..++..++.++++|..+ ++....+|+..++.+
T Consensus 308 ~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~ 369 (385)
T TIGR01988 308 EVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSND-FPPLRLLRNLGLRLL 369 (385)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHH
Confidence 99986421111112468999999999999999999999999998765 455677888776654
No 28
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=2e-39 Score=332.76 Aligned_cols=345 Identities=18% Similarity=0.233 Sum_probs=230.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC-------Cc-------ccchhhhccc------c---ccceEE
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-------DR-------IVDCVEEIDA------Q---QVLGYA 109 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~-------~r-------~~~~l~~l~~------~---~~~g~~ 109 (502)
+++||+||||||+|+++|+.|+++|++|+|+||.+.+. .+ ..++++.++. . ...+..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~ 81 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAK 81 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEE
Confidence 36899999999999999999999999999999986531 11 1134443322 1 122333
Q ss_pred EEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec
Q 010765 110 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA 188 (502)
Q Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a 188 (502)
++.......+.++.........++.++|..+.+.|.+.+.+.+|+++++++ ++++.++++. +.+..++|++ ++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~---~~v~~~~g~~--~~a 156 (392)
T PRK09126 82 VLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG---AQVTLANGRR--LTA 156 (392)
T ss_pred EEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe---EEEEEcCCCE--EEe
Confidence 332222222333322222234567889999999999998776789999998 9999877664 3345567764 569
Q ss_pred CEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCC---
Q 010765 189 PLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVP--- 264 (502)
Q Consensus 189 d~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--- 264 (502)
|+||+|||.+|.+|+.++++..........+... ....+.......+++.+.+++++|..++..++.+.++.+..+
T Consensus 157 ~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 236 (392)
T PRK09126 157 RLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALL 236 (392)
T ss_pred CEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence 9999999999999999986543222221112111 112223333455667777889999998877777766532111
Q ss_pred CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHH
Q 010765 265 SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344 (502)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~ 344 (502)
..+.+++.+.+.+.+.+.+. . ......+..++.....+++|..+||+|+|||||.++|++|||+|+||+||.
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~ 308 (392)
T PRK09126 237 ALDPEAFAAEVTARFKGRLG-A-------MRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQD 308 (392)
T ss_pred cCCHHHHHHHHHHHHhhhcc-C-------eEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHH
Confidence 11222222222221111100 0 001123344555555677889999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhh
Q 010765 345 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS 411 (502)
Q Consensus 345 ~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 411 (502)
.|+++|..+.....+...+++|+.|+++|++++..++..++.+.+++..+ +.....+|+.++..+.
T Consensus 309 ~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 374 (392)
T PRK09126 309 ILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDD-RPPARLLRRAVLRAAN 374 (392)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHh
Confidence 99999976532111223468999999999999999999999999998765 4567788998877654
No 29
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=3.8e-39 Score=329.61 Aligned_cols=339 Identities=20% Similarity=0.287 Sum_probs=228.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCC-CeEEEEecCCCCCCc------c-------cchhhhcccc--------ccceEEEEEC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDR------I-------VDCVEEIDAQ--------QVLGYALFKD 113 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G-~~v~lvEr~~~~~~r------~-------~~~l~~l~~~--------~~~g~~~~~~ 113 (502)
||+||||||+|+++|+.|+++| ++|+|+||.+.+... . .++++.++.. ...++.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999998654322 1 1344443321 1222333322
Q ss_pred CceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEE
Q 010765 114 GKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 192 (502)
Q Consensus 114 g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI 192 (502)
+......+..........++.++|..|++.|.+.+.+.+|+++++++ ++++.++++. +++..++|+. ++||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~vV 155 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY---VRVTLDNGQQ--LRAKLLI 155 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe---EEEEECCCCE--EEeeEEE
Confidence 21112222222222334467899999999999999886689999887 9999877764 4455566764 5699999
Q ss_pred EecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCC-eEEEEEEeCCCC---CCCCC
Q 010765 193 VCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISST-EVRCLVDVPGQK---VPSIS 267 (502)
Q Consensus 193 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~---~~~~~ 267 (502)
+|||.+|.+|+.++++.....+....+... ....+.......++...+++.++|.+++ ..++.+..+.+. ....+
T Consensus 156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (382)
T TIGR01984 156 AADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLP 235 (382)
T ss_pred EecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCC
Confidence 999999999999987654433322232221 1222333333344566678889999887 556655554221 11222
Q ss_pred chHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHH
Q 010765 268 NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 347 (502)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La 347 (502)
.++..+.+.+.+.+.+ . .......+..+++.....++|..+||+|+|||||.++|++|||+|+||+||.+|+
T Consensus 236 ~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La 307 (382)
T TIGR01984 236 DAEFLAELQQAFGWRL----G----KITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLA 307 (382)
T ss_pred HHHHHHHHHHHHhhhc----c----CeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHH
Confidence 2333333333221111 0 0111224455666666788899999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhh
Q 010765 348 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS 411 (502)
Q Consensus 348 ~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 411 (502)
++|.... .....+++|+.|+++|++.+..++.++..+.++|..+ .+....+|+..++.+.
T Consensus 308 ~~L~~~~---~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 367 (382)
T TIGR01984 308 EVLIDAR---IDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNH-IPLLRALRNLGLLALE 367 (382)
T ss_pred HHHHHhc---cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 9997642 1223467999999999999999999999999999765 4456778888776654
No 30
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=9.4e-39 Score=329.05 Aligned_cols=345 Identities=19% Similarity=0.253 Sum_probs=229.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCCCC----Cccc-------chhhhccc------c--ccceEEEEEC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEP----DRIV-------DCVEEIDA------Q--QVLGYALFKD 113 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~~~----~r~~-------~~l~~l~~------~--~~~g~~~~~~ 113 (502)
+||+||||||+||++|+.|+++| ++|+|+||.+... .+.. ++++.++. . +...+.++..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999996 9999999986532 1211 34444332 1 1223333322
Q ss_pred -Cce----eeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEe
Q 010765 114 -GKS----TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAY 187 (502)
Q Consensus 114 -g~~----~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ 187 (502)
+.. ....+........+.++.++|..|++.|.+.+.+. |+++++++ |+++.++++. +.+..++|+. ++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---v~v~~~~g~~--~~ 155 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETRDEG---VTVTLSDGSV--LE 155 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCE---EEEEECCCCE--EE
Confidence 110 01121111112233456889999999999999887 89999887 9999877764 3455567764 56
Q ss_pred cCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCC--
Q 010765 188 APLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVP-- 264 (502)
Q Consensus 188 ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-- 264 (502)
||+||+|||.+|.+|+.+++......+...++... ..+.+..+....++.++++++++|.+++..++.+..+.+...
T Consensus 156 ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~ 235 (403)
T PRK07333 156 ARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERL 235 (403)
T ss_pred eCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHH
Confidence 99999999999999999987654433333443332 222233334455666778889999998877766544321100
Q ss_pred -CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHH
Q 010765 265 -SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 343 (502)
Q Consensus 265 -~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da 343 (502)
........+.+.+.+...+. .+. .......++.....+.+|..|||+|+|||||.++|++|||+|+||+||
T Consensus 236 ~~~~~~~~~~~l~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da 307 (403)
T PRK07333 236 VALDDLVFEAELEQRFGHRLG-ELK-------VLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDV 307 (403)
T ss_pred HCCCHHHHHHHHHHHhhhhcC-ceE-------eccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHH
Confidence 11111222222222211110 000 011223455555677889999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhcCC
Q 010765 344 VVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSLGG 414 (502)
Q Consensus 344 ~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~g~ 414 (502)
.+|+++|......+.....+.+|++|+++|++++..++..++.+.++|..+ ++....+|+..+..+..-+
T Consensus 308 ~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~ 377 (403)
T PRK07333 308 AALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND-STLLRSVRDIGLGLVDRLP 377 (403)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCH
Confidence 999999986532111223578999999999999999999999999988765 4567788888776654433
No 31
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=6e-38 Score=321.43 Aligned_cols=340 Identities=21% Similarity=0.249 Sum_probs=218.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC--C--c-------ccchhhhcccc--------ccceEEEEECC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP--D--R-------IVDCVEEIDAQ--------QVLGYALFKDG 114 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~--~--r-------~~~~l~~l~~~--------~~~g~~~~~~g 114 (502)
++||+||||||+||++|+.|+++|++|+|+||++.+. . + ..++++.++.. ...++.++.++
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 5799999999999999999999999999999997521 1 1 11444444321 23445555555
Q ss_pred ceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEeCCCcEEEEecCEEE
Q 010765 115 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLE-ENGTIKGVQYKTKDGQELRAYAPLTI 192 (502)
Q Consensus 115 ~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~-~~~~v~~v~~~~~~G~~~~v~ad~vI 192 (502)
+...+.++ ..........++|..+.+.|.+.+.+. |+++++++ ++++.+ +++. ..|++. .+|++.+++||+||
T Consensus 82 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~Ll~~a~~~-gv~v~~~~~v~~i~~~~~~~-~~V~~~-~~G~~~~i~ad~vV 156 (392)
T PRK08243 82 RRHRIDLT--ELTGGRAVTVYGQTEVTRDLMAARLAA-GGPIRFEASDVALHDFDSDR-PYVTYE-KDGEEHRLDCDFIA 156 (392)
T ss_pred EEEEeccc--cccCCceEEEeCcHHHHHHHHHHHHhC-CCeEEEeeeEEEEEecCCCc-eEEEEE-cCCeEEEEEeCEEE
Confidence 43333332 111122234567889999998888776 79999998 888876 3333 235442 46776678899999
Q ss_pred EecCCCchhhhhhcCCCCC-C----ccceeEEEEeecCCCCCCceEEEEcCC-CcEEEEecCCCeEEEEEEeCC-CCCCC
Q 010765 193 VCDGCFSNLRRSLCKPKVD-V----PSCFVGLVLENCQLPFANHGHVILADP-SPILFYPISSTEVRCLVDVPG-QKVPS 265 (502)
Q Consensus 193 ~ADG~~S~vR~~l~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~-~~~~~ 265 (502)
+|||.+|.+|++++..... + +..+.++. .+.+.......+...+ +..++++.+++..++++.++. +....
T Consensus 157 gADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (392)
T PRK08243 157 GCDGFHGVSRASIPAGALRTFERVYPFGWLGIL---AEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVED 233 (392)
T ss_pred ECCCCCCchhhhcCcchhhceecccCceEEEEe---CCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCccc
Confidence 9999999999999764311 1 11112221 1222221122233333 344444555555566665542 22334
Q ss_pred CCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHH
Q 010765 266 ISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 345 (502)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~ 345 (502)
+..++..+.+++.+.+.....+.. .+......++.....+++|+.|||+|+|||||.++|++|||+|+||+||.+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~ 308 (392)
T PRK08243 234 WSDERFWDELRRRLPPEDAERLVT-----GPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRY 308 (392)
T ss_pred CChhHHHHHHHHhcCccccccccc-----CccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHH
Confidence 444555555555443211111100 000011233455566788999999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccC--ChhHHHHHHHHHhhhh
Q 010765 346 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS--PDQARKEMRQACFDYL 410 (502)
Q Consensus 346 La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~--~~~~~~~lr~~~~~~~ 410 (502)
|+|+|...... ..+++|++|+++|+|++..++..+..+.+++... +......+|+.+++.+
T Consensus 309 La~~L~~~~~~----~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (392)
T PRK08243 309 LARALVEFYRE----GDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYL 371 (392)
T ss_pred HHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 99999865321 2468999999999999999999998888876653 2334566777766544
No 32
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=314.34 Aligned_cols=333 Identities=18% Similarity=0.236 Sum_probs=220.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc---------cchhhhccc------c--ccceEEEEECCceee
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI---------VDCVEEIDA------Q--QVLGYALFKDGKSTR 118 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~---------~~~l~~l~~------~--~~~g~~~~~~g~~~~ 118 (502)
+|+||||||+||++|+.|+++|++|+|+||++...... .+.++.++. . ...++.++.......
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 79999999999999999999999999999997643211 133333321 1 223344443321111
Q ss_pred eeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 119 LSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 119 ~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
...+. .....++.++|..|.+.|.+.+. ..++++++ ++++.++++. +++.+++|++ +++|+||+|||.
T Consensus 82 ~~~~~---~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~~~~vigadG~ 150 (373)
T PRK06753 82 NKVKL---KSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDK---VTIHFADGES--EAFDLCIGADGI 150 (373)
T ss_pred eeccc---ccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCc---EEEEECCCCE--EecCEEEECCCc
Confidence 11111 12234578999999999998864 35788887 9999877664 4556677865 459999999999
Q ss_pred CchhhhhhcCCCCCCccceeEEE--EeecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCC-CCCCchHHHHH
Q 010765 198 FSNLRRSLCKPKVDVPSCFVGLV--LENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKV-PSISNGEMANY 274 (502)
Q Consensus 198 ~S~vR~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 274 (502)
+|.+|+.++.........+..+. .....++.......++...++++++|..++...|.+.++.+.. +... ....+.
T Consensus 151 ~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 229 (373)
T PRK06753 151 HSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYS-SFGKPH 229 (373)
T ss_pred chHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccc-cccHHH
Confidence 99999999764322111122221 1112222333344556677788999999887777776542211 1111 111223
Q ss_pred HHHHcCCCCChhhHHHHHHHHhcCCeeeccCC-CCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCcc
Q 010765 275 LKAMVAPQVPPELHEAFVSAVERGNIRTMPNR-SMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPL 353 (502)
Q Consensus 275 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~ 353 (502)
+.+.+. .+++.+.+.+.. .+...+..++.. ..+..+|..+||+|+|||||.++|+.|||+|+||+||..|++.|..
T Consensus 230 l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~- 306 (373)
T PRK06753 230 LQAYFN-HYPNEVREILDK-QSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA- 306 (373)
T ss_pred HHHHHh-cCChHHHHHHHh-CCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh-
Confidence 333332 345555443322 222222223322 2345678899999999999999999999999999999999999953
Q ss_pred CCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhh
Q 010765 354 HDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYL 410 (502)
Q Consensus 354 ~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~ 410 (502)
...+++++.|+++|++++..++..+..+.+++..+ .+....+|+.+++.+
T Consensus 307 ------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~ 356 (373)
T PRK06753 307 ------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-SKLLVALRNRVMKRM 356 (373)
T ss_pred ------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-CchHHHHHHHHHHhC
Confidence 24578999999999999999999999998888765 445677888876554
No 33
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=317.25 Aligned_cols=341 Identities=17% Similarity=0.202 Sum_probs=222.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--c-------ccchhhhccc------c--ccceEEEEECCcee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--R-------IVDCVEEIDA------Q--QVLGYALFKDGKST 117 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--r-------~~~~l~~l~~------~--~~~g~~~~~~g~~~ 117 (502)
.||+||||||+||++|+.|+++|++|+|+||++.... + ..+++++++. . ....+.++......
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 3899999999999999999999999999999865432 1 1233443332 1 12333344322211
Q ss_pred eeeccCcCCCC--CCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEe
Q 010765 118 RLSYPLEKFHA--DVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 194 (502)
Q Consensus 118 ~~~~~~~~~~~--~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~A 194 (502)
...++...... ....+.++|..|.+.|.+.+.. ++++++++ |+++++++++ |++..++|+.. ++|+||+|
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~--~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~~--~~d~vIgA 153 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG--QVETIFDDSIATIDEHRDG---VRVTFERGTPR--DFDLVIGA 153 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc--CeEEEeCCEEeEEEECCCe---EEEEECCCCEE--EeCEEEEC
Confidence 12222111111 1112579999999999886643 69999998 9999887774 45666788754 59999999
Q ss_pred cCCCchhhhhhcCCCCCCccceeEEEEeec----CCCCCCc-eEEEEcCCCcEEEEecCCCeEEEEEEeCC-CCCCCCCc
Q 010765 195 DGCFSNLRRSLCKPKVDVPSCFVGLVLENC----QLPFANH-GHVILADPSPILFYPISSTEVRCLVDVPG-QKVPSISN 268 (502)
Q Consensus 195 DG~~S~vR~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~ 268 (502)
||.+|.+|+.+....... ..+.+..+... ..+.... ...+.+++.++.++|+.++...+.+..+. ...+..+.
T Consensus 154 DG~~S~vR~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 232 (391)
T PRK07588 154 DGLHSHVRRLVFGPERDF-EHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTP 232 (391)
T ss_pred CCCCccchhhccCCccce-EEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCH
Confidence 999999999864322211 12222222111 1222222 22344455688899998886555554432 22233455
Q ss_pred hHHHHHHHHHcCCCCChhhHHHHHHHHh-cCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHH
Q 010765 269 GEMANYLKAMVAPQVPPELHEAFVSAVE-RGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLR 347 (502)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La 347 (502)
++..+.+++.+.. ++......+ .... ...+...+.......+|..|||+|+|||||.++|+.|||+|+||+||..|+
T Consensus 233 ~~~~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La 310 (391)
T PRK07588 233 AEEKQLLRDQFGD-VGWETPDIL-AALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLA 310 (391)
T ss_pred HHHHHHHHHHhcc-CCccHHHHH-HhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHH
Confidence 5666667665542 222222211 1111 111211222334567889999999999999999999999999999999999
Q ss_pred HhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhh
Q 010765 348 NLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS 411 (502)
Q Consensus 348 ~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 411 (502)
++|.... ...+.+|+.|+++|+|++..++..++.+.++|..+ ++....+|+..+..+.
T Consensus 311 ~~L~~~~-----~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 311 GELARAG-----GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPK-TRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CHHHHHHHHHHHHHhc
Confidence 9997532 23578999999999999999999999998888765 5566778998876654
No 34
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.1e-37 Score=320.20 Aligned_cols=346 Identities=21% Similarity=0.249 Sum_probs=224.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhC---CCeEEEEecCCCC----C---Ccc-------cchhhhcc------cc--ccce
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKD---GRRVHVIERDVTE----P---DRI-------VDCVEEID------AQ--QVLG 107 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~---G~~v~lvEr~~~~----~---~r~-------~~~l~~l~------~~--~~~g 107 (502)
..+||+||||||+|+++|+.|+++ |++|+|+||.... + .+. .++++.++ .. ....
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 468999999999999999999998 9999999995211 0 011 13333322 11 1122
Q ss_pred EEEEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 010765 108 YALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 186 (502)
Q Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v 186 (502)
+.+...+......+.......+..++.++|..|.+.|.+.+.+.+++++++++ ++++.++++. +.+..++|.. +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~---~~v~~~~g~~--~ 156 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS---VRVTLDDGET--L 156 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe---EEEEECCCCE--E
Confidence 22222222111111111122223457789999999999999887789999887 9998876664 4455666754 5
Q ss_pred ecCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC---
Q 010765 187 YAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK--- 262 (502)
Q Consensus 187 ~ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--- 262 (502)
++|+||+|||.+|.+|+.+++...........+... ....+........+.+.++++++|.+++...+++.++.+.
T Consensus 157 ~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~ 236 (395)
T PRK05732 157 TGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEE 236 (395)
T ss_pred EeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHHH
Confidence 699999999999999999987654333222222221 1111112222233456678889999998776666655321
Q ss_pred CCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHH
Q 010765 263 VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 342 (502)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~D 342 (502)
....+.++..+.+.+.+.. .+ ....+......+++....+.+|..+||+|+|||||.++|++|||+|+||+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~D 308 (395)
T PRK05732 237 VLSWSDAQFLAELQQAFGW----RL----GRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRD 308 (395)
T ss_pred HHcCCHHHHHHHHHHHHHh----hh----cceeecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHHH
Confidence 1122233333333332110 00 001111233445666566778999999999999999999999999999999
Q ss_pred HHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhhc
Q 010765 343 IVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLSL 412 (502)
Q Consensus 343 a~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~~ 412 (502)
|.+|+++|..+.........+++++.|+++|++++..++..++.+.++|..+ ......+|+..+..+..
T Consensus 309 a~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~ 377 (395)
T PRK05732 309 VMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-WAPLVVGRNLGLMAMDL 377 (395)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcc
Confidence 9999999965421111112347899999999999999999999999999765 34567788888766543
No 35
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=311.38 Aligned_cols=343 Identities=19% Similarity=0.231 Sum_probs=221.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc---------cchhhhcccc--------ccceEEEEECCce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI---------VDCVEEIDAQ--------QVLGYALFKDGKS 116 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~---------~~~l~~l~~~--------~~~g~~~~~~g~~ 116 (502)
..||+||||||+||++|+.|++.|++|+|+||++...... .+.++.++.. ....+.++.....
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 4699999999999999999999999999999986543211 1333333211 1223333322211
Q ss_pred eeeeccCcCCC--CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEE
Q 010765 117 TRLSYPLEKFH--ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 193 (502)
Q Consensus 117 ~~~~~~~~~~~--~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ 193 (502)
....++..... ..+....++|..|.+.|.+.+.+. ++++++++ ++++..+++. +.+...+|++ +.+|+||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~vI~ 157 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAA-GADVRLGTTVTAIEQDDDG---VTVTFSDGTT--GRYDLVVG 157 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHh-CCEEEeCCEEEEEEEcCCE---EEEEEcCCCE--EEcCEEEE
Confidence 11122211111 112345788999999999999877 79999997 8898876664 4455667765 55999999
Q ss_pred ecCCCchhhhhhcCC-CCCCccceeEEEEeecCCC-CCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHH
Q 010765 194 CDGCFSNLRRSLCKP-KVDVPSCFVGLVLENCQLP-FANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEM 271 (502)
Q Consensus 194 ADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (502)
|||.+|.+|+.+... ..........+... ...+ .......+.++++.+.++|.+++...+++..+.......+.++.
T Consensus 158 AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (375)
T PRK06847 158 ADGLYSKVRSLVFPDEPEPEYTGQGVWRAV-LPRPAEVDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPDTL 236 (375)
T ss_pred CcCCCcchhhHhcCCCCCceeccceEEEEE-ecCCCCccceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChHHH
Confidence 999999999988322 11111111111111 1111 12223566677778889999887665555444332233344455
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHh-cCCeeeccCCCC-CCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHh
Q 010765 272 ANYLKAMVAPQVPPELHEAFVSAVE-RGNIRTMPNRSM-PADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNL 349 (502)
Q Consensus 272 ~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~ 349 (502)
.+.+++.+.. +++.....+...+. ...+..++.... ...+|..|||+|+|||||.++|++|||+|+||+||.+|+++
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~ 315 (375)
T PRK06847 237 AALLRELLAP-FGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEE 315 (375)
T ss_pred HHHHHHHHhh-cCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHH
Confidence 5555554432 22212222222222 223334444432 34678999999999999999999999999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCCh--hHHHHHHHHHhhhh
Q 010765 350 LKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPD--QARKEMRQACFDYL 410 (502)
Q Consensus 350 L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~--~~~~~lr~~~~~~~ 410 (502)
|... ...+++|+.|+++|+|++..++..++.+.+.+..... .....+|+.++.++
T Consensus 316 L~~~------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T PRK06847 316 LARH------DSLEAALQAYYARRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLA 372 (375)
T ss_pred HhhC------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhc
Confidence 9742 3467899999999999999999999988887654322 13456777776554
No 36
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=6.7e-37 Score=313.69 Aligned_cols=343 Identities=20% Similarity=0.262 Sum_probs=228.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC-------c-------ccchhhhcccc---------ccceEE
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-------R-------IVDCVEEIDAQ---------QVLGYA 109 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~-------r-------~~~~l~~l~~~---------~~~g~~ 109 (502)
+++||+||||||+|+++|+.|++.|++|+|+||++.+.. + .+++++.++.. +...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 468999999999999999999999999999999966432 1 11344443221 112233
Q ss_pred EEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 010765 110 LFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAP 189 (502)
Q Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad 189 (502)
++... ...+.+.......+...+.++|..+++.|.+.+++.++++++..+++++.++++. +.+...+|.+ ++||
T Consensus 84 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~---~~v~~~~g~~--~~a~ 157 (388)
T PRK07608 84 VFGDA-HARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDA---ATLTLADGQV--LRAD 157 (388)
T ss_pred EEECC-CceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCe---EEEEECCCCE--EEee
Confidence 33221 1122221111122233567899999999999999886699884448998877664 3455666753 5699
Q ss_pred EEEEecCCCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCC---CCC
Q 010765 190 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQK---VPS 265 (502)
Q Consensus 190 ~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---~~~ 265 (502)
+||+|||.+|.+|+.++...........++... ..+.+..+....++.++++++++|++++...+.+..+... ...
T Consensus 158 ~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T PRK07608 158 LVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLA 237 (388)
T ss_pred EEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHC
Confidence 999999999999999987654333323333322 2222333334556678888999999988766555443211 111
Q ss_pred CCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHH
Q 010765 266 ISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVV 345 (502)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~ 345 (502)
.+++++.+.+.+...+.+ .++ ........++......+.|..+||+|+|||||.++|++|||+|+||+||.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~ 309 (388)
T PRK07608 238 LSPEALAARVERASGGRL-GRL-------ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAA 309 (388)
T ss_pred CCHHHHHHHHHHHHHHhc-CCc-------eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHH
Confidence 223344444443321100 000 001122335555566778999999999999999999999999999999999
Q ss_pred HHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhhhhh
Q 010765 346 LRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFDYLS 411 (502)
Q Consensus 346 La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~~~~ 411 (502)
|+++|...... .+....++|++|+++|+++...++..+..+.++|..+ +.....+|+..+..+.
T Consensus 310 La~~L~~~~~~-~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~ 373 (388)
T PRK07608 310 LADVLAGREPF-RDLGDLRLLRRYERARREDILALQVATDGLQRLFALP-GPLARWLRNAGMALVG 373 (388)
T ss_pred HHHHHHHhhcc-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHh
Confidence 99999754211 1122347999999999999999999999999999865 4456778888876543
No 37
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=7.6e-38 Score=316.09 Aligned_cols=320 Identities=22% Similarity=0.286 Sum_probs=198.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc---------chhhhccc------cc----cceEEEEEC-
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV---------DCVEEIDA------QQ----VLGYALFKD- 113 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~---------~~l~~l~~------~~----~~g~~~~~~- 113 (502)
++||+||||||+||++|+.|+++|++|+||||++....... +.++.++. .. .....++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 37999999999999999999999999999999976543221 33433321 11 111122221
Q ss_pred -Ccee-----eeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEE
Q 010765 114 -GKST-----RLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRA 186 (502)
Q Consensus 114 -g~~~-----~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v 186 (502)
+... ............+....++|..|++.|++.+++. ++++++++ ++++.++++++..+.....+|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i 159 (356)
T PF01494_consen 81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEER-GVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETI 159 (356)
T ss_dssp TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHH-TEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEE
T ss_pred CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhh-hhhheeeeecccccccccccccccccccCCceeEE
Confidence 1110 0001111112333456889999999999999998 59999998 99999988876533333346777788
Q ss_pred ecCEEEEecCCCchhhhhhcCCCCCCcc----ceeEEEEeecCCCCCCceEEEEc--CCCcEEEEecCC-CeEEEEEEeC
Q 010765 187 YAPLTIVCDGCFSNLRRSLCKPKVDVPS----CFVGLVLENCQLPFANHGHVILA--DPSPILFYPISS-TEVRCLVDVP 259 (502)
Q Consensus 187 ~ad~vI~ADG~~S~vR~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~-~~~~~~~~~~ 259 (502)
+||+||+|||++|.+|+.+++..+.... .+..+... ..++......+++. +.+.++++|..+ +...+.+..+
T Consensus 160 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 238 (356)
T PF01494_consen 160 EADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFD-SDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLP 238 (356)
T ss_dssp EESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEE-CHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEeeeecccCcccchhhhccccccCccccccccccccccc-cccccccccccccccccccceeEeeccCCccceEEEeee
Confidence 9999999999999999999875322221 12222222 23332111133333 333457899988 4344444443
Q ss_pred CCC-CCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhH
Q 010765 260 GQK-VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTV 338 (502)
Q Consensus 260 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~ 338 (502)
... ..........+.+.+.+.+ .+..... ..+..+...+++......+|.+|||+|+|||||.++|++|||+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~ 313 (356)
T PF01494_consen 239 FDESKEERPEEFSPEELFANLPE----IFGPDLL-ETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINM 313 (356)
T ss_dssp TTTTTCCSTHCHHHHHHHHHHHH----HHHTCHH-HHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHH
T ss_pred ccccccccccccccccccccccc----ccccccc-ccccccccccccccccccccccceeEEeccceeeecccccCCCCc
Confidence 221 1111222222222221111 1110000 112234556666667788899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHH
Q 010765 339 ALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTL 383 (502)
Q Consensus 339 al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~ 383 (502)
||+||..|+++|..+. .+...+++|+.|+++|++++..+++.
T Consensus 314 Ai~da~~La~~L~~~~---~g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 314 AIEDAAALAELLAAAL---KGEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHH---TTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999998764 33445789999999999999887754
No 38
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=2.8e-36 Score=308.34 Aligned_cols=340 Identities=21% Similarity=0.250 Sum_probs=210.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC--C--cc-------cchhhhcccc--------ccceEEEEECC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP--D--RI-------VDCVEEIDAQ--------QVLGYALFKDG 114 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~--~--r~-------~~~l~~l~~~--------~~~g~~~~~~g 114 (502)
.+||+||||||+|+++|+.|+++|++|+|+||.+... . +. .++++.++.. ...++.++.++
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 4799999999999999999999999999999997421 1 11 1444444321 12233444444
Q ss_pred ceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEE
Q 010765 115 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 193 (502)
Q Consensus 115 ~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ 193 (502)
....+.++.. ..........+..+...|.+.+.+. ++.+++++ ++.+.+.++....|++. .+|+..+++||+|||
T Consensus 82 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~~~~V~~~-~~g~~~~i~adlvIG 157 (390)
T TIGR02360 82 QRFRIDLKAL--TGGKTVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGDRPYVTFE-RDGERHRLDCDFIAG 157 (390)
T ss_pred EEEEEecccc--CCCceEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCCccEEEEE-ECCeEEEEEeCEEEE
Confidence 3333333211 1111112345778899999988877 67787776 77776533322245543 367655678999999
Q ss_pred ecCCCchhhhhhcCCCCCC-c----cceeEEEEeecCCCCCCceEEEEcCCCcEEEEecCC-CeEEEEEEeCCC-CCCCC
Q 010765 194 CDGCFSNLRRSLCKPKVDV-P----SCFVGLVLENCQLPFANHGHVILADPSPILFYPISS-TEVRCLVDVPGQ-KVPSI 266 (502)
Q Consensus 194 ADG~~S~vR~~l~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~-~~~~~ 266 (502)
|||.+|.||++++...... . ..+.++.. ..+.......+.+.+..+.++|+.+ +..+|.+.++.. ....+
T Consensus 158 ADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (390)
T TIGR02360 158 CDGFHGVSRASIPAEVLKEFERVYPFGWLGILS---ETPPVSHELIYSNHERGFALCSMRSATRSRYYVQVPLTDKVEDW 234 (390)
T ss_pred CCCCchhhHHhcCcccceeeeccCCcceEEEec---CCCCCCCceEEEeCCCceEEEeccCCCcceEEEEcCCCCChhhC
Confidence 9999999999986533211 1 11122221 1122222234445556666777754 333455555432 23334
Q ss_pred CchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHH
Q 010765 267 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVL 346 (502)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~L 346 (502)
..+...+.+++.+. +.+.+.+.. .+.......+......++|..|||+|+|||||.++|+.|||+|+||+||.+|
T Consensus 235 ~~~~~~~~l~~~~~----~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~L 309 (390)
T TIGR02360 235 SDDRFWAELKRRLP----SEAAERLVT-GPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYL 309 (390)
T ss_pred ChhHHHHHHHHhcC----chhhhhhcc-CCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHH
Confidence 44444455544332 222222111 1111122334555667889999999999999999999999999999999999
Q ss_pred HHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCC--hhHHHHHHHHHhhh
Q 010765 347 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSP--DQARKEMRQACFDY 409 (502)
Q Consensus 347 a~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~--~~~~~~lr~~~~~~ 409 (502)
+++|..... ...+.+|+.|+++|++++..++..|+.+.+++..-+ +.....++.+++++
T Consensus 310 a~~L~~~~~----~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (390)
T TIGR02360 310 YEALLEHYQ----EGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEY 370 (390)
T ss_pred HHHHHHHhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 999975321 235679999999999999999999998877765432 23334445555443
No 39
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.3e-36 Score=309.39 Aligned_cols=338 Identities=19% Similarity=0.236 Sum_probs=215.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC---------cccchhhhccc------cccc-eEEEEECCceee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD---------RIVDCVEEIDA------QQVL-GYALFKDGKSTR 118 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~---------r~~~~l~~l~~------~~~~-g~~~~~~g~~~~ 118 (502)
-+|+||||||+||++|+.|+++|++|+|+||.+.... +..++++.++. .... ....+.++....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 5899999999999999999999999999999865422 11134443332 1111 111122222211
Q ss_pred --eeccCcCCC---CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEE
Q 010765 119 --LSYPLEKFH---ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 192 (502)
Q Consensus 119 --~~~~~~~~~---~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI 192 (502)
......... .......++|..|.+.|.+.+.+.+++++++++ ++++.++++++. +++...++. .+++||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~-~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSV-ETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCC-cEEecCEEE
Confidence 111111100 111224689999999999999877789999998 999988766542 444333333 235699999
Q ss_pred EecCCCchhhhhhcCCCCCCccceeEEE--EeecCCC--------CCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCC-
Q 010765 193 VCDGCFSNLRRSLCKPKVDVPSCFVGLV--LENCQLP--------FANHGHVILADPSPILFYPISSTEVRCLVDVPGQ- 261 (502)
Q Consensus 193 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~- 261 (502)
||||.+|.||+.++.....+. .+..+. +....++ +.+....|+++++.+..||+++++..+++.+...
T Consensus 161 gADG~~S~vR~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~ 239 (400)
T PRK06475 161 ACDGVWSMLRAKAGFSKARFS-GHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGE 239 (400)
T ss_pred ECCCccHhHHhhcCCCCCCcC-CceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCC
Confidence 999999999999865332221 122211 1111111 2223456678888999999998765555443211
Q ss_pred -CCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCC-CCCCEEEEeCCCCCCCCCCchhHhHH
Q 010765 262 -KVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQ-PTPGALLMGDAFNMRHPLTGGGMTVA 339 (502)
Q Consensus 262 -~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rv~LvGDAAh~~~P~~G~G~n~a 339 (502)
....+.....++.+++.+ ..+++.+...+.. . ..+..+++......+| ..|||+|+|||||+++|+.|||+|+|
T Consensus 240 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~i~~-~--~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~a 315 (400)
T PRK06475 240 NPGEVWSKTGDKAHLKSIY-ADWNKPVLQILAA-I--DEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMA 315 (400)
T ss_pred CCcccCCCCCCHHHHHHHh-cCCChHHHHHHhc-C--CceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHH
Confidence 111222222233444433 3566666554422 2 2345677766666665 46999999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHhh
Q 010765 340 LSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACFD 408 (502)
Q Consensus 340 l~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~~ 408 (502)
|+||..|+++|... ....+|+.|+++|+|++..++..++.....+. ..+ .....|+..+.
T Consensus 316 ieDa~~La~~L~~~-------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~-~~~-~~~~~r~~~~~ 375 (400)
T PRK06475 316 IEDAAALAEALDSD-------DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYH-ATG-IFALGRNMLFA 375 (400)
T ss_pred HHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHh
Confidence 99999999999631 25689999999999999999988864433333 223 34556776543
No 40
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=3.7e-35 Score=298.03 Aligned_cols=335 Identities=17% Similarity=0.142 Sum_probs=209.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--c-------ccchhhhcccc--------ccceEEEEEC-Cce
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--R-------IVDCVEEIDAQ--------QVLGYALFKD-GKS 116 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--r-------~~~~l~~l~~~--------~~~g~~~~~~-g~~ 116 (502)
.||+||||||+||++|+.|+++|++|+|+||++.... . ..++++.++.. ...+..++.. |..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 3899999999999999999999999999999966432 1 11444444321 2233344432 322
Q ss_pred eeeeccCcCCC--CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEE
Q 010765 117 TRLSYPLEKFH--ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 193 (502)
Q Consensus 117 ~~~~~~~~~~~--~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ 193 (502)
........... .....+.++|..|.+.|.+.+. +++++++++ ++++.++++ +|++..++|++ ++||+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~~~~---~v~v~~~dg~~--~~adlvIg 154 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQDDGD---SVRVTFERAAA--REFDLVIG 154 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEecCC---eEEEEECCCCe--EEeCEEEE
Confidence 11111101111 1112357889999998876542 379999998 999987666 35566778875 45999999
Q ss_pred ecCCCchhhhhhcCCCCCCc--cceeEEEEe-ecCCCCCCceEEEEcCCCcEEEEecCCCe-EEEEEEeCCCC--CCCCC
Q 010765 194 CDGCFSNLRRSLCKPKVDVP--SCFVGLVLE-NCQLPFANHGHVILADPSPILFYPISSTE-VRCLVDVPGQK--VPSIS 267 (502)
Q Consensus 194 ADG~~S~vR~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~--~~~~~ 267 (502)
|||.+|.+|+.+........ .......+. ....+......++++++....+||..++. ...++.+.... .+...
T Consensus 155 ADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PRK05868 155 ADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRD 234 (372)
T ss_pred CCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccCC
Confidence 99999999999854332211 111111211 11122222222235666677889988653 33334333211 11112
Q ss_pred chHHHHHHHHHcCC-CCC-hhhHHHHHHHHhcCCeeecc-CCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHH
Q 010765 268 NGEMANYLKAMVAP-QVP-PELHEAFVSAVERGNIRTMP-NRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIV 344 (502)
Q Consensus 268 ~~~~~~~l~~~~~~-~~~-~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~ 344 (502)
.+...+.+++.+.. .+. +++.+. +.......++ ....+.++|++|||+|+|||||+++|+.|||+|+||+||+
T Consensus 235 ~~~~~~~l~~~f~~~~w~~~~l~~~----~~~~~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~ 310 (372)
T PRK05868 235 TEAQFAELQRRMAEDGWVRAQLLHY----MRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAY 310 (372)
T ss_pred hHHHHHHHHHHHhhCCCchHHHHhh----cccCCceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHH
Confidence 23334455544431 232 333322 2211111222 3444567899999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHH
Q 010765 345 VLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQAC 406 (502)
Q Consensus 345 ~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~ 406 (502)
.|+++|.... .+++++|+.||+..||+..+.|.+.......|... ......+|+.+
T Consensus 311 ~La~~L~~~~-----~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~-~~~~~~~~~~~ 366 (372)
T PRK05868 311 ILAGELKAAG-----DDYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPI-PQEEFERIVHS 366 (372)
T ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCC-CHHHHHHhhcc
Confidence 9999997531 24788999999999999999998887777777654 33445555443
No 41
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=6.3e-35 Score=299.88 Aligned_cols=336 Identities=18% Similarity=0.254 Sum_probs=215.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc---------ccchhhhcccc--------ccceEEEEEC--
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR---------IVDCVEEIDAQ--------QVLGYALFKD-- 113 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r---------~~~~l~~l~~~--------~~~g~~~~~~-- 113 (502)
++.||+||||||+||++|+.|+++|++|+|+||++..... ..++++.++.. ....+.++..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 4579999999999999999999999999999999654321 11444444321 1122333321
Q ss_pred CceeeeeccCcC-C--CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC
Q 010765 114 GKSTRLSYPLEK-F--HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP 189 (502)
Q Consensus 114 g~~~~~~~~~~~-~--~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad 189 (502)
++. ....+... . ........++|..|.+.|.+.+.+.+++++++++ ++++.++++. +.+...+|++ +.||
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~v~~~~g~~--~~ad 156 (396)
T PRK08163 83 AEE-VVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG---VTVFDQQGNR--WTGD 156 (396)
T ss_pred CCE-EEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc---eEEEEcCCCE--EecC
Confidence 221 11111111 0 0111235789999999999999888779999997 9999876664 4455667764 5699
Q ss_pred EEEEecCCCchhhhhhcCCCCCCccceeEE--EEeecCCCC---CCceEEEEcCCCcEEEEecCCCeE-EEEEEeCCCCC
Q 010765 190 LTIVCDGCFSNLRRSLCKPKVDVPSCFVGL--VLENCQLPF---ANHGHVILADPSPILFYPISSTEV-RCLVDVPGQKV 263 (502)
Q Consensus 190 ~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~ 263 (502)
+||+|||.+|.+|+.+....... .....+ .+...+.+. ......+.++.+.++.+|+.++.. .+.+.++.+..
T Consensus 157 ~vV~AdG~~S~~r~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~ 235 (396)
T PRK08163 157 ALIGCDGVKSVVRQSLVGDAPRV-TGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQ 235 (396)
T ss_pred EEEECCCcChHHHhhccCCCCCc-cccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCC
Confidence 99999999999999884321111 111111 111111221 122345566667888999987653 34444432211
Q ss_pred CCC--CchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCC-CCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHH
Q 010765 264 PSI--SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNR-SMPADPQPTPGALLMGDAFNMRHPLTGGGMTVAL 340 (502)
Q Consensus 264 ~~~--~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al 340 (502)
..+ .... .+.+.+.+. .+.+.+.+.+... ..+..+... ..+..+|..|||+|+|||||.++|++|||+|+||
T Consensus 236 ~~~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 310 (396)
T PRK08163 236 EEWGVKDGS-KEEVLSYFE-GIHPRPRQMLDKP---TSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMAL 310 (396)
T ss_pred cccccCCCC-HHHHHHHHc-CCChHHHHHHhcC---CceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHH
Confidence 111 1112 223333333 3344444333211 122222222 2355688899999999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHHHh
Q 010765 341 SDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQACF 407 (502)
Q Consensus 341 ~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~~~ 407 (502)
+||.+|+++|... ....+.+|+.|+++|+|++..++..++.+.+++... .....+|+..+
T Consensus 311 ~Da~~La~~L~~~-----~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~--~~~~~~r~~~~ 370 (396)
T PRK08163 311 EDAVTLGKALEGC-----DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK--GVERQVRNLLW 370 (396)
T ss_pred HHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC--CHHHHHHHHHh
Confidence 9999999999742 234688999999999999999999999998888754 23556676554
No 42
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1e-34 Score=299.60 Aligned_cols=318 Identities=19% Similarity=0.206 Sum_probs=200.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc---------ccchhhhccc------c--ccceEEEEEC-Cce
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR---------IVDCVEEIDA------Q--QVLGYALFKD-GKS 116 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r---------~~~~l~~l~~------~--~~~g~~~~~~-g~~ 116 (502)
.||+||||||+||++|+.|+++|++|+|+||++...+. ..+.++.++. . ....+.++.. |+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 38999999999999999999999999999998654321 1133333322 1 1133334332 222
Q ss_pred eeeeccCcC-CCCCCcceeecchHHHHHHHHHHHc-CCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEE
Q 010765 117 TRLSYPLEK-FHADVSGRSFHNGRFIQRMREKAAS-LPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTI 192 (502)
Q Consensus 117 ~~~~~~~~~-~~~~~~g~~i~r~~l~~~L~~~a~~-~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI 192 (502)
....+... .......+.++|..|++.|.+.+.+ .+..++++++ ++++.++++++. +.+.+ .+|+..+++||+||
T Consensus 81 -~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 81 -IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred -EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEE
Confidence 11111110 1111223579999999999999866 4446799988 999987766532 33333 34555567899999
Q ss_pred EecCCCchhhhhhcCCCCCCccceeEEEEeec--CCCC--CCceEEEEc-CCCcEEEEecCCC-------eEEEEEEeCC
Q 010765 193 VCDGCFSNLRRSLCKPKVDVPSCFVGLVLENC--QLPF--ANHGHVILA-DPSPILFYPISST-------EVRCLVDVPG 260 (502)
Q Consensus 193 ~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~-~~~~~~~~p~~~~-------~~~~~~~~~~ 260 (502)
+|||.+|.+|+.++..... ..+.++..+.. ..+. ......+.+ +++.+.+||+.++ .+.|.+..+.
T Consensus 159 gADG~~S~vR~~l~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~ 236 (413)
T PRK07538 159 GADGIHSAVRAQLYPDEGP--PRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRV 236 (413)
T ss_pred ECCCCCHHHhhhhcCCCCC--CcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcC
Confidence 9999999999999754321 22333332211 1111 111223343 3567888998753 3556655542
Q ss_pred CC-----CCCCCchHHHHHHHHHcCCCCCh---hhHHHHHHHHhcCCeeeccCCCC-CCCCCCCCCEEEEeCCCCCCCCC
Q 010765 261 QK-----VPSISNGEMANYLKAMVAPQVPP---ELHEAFVSAVERGNIRTMPNRSM-PADPQPTPGALLMGDAFNMRHPL 331 (502)
Q Consensus 261 ~~-----~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~ 331 (502)
+. ...+......+.+.+.+. .+.. .+.+.+. ....+..+++... +.++|..|||+|+|||||.|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~---~~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~ 312 (413)
T PRK07538 237 DDAGAPRREDWNRPGDLEDFLPHFA-DWRFDWLDVPALIR---AAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPV 312 (413)
T ss_pred CccCCCcccccCCccCHHHHHHHhc-CCCCCcccHHHHHh---cCcceeeccccccCCCCcccCCcEEEEeeccCcCCCC
Confidence 21 112222222222222222 1211 1222221 1234555666543 46789999999999999999999
Q ss_pred CchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHH
Q 010765 332 TGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGA 386 (502)
Q Consensus 332 ~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~ 386 (502)
+|||+|+||+||..|+++|... ...+++|+.|+++|+|++..++..++.
T Consensus 313 ~GqG~~~Ai~Da~~La~~L~~~------~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 313 GSNGASQAILDARALADALAAH------GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred CcccHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 9999999999999999999863 126789999999999999998887765
No 43
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=8.9e-35 Score=297.48 Aligned_cols=319 Identities=19% Similarity=0.195 Sum_probs=198.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC-cc---------cchhhhcccccc-------ceEEEEECC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RI---------VDCVEEIDAQQV-------LGYALFKDG 114 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~-r~---------~~~l~~l~~~~~-------~g~~~~~~g 114 (502)
+...+|+||||||+||++|+.|+++|++|+|+||++.... +. .++++.++.... ....++...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 4468999999999999999999999999999999864321 11 144444432211 111111111
Q ss_pred ceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEE
Q 010765 115 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 193 (502)
Q Consensus 115 ~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ 193 (502)
.......+ .....+++..+.+.|.+.+ +++++++++ |++++++++. |++..++|++ ++||+||+
T Consensus 84 g~~~~~~~-------~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~---v~v~~~~g~~--~~ad~vIg 148 (386)
T PRK07236 84 GRVVQRRP-------MPQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDR---VTARFADGRR--ETADLLVG 148 (386)
T ss_pred CCEeeccC-------CCccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCe---EEEEECCCCE--EEeCEEEE
Confidence 11000000 0112346677888887654 567899998 9999887764 4456677875 56999999
Q ss_pred ecCCCchhhhhhcCCCCCCccceeEEE--EeecCCCCC------CceEEEEcCCCcEEEEecCCC---------eEEEEE
Q 010765 194 CDGCFSNLRRSLCKPKVDVPSCFVGLV--LENCQLPFA------NHGHVILADPSPILFYPISST---------EVRCLV 256 (502)
Q Consensus 194 ADG~~S~vR~~l~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~---------~~~~~~ 256 (502)
|||++|.+|+.+..........+..+. +....++.. .....+.+++..++.||+.+. ...|.+
T Consensus 149 ADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (386)
T PRK07236 149 ADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVW 228 (386)
T ss_pred CCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEE
Confidence 999999999998432221111111111 111122211 122344566667788887532 234555
Q ss_pred EeCCCCCC--------------------CCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCC
Q 010765 257 DVPGQKVP--------------------SISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTP 316 (502)
Q Consensus 257 ~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (502)
..+.+... ....++..+.+++.....+++.+.+.+... + ....+++......+|..|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~g 305 (386)
T PRK07236 229 YRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEAT-A--QPFVQAIFDLEVPRMAFG 305 (386)
T ss_pred EecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhC-c--CchhhhhhcccCcccccC
Confidence 44322100 001122333343332223555555443221 1 122234444556788999
Q ss_pred CEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhcc
Q 010765 317 GALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSS 393 (502)
Q Consensus 317 rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~ 393 (502)
||+|+|||||.++|+.|||+|+||+||..|+++|.... ...+.+++.|+++|+|++..++..++.+..++..
T Consensus 306 rv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-----~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~ 377 (386)
T PRK07236 306 RVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-----GDIDAALAAWEAERLAVGAAIVARGRRLGARLQA 377 (386)
T ss_pred cEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997542 2367899999999999999999999877766543
No 44
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=5.2e-34 Score=294.54 Aligned_cols=323 Identities=20% Similarity=0.218 Sum_probs=202.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCC-CeEEEEecCCCCCC---------cccchhhhccccc-c-----------ceEE-EEE
Q 010765 56 DVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPD---------RIVDCVEEIDAQQ-V-----------LGYA-LFK 112 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G-~~v~lvEr~~~~~~---------r~~~~l~~l~~~~-~-----------~g~~-~~~ 112 (502)
+|+||||||+||++|+.|+++| ++|+|+||++.... ....+++.++... . .... .+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 69999999866432 1113444433210 0 0111 111
Q ss_pred CCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 113 DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 113 ~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
++....... ...........++|..|.+.|.+.+. +..+++++ |+++.+++++ +++..++|++ +.+|+|
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~~~~~---~~v~~~~g~~--~~ad~v 151 (414)
T TIGR03219 82 NGSDASYLG--ATIAPGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEEQAEE---VQVLFTDGTE--YRCDLL 151 (414)
T ss_pred ecCccceee--eeccccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEecCCc---EEEEEcCCCE--EEeeEE
Confidence 111110000 00001111246899999999988763 35577887 9999887664 4566677775 459999
Q ss_pred EEecCCCchhhhhhcCC--CCCCccceeEEEEee-----cCC---------CC--CCceEEEEcCCCcEEEEecCCCeEE
Q 010765 192 IVCDGCFSNLRRSLCKP--KVDVPSCFVGLVLEN-----CQL---------PF--ANHGHVILADPSPILFYPISSTEVR 253 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~--~~~~~~~~~~~~~~~-----~~~---------~~--~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (502)
|+|||.+|.||+.+... .......+.++.... ..+ +. .+...+++++++.+++||+.+++..
T Consensus 152 VgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 231 (414)
T TIGR03219 152 IGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLI 231 (414)
T ss_pred EECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEE
Confidence 99999999999988521 111111122211111 011 00 1123466777888889999887644
Q ss_pred EEEEe-CCC--CC------CCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCC-CCCCCCCCCEEEEeC
Q 010765 254 CLVDV-PGQ--KV------PSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSM-PADPQPTPGALLMGD 323 (502)
Q Consensus 254 ~~~~~-~~~--~~------~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGD 323 (502)
+++.+ +.. .. ..+..+...+.+.+.+ ..+++.+.+.+.. .+.. ..+++... +..+|.+|||+|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~-~~~~--~~~~~~~~~~~~~w~~grv~LiGD 307 (414)
T TIGR03219 232 NVVAFISDRSQPKPTWPSDTPWVREATQREMLDAF-AGWGDAARALLEC-IPAP--TLWALHDLAELPGYVHGRVALIGD 307 (414)
T ss_pred EEEEEEcCcccccCCCCCCCcccCccCHHHHHHHh-cCCCHHHHHHHHh-CCCC--CceeeeecccccceeeCcEEEEEc
Confidence 33322 211 00 1111222233343333 3566666654432 2211 22333322 456788999999999
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccC
Q 010765 324 AFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSS 394 (502)
Q Consensus 324 AAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~ 394 (502)
|||.|+|+.|||+|+||+||..|+++|.... .++..++.+|+.|+++|+|++..++..++.+.+++...
T Consensus 308 AAH~m~P~~GqGa~~AieDA~~La~~L~~~~--~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 376 (414)
T TIGR03219 308 AAHAMLPHQGAGAGQGLEDAYFLARLLGDTE--LEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELR 376 (414)
T ss_pred ccCCCCCCcCcchHhHHHHHHHHHHHHHhhc--cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999997532 13456889999999999999999999999888877654
No 45
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=8.1e-33 Score=292.49 Aligned_cols=329 Identities=17% Similarity=0.165 Sum_probs=207.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC-CC-----c-------ccchhhhcccc--------cc-ceE
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE-PD-----R-------IVDCVEEIDAQ--------QV-LGY 108 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~-~~-----r-------~~~~l~~l~~~--------~~-~g~ 108 (502)
..+..+|+||||||+||++|+.|+++|++|+|+||++.. .. + ..++|+.++.. .. .+.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGD 157 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccc
Confidence 356799999999999999999999999999999998632 11 1 12555555311 10 001
Q ss_pred EE--EECC--ceeeeeccCcC---CCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCC
Q 010765 109 AL--FKDG--KSTRLSYPLEK---FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKD 180 (502)
Q Consensus 109 ~~--~~~g--~~~~~~~~~~~---~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~ 180 (502)
.+ +.++ ......++... ....+.++.++|..|++.|.+.+.. ..+++++ |+++.++++. |++...+
T Consensus 158 ~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~---~~i~~g~~V~~I~~~~d~---VtV~~~d 231 (668)
T PLN02927 158 RINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE---DVIRNESNVVDFEDSGDK---VTVVLEN 231 (668)
T ss_pred eeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC---CEEEcCCEEEEEEEeCCE---EEEEECC
Confidence 11 1111 11112221100 0112335689999999999876532 2467775 9999887774 4466677
Q ss_pred CcEEEEecCEEEEecCCCchhhhhhcCCCCCCccceeEEEEeecCC-CC---CCceEEEEcCCCcEEEEecCCCeEEEEE
Q 010765 181 GQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQL-PF---ANHGHVILADPSPILFYPISSTEVRCLV 256 (502)
Q Consensus 181 G~~~~v~ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 256 (502)
|++ +++|+||+|||++|.+|+.+..........+..+... .+. +. ......+.++..++..++.+++...|+.
T Consensus 232 G~t--i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi-~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~ 308 (668)
T PLN02927 232 GQR--YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGI-ADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYA 308 (668)
T ss_pred CCE--EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEE-cCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEE
Confidence 765 4599999999999999999854322222222222211 111 11 1112344566667777788777666654
Q ss_pred EeCCCCCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCC-CCCCCCCCCEEEEeCCCCCCCCCCchh
Q 010765 257 DVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSM-PADPQPTPGALLMGDAFNMRHPLTGGG 335 (502)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~G~G 335 (502)
..+.........+..++.+++.+ +.+.+.+.+.+. ..+...+..++++.. +..+|..|||+|+|||||.|+|+.|||
T Consensus 309 f~~~p~~~~~~~~~~~e~L~~~f-~~w~~~v~elI~-~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG 386 (668)
T PLN02927 309 FHEEPAGGADAPNGMKKRLFEIF-DGWCDNVLDLLH-ATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQG 386 (668)
T ss_pred EEECCccccccchhHHHHHHHHh-ccCCHHHHHHHH-hCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccc
Confidence 33321111112334555555544 356666665443 223233334444433 335788999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCccCC----CCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhh
Q 010765 336 MTVALSDIVVLRNLLKPLHD----FNDAASLGRYLESFYTLRKPVASTINTLAGALYKV 390 (502)
Q Consensus 336 ~n~al~Da~~La~~L~~~~~----~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~ 390 (502)
+|+||+||..|+++|..... ......++.+|+.|+++|+|++..++..++.....
T Consensus 387 ~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~ 445 (668)
T PLN02927 387 GCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIM 445 (668)
T ss_pred hHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976421 11223578899999999999999998876654433
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=6.8e-31 Score=271.45 Aligned_cols=324 Identities=16% Similarity=0.138 Sum_probs=196.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-----chhhhcc------ccccceEEEEECCceee
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-----DCVEEID------AQQVLGYALFKDGKSTR 118 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-----~~l~~l~------~~~~~g~~~~~~g~~~~ 118 (502)
++..++||+||||||+|+++|+.|+++|++|+|+||++..+.... ..+++++ ...+.+..++..+.. .
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~-~ 113 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNV-A 113 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCce-E
Confidence 667789999999999999999999999999999999854321111 2233222 123334444432221 2
Q ss_pred eeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeC--CeEEEEEEEeC-----CCcEEEEecCEE
Q 010765 119 LSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEEN--GTIKGVQYKTK-----DGQELRAYAPLT 191 (502)
Q Consensus 119 ~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~--~~v~~v~~~~~-----~G~~~~v~ad~v 191 (502)
+.++. ..........++|..|++.|++++.+. |++++.++++++..++ +....|++... +|+..+++||+|
T Consensus 114 v~~~~-~~~~~~~~~~v~R~~~d~~L~~~A~~~-Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~V 191 (450)
T PLN00093 114 VDIGK-TLKPHEYIGMVRREVLDSFLRERAQSN-GATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAV 191 (450)
T ss_pred EEecc-cCCCCCeEEEecHHHHHHHHHHHHHHC-CCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEE
Confidence 22221 011112223689999999999999987 8999988877776422 22223444432 254456889999
Q ss_pred EEecCCCchhhhhhcCCCCCCccceeEEEEeecCCC------CCCceEEEEc----CCCcEEEEecCCCeEEEEEEeCCC
Q 010765 192 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLENCQLP------FANHGHVILA----DPSPILFYPISSTEVRCLVDVPGQ 261 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~ 261 (502)
|+|||++|.+|+.++..... ...++... ...+ +.....++++ ++++.|++|.++. ..+.+.....
T Consensus 192 IgADG~~S~vrr~lg~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~-~~VG~g~~~~ 266 (450)
T PLN00093 192 IGADGANSRVAKDIDAGDYD---YAIAFQER-IKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVVN 266 (450)
T ss_pred EEcCCcchHHHHHhCCCCcc---eeEEEEEE-EeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCc-EEEEEEEccC
Confidence 99999999999999875321 11222211 1111 1223455655 3457899999854 4444432111
Q ss_pred CCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHH
Q 010765 262 KVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALS 341 (502)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~ 341 (502)
. ....+..+.+++.....+. ..+..+....++...+..++..+|++|+|||||.++|++|+|++.||.
T Consensus 267 ~---~~~~~~~~~l~~~~~~~l~---------~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~ 334 (450)
T PLN00093 267 K---PAIKKYQRATRNRAKDKIA---------GGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAK 334 (450)
T ss_pred C---CChHHHHHHHHHHhhhhcC---------CCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHH
Confidence 1 1112222233221110000 000012222233334456777899999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhcc
Q 010765 342 DIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSS 393 (502)
Q Consensus 342 Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~ 393 (502)
++..+|+.+.+....++.......|+.|++..+.........+..+.++|..
T Consensus 335 sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~ 386 (450)
T PLN00093 335 SGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYR 386 (450)
T ss_pred HHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999987542111111123568899988776666666677777777765
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=3.8e-29 Score=255.91 Aligned_cols=312 Identities=18% Similarity=0.228 Sum_probs=191.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-----chhhhcc------ccccceEEEEECCc-eeeeecc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-----DCVEEID------AQQVLGYALFKDGK-STRLSYP 122 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-----~~l~~l~------~~~~~g~~~~~~g~-~~~~~~~ 122 (502)
|||+||||||+|+++|+.|++.|++|+|+||+...+.... +.++.++ ...+.+..++..+. ......+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 6999999999999999999999999999999822111111 2233332 22334444443322 1111111
Q ss_pred CcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEe----CCCcEEEEecCEEEEecCCC
Q 010765 123 LEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKT----KDGQELRAYAPLTIVCDGCF 198 (502)
Q Consensus 123 ~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~----~~G~~~~v~ad~vI~ADG~~ 198 (502)
. .......++|..|++.|.+++.+. |++++.++++++.++++.+ .|++.+ .+|+..+++||+||+|||.+
T Consensus 81 ~----~~~~~~~~~r~~fd~~L~~~a~~~-G~~v~~~~v~~v~~~~~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~ 154 (388)
T TIGR02023 81 S----EDGYVGMVRREVFDSYLRERAQKA-GAELIHGLFLKLERDRDGV-TLTYRTPKKGAGGEKGSVEADVVIGADGAN 154 (388)
T ss_pred C----CCCceEeeeHHHHHHHHHHHHHhC-CCEEEeeEEEEEEEcCCeE-EEEEEeccccCCCcceEEEeCEEEECCCCC
Confidence 0 111122589999999999999887 8999888888887776654 355543 23444568899999999999
Q ss_pred chhhhhhcCCCCCCccceeEEE--EeecC--C-CCCCceEEEEc----CCCcEEEEecCCCeEEEEEEeCCCCCCCCCch
Q 010765 199 SNLRRSLCKPKVDVPSCFVGLV--LENCQ--L-PFANHGHVILA----DPSPILFYPISSTEVRCLVDVPGQKVPSISNG 269 (502)
Q Consensus 199 S~vR~~l~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 269 (502)
|.+|+.++.+.... ...++. +.... . ..++...++++ ++++.|++|.++. .++...... ......
T Consensus 155 S~v~r~lg~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~-~~vg~~~~~---~~~~~~ 228 (388)
T TIGR02023 155 SPVAKELGLPKNLP--RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDH-IAVGTGTGT---HGFDAK 228 (388)
T ss_pred cHHHHHcCCCCCCc--EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCe-eEEeEEECC---CCCCHH
Confidence 99999998753211 111221 11010 1 11233444543 3467899999753 444332211 111223
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHh
Q 010765 270 EMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNL 349 (502)
Q Consensus 270 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~ 349 (502)
+..+.+.+... +... + ... ......|+ .+..+|..+|++|+|||||+++|++|+|++.||+++..+|+.
T Consensus 229 ~~~~~l~~~~~--~~~~--~----~~~-~~~~~ip~--~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~ 297 (388)
T TIGR02023 229 QLQANLRRRAG--LDGG--Q----TIR-REAAPIPM--KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQA 297 (388)
T ss_pred HHHHHHHHhhC--CCCc--e----Eee-eeeEeccc--cccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHH
Confidence 33333433221 1000 0 000 01112232 344567789999999999999999999999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhcc
Q 010765 350 LKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSS 393 (502)
Q Consensus 350 L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~ 393 (502)
|.+....++ .+.|+.|+++.+..........+.+..++..
T Consensus 298 i~~~l~~~~----~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 337 (388)
T TIGR02023 298 IAEYLQNGD----ATDLRHYERKFMKLYGTTFRVLRVLQMVYYR 337 (388)
T ss_pred HHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 986542111 3568899998877665555556666565533
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=2.2e-29 Score=257.79 Aligned_cols=330 Identities=15% Similarity=0.163 Sum_probs=194.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-----chhhhcc------ccccceEEEEECCceeeeeccC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-----DCVEEID------AQQVLGYALFKDGKSTRLSYPL 123 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-----~~l~~l~------~~~~~g~~~~~~g~~~~~~~~~ 123 (502)
+||+||||||+|+++|+.|+++|++|+|+||+...+.... +.+++++ ...+.+..++..+. ..+.+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~-~~~~~~~ 79 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSN-IAVDIGR 79 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCc-eEEEecc
Confidence 5899999999999999999999999999999854322111 2233322 11233443333222 1122211
Q ss_pred cCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEe--eCCeEEEEEEEeCC-----CcEEEEecCEEEEecC
Q 010765 124 EKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLE--ENGTIKGVQYKTKD-----GQELRAYAPLTIVCDG 196 (502)
Q Consensus 124 ~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~--~~~~v~~v~~~~~~-----G~~~~v~ad~vI~ADG 196 (502)
. .........++|..|++.|.+.+.+. |++++.++++++.. +.+...+|++...+ |+..+++|++||+|||
T Consensus 80 ~-~~~~~~~~~v~R~~~d~~L~~~a~~~-G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG 157 (398)
T TIGR02028 80 T-LKEHEYIGMLRREVLDSFLRRRAADA-GATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADG 157 (398)
T ss_pred C-CCCCCceeeeeHHHHHHHHHHHHHHC-CcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCC
Confidence 0 01111223689999999999999987 89999998777653 22333345554332 5555688999999999
Q ss_pred CCchhhhhhcCCCCCCccceeEEEEeecCCC------CCCceEEEEc----CCCcEEEEecCCCeEEEEEEeCCCCCCCC
Q 010765 197 CFSNLRRSLCKPKVDVPSCFVGLVLENCQLP------FANHGHVILA----DPSPILFYPISSTEVRCLVDVPGQKVPSI 266 (502)
Q Consensus 197 ~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 266 (502)
.+|.+|+.++..... ....+... ...+ +.....++++ ++++.|++|.++. ..+.+.... ...
T Consensus 158 ~~S~v~~~~g~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~-~~VG~g~~~---~~~ 229 (398)
T TIGR02028 158 ANSRVAKEIDAGDYS---YAIAFQER-IRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVA---AKP 229 (398)
T ss_pred cchHHHHHhCCCCcc---eEEEEEEE-eeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCe-EEEEEEeCC---CCc
Confidence 999999999864321 11222111 1122 1233455665 3468999999853 344442211 111
Q ss_pred CchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHH
Q 010765 267 SNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVL 346 (502)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~L 346 (502)
....+.+.++.. ....+. ..+...+...+.......++..+|++|+|||||+++|++|+|++.||+++..+
T Consensus 230 ~~~~~~~~l~~~----~~~~~~-----~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~a 300 (398)
T TIGR02028 230 EIKRLQSGIRAR----AAGKVA-----GGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMC 300 (398)
T ss_pred cHHHHHHhhhhh----hhhccC-----CCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHH
Confidence 111222222211 000000 00000122222222344567789999999999999999999999999999999
Q ss_pred HHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhccCChhHHHHHHHH
Q 010765 347 RNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSSSPDQARKEMRQA 405 (502)
Q Consensus 347 a~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~~~~~~~~~lr~~ 405 (502)
|+.+.+....++.......|+.|++..+.........+..+.++|.. ++.....+-+.
T Consensus 301 a~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 358 (398)
T TIGR02028 301 AEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR-SNAGREAFVEM 358 (398)
T ss_pred HHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHH
Confidence 99997643211111124568889987766555556666666676665 34433333333
No 49
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=252.37 Aligned_cols=319 Identities=20% Similarity=0.251 Sum_probs=165.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc--c-------cchhhhcccc--------ccceEEEEE--CC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR--I-------VDCVEEIDAQ--------QVLGYALFK--DG 114 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r--~-------~~~l~~l~~~--------~~~g~~~~~--~g 114 (502)
+.+|+|||||++||++|++|+|.|++|+|+|++..+... . +.+++.++.. +..+..... .|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 458999999999999999999999999999997554321 1 1444444421 111221211 12
Q ss_pred c-eeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEE-EEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 115 K-STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTS-LLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~-~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
+ ...+.++..+ ..-..|.|..+.+.+...+...+++.+.... .+. ..+.+.......+...+|.+ +.+|++
T Consensus 82 ~~~~~~~~~~~~----~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~--~~~dll 155 (420)
T KOG2614|consen 82 KEVSRILYGEPD----EYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTT--VKGDLL 155 (420)
T ss_pred CeeEecccCCch----HHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcE--EEeeEE
Confidence 2 2233333211 1112344555544444444445555555422 111 11111111123345667775 459999
Q ss_pred EEecCCCchhhhhhcCCCCCCc--cceeEEEEeecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCC----CCCCC
Q 010765 192 IVCDGCFSNLRRSLCKPKVDVP--SCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPG----QKVPS 265 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~ 265 (502)
|||||++|.||+.++...+.+. ..+.++.+.....+. ...++...+..+...|.+.....+++.... ...+.
T Consensus 156 igCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~--~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~ 233 (420)
T KOG2614|consen 156 IGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPF--GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAP 233 (420)
T ss_pred EEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCc--ccceecccCCeEEEcccCCceEEEEEeecCCcccccccC
Confidence 9999999999999987543333 234444433222222 222333333333333443333233332210 00111
Q ss_pred CC-chHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCC-----CCCCCCCCEEEEeCCCCCCCCCCchhHhHH
Q 010765 266 IS-NGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMP-----ADPQPTPGALLMGDAFNMRHPLTGGGMTVA 339 (502)
Q Consensus 266 ~~-~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~rv~LvGDAAh~~~P~~G~G~n~a 339 (502)
.+ ++.+.....+. ...+++.+.+.+ +.++.+.+...+...++ ......++|+|+|||||+|.|+.|||+|+|
T Consensus 234 ~~e~~~l~~~~~~v-~~~~~en~~d~i-~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a 311 (420)
T KOG2614|consen 234 FDEPEKLKKTSLEV-VDFFPENFPDII-ELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCA 311 (420)
T ss_pred cCCHHHHhhhHHHH-HHHhHHhHHHHH-HhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccch
Confidence 11 11222211111 122333333322 22222233333233322 234455789999999999999999999999
Q ss_pred HHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHh
Q 010765 340 LSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYK 389 (502)
Q Consensus 340 l~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~ 389 (502)
++|+..|+++|.++.. +.+...+.|++ .+....+.+++...|.
T Consensus 312 ~ED~~VLa~~L~~~~~-----d~s~~~~~~s~--~~e~~~~ie~a~~~Y~ 354 (420)
T KOG2614|consen 312 FEDCVVLAECLDEAIN-----DVSLAGEEYSR--ENESHAIIELAMYSYK 354 (420)
T ss_pred HHHHHHHHHHHHHhcc-----chhccccceec--ccchhHHHHHHHHHHH
Confidence 9999999999987531 13444555554 3333444444444443
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=4.7e-28 Score=238.42 Aligned_cols=273 Identities=25% Similarity=0.299 Sum_probs=167.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc------chhhhcccc------ccceEEEEEC-Cceeeeec
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------DCVEEIDAQ------QVLGYALFKD-GKSTRLSY 121 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------~~l~~l~~~------~~~g~~~~~~-g~~~~~~~ 121 (502)
+||+||||||+|+++|+.|++.|++|+|+||+..+....+ ..++.+... ......++.. ++. ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDS--VEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcE--EEe
Confidence 6999999999999999999999999999999976543211 122222111 0111111211 211 111
Q ss_pred cCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 122 PLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 122 ~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
+ .....++.++|..|.+.|.+.+.+. ++++++++ ++++..+++.+. +.+ .++. .+++||+||+|||.+|.
T Consensus 79 ~----~~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~~~~~~-~~~--~~~~-~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 79 P----IETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIHDDRVV-VIV--RGGE-GTVTAKIVIGADGSRSI 149 (295)
T ss_pred c----cCCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEeCCEEE-EEE--cCcc-EEEEeCEEEECCCcchH
Confidence 1 0123456899999999999999887 89998887 888887777542 332 3322 34679999999999999
Q ss_pred hhhhhcCCCCCCccceeEEEEe-ecCC--CCCCceEEEEc----CCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHHH
Q 010765 201 LRRSLCKPKVDVPSCFVGLVLE-NCQL--PFANHGHVILA----DPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMAN 273 (502)
Q Consensus 201 vR~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (502)
+|+.++........ ..++... ..+. ...+...++.. ++++.|++|.+++...+.+...... ...+.++
T Consensus 150 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~ 224 (295)
T TIGR02032 150 VAKKLGLRKEPREL-GVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLKK 224 (295)
T ss_pred HHHhcCCCCCCcce-eeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHHH
Confidence 99988765422221 1222111 1111 11223334443 3478899999988766655443222 1233444
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhcCCeeeccCC-CCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhc
Q 010765 274 YLKAMVAPQVPPELHEAFVSAVERGNIRTMPNR-SMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLL 350 (502)
Q Consensus 274 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L 350 (502)
.+++++. ..+ .+.. .+..+...++.. .....++..+||+|+|||||+++|++|||||+||+||..+|+.|
T Consensus 225 ~~~~~~~-~~~-~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 225 YLKDFLA-RRP-ELKD-----AETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHH-hCc-cccc-----CcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 4444332 111 1100 000011111111 12455777899999999999999999999999999999999875
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.96 E-value=2e-27 Score=243.47 Aligned_cols=302 Identities=23% Similarity=0.289 Sum_probs=191.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------chhhhcccc-------ccceEEEEECCceee
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------DCVEEIDAQ-------QVLGYALFKDGKSTR 118 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------~~l~~l~~~-------~~~g~~~~~~g~~~~ 118 (502)
+++||+||||||||++||+.|++.|++|+|+||+..+..+.+ ..++++... .+.+..++..+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 469999999999999999999999999999999977765443 233333222 222222332222222
Q ss_pred eeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 119 LSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 119 ~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
+..+. ..++.++|..|++.|.+.+++. |++++.++ +..+..+++++..+.. .+. .+++|++||+|||.
T Consensus 82 ~~~~~------~~~y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~~~~~~~~~---~~~-~e~~a~~vI~AdG~ 150 (396)
T COG0644 82 IEVPV------GEGYIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIREDDGVVVGVR---AGD-DEVRAKVVIDADGV 150 (396)
T ss_pred EecCC------CceEEEEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEeCCcEEEEEE---cCC-EEEEcCEEEECCCc
Confidence 22211 4578999999999999999998 89999998 9999888876543322 222 56789999999999
Q ss_pred CchhhhhhcCCCCCCccceeEEEEeecCCCC-CCceEEE-E----cCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHH
Q 010765 198 FSNLRRSLCKPKVDVPSCFVGLVLENCQLPF-ANHGHVI-L----ADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEM 271 (502)
Q Consensus 198 ~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (502)
+|.+++.++.. ...+..+..........|. .....+. . .+.++.|+||.+++..++.+...... +.... ..
T Consensus 151 ~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~~~~~-~~ 227 (396)
T COG0644 151 NSALARKLGLK-DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PSLSP-FL 227 (396)
T ss_pred chHHHHHhCCC-CCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-cCCCc-hH
Confidence 99999999987 2212222111111223332 2222222 2 24578899999999888877665333 22222 11
Q ss_pred HHHHHHHcC-CCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhc
Q 010765 272 ANYLKAMVA-PQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLL 350 (502)
Q Consensus 272 ~~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L 350 (502)
+.++++.. +...+.+.. .+..+ ..-...|.......++..++++|+||||.+++|++|.|+..||..|..+|+.+
T Consensus 228 -~~l~~f~~~~~~~~~~~~--~~~~~-~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i 303 (396)
T COG0644 228 -ELLERFKEHPAIRKLLLG--GKILE-YAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAI 303 (396)
T ss_pred -HHHHHHHhCcccchhccC--CceEE-EeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHH
Confidence 33333322 111111000 00000 01122333333333367789999999999999999999999999999999999
Q ss_pred CccCCCCChHHHHHHHHHHHHHcccch
Q 010765 351 KPLHDFNDAASLGRYLESFYTLRKPVA 377 (502)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~Y~~~R~p~~ 377 (502)
.+..... .+.|..|++..+...
T Consensus 304 ~~~~~~~-----~~~l~~Y~~~~~~~~ 325 (396)
T COG0644 304 AEALEGG-----EEALAEYERLLRKSL 325 (396)
T ss_pred HHHHHcC-----hhHHHHHHHHHHHHH
Confidence 8653111 456667877766444
No 52
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=8.1e-28 Score=264.22 Aligned_cols=302 Identities=19% Similarity=0.183 Sum_probs=186.1
Q ss_pred cEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCCC--c-------ccchhhhcccc----------ccceEEEEECC
Q 010765 56 DVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPD--R-------IVDCVEEIDAQ----------QVLGYALFKDG 114 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~~--r-------~~~~l~~l~~~----------~~~g~~~~~~g 114 (502)
+|+||||||+||++|+.|++. |++|+|+||++.... . ..+.++..+.. ......+...+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 899999999865321 1 11223222210 01112222222
Q ss_pred ceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEE
Q 010765 115 KSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIV 193 (502)
Q Consensus 115 ~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ 193 (502)
... .. .......++|..|.+.|.+++.+. |+++++++ ++++.+ ....+|+||+
T Consensus 82 ~~~-~~-------~g~~~~~i~R~~L~~~L~e~a~~~-GV~i~~g~~v~~i~~-----------------~~~~~D~VVg 135 (765)
T PRK08255 82 RRI-RS-------GGHGFAGIGRKRLLNILQARCEEL-GVKLVFETEVPDDQA-----------------LAADADLVIA 135 (765)
T ss_pred EEE-EE-------CCeeEecCCHHHHHHHHHHHHHHc-CCEEEeCCccCchhh-----------------hhcCCCEEEE
Confidence 210 00 001113589999999999999998 89999987 554321 0135999999
Q ss_pred ecCCCchhhhhhcCCCCC----CccceeEEEEeecCCCCCCceEEE-EcCCCc--EEEEecCCCeEEEEEEeCCC-----
Q 010765 194 CDGCFSNLRRSLCKPKVD----VPSCFVGLVLENCQLPFANHGHVI-LADPSP--ILFYPISSTEVRCLVDVPGQ----- 261 (502)
Q Consensus 194 ADG~~S~vR~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~p~~~~~~~~~~~~~~~----- 261 (502)
|||.+|.+|+++...... ....+.++. ............ ....++ ...||++++...+++..+.+
T Consensus 136 ADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g---~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 212 (765)
T PRK08255 136 SDGLNSRIRTRYADTFQPDIDTRRCRFVWLG---THKVFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAA 212 (765)
T ss_pred cCCCCHHHHHHHHhhcCCceecCCCceEEec---CCCcccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhc
Confidence 999999999987432211 111222221 110011111111 112232 34578887766666665422
Q ss_pred CCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCC----EEEEeCCCCCCCCCCchhHh
Q 010765 262 KVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPG----ALLMGDAFNMRHPLTGGGMT 337 (502)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----v~LvGDAAh~~~P~~G~G~n 337 (502)
..+..+.++..+.+.+.+....+. . +.+....................+|..+| |+|+|||||.++|+.|||+|
T Consensus 213 ~~~~~~~~~~~~~l~~~f~~~~~~-~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~ 290 (765)
T PRK08255 213 GLDEMSQEESIAFCEKLFADYLDG-H-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTK 290 (765)
T ss_pred CCccCCHHHHHHHHHHHhHHhcCC-C-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHH
Confidence 123344555556665544432221 1 11111100001111122233567899998 99999999999999999999
Q ss_pred HHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHHHHHHhhhcc
Q 010765 338 VALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLAGALYKVFSS 393 (502)
Q Consensus 338 ~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a~~~~~~~~~ 393 (502)
+||+||..|+++|.... ...+.+|+.|+++|++++..++..++....+|..
T Consensus 291 ~aieDa~~La~~L~~~~-----~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~ 341 (765)
T PRK08255 291 LALEDAIELARCLHEHP-----GDLPAALAAYEEERRVEVLRIQNAARNSTEWFEN 341 (765)
T ss_pred HHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Confidence 99999999999997642 2578899999999999999999999877766654
No 53
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.3e-25 Score=226.66 Aligned_cols=292 Identities=16% Similarity=0.133 Sum_probs=165.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC----Cccc---------chhhhccccccceEEEEECCc---eee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP----DRIV---------DCVEEIDAQQVLGYALFKDGK---STR 118 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~----~r~~---------~~l~~l~~~~~~g~~~~~~g~---~~~ 118 (502)
+||+||||||+|+++|+.|+++ ++|+|+||++... .+.+ +.++.++..... ....+.. ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~--~~~~~~~~~~~~~ 78 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPK--DVIANPQIFAVKT 78 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCc--ceeeccccceeeE
Confidence 7999999999999999999999 9999999986432 1111 344443321000 0000000 011
Q ss_pred eeccCcC-CCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecC
Q 010765 119 LSYPLEK-FHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 196 (502)
Q Consensus 119 ~~~~~~~-~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG 196 (502)
+.+.... .......+.++|..|++.|.+.+ +. ++++++++ ++++.++++.+. |.+ .++|+..+++||+||+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~-gv~v~~~~~v~~i~~~~~~~~-v~~-~~~g~~~~i~a~~vV~AdG 154 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PA-SVEVYHNSLCRKIWREDDGYH-VIF-RADGWEQHITARYLVGADG 154 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHHH-hc-CCEEEcCCEEEEEEEcCCEEE-EEE-ecCCcEEEEEeCEEEECCC
Confidence 1111000 00111234699999999999854 33 79999997 888887766532 333 2466655678999999999
Q ss_pred CCchhhhhhcCCCCCCccceeEEEEe-ecCCCCCCceEEEEc---CCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHH
Q 010765 197 CFSNLRRSLCKPKVDVPSCFVGLVLE-NCQLPFANHGHVILA---DPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMA 272 (502)
Q Consensus 197 ~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (502)
.+|.+|+.++.... ...+.++..+ ....+. +...+++. .+++.|.+|..+.. .....++...... ..+.+.
T Consensus 155 ~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~W~~p~~~~~-~~g~~~~~~~~~~-~~~~l~ 229 (351)
T PRK11445 155 ANSMVRRHLYPDHQ--IRKYVAIQQWFAEKHPV-PFYSCIFDNEITDCYSWSISKDGYF-IFGGAYPMKDGRE-RFETLK 229 (351)
T ss_pred CCcHHhHHhcCCCc--hhhEEEEEEEecCCCCC-CCcceEEeccCCCceEEEeCCCCcE-EecccccccchHH-HHHHHH
Confidence 99999999875422 1223333222 111111 11222222 23566777875532 2211122110000 000111
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCC--CCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhc
Q 010765 273 NYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADP--QPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLL 350 (502)
Q Consensus 273 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L 350 (502)
+.+.+ ....+.+.+. .. ....+....... ...+||+|||||||.++|++|+|++.|++|+..|++.|
T Consensus 230 ~~l~~-~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l 298 (351)
T PRK11445 230 EKLSA-FGFQFGKPVK--------TE--ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVL 298 (351)
T ss_pred HHHHh-cccccccccc--------cc--cccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHH
Confidence 12211 1111111110 00 001111111122 23588999999999999999999999999999999999
Q ss_pred CccCCCCChHHHHHHHHHHHHHcccch
Q 010765 351 KPLHDFNDAASLGRYLESFYTLRKPVA 377 (502)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~Y~~~R~p~~ 377 (502)
.+.. ...++.|++..+...
T Consensus 299 ~~~~--------~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 299 NKQP--------EKLNTAYWRKTRKLR 317 (351)
T ss_pred Hhcc--------cchHHHHHHHHHHHH
Confidence 7432 456889998877655
No 54
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.94 E-value=4.4e-26 Score=219.47 Aligned_cols=340 Identities=18% Similarity=0.168 Sum_probs=222.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC----CCeEEEEecCCCCCC-----------ccc-------------chhhhcccc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVTEPD-----------RIV-------------DCVEEIDAQ 103 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~----G~~v~lvEr~~~~~~-----------r~~-------------~~l~~l~~~ 103 (502)
+..+||+||||||+|+++|..|... -.+|.|+|-...+.- |.. ++++.+...
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 4579999999999999999999864 479999998844211 111 333333333
Q ss_pred cc---ceEEEEECCceeeeeccCcCCCCCCcceeecchHHHHHHH--HHHHcCCCeEEEece-EEEEEee-----CCeEE
Q 010765 104 QV---LGYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMR--EKAASLPNVRLEQGT-VTSLLEE-----NGTIK 172 (502)
Q Consensus 104 ~~---~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~--~~a~~~~~v~i~~~~-v~~~~~~-----~~~v~ 172 (502)
+. .++.+++.-....+.+..+.... ..++.+...-++..|+ +...+.+++++.+.+ +..+... ++..-
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~~-d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVGI-DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred ccccccceeeecccchhhhhhccccccc-cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 22 22333333222333443332222 2356777878888888 555666789998886 6666431 12222
Q ss_pred EEEEEeCCCcEEEEecCEEEEecCCCchhhhhhcCCCCCCccceeEEEEe---ecCCCCCCceEEEEcCCCcEEEEecCC
Q 010765 173 GVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVPSCFVGLVLE---NCQLPFANHGHVILADPSPILFYPISS 249 (502)
Q Consensus 173 ~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~ 249 (502)
...+...+|.. +..|++|||||.+|.+|+..+++..+..+...+++.. .++......++..+-+.|++.+.|.++
T Consensus 193 ~~~i~l~dg~~--~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d 270 (481)
T KOG3855|consen 193 WFHITLTDGIN--FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270 (481)
T ss_pred eEEEEeccCce--eeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeeccccc
Confidence 35566778875 4599999999999999999999887776655555543 333444555666777889999999998
Q ss_pred CeEEEEEEeCCC---CCCCCCchHHHHHHHHHcCCC---CC----------------hhhHHHHHHHHh-----------
Q 010765 250 TEVRCLVDVPGQ---KVPSISNGEMANYLKAMVAPQ---VP----------------PELHEAFVSAVE----------- 296 (502)
Q Consensus 250 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---~~----------------~~l~~~~~~~~~----------- 296 (502)
+.....|...++ .+.++.++.+.+.+...+.-+ .+ +.+........+
T Consensus 271 ~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~ 350 (481)
T KOG3855|consen 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVG 350 (481)
T ss_pred ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEec
Confidence 866666654322 123344455555554433211 10 011100000000
Q ss_pred cCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccc
Q 010765 297 RGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPV 376 (502)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~ 376 (502)
...-..+|+....++.|...|+.|+|||||.+||+.|||.|+++.|+..|...|..+...+........|+-|+.+|.+.
T Consensus 351 dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~ 430 (481)
T KOG3855|consen 351 DKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQH 430 (481)
T ss_pred ccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhh
Confidence 01124678888889999999999999999999999999999999999999999986531112222345788999999888
Q ss_pred hhHHHHHHHHHHhhhccC
Q 010765 377 ASTINTLAGALYKVFSSS 394 (502)
Q Consensus 377 ~~~~~~~a~~~~~~~~~~ 394 (502)
...+.-....+.++|..+
T Consensus 431 N~~ll~~vdkl~klY~t~ 448 (481)
T KOG3855|consen 431 NYVLLGAVDKLHKLYATS 448 (481)
T ss_pred cchHHHHHHHHHHHHhcc
Confidence 888877777788888765
No 55
>PRK10015 oxidoreductase; Provisional
Probab=99.94 E-value=1.7e-24 Score=223.47 Aligned_cols=307 Identities=19% Similarity=0.248 Sum_probs=177.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------chhhhccc-----c----ccce--EEEEEC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------DCVEEIDA-----Q----QVLG--YALFKD 113 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------~~l~~l~~-----~----~~~g--~~~~~~ 113 (502)
+.++||+||||||+|+++|+.|+++|++|+|+||...+..+.+ ..++.+.. . .+.. +.+...
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 82 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTE 82 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeC
Confidence 4569999999999999999999999999999999876543321 22222211 0 0111 112222
Q ss_pred CceeeeeccCcCCCC-CCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 114 GKSTRLSYPLEKFHA-DVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 114 g~~~~~~~~~~~~~~-~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
+....+.+....... ...++.+.|..|++.|.+.+++. |++++.++ |+++..+++++.++. . ++. +++||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~-Gv~i~~~~~V~~i~~~~~~v~~v~--~-~~~--~i~A~~V 156 (429)
T PRK10015 83 ESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQA-GAQFIPGVRVDALVREGNKVTGVQ--A-GDD--ILEANVV 156 (429)
T ss_pred CCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCEEEEEE--e-CCe--EEECCEE
Confidence 222233332222111 22468899999999999999987 89999986 888887777665443 2 232 4679999
Q ss_pred EEecCCCchhhhhhcCCCCCCcc-ceeEEEEeecCCCC-----------C-CceEEEEcC--CC---cEEEEecCCCeEE
Q 010765 192 IVCDGCFSNLRRSLCKPKVDVPS-CFVGLVLENCQLPF-----------A-NHGHVILAD--PS---PILFYPISSTEVR 253 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~-----------~-~~~~~~~~~--~~---~~~~~p~~~~~~~ 253 (502)
|+|||.+|.+++.++......+. ...++... ..++. + ...+++.+. .+ ..|+|+.. +...
T Consensus 157 I~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~-~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~-d~v~ 234 (429)
T PRK10015 157 ILADGVNSMLGRSLGMVPASDPHHYAVGVKEV-IGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNK-DSIS 234 (429)
T ss_pred EEccCcchhhhcccCCCcCCCcCeEEEEEEEE-EeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcC-CcEE
Confidence 99999999999998764322221 12232221 11211 1 112222221 12 34566654 3355
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCe-----eeccCCCC-CCCCCCCCCEEEEeCCCCC
Q 010765 254 CLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNI-----RTMPNRSM-PADPQPTPGALLMGDAFNM 327 (502)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~rv~LvGDAAh~ 327 (502)
+.+...-..... ......++++++.. .+.+.+.+ ..+.+ ...|.... ..++...+|++++||||++
T Consensus 235 vGv~~~~~~~~~-~~~~~~~~l~~~~~---~p~~~~~~----~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~ 306 (429)
T PRK10015 235 LGLVCGLGDIAH-AQKSVPQMLEDFKQ---HPAIRPLI----SGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGF 306 (429)
T ss_pred EEEEEehhhhcc-CCCCHHHHHHHHhh---ChHHHHHh----cCCEEEEEeeEEcccCCcccCCccccCCeEEEeccccc
Confidence 544321111110 11223334433211 12222221 11111 12222211 2345667999999999999
Q ss_pred CCC--CCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccc
Q 010765 328 RHP--LTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPV 376 (502)
Q Consensus 328 ~~P--~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~ 376 (502)
++| ++|+||+.||.++...|+.+.+....++ -....|+.|++.-+..
T Consensus 307 v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d--~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 307 CLNLGFTVRGMDLAIASAQAAATTVIAAKERAD--FSASSLAQYKRELEQS 355 (429)
T ss_pred ccccCccccchhHHHHHHHHHHHHHHHHHhcCC--CccccHHHHHHHHHHC
Confidence 985 6999999999999999998876532111 1234678888776543
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=4.2e-24 Score=218.99 Aligned_cols=301 Identities=18% Similarity=0.195 Sum_probs=174.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC-Ccccchh----hhccccccceEEEEECCceeeeeccCcCCCCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIVDCV----EEIDAQQVLGYALFKDGKSTRLSYPLEKFHADV 130 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~-~r~~~~l----~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 130 (502)
||+||||||+|+++|+.|++.|++|+|+|+++..+ ++.+..+ +++....... ..+ .+. ....++........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVE-HVW-PDV-YEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHh-hcC-CCc-eEEecCCcchhcCC
Confidence 89999999999999999999999999999986433 2222222 1111110000 000 000 00111100001111
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhhcCCCC
Q 010765 131 SGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKV 210 (502)
Q Consensus 131 ~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~~ 210 (502)
....+++..|.+.|.+.+.+. +++++.++++++..+++.. +.+...+|++ ++|++||+|||.+|.+++.......
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~-gv~~~~~~v~~i~~~~~~~--~~v~~~~g~~--~~a~~VI~A~G~~s~~~~~~~~~~~ 152 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEG-GVLWLERKAIHAEADGVAL--STVYCAGGQR--IQARLVIDARGFGPLVQYVRFPLNV 152 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhc-CcEEEccEEEEEEecCCce--eEEEeCCCCE--EEeCEEEECCCCchhcccccCCCCc
Confidence 234689999999999999888 7899888888887763432 3344556654 5699999999999977543321111
Q ss_pred CCccceeEEEEeecCCCCCCceEEEE----cC----------CCcEEEEecCCCeEEEEEEeCC-CCCCCCCchHHHHHH
Q 010765 211 DVPSCFVGLVLENCQLPFANHGHVIL----AD----------PSPILFYPISSTEVRCLVDVPG-QKVPSISNGEMANYL 275 (502)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 275 (502)
.. ..+.++.+.....+......+++ .+ +++.|++|.+++... +.... ...+....+++++.+
T Consensus 153 ~~-q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~--v~~~~~~~~~~~~~~~~~~~l 229 (388)
T TIGR01790 153 GF-QVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVF--IEETSLADRPALPRDRLRQRI 229 (388)
T ss_pred eE-EEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEE--EEeccccCCCCCCHHHHHHHH
Confidence 11 23455544322111111111111 11 126788999887543 33211 111233445666666
Q ss_pred HHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCC
Q 010765 276 KAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHD 355 (502)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~ 355 (502)
.+++... ..... .+.......+|+..... +..+|++++|||||+++|++|+|++.+++++..+|+.|.+...
T Consensus 230 ~~~~~~~-g~~~~-----~i~~~~~~~iP~~~~~~--~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~ 301 (388)
T TIGR01790 230 LARLNAQ-GWQIK-----TIEEEEWGALPVGLPGP--FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALC 301 (388)
T ss_pred HHHHHHc-CCeee-----EEEeeeeEEEecccCCC--ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhc
Confidence 5544211 10100 00111223445543322 3678999999999999999999999999999999999976431
Q ss_pred CCChHHHHHHHHHHHHHcccchhH
Q 010765 356 FNDAASLGRYLESFYTLRKPVAST 379 (502)
Q Consensus 356 ~~~~~~~~~~l~~Y~~~R~p~~~~ 379 (502)
.+ ...+++.|+...++...+
T Consensus 302 ~~----~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 302 QS----SELATAAWDGLWPTERRR 321 (388)
T ss_pred cC----HHHHHHHHHHhchHHHHH
Confidence 11 356788887665554444
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.93 E-value=1e-23 Score=217.85 Aligned_cols=306 Identities=21% Similarity=0.253 Sum_probs=174.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------chhhhccc-----cccc------eEEEEEC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------DCVEEIDA-----QQVL------GYALFKD 113 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------~~l~~l~~-----~~~~------g~~~~~~ 113 (502)
.+++||+||||||+|+++|+.|+++|++|+|+||...+..+.+ ..++.+.. .+.. .+.+...
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcC
Confidence 4569999999999999999999999999999999876543321 22222211 0111 1111111
Q ss_pred CceeeeeccCcCC-CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 114 GKSTRLSYPLEKF-HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 114 g~~~~~~~~~~~~-~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
.....+.+..... .....++.+.|..|++.|.+.+++. |++++.++ |+++..+++.+.++. .+|.+ ++||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~-Gv~i~~~~~V~~i~~~~g~v~~v~---~~g~~--i~A~~V 156 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQRDGKVVGVE---ADGDV--IEAKTV 156 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEeCCEEEEEE---cCCcE--EECCEE
Confidence 1112222221111 1223467899999999999999887 89999997 999887777654332 34553 569999
Q ss_pred EEecCCCchhhhhhcCCCCCCccceeEEEEee-cCCC-----------C-CCceEEEEcC--CC---cEEEEecCCCeEE
Q 010765 192 IVCDGCFSNLRRSLCKPKVDVPSCFVGLVLEN-CQLP-----------F-ANHGHVILAD--PS---PILFYPISSTEVR 253 (502)
Q Consensus 192 I~ADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~~~-----------~-~~~~~~~~~~--~~---~~~~~p~~~~~~~ 253 (502)
|+|||.+|.+++.++....... ...++.+.. ..++ . ....+++.+. ++ ..|+|+. .+...
T Consensus 157 I~A~G~~s~l~~~lgl~~~~~~-~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~s 234 (428)
T PRK10157 157 ILADGVNSILAEKLGMAKRVKP-TDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTN-ENTLS 234 (428)
T ss_pred EEEeCCCHHHHHHcCCCCCCCC-cEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEEc-CCeEE
Confidence 9999999999999886542222 222222211 1111 1 1122233332 11 2456654 33344
Q ss_pred EEEEeCCCCCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCe-----eeccCCC-CCCCCCCCCCEEEEeCCCCC
Q 010765 254 CLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNI-----RTMPNRS-MPADPQPTPGALLMGDAFNM 327 (502)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~rv~LvGDAAh~ 327 (502)
+.+....+..... .....++++.+ . . .+.+...+ ..+.. ...|... ...++...++++++||||.+
T Consensus 235 vG~~~~~~~~~~~-~~~~~~~l~~~-~-~-~p~v~~~~----~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~ 306 (428)
T PRK10157 235 LGLVCGLHHLHDA-KKSVPQMLEDF-K-Q-HPAVAPLI----AGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGM 306 (428)
T ss_pred EEEEEehHHhccc-CCCHHHHHHHH-H-h-CchHHHHh----CCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccc
Confidence 4443321111111 11222333221 1 1 11121111 11111 1112111 12334567899999999999
Q ss_pred CCC--CCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHccc
Q 010765 328 RHP--LTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKP 375 (502)
Q Consensus 328 ~~P--~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p 375 (502)
++| ++|+|++.||.++..+|+.+.+... .++.....|..|++.-+.
T Consensus 307 v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~--~~~~s~~~l~~Y~~~l~~ 354 (428)
T PRK10157 307 CMNLGFTIRGMDLAIAAGEAAAKTVLSAMK--SDDFSKQKLAEYRQHLES 354 (428)
T ss_pred ccccCceeeeHHHHHHHHHHHHHHHHHHHh--cCCcchhhHHHHHHHHHH
Confidence 998 5999999999999999998876532 112234568888876544
No 58
>PLN02697 lycopene epsilon cyclase
Probab=99.92 E-value=8e-22 Score=205.96 Aligned_cols=301 Identities=17% Similarity=0.187 Sum_probs=176.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc--c-chhhhcccc-----ccceEEEEECCceeeeeccC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI--V-DCVEEIDAQ-----QVLGYALFKDGKSTRLSYPL 123 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~--~-~~l~~l~~~-----~~~g~~~~~~g~~~~~~~~~ 123 (502)
...+||+||||||+|+++|+.|++.|++|+|+|+........ + ..++++... ...+..++.+.... ..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~-~~--- 181 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKP-IM--- 181 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCce-ee---
Confidence 456899999999999999999999999999999863322221 1 222222211 11122222211110 00
Q ss_pred cCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhh
Q 010765 124 EKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 124 ~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
...++ ..++|..|.+.|.+++.+. |+++..++|+++.++++.+..+ ...+|.+ ++|++||+|||.+|. +
T Consensus 182 ---~~~~Y-g~V~R~~L~~~Ll~~a~~~-GV~~~~~~V~~I~~~~~~~~vv--~~~dG~~--i~A~lVI~AdG~~S~--r 250 (529)
T PLN02697 182 ---IGRAY-GRVSRTLLHEELLRRCVES-GVSYLSSKVDRITEASDGLRLV--ACEDGRV--IPCRLATVASGAASG--R 250 (529)
T ss_pred ---ccCcc-cEEcHHHHHHHHHHHHHhc-CCEEEeeEEEEEEEcCCcEEEE--EEcCCcE--EECCEEEECCCcChh--h
Confidence 01111 2589999999999999886 7898776799988766654322 2355654 569999999999993 2
Q ss_pred hhcCCC--CC-CccceeEEEEeecCCCCCCceEEEEc---------------CCCcEEEEecCCCeEEE-EEEeCCCCCC
Q 010765 204 SLCKPK--VD-VPSCFVGLVLENCQLPFANHGHVILA---------------DPSPILFYPISSTEVRC-LVDVPGQKVP 264 (502)
Q Consensus 204 ~l~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~ 264 (502)
.+.... +. ......++.+.-...+.+....+++. .+.+.|++|.+++...+ ...+. ..+
T Consensus 251 l~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~--~~~ 328 (529)
T PLN02697 251 LLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLA--SKD 328 (529)
T ss_pred hhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeec--cCC
Confidence 222211 11 12234455543211222111112211 12467888998885433 11121 122
Q ss_pred CCCchHHHHHHHHHcCC-CCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHH
Q 010765 265 SISNGEMANYLKAMVAP-QVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDI 343 (502)
Q Consensus 265 ~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da 343 (502)
....+.+++.+.+++.. .+. .. .+........|+.. +.+.. .++++++||||+++||.+|.|+..++.+|
T Consensus 329 ~l~~~~l~~~L~~~l~~~Gi~--~~-----~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A 399 (529)
T PLN02697 329 AMPFDLLKKRLMSRLETMGIR--IL-----KTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEA 399 (529)
T ss_pred CCCHHHHHHHHHHHHHhCCCC--cc-----eEEEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhH
Confidence 33445666666655431 111 00 11111223445543 22222 67899999999999999999999999999
Q ss_pred HHHHHhcCccCCCCC-------hHHHHHHHHHHHHHcccchh
Q 010765 344 VVLRNLLKPLHDFND-------AASLGRYLESFYTLRKPVAS 378 (502)
Q Consensus 344 ~~La~~L~~~~~~~~-------~~~~~~~l~~Y~~~R~p~~~ 378 (502)
..+|+.+++.....+ .......++.|+........
T Consensus 400 ~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~ 441 (529)
T PLN02697 400 PKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERK 441 (529)
T ss_pred HHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHH
Confidence 999999987653222 12456778888877655443
No 59
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.90 E-value=2e-21 Score=196.60 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=166.5
Q ss_pred cEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCC-Ccccchhh------------hccccccceEEEEECCceeeee
Q 010765 56 DVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEP-DRIVDCVE------------EIDAQQVLGYALFKDGKSTRLS 120 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~-~r~~~~l~------------~l~~~~~~g~~~~~~g~~~~~~ 120 (502)
||+|||||++|+++|+.|++. |++|+|+|+.+... .+++..++ .+......++.+..++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~-- 78 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRK-- 78 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhh--
Confidence 899999999999999999987 99999999986433 33331111 11111112222221111111
Q ss_pred ccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEec-eEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 121 YPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQG-TVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 121 ~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~-~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
. ......+++.+|.+.|.+.+.. + ++.+ +|+++ +.++ |++ .+|++ ++||+||+|||.+|
T Consensus 79 -----l--~~~Y~~I~r~~f~~~l~~~l~~--~--i~~~~~V~~v--~~~~---v~l--~dg~~--~~A~~VI~A~G~~s 138 (370)
T TIGR01789 79 -----L--KTAYRSMTSTRFHEGLLQAFPE--G--VILGRKAVGL--DADG---VDL--APGTR--INARSVIDCRGFKP 138 (370)
T ss_pred -----c--CCCceEEEHHHHHHHHHHhhcc--c--EEecCEEEEE--eCCE---EEE--CCCCE--EEeeEEEECCCCCC
Confidence 1 1122589999999999877643 2 4445 47777 3332 444 56765 45999999999998
Q ss_pred hhhhhhcCCCCCCccceeEEEEeecCCCCCCc-eE---EEEc-CCC--cEEEEecCCCeEEEEEEeCCC-CCCCCCchHH
Q 010765 200 NLRRSLCKPKVDVPSCFVGLVLENCQLPFANH-GH---VILA-DPS--PILFYPISSTEVRCLVDVPGQ-KVPSISNGEM 271 (502)
Q Consensus 200 ~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~-~~~--~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~ 271 (502)
+-... ....++.|+..+. ..|.... .. +.+. .++ .++++|.++++ .++....- ..+..+.+.+
T Consensus 139 ~~~~~------~~~Q~f~G~~~r~-~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~--~lvE~T~~s~~~~l~~~~l 209 (370)
T TIGR01789 139 SAHLK------GGFQVFLGREMRL-QEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHD--LLIEDTYYADDPLLDRNAL 209 (370)
T ss_pred Ccccc------ceeeEEEEEEEEE-cCCCCCCccEEEeeeccCCCCceEEEECcCCCCe--EEEEEEeccCCCCCCHHHH
Confidence 52211 1224567777653 2332211 11 1121 222 34557998885 44443211 1244456666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCC---CCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHH
Q 010765 272 ANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSM---PADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRN 348 (502)
Q Consensus 272 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~ 348 (502)
++.+.+++... .....+ .... +....|+... .+.....++|+++|||||+++|.+|+|++.+++||..|++
T Consensus 210 ~~~l~~~~~~~-g~~~~~----i~~~-e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~ 283 (370)
T TIGR01789 210 SQRIDQYARAN-GWQNGT----PVRH-EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAA 283 (370)
T ss_pred HHHHHHHHHHh-CCCceE----EEEe-eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHh
Confidence 66666553211 000000 0111 1234554331 2211224569999999999999999999999999999999
Q ss_pred hcCccCCCCChHHHHHHHHHHHHHcccchhHHHHHH
Q 010765 349 LLKPLHDFNDAASLGRYLESFYTLRKPVASTINTLA 384 (502)
Q Consensus 349 ~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~~~~~~a 384 (502)
.+.. ++.....++..|...|+++.....-+-
T Consensus 284 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (370)
T TIGR01789 284 QPDL-----SSEQLAAFIDSRARRHWSKTGYYRLLN 314 (370)
T ss_pred ccCc-----CccchhhhhhHHHHHHHHHhHHHHHHH
Confidence 8851 112344567888888877766544333
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.90 E-value=3.3e-22 Score=207.14 Aligned_cols=317 Identities=21% Similarity=0.182 Sum_probs=184.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCC---CeEEEEecCCCCCCccc--------------c-----hhhhccccccceEEEEE-
Q 010765 56 DVIIVGAGVAGAALAHTLGKDG---RRVHVIERDVTEPDRIV--------------D-----CVEEIDAQQVLGYALFK- 112 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G---~~v~lvEr~~~~~~r~~--------------~-----~l~~l~~~~~~g~~~~~- 112 (502)
||+|||||++|.++|..|++.+ ++|+|||+...+.-.++ + .+.+.+.....|..+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 7999999999999999999998 99999999866543222 1 12222222222333311
Q ss_pred C--CceeeeeccC---------------------------------------------cC-CCCCCcceeecchHHHHHH
Q 010765 113 D--GKSTRLSYPL---------------------------------------------EK-FHADVSGRSFHNGRFIQRM 144 (502)
Q Consensus 113 ~--g~~~~~~~~~---------------------------------------------~~-~~~~~~g~~i~r~~l~~~L 144 (502)
. +.....++.. .. ......++.++|..|++.|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 0 0000000000 00 0112346899999999999
Q ss_pred HHHHHcCCCeEEEeceEEEEEeeC-CeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhh-cCCCC---CCccceeEE
Q 010765 145 REKAASLPNVRLEQGTVTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL-CKPKV---DVPSCFVGL 219 (502)
Q Consensus 145 ~~~a~~~~~v~i~~~~v~~~~~~~-~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l-~~~~~---~~~~~~~~~ 219 (502)
++.+.+. ||+++.++|+++..++ +.+.+ +..++|++ ++||++|+|+|.+|.+.+.. ..+.. .......++
T Consensus 161 ~~~A~~~-Gv~~~~g~V~~v~~~~~g~i~~--v~~~~g~~--i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~av 235 (454)
T PF04820_consen 161 RRHAEER-GVEVIEGTVVDVELDEDGRITA--VRLDDGRT--IEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRAV 235 (454)
T ss_dssp HHHHHHT-T-EEEET-EEEEEE-TTSEEEE--EEETTSEE--EEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEEE
T ss_pred HHHHhcC-CCEEEeCEEEEEEEcCCCCEEE--EEECCCCE--EEEeEEEECCCccchhhHhhhcCCCccccccccccEEE
Confidence 9999999 8999999988877664 44444 44566764 56999999999999887773 22221 111122333
Q ss_pred EEee-cCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcC
Q 010765 220 VLEN-CQLPFANHGHVILADPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERG 298 (502)
Q Consensus 220 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~ 298 (502)
...- ..-+..........+.||.|.+|+.++... .+.+..+.. ++++..+.+.+.+... ....
T Consensus 236 ~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~---s~~~A~~~l~~~l~~~------------~~~~ 299 (454)
T PF04820_consen 236 AVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI---SDDEAEAELLAYLGGS------------PEAE 299 (454)
T ss_dssp EEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS---HHHHHHHHHHHHHTCH------------CTTS
T ss_pred EEecCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC---CHHHHHHHHHHhcchh------------hhcc
Confidence 3321 111233444555667899999999997655 333332211 2233333333332211 0000
Q ss_pred CeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCccCCCCChHHHHHHHHHHHHHcccchh
Q 010765 299 NIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHDFNDAASLGRYLESFYTLRKPVAS 378 (502)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~p~~~ 378 (502)
. ...+.......+...+|+++|||||.+++|+.++|+.+++..+..|+..|.... .. +.+++.|++..+....
T Consensus 300 ~-~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~----~~--~~~~~~Yn~~~~~~~~ 372 (454)
T PF04820_consen 300 P-RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD----FS--PAALDRYNRRMRREYE 372 (454)
T ss_dssp C-EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT----CC--HHHHHHHHHHHHHHHH
T ss_pred h-hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC----CC--HHHHHHHHHHHHHHHH
Confidence 1 222333333566678899999999999999999999999999999999887531 11 5588899999888888
Q ss_pred HHHHHHHHHHhhhccCChhHHH
Q 010765 379 TINTLAGALYKVFSSSPDQARK 400 (502)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~ 400 (502)
.+.++....|..-...+.++.+
T Consensus 373 ~~~~fi~~hY~~~~r~ds~FW~ 394 (454)
T PF04820_consen 373 RIRDFISLHYQLSRRRDSPFWR 394 (454)
T ss_dssp HHHHHHHHHHHTHHS-SSHHHH
T ss_pred HHHHHHHHHHccccCCCCHHHH
Confidence 8888877777764333334433
No 61
>PLN02463 lycopene beta cyclase
Probab=99.89 E-value=1.7e-20 Score=193.12 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=163.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC-Ccccc----hhhhcccc-----ccceEEEEECCceeeeec
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP-DRIVD----CVEEIDAQ-----QVLGYALFKDGKSTRLSY 121 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~-~r~~~----~l~~l~~~-----~~~g~~~~~~g~~~~~~~ 121 (502)
...+||+||||||+|+++|..|+++|++|+|+|+++... ++... .++.++.. ......++.+...
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~----- 100 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGK----- 100 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCC-----
Confidence 456899999999999999999999999999999975432 22222 23222211 1111122211110
Q ss_pred cCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 122 PLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 122 ~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
......++ ..++|..|.+.|.+++.+. |++++.++|+++.++++. +.+..++|.+ ++||+||+|||.+|++
T Consensus 101 --~~~~~~~y-~~V~R~~L~~~Ll~~~~~~-GV~~~~~~V~~I~~~~~~---~~V~~~dG~~--i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 101 --KKDLDRPY-GRVNRKKLKSKMLERCIAN-GVQFHQAKVKKVVHEESK---SLVVCDDGVK--IQASLVLDATGFSRCL 171 (447)
T ss_pred --CccccCcc-eeEEHHHHHHHHHHHHhhc-CCEEEeeEEEEEEEcCCe---EEEEECCCCE--EEcCEEEECcCCCcCc
Confidence 00011122 3579999999999999876 899987779999887764 3455667764 5699999999999988
Q ss_pred hhhhcCCCCCCccceeEEEEeecCCCCCCceEEE-------Ec--------C---CCcEEEEecCCCeEEEEEEeCC-CC
Q 010765 202 RRSLCKPKVDVPSCFVGLVLENCQLPFANHGHVI-------LA--------D---PSPILFYPISSTEVRCLVDVPG-QK 262 (502)
Q Consensus 202 R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------~---~~~~~~~p~~~~~~~~~~~~~~-~~ 262 (502)
++.-. +.........++.......+......++ .+ + +.+.+++|.++++ +++.... -.
T Consensus 172 ~~~~~-~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~--~~vEeT~l~s 248 (447)
T PLN02463 172 VQYDK-PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNR--IFLEETSLVA 248 (447)
T ss_pred cCCCC-CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCe--EEEEeeeeec
Confidence 65321 1111111233444331111111100000 00 1 3467888999885 3332210 01
Q ss_pred CCCCCchHHHHHHHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHH
Q 010765 263 VPSISNGEMANYLKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSD 342 (502)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~D 342 (502)
.+....+++++.+.+.+. .+.-... .+...+....|+... .+...+|++++||||.+++|.+|.|+..++..
T Consensus 249 ~~~~~~~~lk~~L~~~l~-~~Gi~~~-----~i~~~E~~~IPmg~~--~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~ 320 (447)
T PLN02463 249 RPGLPMDDIQERMVARLR-HLGIKVK-----SVEEDEKCVIPMGGP--LPVIPQRVLGIGGTAGMVHPSTGYMVARTLAA 320 (447)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCCcc-----eeeeeeeeEeeCCCC--CCCCCCCEEEecchhcCcCCCccccHHHHHHH
Confidence 122334566666655443 1110111 011112233455332 22336799999999999999999999999999
Q ss_pred HHHHHHhcCcc
Q 010765 343 IVVLRNLLKPL 353 (502)
Q Consensus 343 a~~La~~L~~~ 353 (502)
+..+|+.+++.
T Consensus 321 ~~~~a~~~~~~ 331 (447)
T PLN02463 321 APIVADAIVEY 331 (447)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.87 E-value=2e-19 Score=182.82 Aligned_cols=269 Identities=22% Similarity=0.241 Sum_probs=169.9
Q ss_pred cEEEECCCHHHHHHHHHH--hhCCCeEEEEecCCCC---CCcccch-------hhhccccccceEEEEECCceeeeeccC
Q 010765 56 DVIIVGAGVAGAALAHTL--GKDGRRVHVIERDVTE---PDRIVDC-------VEEIDAQQVLGYALFKDGKSTRLSYPL 123 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~L--a~~G~~v~lvEr~~~~---~~r~~~~-------l~~l~~~~~~g~~~~~~g~~~~~~~~~ 123 (502)
||+||||||||+++|..| ++.|.+|+|||+++.. .++++.. ++.+......+..+..++......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~--- 77 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILI--- 77 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEc---
Confidence 899999999999999999 8889999999998664 3344311 223322333444444433321111
Q ss_pred cCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhh
Q 010765 124 EKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 124 ~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
......+++..|.+.|.+.+. .+++.+..++|+++..+++ ++.+..++|++ ++|++||+|+|..|...+
T Consensus 78 -----~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~---~~~v~~~~g~~--i~a~~VvDa~g~~~~~~~ 146 (374)
T PF05834_consen 78 -----DYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGD---GVLVVLADGRT--IRARVVVDARGPSSPKAR 146 (374)
T ss_pred -----ccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCc---eEEEEECCCCE--EEeeEEEECCCccccccc
Confidence 112357999999999999999 4477777777999988777 34456778875 559999999997776222
Q ss_pred hhcCCCCCCccceeEEEEeecCCC--CCCceE---EEEc----CCCcEEEEecCCCeEEEEEEeCCCCCCCCCchHHHHH
Q 010765 204 SLCKPKVDVPSCFVGLVLENCQLP--FANHGH---VILA----DPSPILFYPISSTEVRCLVDVPGQKVPSISNGEMANY 274 (502)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (502)
.. ...++.|+.+. .+.| +++... +... ...+++++|.++++..+-.+.-.. .+..+.+++++.
T Consensus 147 ~~------~~Q~f~G~~v~-~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~-~~~~~~~~~~~~ 218 (374)
T PF05834_consen 147 PL------GLQHFYGWEVE-TDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP-RPALPEEELKAR 218 (374)
T ss_pred cc------ccceeEEEEEe-ccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC-CCCCCHHHHHHH
Confidence 21 12456777665 2222 111111 1121 234668889998853332222211 223445566666
Q ss_pred HHHHcCCCCChhhHHHHHHHHhcCCeeeccCCCCCCCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCc
Q 010765 275 LKAMVAPQVPPELHEAFVSAVERGNIRTMPNRSMPADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKP 352 (502)
Q Consensus 275 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~ 352 (502)
+.+++.. ..-... .+...+.-..|+......+...++++.+|+|++.++|.+|.++..+++.+..+|..|..
T Consensus 219 l~~~l~~-~g~~~~-----~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 219 LRRYLER-LGIDDY-----EILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred HHHHHHH-cCCCce-----eEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 6655432 111111 01111233466644444444567799999999999999999999999999999999875
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.53 E-value=1.1e-13 Score=132.68 Aligned_cols=148 Identities=19% Similarity=0.221 Sum_probs=98.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc--c-hhhhccccccceEEEEECCceeeeeccCcCCC
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV--D-CVEEIDAQQVLGYALFKDGKSTRLSYPLEKFH 127 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~--~-~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 127 (502)
+..++||+||||||+|+++|+.|++.|++|+|+||.......+. + .+..+.... ....+. ..+..+....
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~-~~~~~l-----~~~gv~~~~~- 94 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQE-EADEIL-----DEFGIRYKEV- 94 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchH-HHHHHH-----HHCCCCceee-
Confidence 35578999999999999999999999999999999876543221 0 011000000 000000 0000000000
Q ss_pred CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeC----CC---cEEEEecCEEEEecCCC
Q 010765 128 ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG-TIKGVQYKTK----DG---QELRAYAPLTIVCDGCF 198 (502)
Q Consensus 128 ~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~-~v~~v~~~~~----~G---~~~~v~ad~vI~ADG~~ 198 (502)
....+.+++..+...|.+.+.+. |++++.++ ++++..+++ ++.+|.+... +| +..+++|++||+|+|.+
T Consensus 95 -~~g~~~vd~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 95 -EDGLYVADSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred -cCcceeccHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 11124678889999999999987 89999997 999887665 7778776421 12 34568899999999999
Q ss_pred chhhhhhcC
Q 010765 199 SNLRRSLCK 207 (502)
Q Consensus 199 S~vR~~l~~ 207 (502)
|.+.+.+..
T Consensus 173 a~v~~~l~~ 181 (257)
T PRK04176 173 AEVVSVLAR 181 (257)
T ss_pred cHHHHHHHH
Confidence 999988753
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.49 E-value=2.8e-13 Score=129.49 Aligned_cols=144 Identities=23% Similarity=0.278 Sum_probs=97.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc--c-hhhhccccccceEEEEECCce--eeeeccCcCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV--D-CVEEIDAQQVLGYALFKDGKS--TRLSYPLEKF 126 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~--~-~l~~l~~~~~~g~~~~~~g~~--~~~~~~~~~~ 126 (502)
..++||+||||||+||++|+.|+++|.+|+|+||+......++ + .+..+.. ...... ..+..+...
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~--------~~~~~~~l~~~gi~~~~- 89 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVV--------EKPAHEILDEFGIRYED- 89 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccc--------cchHHHHHHHCCCCeee-
Confidence 4578999999999999999999999999999999976543322 0 0000000 000000 000001000
Q ss_pred CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC--eEEEEEEEeC----CC---cEEEEecCEEEEecC
Q 010765 127 HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG--TIKGVQYKTK----DG---QELRAYAPLTIVCDG 196 (502)
Q Consensus 127 ~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~--~v~~v~~~~~----~G---~~~~v~ad~vI~ADG 196 (502)
.....+..++..+.+.|.+++.+. ++++++++ ++++..+++ ++.||.+... +| +..+++|++||+|+|
T Consensus 90 -~~~g~~~~~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG 167 (254)
T TIGR00292 90 -EGDGYVVADSAEFISTLASKALQA-GAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATG 167 (254)
T ss_pred -ccCceEEeeHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeec
Confidence 001123457888999999999988 79999998 999987766 5778776321 12 356788999999999
Q ss_pred CCchhhhhhc
Q 010765 197 CFSNLRRSLC 206 (502)
Q Consensus 197 ~~S~vR~~l~ 206 (502)
..|.+.+.+.
T Consensus 168 ~~a~v~~~l~ 177 (254)
T TIGR00292 168 HDAEIVAVCA 177 (254)
T ss_pred CCchHHHHHH
Confidence 9999887764
No 65
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.48 E-value=5.1e-12 Score=122.64 Aligned_cols=285 Identities=23% Similarity=0.329 Sum_probs=164.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC------CCeEEEEecCCCCCCccc-------chhhhcccc----ccc--------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD------GRRVHVIERDVTEPDRIV-------DCVEEIDAQ----QVL-------- 106 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~------G~~v~lvEr~~~~~~r~~-------~~l~~l~~~----~~~-------- 106 (502)
.+.+||+||||||+||++|+.|.|. .++|+|+|+.......+. ..++++... ...
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d 153 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSD 153 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccc
Confidence 5679999999999999999999773 579999999977765543 344444322 110
Q ss_pred eEEEEECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEe----CC
Q 010765 107 GYALFKDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLE-ENGTIKGVQYKT----KD 180 (502)
Q Consensus 107 g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~-~~~~v~~v~~~~----~~ 180 (502)
.+.+... ...+..|......+...+.++-+.+.++|-+.|++. ||+++.+- ..++.. +++.|.|+...+ ++
T Consensus 154 ~~~fLt~--~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~-GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~ 230 (621)
T KOG2415|consen 154 KFKFLTG--KGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEEL-GVEIYPGFAASEVLYDEDGSVKGIATNDVGISKD 230 (621)
T ss_pred ceeeecc--CceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhh-CceeccccchhheeEcCCCcEeeEeeccccccCC
Confidence 1111111 112222221111122347888899999999999999 89999987 666654 467788776543 33
Q ss_pred CcE-------EEEecCEEEEecCCCchhhhhhcCCC---CCCccceeEEEEe---ecCCCCCCceEEE--E----cCC--
Q 010765 181 GQE-------LRAYAPLTIVCDGCFSNLRRSLCKPK---VDVPSCFVGLVLE---NCQLPFANHGHVI--L----ADP-- 239 (502)
Q Consensus 181 G~~-------~~v~ad~vI~ADG~~S~vR~~l~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~--~----~~~-- 239 (502)
|.. .++.|+..|-|.|++..+-+++.... ........++-++ ..+-.....+.+. + .+.
T Consensus 231 G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~tY 310 (621)
T KOG2415|consen 231 GAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDNDTY 310 (621)
T ss_pred CCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcccCCcc
Confidence 432 34679999999999999888874322 1112222333222 1111111112111 1 111
Q ss_pred CcEEEEecCCCeEEEEEEeC-CCCCCCCCchHHHHHHHHHcCCCCChhhHHHHH---------HHHhcCCeeeccCCCCC
Q 010765 240 SPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAMVAPQVPPELHEAFV---------SAVERGNIRTMPNRSMP 309 (502)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~ 309 (502)
+-.++|.++++...+.+.+. ....|-+++-.--+.++ ..| .+.+.+. +++.++.... .+
T Consensus 311 GGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K--~hP----~i~~vleGgk~i~YgARaLNEGGfQs-----iP 379 (621)
T KOG2415|consen 311 GGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMK--HHP----SISKVLEGGKRIAYGARALNEGGFQS-----IP 379 (621)
T ss_pred CceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhh--cCc----chhhhhcCcceeeehhhhhccCCccc-----Cc
Confidence 33567888887655554432 12233333322222222 122 2332221 1122222111 11
Q ss_pred CCCCCCCCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCc
Q 010765 310 ADPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKP 352 (502)
Q Consensus 310 ~~~~~~~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~ 352 (502)
...-.+=+|||-+|++++----.|..+||.++...|+.+-+
T Consensus 380 --kl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ 420 (621)
T KOG2415|consen 380 --KLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFE 420 (621)
T ss_pred --ccccCCceEeecccccccccccccchhhhhcchhHHHHHHH
Confidence 33345667899999999998999999999999999987754
No 66
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.2e-12 Score=114.43 Aligned_cols=132 Identities=23% Similarity=0.318 Sum_probs=96.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc----------------chhhhccccccceEEEEECCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV----------------DCVEEIDAQQVLGYALFKDGK 115 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~----------------~~l~~l~~~~~~g~~~~~~g~ 115 (502)
..+.||+||||||+||++|+.|++.|.+|+|+||+......++ ++|+++..
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI------------- 94 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGI------------- 94 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCC-------------
Confidence 3467999999999999999999999999999999988766544 22222211
Q ss_pred eeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEeC----CC---cEEEE
Q 010765 116 STRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG-TIKGVQYKTK----DG---QELRA 186 (502)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~-~v~~v~~~~~----~G---~~~~v 186 (502)
+|. + ....-+..+-..+...|..++.+. |+++..++ |+++...++ +|.||.+.-. .+ +..++
T Consensus 95 ----~ye--~--~e~g~~v~ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i 165 (262)
T COG1635 95 ----RYE--E--EEDGYYVADSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTI 165 (262)
T ss_pred ----cce--e--cCCceEEecHHHHHHHHHHHHHhc-CceeeecceEEEEEEecCCceEEEEEecchhhhcccccCccee
Confidence 111 0 011124556677888999998888 69999998 999987777 7888876421 11 24567
Q ss_pred ecCEEEEecCCCchhhhhh
Q 010765 187 YAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 187 ~ad~vI~ADG~~S~vR~~l 205 (502)
+|++||+|+|-...|-+.+
T Consensus 166 ~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 166 RAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred eEEEEEeCCCCchHHHHHH
Confidence 8999999999887775555
No 67
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.40 E-value=1.2e-12 Score=118.10 Aligned_cols=142 Identities=25% Similarity=0.275 Sum_probs=87.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc---chhhhccccccceEEEEECCcee--eeeccCcCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV---DCVEEIDAQQVLGYALFKDGKST--RLSYPLEKF 126 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~---~~l~~l~~~~~~g~~~~~~g~~~--~~~~~~~~~ 126 (502)
..++||+||||||+||++|+.|++.|++|+|+||+..+....+ -.+..+-.+ ...... .+..+..+
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq--------~~a~~iL~elgi~y~~- 85 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQ--------EEADEILDELGIPYEE- 85 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEE--------TTTHHHHHHHT---EE-
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhh--------hhHHHHHHhCCceeEE-
Confidence 3468999999999999999999999999999999977665433 111111100 000000 00000001
Q ss_pred CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeC----CC---cEEEEecCEEEEecCC
Q 010765 127 HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTK----DG---QELRAYAPLTIVCDGC 197 (502)
Q Consensus 127 ~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~~----~G---~~~~v~ad~vI~ADG~ 197 (502)
.....+..+-..+...|..++.+ +|+++...+ |+++...+ ++|.||.+... .| ++.+++|++||+|+|.
T Consensus 86 -~~~g~~v~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 86 -YGDGYYVADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp --SSEEEES-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred -eCCeEEEEcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 11122456777889999988888 499999998 99988766 89999887531 22 3567889999999999
Q ss_pred Cchhhhh
Q 010765 198 FSNLRRS 204 (502)
Q Consensus 198 ~S~vR~~ 204 (502)
.+.+-+.
T Consensus 164 da~v~~~ 170 (230)
T PF01946_consen 164 DAEVVRV 170 (230)
T ss_dssp SSSSTSH
T ss_pred chHHHHH
Confidence 8876443
No 68
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.35 E-value=6.3e-11 Score=129.49 Aligned_cols=173 Identities=21% Similarity=0.227 Sum_probs=101.1
Q ss_pred EeccCCCCCcccccccccccccc---cccCCCC--CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC----C
Q 010765 21 RRNDSKKPRKVSTTYKTQNDVFR---SSVNAGK--NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP----D 91 (502)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~----~ 91 (502)
+++.+..++|+.|..+....... ..++... ...+.||+|||||++|+++|+.|+++|++|+|+||+..+. .
T Consensus 222 v~~~~~~g~kr~~~~~~~~~~~~~~~~~~w~~~~~~~~~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg 301 (662)
T PRK01747 222 VRKVKGFGRKREMLVGELEQTLPAPLAAPWFARPGSPKARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASG 301 (662)
T ss_pred eeecCCCchhhhhhhehhccccCCCCCCCcccCCCcCCCCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCc
Confidence 56777778888887775421111 1221111 1124799999999999999999999999999999984321 1
Q ss_pred ccc--------------------------chhhhccc---c---ccceEEEE-ECCcee-------eeec----------
Q 010765 92 RIV--------------------------DCVEEIDA---Q---QVLGYALF-KDGKST-------RLSY---------- 121 (502)
Q Consensus 92 r~~--------------------------~~l~~l~~---~---~~~g~~~~-~~g~~~-------~~~~---------- 121 (502)
+.. +.++.+.. . ...|.... .+.+.. ....
T Consensus 302 ~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~ 381 (662)
T PRK01747 302 NRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDA 381 (662)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCH
Confidence 100 11222210 0 00122111 111000 0000
Q ss_pred -------cCcCCC---CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCE
Q 010765 122 -------PLEKFH---ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPL 190 (502)
Q Consensus 122 -------~~~~~~---~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~ 190 (502)
+..... ..+.+..++...+...|.+.+.+ |+++++++ |+++..+++.+ .+.+.+|.. ++||.
T Consensus 382 ~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~--Gv~i~~~~~V~~i~~~~~~~---~v~t~~g~~--~~ad~ 454 (662)
T PRK01747 382 EEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ--QLTIHFGHEVARLEREDDGW---QLDFAGGTL--ASAPV 454 (662)
T ss_pred HHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc--CcEEEeCCEeeEEEEeCCEE---EEEECCCcE--EECCE
Confidence 000000 01112245667899999998877 79999887 99998777643 355666654 35999
Q ss_pred EEEecCCCch
Q 010765 191 TIVCDGCFSN 200 (502)
Q Consensus 191 vI~ADG~~S~ 200 (502)
||.|+|.+|.
T Consensus 455 VV~A~G~~s~ 464 (662)
T PRK01747 455 VVLANGHDAA 464 (662)
T ss_pred EEECCCCCcc
Confidence 9999999985
No 69
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.33 E-value=7.3e-11 Score=124.81 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=93.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc------------------------chhhhcccc---
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------------------------DCVEEIDAQ--- 103 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------------------------~~l~~l~~~--- 103 (502)
.+.++||||||+|.+|+++|+.+++.|.+|+||||.+.....+. +.++++...
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 137 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 137 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence 35689999999999999999999999999999999865432211 001110000
Q ss_pred ---------------------ccceEEEEECCceeeeeccCcC-CC--CCCcceeecchHHHHHHHHHHHcCCCeEEEec
Q 010765 104 ---------------------QVLGYALFKDGKSTRLSYPLEK-FH--ADVSGRSFHNGRFIQRMREKAASLPNVRLEQG 159 (502)
Q Consensus 104 ---------------------~~~g~~~~~~g~~~~~~~~~~~-~~--~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~ 159 (502)
...|+.+.. ...+... .. ..+......-..+...|.+.+++. +++++++
T Consensus 138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~------~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~-gv~i~~~ 210 (506)
T PRK06481 138 TNDKALLRYFVDNSASAIDWLDSMGIKLDN------LTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVN 210 (506)
T ss_pred CCCHHHHHHHHhccHHHHHHHHHcCceEee------cccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHc-CCeEEeC
Confidence 000111000 0000000 00 000000011235777888888887 7999999
Q ss_pred e-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhh
Q 010765 160 T-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 160 ~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l 205 (502)
+ ++++..++++|.+|.+...+|+..+++++.||.|+|.++.-.+.+
T Consensus 211 t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 211 ADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred CeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 8 999988778888998877666666788999999999988654433
No 70
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.31 E-value=1.5e-11 Score=129.14 Aligned_cols=140 Identities=27% Similarity=0.376 Sum_probs=91.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc-cc----------chhhhccccc-cceEEEEECCceeeee
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR-IV----------DCVEEIDAQQ-VLGYALFKDGKSTRLS 120 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r-~~----------~~l~~l~~~~-~~g~~~~~~g~~~~~~ 120 (502)
.++||+|||||+||+.+|+.+++.|.+|+|+|++....+. .| .+.+++++.. ..+. +... ..+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~-~~d~---~giq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGK-AIDK---TGIQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHH-HHhh---ccCc
Confidence 4699999999999999999999999999999998422111 11 2233332210 0000 0000 0001
Q ss_pred ccCcCCCCCC----cceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecC
Q 010765 121 YPLEKFHADV----SGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 196 (502)
Q Consensus 121 ~~~~~~~~~~----~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG 196 (502)
+........+ ....+++..+...|.+.+.+.+++++..++|+++..+++++.+|.. .+|.. +.|+.||.|+|
T Consensus 79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t--~dG~~--I~Ak~VIlATG 154 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVT--QDGLE--FRAKAVVLTTG 154 (618)
T ss_pred eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEE--CCCCE--EECCEEEEeeC
Confidence 1100000001 1125788889999999999888999988889999888888777764 55754 66999999999
Q ss_pred CCch
Q 010765 197 CFSN 200 (502)
Q Consensus 197 ~~S~ 200 (502)
.++.
T Consensus 155 TFL~ 158 (618)
T PRK05192 155 TFLR 158 (618)
T ss_pred cchh
Confidence 8764
No 71
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.30 E-value=5e-10 Score=118.48 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch-hhh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN-LRR 203 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~-vR~ 203 (502)
.++..++...|...+++. |++++.++ |+++..+++. .+|.+.+..|++.+++|++||.|+|.+|. +.+
T Consensus 151 ~vd~~rl~~~l~~~a~~~-Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 151 WVDDARLVVLNALDAAER-GATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred eecHHHHHHHHHHHHHHC-CCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 356678888888888888 78998887 8998876554 34666555577778899999999999984 444
No 72
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.30 E-value=5e-10 Score=120.87 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=58.0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEe-CCCcEEEEecCEEEEecCCCch-hhhhhcC
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE--NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSLCK 207 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~--~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~-vR~~l~~ 207 (502)
.++..++...|.+.+++. |++++.++ |+++..+ ++++.+|++.+ .+|+.++++||.||.|.|++|. +++.++.
T Consensus 228 ~vdp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~ 305 (627)
T PLN02464 228 QMNDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADG 305 (627)
T ss_pred EEcHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccC
Confidence 457778999999999998 79999886 9998876 46777888765 3566667889999999999985 6666653
No 73
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.30 E-value=2.1e-11 Score=123.01 Aligned_cols=64 Identities=31% Similarity=0.495 Sum_probs=50.2
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+..++-..+.+.|.+.+++. |++++.++ |+++..+++++.+|. +++|+ ++||.||.|.|.+|.-
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~gv~--~~~g~---i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRA-GVEIRTGTEVTSIDVDGGRVTGVR--TSDGE---IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHT-T-EEEESEEEEEEEEETTEEEEEE--ETTEE---EEECEEEE--GGGHHH
T ss_pred cccccccchhhhhHHHHHHh-hhhccccccccchhhccccccccc--ccccc---cccceeEeccccccee
Confidence 45678889999999999998 89999996 999999999765554 56664 5599999999998754
No 74
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28 E-value=4.2e-11 Score=117.30 Aligned_cols=142 Identities=23% Similarity=0.316 Sum_probs=89.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc------------chhhhcccc-ccce------EEEEEC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------------DCVEEIDAQ-QVLG------YALFKD 113 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------------~~l~~l~~~-~~~g------~~~~~~ 113 (502)
+.+||+|||||||||.||..++++|.+|+|+|+.+....++. +..+++... +-.+ +.-+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 468999999999999999999999999999999987654432 112221111 0000 000000
Q ss_pred Cceee-eeccCcCCCCCCcceeec----chHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEe
Q 010765 114 GKSTR-LSYPLEKFHADVSGRSFH----NGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAY 187 (502)
Q Consensus 114 g~~~~-~~~~~~~~~~~~~g~~i~----r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ 187 (502)
..... +.-.--.......|+.+. -..+.+.|..++++. ||+++..+ |.++..++. +..+.+++|+ +++
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~~~~---~f~l~t~~g~--~i~ 155 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEAL-GVTIRTRSRVSSVEKDDS---GFRLDTSSGE--TVK 155 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHc-CcEEEecceEEeEEecCc---eEEEEcCCCC--EEE
Confidence 00000 000000000111233332 246888899999998 89999998 999988774 4556778887 456
Q ss_pred cCEEEEecCCCch
Q 010765 188 APLTIVCDGCFSN 200 (502)
Q Consensus 188 ad~vI~ADG~~S~ 200 (502)
||-+|.|.|..|.
T Consensus 156 ~d~lilAtGG~S~ 168 (408)
T COG2081 156 CDSLILATGGKSW 168 (408)
T ss_pred ccEEEEecCCcCC
Confidence 9999999998883
No 75
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.27 E-value=1.2e-09 Score=111.71 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=52.3
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC-chhhhhhcCCCC
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF-SNLRRSLCKPKV 210 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~-S~vR~~l~~~~~ 210 (502)
..++...+.+.|.+.+++. |+++++++ |+++..+++.+ .+...+| ++.+|.||.|.|.+ |.+++.+++..+
T Consensus 140 g~i~p~~~~~~l~~~~~~~-g~~~~~~~~V~~i~~~~~~~---~v~~~~~---~i~a~~vV~aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAH-GATVRDGTKVVEIEPTELLV---TVKTTKG---SYQANKLVVTAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred cEEcHHHHHHHHHHHHHHc-CCEEECCCeEEEEEecCCeE---EEEeCCC---EEEeCEEEEecCcchHHHhhhcccCCC
Confidence 3566778889999888887 89999987 99998776643 3444444 35699988888876 678887775433
No 76
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.26 E-value=4.5e-10 Score=115.97 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=62.6
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecCEE-EEecCCCchhhhhhcCCCC
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAPLT-IVCDGCFSNLRRSLCKPKV 210 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~~~G~~~~v~ad~v-I~ADG~~S~vR~~l~~~~~ 210 (502)
.++...+...|.+.+.+. |+++++++ |+++... ++.+.+| .+.+|. +.++.| |+|+|..|.+++.++...+
T Consensus 179 ~v~p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~~~v--~t~~g~---i~a~~vVvaagg~~~~l~~~~g~~~~ 252 (407)
T TIGR01373 179 TARHDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGGRVIGV--ETTRGF---IGAKKVGVAVAGHSSVVAAMAGFRLP 252 (407)
T ss_pred cCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEEE--EeCCce---EECCEEEECCChhhHHHHHHcCCCCC
Confidence 345566777888888887 89999986 9998754 4544333 445563 558855 6667766788887766533
Q ss_pred CCccceeEEEEeecCCCCCCceEEEEcCCCcEEEEecCCCeE
Q 010765 211 DVPSCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEV 252 (502)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (502)
..+.....+.. . ..+.. ...++..++...++.|..++..
T Consensus 253 ~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~y~~p~~~g~~ 291 (407)
T TIGR01373 253 IESHPLQALVS-E-PLKPI-IDTVVMSNAVHFYVSQSDKGEL 291 (407)
T ss_pred cCcccceEEEe-c-CCCCC-cCCeEEeCCCceEEEEcCCceE
Confidence 32322222222 1 11111 1112333444567778766643
No 77
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.25 E-value=4.3e-12 Score=131.37 Aligned_cols=142 Identities=25% Similarity=0.261 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-ch---hhh----------ccccccceEEEEECCceeeeec
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-DC---VEE----------IDAQQVLGYALFKDGKSTRLSY 121 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-~~---l~~----------l~~~~~~g~~~~~~g~~~~~~~ 121 (502)
|||||||||+|++||+.+++.|.+|+||||......... +. +.. +..+-.....- .+.. ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~--~~~~---~~ 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRA--RGGY---PQ 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhh--hccc---cc
Confidence 899999999999999999999999999999976543221 00 000 00000000000 0000 00
Q ss_pred cCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 122 PLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 122 ~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
+ ..........+++..+...|.+.+.+. |+++++++ ++++..+++++.+|.+.+.+| ..+++|+++|+|+|- +.
T Consensus 76 ~--~~~~~~~~~~~~~~~~~~~l~~~l~e~-gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG~-g~ 150 (428)
T PF12831_consen 76 E--DRYGWVSNVPFDPEVFKAVLDEMLAEA-GVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATGD-GD 150 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccccccccccc-cc
Confidence 0 000000013466667777888877664 89999998 999999888999999988777 567899999999994 45
Q ss_pred hhhhhcC
Q 010765 201 LRRSLCK 207 (502)
Q Consensus 201 vR~~l~~ 207 (502)
+-...|.
T Consensus 151 l~~~aG~ 157 (428)
T PF12831_consen 151 LAALAGA 157 (428)
T ss_dssp -------
T ss_pred ccccccc
Confidence 5455554
No 78
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.24 E-value=1.1e-09 Score=113.10 Aligned_cols=195 Identities=19% Similarity=0.263 Sum_probs=116.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc----------------------chhh------hcccc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV----------------------DCVE------EIDAQ 103 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~----------------------~~l~------~l~~~ 103 (502)
+.++||+|||||+.|+-+|..++.+|++|+|+|++....+.+. |++. .+...
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 4789999999999999999999999999999999965433211 2221 11111
Q ss_pred ---ccceE-EEEE------------------CCce------eeeecc----Cc-CCCC-------CCcceeecchHHHHH
Q 010765 104 ---QVLGY-ALFK------------------DGKS------TRLSYP----LE-KFHA-------DVSGRSFHNGRFIQR 143 (502)
Q Consensus 104 ---~~~g~-~~~~------------------~g~~------~~~~~~----~~-~~~~-------~~~g~~i~r~~l~~~ 143 (502)
+...+ .++. .|.. ..+... .. .... ......++-.+|.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 00000 0111 0100 000000 00 0000 011235667788888
Q ss_pred HHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCch-hhhhhcCCCCCC----ccce
Q 010765 144 MREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSLCKPKVDV----PSCF 216 (502)
Q Consensus 144 L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~-vR~~l~~~~~~~----~~~~ 216 (502)
....+.++ |.++...+ |+++..+++ +.||++.+ .+|++++++|+.||.|.|.++- +++..+...... ++.-
T Consensus 170 ~a~~A~~~-Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skG 247 (532)
T COG0578 170 NARDAAEH-GAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKG 247 (532)
T ss_pred HHHHHHhc-ccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccc
Confidence 88888888 67777766 999999888 88999988 5688999999999999999984 466654332111 1111
Q ss_pred eEEEEeecCCCCCCceEEEEcC--CCcEEEEecCCC
Q 010765 217 VGLVLENCQLPFANHGHVILAD--PSPILFYPISST 250 (502)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~ 250 (502)
.-+++.. .++. ....++.+. +...+++|..+.
T Consensus 248 sHlVv~~-~~~~-~~a~~~~~~~d~r~~f~iP~~~~ 281 (532)
T COG0578 248 SHLVVDK-KFPI-NQAVINRCRKDGRIVFAIPYEGK 281 (532)
T ss_pred eEEEecc-cCCC-CceEEeecCCCCceEEEecCCCC
Confidence 1122222 2333 334444443 345677787766
No 79
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.24 E-value=1.2e-09 Score=115.48 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=49.0
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCch
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
++..++...|.+.+.+. |++++.++ |+++..+++.+ +|.+.+ .+|+..+++|+.||.|+|.+|.
T Consensus 152 vd~~rl~~~l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 152 VDDARLVVLNARDAAER-GAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred cCHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 45567777887788887 89999887 99988766543 465554 3566677899999999999984
No 80
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.23 E-value=3.3e-11 Score=120.27 Aligned_cols=133 Identities=33% Similarity=0.462 Sum_probs=85.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC-CCccc----------chhhhcccc--------ccceEEEEECCce
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE-PDRIV----------DCVEEIDAQ--------QVLGYALFKDGKS 116 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~-~~r~~----------~~l~~l~~~--------~~~g~~~~~~g~~ 116 (502)
||+|||||.||+.||+.+++.|.+|+|+..+... ..-.| .+.+++++. ...+..+.....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~- 79 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNR- 79 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEEST-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccc-
Confidence 8999999999999999999999999999433221 11111 223333322 111121111000
Q ss_pred eeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecC
Q 010765 117 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDG 196 (502)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG 196 (502)
. ...........++|..+.+.+++.+++++++++..+.|+++..+++.|.||. +.+|+. +.+|.||.|+|
T Consensus 80 -----s-kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~--~~~g~~--~~a~~vVlaTG 149 (392)
T PF01134_consen 80 -----S-KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVV--TKDGEE--IEADAVVLATG 149 (392)
T ss_dssp -----T-S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEE--ETTSEE--EEECEEEE-TT
T ss_pred -----c-CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEE--eCCCCE--EecCEEEEecc
Confidence 0 0000111124799999999999999999999999999999999999998876 467875 45999999999
Q ss_pred CCc
Q 010765 197 CFS 199 (502)
Q Consensus 197 ~~S 199 (502)
.+.
T Consensus 150 tfl 152 (392)
T PF01134_consen 150 TFL 152 (392)
T ss_dssp TGB
T ss_pred ccc
Confidence 943
No 81
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.23 E-value=4.4e-10 Score=115.42 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=52.7
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc-hhhhhhcCC
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS-NLRRSLCKP 208 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S-~vR~~l~~~ 208 (502)
..++...+.+.|.+.+++. |+++++++ |+++..+++.+ .+.+.+| +++||.||.|+|.+| .+.+.++.+
T Consensus 144 g~vd~~~l~~aL~~~~~~~-Gv~i~~~~~V~~i~~~~~~~---~V~~~~g---~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQAR-GGEIRLGAEVTALDEHANGV---VVRTTQG---EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEecCCeE---EEEECCC---EEEeCEEEECCCcchHHHHHHhCCC
Confidence 4567788999999999887 89999987 88887766643 3445555 356999999999998 466666654
No 82
>PLN02661 Putative thiazole synthesis
Probab=99.20 E-value=2.4e-10 Score=112.44 Aligned_cols=142 Identities=22% Similarity=0.247 Sum_probs=89.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEecCCCCCCccc---chhhhccccccceEEEEECCceeeeeccCcCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTEPDRIV---DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFH 127 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~-G~~v~lvEr~~~~~~r~~---~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 127 (502)
..++||+|||||++|+++|+.|++. |.+|+|+||........+ ..+..+..+.. ...++ +...+.+. ..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~-a~e~L---eElGV~fd--~~- 162 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHLFL---DELGVPYD--EQ- 162 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccH-HHHHH---HHcCCCcc--cC-
Confidence 5678999999999999999999986 899999999866543222 11110000000 00000 00001111 10
Q ss_pred CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe------CCC----cEEEEecCEEEEecC
Q 010765 128 ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT------KDG----QELRAYAPLTIVCDG 196 (502)
Q Consensus 128 ~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~------~~G----~~~~v~ad~vI~ADG 196 (502)
..+....+...+...|.+++.+.++++++.++ ++++..+++++.||.+.. .++ +...++|+.||.|+|
T Consensus 163 -dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 163 -ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred -CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 00111224456677888888777799999998 999998888888887521 111 335678999999999
Q ss_pred CCchh
Q 010765 197 CFSNL 201 (502)
Q Consensus 197 ~~S~v 201 (502)
..+++
T Consensus 242 h~g~~ 246 (357)
T PLN02661 242 HDGPF 246 (357)
T ss_pred CCCcc
Confidence 66543
No 83
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.20 E-value=1.2e-10 Score=118.69 Aligned_cols=138 Identities=29% Similarity=0.400 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------chhh-hccccccceEEE--EECCceee---eec
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------DCVE-EIDAQQVLGYAL--FKDGKSTR---LSY 121 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------~~l~-~l~~~~~~g~~~--~~~g~~~~---~~~ 121 (502)
|||+||||||+||+||+.|++.|.+|+|+||......++. ++-. ..... .+.- ..++.... -.+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~---~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPS---EFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGG---GEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchh---hHhhhcccchHHHHHHHhcC
Confidence 6999999999999999999999999999999977643321 0000 00000 0000 00000000 000
Q ss_pred cCc---------C--CCCCCcceee----cchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEE
Q 010765 122 PLE---------K--FHADVSGRSF----HNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELR 185 (502)
Q Consensus 122 ~~~---------~--~~~~~~g~~i----~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~ 185 (502)
+.. . ......++.+ .-..+...|++.+++. +|++++++ |.++..+++++..|. .+++..
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~~f~v~--~~~~~~-- 152 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRL-GVEIHFNTRVKSIEKKEDGVFGVK--TKNGGE-- 152 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEETTEEEEEE--ETTTEE--
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeecCCceeEee--ccCccc--
Confidence 000 0 0001112222 2246788899999887 89999998 999998888754444 444544
Q ss_pred EecCEEEEecCCCch
Q 010765 186 AYAPLTIVCDGCFSN 200 (502)
Q Consensus 186 v~ad~vI~ADG~~S~ 200 (502)
+.||.||.|.|..|.
T Consensus 153 ~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 153 YEADAVILATGGKSY 167 (409)
T ss_dssp EEESEEEE----SSS
T ss_pred ccCCEEEEecCCCCc
Confidence 569999999998873
No 84
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.19 E-value=8.4e-10 Score=110.83 Aligned_cols=157 Identities=25% Similarity=0.378 Sum_probs=95.2
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------------------------c-hhhhcc
Q 010765 48 AGKNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------------------------D-CVEEID 101 (502)
Q Consensus 48 ~~~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------------------------~-~l~~l~ 101 (502)
..+..+++||+|||||-+|.-+|+-.+-+|.+|.|+|++.+.++... . +.+.+.
T Consensus 61 ~l~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ 140 (680)
T KOG0042|consen 61 ALKSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALN 140 (680)
T ss_pred HhhcCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33446779999999999999999999999999999999976543221 0 001110
Q ss_pred cc------------------cc----------ce---EEEEECCceeeeeccC------cCCC----CCCcce------e
Q 010765 102 AQ------------------QV----------LG---YALFKDGKSTRLSYPL------EKFH----ADVSGR------S 134 (502)
Q Consensus 102 ~~------------------~~----------~g---~~~~~~g~~~~~~~~~------~~~~----~~~~g~------~ 134 (502)
.. ++ .| |.+..+.+.....+-. +.++ .+-.|. .
T Consensus 141 ER~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDGQ 220 (680)
T KOG0042|consen 141 ERANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDGQ 220 (680)
T ss_pred HHHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecCC
Confidence 00 00 01 1111111111100000 0000 111221 2
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEe-CCCcEEEEecCEEEEecCCCch-hhhhh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSL 205 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~-vR~~l 205 (502)
.+-.++.-.+.-.|.++ |+.+.... |.++..++ +++.|+.+++ .+|++++++|+.||.|+|.+|- +|+.-
T Consensus 221 ~nDaRmnl~vAlTA~r~-GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Md 294 (680)
T KOG0042|consen 221 HNDARMNLAVALTAARN-GATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMD 294 (680)
T ss_pred CchHHHHHHHHHHHHhc-chhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhc
Confidence 33456666666666666 66666554 77777654 5588898877 6899999999999999999985 45443
No 85
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.19 E-value=2.8e-10 Score=122.09 Aligned_cols=143 Identities=16% Similarity=0.286 Sum_probs=91.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCCCccc-----------------------------------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIV----------------------------------- 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~~r~~----------------------------------- 94 (502)
+.++||||||||.|||++|+.+++. |.+|+|+||.......+.
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 4568999999999999999999987 479999999854332111
Q ss_pred ---------chhhhccccccceEEEEE--CCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEe
Q 010765 95 ---------DCVEEIDAQQVLGYALFK--DGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQ 158 (502)
Q Consensus 95 ---------~~l~~l~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~ 158 (502)
+.++.+. ..|+.+.. +|... .. ........+.++ -..+...|.+.+.+.++++++.
T Consensus 82 v~~~~~~s~~~i~~L~---~~Gv~f~~~~~g~~~-~~----~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~ 153 (582)
T PRK09231 82 VEYFVHHCPTEMTQLE---QWGCPWSRKPDGSVN-VR----RFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFD 153 (582)
T ss_pred HHHHHHHHHHHHHHHH---HcCCCcccCCCCcee-ee----ccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEe
Confidence 0001100 01121111 01000 00 000000001111 1357788888888777899998
Q ss_pred ce-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchhh
Q 010765 159 GT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 159 ~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
++ ++++..+++.+.||.+.+ .+|+...++|+.||.|||..|.+-
T Consensus 154 ~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 154 EHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred CeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 88 999998888898887644 677767789999999999999763
No 86
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=4.8e-10 Score=120.54 Aligned_cols=149 Identities=23% Similarity=0.266 Sum_probs=92.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCC---CeEEEEecCCCCCCccc-------chhh-----hccc------------
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDG---RRVHVIERDVTEPDRIV-------DCVE-----EIDA------------ 102 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G---~~v~lvEr~~~~~~r~~-------~~l~-----~l~~------------ 102 (502)
|+..++||+|||||+|||++|+.+++.| .+|+|+||.......+. ..+. ..+.
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~ 80 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFL 80 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhccc
Confidence 3456789999999999999999999998 89999999864322111 0000 0000
Q ss_pred -------------------cccceEEEEE--CCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEE
Q 010765 103 -------------------QQVLGYALFK--DGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRL 156 (502)
Q Consensus 103 -------------------~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i 156 (502)
....|+.+.. +|+.....+ ......+.++ -..+...|.+.+.+.+++++
T Consensus 81 ~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~-----~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i 155 (577)
T PRK06069 81 ADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPF-----GGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHF 155 (577)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeec-----CCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEE
Confidence 0001222211 111000000 0000001111 12477788888776558999
Q ss_pred Eece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchhhh
Q 010765 157 EQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 157 ~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
++++ ++++..+++.+.||.+.+ .+|+...+.|+.||.|+|..+.+..
T Consensus 156 ~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 156 YDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred EECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 9998 999988788888887654 5676667889999999999986543
No 87
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.17 E-value=3.4e-10 Score=117.23 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCch
Q 010765 137 NGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 137 r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
-..+...|.+.+++. ++++++++ ++++..++++|+||.+.+ .+|+.++++|+-||.|+|.++.
T Consensus 140 g~~~~~~l~~~~~~~-gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEA-GVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhc-CeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456888999999998 69999998 999999999999999984 6788888999999999999996
No 88
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.17 E-value=4.7e-10 Score=118.26 Aligned_cols=145 Identities=26% Similarity=0.361 Sum_probs=90.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------------ch----hhhcccc-------------
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------------DC----VEEIDAQ------------- 103 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------------~~----l~~l~~~------------- 103 (502)
++||||||+|+|||++|+.+++.|. |+|+||.+.....+. +. ++.+...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 5799999999999999999999998 999999854322110 00 0000000
Q ss_pred -----------ccceEEEEECCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEece-EEEEEe
Q 010765 104 -----------QVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQGT-VTSLLE 166 (502)
Q Consensus 104 -----------~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~ 166 (502)
...|+.+..... .. +...........+.++ -..+...|.+.+++.+++++++++ ++++..
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~-g~--~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~ 157 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQ-GS--YALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLI 157 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCC-CC--ccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeec
Confidence 001111111000 00 0000000011112222 146888899988886689999998 999987
Q ss_pred eCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhh
Q 010765 167 ENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 167 ~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
+++.+.+|.+.+. +....++|+.||.|+|.+|.+..
T Consensus 158 ~~g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 158 ETGRVVGVWVWNR-ETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred cCCEEEEEEEEEC-CcEEEEEcCEEEECCCcccCCCC
Confidence 7788888877655 44456789999999999998654
No 89
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.16 E-value=5.4e-09 Score=106.69 Aligned_cols=60 Identities=20% Similarity=0.163 Sum_probs=45.4
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.++...+...+.+.+.+. |++++.++ |+++..+++. +.+.+++| ++++|.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~---~~v~~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREA-GAELLFNEPVTAIEADGDG---VTVTTADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHC-CCEEECCCEEEEEEeeCCe---EEEEeCCC---EEEeeEEEEecCcchh
Confidence 455567777777777776 89999887 9999887663 44556666 3569999999999864
No 90
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.16 E-value=6.2e-10 Score=119.18 Aligned_cols=141 Identities=18% Similarity=0.275 Sum_probs=92.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCCCccc------------------------------------
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIV------------------------------------ 94 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~~r~~------------------------------------ 94 (502)
.++||+|||||+|||++|+.+++. |.+|+|+||.......+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 357999999999999999999987 589999999855332211
Q ss_pred --------chhhhccccccceEEEEE--CCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEec
Q 010765 95 --------DCVEEIDAQQVLGYALFK--DGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQG 159 (502)
Q Consensus 95 --------~~l~~l~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~~ 159 (502)
+.++.+. ..|+.+.. +|+..... .......+.++ -..+...|.+.+.+.++++++.+
T Consensus 82 ~~l~~~s~~~i~~L~---~~Gv~f~~~~~g~~~~~~-----~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~ 153 (580)
T TIGR01176 82 EYFVAEAPKEMVQLE---HWGCPWSRKPDGRVNVRR-----FGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDE 153 (580)
T ss_pred HHHHHHhHHHHHHHH---HcCCccEecCCCceeeec-----cCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeC
Confidence 0011110 11222211 11100000 00000001111 13578888888877778999988
Q ss_pred e-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 160 T-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 160 ~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+ ++++..+++++.||.+.+ .+|+...+.|+.||.|||..|.+
T Consensus 154 ~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 154 WFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred eEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 8 999998888999988654 57877778999999999999965
No 91
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.16 E-value=5.3e-10 Score=120.17 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchhhh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
.+...|.+.+++. |+++++++ ++++..+++++.||.+.+ .+|+...+.|+.||.|+|.+|.+..
T Consensus 130 ~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKL-GVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHc-CCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 4677888888877 89999998 999988888898988755 5677667889999999999997654
No 92
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.14 E-value=9.5e-10 Score=117.30 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=97.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC---ccc------------------ch------hhhcccc-
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD---RIV------------------DC------VEEIDAQ- 103 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~---r~~------------------~~------l~~l~~~- 103 (502)
..++||+|||||++|+++|+.|+++|++|+|+||+..... +.. ++ +..+...
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~ 83 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHC 83 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHh
Confidence 4468999999999999999999999999999999753321 111 11 1111110
Q ss_pred --ccceEEEEECCce-e----------eeeccC------------cCCCCCC------cceeecchHHHHHHHHHHHcCC
Q 010765 104 --QVLGYALFKDGKS-T----------RLSYPL------------EKFHADV------SGRSFHNGRFIQRMREKAASLP 152 (502)
Q Consensus 104 --~~~g~~~~~~g~~-~----------~~~~~~------------~~~~~~~------~g~~i~r~~l~~~L~~~a~~~~ 152 (502)
...++.+..+... . ....+. ....... ....++..++...+...+.++
T Consensus 84 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~- 162 (546)
T PRK11101 84 VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEH- 162 (546)
T ss_pred hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhC-
Confidence 0111111111000 0 000000 0000000 113567778888888888888
Q ss_pred CeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCch-hhhhhcC
Q 010765 153 NVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSLCK 207 (502)
Q Consensus 153 ~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~-vR~~l~~ 207 (502)
|+++++++ |+++..+++++.+|++.+ .+|+..+++|+.||.|.|.+|. +.+..+.
T Consensus 163 Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 163 GAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL 220 (546)
T ss_pred CCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC
Confidence 89998887 999988888888888765 4565567889999999999984 4444443
No 93
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.14 E-value=6.4e-10 Score=119.03 Aligned_cols=147 Identities=16% Similarity=0.243 Sum_probs=91.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc----ch---h----------hhcccc----------
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV----DC---V----------EEIDAQ---------- 103 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~----~~---l----------~~l~~~---------- 103 (502)
++.++||||||+|.|||++|+.+++.|.+|+|+||.+.....+. .. + +.....
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d 81 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVD 81 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCC
Confidence 34678999999999999999999999999999999854322111 00 0 000000
Q ss_pred ------------------ccceEEEEECCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEece
Q 010765 104 ------------------QVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQGT 160 (502)
Q Consensus 104 ------------------~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~~~ 160 (502)
...|..+...... .+... ........+..+ -..+...|.+.+.+. ++++++++
T Consensus 82 ~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g-~~~~~--~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~ 157 (566)
T PRK06452 82 QDAAELLSNKSGEIVMLLERWGALFNRQPDG-RVAVR--YFGGQTYPRTRFVGDKTGMALLHTLFERTSGL-NVDFYNEW 157 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccCCCC-cEecc--CCcCccCCeeEecCCCCHHHHHHHHHHHHHhC-CCEEEeCc
Confidence 0011111000000 00000 000000111111 124677888888776 89999998
Q ss_pred -EEEEEeeCCeEEEEEEEeC-CCcEEEEecCEEEEecCCCchh
Q 010765 161 -VTSLLEENGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 161 -v~~~~~~~~~v~~v~~~~~-~G~~~~v~ad~vI~ADG~~S~v 201 (502)
++++..++++|.||.+.+. +|+...++|+.||.|+|..+.+
T Consensus 158 ~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 158 FSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 9999988899999988764 5666678999999999999854
No 94
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.13 E-value=1.1e-08 Score=105.64 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=48.0
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc-EEEEecCEEEEecCCCch-hhhhhc
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQ-ELRAYAPLTIVCDGCFSN-LRRSLC 206 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~-~~~v~ad~vI~ADG~~S~-vR~~l~ 206 (502)
++-..+...|.+.+++. |+++++++ |+++..+++.+. +.+.+.++. ..+++||.||.|.|.+|. +.+.++
T Consensus 194 ~~~~~~~~~l~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~ 266 (410)
T PRK12409 194 GDIHKFTTGLAAACARL-GVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLG 266 (410)
T ss_pred cCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChHHHHHHhC
Confidence 34457788888888888 89999986 999987766543 333332210 224679999999999974 333444
No 95
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.13 E-value=1.3e-08 Score=105.45 Aligned_cols=60 Identities=37% Similarity=0.430 Sum_probs=45.5
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
++-..+...|.+.+++. |+++++++ |+++..+++.+.+|+ ++++ +++||.||.|.|.+|.
T Consensus 198 ~~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~--t~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVEGGRITGVQ--TGGG---VITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCEEEEEE--eCCc---EEeCCEEEECCCcchH
Confidence 44557888888888887 89999886 999988777654443 3444 3569999999999984
No 96
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.13 E-value=1.1e-09 Score=115.16 Aligned_cols=67 Identities=22% Similarity=0.327 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l 205 (502)
..+...|.+.+++. ++++++++ ++++..+++++.+|.+...+|+...++|+.||.|+|.++.-++.+
T Consensus 131 ~~l~~~l~~~~~~~-gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERL-GVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 35778888888887 89999987 999988778888888765667666788999999999887655444
No 97
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.10 E-value=1.2e-09 Score=116.47 Aligned_cols=143 Identities=22% Similarity=0.338 Sum_probs=90.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc------------------------------------
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------------------------------------ 94 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------------------------------------ 94 (502)
.+.++||||||+|.|||++|+.+++.|.+|+|+||.......+.
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v 92 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAV 92 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 35679999999999999999999999999999999865321110
Q ss_pred --------chhhhccccccceEEEEE--CCceeeeeccCcCCCCCCcceee------cchHHHHHHHHHHHcCCCeEEEe
Q 010765 95 --------DCVEEIDAQQVLGYALFK--DGKSTRLSYPLEKFHADVSGRSF------HNGRFIQRMREKAASLPNVRLEQ 158 (502)
Q Consensus 95 --------~~l~~l~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~~i------~r~~l~~~L~~~a~~~~~v~i~~ 158 (502)
+.++.+.. .|+.+.. +|... .... ......+.+ .-..+...|.+.+++. +++++.
T Consensus 93 ~~~~~~s~~~i~~L~~---~Gv~f~~~~~G~~~-~~~~----~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~ 163 (541)
T PRK07804 93 RSLVAEGPRAVRELVA---LGARFDESPDGRWA-LTRE----GGHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIRE 163 (541)
T ss_pred HHHHHHHHHHHHHHHH---cCCccccCCCCcEe-eecc----CCeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEE
Confidence 01111110 1222111 01000 0000 000001111 1135788888888887 599999
Q ss_pred ce-EEEEEeeC-CeEEEEEEEe----CCCcEEEEecCEEEEecCCCchhh
Q 010765 159 GT-VTSLLEEN-GTIKGVQYKT----KDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 159 ~~-v~~~~~~~-~~v~~v~~~~----~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
++ ++++..++ +++.||.+.+ .++....+.|+.||.|+|..|.++
T Consensus 164 ~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~ 213 (541)
T PRK07804 164 HALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLY 213 (541)
T ss_pred CeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCC
Confidence 98 99998765 5888888762 122235688999999999999764
No 98
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.10 E-value=1.4e-09 Score=116.74 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE-eCCCcEEEEecCEEEEecCCCchh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~-~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
..+...|.+.+++. +++++.++ ++++..+++++.|+... ..+|+...+.|+.||.|+|..+.+
T Consensus 135 ~~i~~~L~~~~~~~-gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRY-GVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhC-CCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 35778888888776 89999998 99998878888888753 357776678899999999999865
No 99
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=109.90 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=98.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCCCCCccc---------------------------chhhhcccc
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPDRIV---------------------------DCVEEIDAQ 103 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~~~~r~~---------------------------~~l~~l~~~ 103 (502)
.++||+|||||+.|+++|+.|++.+ ++|+|+||.......+. ..+.++..+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 99999999865432111 001111111
Q ss_pred ------ccceEEEEECCce-------------eeee-------------ccC-c--C--CCCCCcceeecchHHHHHHHH
Q 010765 104 ------QVLGYALFKDGKS-------------TRLS-------------YPL-E--K--FHADVSGRSFHNGRFIQRMRE 146 (502)
Q Consensus 104 ------~~~g~~~~~~g~~-------------~~~~-------------~~~-~--~--~~~~~~g~~i~r~~l~~~L~~ 146 (502)
.+..+.+..+.+. ..+. -|. . . ....+.+..++...+...|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 1111111111000 0000 000 0 0 001234457888889999999
Q ss_pred HHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc-hhhhhhcCCC
Q 010765 147 KAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS-NLRRSLCKPK 209 (502)
Q Consensus 147 ~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S-~vR~~l~~~~ 209 (502)
.++++ |+++++++ |+++.+.++++ ..+.+.+|++. ++|++||.|-|..| ++-+..+++.
T Consensus 162 ~a~~~-g~~i~ln~eV~~i~~~~dg~--~~~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 162 EAQAN-GVELRLNTEVTGIEKQSDGV--FVLNTSNGEET-LEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHc-CCEEEecCeeeEEEEeCCce--EEEEecCCcEE-EEeeEEEECCchhHHHHHHHhCCCc
Confidence 99998 89999998 99999988753 22345677764 77999999999987 4566666544
No 100
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=2.1e-09 Score=115.58 Aligned_cols=148 Identities=18% Similarity=0.259 Sum_probs=91.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-----------------------------------
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV----------------------------------- 94 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~----------------------------------- 94 (502)
+++.++||||||+|.|||++|+.+++.|.+|+|+||.......+.
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~ 87 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQ 87 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCH
Confidence 446679999999999999999999999999999999743221110
Q ss_pred -----------chhhhccccccceEEEEE--CCceeeeeccCcCC--CCCCcceeec-----chHHHHHHHHHHHcCCCe
Q 010765 95 -----------DCVEEIDAQQVLGYALFK--DGKSTRLSYPLEKF--HADVSGRSFH-----NGRFIQRMREKAASLPNV 154 (502)
Q Consensus 95 -----------~~l~~l~~~~~~g~~~~~--~g~~~~~~~~~~~~--~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v 154 (502)
+.++.+. ..|+.+.. +|......+..... ...+..+.++ -..+...|.+.+.+. ++
T Consensus 88 ~~v~~~~~~a~~~i~~L~---~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~-gi 163 (591)
T PRK07057 88 DAIEFMCREAPNVVYELE---HFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAA-KT 163 (591)
T ss_pred HHHHHHHHHHHHHHHHHH---hcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhc-CC
Confidence 0001110 01222211 11100000000000 0000001111 135788888888775 89
Q ss_pred EEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 155 RLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 155 ~i~~~~-v~~~~~~-~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+++.++ ++++..+ ++++.||.+.+ .+|+...+.|+-||.|+|..+.+
T Consensus 164 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 164 QFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 999988 8998865 57888998754 56776778899999999998864
No 101
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.08 E-value=1.7e-09 Score=112.19 Aligned_cols=140 Identities=24% Similarity=0.361 Sum_probs=87.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc--------------------------------------
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------------------------------------- 94 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------------------------------------- 94 (502)
.++||||||+|.+||++|+.++ .|.+|+|+||.+.....+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4689999999999999999985 7999999999865433211
Q ss_pred -----chhhhccccccceEEEEECCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEece-EEE
Q 010765 95 -----DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQGT-VTS 163 (502)
Q Consensus 95 -----~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~~~-v~~ 163 (502)
+.++.+. ..|+.+..... ...+... ......+.++ -..+...|.+.+++.+++++++++ +++
T Consensus 82 ~~~s~e~i~wL~---~~Gv~f~~~~~--~~~~~~~--g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~ 154 (433)
T PRK06175 82 ANESIENINKLI---DMGLNFDKDEK--ELSYTKE--GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVD 154 (433)
T ss_pred HHHHHHHHHHHH---HcCCccccCCC--ceeeecc--CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeee
Confidence 0001110 01111111100 0011000 0000111111 135777888888766689999998 999
Q ss_pred EEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 164 LLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 164 ~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+..+++++.+|.+.. +|+..++.|+.||.|+|..+.+
T Consensus 155 Li~~~~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 155 IIENDNTCIGAICLK-DNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred eEecCCEEEEEEEEE-CCcEEEEEcCeEEEccCccccc
Confidence 988788888877644 4555568899999999997753
No 102
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.08 E-value=2.1e-09 Score=114.54 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=92.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------------------------------------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------------------------------------- 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------------------------------------- 94 (502)
+.++||||||+|.|||++|+.+++. .+|+|+||.......+.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 84 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVR 84 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHH
Confidence 5678999999999999999999986 89999999864322111
Q ss_pred -------chhhhccccccceEEEEECCce-eeeeccCcCCCCCCcceeecc-----hHHHHHHHHHHHcCCCeEEEece-
Q 010765 95 -------DCVEEIDAQQVLGYALFKDGKS-TRLSYPLEKFHADVSGRSFHN-----GRFIQRMREKAASLPNVRLEQGT- 160 (502)
Q Consensus 95 -------~~l~~l~~~~~~g~~~~~~g~~-~~~~~~~~~~~~~~~g~~i~r-----~~l~~~L~~~a~~~~~v~i~~~~- 160 (502)
+.++.+. ..|..+...... ....+...........+.++. ..+...|.+.+.+.++++++.++
T Consensus 85 ~~~~~~~~~i~~L~---~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~ 161 (536)
T PRK09077 85 FIAENAREAVQWLI---DQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHN 161 (536)
T ss_pred HHHHHHHHHHHHHH---HcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEE
Confidence 0000000 011111110000 000000000000111122221 35788888888887899999998
Q ss_pred EEEEEeeC------CeEEEEEEEe-CCCcEEEEecCEEEEecCCCchhhh
Q 010765 161 VTSLLEEN------GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 161 v~~~~~~~------~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
++++..++ +++.||.+.+ .+|+...+.|+.||.|+|..+.+..
T Consensus 162 v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 162 AIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred eeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 88887653 7889998865 4677777899999999999997654
No 103
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.07 E-value=2.4e-09 Score=111.67 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
..+...|.+.+++. ++++++++ +++++.+ ++++.+|.+...+++...+.++.||.|+|.+|.-.
T Consensus 130 ~~l~~~l~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~ 195 (439)
T TIGR01813 130 AEIVQKLYKKAKKE-GIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNK 195 (439)
T ss_pred HHHHHHHHHHHHHc-CCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCH
Confidence 46888898888887 89999988 9999875 46788888877777666678999999999998743
No 104
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=2.5e-09 Score=115.82 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEecCEEEEecCCCchh
Q 010765 142 QRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 142 ~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~-~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+.|.+.+++. ++++++++ ++++..++++|.||.+.+. +|+...+.|+.||.|+|..+.+
T Consensus 174 ~~L~~~~~~~-gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAG-TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhc-CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 5566667665 89999998 9999888889999988763 6776678899999999998865
No 105
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=2.6e-09 Score=115.04 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+...|.+.+.+. ++++++++ ++++..++ ++|.||.+.+ .+|+.+.+.|+.||.|+|..+..
T Consensus 150 ~i~~~L~~~~~~~-gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 150 AILHTLYQQSLKH-NAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHhhc-CCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 5788888888876 89999998 99998765 6899998754 67887788999999999998853
No 106
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.06 E-value=2.5e-09 Score=115.35 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCCCccc--c--hh--------------hhcccc--------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIV--D--CV--------------EEIDAQ-------- 103 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~~r~~--~--~l--------------~~l~~~-------- 103 (502)
+.++||||||||.|||++|+.+++. |.+|+|+||......... + .. +.+...
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~ 88 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRED 88 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHH
Confidence 4568999999999999999999998 999999999854221110 0 00 000000
Q ss_pred ----------------ccceEEEEECCceeeeeccCcCCC-CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEE
Q 010765 104 ----------------QVLGYALFKDGKSTRLSYPLEKFH-ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLL 165 (502)
Q Consensus 104 ----------------~~~g~~~~~~g~~~~~~~~~~~~~-~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~ 165 (502)
...|+.+..... .... .......+.-..+...|.+.+++.+++++++++ ++++.
T Consensus 89 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~--------G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li 160 (608)
T PRK06854 89 LVYDIARHVDSVVHLFEEWGLPIWKDEN--------GKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLL 160 (608)
T ss_pred HHHHHHHhHHHHHHHHHHcCCeeeecCC--------CCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEE
Confidence 001111110000 0000 000000123346778888888887669999998 99998
Q ss_pred eeCCeEEEEEEE-eCCCcEEEEecCEEEEecCCCch
Q 010765 166 EENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 166 ~~~~~v~~v~~~-~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.+++++.||.+. ..+|+...++|+.||.|+|..+.
T Consensus 161 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 161 VDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 777888888753 35676667889999999999874
No 107
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.06 E-value=3.2e-09 Score=114.62 Aligned_cols=146 Identities=20% Similarity=0.275 Sum_probs=92.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------------------------------------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------------------------------------- 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------------------------------------- 94 (502)
+.++||||||||.|||++|+.+++.|.+|+|+||.......+.
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 3578999999999999999999999999999999854322111
Q ss_pred ---------chhhhccccccceEEEEEC--CceeeeeccCcCC--CCC-Ccceee---c--chHHHHHHHHHHHcCCCeE
Q 010765 95 ---------DCVEEIDAQQVLGYALFKD--GKSTRLSYPLEKF--HAD-VSGRSF---H--NGRFIQRMREKAASLPNVR 155 (502)
Q Consensus 95 ---------~~l~~l~~~~~~g~~~~~~--g~~~~~~~~~~~~--~~~-~~g~~i---~--r~~l~~~L~~~a~~~~~v~ 155 (502)
+.++.+. ..|+.+... |......+..... ... ...+.+ + -..+...|.+.+++. |++
T Consensus 107 v~~l~~~s~~~i~~L~---~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~-gv~ 182 (617)
T PTZ00139 107 IQYMCREAPQAVLELE---SYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY-DCN 182 (617)
T ss_pred HHHHHHHHHHHHHHHH---hcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC-CCE
Confidence 0111111 112222111 1100000000000 000 000111 1 136788888888886 899
Q ss_pred EEece-EEEEEe-eCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 156 LEQGT-VTSLLE-ENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 156 i~~~~-v~~~~~-~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
++.++ ++++.. ++++|.||.+.+ .+|+...+.|+.||.|+|..+..
T Consensus 183 i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 183 FFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 99998 999887 577899988744 67887788999999999998753
No 108
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=3.4e-09 Score=114.71 Aligned_cols=146 Identities=22% Similarity=0.339 Sum_probs=89.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------chh------hhccc---------------
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------DCV------EEIDA--------------- 102 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------~~l------~~l~~--------------- 102 (502)
++.++||||||||.|||++|+.+++.|.+|+|+||.......+. -.+ +....
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~ 84 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNW 84 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcH
Confidence 34678999999999999999999999999999999854321110 000 00000
Q ss_pred --------c--------ccceEEEEE--CCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCC-------
Q 010765 103 --------Q--------QVLGYALFK--DGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLP------- 152 (502)
Q Consensus 103 --------~--------~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~------- 152 (502)
. ...|+.+.. +++.....+ ......+.++ -..+...|.+.+.+.+
T Consensus 85 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~-----gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~ 159 (626)
T PRK07803 85 RMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNF-----GGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAEL 159 (626)
T ss_pred HHHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeec-----CCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccc
Confidence 0 001111111 010000000 0000111111 1356777877776652
Q ss_pred C-----eEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 153 N-----VRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 153 ~-----v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
| ++++.++ ++++..+++.+.||.... .+|+...+.|+.||.|+|..+..
T Consensus 160 G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 160 GDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred cCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCC
Confidence 4 9999998 999988788888887654 56777778999999999986644
No 109
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.05 E-value=2.7e-09 Score=115.22 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+...|.+.+.+. +++++.++ ++++..+ ++++.||.+.+ .+|+...+.|+.||.|+|..+..
T Consensus 188 ~i~~~L~~~a~~~-gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 188 AMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHhC-CCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 5788888888876 89999888 8998876 67899998765 57887788999999999999854
No 110
>PRK07121 hypothetical protein; Validated
Probab=99.04 E-value=5.4e-09 Score=110.52 Aligned_cols=64 Identities=23% Similarity=0.417 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEec-CEEEEecCCCchhhh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSNLRR 203 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~~~G~~~~v~a-d~vI~ADG~~S~vR~ 203 (502)
..+...|.+.+++. +++++.++ ++++..++ +++.+|.+.. +++...++| +.||.|+|..+.-++
T Consensus 177 ~~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~N~e 243 (492)
T PRK07121 177 AMLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAMNRE 243 (492)
T ss_pred HHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCcCHH
Confidence 45788888888887 89999988 99998764 5788888754 555667889 999999999986333
No 111
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.03 E-value=3.5e-09 Score=114.90 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+...|.+.+.+. |+++++++ +++++.+++++.||.+.+ .+|+...+.|+-||.|+|..+.+
T Consensus 159 ~l~~~L~~~~~~~-gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 159 TMLYAVDNEAIKL-GVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHhC-CCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 4566787878776 89999998 999998888999998876 67887778999999999998865
No 112
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.01 E-value=1.3e-08 Score=97.18 Aligned_cols=155 Identities=26% Similarity=0.322 Sum_probs=97.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc--------cc--------------chhhhccccc-cceE
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR--------IV--------------DCVEEIDAQQ-VLGY 108 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r--------~~--------------~~l~~l~~~~-~~g~ 108 (502)
....||+|||||+-||++|+.|+++|.+++++|+-+.+..+ +. ++.+.+...+ ..+.
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~ 84 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV 84 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence 45689999999999999999999999999999998766432 22 3333332221 1111
Q ss_pred EEE--------ECC------------------------ceeeeeccC-cCCC------CCCcceeecchHHHHHHHHHHH
Q 010765 109 ALF--------KDG------------------------KSTRLSYPL-EKFH------ADVSGRSFHNGRFIQRMREKAA 149 (502)
Q Consensus 109 ~~~--------~~g------------------------~~~~~~~~~-~~~~------~~~~g~~i~r~~l~~~L~~~a~ 149 (502)
.++ .+. +...-.||. ..++ .+..|-.+.-..-...|.+.++
T Consensus 85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 111 111 001111221 0111 1233345666677888888999
Q ss_pred cCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC--chhhhhhcCCC
Q 010765 150 SLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF--SNLRRSLCKPK 209 (502)
Q Consensus 150 ~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~--S~vR~~l~~~~ 209 (502)
++ |+.++.|+ +......+.....|.+++.+|..+. |+-+|.+.|++ +-++..+++.+
T Consensus 165 ~~-G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~--akkiI~t~GaWi~klL~~~~~~~~ 224 (399)
T KOG2820|consen 165 EL-GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYH--AKKIIFTVGAWINKLLPTSLAIGF 224 (399)
T ss_pred Hc-CeEEecCcceeeEeeccCCCceeEEEeccCCeee--cceEEEEecHHHHhhcCcccccCC
Confidence 98 89999998 6666543333335677788898765 99999999998 33444444444
No 113
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=4.3e-09 Score=112.40 Aligned_cols=62 Identities=15% Similarity=0.295 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCe-EEEEEEEe-CCCcEEEEecCEEEEecCCCch
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGT-IKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~-v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
..+...|.+.+++. +++++.++ ++++..++++ +.||.+.. .+|+...++|+.||.|+|..+.
T Consensus 134 ~~i~~~L~~~~~~~-gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 134 HEMMMGLMEYLIKE-RIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHhcC-CCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 35677888888774 89999998 9999877665 88888766 6787778899999999999885
No 114
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=5.2e-09 Score=112.42 Aligned_cols=62 Identities=11% Similarity=0.205 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+...|.+.+.+. +++++.++ ++++..+ +++|.||.+.+ .+|+...+.|+-||.|+|..+.+
T Consensus 144 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 144 ALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHhhhc-CCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 5778888877765 89999988 9999875 67899998754 67877788999999999999864
No 115
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.00 E-value=5.1e-09 Score=110.10 Aligned_cols=143 Identities=27% Similarity=0.355 Sum_probs=91.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc------cc-----chhhhcccccc-ceEEEEECCceeeeecc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR------IV-----DCVEEIDAQQV-LGYALFKDGKSTRLSYP 122 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r------~~-----~~l~~l~~~~~-~g~~~~~~g~~~~~~~~ 122 (502)
+||+|||||++|+.+|..+++.|.+|+|+|++...... .. .+.+++++..- .+. +. ....+.+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~-~~---d~~~i~~r 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGK-AA---DKAGLQFR 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHH-HH---Hhhceehe
Confidence 69999999999999999999999999999997432211 00 12233322100 000 00 00000111
Q ss_pred CcCCC----CCCcceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEee-CCeEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 123 LEKFH----ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEE-NGTIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 123 ~~~~~----~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~-~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
..... .......+++..+...|.+.+++.++++++.++++++..+ ++.+.+|.. .+|.. ++|+.||.|+|.
T Consensus 77 ~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t--~~G~~--I~Ad~VILATGt 152 (617)
T TIGR00136 77 VLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVT--QDGLK--FRAKAVIITTGT 152 (617)
T ss_pred ecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEE--CCCCE--EECCEEEEccCc
Confidence 00000 0011236788899999999999999999999998888765 567766654 55654 569999999999
Q ss_pred Cchhhhhh
Q 010765 198 FSNLRRSL 205 (502)
Q Consensus 198 ~S~vR~~l 205 (502)
++.=+..+
T Consensus 153 fL~g~ihi 160 (617)
T TIGR00136 153 FLRGKIHI 160 (617)
T ss_pred ccCCCEEe
Confidence 97533333
No 116
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=7e-09 Score=111.55 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeC----CeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEEN----GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~----~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
..+...|.+.+++. +++++.++ ++++..++ +++.||.... .+|+...+.|+.||.|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35778888888876 89999998 99988655 6888988743 56776678899999999999865
No 117
>PLN02815 L-aspartate oxidase
Probab=98.98 E-value=6.4e-09 Score=111.35 Aligned_cols=143 Identities=20% Similarity=0.329 Sum_probs=89.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------------------------------------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------------------------------------- 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------------------------------------- 94 (502)
+.++||||||+|.|||++|+.+++.| +|+|+||.......+.
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 55789999999999999999999999 9999999865332111
Q ss_pred -------chhhhccccccceEEEEECCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEece-E
Q 010765 95 -------DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQGT-V 161 (502)
Q Consensus 95 -------~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~~~-v 161 (502)
+.++.+. ..|+.+...... ... ..........+.++ -..+...|.+.+.+.+++++++++ +
T Consensus 106 ~~~~~s~e~i~~L~---~~Gv~F~~~~~g-~~~--~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~ 179 (594)
T PLN02815 106 VVCTEGPERVKELI---AMGASFDHGEDG-NLH--LAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFA 179 (594)
T ss_pred HHHHHHHHHHHHHH---HhCCeeeecCCC-Ccc--ccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEh
Confidence 0111110 112222111000 000 00000000001111 134778888888877789999988 8
Q ss_pred EEEEeeC-C---eEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 162 TSLLEEN-G---TIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 162 ~~~~~~~-~---~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
++++.++ + .|.||.+.+ .+|+...+.|+-||.|+|..+.+
T Consensus 180 ~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 180 IDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred heeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 9988753 3 278888754 57777788999999999998753
No 118
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.97 E-value=7e-09 Score=109.76 Aligned_cols=139 Identities=25% Similarity=0.366 Sum_probs=87.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc---------------------------------------
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV--------------------------------------- 94 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~--------------------------------------- 94 (502)
++||||||+|.|||++|+.+++ |.+|+|+||.+.....+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6799999999999999999986 999999999865332211
Q ss_pred -----chhhhccccccceEEEEECCceeeeeccCcCCCCCCcceeec------chHHHHHHHHHHHcCCCeEEEece-EE
Q 010765 95 -----DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH------NGRFIQRMREKAASLPNVRLEQGT-VT 162 (502)
Q Consensus 95 -----~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~------r~~l~~~L~~~a~~~~~v~i~~~~-v~ 162 (502)
+.++.+. ..|+.+..+... .+... ........+.++ -..+...|.+.+. .++++++++ ++
T Consensus 82 ~~~s~~~i~~L~---~~Gv~f~~~~~g-~~~~~--~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~ 153 (510)
T PRK08071 82 VEEGPKEIQELI---ENGMPFDGDETG-PLHLG--KEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVI 153 (510)
T ss_pred HHHHHHHHHHHH---HcCCccccCCCC-ceeec--cCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhh
Confidence 0000110 012222100000 00000 000000011111 1246777877775 389999988 89
Q ss_pred EEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 163 SLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 163 ~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
++..+++.+.||.+.+.+|+...++|+.||.|+|..+.+
T Consensus 154 ~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 154 DLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred heeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 988778888888877777777778899999999998863
No 119
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1e-08 Score=110.27 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCC---CeEEEece-EEEEEee-CCeEEEEEEEeC-CCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLP---NVRLEQGT-VTSLLEE-NGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~---~v~i~~~~-v~~~~~~-~~~v~~v~~~~~-~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+...|.+.+.+.+ ++++..++ ++++..+ +++|.||.+.+. +|+...+.|+-||.|+|..+.+
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII 202 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence 46777777766542 37888887 8888864 678999988764 5666678899999999999864
No 120
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.96 E-value=1.2e-08 Score=106.27 Aligned_cols=146 Identities=21% Similarity=0.321 Sum_probs=84.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc--chh--hhccccc----cce--EE-EEECCceeee--
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV--DCV--EEIDAQQ----VLG--YA-LFKDGKSTRL-- 119 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~--~~l--~~l~~~~----~~g--~~-~~~~g~~~~~-- 119 (502)
...+|+|||||++||++|..|.+.|++|+|+||+...++... ... +.+.... +.. +. +..+......
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 357999999999999999999999999999999865543211 000 0000000 000 00 0000000000
Q ss_pred -eccCcCC--CC-CCcceeecchHHHHHHHHHHHcCCCeE--EEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEE
Q 010765 120 -SYPLEKF--HA-DVSGRSFHNGRFIQRMREKAASLPNVR--LEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTI 192 (502)
Q Consensus 120 -~~~~~~~--~~-~~~g~~i~r~~l~~~L~~~a~~~~~v~--i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI 192 (502)
.+|.... .. .....-.++..+.+.|.+.++.. ++. +++++ |+++...++.+. |+.+..++...+..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-gl~~~I~~~t~V~~V~~~~~~w~-V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-KIEEMVRFETEVVRVEPVDGKWR-VQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-CCcceEEecCEEEEEeecCCeEE-EEEEcCCCceEEEEcCEEE
Confidence 1111100 00 00011235677889999999887 666 78887 999987666543 4444333343345699999
Q ss_pred EecCCCch
Q 010765 193 VCDGCFSN 200 (502)
Q Consensus 193 ~ADG~~S~ 200 (502)
.|.|..+.
T Consensus 167 vAtG~~~~ 174 (461)
T PLN02172 167 VCNGHYTE 174 (461)
T ss_pred EeccCCCC
Confidence 99998753
No 121
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.96 E-value=1.1e-08 Score=107.07 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=52.0
Q ss_pred eeecchHHHHHHHHHHHc----CC-CeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch-hhhhh
Q 010765 133 RSFHNGRFIQRMREKAAS----LP-NVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN-LRRSL 205 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~----~~-~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~-vR~~l 205 (502)
..++...+...|.+.+++ .+ ++++++++ |+++..+++.+. .+.+.+| +++||.||.|.|.+|. +.+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~--~V~T~~G---~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLY--KIHTNRG---EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeE--EEEECCC---EEEeCEEEECcChhHHHHHHHh
Confidence 356778899999999888 62 27889988 999988755433 3445556 3669999999999984 56666
Q ss_pred cC
Q 010765 206 CK 207 (502)
Q Consensus 206 ~~ 207 (502)
|+
T Consensus 281 Gi 282 (497)
T PTZ00383 281 GY 282 (497)
T ss_pred CC
Confidence 65
No 122
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.95 E-value=5.8e-09 Score=109.29 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=46.0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
..++...+...|.+.+++. |+++++++ |+++.. ++. +.+.+++|+ ++||.||.|.|++|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~-~~~---~~v~t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALEL-GVEIHENTPMTGLEE-GQP---AVVRTPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHc-CCEEECCCeEEEEee-CCc---eEEEeCCcE---EECCEEEEccccccc
Confidence 4567788999999999888 89999998 888875 332 334455563 569999999999874
No 123
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.95 E-value=8.9e-09 Score=109.72 Aligned_cols=140 Identities=24% Similarity=0.319 Sum_probs=87.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------------------------------------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV------------------------------------- 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~------------------------------------- 94 (502)
+.++||||||+|.|||++|+.++ .|.+|+|+||.+.....+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 85 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 85 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 56789999999999999999997 4999999999865332111
Q ss_pred -------chhhhccccccceEEEEECCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEece-E
Q 010765 95 -------DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQGT-V 161 (502)
Q Consensus 95 -------~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~~~-v 161 (502)
+.++.+. ..|+.+...+........ ......+.++ -..+...|.+.+.+.+++++++++ +
T Consensus 86 ~~~~~s~~~i~wL~---~~Gv~f~~~~~~~~~~~~----~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v 158 (553)
T PRK07395 86 FLVEQAPEAIASLV---EMGVAFDRHGQHLALTLE----AAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALA 158 (553)
T ss_pred HHHHHHHHHHHHHH---hcCCeeecCCCceeeecc----cccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcCh
Confidence 0011111 012222111000000000 0000011111 135777888888766689999988 9
Q ss_pred EEEEeeC--CeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 162 TSLLEEN--GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 162 ~~~~~~~--~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
+++..++ +.|.||.+.. +|....+.|+-||.|+|..+.
T Consensus 159 ~~Li~~~~~g~v~Gv~~~~-~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 159 LSLWLEPETGRCQGISLLY-QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred hhheecCCCCEEEEEEEEE-CCeEEEEEcCEEEEcCCCCcc
Confidence 9998763 6888987754 666667889999999999764
No 124
>PRK08275 putative oxidoreductase; Provisional
Probab=98.94 E-value=1.4e-08 Score=108.80 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+.+.|.+.+++. ++++++++ ++++..+ ++.+.||.+.+ .+|+...+.|+.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRA-RVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHC-CCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 5778888888776 89999998 9999876 67788887654 57776678899999999998754
No 125
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.94 E-value=7.2e-09 Score=108.72 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=55.5
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE-eCCCcEEEEecCEEEEecCCCc-hhhhhhcCC
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFS-NLRRSLCKP 208 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~-~~~G~~~~v~ad~vI~ADG~~S-~vR~~l~~~ 208 (502)
+..++...+.+.|.+.+++.+++++++++ |+++..++++...|.+. ..+|+..+++|++||.|.|.+| .+++.+|+.
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 34678889999999999988668999998 99998755532224433 2445434577999987777775 577777765
No 126
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.94 E-value=1.6e-08 Score=105.49 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=56.3
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEE-eCCCcEEEEecCEEEEecCCCc-hhhhhhc
Q 010765 131 SGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFS-NLRRSLC 206 (502)
Q Consensus 131 ~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~-~~~G~~~~v~ad~vI~ADG~~S-~vR~~l~ 206 (502)
.+..++...+.+.|.+.+.+.+|+++++++ |+++.++ ++.+. +.++ ..+|+..+++||+||.|-|.+| .+.+.+|
T Consensus 177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~G 255 (497)
T PRK13339 177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSG 255 (497)
T ss_pred CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence 345688889999999998766689999998 9998876 55443 4433 3445333467999998888887 4677777
Q ss_pred CCC
Q 010765 207 KPK 209 (502)
Q Consensus 207 ~~~ 209 (502)
++.
T Consensus 256 i~~ 258 (497)
T PRK13339 256 IPE 258 (497)
T ss_pred CCc
Confidence 653
No 127
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.92 E-value=2e-07 Score=95.38 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=45.8
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
..++...+...|.+.+.+.+...+..++ +..+.++. + .+.+.+.+|+ +.||.||.|.|.+|..
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~--~~~v~t~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-R--VVGVETDGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-c--EEEEEeCCcc---EEeCEEEEcCchHHHH
Confidence 3566678889999999998446666666 77777652 2 3445566676 5599999999999764
No 128
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.91 E-value=2.1e-08 Score=105.14 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=59.6
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEE-eCCCcEEEEecCEEEEecCCCc-hhhhhhcCCC
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYK-TKDGQELRAYAPLTIVCDGCFS-NLRRSLCKPK 209 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~-~~~G~~~~v~ad~vI~ADG~~S-~vR~~l~~~~ 209 (502)
..++...+...|.+.+++. |+++++++ |+++.+++++...+.+. ..+|+..+++||+||.|.|.+| .+++.+|+..
T Consensus 173 g~Vdp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~ 251 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE 251 (483)
T ss_pred EEECHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc
Confidence 4677889999999999887 89999997 99998765432224333 2445444578999977777665 6788888753
Q ss_pred -CCCc-cceeEEEE
Q 010765 210 -VDVP-SCFVGLVL 221 (502)
Q Consensus 210 -~~~~-~~~~~~~~ 221 (502)
.+.. ..+.|.++
T Consensus 252 ~~~~~i~P~~Gq~l 265 (483)
T TIGR01320 252 VKGFAGFPVSGLFL 265 (483)
T ss_pred CCCCceeeeeEEEE
Confidence 1222 34555444
No 129
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.91 E-value=4.1e-08 Score=105.01 Aligned_cols=63 Identities=32% Similarity=0.401 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-EEEEecCCCchhhh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNLRR 203 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad-~vI~ADG~~S~vR~ 203 (502)
.+...|.+.+++. +++++.++ +++++.++++|+||.+.. +|+.+++.|+ -||.|+|..+.-.+
T Consensus 209 ~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~~g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~N~e 273 (557)
T PRK12844 209 ALIGRMLEAALAA-GVPLWTNTPLTELIVEDGRVVGVVVVR-DGREVLIRARRGVLLASGGFGHNAE 273 (557)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEEEEE-CCeEEEEEecceEEEecCCccCCHH
Confidence 4666777888877 89999998 999998889999998864 5666778885 68889999887433
No 130
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.90 E-value=2.3e-08 Score=98.45 Aligned_cols=113 Identities=24% Similarity=0.348 Sum_probs=75.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
+||+|||||++|+++|..|++.|++|+|+|+.. ...+.. ..... ..++ ... ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~-----------------~~~~~--~~~~--~~~-----~~ 53 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT-----------------TTTEV--ENYP--GFP-----EG 53 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee-----------------ecccc--cccC--CCC-----CC
Confidence 599999999999999999999999999999874 211100 00000 0011 000 11
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
+....+...+.+.+++. +++++.++|+++..+++. +.+...+|.+ +++|+||.|+|....
T Consensus 54 ~~~~~~~~~l~~~~~~~-gv~~~~~~v~~v~~~~~~---~~v~~~~~~~--~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKF-GAEIIYEEVIKVDLSDRP---FKVKTGDGKE--YTAKAVIIATGASAR 113 (300)
T ss_pred CChHHHHHHHHHHHHHc-CCeEEEEEEEEEEecCCe---eEEEeCCCCE--EEeCEEEECCCCCcc
Confidence 23345677788888877 789888669888776553 3344555654 569999999998653
No 131
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.89 E-value=4.8e-08 Score=104.57 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-EEEEecCCCchhhh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNLRR 203 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad-~vI~ADG~~S~vR~ 203 (502)
.+...|.+.+++. +++++.++ +++++.++++|++|.+.. +|+...++|+ -||.|.|..+.-++
T Consensus 209 ~~~~~L~~~~~~~-gv~v~~~t~v~~l~~~~g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~n~~ 273 (557)
T PRK07843 209 ALAAGLRIGLQRA-GVPVLLNTPLTDLYVEDGRVTGVHAAE-SGEPQLIRARRGVILASGGFEHNEQ 273 (557)
T ss_pred HHHHHHHHHHHcC-CCEEEeCCEEEEEEEeCCEEEEEEEEe-CCcEEEEEeceeEEEccCCcCcCHH
Confidence 3566677777776 89999998 999998888899988754 5666778896 58888888877443
No 132
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.89 E-value=2e-08 Score=106.38 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+...|.+.+.+.++++++.++ ++++..+++++.||.+.+. +....+.|+.||.|+|..+..
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATA-GGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeC-CeEEEEECCEEEEcCCCCcCC
Confidence 5788888888776689999998 9998877788888887653 334567899999999998753
No 133
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.89 E-value=4.6e-08 Score=104.46 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec-CEEEEecCCCchhhhh
Q 010765 140 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSNLRRS 204 (502)
Q Consensus 140 l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a-d~vI~ADG~~S~vR~~ 204 (502)
|...|.+.+++. |++++.++ +++++.++++|+||.+.. +|.++.+.+ +-||.|+|.++...+.
T Consensus 219 l~~~L~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n~em 283 (564)
T PRK12845 219 LAAGLFAGVLRA-GIPIWTETSLVRLTDDGGRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHDMEM 283 (564)
T ss_pred HHHHHHHHHHHC-CCEEEecCEeeEEEecCCEEEEEEEEE-CCcEEEEEcCCEEEEecCCccccHHH
Confidence 555677778776 89999998 999987778899998765 455556666 5899999999976544
No 134
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.89 E-value=1.4e-09 Score=100.84 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=73.5
Q ss_pred EEECCCHHHHHHHHHHhhCCCe-EEEEecCCCCCCcccchhhhcccc-ccceEEEEEC-Cceeeee-ccCcCCCC-CCcc
Q 010765 58 IIVGAGVAGAALAHTLGKDGRR-VHVIERDVTEPDRIVDCVEEIDAQ-QVLGYALFKD-GKSTRLS-YPLEKFHA-DVSG 132 (502)
Q Consensus 58 vIVGaG~aGl~~A~~La~~G~~-v~lvEr~~~~~~r~~~~l~~l~~~-~~~g~~~~~~-g~~~~~~-~~~~~~~~-~~~g 132 (502)
+||||||+||++|..|.++|++ |+|+||+...... +...... .......+.. -....+. +.....+. ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGV----WRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPH 76 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTH----HHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCe----eEEeCCCCccccCccccccccCCcccccccccCCCCCCCc
Confidence 6999999999999999999999 9999998654432 2211000 0000000000 0000000 00000000 0011
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
....+..+.+.|.+.+++. +..+++++ |+++..++++ ..+...+++ +++||.||.|.|..|.
T Consensus 77 ~~~~~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~~~~---w~v~~~~~~--~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 77 DFPSGEEVLDYLQEYAERF-GLEIRFNTRVESVRRDGDG---WTVTTRDGR--TIRADRVVLATGHYSH 139 (203)
T ss_dssp SSEBHHHHHHHHHHHHHHT-TGGEETS--EEEEEEETTT---EEEEETTS---EEEEEEEEE---SSCS
T ss_pred ccCCHHHHHHHHHHHHhhc-CcccccCCEEEEEEEeccE---EEEEEEecc--eeeeeeEEEeeeccCC
Confidence 2366777888898888888 77898988 9999998876 335567774 4559999999998765
No 135
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.4e-08 Score=97.73 Aligned_cols=114 Identities=25% Similarity=0.359 Sum_probs=75.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCe-EEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~-v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
+.+||+||||||+||++|+.+++.|.+ ++|+|+... .... .... .+ -.|| ..+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-gg~~----~~~~--~v-------------enyp-----g~~- 55 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-GGQL----TKTT--DV-------------ENYP-----GFP- 55 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-CCcc----ccce--ee-------------cCCC-----CCc-
Confidence 468999999999999999999999998 777776532 1000 0000 00 0111 100
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
-.+.-..|.+.+.+.+... ++++....+.++...++ ...+++++|+ ++|+.||.|.|....
T Consensus 56 -~~~~g~~L~~~~~~~a~~~-~~~~~~~~v~~v~~~~~---~F~v~t~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 56 -GGILGPELMEQMKEQAEKF-GVEIVEDEVEKVELEGG---PFKVKTDKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred -cCCchHHHHHHHHHHHhhc-CeEEEEEEEEEEeecCc---eEEEEECCCe---EEEeEEEECcCCccc
Confidence 0123346788888888865 89988866888876654 2445666776 459999999998653
No 136
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.88 E-value=4.9e-08 Score=104.99 Aligned_cols=61 Identities=26% Similarity=0.378 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-EEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad-~vI~ADG~~S~v 201 (502)
.+...|.+.+++. |++++.++ ++++..++++|++|.+.+.++. .++.++ -||.|.|.++.-
T Consensus 215 ~l~~~L~~~~~~~-Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~-~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 215 ALAARLAKSALDL-GIPILTGTPARELLTEGGRVVGARVIDAGGE-RRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEEcCCce-EEEEeCCEEEEcCCCccch
Confidence 3566677777776 89999998 9999888888989988765553 456675 799999999843
No 137
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.88 E-value=5.2e-08 Score=104.31 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=49.3
Q ss_pred HHHHHHHHHHH---cCCCeEEEece-EEEEEeeCCeEEEEEEEe--C------------CCcEEEEecCEEEEecCCCch
Q 010765 139 RFIQRMREKAA---SLPNVRLEQGT-VTSLLEENGTIKGVQYKT--K------------DGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 139 ~l~~~L~~~a~---~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~--~------------~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.+...|.+.++ +.+++++++++ +++++.++++|+||.+.. . +++.+++.|+-||.|+|.++.
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 35566665554 34569999998 999998888999998632 1 123457889999999999998
Q ss_pred hhhhh
Q 010765 201 LRRSL 205 (502)
Q Consensus 201 vR~~l 205 (502)
..+.+
T Consensus 229 n~em~ 233 (549)
T PRK12834 229 NHELV 233 (549)
T ss_pred CHHHH
Confidence 76554
No 138
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.88 E-value=3.1e-08 Score=106.67 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=46.1
Q ss_pred HHHHHHHHHHc---CCCeEEEece-EEEEEeeC-CeEEEEEEEeC-CCcEEEEecCEEEEecCCCchh
Q 010765 140 FIQRMREKAAS---LPNVRLEQGT-VTSLLEEN-GTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 140 l~~~L~~~a~~---~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~~-~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+...|.+.+++ .+++++++++ ++++..++ ++|.||.+.+. +|+...+.|+.||.|+|..+.+
T Consensus 131 i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 131 LLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred HHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 44445444432 3479999998 99988754 58999988763 6776678999999999998754
No 139
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.87 E-value=4.4e-08 Score=103.90 Aligned_cols=62 Identities=27% Similarity=0.424 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecC-EEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad-~vI~ADG~~S~v 201 (502)
.+...|.+.+.+.++++++.++ +++++.+++.|.+|.+.. +|+..+++|+ -||.|+|..+.-
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-GGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-CCcEEEEEeCceEEEeCCCccCC
Confidence 3556666666666689999998 999988888999998754 5777778896 566666665543
No 140
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.87 E-value=1.9e-08 Score=105.44 Aligned_cols=143 Identities=24% Similarity=0.317 Sum_probs=83.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc---ch---------hhhccccccceEEEEEC---------
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV---DC---------VEEIDAQQVLGYALFKD--------- 113 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~---~~---------l~~l~~~~~~g~~~~~~--------- 113 (502)
.||+|||||++||++|+.+++.|.+|+|+||.+....... ++ .+..............+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999853221110 00 00000000000000000
Q ss_pred --Cce------eeeeccCcC-CCCCCcceee-----cchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeC
Q 010765 114 --GKS------TRLSYPLEK-FHADVSGRSF-----HNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTK 179 (502)
Q Consensus 114 --g~~------~~~~~~~~~-~~~~~~g~~i-----~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~ 179 (502)
.+. ..+.+.... .......... .-..+.+.|.+.+++. ++++.+++++.+..+++++.+|..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~v~~l~~~~g~v~Gv~~--- 157 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAREL-GVNFIRGFAEELAIKNGKAYGVFL--- 157 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhc-CCEEEEeEeEEEEeeCCEEEEEEE---
Confidence 000 001111000 0000000111 1235788888888876 899888778888777777777765
Q ss_pred CCcEEEEecCEEEEecCCCchhhh
Q 010765 180 DGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 180 ~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
+|+ .+.++.||.|+|.+|....
T Consensus 158 ~g~--~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 158 DGE--LLKFDATVIATGGFSGLFK 179 (466)
T ss_pred CCE--EEEeCeEEECCCcCcCCCC
Confidence 344 3679999999999998654
No 141
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.85 E-value=3.5e-08 Score=100.34 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=42.5
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
..++...+...|.+.+.+..|+++++++ |+++... . +.+.+|+ ++||.||.|.|.+|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~--v~t~~g~---i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG-----T--VRTSRGD---VHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----e--EEeCCCc---EEeCEEEECCCCChh
Confidence 3466677888888887765589999887 8888532 2 3345564 459999999999874
No 142
>PRK12839 hypothetical protein; Provisional
Probab=98.85 E-value=8.6e-08 Score=102.66 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 137 NGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 137 r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
-..|...|.+.+++. |++++.++ +++++.+ +++|+||.+...+|+.....++-||.|.|.++.
T Consensus 213 g~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 213 GTALTGRLLRSADDL-GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHHC-CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 345677788888887 89999998 9998764 578999998777776444456899999999886
No 143
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.83 E-value=9.9e-08 Score=102.68 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec-CEEEEecCCCch
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSN 200 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a-d~vI~ADG~~S~ 200 (502)
.|...|.+.+++. |++++.++ +++++.+++++.+|.+...++ ..+++| +.||.|.|.++.
T Consensus 218 ~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 218 ALVARLLKSAEDL-GVRIWESAPARELLREDGRVAGAVVETPGG-LQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEEECCc-EEEEEeCCEEEEcCCCccc
Confidence 3667888888887 89999998 999888788888888866544 456789 999999999986
No 144
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.83 E-value=5.8e-08 Score=104.31 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecC-EEEEecCCCchhh
Q 010765 140 FIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAP-LTIVCDGCFSNLR 202 (502)
Q Consensus 140 l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~~~G~~~~v~ad-~vI~ADG~~S~vR 202 (502)
+...|.+.+++. +++++.++ +++++.+ +++|+||.+.. +|+.++++|+ -||.|+|.++.-.
T Consensus 215 ~~~~l~~~~~~~-gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~N~ 278 (584)
T PRK12835 215 LVARLRLALKDA-GVPLWLDSPMTELITDPDGAVVGAVVER-EGRTLRIGARRGVILATGGFDHDM 278 (584)
T ss_pred HHHHHHHHHHhC-CceEEeCCEEEEEEECCCCcEEEEEEEe-CCcEEEEEeceeEEEecCcccCCH
Confidence 444566676665 89999998 9999886 57899998854 6667778897 5999999998643
No 145
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.83 E-value=5.9e-08 Score=103.13 Aligned_cols=113 Identities=19% Similarity=0.324 Sum_probs=77.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
...+||+||||||+|+++|..|++.|++|+|+|+.. .+... + ..++. .++ ..+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~--GG~~~---~------~~~~~----------~~~-----~~~- 261 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF--GGQVL---D------TMGIE----------NFI-----SVP- 261 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--CCeee---c------cCccc----------ccC-----CCC-
Confidence 457999999999999999999999999999997641 11110 0 00000 000 000
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
...-..+.+.|.+.+++. +++++.++ ++++..+++. ..+...+|++ +++|.||.|+|.++
T Consensus 262 --~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~~~~---~~V~~~~g~~--i~a~~vViAtG~~~ 322 (517)
T PRK15317 262 --ETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPAAGL---IEVELANGAV--LKAKTVILATGARW 322 (517)
T ss_pred --CCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCe---EEEEECCCCE--EEcCEEEECCCCCc
Confidence 122346788888888888 79999876 8888776543 3344566664 56999999999976
No 146
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.82 E-value=5.7e-08 Score=112.09 Aligned_cols=155 Identities=24% Similarity=0.280 Sum_probs=91.3
Q ss_pred CCCCCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc---c--------------h---hhhcccc---
Q 010765 47 NAGKNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV---D--------------C---VEEIDAQ--- 103 (502)
Q Consensus 47 ~~~~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~---~--------------~---l~~l~~~--- 103 (502)
..+.++.++||||||+|.||+++|+.+++.|.+|+|+||.+.....+. + . .+.+...
T Consensus 402 ~~i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~ 481 (1167)
T PTZ00306 402 KRIAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHL 481 (1167)
T ss_pred cccccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHH
Confidence 344567889999999999999999999999999999999865433211 0 0 0000000
Q ss_pred --------------------------ccceEEEEECCceeeeeccCcCC-CCCCcceeec-chHHHHHHHHHHHcC--CC
Q 010765 104 --------------------------QVLGYALFKDGKSTRLSYPLEKF-HADVSGRSFH-NGRFIQRMREKAASL--PN 153 (502)
Q Consensus 104 --------------------------~~~g~~~~~~g~~~~~~~~~~~~-~~~~~g~~i~-r~~l~~~L~~~a~~~--~~ 153 (502)
...|+.+..........++.... .....+.... -..+...|.+.+++. .+
T Consensus 482 ~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~g 561 (1167)
T PTZ00306 482 SGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGR 561 (1167)
T ss_pred hccCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCC
Confidence 00011000000000000000000 0000000001 123455666665542 48
Q ss_pred eEEEece-EEEEEeeC---------CeEEEEEEEeC---CCcEEEEecCEEEEecCCCchh
Q 010765 154 VRLEQGT-VTSLLEEN---------GTIKGVQYKTK---DGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 154 v~i~~~~-v~~~~~~~---------~~v~~v~~~~~---~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+++++++ +++++.++ ++|+||.+... +|+.+.+.|+-||.|+|.++.-
T Consensus 562 v~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 562 VTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSND 622 (1167)
T ss_pred cEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccC
Confidence 9999998 99998763 27999998876 8888889999999999999864
No 147
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.81 E-value=6e-08 Score=99.63 Aligned_cols=134 Identities=22% Similarity=0.370 Sum_probs=75.9
Q ss_pred EEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc-------ch-----hh----hccccc--cce-EEEEECCceee
Q 010765 58 IIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV-------DC-----VE----EIDAQQ--VLG-YALFKDGKSTR 118 (502)
Q Consensus 58 vIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~-------~~-----l~----~l~~~~--~~g-~~~~~~g~~~~ 118 (502)
+|||||++|+++|+.|+++|.+|+|+||.+.....+. .. .+ ...... ... +..+.......
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999876543221 00 00 000000 000 00000000000
Q ss_pred -e-eccCcCCCCCCcceee----cchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEE
Q 010765 119 -L-SYPLEKFHADVSGRSF----HNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 119 -~-~~~~~~~~~~~~g~~i----~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~v 191 (502)
+ .... .......+..+ ....+.+.|.+.+++. +++++.++ |+++.++++.+ .+ .. ++++ +.+|.|
T Consensus 81 ~~~~~Gv-~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~~~~~-~v--~~-~~~~--i~ad~V 152 (400)
T TIGR00275 81 FFESLGL-ELKVEEDGRVFPCSDSAADVLDALLNELKEL-GVEILTNSKVKSIKKDDNGF-GV--ET-SGGE--YEADKV 152 (400)
T ss_pred HHHHcCC-eeEEecCCEeECCCCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCeE-EE--EE-CCcE--EEcCEE
Confidence 0 0000 00000011222 2356788888888887 89999987 88887665532 23 33 3443 569999
Q ss_pred EEecCCCc
Q 010765 192 IVCDGCFS 199 (502)
Q Consensus 192 I~ADG~~S 199 (502)
|.|+|..|
T Consensus 153 IlAtG~~s 160 (400)
T TIGR00275 153 ILATGGLS 160 (400)
T ss_pred EECCCCcc
Confidence 99999988
No 148
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.80 E-value=1.5e-07 Score=101.26 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEec-CEEEEecCCCchhhhhh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYA-PLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~a-d~vI~ADG~~S~vR~~l 205 (502)
.+...|.+.+++. +++++.++ ++++..++++|.+|.+.. +|+..++.| +-||.|.|.++.-.+.+
T Consensus 222 ~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~~g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 222 ALIGRLLYSLRAR-GVRILTQTDVESLETDHGRVIGATVVQ-GGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEeeCCEEEEEEEec-CCeEEEEEccceEEECCCCcccCHHHH
Confidence 4677788888887 89999998 999987788899988754 566666776 78999999999864443
No 149
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.77 E-value=3.3e-06 Score=89.70 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l 205 (502)
..+.+.|.+.+++. |++++.++ |+++..+++++++|+ ..+|+. +.||.||.|-+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~V~--~~~g~~--~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDL-GGELRLNAEVIRIETEGGRATAVH--LADGER--LDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHC-CCEEEECCeEEEEEeeCCEEEEEE--ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence 45778888888887 79999997 999988777765554 466765 45999999988776665544
No 150
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.76 E-value=9e-08 Score=99.28 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=73.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCe-EEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCC
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHAD 129 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~-v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 129 (502)
.+..+||+|||||++|+++|+.|.+.|++ ++|+||+....+ .+..- ...+.... .......++...+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg----~W~~~---ry~~l~~~--~p~~~~~~~~~p~~-- 73 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG----TWRYN---RYPGLRLD--SPKWLLGFPFLPFR-- 73 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC----cchhc---cCCceEEC--CchheeccCCCccC--
Confidence 35678999999999999999999999998 999999965432 22211 11122111 11111222222221
Q ss_pred CcceeecchHHHHHHHHHHHcCCC-eEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 130 VSGRSFHNGRFIQRMREKAASLPN-VRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 130 ~~g~~i~r~~l~~~L~~~a~~~~~-v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
.....-.+..+...+.+.++.... -++.+.+ |..+..+++.- ..++..++|...++.+|.||.|+|..|
T Consensus 74 ~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~-~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 74 WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTK-RWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCC-eEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 000001112245555555554411 2345554 44444333211 223334444433367999999999865
No 151
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.73 E-value=1.2e-07 Score=100.70 Aligned_cols=113 Identities=20% Similarity=0.306 Sum_probs=76.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
...+||+||||||+|+++|..|++.|++|+|+|.... +... .. .++. .+ ...+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G--G~~~---~~------~~~~----------~~-----~~~~- 262 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG--GQVK---DT------VGIE----------NL-----ISVP- 262 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC--Cccc---cC------cCcc----------cc-----cccC-
Confidence 5579999999999999999999999999999975321 1110 00 0000 00 0000
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
......+...+.+.+++. +++++.++ |+++..+++. ..+..++|+. +.+|.+|.|+|.+.
T Consensus 263 --~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~~~~---~~v~~~~g~~--i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 263 --YTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETEDGL---IVVTLESGEV--LKAKSVIVATGARW 323 (515)
T ss_pred --CCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEecCCe---EEEEECCCCE--EEeCEEEECCCCCc
Confidence 012345777788888777 89998876 8888765543 3344566764 56999999999864
No 152
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.73 E-value=1.4e-07 Score=101.08 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.+||+||||||+||++|..|++.|++|+|+|++.. .+.. .. ... ...++. ..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-GG~~----------------~~-~~~--i~~~pg--------~~ 55 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-GGQI----------------TI-TSE--VVNYPG--------IL 55 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CceE----------------Ee-ccc--cccCCC--------Cc
Confidence 58999999999999999999999999999998631 1100 00 000 000110 00
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.+....+...+++.++.. +++++.++|+++..+++. ..+...+|+ +.++.+|.|+|++..
T Consensus 56 ~~~~~~l~~~l~~~~~~~-gv~~~~~~V~~i~~~~~~---~~V~~~~g~---~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 56 NTTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFDGDI---KTIKTARGD---YKTLAVLIATGASPR 115 (555)
T ss_pred CCCHHHHHHHHHHHHHHc-CCEEeccEEEEEEecCCE---EEEEecCCE---EEEeEEEECCCCccC
Confidence 122345677777777777 788887778887765432 223344443 458999999999764
No 153
>PRK07233 hypothetical protein; Provisional
Probab=98.72 E-value=1.7e-06 Score=89.99 Aligned_cols=38 Identities=39% Similarity=0.492 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI 93 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~ 93 (502)
+|+|||||++||++|..|+++|++|+|+|++....+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 58999999999999999999999999999998766543
No 154
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=1.2e-07 Score=97.15 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=84.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCc----eeeeeccCcCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGK----STRLSYPLEKFHA 128 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~----~~~~~~~~~~~~~ 128 (502)
...+|+||||||+||++|..|.++|++|+++||.....+ +|.--.........++..-+ ..-..|+.-.+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG----lW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG----LWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc----eEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 456999999999999999999999999999999865432 22111000000000000000 0001111111111
Q ss_pred CCcceeecchHHHHHHHHHHHcCCCe--EEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 129 DVSGRSFHNGRFIQRMREKAASLPNV--RLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 129 ~~~g~~i~r~~l~~~L~~~a~~~~~v--~i~~~~-v~~~~~~~-~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
...-+.-++..+.+.|.+.|+.. +. .+.+++ +..+...+ +.+ .|...+..+...+.-+|.||.|.|-+.
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F-~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHF-DLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhc-ChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcC
Confidence 11122345668999999999887 43 578887 88888776 555 365555444222334999999999883
No 155
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.71 E-value=2.4e-07 Score=104.54 Aligned_cols=144 Identities=20% Similarity=0.286 Sum_probs=84.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC-ccc----ch----h------h----hc------------
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD-RIV----DC----V------E----EI------------ 100 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~-r~~----~~----l------~----~l------------ 100 (502)
..++||+|||||.+||++|+.+++.|.+|+|+||...... ... ++ . + .+
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 4678999999999999999999999999999999864211 000 00 0 0 00
Q ss_pred ------------cccccceEEEEE--CCceeeeeccCcCCCCCCccee--e-cchHHHHHHHHHHHcC---CCeEEEece
Q 010765 101 ------------DAQQVLGYALFK--DGKSTRLSYPLEKFHADVSGRS--F-HNGRFIQRMREKAASL---PNVRLEQGT 160 (502)
Q Consensus 101 ------------~~~~~~g~~~~~--~g~~~~~~~~~~~~~~~~~g~~--i-~r~~l~~~L~~~a~~~---~~v~i~~~~ 160 (502)
..-...|+.+.. +|+.....+ ... ..+. . .-..+...|.+.+.+. .++.+....
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~-----~~~-~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~ 164 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRV-----HRS-GSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRL 164 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeee-----ccC-CCccccCCCchhHHHHHHHHHHHhhhcCCcEEEece
Confidence 000001111111 011000000 000 0000 0 1123444555554433 267777776
Q ss_pred -EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 161 -VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 161 -v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
++++..+++++.||.+.+ .+|+.+.+.|+-||.|+|..+.+
T Consensus 165 ~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 165 MPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred eeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccccC
Confidence 778887788899988654 67887788999999999998864
No 156
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.71 E-value=2.2e-07 Score=99.66 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeC---CeEEEEEEEe-CCCcEEEEecCEEEEecCCCch
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEEN---GTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~---~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.+...|...+.+. +++++.++ ++++..++ +++.||.+.+ .+|+...+.|+.||.|+|..+.
T Consensus 127 ~~~r~l~~~l~~~-~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 127 SYKPIVAEAAKNA-LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hHHHHHHHHHHhC-CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 4455565555554 57888887 99998754 6899998754 5777777899999999999874
No 157
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.69 E-value=1e-07 Score=96.03 Aligned_cols=143 Identities=26% Similarity=0.378 Sum_probs=90.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc---------------------------------chhhhccc
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV---------------------------------DCVEEIDA 102 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~---------------------------------~~l~~l~~ 102 (502)
||+|||+|+|||++|+.|++. ++|+|+-|.+-....+. +..+.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 99999999865421111 01111100
Q ss_pred c--------ccceEEEEECCceeeeeccCcCCCCCCcceeec-----chHHHHHHHHHHHcCCCeEEEece-EEEEEeeC
Q 010765 103 Q--------QVLGYALFKDGKSTRLSYPLEKFHADVSGRSFH-----NGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN 168 (502)
Q Consensus 103 ~--------~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i~-----r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~ 168 (502)
+ ...|..+-.+.+ ..+.+..+.-.+ .-+.+| -..+...|.++++++|++++.++. +.++..++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~-g~~~lt~EggHS--~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~ 164 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDED-GRLHLTREGGHS--RRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIED 164 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCC-CceeeeeecccC--CceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcC
Confidence 0 001221111100 001111100000 011111 235788999999999999999997 88888887
Q ss_pred C-eEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 169 G-TIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 169 ~-~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
+ .+.||.+...+++...++++.||.|+|.-+.+=
T Consensus 165 ~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 165 GIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred CceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 7 555888876655667789999999999988653
No 158
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.69 E-value=1.9e-07 Score=98.01 Aligned_cols=135 Identities=20% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc--chhhh--cc--ccccceEEEEECCceeeeeccCcC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV--DCVEE--ID--AQQVLGYALFKDGKSTRLSYPLEK 125 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~--~~l~~--l~--~~~~~g~~~~~~g~~~~~~~~~~~ 125 (502)
+..+||+||||||+|+++|+.|++.|.+|+|+||+....+... +|+.. +. ......+. .... ...++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~---~~~~-~~~~~~-- 76 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFN---QNPL-YSSYRV-- 76 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHh---hhhh-hcccCC--
Confidence 5569999999999999999999999999999999644332111 11100 00 00000000 0000 000000
Q ss_pred CCCCCcc-eeecc-----hHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 126 FHADVSG-RSFHN-----GRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 126 ~~~~~~g-~~i~r-----~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
...... ....+ ..+...+.+.+.+. +++++.+++..+. .. .+++...+|+..++++|.||.|+|...
T Consensus 77 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~~~--~~---~~~v~~~~g~~~~~~~d~lviATGs~p 149 (461)
T PRK05249 77 -KLRITFADLLARADHVINKQVEVRRGQYERN-RVDLIQGRARFVD--PH---TVEVECPDGEVETLTADKIVIATGSRP 149 (461)
T ss_pred -cCccCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEec--CC---EEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 000000 00000 11223344445555 8999998865442 23 244555667655678999999999764
No 159
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.68 E-value=1.7e-07 Score=98.59 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
..|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4699999999999999999999999999999986
No 160
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.67 E-value=1.4e-07 Score=99.00 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.+|||+||||||+|+++|..|++.|.+|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35999999999999999999999999999999874
No 161
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.67 E-value=1.2e-07 Score=98.82 Aligned_cols=35 Identities=43% Similarity=0.608 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
++|||+||||||+|+++|+.|+++|.+|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 35899999999999999999999999999999974
No 162
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.67 E-value=1e-07 Score=100.95 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=89.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc----c---hh-----------hhccccccc------
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV----D---CV-----------EEIDAQQVL------ 106 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~----~---~l-----------~~l~~~~~~------ 106 (502)
...++||||||||.|||.+|+.+++.|.+|+|+||.....+.+. + .+ +..-...+.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~ 82 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLG 82 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcC
Confidence 45679999999999999999999999999999999866543332 0 00 000000000
Q ss_pred ----------------------eEEEE--ECCceeeeeccCcCCCCCCcceeec--chHHHHHHHHHHHcCCCeEEEece
Q 010765 107 ----------------------GYALF--KDGKSTRLSYPLEKFHADVSGRSFH--NGRFIQRMREKAASLPNVRLEQGT 160 (502)
Q Consensus 107 ----------------------g~~~~--~~g~~~~~~~~~~~~~~~~~g~~i~--r~~l~~~L~~~a~~~~~v~i~~~~ 160 (502)
|..+. .+|....- +....+.....+.-. -..+...|.+.+.+..++++..+.
T Consensus 83 dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r--~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~ 160 (562)
T COG1053 83 DQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQR--RFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEY 160 (562)
T ss_pred CHHHHHHHHHhhHHHHHHHHHhCCCcccCCCcccccc--ccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhh
Confidence 00000 00000000 000000000001111 134778888888886567777777
Q ss_pred -EEEEEeeCCe-EEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 161 -VTSLLEENGT-IKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 161 -v~~~~~~~~~-v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
++++..++++ +.||...+ .+|+.+.++++-||.|+|....+
T Consensus 161 ~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~ 204 (562)
T COG1053 161 FVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRL 204 (562)
T ss_pred hhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEE
Confidence 8898866544 77777655 67887778899999999998844
No 163
>PRK14694 putative mercuric reductase; Provisional
Probab=98.66 E-value=3.2e-07 Score=96.40 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
|...++||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 34567999999999999999999999999999999863
No 164
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.65 E-value=9.7e-08 Score=89.18 Aligned_cols=146 Identities=18% Similarity=0.268 Sum_probs=93.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC------CeEEEEecCCCCCCcc---c------------------------chhhhcc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDG------RRVHVIERDVTEPDRI---V------------------------DCVEEID 101 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G------~~v~lvEr~~~~~~r~---~------------------------~~l~~l~ 101 (502)
..|+|||||+.|.++|++|++++ +.++|+|...-..... . ++-++.+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd 90 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD 90 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence 68999999999999999999998 8999999985432211 1 1112222
Q ss_pred ccccceEEEEE------C---CceeeeeccC-----------cCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEeceE
Q 010765 102 AQQVLGYALFK------D---GKSTRLSYPL-----------EKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGTV 161 (502)
Q Consensus 102 ~~~~~g~~~~~------~---g~~~~~~~~~-----------~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v 161 (502)
-....+|+... + ......+... ...+.......+|...|.+.+...+++.++|++.+|+|
T Consensus 91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gkv 170 (380)
T KOG2852|consen 91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGKV 170 (380)
T ss_pred CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEeee
Confidence 22233332110 1 0000000000 00111122347888999999999999998999999999
Q ss_pred EEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 162 TSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 162 ~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.++..+..++.++....+.+.......+.+|.+-|.++.
T Consensus 171 ~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 171 KEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEeecccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 999766676655544333343444568899999999975
No 165
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.64 E-value=2.1e-07 Score=97.73 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.+|||+||||||+|+++|..|+++|.+|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46899999999999999999999999999999875
No 166
>PLN02507 glutathione reductase
Probab=98.63 E-value=1.2e-07 Score=100.03 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=32.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEec
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr 85 (502)
..+|||+||||||+|+.+|..+++.|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4579999999999999999999999999999997
No 167
>PLN02612 phytoene desaturase
Probab=98.63 E-value=1e-05 Score=86.83 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=34.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
....+|+|||||++||++|+.|+++|++|+|+|++...
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 44679999999999999999999999999999997543
No 168
>PRK10262 thioredoxin reductase; Provisional
Probab=98.62 E-value=5.6e-07 Score=89.80 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=72.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
+...||+||||||+|+++|..|+++|++|+++|+.. ..+... .. .. ...++. .+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~-~gg~~~----~~-------------~~--~~~~~~-----~~- 57 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLT----TT-------------TE--VENWPG-----DP- 57 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec-CCCcee----cC-------------ce--ECCCCC-----CC-
Confidence 457899999999999999999999999999999652 221110 00 00 000110 00
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
..++-..+.+.+.+.+... +++++.++++++...++. +++..+++ ++.+|.||.|.|.+.
T Consensus 58 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~---~~v~~~~~---~~~~d~vilAtG~~~ 117 (321)
T PRK10262 58 -NDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQNRP---FRLTGDSG---EYTCDALIIATGASA 117 (321)
T ss_pred -CCCCHHHHHHHHHHHHHHC-CCEEEeeEEEEEEecCCe---EEEEecCC---EEEECEEEECCCCCC
Confidence 0122334566777777766 567777777777665553 23333333 356999999999874
No 169
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.62 E-value=2.7e-06 Score=85.33 Aligned_cols=43 Identities=40% Similarity=0.523 Sum_probs=38.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~ 94 (502)
....||||||||.+||++|+.|.+.|++|+|+|-+.....|.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 4578999999999999999999999999999999977766543
No 170
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=1.4e-07 Score=99.03 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|||+||||||+|+++|..+++.|.+|+|+|++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5899999999999999999999999999999753
No 171
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.60 E-value=2.8e-07 Score=87.98 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=57.7
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEeceEEEEEee----------CC-------eEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGTVTSLLEE----------NG-------TIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~----------~~-------~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
++.-.|...+++.+..+ |+.+..|.|+.++.+ ++ ++.+|.++..|+....++++++|.|.|+
T Consensus 240 fdpw~LLs~~rrk~~~l-Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITL-GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA 318 (509)
T ss_pred cCHHHHHHHHHHHhhhh-cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence 66678899999999998 899999998888654 23 4556777777777777899999999999
Q ss_pred Cch-hhhhhcCC
Q 010765 198 FSN-LRRSLCKP 208 (502)
Q Consensus 198 ~S~-vR~~l~~~ 208 (502)
+|- |.+..++.
T Consensus 319 ~s~QvArlAgIG 330 (509)
T KOG2853|consen 319 WSGQVARLAGIG 330 (509)
T ss_pred cHHHHHHHhccC
Confidence 984 56666664
No 172
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.58 E-value=5.1e-07 Score=90.75 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=61.4
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCc-hhhhhhcC
Q 010765 131 SGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFS-NLRRSLCK 207 (502)
Q Consensus 131 ~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S-~vR~~l~~ 207 (502)
.|..++.+.|-+.|.+.+.+.+++++++++ |+++.+.+++-..|.+++ .+|+..+++|++|+..-|..| ++-+..|+
T Consensus 174 ~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 174 EGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred CCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 455778889999999999999899999998 999998876634466654 567778899999988888777 34555565
Q ss_pred C
Q 010765 208 P 208 (502)
Q Consensus 208 ~ 208 (502)
+
T Consensus 254 ~ 254 (488)
T PF06039_consen 254 P 254 (488)
T ss_pred h
Confidence 3
No 173
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.56 E-value=8.6e-07 Score=92.82 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEee--C--CeEEEEEEEeCC-CcEE-EEecCEEEEecCCCc
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEE--N--GTIKGVQYKTKD-GQEL-RAYAPLTIVCDGCFS 199 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~--~--~~v~~v~~~~~~-G~~~-~v~ad~vI~ADG~~S 199 (502)
..+..-|.+.++++ ||+++.++ |+++..+ + +.|+++.+...+ ++.+ ....|+||.+.|...
T Consensus 226 eSLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 226 ESLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred hHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 46788889999998 89999998 9998874 3 457888876422 2222 246899999999875
No 174
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.55 E-value=1.4e-06 Score=85.80 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEeCCCc--EEEEecCEEEEecCCCch
Q 010765 140 FIQRMREKAASLPNVRLEQGT-VTSLLEE--NGTIKGVQYKTKDGQ--ELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 140 l~~~L~~~a~~~~~v~i~~~~-v~~~~~~--~~~v~~v~~~~~~G~--~~~v~ad~vI~ADG~~S~ 200 (502)
........+.+.+|++|+.++ |+.+..+ ++++++|++.+.++. ...+.++.||.|-|+-..
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC
Confidence 334444455567799999998 9999665 788999999998877 455679999999997543
No 175
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.55 E-value=4.5e-07 Score=94.56 Aligned_cols=35 Identities=34% Similarity=0.605 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+++||+||||||+|+++|..|++.|.+|+|+||..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 36899999999999999999999999999999975
No 176
>PRK13748 putative mercuric reductase; Provisional
Probab=98.54 E-value=7.9e-07 Score=95.76 Aligned_cols=34 Identities=38% Similarity=0.549 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
.++||+||||||+|+++|..|+++|.+|+|||++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5699999999999999999999999999999987
No 177
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.52 E-value=3.7e-07 Score=84.86 Aligned_cols=38 Identities=42% Similarity=0.584 Sum_probs=34.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR 92 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r 92 (502)
.+|+|||+||+|+++|..|+..|++|+|+||.....+|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGR 39 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR 39 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccc
Confidence 36999999999999999999999999999998665544
No 178
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.52 E-value=5.2e-07 Score=94.25 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
+|||+||||||+|+++|+.+++.|.+|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 179
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.6e-07 Score=95.47 Aligned_cols=139 Identities=26% Similarity=0.395 Sum_probs=90.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC------ccc-----chhhhccccc-cceEEEEECCceeeee
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD------RIV-----DCVEEIDAQQ-VLGYALFKDGKSTRLS 120 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~------r~~-----~~l~~l~~~~-~~g~~~~~~g~~~~~~ 120 (502)
..|||+|||||-||+-+|++.+|.|.+++|+--+...-. .++ .+.+++++-. ..+... ....+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~----D~~~IQ 78 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAA----DKAGIQ 78 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhh----hhcCCc
Confidence 359999999999999999999999999999987754321 111 2333333320 000000 000111
Q ss_pred ccCcCCCCCCc----ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCC-eEEEEEEEeCCCcEEEEecCEEEEec
Q 010765 121 YPLEKFHADVS----GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENG-TIKGVQYKTKDGQELRAYAPLTIVCD 195 (502)
Q Consensus 121 ~~~~~~~~~~~----g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~-~v~~v~~~~~~G~~~~v~ad~vI~AD 195 (502)
+..-..+..|. -..+++......+++.++..+|..++++.|+++..+++ .|.||. +.+|..+ .|+.||.++
T Consensus 79 ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~--t~~G~~~--~a~aVVlTT 154 (621)
T COG0445 79 FRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV--TADGPEF--HAKAVVLTT 154 (621)
T ss_pred hhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE--eCCCCee--ecCEEEEee
Confidence 11111111111 12456667788888889999999999999999988666 477765 5678765 599999999
Q ss_pred CCCc
Q 010765 196 GCFS 199 (502)
Q Consensus 196 G~~S 199 (502)
|-+-
T Consensus 155 GTFL 158 (621)
T COG0445 155 GTFL 158 (621)
T ss_pred cccc
Confidence 9874
No 180
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.51 E-value=5.9e-07 Score=95.02 Aligned_cols=135 Identities=20% Similarity=0.261 Sum_probs=79.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccce----E-EEEECCceeeeeccCcCCCCC-
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLG----Y-ALFKDGKSTRLSYPLEKFHAD- 129 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g----~-~~~~~g~~~~~~~~~~~~~~~- 129 (502)
+|+|||||++||++|..|.+.|++|+++||++..+ ++|..-... ..| + .+..+.......|+ +++.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG----G~W~~~~~~-~~g~~~~y~sl~~n~sk~~~~fs--dfp~p~ 75 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG----GLWRYTENP-EDGRSSVYDSLHTNTSKEMMAFS--DFPFPE 75 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS----GGGCHSTTC-CCSEGGGSTT-B-SS-GGGSCCT--TS-HCC
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC----ccCeeCCcC-CCCccccccceEEeeCchHhcCC--CcCCCC
Confidence 79999999999999999999999999999986543 344211100 000 0 00000000001111 11111
Q ss_pred CcceeecchHHHHHHHHHHHcCCCe--EEEece-EEEEEeeCC-----eEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 130 VSGRSFHNGRFIQRMREKAASLPNV--RLEQGT-VTSLLEENG-----TIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 130 ~~g~~i~r~~l~~~L~~~a~~~~~v--~i~~~~-v~~~~~~~~-----~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
....-.++..+.+.|.+.++.. +. .+++++ |+++...++ ++ .|+. ..+|+..+-.+|.||.|.|.++.
T Consensus 76 ~~p~f~~~~~v~~Yl~~Ya~~f-~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~-~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 76 DYPDFPSHSEVLEYLESYAEHF-GLRKHIRFNTEVVSVERDPDFSATGKW-EVTT-ENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp CCSSSEBHHHHHHHHHHHHHHT-TGGGGEETSEEEEEEEEETTTT-ETEE-EEEE-TTTTEEEEEEECEEEEEE-SSSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCcceEEEccEEeEeeeccccCCCceE-EEEe-ecCCeEEEEEeCeEEEcCCCcCC
Confidence 0112467889999999999876 33 578888 999987542 22 2332 24565555568999999999884
No 181
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.50 E-value=1.7e-07 Score=94.85 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=65.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc--ccchhhhcccccc-c------eEEEEECCcee---eeecc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR--IVDCVEEIDAQQV-L------GYALFKDGKST---RLSYP 122 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r--~~~~l~~l~~~~~-~------g~~~~~~g~~~---~~~~~ 122 (502)
.||+|||||++|+.+|+.|+++|++|+|+|+++..... ..+.+.++..... . ...++.. +.. .+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~-em~~lgsl~~~ 81 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKE-EMRRLGSLIME 81 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHH-HHHHhcchhee
Confidence 49999999999999999999999999999987654211 0111111100000 0 0000000 000 00011
Q ss_pred Cc-CCCCCCcc-eeecchHHHHHHHHHHHcCCCeEEEeceEEEEE
Q 010765 123 LE-KFHADVSG-RSFHNGRFIQRMREKAASLPNVRLEQGTVTSLL 165 (502)
Q Consensus 123 ~~-~~~~~~~g-~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~ 165 (502)
.. ....+..+ ..++|..|.+.|.+.++++|+++++.+.|+++.
T Consensus 82 aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~ 126 (436)
T PRK05335 82 AADAHRVPAGGALAVDREGFSEYVTEALENHPLITVIREEVTEIP 126 (436)
T ss_pred cccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEEccchhccc
Confidence 11 11112222 467888899999999999999999876677775
No 182
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.50 E-value=9.3e-07 Score=90.06 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=62.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc----------c-------chhhhccc--cc--cceEEEEEC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI----------V-------DCVEEIDA--QQ--VLGYALFKD 113 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~----------~-------~~l~~l~~--~~--~~g~~~~~~ 113 (502)
.+|+|||||++|+.+|+.|+++|++|+|+|+++...... + ..++..+. .. ..+......
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~ 80 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITA 80 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeeh
Confidence 489999999999999999999999999999875521110 0 00000000 00 001111110
Q ss_pred CceeeeeccCcCCCCCCc-ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEE
Q 010765 114 GKSTRLSYPLEKFHADVS-GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLL 165 (502)
Q Consensus 114 g~~~~~~~~~~~~~~~~~-g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~ 165 (502)
. .....+.. ...++|..+.+.|.+.+++++++++..+.+.++.
T Consensus 81 a---------d~~~Ipagg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~ 124 (433)
T TIGR00137 81 A---------DRHAVPAGGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIP 124 (433)
T ss_pred h---------hhhCCCCCceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEc
Confidence 0 00111112 3467899999999999999999888876666554
No 183
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.49 E-value=8.3e-07 Score=93.98 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhhc
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLC 206 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l~ 206 (502)
..+.+.|.+.++++ |++++.++ |+++..+++++.+|. ..+|++ +.||.||.|-|....+++.+.
T Consensus 229 ~~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~~~~~~gv~--~~~g~~--~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKH-GGQIRYRARVTKIILENGKAVGVK--LADGEK--IYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCeeeEEEecCCcEEEEE--eCCCCE--EEcCEEEECCChHHHHHHhCC
Confidence 45778888899888 89999998 999987777766665 456764 459999999999888877664
No 184
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.49 E-value=1.9e-07 Score=70.06 Aligned_cols=33 Identities=42% Similarity=0.579 Sum_probs=29.6
Q ss_pred EECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q 010765 59 IVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD 91 (502)
Q Consensus 59 IVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~ 91 (502)
|||||++||++|+.|+++|++|+|+|+++....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 899999999999999999999999999976554
No 185
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.48 E-value=1.9e-07 Score=86.20 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=67.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcceee
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSF 135 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i 135 (502)
||+|||||++|+++|..|++.|++|+|+|+.+................. ..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~-----------------------------~~ 51 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEI-----------------------------AP 51 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHH-----------------------------HH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccc-----------------------------cc
Confidence 7999999999999999999999999999886431110000000000000 00
Q ss_pred cchHHHH----HHHHHHHcCCCeEEEece-EEEEEeeCCeEE--EEEEE-eCCCcEEEEecCEEEEecCCCch
Q 010765 136 HNGRFIQ----RMREKAASLPNVRLEQGT-VTSLLEENGTIK--GVQYK-TKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 136 ~r~~l~~----~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~--~v~~~-~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
....+.. .+.+.+... +++++.++ +.++......+. .+.+. ...++..++.+|+||.|+|..+.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 52 HRHEFLPARLFKLVDQLKNR-GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHHHHHHGHHHHHHHHH-THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred cccccccccccccccccccc-eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 0000110 333333343 78886655 999987776431 11121 23445566789999999996644
No 186
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.47 E-value=2.5e-06 Score=66.36 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=58.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcceee
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSF 135 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i 135 (502)
.|+|||||+.|+-+|..|++.|.+|+|+|+.+...+ .
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-------~------------------------------------ 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-------G------------------------------------ 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-------T------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-------h------------------------------------
Confidence 489999999999999999999999999999864210 0
Q ss_pred cchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEE
Q 010765 136 HNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQY 176 (502)
Q Consensus 136 ~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~ 176 (502)
....+...+.+.+++. |+++++++ +.++..+++++. |++
T Consensus 38 ~~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~~~-V~~ 77 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKR-GVEVHTNTKVKEIEKDGDGVE-VTL 77 (80)
T ss_dssp SSHHHHHHHHHHHHHT-TEEEEESEEEEEEEEETTSEE-EEE
T ss_pred cCHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCEEE-EEE
Confidence 0123455666777776 89999998 999998887643 443
No 187
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.46 E-value=3.4e-05 Score=81.10 Aligned_cols=35 Identities=37% Similarity=0.440 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
+|+|||||++||++|..|++.|++|+|+|+++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999987654
No 188
>PRK06116 glutathione reductase; Validated
Probab=98.46 E-value=1.2e-06 Score=91.70 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
.+|||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3689999999999999999999999999999986
No 189
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.44 E-value=3.6e-06 Score=88.74 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=45.2
Q ss_pred cCCCeEEEece-EEEEEeeC---CeEEEEEEEeC-CCcEEEEecCEEEEecCCCchhhhhhc
Q 010765 150 SLPNVRLEQGT-VTSLLEEN---GTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSNLRRSLC 206 (502)
Q Consensus 150 ~~~~v~i~~~~-v~~~~~~~---~~v~~v~~~~~-~G~~~~v~ad~vI~ADG~~S~vR~~l~ 206 (502)
+.++++++.++ |++++.++ +++.+|.+.+. +|+..+++|+.+|.|.|+--+.|-.|.
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 46689999988 88887653 36888988875 688888999999999998776666553
No 190
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.44 E-value=5.2e-07 Score=85.60 Aligned_cols=147 Identities=20% Similarity=0.376 Sum_probs=88.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc----------------------------------------c
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV----------------------------------------D 95 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~----------------------------------------~ 95 (502)
+|+|||+|.|||+++..+-..|-.|+|+|+......... +
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 899999999999999999998888999999866543222 1
Q ss_pred hhhhccccccce-------EEEEE------CCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCC-eEEEece-
Q 010765 96 CVEEIDAQQVLG-------YALFK------DGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPN-VRLEQGT- 160 (502)
Q Consensus 96 ~l~~l~~~~~~g-------~~~~~------~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~-v~i~~~~- 160 (502)
+++.+....... +.+-. .|.. .+.........++|.-|- ..|...|.+.+.+.|. +++..++
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHS--vpRTHr~s~plppgfei~-~~L~~~l~k~as~~pe~~ki~~nsk 167 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHS--VPRTHRSSGPLPPGFEIV-KALSTRLKKKASENPELVKILLNSK 167 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCC--CCcccccCCCCCCchHHH-HHHHHHHHHhhhcChHHHhhhhcce
Confidence 111111110000 00000 0000 000000011112222110 1344444555555543 4666665
Q ss_pred EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhh
Q 010765 161 VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 161 v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l 205 (502)
|+++.++++.|.+|++-+.+|+...+.++-||-|+|.++.--+.+
T Consensus 168 vv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~l 212 (477)
T KOG2404|consen 168 VVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKEL 212 (477)
T ss_pred eeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHH
Confidence 999999999999999999999987788999999999998653443
No 191
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.42 E-value=2.5e-06 Score=88.83 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEee--CCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEE--NGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~--~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l 205 (502)
.+...|.+.+++. ++++++++ ++++..+ ++.+++|... .++ .+++|+.||.|+|.++.-++.+
T Consensus 124 ~l~~~L~~~a~~~-Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERL-GVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEcCEEEEcCCCcccCHHHH
Confidence 5788888888887 89999998 9998876 4667776642 222 3567999999999998766544
No 192
>PRK06370 mercuric reductase; Validated
Probab=98.42 E-value=2.2e-06 Score=90.10 Aligned_cols=36 Identities=39% Similarity=0.578 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+.++||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 456999999999999999999999999999999863
No 193
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.41 E-value=1.6e-06 Score=91.21 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEec
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr 85 (502)
.+|||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 368999999999999999999999999999998
No 194
>PLN02487 zeta-carotene desaturase
Probab=98.40 E-value=5.1e-05 Score=80.92 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
+..+|+|||||++||++|+.|+++|++|+|+|+++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 34699999999999999999999999999999987654
No 195
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.39 E-value=2.3e-06 Score=89.45 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|||+||||||+|+++|+.|++.|.+|+|+||..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 5899999999999999999999999999999963
No 196
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.38 E-value=1.2e-06 Score=92.10 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
.|||+||||||+|+++|..|++.|.+|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 389999999999999999999999999999993
No 197
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.38 E-value=8.2e-06 Score=83.75 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 198 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~ 198 (502)
++.+.|.+.+++. |++++.++ |+++..+++++..+. ..+|+...+++|.+|.|.|.+
T Consensus 260 rL~~aL~~~l~~~-Gv~I~~g~~V~~v~~~~~~V~~v~--~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERL-GGRIMPGDEVLGAEFEGGRVTAVW--TRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCEEEEEE--eeCCceEEEECCEEEEeCCCc
Confidence 5677888888877 78999987 999987777654433 345666678899999999975
No 198
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.35 E-value=5.9e-06 Score=94.22 Aligned_cols=114 Identities=21% Similarity=0.337 Sum_probs=71.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
..+||+||||||+||++|+.|++.|++|+|+|+.+...+... .... .. .+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~-----------------~~~~----~~---------~g 211 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL-----------------SEAE----TI---------DG 211 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee-----------------cccc----cc---------CC
Confidence 468999999999999999999999999999999855322110 0000 00 00
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-------C---CCcEEEEecCEEEEecCCCc
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-------K---DGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-------~---~G~~~~v~ad~vI~ADG~~S 199 (502)
.+-..+...+.+.+.+.++++++.++ |.++.. ++.+..+.-.. . .+...++++|.||.|+|+.-
T Consensus 212 --~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 212 --KPAADWAAATVAELTAMPEVTLLPRTTAFGYYD-HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred --ccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEec-CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence 11123545566777767679998876 776643 22222121100 0 11223578999999999864
No 199
>PRK14727 putative mercuric reductase; Provisional
Probab=98.34 E-value=5e-06 Score=87.65 Aligned_cols=36 Identities=33% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+.++||+||||||+|+++|..|+++|.+|+|+||+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 356899999999999999999999999999999974
No 200
>PTZ00058 glutathione reductase; Provisional
Probab=98.33 E-value=1.1e-06 Score=93.46 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
...+|||+||||||+|.++|..+++.|.+|+||||+
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 346799999999999999999999999999999987
No 201
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=2.9e-06 Score=89.17 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
++||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 589999999999999999999999999999986
No 202
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.31 E-value=7e-06 Score=86.22 Aligned_cols=129 Identities=26% Similarity=0.324 Sum_probs=72.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc--chh------------hhccccccceEEEEECCceeeeec
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV--DCV------------EEIDAQQVLGYALFKDGKSTRLSY 121 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~--~~l------------~~l~~~~~~g~~~~~~g~~~~~~~ 121 (502)
||+|||||++|+.+|..|++.|.+|+|+||... .+... +|+ +.+......|+..... ....+++
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~-gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~ 80 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL-GGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDD-GEARVDL 80 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC-CCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccC-cccccCH
Confidence 899999999999999999999999999998742 11110 111 1111100111110000 0000000
Q ss_pred cCcCCCCCCcceeec-ch----HHHHHHHHHHHcCCCeEEEeceEEEEE--eeCCeEEEEEEEeCCCcEEEEecCEEEEe
Q 010765 122 PLEKFHADVSGRSFH-NG----RFIQRMREKAASLPNVRLEQGTVTSLL--EENGTIKGVQYKTKDGQELRAYAPLTIVC 194 (502)
Q Consensus 122 ~~~~~~~~~~g~~i~-r~----~l~~~L~~~a~~~~~v~i~~~~v~~~~--~~~~~v~~v~~~~~~G~~~~v~ad~vI~A 194 (502)
+ .... .. .+...+.+.+++. +++++.++++.+. .+.. .+++...+|+..++.+|.||.|
T Consensus 81 ~----------~~~~~~~~~~~~~~~~~~~~l~~~-gV~~~~g~~~~~~~~~~~~---~v~V~~~~g~~~~~~~d~lViA 146 (466)
T PRK07845 81 P----------AVNARVKALAAAQSADIRARLERE-GVRVIAGRGRLIDPGLGPH---RVKVTTADGGEETLDADVVLIA 146 (466)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEeecccCCC---EEEEEeCCCceEEEecCEEEEc
Confidence 0 0000 01 1223344555555 8999999866643 2333 3455566776455789999999
Q ss_pred cCCCch
Q 010765 195 DGCFSN 200 (502)
Q Consensus 195 DG~~S~ 200 (502)
+|....
T Consensus 147 TGs~p~ 152 (466)
T PRK07845 147 TGASPR 152 (466)
T ss_pred CCCCCC
Confidence 998764
No 203
>PLN02546 glutathione reductase
Probab=98.31 E-value=2.1e-06 Score=91.44 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEec
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr 85 (502)
..+|||+||||||+|..+|..+++.|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4469999999999999999999999999999997
No 204
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.28 E-value=6.3e-06 Score=73.01 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=68.0
Q ss_pred EEECCCHHHHHHHHHHhhC-----CCeEEEEecCCCCCCcccch--hh-hccccccceEEEEECCc-eeeeeccCcCC--
Q 010765 58 IIVGAGVAGAALAHTLGKD-----GRRVHVIERDVTEPDRIVDC--VE-EIDAQQVLGYALFKDGK-STRLSYPLEKF-- 126 (502)
Q Consensus 58 vIVGaG~aGl~~A~~La~~-----G~~v~lvEr~~~~~~r~~~~--l~-~l~~~~~~g~~~~~~g~-~~~~~~~~~~~-- 126 (502)
+|||||++|++++..|.++ ..+|+|||+.+......... -+ .+.-.+...+..+.+.. .....+-....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999887 57999999975422212100 00 00000111111111111 00000000000
Q ss_pred --CCCCcceeecchHHHHHHHH----HHHcC-CCeEE--EeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 127 --HADVSGRSFHNGRFIQRMRE----KAASL-PNVRL--EQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 127 --~~~~~g~~i~r~~l~~~L~~----~a~~~-~~v~i--~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
..........|..+-+.|.+ ..+.. .++++ +..+|+++...+++ ..+...+|... .+|.||.|.|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~---~~v~~~~g~~~--~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG---YRVVTADGQSI--RADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc---EEEEECCCCEE--EeCEEEECCCC
Confidence 00011123344433333332 22222 24444 44569999888774 34556788764 59999999995
No 205
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.27 E-value=1.9e-05 Score=82.04 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=50.5
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
...++...+.+.|...|++. |+.+.++. |+++.-.++...+|+ +..|. +++..+|.|.|.+.
T Consensus 181 DG~~DP~~lC~ala~~A~~~-GA~viE~cpV~~i~~~~~~~~gVe--T~~G~---iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASAL-GALVIENCPVTGLHVETDKFGGVE--TPHGS---IETECVVNAAGVWA 243 (856)
T ss_pred CcccCHHHHHHHHHHHHHhc-CcEEEecCCcceEEeecCCcccee--ccCcc---eecceEEechhHHH
Confidence 34678888999999999999 89999988 999987766655555 55565 55999999999986
No 206
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.27 E-value=1.4e-05 Score=76.38 Aligned_cols=38 Identities=39% Similarity=0.708 Sum_probs=34.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
..+.||||||||.+||.+|..|+..|.+|+|+|+....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 45789999999999999999999999999999987543
No 207
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.26 E-value=5.5e-06 Score=86.57 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=66.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
+|+|||||++|+++|..|++.| .+|+|||+++...-..+ +...+..+. +.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~------------~~~~~~~~~-----~~----------- 53 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGAC------------GLPYFVGGF-----FD----------- 53 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecC------------CCceEeccc-----cC-----------
Confidence 6999999999999999999975 58999999853210000 000000000 00
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCch
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
....+.....+.+.+. +++++.++ |+++..++.. |.+.+ .+|+..++.+|++|.|.|.+..
T Consensus 54 --~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~~~---v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 54 --DPNTMIARTPEEFIKS-GIDVKTEHEVVKVDAKNKT---ITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred --CHHHhhcCCHHHHHHC-CCeEEecCEEEEEECCCCE---EEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 0001111122334444 78988765 8888766653 44544 2355555569999999998754
No 208
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.26 E-value=1.1e-05 Score=81.87 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC-ch
Q 010765 136 HNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF-SN 200 (502)
Q Consensus 136 ~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~-S~ 200 (502)
.-.+|.+.|.+.++++ |+++..++ |+++..+++++.+|.. .++...+++||.+|.|.|++ |.
T Consensus 261 ~G~RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~~~~v~~V~t--~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 261 LGIRLEEALKHRFEQL-GGVMLPGDRVLRAEFEGNRVTRIHT--RNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred cHHHHHHHHHHHHHHC-CCEEEECcEEEEEEeeCCeEEEEEe--cCCccceEECCEEEEccCCCcCH
Confidence 3447888899999998 77888885 9998888887765543 34423356799999999999 75
No 209
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.26 E-value=9.8e-07 Score=92.94 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
+.+.+.|.+.++++ |++|+.+. |+++..++++ ++.+...+| ..+.+|.||.+-..
T Consensus 224 ~al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~~g~--g~~~~~~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREH-GGEIRTGAEVSQILVEGGK--GVGVRTSDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHc-CCEEECCCceEEEEEeCCc--ceEEecccc--ceeccceeEecCch
Confidence 35788888899998 89999998 9999988886 556666667 34569998876655
No 210
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.25 E-value=5.1e-06 Score=83.16 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCc-----hhhhhhcCCC
Q 010765 140 FIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFS-----NLRRSLCKPK 209 (502)
Q Consensus 140 l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S-----~vR~~l~~~~ 209 (502)
+.+.++.+.++.-|+.+..|++-.+.+..+.-..|.+.+ -.|+..++.+|+||.+.|.-- .+++.||+..
T Consensus 416 ~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~ 491 (622)
T COG1148 416 DYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQ 491 (622)
T ss_pred cHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCccc
Confidence 455556666644589999999888877665544455544 467777889999999999542 4566666543
No 211
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.23 E-value=9.1e-06 Score=85.21 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|+||||||+|+++|..|++.|.+|+|+||+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999974
No 212
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.23 E-value=3.9e-06 Score=88.33 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
+|||+||||||+|+.+|+.+++.|.+|.|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 213
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.22 E-value=1.2e-05 Score=84.69 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEecC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERD 86 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~-G~~v~lvEr~ 86 (502)
.+|||+||||||+|.++|+.+++. |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 468999999999999999999996 9999999984
No 214
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.22 E-value=7.9e-06 Score=85.15 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=66.7
Q ss_pred cEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 56 DVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
+|+|||||++|+.+|..|++. +.+|+|+|+.+...-..+ +...+..+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~------------~lp~~~~~~~----------------- 53 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC------------ALPYYIGEVV----------------- 53 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccC------------CcchhhcCcc-----------------
Confidence 799999999999999999886 689999999854221000 0000000000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC-CCcEEEEecCEEEEecCCCch
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK-DGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~-~G~~~~v~ad~vI~ADG~~S~ 200 (502)
-.+..+.....+.+.+..+++++.++ |+++..++.. |.+.+. +++..++.+|++|.|.|....
T Consensus 54 -~~~~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~---v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 54 -EDRKYALAYTPEKFYDRKQITVKTYHEVIAINDERQT---VTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred -CCHHHcccCCHHHHHHhCCCEEEeCCEEEEEECCCCE---EEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 00001111111222222379988755 9998876653 445543 345555789999999998764
No 215
>PRK02106 choline dehydrogenase; Validated
Probab=98.20 E-value=2.8e-05 Score=83.62 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=43.5
Q ss_pred HHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 146 EKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 146 ~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
..+.+.+|+++..++ |+.+..+++++++|++...++....+.++-||.|-|+...-
T Consensus 208 ~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP 264 (560)
T PRK02106 208 DPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSP 264 (560)
T ss_pred ccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCH
Confidence 334456789999988 99998887888999988766655556899999999986543
No 216
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=9.5e-06 Score=85.18 Aligned_cols=34 Identities=41% Similarity=0.624 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
.+|||+||||||+|+++|..|++.|.+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4589999999999999999999999999999994
No 217
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.19 E-value=1e-05 Score=77.39 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 198 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~ 198 (502)
++...|..+.++.+ ..+..|. |.+.+-..++|+.+-. .+...+.++||..|.|+|.+
T Consensus 259 Rl~~~L~~~f~~~G-g~~m~Gd~V~~a~~~~~~v~~i~t--rn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLG-GLWMPGDEVKKATCKGGRVTEIYT--RNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcC-ceEecCCceeeeeeeCCeEEEEEe--cccccCCCChhHeeeecccc
Confidence 56777777788874 4555555 9999888888776554 35556667899999999964
No 218
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.19 E-value=7e-06 Score=92.52 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+|||||||||++|..|++.|++|+|+|+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 467999999999999999999999999999999853
No 219
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.18 E-value=1.5e-05 Score=86.21 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
..+|||+|||+||+|.++|+.+++.|.+|+|||++
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34789999999999999999999999999999975
No 220
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.17 E-value=9.5e-06 Score=85.25 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
|||+||||||+|+++|..|++.|.+|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999874
No 221
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.14 E-value=2.7e-05 Score=83.31 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=43.1
Q ss_pred HHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCC-Cch
Q 010765 143 RMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC-FSN 200 (502)
Q Consensus 143 ~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~-~S~ 200 (502)
.....+.+.+|++|+.++ |.++..++++++||++...++......++.||.|-|+ .|+
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP 257 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSP 257 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCH
Confidence 333445556789999998 9999888888899988765433333579999999998 554
No 222
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.14 E-value=6.4e-06 Score=78.17 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCC
Q 010765 50 KNGSPTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVT 88 (502)
Q Consensus 50 ~~~~~~dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~ 88 (502)
...+.+|.+|||||++||+.|..|.-+ +.+|.|+|+..+
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 446789999999999999999988776 999999999754
No 223
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.13 E-value=2e-05 Score=83.46 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 224
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.12 E-value=1.1e-05 Score=83.32 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=33.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+.+||++||||||+|..+|..+++.|.+|.|+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 457999999999999999999999999999999995
No 225
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.11 E-value=3.9e-05 Score=80.59 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=74.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+...+ .
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------~---------------------------------- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-------G---------------------------------- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-------C----------------------------------
Confidence 35899999999999999999999999999999743100 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
....+...+.+.+++. |++++.++ ++++..+++.+ .+...+|+..++.+|.||.|.|..+...
T Consensus 209 --~~~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v---~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 209 --EDAEVSKVVAKALKKK-GVKILTNTKVTAVEKNDDQV---VYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred --CCHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCEE---EEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 0012445566666776 89999997 88887766643 3444556444577999999999877643
No 226
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.10 E-value=9.6e-05 Score=77.74 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=34.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
....+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 34579999999999999999999999999999998654
No 227
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.10 E-value=4.1e-05 Score=78.23 Aligned_cols=105 Identities=19% Similarity=0.320 Sum_probs=74.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+....+.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 180 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL----------------------------------------- 180 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh-----------------------------------------
Confidence 579999999999999999999999999999874311000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch--hhhhhcC
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN--LRRSLCK 207 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~--vR~~l~~ 207 (502)
....+...+.+.+++. |++++.++ +.++..+++. +.+...+|++ +.+|+||.|.|..+. +.+..++
T Consensus 181 -~~~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~~--i~~D~vI~a~G~~p~~~l~~~~gl 249 (377)
T PRK04965 181 -MPPEVSSRLQHRLTEM-GVHLLLKSQLQGLEKTDSG---IRATLDSGRS--IEVDAVIAAAGLRPNTALARRAGL 249 (377)
T ss_pred -CCHHHHHHHHHHHHhC-CCEEEECCeEEEEEccCCE---EEEEEcCCcE--EECCEEEECcCCCcchHHHHHCCC
Confidence 0012345556666666 89999887 8888766553 3344567765 559999999998764 3344443
No 228
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.09 E-value=6.1e-05 Score=73.52 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchhhhhhcCCC
Q 010765 140 FIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRRSLCKPK 209 (502)
Q Consensus 140 l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~ 209 (502)
+-....+-+..+ ++.+..++ |+....+.++.+.+++.+ ++|+..+++||.+..|-|++ |+-+-|+++.
T Consensus 254 isk~~qr~L~kQ-gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr-P~t~GLgle~ 323 (506)
T KOG1335|consen 254 ISKAFQRVLQKQ-GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR-PFTEGLGLEK 323 (506)
T ss_pred HHHHHHHHHHhc-CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc-ccccCCChhh
Confidence 334444445555 89999998 899888776444566665 57778889999999999965 5656666544
No 229
>PRK09897 hypothetical protein; Provisional
Probab=98.08 E-value=4e-05 Score=81.00 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTE 89 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~~ 89 (502)
.+|+|||||++|+++|..|.+.+ ++|+|||+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 47999999999999999998864 589999997544
No 230
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.08 E-value=1.9e-05 Score=88.11 Aligned_cols=36 Identities=42% Similarity=0.573 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 456899999999999999999999999999999854
No 231
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=4.1e-06 Score=87.57 Aligned_cols=43 Identities=37% Similarity=0.482 Sum_probs=39.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~ 94 (502)
.+..+|||||||++||+||..|.+.|++|+|+|.+...++|+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 5568999999999999999999999999999999988877654
No 232
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.07 E-value=4.7e-05 Score=78.97 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
..+.+|||||||.+|+.+|..|.+.+++|+|||+++...-.. ++-... .|
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~--~l~~~~-----------~g----------------- 57 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTP--LLPQTT-----------TG----------------- 57 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhh--hHHHhc-----------cc-----------------
Confidence 445799999999999999999988889999999875321100 000000 00
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEe--------CCCcEEEEecCEEEEecCCCch
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKT--------KDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~--------~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
......+..-+++.+... ++++..++|++++.++..+ .+.. ++|. ++.+|++|.|.|....
T Consensus 58 --~~~~~~~~~~~~~~~~~~-~~~~i~~~V~~Id~~~~~v---~~~~~~~~~~~~~~g~--~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 58 --TLEFRSICEPVRPALAKL-PNRYLRAVVYDVDFEEKRV---KCGVVSKSNNANVNTF--SVPYDKLVVAHGARPN 126 (424)
T ss_pred --CCChHHhHHHHHHHhccC-CeEEEEEEEEEEEcCCCEE---EEecccccccccCCce--EecCCEEEECCCcccC
Confidence 011112233345555544 7899999999998776643 3311 2343 4679999999999753
No 233
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.05 E-value=3.1e-05 Score=81.20 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=34.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
....+|+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 44579999999999999999999999999999998543
No 234
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=5.6e-05 Score=79.51 Aligned_cols=102 Identities=22% Similarity=0.295 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+ ..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-------~~---------------------------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-------NE---------------------------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-------cc----------------------------------
Confidence 4799999999999999999999999999998642110 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ ++++..+++.+ .+.+...+|+..++.+|.||.|.|...+.
T Consensus 212 --d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 212 --DAEVSKEIAKQYKKL-GVKILTGTKVESIDDNGSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred --CHHHHHHHHHHHHHC-CCEEEECCEEEEEEEeCCeE-EEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 012445566666666 89999987 88887655433 24443346765567899999999987665
No 235
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1.4e-05 Score=79.88 Aligned_cols=140 Identities=24% Similarity=0.396 Sum_probs=87.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC------ccc-----chhhhccccccceEEEEECCceeeee
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD------RIV-----DCVEEIDAQQVLGYALFKDGKSTRLS 120 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~------r~~-----~~l~~l~~~~~~g~~~~~~g~~~~~~ 120 (502)
+..|||||||||-||+-+|.+.+|-|-+.+|+-.+...-+ .++ .+++++++..-.--.+.+ ...+.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD---~s~vq 102 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCD---QSGVQ 102 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhh---hhhhh
Confidence 5679999999999999999999999999999988743211 111 233333332000000000 00011
Q ss_pred ccCcCCCCCC--cc--eeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCe-----EEEEEEEeCCCcEEEEecCEE
Q 010765 121 YPLEKFHADV--SG--RSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGT-----IKGVQYKTKDGQELRAYAPLT 191 (502)
Q Consensus 121 ~~~~~~~~~~--~g--~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~-----v~~v~~~~~~G~~~~v~ad~v 191 (502)
|..-.-...| .| ..++|..+...+.+.+...++.+++++.|.++.-.++. +.||.. .+|.. |+|+-|
T Consensus 103 ~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l--~dgt~--v~a~~V 178 (679)
T KOG2311|consen 103 YKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVL--VDGTV--VYAESV 178 (679)
T ss_pred HHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEE--ecCcE--eccceE
Confidence 1111111111 11 35777788888888888888999999998887654322 555553 56765 569999
Q ss_pred EEecCCC
Q 010765 192 IVCDGCF 198 (502)
Q Consensus 192 I~ADG~~ 198 (502)
|..+|-+
T Consensus 179 ilTTGTF 185 (679)
T KOG2311|consen 179 ILTTGTF 185 (679)
T ss_pred EEeeccc
Confidence 9999986
No 236
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.02 E-value=5.2e-05 Score=79.62 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+ .+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------~~--------------------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-------FL--------------------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-------cC---------------------------------
Confidence 35799999999999999999999999999998743110 00
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
...+...|.+.+++. |++++.++ ++++..+++. +.+...+|++ +.+|.||.|.|......
T Consensus 215 ---d~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~~~~---~~v~~~~g~~--i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 215 ---DDEISDALSYHLRDS-GVTIRHNEEVEKVEGGDDG---VIVHLKSGKK--IKADCLLYANGRTGNTD 275 (461)
T ss_pred ---CHHHHHHHHHHHHHc-CCEEEECCEEEEEEEeCCe---EEEEECCCCE--EEeCEEEEeecCCcccc
Confidence 012445566666666 89999987 8888766553 3344556664 56999999999887653
No 237
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.01 E-value=3e-05 Score=79.75 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=64.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC--eEEEEecCCCCCC-cccchhhhccccccceEEEEECCceeeeeccCcCCCCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDVTEPD-RIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADV 130 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~--~v~lvEr~~~~~~-r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 130 (502)
+.+|+|||||++|+++|..|++.|. +|+|+|+.+..+- +. .+...+.. +.. ...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~~~~~~-----------~~~-----------~~~ 59 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLSKSMLL-----------EDS-----------PQL 59 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCCHHHHC-----------CCC-----------ccc
Confidence 3589999999999999999999987 7999998754321 11 00000000 000 000
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 131 SGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 131 ~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
..+.. ... ..+. +++++.++ |+.+..++.. | ...+|++ +.+|.||.|+|....
T Consensus 60 --~~~~~---~~~----~~~~-~i~~~~g~~V~~id~~~~~---v--~~~~g~~--~~yd~LViATGs~~~ 113 (396)
T PRK09754 60 --QQVLP---ANW----WQEN-NVHLHSGVTIKTLGRDTRE---L--VLTNGES--WHWDQLFIATGAAAR 113 (396)
T ss_pred --cccCC---HHH----HHHC-CCEEEcCCEEEEEECCCCE---E--EECCCCE--EEcCEEEEccCCCCC
Confidence 00000 111 2223 89999987 8888765442 2 2356664 569999999998863
No 238
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.00 E-value=6.6e-05 Score=77.61 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=77.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
..-.++|||||+.|+=.|..+++.|.+|+|+|+.+...+ ..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-------~~-------------------------------- 212 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-------GE-------------------------------- 212 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-------cC--------------------------------
Confidence 344699999999999999999999999999999854211 00
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhhcCCC
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPK 209 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~ 209 (502)
..++.+.+.+.+++ .+++++.++ ++.++..++. +.+..++|+..++++|.++.|.|+.-++ +.|+.+.
T Consensus 213 ----D~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~---v~v~~~~g~~~~~~ad~vLvAiGR~Pn~-~~LgLe~ 281 (454)
T COG1249 213 ----DPEISKELTKQLEK-GGVKILLNTKVTAVEKKDDG---VLVTLEDGEGGTIEADAVLVAIGRKPNT-DGLGLEN 281 (454)
T ss_pred ----CHHHHHHHHHHHHh-CCeEEEccceEEEEEecCCe---EEEEEecCCCCEEEeeEEEEccCCccCC-CCCChhh
Confidence 12356667777777 489999998 7777766664 3444555553356699999999976554 4344433
No 239
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.00 E-value=2.6e-05 Score=78.10 Aligned_cols=151 Identities=18% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCC-CeEEEEecCCCCCCcccchhhhcccc--ccceEEE-EEC-CceeeeeccCcCCC-
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDRIVDCVEEIDAQ--QVLGYAL-FKD-GKSTRLSYPLEKFH- 127 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G-~~v~lvEr~~~~~~r~~~~l~~l~~~--~~~g~~~-~~~-g~~~~~~~~~~~~~- 127 (502)
.+|+|+||.||++|++|+.|...+ .+++.+||++...-...=+++....+ ....... ... .....+.|-.....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 479999999999999999999987 89999999875432211111111110 0000000 000 00000000000000
Q ss_pred ---CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCC---eEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 128 ---ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENG---TIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 128 ---~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~---~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.+.......|..+.+.|.-.+.+.+ -.++++. |+++...++ ....|...+.+|+..++.|+-||.|.|..-.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE-
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC
Confidence 0000123568889999988888875 3366776 998876543 2344665557787778889999999995443
Q ss_pred hhhhh
Q 010765 201 LRRSL 205 (502)
Q Consensus 201 vR~~l 205 (502)
+-+.+
T Consensus 161 iP~~~ 165 (341)
T PF13434_consen 161 IPEWF 165 (341)
T ss_dssp --GGG
T ss_pred CCcch
Confidence 43333
No 240
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.97 E-value=3.4e-05 Score=78.39 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=66.2
Q ss_pred cEEEECCCHHHHHHHHHHhhC---CCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 56 DVIIVGAGVAGAALAHTLGKD---GRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~---G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
+|||||||++|+.+|..|.++ +.+|+|||++....-. ..+..+ ..|.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~--~~~~~~-----------~~g~----------------- 50 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS--GMLPGM-----------IAGH----------------- 50 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCccc--chhhHH-----------Hhee-----------------
Confidence 489999999999999999643 6899999987532110 000000 0000
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
....++...+.+.+++. +++++.++|+++..++.. | ..++|++ +.+|+||.|.|+...
T Consensus 51 --~~~~~~~~~~~~~~~~~-gv~~~~~~v~~id~~~~~---V--~~~~g~~--~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 51 --YSLDEIRIDLRRLARQA-GARFVIAEATGIDPDRRK---V--LLANRPP--LSYDVLSLDVGSTTP 108 (364)
T ss_pred --CCHHHhcccHHHHHHhc-CCEEEEEEEEEEecccCE---E--EECCCCc--ccccEEEEccCCCCC
Confidence 00111222233444444 799999889998876653 2 2456664 569999999998764
No 241
>PRK07208 hypothetical protein; Provisional
Probab=97.97 E-value=8.6e-06 Score=85.97 Aligned_cols=40 Identities=38% Similarity=0.440 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD 91 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~ 91 (502)
+...||+|||||++||++|+.|+++|++|+|+|+++..++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3457999999999999999999999999999999876554
No 242
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.96 E-value=8.7e-06 Score=86.23 Aligned_cols=37 Identities=38% Similarity=0.632 Sum_probs=34.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD 91 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~ 91 (502)
.||+|||||++||++|..|++.|++|+|+||+..+.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 5899999999999999999999999999999976654
No 243
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=8.8e-05 Score=77.80 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=72.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-------~----------------------------------- 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-------G----------------------------------- 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-------c-----------------------------------
Confidence 5799999999999999999999999999998743100 0
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
. ...+.+.+.+.+++. |++++.++ ++++..++.. +.+.. +|+..++.+|+||.|.|....+
T Consensus 209 ~-d~e~~~~l~~~L~~~-GI~i~~~~~V~~i~~~~~~---v~~~~-~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 209 E-DEDIAHILREKLEND-GVKIFTGAALKGLNSYKKQ---ALFEY-EGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred c-cHHHHHHHHHHHHHC-CCEEEECCEEEEEEEcCCE---EEEEE-CCceEEEEeCEEEEecCCccCC
Confidence 0 012445566666666 89999987 8888765442 33333 4544457799999999987765
No 244
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.96 E-value=0.00013 Score=76.90 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-.|+|||||..|+-+|..|++.|.+|+|+|+.+.... .
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------~----------------------------------- 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------A----------------------------------- 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------c-----------------------------------
Confidence 5899999999999999999999999999998743110 0
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
. ...+...+.+.+++. |++++.++ ++++..+++.+ .+.+.+.+|++.++.+|.||.|.|.....
T Consensus 222 ~-d~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~~~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 222 A-DEQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTGGKGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred C-CHHHHHHHHHHHHHc-CcEEEeCcEEEEEEEcCCEE-EEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 0 012445555666665 89999987 88988766543 34444445665567899999999987664
No 245
>PLN02576 protoporphyrinogen oxidase
Probab=97.96 E-value=1.1e-05 Score=85.65 Aligned_cols=42 Identities=40% Similarity=0.472 Sum_probs=37.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEecCCCCCCcc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTEPDRI 93 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~-G~~v~lvEr~~~~~~r~ 93 (502)
..++||+|||||++||++|+.|+++ |++|+|+|++....+++
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 4567999999999999999999999 99999999997766543
No 246
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.96 E-value=0.0001 Score=77.52 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+ ..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-------~~--------------------------------- 213 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-------GT--------------------------------- 213 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-------CC---------------------------------
Confidence 45799999999999999999999999999998643110 00
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ ++++..+++.+ .+.+.. .+|+..++.+|.||.|.|.....
T Consensus 214 ---d~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 214 ---DTETAKTLQKALTKQ-GMKFKLGSKVTGATAGADGV-SLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred ---CHHHHHHHHHHHHhc-CCEEEECcEEEEEEEcCCeE-EEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 012345566666666 89999987 88887655543 244433 23444567899999999987654
No 247
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.95 E-value=0.0001 Score=75.81 Aligned_cols=98 Identities=23% Similarity=0.275 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+....+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN----------------------------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh-----------------------------------------
Confidence 479999999999999999999999999999874311100
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
....+...+.+.+++. |++++.++ ++++.. ++. +.+...+|++ +.+|+||.|.|...+.
T Consensus 184 -~~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~-~~~---~~v~l~~g~~--i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 184 -APPPVQRYLLQRHQQA-GVRILLNNAIEHVVD-GEK---VELTLQSGET--LQADVVIYGIGISAND 243 (396)
T ss_pred -cCHHHHHHHHHHHHHC-CCEEEeCCeeEEEEc-CCE---EEEEECCCCE--EECCEEEECCCCChhh
Confidence 0012345566666666 89999987 888865 332 3345567775 5699999999987653
No 248
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=9e-05 Score=77.86 Aligned_cols=100 Identities=15% Similarity=0.241 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+ ..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------~~---------------------------------- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-------GE---------------------------------- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-------cC----------------------------------
Confidence 4799999999999999999999999999999743110 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCC-CcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKD-GQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~-G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. +++++.++ ++++..+++.+ .+...+ |+..++.+|.||.|.|.....
T Consensus 212 --~~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~v---~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 212 --DKEISKLAERALKKR-GIKIKTGAKAKKVEQTDDGV---TVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred --CHHHHHHHHHHHHHc-CCEEEeCCEEEEEEEeCCEE---EEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 012345556666666 89999997 89988766543 333333 444457899999999987654
No 249
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.92 E-value=5.8e-05 Score=76.26 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
...|||||||-+|+.+|..|.++- .+|+||||+....-.. .+-++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p--lL~eva------------------------------ 50 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP--LLYEVA------------------------------ 50 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch--hhhhhh------------------------------
Confidence 468999999999999999999974 9999999986422110 000000
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
...++......-+++.++...++++.+++|++++.+...| .+ +++.+ +.+|++|.|-|....
T Consensus 51 ~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V---~~--~~~~~--i~YD~LVvalGs~~~ 112 (405)
T COG1252 51 TGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKV---TL--ADLGE--ISYDYLVVALGSETN 112 (405)
T ss_pred cCCCChhheeccHHHHhcccCceEEEEEEEEEEcccCCEE---Ee--CCCcc--ccccEEEEecCCcCC
Confidence 0011222233344555554546999999999999887754 33 33333 569999999998764
No 250
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.4e-05 Score=76.80 Aligned_cols=120 Identities=18% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCCCCCCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCC
Q 010765 47 NAGKNGSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKF 126 (502)
Q Consensus 47 ~~~~~~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~ 126 (502)
+.......|||+||||||+|.++|+..+|+|++.-|+-.+-. + ..++.+..+ .+ +..+.
T Consensus 204 e~~~~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG--G---QvldT~~IE---Nf----------Isv~~--- 262 (520)
T COG3634 204 EEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG--G---QVLDTMGIE---NF----------ISVPE--- 262 (520)
T ss_pred HHhhccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC--C---eeccccchh---he----------ecccc---
Confidence 344456789999999999999999999999998766633211 1 222322211 01 00000
Q ss_pred CCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC
Q 010765 127 HADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 198 (502)
Q Consensus 127 ~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~ 198 (502)
..-.+|...|.++.++. .|++.... .+.++.....-.-.+++.++|.... ++-+|.++|++
T Consensus 263 --------teGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLk--aktvIlstGAr 324 (520)
T COG3634 263 --------TEGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLK--ARTVILATGAR 324 (520)
T ss_pred --------ccchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCCccEEEEecCCceec--cceEEEecCcc
Confidence 11235788888888887 68776654 6666553211113556678888654 99999999986
No 251
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=0.00015 Score=76.43 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+ .
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-------~---------------------------------- 218 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-------T---------------------------------- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-------c----------------------------------
Confidence 35899999999999999999999999999998743110 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
....+...+.+.+++. |++++.++ ++++..+ ++++.. +...+|+..++.+|.||.|.|.....
T Consensus 219 --~~~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~~~~~--~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 219 --EDAELSKEVARLLKKL-GVRVVTGAKVLGLTLKKDGGVLI--VAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred --CCHHHHHHHHHHHHhc-CCEEEeCcEEEEEEEecCCCEEE--EEEeCCceEEEEeCEEEEeeCCccCC
Confidence 0012444555666666 89999997 8888642 343322 23356665567899999999987654
No 252
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.90 E-value=1.1e-05 Score=84.35 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=33.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCCCCCc
Q 010765 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEPDR 92 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~~~~r 92 (502)
+|+|||||++||++|+.|++.| ++|+|+|++...+++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 6999999999999999999988 899999998776554
No 253
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.89 E-value=0.00015 Score=77.23 Aligned_cols=96 Identities=26% Similarity=0.324 Sum_probs=73.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||..|+-+|..|+..|.+|+|+++.+... .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------~-------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------A-------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------c--------------------------------
Confidence 489999999999999999999999999999874210 0
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCc
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S 199 (502)
...|.+.+.+.+|++++.++ ++++..+++.+.++.+.+ .+|++.++.+|.++.|.|...
T Consensus 389 ------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 389 ------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 11234445554589999998 888887767777777765 456666788999999999754
No 254
>PLN02268 probable polyamine oxidase
Probab=97.88 E-value=1.5e-05 Score=83.17 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=35.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIV 94 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~ 94 (502)
.+|+|||||++||++|..|.+.|++|+|+|++....+|+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 3799999999999999999999999999999987766543
No 255
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.87 E-value=9.2e-05 Score=74.20 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.....+++.++++ |+++++.+ |++++..++.+.+|. .++|.+ +.+|+||.|-|..+.
T Consensus 174 ~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~~~~~~v~--~~~g~~--i~~~~vvlA~Grsg~ 231 (486)
T COG2509 174 KVVKNIREYLESL-GGEIRFNTEVEDIEIEDNEVLGVK--LTKGEE--IEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHhc-CcEEEeeeEEEEEEecCCceEEEE--ccCCcE--EecCEEEEccCcchH
Confidence 5678889999999 79999998 999998887655444 466765 459999999997763
No 256
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.6e-05 Score=81.18 Aligned_cols=37 Identities=35% Similarity=0.400 Sum_probs=34.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR 92 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r 92 (502)
+|+|+|||+|||+||+.|+.+|++|+|+|+++..+++
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 6999999999999999999999999999999877653
No 257
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00013 Score=66.23 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=79.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
.+...|+|||.||++-++|+.+++...+.+|+|-..... +. .|.......+.+.++.-|.
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~---------i~-----------pGGQLtTTT~veNfPGFPd 65 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG---------IA-----------PGGQLTTTTDVENFPGFPD 65 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC---------cC-----------CCceeeeeeccccCCCCCc
Confidence 445689999999999999999999999999999753211 00 0111111112222333222
Q ss_pred ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC
Q 010765 132 GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 198 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~ 198 (502)
| +.-..|.+.+++...+. |.++...+|.++.......+ +.+ +.+ .+.||-||.|+|+.
T Consensus 66 g--i~G~~l~d~mrkqs~r~-Gt~i~tEtVskv~~sskpF~---l~t-d~~--~v~~~avI~atGAs 123 (322)
T KOG0404|consen 66 G--ITGPELMDKMRKQSERF-GTEIITETVSKVDLSSKPFK---LWT-DAR--PVTADAVILATGAS 123 (322)
T ss_pred c--cccHHHHHHHHHHHHhh-cceeeeeehhhccccCCCeE---EEe-cCC--ceeeeeEEEecccc
Confidence 2 44567899999999998 89999888888876655322 222 222 35699999999974
No 258
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.83 E-value=0.00019 Score=75.52 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=71.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+ ..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-------~~---------------------------------- 213 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-------AA---------------------------------- 213 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-------cC----------------------------------
Confidence 4799999999999999999999999999998743110 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
...+...+.+.+++. ++++.++ ++++..+++.+ .+++.+.+|+..++.+|.||.|.|......
T Consensus 214 --d~~~~~~~~~~l~~~--v~i~~~~~v~~i~~~~~~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 214 --DKDIVKVFTKRIKKQ--FNIMLETKVTAVEAKEDGI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred --CHHHHHHHHHHHhhc--eEEEcCCEEEEEEEcCCEE-EEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 012344455555543 7888887 88887655543 244433334344578999999999887653
No 259
>PRK06370 mercuric reductase; Validated
Probab=97.83 E-value=0.00039 Score=73.04 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+..... .
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-------~--------------------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-------E--------------------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-------c---------------------------------
Confidence 357999999999999999999999999999987431100 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+.+.+.+.+++. |++++.++ +.++..+++.+ .+.+...++. .++.+|.||.|.|.....
T Consensus 211 ---~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~-~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 211 ---DEDVAAAVREILERE-GIDVRLNAECIRVERDGDGI-AVGLDCNGGA-PEITGSHILVAVGRVPNT 273 (463)
T ss_pred ---CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCEE-EEEEEeCCCc-eEEEeCEEEECcCCCcCC
Confidence 012344556666665 89999987 88887765543 3444333332 346799999999987654
No 260
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.83 E-value=1.9e-05 Score=82.96 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=34.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhC----CCeEEEEecCCCCCCc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVTEPDR 92 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~----G~~v~lvEr~~~~~~r 92 (502)
.||+|||||++||++|+.|+++ |++|+|+|+++..+++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 5899999999999999999999 9999999999766543
No 261
>PRK06116 glutathione reductase; Validated
Probab=97.82 E-value=0.00017 Score=75.50 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||+.|+-+|..|++.|.+|+++++.+.... ..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------~~--------------------------------- 206 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-------GF--------------------------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-------cc---------------------------------
Confidence 35799999999999999999999999999998743100 00
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ +.++..++++. +.+...+|++ +.+|.||.|.|.....
T Consensus 207 ---~~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~g~--~~v~~~~g~~--i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 ---DPDIRETLVEEMEKK-GIRLHTNAVPKAVEKNADGS--LTLTLEDGET--LTVDCLIWAIGREPNT 267 (450)
T ss_pred ---CHHHHHHHHHHHHHC-CcEEECCCEEEEEEEcCCce--EEEEEcCCcE--EEeCEEEEeeCCCcCC
Confidence 012344556666666 89999987 99987655431 3344566764 5699999999976543
No 262
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.81 E-value=0.00026 Score=75.33 Aligned_cols=96 Identities=25% Similarity=0.345 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------- 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------- 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC--------------------------------------------
Confidence 489999999999999999999999999999763200
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCc
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S 199 (502)
....+.+.+++..|++++.++ ++++..+++++.+|.+.+ .+|+..++.+|.||.|-|...
T Consensus 389 -----~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 389 -----ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred -----hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 011234444443489999997 888877666776677654 345555678999999999754
No 263
>PLN02785 Protein HOTHEAD
Probab=97.81 E-value=0.0006 Score=73.32 Aligned_cols=36 Identities=42% Similarity=0.561 Sum_probs=32.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+||||||.+|+.+|..|++ +.+|+|+|+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999999999999999999 699999999864
No 264
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.81 E-value=0.00022 Score=74.93 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=71.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+...+. .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~---------------------------------- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-------E---------------------------------- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-------c----------------------------------
Confidence 58999999999999999999999999999987431100 0
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ ++++..+++.+ .+.+...++ ..++.+|.||.|.|.....
T Consensus 206 --d~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~~~~~-~v~~~~~~~-~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 206 --EPEISAAVEEALAEE-GIEVVTSAQVKAVSVRGGGK-IITVEKPGG-QGEVEADELLVATGRRPNT 268 (463)
T ss_pred --CHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCEE-EEEEEeCCC-ceEEEeCEEEEeECCCcCC
Confidence 012334555566665 89999997 88887655432 344433223 2357799999999976654
No 265
>PLN02507 glutathione reductase
Probab=97.78 E-value=0.00025 Score=75.04 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-------~~---------------------------------- 242 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-------GF---------------------------------- 242 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-------cc----------------------------------
Confidence 4799999999999999999999999999998742110 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ +.++..+++. +.+...+|++ +.+|.||.|.|.....
T Consensus 243 --d~~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~~~~---~~v~~~~g~~--i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 243 --DDEMRAVVARNLEGR-GINLHPRTNLTQLTKTEGG---IKVITDHGEE--FVADVVLFATGRAPNT 302 (499)
T ss_pred --CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEeCCe---EEEEECCCcE--EEcCEEEEeecCCCCC
Confidence 012344555566666 89999997 8888766554 3344556664 5699999999987665
No 266
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.78 E-value=0.00038 Score=75.03 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
....+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 34568999999999999999999999999999987543
No 267
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.77 E-value=2.7e-05 Score=80.51 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=36.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD 91 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~ 91 (502)
++++||||||+|.+||.+|..|++.|.+|+++||+...++
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 3579999999999999999999999999999999966543
No 268
>PLN02568 polyamine oxidase
Probab=97.77 E-value=3.3e-05 Score=82.10 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=36.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCC-----CeEEEEecCCCCCCcc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDG-----RRVHVIERDVTEPDRI 93 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G-----~~v~lvEr~~~~~~r~ 93 (502)
+...||+|||||++||++|..|++.| ++|+|+|++....+++
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeE
Confidence 44579999999999999999999888 9999999997766543
No 269
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.76 E-value=3.3e-05 Score=78.04 Aligned_cols=36 Identities=42% Similarity=0.567 Sum_probs=32.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
+||+|||||++|+++|..|++.|.+|+|+|++...+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 699999999999999999999999999999975443
No 270
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.75 E-value=0.0001 Score=74.61 Aligned_cols=35 Identities=40% Similarity=0.431 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..+|+|||||++|+.+|..|++.|++|+|+|+.+.
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 45899999999999999999999999999999754
No 271
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=7e-05 Score=71.71 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=68.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC--cccchhhhccccccceEEEEECC------cee---eeecc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD--RIVDCVEEIDAQQVLGYALFKDG------KST---RLSYP 122 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~--r~~~~l~~l~~~~~~g~~~~~~g------~~~---~~~~~ 122 (502)
...|.|||||.||.-+|+.++++|++|.|+|-++.... .-.+-+-++-.....+-....+. +.. .+-..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii~ 82 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLIIE 82 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHhh
Confidence 45799999999999999999999999999999854321 11111111111100000000000 000 00000
Q ss_pred CcCCCCCCc--ceeecchHHHHHHHHHHHcCCCeEEEeceEEEEEe
Q 010765 123 LEKFHADVS--GRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLE 166 (502)
Q Consensus 123 ~~~~~~~~~--g~~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~ 166 (502)
..+...-|. ...++|..|-+.+.+.++++|.|+++.+.|+.+-.
T Consensus 83 ~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~ 128 (439)
T COG1206 83 AADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP 128 (439)
T ss_pred hhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCC
Confidence 111111122 26899999999999999999999999888777754
No 272
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.74 E-value=0.0004 Score=72.42 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||++|+.+|..|++.|.+|+|+|+.+...++.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~---------------------------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE---------------------------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC----------------------------------------
Confidence 3479999999999999999999999999999974311000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ ++++..+++. +.+.. +|+ ++.+|.||.|.|.....
T Consensus 197 ---~~~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~~~~---v~v~~-~g~--~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 197 ---EPSVAALAKQYMEED-GITFLLNAHTTEVKNDGDQ---VLVVT-EDE--TYRFDALLYATGRKPNT 255 (438)
T ss_pred ---CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEecCCE---EEEEE-CCe--EEEcCEEEEeeCCCCCc
Confidence 012344555666666 89999987 8888765543 33333 344 35699999999987653
No 273
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.73 E-value=0.00033 Score=73.66 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=72.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+...+ ..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------~~---------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------GE---------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------CC----------------------------------
Confidence 4799999999999999999999999999998743111 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
-..+...+.+.+++. |++++.++ ++++..+++. +.+...+|++ +.+|.||.|.|......
T Consensus 217 --d~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~---~~v~~~~g~~--l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 217 --DADAAEVLEEVFARR-GMTVLKRSRAESVERTGDG---VVVTLTDGRT--VEGSHALMAVGSVPNTA 277 (466)
T ss_pred --CHHHHHHHHHHHHHC-CcEEEcCCEEEEEEEeCCE---EEEEECCCcE--EEecEEEEeecCCcCCC
Confidence 011344556666666 89999887 8888766554 3344556764 56999999999887653
No 274
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.73 E-value=3.5e-05 Score=80.74 Aligned_cols=36 Identities=33% Similarity=0.387 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD 91 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~ 91 (502)
+|+|||||++||++|+.|+++|++|+|+|+++...+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999865443
No 275
>PRK07846 mycothione reductase; Reviewed
Probab=97.73 E-value=0.00036 Score=73.00 Aligned_cols=98 Identities=27% Similarity=0.393 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... ...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------~~~--------------------------------- 205 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------RHL--------------------------------- 205 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------ccc---------------------------------
Confidence 3589999999999999999999999999999874311 000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+ ..+.+.+.+.. +. +++++.++ ++++..+++. +.+...+|++ +.+|.||.|.|.....
T Consensus 206 --d-~~~~~~l~~l~-~~-~v~i~~~~~v~~i~~~~~~---v~v~~~~g~~--i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 206 --D-DDISERFTELA-SK-RWDVRLGRNVVGVSQDGSG---VTLRLDDGST--VEADVLLVATGRVPNG 264 (451)
T ss_pred --C-HHHHHHHHHHH-hc-CeEEEeCCEEEEEEEcCCE---EEEEECCCcE--eecCEEEEEECCccCc
Confidence 0 01223333322 33 69998887 8888766553 3444556664 5699999999987654
No 276
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.72 E-value=0.00032 Score=73.37 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=71.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+... ..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------~~~--------------------------------- 205 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------RSF--------------------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------ccc---------------------------------
Confidence 3589999999999999999999999999999874311 000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+.+.+.+.+++. |++++.++ ++++..+++.. +.+...+|+ .++.+|.||.|.|.....
T Consensus 206 ---d~~~~~~~~~~l~~~-gI~i~~~~~v~~i~~~~~~~--~~v~~~~g~-~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 206 ---DSMISETITEEYEKE-GINVHKLSKPVKVEKTVEGK--LVIHFEDGK-SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred ---CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEeCCce--EEEEECCCc-EEEEcCEEEEeeCCCcCc
Confidence 012344555666665 89999987 88887654432 233344563 246799999999987654
No 277
>PRK07846 mycothione reductase; Reviewed
Probab=97.72 E-value=0.00019 Score=75.07 Aligned_cols=32 Identities=25% Similarity=0.535 Sum_probs=27.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|||+||||||+|.++|.. +.|.+|.|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3899999999999998866 4699999999863
No 278
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.72 E-value=0.00033 Score=73.21 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=70.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... .+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------~~---------------------------------- 205 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-------GF---------------------------------- 205 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-------cc----------------------------------
Confidence 4699999999999999999999999999998643100 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ +.++..+++. +.+...+|++ +.+|.||.|.|.....
T Consensus 206 --d~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~~~~---~~v~~~~g~~--i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 206 --DDDMRALLARNMEGR-GIRIHPQTSLTSITKTDDG---LKVTLSHGEE--IVADVVLFATGRSPNT 265 (446)
T ss_pred --CHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe---EEEEEcCCcE--eecCEEEEeeCCCcCC
Confidence 012344555666666 89999887 8888765553 3344456654 5699999999986543
No 279
>PRK10262 thioredoxin reductase; Provisional
Probab=97.72 E-value=0.00049 Score=68.61 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||+|..|+-+|..|++.|.+|+++++.+... .
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------~------------------------------- 183 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------A------------------------------- 183 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------C-------------------------------
Confidence 3589999999999999999999999999999874210 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeC--CCcEEEEecCEEEEecCCCch
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTK--DGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~--~G~~~~v~ad~vI~ADG~~S~ 200 (502)
...+.+.+.+.+++. +++++.++ ++++..+++++.+|++.+. +++..++.+|.||.|-|....
T Consensus 184 ---~~~~~~~~~~~l~~~-gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 184 ---EKILIKRLMDKVENG-NIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred ---CHHHHHHHHhhccCC-CeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 001344556666665 89999987 8888766555666776543 234456789999999996543
No 280
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00058 Score=64.78 Aligned_cols=119 Identities=17% Similarity=0.141 Sum_probs=64.6
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEeceEEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhhcCCCCCCc
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSLCKPKVDVP 213 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l~~~~~~~~ 213 (502)
...-..+.+.|.+++.+. |+++...+|+++.+-.. -.+|+||.|.|..|. +..|.+. -
T Consensus 147 ~sE~~~ylpyl~k~l~e~-Gvef~~r~v~~l~E~~~----------------~~~DVivNCtGL~a~--~L~gDd~---~ 204 (342)
T KOG3923|consen 147 LSEGPKYLPYLKKRLTEN-GVEFVQRRVESLEEVAR----------------PEYDVIVNCTGLGAG--KLAGDDD---L 204 (342)
T ss_pred eccchhhhHHHHHHHHhc-CcEEEEeeeccHHHhcc----------------CCCcEEEECCccccc--cccCCcc---e
Confidence 445567899999999998 78888777777754211 128999999999874 2223222 2
Q ss_pred cceeEEEEeecCCCCCCceEEEEcCCCcEEEEecCCCeEEEEEEeC-CCCCCCCCchHHHHHHHHH
Q 010765 214 SCFVGLVLENCQLPFANHGHVILADPSPILFYPISSTEVRCLVDVP-GQKVPSISNGEMANYLKAM 278 (502)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 278 (502)
....|.+.. .+. +...++++.+....+++|..+. ..+.-... ++-.....+++..+.++..
T Consensus 205 yPiRGqVl~-V~A--pWvkhf~~~D~~~ty~iP~~~~-V~lGg~~Q~g~w~~ei~~~D~~dIl~rc 266 (342)
T KOG3923|consen 205 YPIRGQVLK-VDA--PWVKHFIYRDFSRTYIIPGTES-VTLGGTKQEGNWNLEITDEDRRDILERC 266 (342)
T ss_pred eeccceEEE-eeC--CceeEEEEecCCccEEecCCce-EEEccccccCcccCcCChhhHHHHHHHH
Confidence 234444443 222 3344555554433355554443 11111122 2222344555656655554
No 281
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=0.00036 Score=73.28 Aligned_cols=101 Identities=23% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+ ..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------~~--------------------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-------LE--------------------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------ch---------------------------------
Confidence 35799999999999999999999999999998743110 00
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
-..+...+.+.+++. ++++.++ +.++..+++ ..+++...+|+..++.+|.||.|.|.....
T Consensus 209 ---d~~~~~~~~~~l~~~--I~i~~~~~v~~i~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 209 ---DPEVSKQAQKILSKE--FKIKLGAKVTSVEKSGD--EKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred ---hHHHHHHHHHHHhhc--cEEEcCCEEEEEEEcCC--ceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 012344555555554 8888887 888876544 134443445555567899999999986554
No 282
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.70 E-value=0.00055 Score=67.21 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
..+|+|||+|++|+-+|..|++.|.+|+++++.+...
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------------------------------------------- 177 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------------------------------------------- 177 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------------------------------------------
Confidence 3589999999999999999999999999999863200
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCc
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S 199 (502)
....+.+.+++..+++++.++ +.++..++ ++..+++.+ .+|+..++.+|.+|.|.|...
T Consensus 178 ------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 178 ------AEKILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred ------cCHHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 001223344444489999887 88887644 555566544 356666788999999999654
No 283
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.70 E-value=0.00021 Score=72.98 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=63.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCCC-cccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPD-RIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~~-r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
.+|+|||||+||+++|..|.+. ..+|+|+++++..+- +.. +.. .+. +.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~--l~~----------~~~-~~---------------- 53 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD--LSH----------VFS-QG---------------- 53 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCc--CcH----------HHh-CC----------------
Confidence 4899999999999999999885 468999998754211 100 000 000 00
Q ss_pred ceeecchHHHH-HHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 132 GRSFHNGRFIQ-RMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 132 g~~i~r~~l~~-~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.....+.. ...+.+++. +++++.++ |+++..++.. |. . +|. ++.+|+||.|.|....
T Consensus 54 ---~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~~~---v~--~-~~~--~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 54 ---QRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAEAQV---VK--S-QGN--QWQYDKLVLATGASAF 112 (377)
T ss_pred ---CCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECCCCE---EE--E-CCe--EEeCCEEEECCCCCCC
Confidence 00011111 122233444 89998875 8888765442 22 2 344 3569999999998653
No 284
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.70 E-value=4.5e-05 Score=85.59 Aligned_cols=36 Identities=33% Similarity=0.508 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+||||||||+++|+.|++.|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999999854
No 285
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.68 E-value=0.00031 Score=70.90 Aligned_cols=43 Identities=33% Similarity=0.464 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCC-CeEEEEecCCCCCCccc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDRIV 94 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G-~~v~lvEr~~~~~~r~~ 94 (502)
..+..|+|||||+|||++|..|-+.| .+|+|+|-....++|+-
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 34458999999999999999999766 59999999877766653
No 286
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=6.5e-05 Score=71.87 Aligned_cols=38 Identities=34% Similarity=0.529 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD 91 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~ 91 (502)
.+|.+|||||.+|+.+|..|+++|.+|+||||++..++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 37999999999999999999999999999999976543
No 287
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.65 E-value=6.4e-05 Score=67.49 Aligned_cols=105 Identities=28% Similarity=0.365 Sum_probs=63.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhC--CCeEEEEecCCCCCCccc---chhhhccccccceEEEEECCceeeeeccCcCCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKD--GRRVHVIERDVTEPDRIV---DCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHA 128 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~~~~r~~---~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 128 (502)
+.||+|||||-+||++|+..+++ ..+|.|+|..-.+.+..+ .++..+....- ..++. +...++|. +.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKP--AhLFL--~EigvpYe--de-- 147 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKP--AHLFL--QEIGVPYE--DE-- 147 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcCh--HHHHH--HHhCCCcc--cC--
Confidence 56999999999999999999865 689999999877665443 22222111000 00000 00011111 11
Q ss_pred CCcceee-cchHHHHHHHHHHHcCCCeEEEece-EEEEEee
Q 010765 129 DVSGRSF-HNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE 167 (502)
Q Consensus 129 ~~~g~~i-~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~ 167 (502)
.. ...+ |-.-|......+...+||+++...+ +++++..
T Consensus 148 gd-YVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk 187 (328)
T KOG2960|consen 148 GD-YVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVK 187 (328)
T ss_pred CC-EEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcc
Confidence 01 1223 3345677777888888999999888 8877654
No 288
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.64 E-value=8.3e-05 Score=77.70 Aligned_cols=39 Identities=46% Similarity=0.552 Sum_probs=34.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhh--CCCeEEEEecCCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGK--DGRRVHVIERDVTEP 90 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~--~G~~v~lvEr~~~~~ 90 (502)
....+|+||||||||+.+|..|++ .|++|+|+||.+.+.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 345689999999999999999987 799999999997653
No 289
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.63 E-value=5.2e-05 Score=79.72 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=33.4
Q ss_pred cEEEECCCHHHHHHHHHHhhC------CCeEEEEecCCCCCCcc
Q 010765 56 DVIIVGAGVAGAALAHTLGKD------GRRVHVIERDVTEPDRI 93 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~------G~~v~lvEr~~~~~~r~ 93 (502)
+|+|||||++||++|+.|++. |.+|+|+|+++..++++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 699999999999999999986 48999999998776553
No 290
>PRK12831 putative oxidoreductase; Provisional
Probab=97.62 E-value=8.8e-05 Score=77.74 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
....||+||||||+||++|..|+++|++|+|+|+...
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4567999999999999999999999999999998753
No 291
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.60 E-value=0.00056 Score=76.38 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=70.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+....+ .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~------~l---------------------------------- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK------QL---------------------------------- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh------hc----------------------------------
Confidence 47999999999999999999999999999987431100 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.......+.+.+++. |++++.++ ++++..++ .+.+| ..++|++ +.+|+||.|.|...+.
T Consensus 181 --d~~~~~~l~~~l~~~-GV~v~~~~~v~~i~~~~-~~~~v--~~~dG~~--i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 181 --DQTAGRLLQRELEQK-GLTFLLEKDTVEIVGAT-KADRI--RFKDGSS--LEADLIVMAAGIRPND 240 (785)
T ss_pred --CHHHHHHHHHHHHHc-CCEEEeCCceEEEEcCC-ceEEE--EECCCCE--EEcCEEEECCCCCcCc
Confidence 011334555566666 89999998 88876543 33334 4567775 5599999999987543
No 292
>PRK14694 putative mercuric reductase; Provisional
Probab=97.60 E-value=0.00062 Score=71.67 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=68.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||+|+.|+-+|..|++.|.+|+|+++... +...
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~--------l~~~---------------------------------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV--------LSQE---------------------------------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC--------CCCC----------------------------------
Confidence 5799999999999999999999999999986411 0000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ +.++..+++. +.+...++ + +.+|.||.|.|.....
T Consensus 217 --~~~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~~~~---~~v~~~~~-~--i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 217 --DPAVGEAIEAAFRRE-GIEVLKQTQASEVDYNGRE---FILETNAG-T--LRAEQLLVATGRTPNT 275 (468)
T ss_pred --CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEECCC-E--EEeCEEEEccCCCCCc
Confidence 012344566666666 89999986 8888765543 33434433 3 6699999999988765
No 293
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.59 E-value=0.00062 Score=72.15 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=70.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+++... +..++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~--------l~~~d--------------------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP--------LRGFD--------------------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc--------cccCC---------------------------------
Confidence 3799999999999999999999999999986411 00000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
..+.+.+.+.+++. |++++.++ +.++...++. +.+...+|++ +.+|.||.|-|......
T Consensus 222 ---~~~~~~l~~~l~~~-GV~i~~~~~v~~v~~~~~~---~~v~~~~g~~--i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 222 ---RQCSEKVVEYMKEQ-GTLFLEGVVPINIEKMDDK---IKVLFSDGTT--ELFDTVLYATGRKPDIK 281 (499)
T ss_pred ---HHHHHHHHHHHHHc-CCEEEcCCeEEEEEEcCCe---EEEEECCCCE--EEcCEEEEeeCCCCCcc
Confidence 11345566666666 89999987 7777765443 2344456764 45999999999887653
No 294
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.59 E-value=0.00062 Score=71.82 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=68.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+++. .. +..++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~-------l~~~d--------------------------------- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-IL-------LRGFD--------------------------------- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cc-------ccccC---------------------------------
Confidence 47999999999999999999999999999874 10 00000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCc-EEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQ-ELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~-~~~v~ad~vI~ADG~~S~v 201 (502)
..+...+.+.+++. |++++.++ +.++...++.+ .+++ .+|+ ..++.+|.||.|-|.....
T Consensus 220 ---~~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~~~~~-~v~~--~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 220 ---QDCANKVGEHMEEH-GVKFKRQFVPIKVEQIEAKV-KVTF--TDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred ---HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeE-EEEE--ecCCcceEEEeCEEEEEecCCcCC
Confidence 12344556666666 89999987 77887655532 2333 3332 2346799999999976554
No 295
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.58 E-value=0.00092 Score=69.80 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=70.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+...+ ..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------~~---------------------------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-------RE---------------------------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-------Cc----------------------------------
Confidence 4799999999999999999999999999998642110 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ +.++..+++. +.+..++++ +.+|.||.|.|.....
T Consensus 198 --~~~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~~~~---v~v~~~~g~---i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 198 --DRDIADNIATILRDQ-GVDIILNAHVERISHHENQ---VQVHSEHAQ---LAVDALLIASGRQPAT 256 (441)
T ss_pred --CHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCE---EEEEEcCCe---EEeCEEEEeecCCcCC
Confidence 012344566666666 89999887 8888776553 334444443 4599999999988764
No 296
>PLN02676 polyamine oxidase
Probab=97.58 E-value=8.9e-05 Score=78.15 Aligned_cols=40 Identities=35% Similarity=0.521 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCCCCCc
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDR 92 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~~~~r 92 (502)
..+||+|||||++||++|..|+++|. +|+|+|++....++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGR 65 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCc
Confidence 35799999999999999999999998 69999998765543
No 297
>PRK14727 putative mercuric reductase; Provisional
Probab=97.56 E-value=0.00071 Score=71.38 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=70.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+++... +...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~--------l~~~---------------------------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL--------LFRE---------------------------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC--------CCcc----------------------------------
Confidence 4799999999999999999999999999987411 0000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
...+...+.+.+++. |++++.++ ++++..+++. +.+...+++ +.+|.||.|.|...+..
T Consensus 227 --d~~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~~~~---~~v~~~~g~---i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 227 --DPLLGETLTACFEKE-GIEVLNNTQASLVEHDDNG---FVLTTGHGE---LRAEKLLISTGRHANTH 286 (479)
T ss_pred --hHHHHHHHHHHHHhC-CCEEEcCcEEEEEEEeCCE---EEEEEcCCe---EEeCEEEEccCCCCCcc
Confidence 012344566666666 89999987 8888765553 334444443 56999999999987653
No 298
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.56 E-value=0.0044 Score=61.89 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=49.9
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
..++-..+...|.+.+.+. |++++.++ |+++..+++.+.+|. +.+| +++||.||.|.|.+|.
T Consensus 132 g~v~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~~~~~~~v~--~~~g---~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKL-GVEIIEHTEVQHIEIRGEKVTAIV--TPSG---DVQADQVVLAAGAWAG 194 (337)
T ss_pred ceEChHHHHHHHHHHHHHc-CCEEEccceEEEEEeeCCEEEEEE--cCCC---EEECCEEEEcCChhhh
Confidence 4567788999999999998 89999987 999988777665553 4445 3569999999999985
No 299
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.55 E-value=0.00076 Score=71.06 Aligned_cols=101 Identities=13% Similarity=0.210 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhh---CCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGK---DGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADV 130 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~---~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 130 (502)
.-+|+|||||+.|+-+|..++. .|.+|+|+|+.+...+ .+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-------~~------------------------------ 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-------GF------------------------------ 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-------cc------------------------------
Confidence 3579999999999999976654 4999999998743110 00
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 131 SGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 131 ~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
...+.+.+.+.+++. |++++.++ ++++..+++....+ ...+|++ +.+|.||.|.|...+..
T Consensus 230 ------d~~~~~~l~~~L~~~-GI~i~~~~~v~~i~~~~~~~~~v--~~~~g~~--i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 230 ------DSTLRKELTKQLRAN-GINIMTNENPAKVTLNADGSKHV--TFESGKT--LDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred ------CHHHHHHHHHHHHHc-CCEEEcCCEEEEEEEcCCceEEE--EEcCCCE--EEcCEEEEeeCCCcCcc
Confidence 012455666666666 89999998 88887654432223 3345654 56999999999876653
No 300
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.55 E-value=0.00064 Score=76.16 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-.++|||||+.|+-+|..|++.|.+|+|+|+.+....+ .++
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~------~ld--------------------------------- 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE------QLD--------------------------------- 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh------hcC---------------------------------
Confidence 46999999999999999999999999999987421000 000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
......|.+.+++. |++++.++ ++++..++ +.+ ..+..++|++ +.+|+||.|.|...+.
T Consensus 187 ---~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~--~~v~~~dG~~--i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 187 ---QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEAR--KTMRFADGSE--LEVDFIVFSTGIRPQD 247 (847)
T ss_pred ---HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCce--EEEEECCCCE--EEcCEEEECCCcccCc
Confidence 11344566666666 89999998 88886543 222 2344567875 5599999999988654
No 301
>PTZ00058 glutathione reductase; Provisional
Probab=97.54 E-value=0.00081 Score=71.90 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+... ..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------~~~--------------------------------- 276 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------RKF--------------------------------- 276 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------ccC---------------------------------
Confidence 4579999999999999999999999999999874210 000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+ ..+.+.+.+.+++. |++++.+. +.++..+++. ++.+...++. .++.+|.||.|.|....+
T Consensus 277 --d-~~i~~~l~~~L~~~-GV~i~~~~~V~~I~~~~~~--~v~v~~~~~~-~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 277 --D-ETIINELENDMKKN-NINIITHANVEEIEKVKEK--NLTIYLSDGR-KYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred --C-HHHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCC--cEEEEECCCC-EEEECCEEEECcCCCCCc
Confidence 0 12344555666666 89999987 8888765432 2233333333 246799999999976553
No 302
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.54 E-value=0.00035 Score=78.02 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=63.0
Q ss_pred EEEECCCHHHHHHHHHHhhC---CCeEEEEecCCCCC-CcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 57 VIIVGAGVAGAALAHTLGKD---GRRVHVIERDVTEP-DRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 57 VvIVGaG~aGl~~A~~La~~---G~~v~lvEr~~~~~-~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
|||||||++|+.+|..|.+. +++|+|+|+.+..+ .+.. +.. +..|..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~--L~~-----------~l~g~~---------------- 51 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRIL--LSS-----------VLQGEA---------------- 51 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccccc--ccH-----------HHCCCC----------------
Confidence 68999999999999988764 57999999986532 1110 000 000000
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
....+.....+.+++. +++++.++ |+.+..+... | ...+|++ +.+|.||.|+|....
T Consensus 52 ---~~~~l~~~~~~~~~~~-gv~~~~g~~V~~Id~~~k~---V--~~~~g~~--~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 52 ---DLDDITLNSKDWYEKH-GITLYTGETVIQIDTDQKQ---V--ITDAGRT--LSYDKLILATGSYPF 109 (785)
T ss_pred ---CHHHccCCCHHHHHHC-CCEEEcCCeEEEEECCCCE---E--EECCCcE--eeCCEEEECCCCCcC
Confidence 0000111112223344 89999986 8888765442 2 3456664 459999999998643
No 303
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.53 E-value=0.00095 Score=69.86 Aligned_cols=98 Identities=27% Similarity=0.414 Sum_probs=67.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... ..++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll-------~~~d-------------------------------- 209 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL-------RHLD-------------------------------- 209 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc-------cccC--------------------------------
Confidence 3589999999999999999999999999999864210 0000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
..+...+.+.. +. +++++.++ ++++..+++. +.+...+|++ +.+|.||.|.|.....
T Consensus 210 ----~~~~~~l~~~~-~~-gI~i~~~~~V~~i~~~~~~---v~v~~~~g~~--i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 210 ----EDISDRFTEIA-KK-KWDIRLGRNVTAVEQDGDG---VTLTLDDGST--VTADVLLVATGRVPNG 267 (452)
T ss_pred ----HHHHHHHHHHH-hc-CCEEEeCCEEEEEEEcCCe---EEEEEcCCCE--EEcCEEEEeeccCcCC
Confidence 01222333322 33 68999887 8888766554 3344556654 5699999999976543
No 304
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.52 E-value=0.00097 Score=69.32 Aligned_cols=97 Identities=24% Similarity=0.351 Sum_probs=68.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||++|+-+|..|++.|.+|+++++.+.... ..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------~~----------------------------------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------KL----------------------------------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------cc-----------------------------------
Confidence 4799999999999999999999999999998743100 00
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
+ ...+...+.+.+++. |++++.++ +.++..++ .+ + ...+|++ +.+|.+|.|.|.....
T Consensus 177 ~-~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~-~~--v--~~~~g~~--i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 177 F-DEEMNQIVEEELKKH-EINLRLNEEVDSIEGEE-RV--K--VFTSGGV--YQADMVILATGIKPNS 235 (427)
T ss_pred c-CHHHHHHHHHHHHHc-CCEEEeCCEEEEEecCC-CE--E--EEcCCCE--EEeCEEEECCCccCCH
Confidence 0 012345566666666 89999887 88886543 22 2 2345664 5699999999987543
No 305
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.52 E-value=0.00093 Score=69.93 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|||+|||+||+|..+|.. +.|.+|.|+||+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 5899999999999998654 4799999999864
No 306
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.51 E-value=9.7e-05 Score=75.73 Aligned_cols=35 Identities=34% Similarity=0.499 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVTEP 90 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~~~ 90 (502)
.|+|||||++||++|+.|+++| +.++|+|+++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 5899999999999999999999 9999999986654
No 307
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.51 E-value=0.00013 Score=80.20 Aligned_cols=41 Identities=37% Similarity=0.511 Sum_probs=36.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDR 92 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r 92 (502)
....+|+|||||++||++|+.|++.|++|+|+|++...++|
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 34679999999999999999999999999999998766544
No 308
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.51 E-value=0.00054 Score=76.72 Aligned_cols=105 Identities=11% Similarity=0.177 Sum_probs=64.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhC----CCeEEEEecCCCCC-CcccchhhhccccccceEEEEECCceeeeeccCcCCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVTEP-DRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHAD 129 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~----G~~v~lvEr~~~~~-~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 129 (502)
.+|||||+|++|+.+|..|.+. +++|+||++.+..+ .|.. +... ..+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~-L~~~------------~~~~~------------- 57 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVH-LSSY------------FSHHT------------- 57 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCc-chHh------------HcCCC-------------
Confidence 4899999999999999999764 58999999986532 1110 0000 00000
Q ss_pred CcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 130 VSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 130 ~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
-..+.....+..++. +++++.++ |+++..+... +.+.+|+. +.+|.||.|+|....
T Consensus 58 -------~~~l~~~~~~~~~~~-gI~~~~g~~V~~Id~~~~~-----V~~~~G~~--i~yD~LVIATGs~p~ 114 (847)
T PRK14989 58 -------AEELSLVREGFYEKH-GIKVLVGERAITINRQEKV-----IHSSAGRT--VFYDKLIMATGSYPW 114 (847)
T ss_pred -------HHHccCCCHHHHHhC-CCEEEcCCEEEEEeCCCcE-----EEECCCcE--EECCEEEECCCCCcC
Confidence 000111111222333 89999987 8888665432 23456764 559999999998654
No 309
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.49 E-value=0.00014 Score=75.90 Aligned_cols=37 Identities=38% Similarity=0.486 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
....+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4567999999999999999999999999999999753
No 310
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.48 E-value=0.00085 Score=69.96 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=67.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... ..+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-------~~~---------------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN-------KLM---------------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc-------hhc----------------------------------
Confidence 479999999999999999999999999999874210 000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ +.++.. . .++ .++|+. +.+|.||.|.|.....
T Consensus 188 --d~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~--~---~v~--~~~g~~--~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 188 --DADMNQPILDELDKR-EIPYRLNEEIDAING--N---EVT--FKSGKV--EHYDMIIEGVGTHPNS 243 (438)
T ss_pred --CHHHHHHHHHHHHhc-CCEEEECCeEEEEeC--C---EEE--ECCCCE--EEeCEEEECcCCCcCh
Confidence 012344556666666 89999887 888753 2 233 345664 4599999999987653
No 311
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.48 E-value=0.0072 Score=61.78 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=47.5
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
..++...+...|.+.+++ |+++++++ |+++..+++. +.+.+.+|.. +.||.||.|.|.+|.
T Consensus 130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~~~~---~~v~t~~g~~--~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERDGEG---WQLLDANGEV--IAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEcCCe---EEEEeCCCCE--EEcCEEEEcCCcccc
Confidence 356778889999988877 79999887 9998876664 4455667764 459999999999984
No 312
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.46 E-value=0.00013 Score=80.84 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
...+|+||||||||+++|+.|++.|++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45689999999999999999999999999999864
No 313
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.46 E-value=0.001 Score=68.37 Aligned_cols=102 Identities=28% Similarity=0.370 Sum_probs=74.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
..+|+|||+|+.|+.+|..|+++|++|+++|+.+....+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~--------------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL--------------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh---------------------------------------
Confidence 36999999999999999999999999999999864322110
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
. ..+-..+.+.+++. +++++.++ +.+++...+......+...++.. +.+|+++.+.|..-+
T Consensus 177 --~-~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~g~~p~ 238 (415)
T COG0446 177 --D-PEVAEELAELLEKY-GVELLLGTKVVGVEGKGNTLVVERVVGIDGEE--IKADLVIIGPGERPN 238 (415)
T ss_pred --h-HHHHHHHHHHHHHC-CcEEEeCCceEEEEcccCcceeeEEEEeCCcE--EEeeEEEEeeccccc
Confidence 0 23566677777777 69998887 88888766543221133445554 559999999997654
No 314
>PLN02529 lysine-specific histone demethylase 1
Probab=97.46 E-value=0.00016 Score=78.99 Aligned_cols=38 Identities=42% Similarity=0.451 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
...+|+|||||++||++|..|+++|++|+|+|++....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCc
Confidence 45799999999999999999999999999999986543
No 315
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.45 E-value=0.00015 Score=79.43 Aligned_cols=36 Identities=42% Similarity=0.569 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999999999999754
No 316
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.45 E-value=0.0015 Score=68.30 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=68.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||++|+-+|..|++.|.+|+++++.+..... .
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------------------------~------------- 188 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD---------------------------S------------- 188 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch---------------------------h-------------
Confidence 357999999999999999999999999999986421000 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
+ ...+.+.+.+.+++. |++++.++ ++++.. ++.+..+ ..+ +.+ +.+|++|.|.|....
T Consensus 189 -~-~~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~-~~~~~~v--~~~-~~~--i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 189 -F-DKEITDVMEEELREN-GVELHLNEFVKSLIG-EDKVEGV--VTD-KGE--YEADVVIVATGVKPN 247 (444)
T ss_pred -c-CHHHHHHHHHHHHHC-CCEEEcCCEEEEEec-CCcEEEE--EeC-CCE--EEcCEEEECcCCCcC
Confidence 0 012455666677776 79999887 888854 3433323 233 333 569999999998654
No 317
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.43 E-value=0.00073 Score=65.46 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
...+|.|||+|++||++|+.|+++ ++|+|+|.+....
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlG 43 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLG 43 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecccccc
Confidence 456899999999999999999976 8999999986544
No 318
>PLN02546 glutathione reductase
Probab=97.43 E-value=0.0013 Score=70.38 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+... ..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-------~~~--------------------------------- 291 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-------RGF--------------------------------- 291 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-------ccc---------------------------------
Confidence 3589999999999999999999999999999874210 000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLR 202 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR 202 (502)
...+...+.+.+++. |++++.++ +.++..+++.. +.+...+++ ...+|.||.|.|......
T Consensus 292 ---d~~~~~~l~~~L~~~-GV~i~~~~~v~~i~~~~~g~--v~v~~~~g~--~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 292 ---DEEVRDFVAEQMSLR-GIEFHTEESPQAIIKSADGS--LSLKTNKGT--VEGFSHVMFATGRKPNTK 353 (558)
T ss_pred ---CHHHHHHHHHHHHHC-CcEEEeCCEEEEEEEcCCCE--EEEEECCeE--EEecCEEEEeeccccCCC
Confidence 012344555666666 89999987 88887644432 234444443 234899999999887653
No 319
>PRK13748 putative mercuric reductase; Provisional
Probab=97.42 E-value=0.0012 Score=71.08 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=68.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||+.|+-+|..|++.|.+|+|+++... +...
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~--------l~~~---------------------------------- 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL--------FFRE---------------------------------- 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc--------cccc----------------------------------
Confidence 4799999999999999999999999999997521 0000
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+.+.+++. |++++.++ +.++..+++. +.+...++ ++.+|.||.|.|...+.
T Consensus 309 --d~~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~---~~v~~~~~---~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 --DPAIGEAVTAAFRAE-GIEVLEHTQASQVAHVDGE---FVLTTGHG---ELRADKLLVATGRAPNT 367 (561)
T ss_pred --CHHHHHHHHHHHHHC-CCEEEcCCEEEEEEecCCE---EEEEecCC---eEEeCEEEEccCCCcCC
Confidence 011334555566665 89999887 8888765553 33444444 25699999999987655
No 320
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.39 E-value=0.00023 Score=73.50 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHH-hhCCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTL-GKDGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~L-a~~G~~v~lvEr~~~~~ 90 (502)
....|+||||||+|+.+|..| ++.|++|+|+||.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 346899999999999999965 57899999999997643
No 321
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.39 E-value=0.00019 Score=81.86 Aligned_cols=37 Identities=38% Similarity=0.301 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
...+|+||||||+||++|..|++.|++|+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998544
No 322
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.38 E-value=0.0023 Score=66.90 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=67.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||..|+-+|..|.+.|.+|+|++++.... + + .
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~---------~---------------------~-----~------ 311 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED---------M---------------------T-----A------ 311 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc---------C---------------------C-----C------
Confidence 589999999999999999999999999999874200 0 0 0
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-------CC---------CcEEEEecCEEEEecC
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-------KD---------GQELRAYAPLTIVCDG 196 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-------~~---------G~~~~v~ad~vI~ADG 196 (502)
.....+.+++. |+++++++ ++++..+ ++++.+|++.. .+ |+..++.+|.||.|-|
T Consensus 312 ------~~~~~~~l~~~-GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG 384 (449)
T TIGR01316 312 ------RVEEIAHAEEE-GVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG 384 (449)
T ss_pred ------CHHHHHHHHhC-CCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC
Confidence 01112334454 89999887 8888754 45666666541 12 3344678999999998
Q ss_pred CC
Q 010765 197 CF 198 (502)
Q Consensus 197 ~~ 198 (502)
..
T Consensus 385 ~~ 386 (449)
T TIGR01316 385 NG 386 (449)
T ss_pred CC
Confidence 64
No 323
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.37 E-value=0.00023 Score=79.26 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
....+|+|||||||||++|..|++.|++|+|+|+.+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3467999999999999999999999999999998643
No 324
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.36 E-value=0.00068 Score=67.81 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchhhhhh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~vR~~l 205 (502)
.+-..+.+.++++ |.+|.... |.++.-+++.+.||.+ +||++ ++++.||-=.+.+-+.-+.+
T Consensus 265 avs~aia~~~~~~-GaeI~tka~Vq~Illd~gka~GV~L--~dG~e--v~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 265 AVSFAIAEGAKRA-GAEIFTKATVQSILLDSGKAVGVRL--ADGTE--VRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHHHHHhc-cceeeehhhhhheeccCCeEEEEEe--cCCcE--EEeeeeecCCchHHHHHHhC
Confidence 5677788888888 67776665 9999988888878765 67876 45888887666665554444
No 325
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.30 E-value=0.0022 Score=64.88 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=64.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCe-EEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~-v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
-.|+|||+|+.|+-+|..|.+.|.+ |+|++++.... . + .
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~-----------~-------------------~--------~-- 212 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE-----------A-------------------P--------A-- 212 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh-----------C-------------------C--------C--
Confidence 4799999999999999999999997 99999863100 0 0 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe----------------CCCcEEEEecCEEEEecC
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT----------------KDGQELRAYAPLTIVCDG 196 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~----------------~~G~~~~v~ad~vI~ADG 196 (502)
...+.+.++++ ++++++++ ++++..+ +++..|++.. .+|+..++.+|.||.|-|
T Consensus 213 -------~~~~~~~l~~~-gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G 283 (352)
T PRK12770 213 -------GKYEIERLIAR-GVEFLELVTPVRIIGE-GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG 283 (352)
T ss_pred -------CHHHHHHHHHc-CCEEeeccCceeeecC-CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc
Confidence 00112234455 79999887 7787644 4444454421 134555688999999999
Q ss_pred CCc
Q 010765 197 CFS 199 (502)
Q Consensus 197 ~~S 199 (502)
...
T Consensus 284 ~~p 286 (352)
T PRK12770 284 EIP 286 (352)
T ss_pred cCC
Confidence 754
No 326
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0028 Score=61.16 Aligned_cols=141 Identities=19% Similarity=0.275 Sum_probs=76.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC-CCCCccc---------chhh-hcccc-ccceEEEEECCceeee
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV-TEPDRIV---------DCVE-EIDAQ-QVLGYALFKDGKSTRL 119 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~-~~~~r~~---------~~l~-~l~~~-~~~g~~~~~~g~~~~~ 119 (502)
..+||.+|||||-+||+||-..+..|.+|.++|--. .|.+..+ +|+. .+-.+ ...|-.+....+ .
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~k---y 93 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARK---Y 93 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHh---h
Confidence 568999999999999999999999999999999763 3332222 2221 11000 000000000000 0
Q ss_pred eccCcCCCCCCcceeecchHHHHHHHHHHHcCC---CeEEEeceEEEEEeeCCeE--EEEEEEeCCCcEEEEecCEEEEe
Q 010765 120 SYPLEKFHADVSGRSFHNGRFIQRMREKAASLP---NVRLEQGTVTSLLEENGTI--KGVQYKTKDGQELRAYAPLTIVC 194 (502)
Q Consensus 120 ~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~---~v~i~~~~v~~~~~~~~~v--~~v~~~~~~G~~~~v~ad~vI~A 194 (502)
.+...+. ..--+-..|.+...++..+.. .+++++.+|+-+..-..-+ ..+......|++..+.|+.+|.|
T Consensus 94 GW~~~e~-----~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIa 168 (503)
T KOG4716|consen 94 GWNVDEQ-----KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIA 168 (503)
T ss_pred CCCCccc-----cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEE
Confidence 0000000 000112356777777777652 1445555544433211100 13455667777667889999999
Q ss_pred cCCCch
Q 010765 195 DGCFSN 200 (502)
Q Consensus 195 DG~~S~ 200 (502)
.|.+-+
T Consensus 169 tG~RPr 174 (503)
T KOG4716|consen 169 TGLRPR 174 (503)
T ss_pred ecCCCC
Confidence 997643
No 327
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.28 E-value=0.0029 Score=68.15 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
..+...|.+.+.+. +++++.++ +++++.+ +++|.||.+.+ .+|+.+.+.|+-||.|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhcc-CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 35788888888876 89999998 9998874 67899998754 68888889999999999999864
No 328
>PRK12831 putative oxidoreductase; Provisional
Probab=97.24 E-value=0.0033 Score=65.96 Aligned_cols=98 Identities=26% Similarity=0.320 Sum_probs=66.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||.+|+-+|..|.+.|.+|+|++|+... .+..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~---------~m~a------------------------------- 320 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE---------ELPA------------------------------- 320 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc---------cCCC-------------------------------
Confidence 458999999999999999999999999999986320 0000
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-------C---------CCcEEEEecCEEEEec
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-------K---------DGQELRAYAPLTIVCD 195 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-------~---------~G~~~~v~ad~vI~AD 195 (502)
. .. .+ +.+.+. |+++++++ ++++..+ ++.+.+|++.. + +|++.++.+|.||.|-
T Consensus 321 --~---~~-e~-~~a~~e-GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~Ai 392 (464)
T PRK12831 321 --R---VE-EV-HHAKEE-GVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL 392 (464)
T ss_pred --C---HH-HH-HHHHHc-CCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECC
Confidence 0 01 11 223344 89999887 7777653 45666666531 1 3444567899999999
Q ss_pred CCCc
Q 010765 196 GCFS 199 (502)
Q Consensus 196 G~~S 199 (502)
|...
T Consensus 393 G~~p 396 (464)
T PRK12831 393 GTSP 396 (464)
T ss_pred CCCC
Confidence 8643
No 329
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.24 E-value=0.0023 Score=66.39 Aligned_cols=91 Identities=22% Similarity=0.317 Sum_probs=63.8
Q ss_pred cEEEECCCHHHHHHHHHHhh--------------CCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeec
Q 010765 56 DVIIVGAGVAGAALAHTLGK--------------DGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSY 121 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~--------------~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~ 121 (502)
.|+|||||++|+-+|..|+. .|.+|+|+|+.+... ..+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll-------~~~--------------------- 226 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL-------GSF--------------------- 226 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc-------ccC---------------------
Confidence 79999999999999999975 478999999864210 000
Q ss_pred cCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 122 PLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 122 ~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
...+.+.+.+.+++. ||+++.++ ++++.. +. |. .++|++ +.+|++|.|.|...
T Consensus 227 ---------------~~~~~~~~~~~L~~~-gV~v~~~~~v~~v~~--~~---v~--~~~g~~--i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 227 ---------------DQALRKYGQRRLRRL-GVDIRTKTAVKEVLD--KE---VV--LKDGEV--IPTGLVVWSTGVGP 280 (424)
T ss_pred ---------------CHHHHHHHHHHHHHC-CCEEEeCCeEEEEeC--CE---EE--ECCCCE--EEccEEEEccCCCC
Confidence 012445555666666 89999887 877753 22 33 456764 55999999999653
No 330
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.23 E-value=0.0004 Score=75.92 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 456999999999999999999999999999999854
No 331
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.22 E-value=0.00047 Score=72.42 Aligned_cols=36 Identities=36% Similarity=0.537 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 457999999999999999999999999999999854
No 332
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.15 E-value=0.002 Score=68.64 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=58.9
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCch-hhhhhcC
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSN-LRRSLCK 207 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~-vR~~l~~ 207 (502)
.++-.++...|.+.+.++ |+++..++ |+++..+++++.+|++.+ .+|+..+++|+.||.|.|.+|. +.+.++.
T Consensus 124 ~vdp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEH-GARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred EECHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 567788999999999888 89998887 999998888888888764 4566667889999999999985 4444444
No 333
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.12 E-value=0.00062 Score=74.38 Aligned_cols=36 Identities=33% Similarity=0.550 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 467899999999999999999999999999999864
No 334
>PLN03000 amine oxidase
Probab=97.12 E-value=0.00061 Score=75.12 Aligned_cols=41 Identities=39% Similarity=0.536 Sum_probs=36.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI 93 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~ 93 (502)
...+|+|||||++||++|..|++.|++|+|+|++....+|+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 35799999999999999999999999999999987765543
No 335
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.09 E-value=0.00045 Score=71.53 Aligned_cols=39 Identities=36% Similarity=0.532 Sum_probs=35.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRI 93 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~ 93 (502)
.+|.||||||+||++|..|++.|++|+++|+.+....+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll 162 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLL 162 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeE
Confidence 689999999999999999999999999999997765443
No 336
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.09 E-value=0.0052 Score=66.87 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=67.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
-+|+|||||..|+-+|..|++.|.+|+|+|+.+...+ .+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-------~~---------------------------------- 351 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-------LL---------------------------------- 351 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-------cC----------------------------------
Confidence 4799999999999999999999999999999743110 00
Q ss_pred ecchHHHHHHHHHH-HcCCCeEEEece-EEEEEeeCCe-EEEEEEEe-C----CC------cEEEEecCEEEEecCCCch
Q 010765 135 FHNGRFIQRMREKA-ASLPNVRLEQGT-VTSLLEENGT-IKGVQYKT-K----DG------QELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 135 i~r~~l~~~L~~~a-~~~~~v~i~~~~-v~~~~~~~~~-v~~v~~~~-~----~G------~~~~v~ad~vI~ADG~~S~ 200 (502)
...+...+.+.+ ++. |++++.++ |.++..+++. .+.+.... . ++ +..++.+|.||.|.|..-.
T Consensus 352 --d~eis~~l~~~ll~~~-GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 352 --DADVAKYFERVFLKSK-PVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred --CHHHHHHHHHHHhhcC-CcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 011233334433 344 89999997 8888765432 11222221 1 11 1135779999999998765
Q ss_pred h
Q 010765 201 L 201 (502)
Q Consensus 201 v 201 (502)
+
T Consensus 429 t 429 (659)
T PTZ00153 429 T 429 (659)
T ss_pred C
Confidence 4
No 337
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.06 E-value=0.00063 Score=72.59 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCC--cEEEEecCEEEEecCCCch
Q 010765 143 RMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDG--QELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 143 ~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G--~~~~v~ad~vI~ADG~~S~ 200 (502)
.+...+.+.+|.++..+. ++.++.+.++.++|++...++ .+..+.++.||.|-|+.-.
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 334446677899999988 999999999999999887654 3555678888888887643
No 338
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.0068 Score=61.85 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC---CeEEEEecCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDG---RRVHVIERDVTE 89 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G---~~v~lvEr~~~~ 89 (502)
++|+|||+|++|+.+|..|.+.- -.+.|+|+++..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 68999999999999999998851 239999998654
No 339
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.00 E-value=0.0077 Score=64.73 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=66.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||..|+-+|..|++.|.+|+++++.+... .
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-----------~------------------------------- 180 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-----------C------------------------------- 180 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-----------c-------------------------------
Confidence 3579999999999999999999999999999874200 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEE--ecCE----EEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRA--YAPL----TIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v--~ad~----vI~ADG~~S~v 201 (502)
...+.+.+.+..+++++.++ ++++..+ +.+..+.+.. .+|+..++ .+|. ||.|.|.....
T Consensus 181 -------~~~~~~~~~~~~gV~i~~~~~V~~i~~~-~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~ 248 (555)
T TIGR03143 181 -------AKLIAEKVKNHPKIEVKFNTELKEATGD-DGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSS 248 (555)
T ss_pred -------CHHHHHHHHhCCCcEEEeCCEEEEEEcC-CcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCCh
Confidence 00111222233489999987 8888643 4444444433 46765543 3776 99999987654
No 340
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.96 E-value=0.00095 Score=70.44 Aligned_cols=36 Identities=39% Similarity=0.585 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 346999999999999999999999999999999853
No 341
>PLN02976 amine oxidase
Probab=96.96 E-value=0.001 Score=76.05 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=35.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPD 91 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~ 91 (502)
....+|+|||||++|+++|+.|++.|++|+|+|++....+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 4458999999999999999999999999999999865543
No 342
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.93 E-value=0.0032 Score=63.81 Aligned_cols=99 Identities=27% Similarity=0.326 Sum_probs=66.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCC-------------CeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeee
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDG-------------RRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLS 120 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G-------------~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~ 120 (502)
..+|+|||||++|--+|..|+..- ++|+|+|+.+..- ..
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-------p~--------------------- 206 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-------PM--------------------- 206 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-------cC---------------------
Confidence 468999999999999999987642 3677777764310 00
Q ss_pred ccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC-
Q 010765 121 YPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF- 198 (502)
Q Consensus 121 ~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~- 198 (502)
.-.++.....+.++++ ||+++.++ |++++.+ +|++ ++|++ ++.++.+|=|.|.+
T Consensus 207 ---------------~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~-----~v~~--~~g~~-~I~~~tvvWaaGv~a 262 (405)
T COG1252 207 ---------------FPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD-----GVTL--KDGEE-EIPADTVVWAAGVRA 262 (405)
T ss_pred ---------------CCHHHHHHHHHHHHHC-CCEEEcCCceEEECCC-----cEEE--ccCCe-eEecCEEEEcCCCcC
Confidence 0112444555566666 89999999 8888754 2443 44554 57799999999987
Q ss_pred chhhhh
Q 010765 199 SNLRRS 204 (502)
Q Consensus 199 S~vR~~ 204 (502)
|++-+.
T Consensus 263 ~~~~~~ 268 (405)
T COG1252 263 SPLLKD 268 (405)
T ss_pred Chhhhh
Confidence 444444
No 343
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.90 E-value=0.0012 Score=65.89 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=32.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeE--EEEecCCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRV--HVIERDVTEP 90 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v--~lvEr~~~~~ 90 (502)
....+|+|||||++||++|+.|++.+-+| +|+|..+...
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 44679999999999999999999998765 5599986543
No 344
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.88 E-value=0.011 Score=67.91 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
.-+|+|||+|+.|+-+|..|++.|. .|+|+|+.+..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence 3589999999999999999999995 58899876310
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+.+.+++. +++++.++ ++.+.. ++.+.+|++...+|+..++.+|.|+.+-|.....
T Consensus 354 --------~~~l~~~L~~~-GV~i~~~~~v~~i~g-~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 354 --------SPEARAEAREL-GIEVLTGHVVAATEG-GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred --------hHHHHHHHHHc-CCEEEcCCeEEEEec-CCcEEEEEEEecCCceEEEECCEEEEcCCcCchh
Confidence 00133445555 89999998 777654 3455567776444555567899999999987654
No 345
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.84 E-value=0.0072 Score=66.68 Aligned_cols=38 Identities=39% Similarity=0.492 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
....|.|||.||+||++|-.|-+.|+.|+|+||.....
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC
Confidence 35689999999999999999999999999999987654
No 346
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.79 E-value=0.014 Score=65.14 Aligned_cols=98 Identities=23% Similarity=0.303 Sum_probs=66.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCe-EEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~-v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
.-+|+|||||.+|+-+|..|.+.|.+ |+|++++... .+ + .
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~---------~~---------------------~-----~---- 610 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE---------EM---------------------P-----A---- 610 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc---------cC---------------------C-----C----
Confidence 35899999999999999999999997 9999987320 00 0 0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-------C---------CCcEEEEecCEEEEe
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-------K---------DGQELRAYAPLTIVC 194 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-------~---------~G~~~~v~ad~vI~A 194 (502)
+ ... .+.+++. |+++++++ ++++..+ ++.+.++++.. + +|++.++.+|.||.|
T Consensus 611 ----~--~~e--~~~~~~~-GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A 681 (752)
T PRK12778 611 ----R--LEE--VKHAKEE-GIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVS 681 (752)
T ss_pred ----C--HHH--HHHHHHc-CCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEEC
Confidence 0 011 1234444 89998887 7777654 45666666531 1 234456789999999
Q ss_pred cCCCc
Q 010765 195 DGCFS 199 (502)
Q Consensus 195 DG~~S 199 (502)
-|...
T Consensus 682 ~G~~p 686 (752)
T PRK12778 682 VGVSP 686 (752)
T ss_pred cCCCC
Confidence 98643
No 347
>PRK13984 putative oxidoreductase; Provisional
Probab=96.79 E-value=0.0018 Score=70.47 Aligned_cols=37 Identities=35% Similarity=0.344 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
....+|+|||+|++|+++|..|++.|++|+|+|+.+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3456899999999999999999999999999999864
No 348
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.78 E-value=0.011 Score=62.39 Aligned_cols=39 Identities=33% Similarity=0.449 Sum_probs=34.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHhhC-CCeEEEEecCCCC
Q 010765 51 NGSPTDVIIVGAGVAGAALAHTLGKD-GRRVHVIERDVTE 89 (502)
Q Consensus 51 ~~~~~dVvIVGaG~aGl~~A~~La~~-G~~v~lvEr~~~~ 89 (502)
...+||.||||||-||+.+|..|++. .++|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 36689999999999999999999986 6899999998665
No 349
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.74 E-value=0.023 Score=58.48 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhC----CCeEEEEecCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKD----GRRVHVIERDVTE 89 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~----G~~v~lvEr~~~~ 89 (502)
.++=|||+|+|+|++|.+|-|. |-+|+|+|+...+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 4678999999999999999996 5799999998654
No 350
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.01 Score=57.68 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
..++|.+|||||-.|++.|...+.+|.+|.|+|-.-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 458999999999999999999999999999999763
No 351
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.67 E-value=0.017 Score=58.75 Aligned_cols=101 Identities=27% Similarity=0.292 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-.|++||+|..|+-+|..|...+.+|++|++.+.+-.+..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf--------------------------------------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLF--------------------------------------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhh---------------------------------------
Confidence 45699999999999999999999999999999864322100
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
-..+.+...+..++. +++++.++ +.++..+. +++. .+...+|.+ +.||+||.+-|+.+.+
T Consensus 254 ---~~~i~~~~~~y~e~k-gVk~~~~t~~s~l~~~~~Gev~--~V~l~dg~~--l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 254 ---GPSIGQFYEDYYENK-GVKFYLGTVVSSLEGNSDGEVS--EVKLKDGKT--LEADLVVVGIGIKPNT 315 (478)
T ss_pred ---hHHHHHHHHHHHHhc-CeEEEEecceeecccCCCCcEE--EEEeccCCE--eccCeEEEeecccccc
Confidence 011344444555554 89999999 78887665 4543 445677875 4599999999998654
No 352
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.56 E-value=0.021 Score=61.44 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchh
Q 010765 139 RFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 139 ~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
.+...|.+.+++. ++++..++ +++++.++++|.||...+ .+|+...++|+-||.|+|..+.+
T Consensus 120 ~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 120 AILHTLYQQNLKA-DTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred HHHHHHHHHHHhC-CCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 5788888888876 89999998 999998788999998754 57887788999999999999864
No 353
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.52 E-value=0.024 Score=56.54 Aligned_cols=147 Identities=18% Similarity=0.136 Sum_probs=83.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCC-CeEEEEecCCCCCCcccchhhhccccc--cceEE-EEECC-ceeeeeccCcC-
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVTEPDRIVDCVEEIDAQQ--VLGYA-LFKDG-KSTRLSYPLEK- 125 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G-~~v~lvEr~~~~~~r~~~~l~~l~~~~--~~g~~-~~~~g-~~~~~~~~~~~- 125 (502)
+..+|++.||-||.-|++|+.|..++ .+++.+||.+...-.-.-+++....+. +.... ..+.. ....++|-..+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 56789999999999999999999986 789999999775432222222211110 00000 00000 00000110000
Q ss_pred -C-C-CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 126 -F-H-ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 126 -~-~-~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
. . ....-..+.|.++.+.+.-.+...+ .+++|+ |+++...+ +.....-+.+.++..+ +|+-||...|..-.
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y--~ar~lVlg~G~~P~ 158 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISSLDGDAVVRLFVVTANGTVY--RARNLVLGVGTQPY 158 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccccCCcceeEEEEEcCCCcEE--EeeeEEEccCCCcC
Confidence 0 0 0111245778899999998888774 567887 88663322 2222222445556544 59999999997654
Q ss_pred hh
Q 010765 201 LR 202 (502)
Q Consensus 201 vR 202 (502)
+-
T Consensus 159 IP 160 (436)
T COG3486 159 IP 160 (436)
T ss_pred CC
Confidence 43
No 354
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.51 E-value=0.027 Score=61.88 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
..+|+|||||..|+-+|..+.+.|. +|++++++....- + .
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~------------------------------~-----~---- 508 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANM------------------------------P-----G---- 508 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCC------------------------------C-----C----
Confidence 3579999999999999999999997 6999988732100 0 0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEe-------C---------CCcEEEEecCEEEEe
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLE-ENGTIKGVQYKT-------K---------DGQELRAYAPLTIVC 194 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~-~~~~v~~v~~~~-------~---------~G~~~~v~ad~vI~A 194 (502)
. . ...+.+.+. |+++++++ ++++.. +++++.+|++.. + .|++.++.+|.||.|
T Consensus 509 ---~----~-~e~~~~~~~-Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A 579 (654)
T PRK12769 509 ---S----K-KEVKNAREE-GANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMA 579 (654)
T ss_pred ---C----H-HHHHHHHHc-CCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEEC
Confidence 0 0 112334554 89999987 778764 356677776531 1 244556889999999
Q ss_pred cCCC
Q 010765 195 DGCF 198 (502)
Q Consensus 195 DG~~ 198 (502)
-|..
T Consensus 580 iG~~ 583 (654)
T PRK12769 580 FGFN 583 (654)
T ss_pred ccCC
Confidence 8854
No 355
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.42 E-value=0.0041 Score=62.39 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCC--eEEEEecCCCCCCc-ccchhhhc-cccccceEEEEECCceeeeeccCcCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDVTEPDR-IVDCVEEI-DAQQVLGYALFKDGKSTRLSYPLEKFH 127 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~--~v~lvEr~~~~~~r-~~~~l~~l-~~~~~~g~~~~~~g~~~~~~~~~~~~~ 127 (502)
.....|+|||||.++.-.+..|.+.+. +|.++=|++...+. ......++ ....+..+ +.-....+...- ...
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f--~~l~~~~R~~~l--~~~ 263 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYF--YSLPDEERRELL--REQ 263 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHH--HTS-HHHHHHHH--HHT
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhh--hcCCHHHHHHHH--HHh
Confidence 456789999999999999999999875 89999988542110 00000000 00000000 000000000000 000
Q ss_pred CCCcceeecchHH---HHHH-HHHHHcCCCeEEEece-EEEEEeeCC-eEEEEEEEe-CCCcEEEEecCEEEEecCC
Q 010765 128 ADVSGRSFHNGRF---IQRM-REKAASLPNVRLEQGT-VTSLLEENG-TIKGVQYKT-KDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 128 ~~~~g~~i~r~~l---~~~L-~~~a~~~~~v~i~~~~-v~~~~~~~~-~v~~v~~~~-~~G~~~~v~ad~vI~ADG~ 197 (502)
.....-.++...+ -+.| .+.+...+.++++.++ |+++...++ ++ .+.+++ ..|+..++.+|+||.|+|-
T Consensus 264 ~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 264 RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 0000112222222 1222 2334444468888888 999988874 44 355555 5677778899999999994
No 356
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.41 E-value=0.026 Score=57.27 Aligned_cols=91 Identities=21% Similarity=0.341 Sum_probs=59.7
Q ss_pred CcEEEECCCHHHHHHHHHHhh----CC--CeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGK----DG--RRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHA 128 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~----~G--~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 128 (502)
-+|+|||||++|+-+|..|++ .| .+|+|+ ..+. . +..+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~----~---l~~~---------------------------- 189 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGAS----L---LPGF---------------------------- 189 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCc----c---cccC----------------------------
Confidence 489999999999999999985 34 378787 2211 0 0000
Q ss_pred CCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 129 DVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 129 ~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
...+...+.+.+++. +++++.++ ++++.. + .+. .++|++ +.+|.+|.|.|...
T Consensus 190 --------~~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~--~---~v~--~~~g~~--i~~D~vi~a~G~~p 243 (364)
T TIGR03169 190 --------PAKVRRLVLRLLARR-GIEVHEGAPVTRGPD--G---ALI--LADGRT--LPADAILWATGARA 243 (364)
T ss_pred --------CHHHHHHHHHHHHHC-CCEEEeCCeeEEEcC--C---eEE--eCCCCE--EecCEEEEccCCCh
Confidence 011344555666666 89999987 777642 2 232 356764 55999999999764
No 357
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.35 E-value=0.047 Score=62.14 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=66.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+|+|||||.+|+-+|..+.+.|.+|+++.|+.... + + .
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~---------m---------------------p-----a----- 486 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSE---------M---------------------P-----A----- 486 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccc---------c---------------------c-----c-----
Confidence 3579999999999999999999999999999873200 0 0 0
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeC--CeEEEEEEE-------eC--------CCcEEEEecCEEEEec
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEEN--GTIKGVQYK-------TK--------DGQELRAYAPLTIVCD 195 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~--~~v~~v~~~-------~~--------~G~~~~v~ad~vI~AD 195 (502)
....+.+ +.+. |+++++++ ++++..++ +.+.++++. +. +|++.++.||.||.|-
T Consensus 487 ------~~~e~~~-a~ee-GV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~Ai 558 (944)
T PRK12779 487 ------RVEELHH-ALEE-GINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMAL 558 (944)
T ss_pred ------cHHHHHH-HHHC-CCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcC
Confidence 0111111 2333 88888876 77776542 245555432 01 3555678999999999
Q ss_pred CCCch
Q 010765 196 GCFSN 200 (502)
Q Consensus 196 G~~S~ 200 (502)
|....
T Consensus 559 G~~p~ 563 (944)
T PRK12779 559 GNTAN 563 (944)
T ss_pred CcCCC
Confidence 97754
No 358
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.31 E-value=0.046 Score=57.50 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=65.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
.-.|+|||+|..|+-+|..+.+.|. +|+|++|+.... +..
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~---------~~~------------------------------ 322 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN---------MPG------------------------------ 322 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc---------CCC------------------------------
Confidence 4589999999999999999999996 799999874210 000
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-------C---------CCcEEEEecCEEEEe
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-------K---------DGQELRAYAPLTIVC 194 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-------~---------~G~~~~v~ad~vI~A 194 (502)
... ..+.+.+. |+++++++ ++++..+ ++.+.+|++.. . +|++.++.+|.||.|
T Consensus 323 ---~~~-----e~~~~~~~-GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a 393 (467)
T TIGR01318 323 ---SRR-----EVANAREE-GVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMA 393 (467)
T ss_pred ---CHH-----HHHHHHhc-CCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEEC
Confidence 000 11234444 89999997 8888653 45666666521 1 234556789999988
Q ss_pred cCCCc
Q 010765 195 DGCFS 199 (502)
Q Consensus 195 DG~~S 199 (502)
-|...
T Consensus 394 ~G~~p 398 (467)
T TIGR01318 394 FGFQP 398 (467)
T ss_pred CcCCC
Confidence 88643
No 359
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.066 Score=52.68 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=67.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCccee
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRS 134 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~ 134 (502)
.+|+|||||-+..--|+.|++.+-+|+|+=|+....
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-------------------------------------------- 179 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-------------------------------------------- 179 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC--------------------------------------------
Confidence 499999999999999999999999999999874311
Q ss_pred ecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 135 FHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 135 i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
-...+.+++++.+++.+++++ +.++..++ +.+|.+++..|++.++..|-+..+=|.
T Consensus 180 -----a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 180 -----AEEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred -----cCHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEEecCC
Confidence 033566667766689999997 77777655 667777765455545555555555553
No 360
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0066 Score=59.70 Aligned_cols=38 Identities=34% Similarity=0.329 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhh--CCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGK--DGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~--~G~~v~lvEr~~~~~ 90 (502)
....|.|||+||||..+|..|-+ .+.+|.|+|+.+.+-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 34589999999999999988877 369999999997653
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.13 E-value=0.06 Score=59.06 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.-.|+|||||..|+-+|..|.+.|. +|+|++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4589999999999999999999997 699999874
No 362
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.041 Score=53.59 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=65.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
..||.|||||-+|.-+|+-|+--=-.|+|+|=.+. +
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e-----------L--------------------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-----------L--------------------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh-----------h---------------------------------
Confidence 46899999999999999999865558999986532 1
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEE
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQEL 184 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~ 184 (502)
+-+.+|.+++.+++|+++..+. -+++.-+.++|.|..+++ .+|+..
T Consensus 390 -----kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~ 437 (520)
T COG3634 390 -----KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEH 437 (520)
T ss_pred -----hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCcee
Confidence 1367888999999999999987 677777778899999877 445543
No 363
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.79 E-value=0.14 Score=53.90 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhC--------------------CC-eEEEEecCCCCCCcc-cchhhhccccccceEEEE
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKD--------------------GR-RVHVIERDVTEPDRI-VDCVEEIDAQQVLGYALF 111 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~--------------------G~-~v~lvEr~~~~~~r~-~~~l~~l~~~~~~g~~~~ 111 (502)
.-+|+|||+|.+|+-+|..|.+. |+ +|.|+-|+....... ..-++++... .+..+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l--~~~~~~ 243 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL--KNVRVR 243 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc--CCCcee
Confidence 35899999999999999998876 76 588888874322211 1222222211 112111
Q ss_pred ECCceeeeeccCcCCCCCCcceeecchHHHHHHHHHHHcC--------CCeEEEece-EEEEEe--e-CCeEEEEEEEe-
Q 010765 112 KDGKSTRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASL--------PNVRLEQGT-VTSLLE--E-NGTIKGVQYKT- 178 (502)
Q Consensus 112 ~~g~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~--------~~v~i~~~~-v~~~~~--~-~~~v~~v~~~~- 178 (502)
.+...... .+.... .....-.+.+..+.|.+.+.+. .++.++|.. -+++.. + +++|.++++..
T Consensus 244 ~~~~~~~~-~~~~~~---~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~ 319 (491)
T PLN02852 244 IKEADLTL-SPEDEE---ELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERT 319 (491)
T ss_pred echhhhcc-ccchhh---hhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEe
Confidence 11110000 000000 0000112233566666654332 268888887 677763 2 25677777642
Q ss_pred --------------CCCcEEEEecCEEEEecCCCc
Q 010765 179 --------------KDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 179 --------------~~G~~~~v~ad~vI~ADG~~S 199 (502)
.+|+..++.+|.||-|=|..|
T Consensus 320 ~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 320 VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 135555677888887777554
No 364
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.76 E-value=0.028 Score=54.19 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=29.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhC-CC-eEEEEecC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKD-GR-RVHVIERD 86 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~-G~-~v~lvEr~ 86 (502)
..++.|+|||||-+|++.|..+.++ |- +|.|+|-.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 5679999999999999999988875 44 78888875
No 365
>PRK13984 putative oxidoreductase; Provisional
Probab=95.73 E-value=0.094 Score=57.11 Aligned_cols=31 Identities=19% Similarity=0.521 Sum_probs=25.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC------eEEEEe
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR------RVHVIE 84 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~------~v~lvE 84 (502)
.-+|+|||||..|+-+|..|++.|. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 3589999999999999999998753 566653
No 366
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.73 E-value=0.033 Score=55.81 Aligned_cols=93 Identities=27% Similarity=0.324 Sum_probs=62.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhC--------------CCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeee
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKD--------------GRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRL 119 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~--------------G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~ 119 (502)
-..++||||||+|.-.|..|+.. -++|+++|..+. +|.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~-------iL~--------------------- 269 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH-------ILN--------------------- 269 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh-------HHH---------------------
Confidence 35799999999999999999752 245555554421 000
Q ss_pred eccCcCCCCCCcceeecchHHHHHHHHHH----HcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEe
Q 010765 120 SYPLEKFHADVSGRSFHNGRFIQRMREKA----ASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVC 194 (502)
Q Consensus 120 ~~~~~~~~~~~~g~~i~r~~l~~~L~~~a----~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~A 194 (502)
.|+..|.+.+ .+. ++++..++ |..+..+ .+.+++.+|+..++.+-++|-+
T Consensus 270 -------------------mFdkrl~~yae~~f~~~-~I~~~~~t~Vk~V~~~-----~I~~~~~~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 270 -------------------MFDKRLVEYAENQFVRD-GIDLDTGTMVKKVTEK-----TIHAKTKDGEIEEIPYGLLVWA 324 (491)
T ss_pred -------------------HHHHHHHHHHHHHhhhc-cceeecccEEEeecCc-----EEEEEcCCCceeeecceEEEec
Confidence 1333333333 333 89999998 6666432 2445667898888999999999
Q ss_pred cCCCc
Q 010765 195 DGCFS 199 (502)
Q Consensus 195 DG~~S 199 (502)
.|...
T Consensus 325 tG~~~ 329 (491)
T KOG2495|consen 325 TGNGP 329 (491)
T ss_pred CCCCC
Confidence 99763
No 367
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.69 E-value=0.044 Score=55.79 Aligned_cols=102 Identities=25% Similarity=0.360 Sum_probs=62.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC--eEEEEecCCCCC-CcccchhhhccccccceEEEEECCceeeeeccCcCCCCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDVTEP-DRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADV 130 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~--~v~lvEr~~~~~-~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 130 (502)
...|+|||+|++|..|+..+.+.|. +.+|+-+....+ +|. +........ ++...
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~----------~Ls~~~~~~-~~~~a------------ 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA----------RLSKFLLTV-GEGLA------------ 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch----------hcccceeec-ccccc------------
Confidence 5689999999999999999999886 566665442211 110 111111100 00000
Q ss_pred cceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCC
Q 010765 131 SGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGC 197 (502)
Q Consensus 131 ~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~ 197 (502)
. +..+.. ++. ++++++++ |+.++-.+.. +...+|+... ++.+|.|+|.
T Consensus 131 ------~-r~~e~Y----ke~-gIe~~~~t~v~~~D~~~K~-----l~~~~Ge~~k--ys~LilATGs 179 (478)
T KOG1336|consen 131 ------K-RTPEFY----KEK-GIELILGTSVVKADLASKT-----LVLGNGETLK--YSKLIIATGS 179 (478)
T ss_pred ------c-cChhhH----hhc-CceEEEcceeEEeeccccE-----EEeCCCceee--cceEEEeecC
Confidence 0 012222 333 89999998 8888776654 2357787654 9999999998
No 368
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.65 E-value=0.03 Score=59.85 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=67.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcceee
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGRSF 135 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~~i 135 (502)
.-+|||||.-||-+|..|.+.|.+|.|++-.+..- -++++.
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM------erQLD~--------------------------------- 187 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM------ERQLDR--------------------------------- 187 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHH------HHhhhh---------------------------------
Confidence 36899999999999999999999999998653210 011110
Q ss_pred cchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 136 HNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 136 ~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
.-...|+..++++ |++++.++ .+.+.. ++.+. .++++||... .||+||-|+|.+-.
T Consensus 188 ---~ag~lL~~~le~~-Gi~~~l~~~t~ei~g-~~~~~--~vr~~DG~~i--~ad~VV~a~GIrPn 244 (793)
T COG1251 188 ---TAGRLLRRKLEDL-GIKVLLEKNTEEIVG-EDKVE--GVRFADGTEI--PADLVVMAVGIRPN 244 (793)
T ss_pred ---HHHHHHHHHHHhh-cceeecccchhhhhc-Cccee--eEeecCCCcc--cceeEEEecccccc
Confidence 0133566666666 89998887 455544 44443 3557888864 49999999998754
No 369
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.53 E-value=0.015 Score=51.37 Aligned_cols=32 Identities=38% Similarity=0.597 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.|.|+|||..|.++|..|+++|++|.|+.|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999975
No 370
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.51 E-value=0.14 Score=58.79 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=66.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
.-+|+|||||.+|+=+|..+.+.|. .|+++.|+.... + + .
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---------m---------------------~-----a---- 611 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---------A---------------------P-----A---- 611 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---------C---------------------C-----C----
Confidence 4589999999999999999999998 477887653210 0 0 0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEe-eCCeEEEEEEEe-------C--------CCcEEEEecCEEEEec
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLE-ENGTIKGVQYKT-------K--------DGQELRAYAPLTIVCD 195 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~-~~~~v~~v~~~~-------~--------~G~~~~v~ad~vI~AD 195 (502)
. .. . .+.+++. |+++++++ +.++.. +++++.++++.. + +|+..++.+|.||.|-
T Consensus 612 ~------~~-e-~~~a~ee-GI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~Ai 682 (1006)
T PRK12775 612 R------IE-E-IRHAKEE-GIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYAL 682 (1006)
T ss_pred C------HH-H-HHHHHhC-CCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECC
Confidence 0 00 1 1234444 89999887 777764 356677776531 1 2444568899999999
Q ss_pred CCCch
Q 010765 196 GCFSN 200 (502)
Q Consensus 196 G~~S~ 200 (502)
|....
T Consensus 683 G~~p~ 687 (1006)
T PRK12775 683 GTKAN 687 (1006)
T ss_pred CcCCC
Confidence 97654
No 371
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.31 E-value=0.24 Score=56.42 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhC-CC-eEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKD-GR-RVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~-G~-~v~lvEr~~ 87 (502)
.-+|+|||||.+|+-+|..+.+. |. +|+|++|+.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 45899999999999999998886 86 799999874
No 372
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.22 E-value=0.042 Score=56.58 Aligned_cols=39 Identities=33% Similarity=0.525 Sum_probs=30.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
+.++||||+|-|..-+.+|.+|++.|.+|+.+||++.-+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcC
Confidence 357999999999999999999999999999999997644
No 373
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.19 E-value=0.026 Score=51.05 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
.|.|||+|..|...|..+++.|++|+++|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999999753
No 374
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.12 E-value=0.23 Score=54.44 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=64.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcc
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSG 132 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 132 (502)
.-+|+|||+|..|+-+|..+.+.|. +|++++|+.... + + .
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~---------~---------------------~-----~---- 491 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS---------M---------------------P-----G---- 491 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc---------C---------------------C-----C----
Confidence 4589999999999999988888885 899999873210 0 0 0
Q ss_pred eeecchHHHHHHHHHHHcCCCeEEEece-EEEEEee-CCeEEEEEEEe-------C---------CCcEEEEecCEEEEe
Q 010765 133 RSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEE-NGTIKGVQYKT-------K---------DGQELRAYAPLTIVC 194 (502)
Q Consensus 133 ~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~-~~~v~~v~~~~-------~---------~G~~~~v~ad~vI~A 194 (502)
....+. .+++. |+++++++ ++++..+ ++++.++++.. + .|++.++.+|.||.|
T Consensus 492 ---~~~e~~-----~a~~e-Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~A 562 (639)
T PRK12809 492 ---SRKEVV-----NAREE-GVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMA 562 (639)
T ss_pred ---CHHHHH-----HHHHc-CCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEEC
Confidence 000111 23444 89999987 7788643 45666665421 1 244566789999988
Q ss_pred cCCC
Q 010765 195 DGCF 198 (502)
Q Consensus 195 DG~~ 198 (502)
-|..
T Consensus 563 iG~~ 566 (639)
T PRK12809 563 FGFQ 566 (639)
T ss_pred cCCC
Confidence 8854
No 375
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.92 E-value=0.029 Score=58.92 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
.|+|||.|++|+++|..|.+.|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988553
No 376
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.032 Score=52.48 Aligned_cols=33 Identities=39% Similarity=0.741 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+++|+|+|..|.+.|-.|.+.|++|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 689999999999999999999999999999864
No 377
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.74 E-value=0.4 Score=54.47 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=29.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhC-C-CeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKD-G-RRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~-G-~~v~lvEr~~ 87 (502)
.-+|+|||||.+|+-+|..+.+. | .+|+|+.|+.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 45899999999999999988887 5 3899999874
No 378
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.042 Score=58.03 Aligned_cols=33 Identities=36% Similarity=0.508 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
-+|+|||+|++|+.+|..|+++|.+|+++|+++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999774
No 379
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.61 E-value=0.053 Score=53.84 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
....|.|||+|-.|...|..|++.|++|+++.|+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34579999999999999999999999999999863
No 380
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.61 E-value=0.053 Score=47.36 Aligned_cols=31 Identities=32% Similarity=0.646 Sum_probs=29.4
Q ss_pred EEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 57 VIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 57 VvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
|+|+|+|-.|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999974
No 381
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.60 E-value=0.034 Score=50.53 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=26.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.|.|+|.|..||.+|..|+++|++|+-+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 58999999999999999999999999999985
No 382
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.21 E-value=0.73 Score=46.75 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCc
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFS 199 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S 199 (502)
......|...+++. ||+++.++ |+++ +++. ..+...++. ..++||.||.|.|..|
T Consensus 86 ~sVv~~L~~~l~~~-gV~i~~~~~V~~i--~~~~---~~v~~~~~~-~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 86 APLLRAWLKRLAEQ-GVQFHTRHRWIGW--QGGT---LRFETPDGQ-STIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCEEEEE--eCCc---EEEEECCCc-eEEecCEEEEcCCCcc
Confidence 46788899999887 89999998 8888 2332 223333332 2367999999999987
No 383
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.10 E-value=0.055 Score=53.54 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999853
No 384
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.08 E-value=0.071 Score=52.15 Aligned_cols=34 Identities=35% Similarity=0.458 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999999864
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=93.99 E-value=1.2 Score=45.04 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=71.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCc
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVS 131 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 131 (502)
..+..|||+|.|-+|.++.-.|-..-++|+||..+.. -.+.. -.++.+.
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny--------------------FlFTP-----------LLpS~~v 101 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY--------------------FLFTP-----------LLPSTTV 101 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccc--------------------eEEee-----------ccCCccc
Confidence 5567999999999999999888888899999976521 00000 0001111
Q ss_pred ceeecchHHHHHHHHHHH-cCCCeEEEeceEEEEEeeCCeEEEEEEEeCCC--cEEEEecCEEEEecCCCchh
Q 010765 132 GRSFHNGRFIQRMREKAA-SLPNVRLEQGTVTSLLEENGTIKGVQYKTKDG--QELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 132 g~~i~r~~l~~~L~~~a~-~~~~v~i~~~~v~~~~~~~~~v~~v~~~~~~G--~~~~v~ad~vI~ADG~~S~v 201 (502)
| .++-..+.+-.+..++ ...++.+++...+.++.+...|. +...++++ .+..+.+||+|.|.|+....
T Consensus 102 G-Tve~rSIvEPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~-~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 102 G-TVELRSIVEPIRAIARKKNGEVKYLEAECTKIDPDNKKVH-CRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred c-ceeehhhhhhHHHHhhccCCCceEEecccEeecccccEEE-EeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 1 1221122222333333 23367777777888877666443 33333443 45668899999999998864
No 386
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.085 Score=55.20 Aligned_cols=34 Identities=41% Similarity=0.582 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
...|+|+|+|..|+++|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999974
No 387
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.68 E-value=1.1 Score=47.30 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
.-.|+|||||..|+-+|..+.+.|. +|+++|+.+.
T Consensus 283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4589999999999999877777774 7999998753
No 388
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.62 E-value=0.11 Score=47.97 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
....|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45789999999999999999999999 699999983
No 389
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.58 E-value=0.085 Score=51.63 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 390
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.27 Score=48.57 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
..+||+|+|-|+.=+.++..|+..|.+|+.+||++.-+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 37999999999999999999999999999999997643
No 391
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.53 E-value=0.073 Score=54.66 Aligned_cols=55 Identities=24% Similarity=0.148 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCchh
Q 010765 141 IQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSNL 201 (502)
Q Consensus 141 ~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~v 201 (502)
...+...+... +.+++.++ |+++..++++ |.+...+|+. +.||.||.|-......
T Consensus 212 ~~~~~~~~~~~-g~~i~l~~~V~~I~~~~~~---v~v~~~~g~~--~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 212 SLALALAAEEL-GGEIRLNTPVTRIEREDGG---VTVTTEDGET--IEADAVISAVPPSVLK 267 (450)
T ss_dssp HHHHHHHHHHH-GGGEESSEEEEEEEEESSE---EEEEETTSSE--EEESEEEE-S-HHHHH
T ss_pred hHHHHHHHhhc-CceeecCCcceeccccccc---cccccccceE--EecceeeecCchhhhh
Confidence 33333333333 55899998 9999999874 5566788884 4599999888755443
No 392
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.34 E-value=0.094 Score=42.64 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
....|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45689999999999999999999999999998874
No 393
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.19 E-value=0.14 Score=49.25 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
.+..|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 45789999999999999999999996 8999998743
No 394
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.17 E-value=0.099 Score=51.19 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999999853
No 395
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.15 E-value=0.13 Score=50.92 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999963
No 396
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.14 E-value=0.16 Score=46.98 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
.-.|+|||||.+|..-+..|.+.|.+|+|++.+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 348999999999999999999999999999875
No 397
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.13 E-value=0.14 Score=45.65 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
....|+|+|+|.+|..+|..|...|.+|+++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34799999999999999999999999999999874
No 398
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.13 E-value=0.15 Score=44.90 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEec
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr 85 (502)
..-.|+|||||..|..-|..|.+.|.+|+|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 346899999999999999999999999999953
No 399
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.21 Score=48.70 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
.-+-+|||||-++|-||-+|+-.|++|+|.=|.-- ++ |
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~--------Lr--------G-------------------------- 235 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL--------LR--------G-------------------------- 235 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEee--------cc--------c--------------------------
Confidence 34689999999999999999999999999877511 01 1
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchhhh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRR 203 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR~ 203 (502)
++| ++.+.+.++.+++ |+.+...+ .+.+++.+++-..|.++. .+++..+-.+|-|+-|=|..+.+++
T Consensus 236 -FDq-dmae~v~~~m~~~-Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~ 304 (503)
T KOG4716|consen 236 -FDQ-DMAELVAEHMEER-GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDD 304 (503)
T ss_pred -ccH-HHHHHHHHHHHHh-CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhh
Confidence 111 3556667778887 89998887 677777655434455554 2333333348889999998877655
No 400
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.03 E-value=0.14 Score=42.38 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 57 VIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 57 VvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
|+|+|.|..|..+|-.|.+.+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999985
No 401
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.95 E-value=0.14 Score=43.79 Aligned_cols=35 Identities=29% Similarity=0.672 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
+..|+|+|+|-.|...|..|++.|+ +++|+|.+.-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3589999999999999999999999 7999998843
No 402
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.93 E-value=0.11 Score=44.56 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 57 VIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 57 VvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
++|+|||+.+.++|..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999854
No 403
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.92 E-value=0.12 Score=51.13 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|.|||+|..|...|..++.+|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999999854
No 404
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=92.87 E-value=10 Score=39.57 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=26.3
Q ss_pred CCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCc
Q 010765 316 PGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKP 352 (502)
Q Consensus 316 ~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~ 352 (502)
++++++||.. .|-|++-++.++..+|+.|.+
T Consensus 428 ~~l~l~G~~~------~g~~i~~~i~sg~~~a~~~~~ 458 (462)
T TIGR00562 428 PGVFLTGNSF------EGVGIPDCIDQGKAAASDVLT 458 (462)
T ss_pred CCEEEecccc------CCCcHHHHHHHHHHHHHHHHH
Confidence 5899999983 477999999999999988854
No 405
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.84 E-value=0.12 Score=50.65 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999999975
No 406
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.79 E-value=0.13 Score=50.72 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|.|+|+|-.|...|..|++.|++|++++|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999999999999863
No 407
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=92.73 E-value=2.6 Score=44.06 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHcCCCeEEEece-EEEEEeeC-CeEEEEEEEeCCCcE-EEEecCEEEEecCCCchhhhhh
Q 010765 138 GRFIQRMREKAASLPNVRLEQGT-VTSLLEEN-GTIKGVQYKTKDGQE-LRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 138 ~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~-~~v~~v~~~~~~G~~-~~v~ad~vI~ADG~~S~vR~~l 205 (502)
..+.+.|.+.+++. |++|+.++ |+++..++ +.+++|++.+.+|++ .++.||.||.|-..+. +++.+
T Consensus 213 ~~l~~~l~~~l~~~-g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL 281 (453)
T TIGR02731 213 ERLCQPIVDYITSR-GGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLL 281 (453)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhC
Confidence 34677888888777 78999998 99997644 446677765433322 2467999999987654 55544
No 408
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=92.71 E-value=3.7 Score=42.10 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCC
Q 010765 141 IQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCF 198 (502)
Q Consensus 141 ~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~ 198 (502)
.+.|.+.+++. +++|+.++ |+++..+++++. +.+. .+|+. +.||.||.|.-..
T Consensus 200 ~~~l~~~l~~~-g~~i~~~~~V~~i~~~~~~~~-~~~~-~~g~~--~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSR-GGEVRLGTRVRSIEANAGGIR-ALVL-SGGET--LPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHc-CCEEEcCCeeeEEEEcCCcce-EEEe-cCCcc--ccCCEEEEcCCHH
Confidence 34466667666 78999998 999988877543 2222 34553 5599999986644
No 409
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.68 E-value=0.21 Score=42.80 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCe-EEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~-v~lvEr~~ 87 (502)
....|+|+|+|-+|-+++..|++.|.+ ++|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 456899999999999999999999986 99999863
No 410
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.65 E-value=0.14 Score=50.51 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEec
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIER 85 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr 85 (502)
+|.|+|+|..|.+.|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999998
No 411
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.63 E-value=0.18 Score=46.24 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
...+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 34789999999999999999999999999999875
No 412
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.54 E-value=0.18 Score=49.38 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 413
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.45 E-value=0.21 Score=46.12 Aligned_cols=34 Identities=38% Similarity=0.443 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3458999999999999999999999999999864
No 414
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.40 E-value=0.19 Score=50.36 Aligned_cols=36 Identities=39% Similarity=0.598 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
.+..|+|||+|-.|..+|..|++.|+ +++|+|++.-
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 35689999999999999999999999 8999999853
No 415
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=1.6 Score=40.26 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCCCCCcce
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFHADVSGR 133 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 133 (502)
+...+|||||=+-+-=|.+|.+.+-+|.++-|+.. +
T Consensus 157 nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~-----------f--------------------------------- 192 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDH-----------F--------------------------------- 192 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhh-----------h---------------------------------
Confidence 35689999999999999999999999999988732 1
Q ss_pred eecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEe-CCCcEEEEecCEEEEecCCCchhhhhh
Q 010765 134 SFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKT-KDGQELRAYAPLTIVCDGCFSNLRRSL 205 (502)
Q Consensus 134 ~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~-~~G~~~~v~ad~vI~ADG~~S~vR~~l 205 (502)
+--..+.+++.+.|++++++++ +++..-+...+-++.+++ +.|+...+..+=+.-+=| +|+--+.+
T Consensus 193 -----RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IG-H~Pat~~l 260 (322)
T KOG0404|consen 193 -----RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIG-HSPATKFL 260 (322)
T ss_pred -----hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEec-CCchhhHh
Confidence 1234677888899999999998 555555444444566655 566665555655555555 44443333
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.37 E-value=0.15 Score=49.81 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999998753
No 417
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=92.36 E-value=9.1 Score=40.08 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCEEEEeCCCCCCCCCCchhHhHHHHHHHHHHHhcCc
Q 010765 316 PGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKP 352 (502)
Q Consensus 316 ~rv~LvGDAAh~~~P~~G~G~n~al~Da~~La~~L~~ 352 (502)
++++++||. +.|.||+-++.++...|+.+.+
T Consensus 429 ~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~ 459 (463)
T PRK12416 429 PNIYLAGAS------YYGVGIGACIGNGKNTANEIIA 459 (463)
T ss_pred CCeEEeccc------cccccHHHHHHHHHHHHHHHHH
Confidence 789999999 4466899999999999988753
No 418
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.30 E-value=0.19 Score=50.96 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
...+|+|+|+|.+|+.+|..|.+.|.+|.++|+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34579999999999999999999999999999874
No 419
>PRK04148 hypothetical protein; Provisional
Probab=92.20 E-value=0.15 Score=43.38 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999999864
No 420
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.13 E-value=0.17 Score=50.60 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+|.|+|.|.+||+.|..|++.|++|+.+|.++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 688999999999999999999999999999853
No 421
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.03 E-value=0.2 Score=51.39 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
.-.|+|+|+|+.|+.+|..|+..|.+|+++|+++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 45899999999999999999999999999998753
No 422
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.94 E-value=0.24 Score=49.62 Aligned_cols=35 Identities=37% Similarity=0.639 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45789999999999999999999999 999999974
No 423
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.92 E-value=0.25 Score=46.93 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 45789999999999999999999998 8999998744
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.88 E-value=0.2 Score=52.67 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
....|+|+|+|++|+.++..+...|.+|.++|+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999999999999999999999999985
No 425
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.75 E-value=0.28 Score=45.28 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
-.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 346799999999999999999999998 8999998743
No 426
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.73 E-value=0.3 Score=43.55 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHhhCCCeEEEEecCC
Q 010765 52 GSPTDVIIVGAGV-AGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~-aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
-...+|+|||+|- +|..+|..|.++|.+|.++.|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 4567999999996 69999999999999999999873
No 427
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.70 E-value=0.24 Score=48.95 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC--eEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGR--RVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~--~v~lvEr~~~ 88 (502)
+|.|||+|.+|+++|+.|++.|+ .+.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 59999999999999999999994 8999999754
No 428
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.68 E-value=0.22 Score=51.50 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 429
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.58 E-value=0.3 Score=45.43 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
....|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45789999999999999999999999 599999874
No 430
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.25 E-value=0.28 Score=49.27 Aligned_cols=31 Identities=32% Similarity=0.541 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
+|.|||+|..|...|..|++.|++|++++|+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999985
No 431
>PRK08328 hypothetical protein; Provisional
Probab=91.23 E-value=0.32 Score=45.90 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 35689999999999999999999998 7999988743
No 432
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.20 E-value=0.32 Score=43.68 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999984
No 433
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.14 E-value=0.32 Score=46.32 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45799999999999999999999998 899999874
No 434
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.06 E-value=2.8 Score=42.79 Aligned_cols=29 Identities=38% Similarity=0.384 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCCCc
Q 010765 64 VAGAALAHTLGKDGRRVHVIERDVTEPDR 92 (502)
Q Consensus 64 ~aGl~~A~~La~~G~~v~lvEr~~~~~~r 92 (502)
++||+||+.|+++|++|+|+|++...++|
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 68999999999999999999999776544
No 435
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.91 E-value=0.3 Score=48.73 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|.|+|+|-.|.+.|..|++.|++|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999964
No 436
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.83 E-value=0.37 Score=47.56 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEecC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERD 86 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~ 86 (502)
.|.|||+|..|+..|..|+.+|+ +|+++|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 69999999999999999999887 89999985
No 437
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.82 E-value=0.45 Score=47.16 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=32.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCC--eEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~--~v~lvEr~~~ 88 (502)
....+|.|||+|-+|.++|+.|+..|+ .+.|+|.+..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 345699999999999999999999998 7999998643
No 438
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.81 E-value=0.4 Score=45.67 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
....++|+|||+.+..+|..++..|++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457999999999999999999999999999997744
No 439
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.66 E-value=0.29 Score=52.70 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+-+|+|+|.|..|..+|..|.++|++|+++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 56899999999999999999999999999999853
No 440
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.60 E-value=0.39 Score=45.20 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.+..|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45799999999999999999999998 899999874
No 441
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.58 E-value=0.34 Score=47.95 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
..|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999874
No 442
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=0.4 Score=47.90 Aligned_cols=38 Identities=32% Similarity=0.506 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTEP 90 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~~ 90 (502)
+++||+|+|-|..=+.++..|+..|.+|+.+||++.-+
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYG 40 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCC
Confidence 45999999999999999999999999999999997543
No 443
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.54 E-value=0.46 Score=41.08 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=29.3
Q ss_pred cEEEECC-CHHHHHHHHHHhhCCC--eEEEEecCC
Q 010765 56 DVIIVGA-GVAGAALAHTLGKDGR--RVHVIERDV 87 (502)
Q Consensus 56 dVvIVGa-G~aGl~~A~~La~~G~--~v~lvEr~~ 87 (502)
+|.|||+ |..|.++|+.|...|+ ++.|+|+..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 9999999999999886 699999984
No 444
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.37 E-value=0.44 Score=47.10 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
.+|.|+|+|-.|.+.|..|++.|++|.+++|+..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999999999999999999999999753
No 445
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.34 E-value=0.47 Score=49.59 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...|+|+|+|.+|+++|..|+++|.+|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34799999999999999999999999999998754
No 446
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.31 E-value=0.29 Score=50.61 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999999753
No 447
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.16 E-value=0.43 Score=49.82 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
-.|+|+|+|..|+++|..|++.|.+|.+.|++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 4699999999999999999999999999998753
No 448
>PRK08223 hypothetical protein; Validated
Probab=90.09 E-value=0.45 Score=46.14 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
-.+..|+|||+|-.|..+|..|++.|+ ++.|+|.+.-
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 345799999999999999999999999 8999998743
No 449
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.07 E-value=0.56 Score=40.48 Aligned_cols=33 Identities=30% Similarity=0.595 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
.|+|||+|-.|...|..|++.|+ +++|+|.+.-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999999 7999998854
No 450
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.04 E-value=0.36 Score=47.42 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
.|.|||+|..|...|..|+++|++|.++|+++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 599999999999999999999999999998753
No 451
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=90.00 E-value=0.45 Score=46.42 Aligned_cols=34 Identities=41% Similarity=0.538 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
...|+|+|+|-+|.++|..|++.|. +++|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3579999999999999999999998 799999873
No 452
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.98 E-value=0.49 Score=44.60 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
.+..|+|||.|-.|..+|..|++.|+ +++|+|.+.-
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 35689999999999999999999999 8999998743
No 453
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.86 E-value=0.46 Score=44.66 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCe---EEEEecC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRR---VHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~---v~lvEr~ 86 (502)
+..|+|+|||-+|...|..|.+.|.+ +.|++|+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 35899999999999999999999985 9999987
No 454
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.70 E-value=1.2 Score=44.74 Aligned_cols=99 Identities=28% Similarity=0.343 Sum_probs=64.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhC----CCeEE-EEecCCCCCCcccchhhhccccccceEEEEECCceeeeeccCcCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKD----GRRVH-VIERDVTEPDRIVDCVEEIDAQQVLGYALFKDGKSTRLSYPLEKFH 127 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~----G~~v~-lvEr~~~~~~r~~~~l~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~ 127 (502)
+...|-|||+|.-|.-+|+.|++. |..|. |+|..- +.+.
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~----------------------------------nm~k-- 389 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY----------------------------------NMEK-- 389 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----------------------------------Chhh--
Confidence 345799999999999999999885 33332 222110 0000
Q ss_pred CCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEecCCCch
Q 010765 128 ADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCDGCFSN 200 (502)
Q Consensus 128 ~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~ADG~~S~ 200 (502)
|-...|-++-.+..++. ||.++.+. |.++...... +.++.+||.+ ++.|+||.|.|.--+
T Consensus 390 -------iLPeyls~wt~ekir~~-GV~V~pna~v~sv~~~~~n---l~lkL~dG~~--l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 390 -------ILPEYLSQWTIEKIRKG-GVDVRPNAKVESVRKCCKN---LVLKLSDGSE--LRTDLVVVAVGEEPN 450 (659)
T ss_pred -------hhHHHHHHHHHHHHHhc-Cceeccchhhhhhhhhccc---eEEEecCCCe--eeeeeEEEEecCCCc
Confidence 00112344445555554 89999887 8887766554 4577889986 459999999997543
No 455
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.67 E-value=0.86 Score=51.44 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=24.5
Q ss_pred CcEEEECCCHHHHHHHHHHhh---CCCeEEEEecC
Q 010765 55 TDVIIVGAGVAGAALAHTLGK---DGRRVHVIERD 86 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~---~G~~v~lvEr~ 86 (502)
.+|+|||||.+|+=+|....+ .+..+.+.+..
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~ 585 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYI 585 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhh
Confidence 579999999999988875543 46677776664
No 456
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.61 E-value=0.45 Score=48.62 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..-.|+|+|.|+.|..+|..|...|.+|+++|+++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 345899999999999999999999999999998864
No 457
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=89.60 E-value=0.51 Score=44.76 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=31.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCC-----------CeEEEEecCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDG-----------RRVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G-----------~~v~lvEr~~ 87 (502)
.....|+|||+|-.|+..+-.|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45689999999999999999999974 3889998874
No 458
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.40 E-value=0.49 Score=47.05 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|.|||+|..|...|..|++.|++|.+++|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999974
No 459
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.40 E-value=0.55 Score=46.85 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.|.|||+|..|.+.|..|++.|++|++++|++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999999964
No 460
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=89.32 E-value=0.58 Score=43.02 Aligned_cols=36 Identities=28% Similarity=0.561 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
.+..|+|||+|-.|...|..|++.|+ +++|+|.+.-
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 35799999999999999999999999 5999998743
No 461
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.29 E-value=0.52 Score=46.57 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCC--CeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDG--RRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G--~~v~lvEr~~~ 88 (502)
.|.|||+|-+|.++|..|+..| ..+.|+|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 47999999754
No 462
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.26 E-value=0.54 Score=46.43 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.+|.|||+|..|.+.|..|++.|+ +|.|+|++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999964
No 463
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.21 E-value=0.6 Score=45.88 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
....|+|+|.|.+|..+|..|.+.|.+|.+++|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35689999999999999999999999999999984
No 464
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.21 E-value=0.49 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.-+|+|||||.+|+-+|..|++.|. +|++++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4589999999999999999999998 899999863
No 465
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.17 E-value=0.46 Score=47.95 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=27.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.|+|+|+||.||.++..++..|. +|+++|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999888888896 677778764
No 466
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=89.15 E-value=1.8 Score=44.25 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=26.0
Q ss_pred EEEECCCHHHHHHHHHHhhC--CCeEEEEecCCC
Q 010765 57 VIIVGAGVAGAALAHTLGKD--GRRVHVIERDVT 88 (502)
Q Consensus 57 VvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~~ 88 (502)
++|||+|++|+++|..|.+. +.+++++.+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~ 34 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPK 34 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 58999999999999998885 457777777643
No 467
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.07 E-value=0.48 Score=46.11 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
.|.|||.|..|.+.|..|+++|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999874
No 468
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.05 E-value=0.52 Score=41.49 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=27.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
...++|+|-|..|-.+|..|+..|.+|+|.|.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4579999999999999999999999999999986
No 469
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.96 E-value=0.62 Score=42.79 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.+..|+|||+|..|+..|..|++.|+ +++|+|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45789999999999999999999999 699999874
No 470
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.93 E-value=0.6 Score=49.12 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
...|+|+|+|++|+.++..+...|.+|.++|++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999999853
No 471
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.86 E-value=0.68 Score=46.03 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
..|.|||+|-.|.+.|..|+..|+ ++.|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 9999999754
No 472
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.80 E-value=3 Score=42.09 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=78.6
Q ss_pred cccCCCCCCCCCcEEEECCCHHHHHHHHHHhh--CCCeEEEEecCCCCC---Cccc-chhhhccccccceEEE-EECCce
Q 010765 44 SSVNAGKNGSPTDVIIVGAGVAGAALAHTLGK--DGRRVHVIERDVTEP---DRIV-DCVEEIDAQQVLGYAL-FKDGKS 116 (502)
Q Consensus 44 ~~~~~~~~~~~~dVvIVGaG~aGl~~A~~La~--~G~~v~lvEr~~~~~---~r~~-~~l~~l~~~~~~g~~~-~~~g~~ 116 (502)
+.|.......+.+-+|+|+|-+-.+++.+... .+.+|++|-..+..+ +... ++|-.=+......+.+ -+.|+.
T Consensus 168 ~~P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 168 SPPSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKE 247 (659)
T ss_pred CCCccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCcc
Confidence 34444444667889999999877766555433 467888887665432 1111 3332111112222222 123444
Q ss_pred eeeeccCcCCCCCCcceeecchHHHHHHHHHHHcCCCeEEEece-EEEEEeeCCeEEEEEEEeCCCcEEEEecCEEEEec
Q 010765 117 TRLSYPLEKFHADVSGRSFHNGRFIQRMREKAASLPNVRLEQGT-VTSLLEENGTIKGVQYKTKDGQELRAYAPLTIVCD 195 (502)
Q Consensus 117 ~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~v~i~~~~-v~~~~~~~~~v~~v~~~~~~G~~~~v~ad~vI~AD 195 (502)
..+.|. +.++.++..+|... .++||-+..|. |+.+..++..| ..+||.++. +|-...|+
T Consensus 248 Rsiffe-------pd~FfvspeDLp~~------~nGGvAvl~G~kvvkid~~d~~V-----~LnDG~~I~--YdkcLIAT 307 (659)
T KOG1346|consen 248 RSIFFE-------PDGFFVSPEDLPKA------VNGGVAVLRGRKVVKIDEEDKKV-----ILNDGTTIG--YDKCLIAT 307 (659)
T ss_pred ceeEec-------CCcceeChhHCccc------ccCceEEEeccceEEeecccCeE-----EecCCcEee--hhheeeec
Confidence 344433 23444444444432 24689999998 99998877643 357888654 88888899
Q ss_pred CCCch
Q 010765 196 GCFSN 200 (502)
Q Consensus 196 G~~S~ 200 (502)
|.+-+
T Consensus 308 G~~Pk 312 (659)
T KOG1346|consen 308 GVRPK 312 (659)
T ss_pred CcCcc
Confidence 98743
No 473
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.80 E-value=0.53 Score=49.32 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHhhC--CCeEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKD--GRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~--G~~v~lvEr~~ 87 (502)
+|.|||.|-.|+.+|..|+++ |++|+.+|.++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 599999999999999999998 58899999874
No 474
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.71 E-value=0.54 Score=46.31 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 57 VIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 57 VvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
|.|||+|-.|..+|..|+.+|+ +|+|+|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999984
No 475
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.70 E-value=0.48 Score=50.14 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
..|.|||+|.-|...|..|++.|++|+++|+++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 36999999999999999999999999999998653
No 476
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.64 E-value=0.53 Score=48.14 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+|.|||.|..|+.+|..|+. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999998885 999999999853
No 477
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=88.47 E-value=0.7 Score=46.89 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
-.+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 345789999999999999999999998 899999874
No 478
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=88.38 E-value=0.77 Score=41.95 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=30.1
Q ss_pred CCcEEEECC-CHHHHHHHHHHhhCCCeEEEEecC
Q 010765 54 PTDVIIVGA-GVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 54 ~~dVvIVGa-G~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
...|+|+|| |..|..+|..|++.|.+|.++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999997 999999999999999999999886
No 479
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.32 E-value=0.64 Score=49.21 Aligned_cols=33 Identities=36% Similarity=0.556 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
-.|+|+|.|.+|++++..|.+.|.+|++.|+++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 479999999999999999999999999999653
No 480
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.28 E-value=0.63 Score=47.09 Aligned_cols=34 Identities=29% Similarity=0.669 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCC-CeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDG-RRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G-~~v~lvEr~~~ 88 (502)
-+|+|+|+|-.|..+|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 37999999999999999999999 89999999854
No 481
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.23 E-value=0.69 Score=46.71 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45789999999999999999999999 899999874
No 482
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.12 E-value=0.66 Score=47.74 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
....|+|+|.|..|..+|..|...|.+|+++|+++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 345799999999999999999999999999998753
No 483
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.97 E-value=0.62 Score=48.88 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|+|+|.|.+|+++|..|.+.|++|.+.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4799999999999999999999999999998753
No 484
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=87.93 E-value=0.79 Score=43.25 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
.|+|||+|-.|+..+..|++.|+ +++|+|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 799999874
No 485
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.90 E-value=0.89 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC--eEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR--RVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~--~v~lvEr~~ 87 (502)
..+|.|||+|-+|.++|+.|+..|. .+.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999999886 699999874
No 486
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.80 E-value=0.35 Score=40.90 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=28.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERD 86 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~ 86 (502)
....+|-|||+|-+|.++|..|.+.|+.|.-+..+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 55689999999999999999999999999887654
No 487
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.76 E-value=0.61 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
.|.|||+|..|...|..|+++|++|+|+|+++.
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 699999999999999999999999999999753
No 488
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.67 E-value=0.62 Score=51.68 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
..|.|||||..|...|..+++.|++|+|+|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999999854
No 489
>PRK06153 hypothetical protein; Provisional
Probab=87.40 E-value=0.64 Score=46.80 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
....|+|||+|-.|..++..|++.|+ +++|+|.+..
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 35689999999999999999999998 8999998743
No 490
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.31 E-value=0.89 Score=44.50 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCe-EEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRR-VHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~-v~lvEr~~ 87 (502)
...|+|+|||-+|.++|..|++.|.+ |.|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 45799999999999999999999996 99999874
No 491
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.28 E-value=0.68 Score=51.31 Aligned_cols=34 Identities=18% Similarity=0.389 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
-.|.|||||..|...|..++++|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999999864
No 492
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.26 E-value=0.69 Score=47.79 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
...|+|+|-|.+|+++|..|.+.|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 468999999999999999999999999999988665
No 493
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.10 E-value=0.87 Score=48.34 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 55 TDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 55 ~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
-.|.|||+|.-|...|..|++.|++|+++|+++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 36999999999999999999999999999998653
No 494
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.10 E-value=0.68 Score=48.41 Aligned_cols=33 Identities=42% Similarity=0.643 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 010765 56 DVIIVGAGVAGAALAHTLGKDGRRVHVIERDVT 88 (502)
Q Consensus 56 dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~ 88 (502)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 599999999999999999999999999999753
No 495
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.09 E-value=0.85 Score=46.50 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCC
Q 010765 52 GSPTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDV 87 (502)
Q Consensus 52 ~~~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~ 87 (502)
-.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 346789999999999999999999999 799999874
No 496
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=87.03 E-value=0.77 Score=42.85 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCC-eEEEEecCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGR-RVHVIERDVT 88 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~-~v~lvEr~~~ 88 (502)
+..|+|||.|-+|.-++-+|+|.|+ +.+|+|.+.-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 4689999999999999999999999 8999999854
No 497
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.01 E-value=1.1 Score=41.12 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
...|+|+|.|-.|..+|..|.+.|.+|++.|+++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3579999999999999999999999999998873
No 498
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.99 E-value=0.96 Score=44.21 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 53 SPTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 53 ~~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
....|+|+|.|..|.++|..|+..|.+|++++|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999974
No 499
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.89 E-value=0.9 Score=42.45 Aligned_cols=32 Identities=31% Similarity=0.597 Sum_probs=29.3
Q ss_pred cEEEEC-CCHHHHHHHHHHhhCCCeEEEEecCC
Q 010765 56 DVIIVG-AGVAGAALAHTLGKDGRRVHVIERDV 87 (502)
Q Consensus 56 dVvIVG-aG~aGl~~A~~La~~G~~v~lvEr~~ 87 (502)
+|.||| +|..|.++|..|++.|++|.++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998864
No 500
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.86 E-value=0.6 Score=42.97 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 010765 54 PTDVIIVGAGVAGAALAHTLGKDGRRVHVIERDVTE 89 (502)
Q Consensus 54 ~~dVvIVGaG~aGl~~A~~La~~G~~v~lvEr~~~~ 89 (502)
...|.|||||.-|.-.|-..+..|++|.|+|++...
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 457999999999999999999999999999998653
Done!