BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010766
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/122 (71%), Positives = 105/122 (86%)
Query: 268 RVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTG 327
RVP+FE MD++LLDA+C+ LKP L+TEKS++VREGDPV EMLF++RG L S TT GGR+G
Sbjct: 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 69
Query: 328 FFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF 387
F+N LK GDFCG+ LLTWALDP+S SN P STRTV+ALTEVEAF+L+AD+LK VASQF
Sbjct: 70 FYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF 129
Query: 388 RR 389
RR
Sbjct: 130 RR 131
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 385 SQF 387
++
Sbjct: 178 EEY 180
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R RI Y ++++Q + +EE +L L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNCRK 69
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + +M L+ ++ +I+REG ++M F+ G +VS T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ L G + GE L R T +V+A T +SL D+ V
Sbjct: 129 K-----ETKLADGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 174
Query: 385 SQF 387
++
Sbjct: 175 EEY 177
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 135 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 180
Query: 385 SQF 387
++
Sbjct: 181 EEY 183
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 385 SQF 387
++
Sbjct: 178 EEY 180
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 129
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 130 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 175
Query: 385 SQF 387
++
Sbjct: 176 EEY 178
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ + L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EMKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 385 SQF 387
++
Sbjct: 178 EEY 180
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R RI Y ++++Q + +EE +L L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNCRK 69
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + +M L+ ++ +I+REG ++M F+ G +VS T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ L G + GE L R T V+A T +SL D+ V
Sbjct: 129 K-----ETKLADGSYFGEICLL---------TRGRRTARVRADTYCRLYSLSVDNFNEVL 174
Query: 385 SQF 387
++
Sbjct: 175 EEY 177
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R +I Y ++++Q + +E+ +L L LR +I
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + AM LK ++ +I+REG ++M F+ G +VS T G
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 133
Query: 325 RTGFFNAVYLKAGDFCGE-ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSV 383
+ + L G + GE +LLT R T +V+A T +SL D+ V
Sbjct: 134 K-----EMKLSDGSYFGEISLLT----------RGRRTASVRADTYSRLYSLSVDNFNEV 178
Query: 384 ASQF 387
++
Sbjct: 179 LEEY 182
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP + R RI Y ++++Q + +EE +L L + LR +I
Sbjct: 17 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNXRK 75
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + +M L+ ++ +I+REG ++M F+ G +VS T G
Sbjct: 76 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ L G + GE L R T +V+A T +SL D+ V
Sbjct: 135 K-----ETKLADGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 180
Query: 385 SQF 387
++
Sbjct: 181 EEY 183
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+MS LP ++R +I Y ++++Q + +EE +L L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEHRYQ-GKIFDEENILSELNDPLREEIVNFNCRK 75
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ +P+F D + AM L+ ++ +I+REG ++M F+ G T
Sbjct: 76 LVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSK 135
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ Y G+ C LLT + T +V+A T +SL D+ V
Sbjct: 136 EMKLTDGSYF--GEIC---LLT----------KGRRTASVRADTYCRLYSLSVDNFNEVL 180
Query: 385 SQF 387
++
Sbjct: 181 EEY 183
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 15/187 (8%)
Query: 201 EMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRH 260
+ R K + E++M +R LP +LR++I Y +Y+++ + +E + R + + +R+D+ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANY 67
Query: 261 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT 320
C DL+ VP F D + + L+ ++ ++++EG + M F+ +G +V
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG-IVDII 126
Query: 321 TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDL 380
G A L G + GE L R +V+ T FSL
Sbjct: 127 MSDGVI----ATSLSDGSYFGEICLL---------TRERRVASVKCETYCTLFSLSVQHF 173
Query: 381 KSVASQF 387
V +F
Sbjct: 174 NQVLDEF 180
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
K + EQ+ S LP + R +I Y ++++Q + +E+ +L L LR +I C
Sbjct: 14 KYKQVEQYXSFHKLPADFRQKIHDYYEHRYQ-GKXFDEDSILGELNGPLREEIVNFNCRK 72
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG 324
L+ P+F D + A LK ++ +I+REG ++ F+ G +VS T G
Sbjct: 73 LVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHG-VVSVLTKGN 131
Query: 325 RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVA 384
+ L G + GE L R T +V+A T +SL D+ V
Sbjct: 132 K-----EXKLSDGSYFGEICLL---------TRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Query: 385 SQF 387
++
Sbjct: 178 EEY 180
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 205 KRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264
+ +D + ++ LP+ L R+ Q W G++ LL++ P +LR DI HL +
Sbjct: 17 RTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKE 76
Query: 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL 316
LL ++P+FE L ++ +K F++R+GD ++ + FV G++
Sbjct: 77 LL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 111/305 (36%), Gaps = 85/305 (27%)
Query: 111 IKNSSMFNFGISIDALQSRVVEEHDFPKKFFY---CFWWGLRNLSSLG-QNLKTSTFVGE 166
I +++F + AL + V+E P+KF WW + LS+ G + +F G
Sbjct: 130 IGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGR 189
Query: 167 VFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRI 226
V A + +SG+ +F L G +
Sbjct: 190 VL-AGAVMMSGIGIFGLWAGILATGF---------------------------------- 214
Query: 227 RRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDH 286
+QE R R D R+ W L+ VP+F+K+ +L +
Sbjct: 215 -------YQEVR---------------RGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRA 250
Query: 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLT 346
L+ + I R G+P + M FV+ G++ T N V L G F GE L
Sbjct: 251 LRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--------NPVELGPGAFFGEMALI 302
Query: 347 WALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQW 406
S P S TV A T V SL + D + + S S ++ FR +++
Sbjct: 303 --------SGEPRSA-TVSAATTVSLLSLHSADFQMLCS-----SSPEIAEIFRKTALER 348
Query: 407 RTWAA 411
R AA
Sbjct: 349 RGAAA 353
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Query: 251 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 309
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 1 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 58
Query: 310 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 369
FV+ G++ T N V L G F GE L + +P+S+ TV A T
Sbjct: 59 FVVEGSVSVATP--------NPVELGPGAFFGEMALI-SGEPESA--------TVSAATT 101
Query: 370 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAA 411
V SL + D + + S S ++ FR +++ R AA
Sbjct: 102 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALERRGAAA 138
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 251 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 309
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 3 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 60
Query: 310 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 369
FV+ G++ T N V L G F GE L S P S TV A T
Sbjct: 61 FVVEGSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATT 103
Query: 370 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAA 411
V SL + D + + S S ++ FR +++ R AA
Sbjct: 104 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALERRGAAA 140
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 251 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 309
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 1 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 58
Query: 310 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 369
FV+ G++ T N V L G F GE L S P S TV A T
Sbjct: 59 FVVEGSVSVATP--------NPVELGPGAFFGEMALI--------SGEPWSA-TVSAATT 101
Query: 370 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAA 411
V SL + D + + S S ++ FR +++ R AA
Sbjct: 102 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALERRGAAA 138
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 251 KDLRR-DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEML 309
+++RR D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M
Sbjct: 1 QEVRRGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 58
Query: 310 FVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 369
FV+ G++ T N V L G F GE L S P S TV A T
Sbjct: 59 FVVEGSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATT 101
Query: 370 VEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAA 411
V SL + D + + S S ++ FR +++ R AA
Sbjct: 102 VSLLSLHSADFQMLCSS-----SPEIAEIFRKTALERRGAAA 138
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 254 RRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMR 313
R D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M FV+
Sbjct: 3 RGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 60
Query: 314 GNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAF 373
G++ T N V L G F GE L S P S TV A T V
Sbjct: 61 GSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATTVSLL 103
Query: 374 SLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAA 411
SL + D + + S S ++ FR +++ R AA
Sbjct: 104 SLHSADFQMLCSS-----SPEIAEIFRKTALEARGAAA 136
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 254 RRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMR 313
R D R+ W L+ VP+F+K+ +L + L+ + I R G+P + M FV+
Sbjct: 3 RGDFVRN--WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVE 60
Query: 314 GNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAF 373
G++ T N V L G F GE L S P S TV A T V
Sbjct: 61 GSVSVATP--------NPVELGPGAFFGEMALI--------SGEPRSA-TVSAATTVSLL 103
Query: 374 SLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAA 411
SL + D + + S S ++ FR +++ R AA
Sbjct: 104 SLHSADFQMLCSS-----SPEIAEIFRKTALERRGAAA 136
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 243 EGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREG 302
E +L+ PKD+R DI HL + P F D L A+ + V I G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 303 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTR 362
+ V+ + FV+ G+L L GD G+ A QS +N
Sbjct: 66 ESVDSLCFVVSGSLEVIQDDE------VVAILGKGDVFGDVFWKEATLAQSCAN------ 113
Query: 363 TVQALTEVEAFSLMADDLKSV 383
V+ALT + + D L+ V
Sbjct: 114 -VRALTYCDLHVIKRDALQKV 133
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 258 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 317
KR + + L +V + E +D + D L+PV + + IV +G+P +E ++ G+
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 318 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV 364
F L D+ GE L NRP + V
Sbjct: 209 VLQRRSENEEFVEVGRLGPSDYFGEIALLM--------NRPRAATVV 247
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 258 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 317
KR + + L +V + E +D + D L+PV + + IV +G+P +E ++ G+
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 318 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV 364
F L D+ GE L NRP + V
Sbjct: 211 VLQRRSENEEFVEVGRLGPSDYFGEIALLM--------NRPKAATVV 249
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 258 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 317
KR + + L +V + E +D + D L+PV + + IV +G+P +E ++ G+
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 318 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV 364
F L D+ GE L NRP + V
Sbjct: 207 VLQRRSENEEFVEVGRLGPSDYFGEIALLM--------NRPRAATVV 245
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 322
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 4 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 63
Query: 323 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 382
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 64 DGRENLLT--IMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 112
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 322
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 323 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 382
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 88 DGRENLLT--IMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 136
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 322
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 6 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 65
Query: 323 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 382
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 66 DGRENLLT--IMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 114
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 322
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 3 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 62
Query: 323 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 382
GR + D GE L + P++SS +TEV A S+ D L+S
Sbjct: 63 DGRENLLT--IMGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 111
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 280 LDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTYGGRTGFFNAVYLKAGD 338
LD + H YT KS I+ GD E + F+++G++ + GR YL +GD
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIG--YLNSGD 63
Query: 339 FCGE 342
F GE
Sbjct: 64 FFGE 67
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 322
++L R +F+ ++ + A+ L+PV + + EG+P + + ++ G + +
Sbjct: 28 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 87
Query: 323 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKS 382
GR D GE L + P++SS +TEV A S+ D L+S
Sbjct: 88 DGRENLLT--IXGPSDMFGE-LSIFDPGPRTSS--------ATTITEVRAVSMDRDALRS 136
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL-VSTTTY 322
D+L R P+F +DD+ + V + EGDP + + V G + + T+
Sbjct: 5 DVLRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSP 64
Query: 323 GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLK 381
GR V + GE L DP T T ALTEV+ +L DL+
Sbjct: 65 DGRENXLAVV--GPSELIGELSL---FDPGP------RTATGTALTEVKLLALGHGDLQ 112
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 316 LVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSL 375
LV+ T GG + FN G C L TW P+ N P ++ +Q L V++ L
Sbjct: 145 LVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWN-PQTSSFLQVLVSVQSLIL 203
Query: 376 MAD 378
+A+
Sbjct: 204 VAE 206
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 257 IKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNL 316
IK + L VP F+ + +++L + D L+ Y +I+R+G + + +G +
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Query: 317 VST 319
T
Sbjct: 210 NVT 212
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 258 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 317
KR + DLL +P+ + + + D L +Y I+REGD E + G V
Sbjct: 119 KRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYG-AV 177
Query: 318 STTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSS 354
+ G G N LK D+ GE L L Q++
Sbjct: 178 DVSKKG--QGVINK--LKDHDYFGEVALLNDLPRQAT 210
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 36/88 (40%)
Query: 258 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 317
KR + + L +V + E ++ + D L+PV + + IV +G+P ++ + G
Sbjct: 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTAS 301
Query: 318 STTTYGGRTGFFNAVYLKAGDFCGEALL 345
+ L D+ GE L
Sbjct: 302 VLQRRSPNEEYVEVGRLGPSDYFGEIAL 329
>pdb|4ATM|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1 At 1.8 Angstrom Resolution Featuring Increased
Order At The N-Terminus
Length = 243
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 63 ERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGIS 122
E+ D W D +KL D S T + Y G+F N + S + D ++
Sbjct: 101 EKCDVLWEDFHQKLVDESLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARH--------H 152
Query: 123 IDALQS 128
++ALQS
Sbjct: 153 LEALQS 158
>pdb|2E8M|A Chain A, Solution Structure Of The C-Terminal Sam-Domain Of
Epidermal Growth Receptor Pathway Substrate 8
Length = 99
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 338 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSK 393
D E + TW QS P++ ++ L + FSL D+L++V + R++S+
Sbjct: 33 DSTPEDVKTWL---QSKGFNPVTVNSLGVLNGAQLFSLNKDELRTVCPEGARVYSQ 85
>pdb|3SOG|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1
Length = 205
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 63 ERQDSCWRDVCRKLNDTSNCTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGIS 122
E+ D W D +KL D S T + Y G+F N + S + D ++
Sbjct: 69 EKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARH--------H 120
Query: 123 IDALQS 128
++ALQS
Sbjct: 121 LEALQS 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,818,709
Number of Sequences: 62578
Number of extensions: 539428
Number of successful extensions: 1908
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1868
Number of HSP's gapped (non-prelim): 43
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)