Query 010766
Match_columns 502
No_of_seqs 410 out of 3102
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2E-69 4.2E-74 570.6 38.9 444 2-501 197-640 (727)
2 PLN03192 Voltage-dependent pot 100.0 6.7E-52 1.5E-56 463.0 39.5 330 8-401 170-500 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 2E-51 4.4E-56 403.7 35.0 336 7-397 98-433 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.9E-48 4.1E-53 386.4 21.5 370 9-438 327-696 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 5.1E-45 1.1E-49 363.2 22.0 312 10-392 334-646 (815)
6 PRK09392 ftrB transcriptional 99.9 4.3E-21 9.4E-26 184.3 18.4 185 263-474 6-197 (236)
7 PRK11753 DNA-binding transcrip 99.9 3.5E-20 7.6E-25 174.8 18.6 178 273-476 6-194 (211)
8 PRK11161 fumarate/nitrate redu 99.8 1.1E-19 2.3E-24 174.5 16.6 182 266-475 15-209 (235)
9 PRK10402 DNA-binding transcrip 99.8 5E-18 1.1E-22 161.9 16.0 164 280-471 24-190 (226)
10 PRK09391 fixK transcriptional 99.8 4.9E-18 1.1E-22 162.3 14.4 165 281-475 32-204 (230)
11 COG0664 Crp cAMP-binding prote 99.7 5E-16 1.1E-20 145.9 17.7 183 268-477 4-198 (214)
12 PRK13918 CRP/FNR family transc 99.7 2.7E-16 5.9E-21 147.2 14.5 156 286-475 5-174 (202)
13 TIGR03697 NtcA_cyano global ni 99.7 3.2E-16 6.9E-21 145.6 14.5 155 295-474 1-167 (193)
14 cd00038 CAP_ED effector domain 99.5 4E-13 8.6E-18 112.5 13.2 111 271-392 1-112 (115)
15 PF00027 cNMP_binding: Cyclic 99.4 1.1E-12 2.3E-17 105.7 11.1 91 289-389 1-91 (91)
16 smart00100 cNMP Cyclic nucleot 99.4 6.3E-12 1.4E-16 105.8 14.7 113 271-392 1-114 (120)
17 COG2905 Predicted signal-trans 99.3 7E-11 1.5E-15 120.3 14.6 116 263-392 6-121 (610)
18 KOG0614 cGMP-dependent protein 99.2 2E-11 4.3E-16 122.6 8.5 125 260-393 268-393 (732)
19 PF07885 Ion_trans_2: Ion chan 99.2 6.7E-11 1.5E-15 93.0 9.9 55 139-193 24-78 (79)
20 KOG0614 cGMP-dependent protein 99.2 3.7E-11 8.1E-16 120.7 9.2 130 256-400 146-275 (732)
21 KOG1113 cAMP-dependent protein 99.2 3.8E-11 8.1E-16 115.7 8.5 123 262-399 120-242 (368)
22 PLN02868 acyl-CoA thioesterase 99.2 1.6E-10 3.5E-15 119.9 13.6 114 263-389 7-120 (413)
23 KOG3713 Voltage-gated K+ chann 99.2 1.1E-10 2.5E-15 117.5 9.8 68 137-204 375-442 (477)
24 PF00520 Ion_trans: Ion transp 98.8 7.2E-08 1.6E-12 89.1 11.5 54 135-188 141-200 (200)
25 KOG1113 cAMP-dependent protein 98.7 2E-08 4.3E-13 97.1 7.5 117 257-387 233-349 (368)
26 KOG1545 Voltage-gated shaker-l 98.7 6.9E-09 1.5E-13 99.9 2.2 51 138-188 392-442 (507)
27 KOG1419 Voltage-gated K+ chann 98.6 6.6E-07 1.4E-11 91.1 12.4 89 136-231 266-354 (654)
28 PRK10537 voltage-gated potassi 98.4 2.8E-06 6E-11 87.0 13.5 54 139-192 168-221 (393)
29 KOG3684 Ca2+-activated K+ chan 98.4 1E-05 2.3E-10 81.0 15.2 93 136-236 284-376 (489)
30 KOG1420 Ca2+-activated K+ chan 98.2 1.5E-06 3.2E-11 88.6 4.8 128 138-274 287-418 (1103)
31 KOG2968 Predicted esterase of 98.1 3.4E-06 7.3E-11 90.3 6.1 114 278-402 499-613 (1158)
32 KOG4390 Voltage-gated A-type K 98.1 5.6E-07 1.2E-11 87.7 -0.9 60 134-193 351-414 (632)
33 PF01007 IRK: Inward rectifier 98.0 4.5E-05 9.7E-10 76.3 10.8 58 138-195 83-142 (336)
34 KOG2968 Predicted esterase of 97.9 0.0001 2.3E-09 79.3 13.1 113 283-399 111-224 (1158)
35 PRK11832 putative DNA-binding 97.8 0.0014 3.1E-08 60.4 15.8 96 279-388 14-110 (207)
36 KOG1418 Tandem pore domain K+ 97.7 3.7E-05 8.1E-10 80.1 5.6 59 139-197 115-173 (433)
37 PF04831 Popeye: Popeye protei 97.7 0.0017 3.7E-08 56.2 14.1 108 275-392 15-124 (153)
38 KOG3827 Inward rectifier K+ ch 96.9 0.0035 7.7E-08 62.0 7.8 59 139-197 112-172 (400)
39 KOG4404 Tandem pore domain K+ 96.7 0.00037 8E-09 67.2 0.0 56 137-192 78-133 (350)
40 KOG4404 Tandem pore domain K+ 96.7 0.011 2.5E-07 57.2 9.5 60 139-198 186-253 (350)
41 KOG3542 cAMP-regulated guanine 95.8 0.023 4.9E-07 59.9 7.0 115 259-387 276-391 (1283)
42 KOG1418 Tandem pore domain K+ 95.3 0.0037 8.1E-08 65.0 -0.7 48 138-185 241-296 (433)
43 PLN03223 Polycystin cation cha 94.0 2.7 5.9E-05 48.7 17.3 22 7-28 1299-1320(1634)
44 KOG3193 K+ channel subunit [In 91.8 0.084 1.8E-06 54.5 1.6 32 139-170 217-248 (1087)
45 PF00325 Crp: Bacterial regula 87.9 0.19 4.2E-06 31.6 0.4 23 451-473 3-25 (32)
46 KOG3542 cAMP-regulated guanine 87.7 0.72 1.6E-05 49.1 4.6 93 263-378 36-128 (1283)
47 COG4709 Predicted membrane pro 82.9 7 0.00015 35.3 7.9 73 204-278 5-81 (195)
48 KOG3676 Ca2+-permeable cation 82.0 81 0.0018 35.1 16.9 75 152-227 601-682 (782)
49 PRK13290 ectC L-ectoine syntha 79.7 8.9 0.00019 32.7 7.3 69 288-375 38-106 (125)
50 PF08006 DUF1700: Protein of u 74.9 16 0.00035 33.2 8.1 57 203-261 4-64 (181)
51 PF07883 Cupin_2: Cupin domain 73.4 6.8 0.00015 29.0 4.5 44 290-340 3-47 (71)
52 PRK10371 DNA-binding transcrip 69.8 61 0.0013 32.0 11.6 40 435-476 194-233 (302)
53 TIGR03037 anthran_nbaC 3-hydro 69.2 14 0.00031 32.7 6.0 69 293-379 36-105 (159)
54 PF00060 Lig_chan: Ligand-gate 62.9 7.8 0.00017 33.4 3.3 75 136-216 41-115 (148)
55 PF05899 Cupin_3: Protein of u 62.7 17 0.00036 27.7 4.7 41 293-341 15-55 (74)
56 PF13314 DUF4083: Domain of un 62.6 35 0.00076 24.5 5.7 15 201-215 43-57 (58)
57 PF00520 Ion_trans: Ion transp 61.8 55 0.0012 29.1 8.9 25 38-62 96-120 (200)
58 PHA02909 hypothetical protein; 60.3 19 0.0004 25.5 4.0 27 36-62 35-61 (72)
59 PF08016 PKD_channel: Polycyst 56.6 99 0.0021 32.2 10.8 22 8-29 305-326 (425)
60 TIGR02297 HpaA 4-hydroxyphenyl 55.3 89 0.0019 30.3 9.7 42 435-478 189-230 (287)
61 COG0662 {ManC} Mannose-6-phosp 54.9 41 0.00088 28.5 6.3 48 286-340 37-85 (127)
62 PLN03192 Voltage-dependent pot 54.9 3.8E+02 0.0082 30.7 20.3 44 216-264 357-400 (823)
63 PF10011 DUF2254: Predicted me 54.1 70 0.0015 32.8 8.9 61 137-197 98-158 (371)
64 PRK13264 3-hydroxyanthranilate 53.9 26 0.00056 31.7 4.9 60 303-379 52-111 (177)
65 PRK10296 DNA-binding transcrip 50.7 2.4E+02 0.0051 27.2 14.7 28 451-478 189-216 (278)
66 COG1917 Uncharacterized conser 49.8 39 0.00084 28.6 5.4 51 287-344 45-96 (131)
67 PF00165 HTH_AraC: Bacterial r 49.5 7.6 0.00017 25.8 0.7 32 447-478 5-36 (42)
68 PF01418 HTH_6: Helix-turn-hel 48.6 10 0.00022 29.2 1.3 45 429-473 13-57 (77)
69 PF04011 LemA: LemA family; I 48.5 34 0.00073 31.2 5.1 42 427-468 131-172 (186)
70 PRK10572 DNA-binding transcrip 47.0 2.6E+02 0.0057 27.0 11.6 42 435-478 186-227 (290)
71 TIGR01321 TrpR trp operon repr 46.9 29 0.00063 27.9 3.7 25 449-473 54-78 (94)
72 PF14377 DUF4414: Domain of un 42.3 43 0.00092 27.6 4.2 44 217-260 52-105 (108)
73 PRK01381 Trp operon repressor; 40.5 40 0.00086 27.3 3.6 24 450-473 55-78 (99)
74 smart00835 Cupin_1 Cupin. This 40.4 83 0.0018 27.2 6.1 54 287-342 32-87 (146)
75 PF13384 HTH_23: Homeodomain-l 40.1 14 0.0003 25.4 0.9 26 450-475 17-42 (50)
76 TIGR01636 phage_rinA phage tra 38.8 1.8E+02 0.0038 24.9 7.7 98 377-475 6-125 (134)
77 KOG0501 K+-channel KCNQ [Inorg 38.1 5.6E+02 0.012 27.9 12.9 47 246-292 499-550 (971)
78 PF12802 MarR_2: MarR family; 37.8 39 0.00085 24.1 3.1 36 435-472 8-43 (62)
79 PF07697 7TMR-HDED: 7TM-HD ext 37.4 1.3E+02 0.0028 27.9 7.3 59 247-306 146-207 (222)
80 PF13545 HTH_Crp_2: Crp-like h 37.2 15 0.00033 27.7 0.7 26 447-472 25-50 (76)
81 TIGR01610 phage_O_Nterm phage 37.0 15 0.00033 29.4 0.8 27 445-471 42-68 (95)
82 COG4325 Predicted membrane pro 35.1 3E+02 0.0064 28.2 9.3 61 136-198 129-194 (464)
83 KOG4440 NMDA selective glutama 34.2 75 0.0016 34.3 5.4 57 137-193 611-667 (993)
84 KOG2302 T-type voltage-gated C 32.0 8.9E+02 0.019 28.4 15.0 23 8-30 1224-1246(1956)
85 PF01325 Fe_dep_repress: Iron 31.7 46 0.00099 24.2 2.5 39 434-472 6-44 (60)
86 PHA01083 hypothetical protein 31.4 22 0.00047 31.0 0.8 34 440-473 6-39 (149)
87 PRK09108 type III secretion sy 31.1 1.7E+02 0.0038 29.7 7.4 68 160-227 173-240 (353)
88 PF13744 HTH_37: Helix-turn-he 30.6 25 0.00055 27.1 1.0 24 449-472 30-53 (80)
89 PF02037 SAP: SAP domain; Int 29.8 97 0.0021 19.7 3.5 26 205-230 5-35 (35)
90 PRK13500 transcriptional activ 29.6 5.5E+02 0.012 25.2 12.3 42 435-478 209-250 (312)
91 PF11198 DUF2857: Protein of u 28.7 1.7E+02 0.0037 26.6 6.2 29 451-480 88-116 (180)
92 smart00342 HTH_ARAC helix_turn 28.7 93 0.002 23.1 4.0 29 450-478 50-79 (84)
93 PF12973 Cupin_7: ChrR Cupin-l 28.2 1.8E+02 0.0039 22.8 5.7 64 286-374 25-88 (91)
94 COG5559 Uncharacterized conser 27.9 61 0.0013 23.4 2.4 19 243-261 5-23 (65)
95 TIGR00870 trp transient-recept 27.9 9E+02 0.02 27.1 16.0 52 9-61 478-530 (743)
96 smart00550 Zalpha Z-DNA-bindin 27.7 69 0.0015 23.8 2.9 37 432-470 6-42 (68)
97 PRK04190 glucose-6-phosphate i 27.5 2.7E+02 0.0058 25.6 7.3 51 287-340 70-130 (191)
98 PRK11511 DNA-binding transcrip 27.3 40 0.00088 28.5 1.8 41 436-478 13-53 (127)
99 PF13412 HTH_24: Winged helix- 27.2 76 0.0016 21.4 2.9 36 433-472 4-39 (48)
100 cd00092 HTH_CRP helix_turn_hel 27.1 34 0.00073 24.8 1.2 24 449-472 24-47 (67)
101 PRK11171 hypothetical protein; 27.0 1.9E+02 0.004 28.1 6.6 50 286-342 185-235 (266)
102 PRK12721 secretion system appa 27.0 2.3E+02 0.0049 28.8 7.3 65 163-227 174-238 (349)
103 PF11699 CENP-C_C: Mif2/CENP-C 26.6 81 0.0017 24.8 3.2 29 305-340 33-61 (85)
104 TIGR02272 gentisate_1_2 gentis 26.5 2.1E+02 0.0046 28.8 7.0 74 290-384 255-328 (335)
105 PHA03029 hypothetical protein; 26.4 2.9E+02 0.0063 21.0 6.7 36 163-198 2-37 (92)
106 PF01381 HTH_3: Helix-turn-hel 26.3 34 0.00074 23.8 1.0 25 449-473 8-32 (55)
107 PRK09685 DNA-binding transcrip 24.0 6.6E+02 0.014 24.3 11.9 38 436-474 201-238 (302)
108 PF13443 HTH_26: Cro/C1-type H 23.6 48 0.001 23.8 1.4 23 451-473 11-33 (63)
109 TIGR03404 bicupin_oxalic bicup 23.4 2.1E+02 0.0046 29.3 6.5 52 287-341 69-121 (367)
110 PF11151 DUF2929: Protein of u 23.3 21 0.00045 25.8 -0.6 18 139-156 2-19 (57)
111 PRK11171 hypothetical protein; 23.2 2E+02 0.0043 27.9 6.0 47 288-341 64-112 (266)
112 PRK12468 flhB flagellar biosyn 23.0 2.9E+02 0.0064 28.5 7.4 62 166-227 184-245 (386)
113 PF08566 Pam17: Mitochondrial 23.0 5.6E+02 0.012 23.1 8.9 57 165-221 74-133 (173)
114 KOG3599 Ca2+-modulated nonsele 23.0 1.2E+03 0.025 26.8 14.8 23 8-30 562-584 (798)
115 KOG3609 Receptor-activated Ca2 21.7 8.8E+02 0.019 27.6 10.9 18 139-156 553-570 (822)
116 PRK05702 flhB flagellar biosyn 21.5 3.4E+02 0.0074 27.7 7.5 64 164-227 182-245 (359)
117 PRK13109 flhB flagellar biosyn 21.4 2.6E+02 0.0056 28.5 6.6 63 165-227 185-247 (358)
118 TIGR02531 yecD_yerC TrpR-relat 21.1 1.2E+02 0.0025 24.1 3.2 23 450-472 50-72 (88)
119 TIGR01404 FlhB_rel_III type II 21.1 3.5E+02 0.0075 27.4 7.4 64 165-228 175-238 (342)
120 PRK08156 type III secretion sy 21.0 3.5E+02 0.0077 27.6 7.4 63 165-227 171-233 (361)
121 PRK13503 transcriptional activ 20.8 61 0.0013 31.3 1.9 42 435-478 174-215 (278)
122 COG1704 LemA Uncharacterized c 20.7 2E+02 0.0044 26.2 4.9 38 429-466 133-170 (185)
123 COG3257 GlxB Uncharacterized p 20.7 3.2E+02 0.0069 25.7 6.2 57 300-377 78-136 (264)
124 PF14841 FliG_M: FliG middle d 20.7 1.7E+02 0.0037 22.5 4.0 40 242-289 29-68 (79)
125 TIGR00328 flhB flagellar biosy 20.7 3.6E+02 0.0078 27.3 7.4 63 165-227 176-238 (347)
126 PHA01757 hypothetical protein 20.6 4.1E+02 0.0088 20.5 6.4 44 163-207 4-47 (98)
127 PF01047 MarR: MarR family; I 20.5 81 0.0018 22.2 2.1 34 436-473 7-40 (59)
128 PF13404 HTH_AsnC-type: AsnC-t 20.3 1.3E+02 0.0028 20.0 2.8 32 434-469 5-36 (42)
129 KOG2301 Voltage-gated Ca2+ cha 20.3 4.7E+02 0.01 32.4 9.2 32 151-182 1062-1093(1592)
130 PRK10219 DNA-binding transcrip 20.1 84 0.0018 25.4 2.3 40 436-477 9-48 (107)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-69 Score=570.58 Aligned_cols=444 Identities=52% Similarity=0.843 Sum_probs=381.1
Q ss_pred chhhHHHHhHHHHHHHhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhHHhhhhhccccchHHHHHhhcCCCCC
Q 010766 2 LKTIIFCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSN 81 (502)
Q Consensus 2 ~~~~~~~~~l~rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~ 81 (502)
|..++++|||+||.|++++++++.+..++..+++|..++++|+++++++||+||+||+||+++.+.||.++
T Consensus 197 l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~--------- 267 (727)
T KOG0498|consen 197 LVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA--------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------
Confidence 56788999999999999999999999999999999998899999999999999999999999988887443
Q ss_pred CCcccccCCCCCCCccccccccCCCCCccccCCCCccccchhhhhhcccccCCChhHHHHHHHHHHHHhhcccCCCcccc
Q 010766 82 CTTNLYCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTS 161 (502)
Q Consensus 82 c~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p 161 (502)
+|+...+...+++ +..|.||+|. ++.+|++|+||+++||||+||||++|
T Consensus 268 ---------------tw~~~l~~~~~~~----~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s 316 (727)
T KOG0498|consen 268 ---------------TWLGSLGRLLSCY----NLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHA 316 (727)
T ss_pred ---------------ccccccccccccC----cccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCC
Confidence 4555432111111 1236687765 45599999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCC
Q 010766 162 TFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVE 241 (502)
Q Consensus 162 ~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~ 241 (502)
+|..|++|+|++|++|.++||++||+|+++++..+++..+|+.++.++++||+++++|+.||+||++|++|.|..++|+|
T Consensus 317 ~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvd 396 (727)
T KOG0498|consen 317 NNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVD 396 (727)
T ss_pred CCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe
Q 010766 242 EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 321 (502)
Q Consensus 242 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~ 321 (502)
|+++|+.||++||++|+.+++.++++++|+|+++|++++.+|+.++++..|+|||+|+++||+.++||||.+|.+++...
T Consensus 397 ee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~ 476 (727)
T KOG0498|consen 397 EEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITT 476 (727)
T ss_pred HHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhh
Q 010766 322 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRF 401 (502)
Q Consensus 322 ~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~ 401 (502)
++|.+. +...+++||+|||.-+.|..+. |++++|+|+|.|+++.|++++|..++++||.++.++++++.++
T Consensus 477 ~~g~~~--~~~~L~~Gd~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~ 547 (727)
T KOG0498|consen 477 DGGGFF--VVAILGPGDFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRY 547 (727)
T ss_pred cCCceE--EEEEecCCCccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 776443 5699999999995555565532 1388999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCCCCCC
Q 010766 402 HSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGTRLP 481 (502)
Q Consensus 402 ~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~~~~~ 481 (502)
++.+|+.+..+.+|..|+++.++.....+...+. ....-...++..+.+.....|+....++....+.. .+.++.
T Consensus 548 ~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 622 (727)
T KOG0498|consen 548 YSHLWRTWAACFIQAAWRRHIKRKGEEELALEEE-ESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTA----ASRGSS 622 (727)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcc-hhhhccccccchhhhhcccccccccccCCCccccc----cccCcc
Confidence 9999999999999999999988775544433211 11111144556666777777777766665555322 344444
Q ss_pred ccCCCCCCCCCCCCCCCCCC
Q 010766 482 QRLLPPLIPQKPAEPDFTAK 501 (502)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~ 501 (502)
.+. +..+|+|.+|+|..+
T Consensus 623 ~~~--~~~~~~~~~p~f~~~ 640 (727)
T KOG0498|consen 623 DCA--LLLLQKPADPDFSDA 640 (727)
T ss_pred ccc--cccCCCCCCCCcccc
Confidence 454 667899999999864
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=6.7e-52 Score=462.96 Aligned_cols=330 Identities=19% Similarity=0.283 Sum_probs=283.3
Q ss_pred HHhHHHHHHHhhhhhhhhhccccch-hhhHHHHHHHHHHHHHHHHHHhhHHhhhhhccccchHHHHHhhcCCCCCCCccc
Q 010766 8 CQYVPRIARIYPLYNDVKRTSGILT-ETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNL 86 (502)
Q Consensus 8 ~~~l~rllr~~rl~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~c~~~~ 86 (502)
+.+++|++|+.|+.+.+.+....+. ...|+..+++++++++++||+||+||++|...
T Consensus 170 ~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~---------------------- 227 (823)
T PLN03192 170 LLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRY---------------------- 227 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------
Confidence 3445566666665555554332221 12355666777777778999999999999210
Q ss_pred ccCCCCCCCccccccccCCCCCccccCCCCccccchhhhhhcccccCCChhHHHHHHHHHHHHhhcccCCCccccCChhh
Q 010766 87 YCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGE 166 (502)
Q Consensus 87 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E 166 (502)
...+.+|+..... .+.+.+++.+|+.|+|||++|||||||||++|.|..|
T Consensus 228 -----~~~~~~Wi~~~~~-------------------------~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E 277 (823)
T PLN03192 228 -----PHQGKTWIGAVIP-------------------------NFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIE 277 (823)
T ss_pred -----CCCCCchHHHhhh-------------------------ccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccch
Confidence 0124578754211 0256789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHH
Q 010766 167 VFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLL 246 (502)
Q Consensus 167 ~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il 246 (502)
++|++++|++|+++|||++|++++++.+.+++..+|+++++.+++||+++++|+.+|.||++|+++.|+. +..++++++
T Consensus 278 ~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l 356 (823)
T PLN03192 278 MIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLI 356 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 457889999
Q ss_pred hcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCcee
Q 010766 247 RNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRT 326 (502)
Q Consensus 247 ~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e 326 (502)
+.||++||.++..+++.+.++++++|++++++++.+++..++.+.|+|||.|+.+||.++++|||.+|.|+++..+++++
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e 436 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKE 436 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997666666
Q ss_pred eeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhh
Q 010766 327 GFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRF 401 (502)
Q Consensus 327 ~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~ 401 (502)
.+ +..+++|++|||.+++ ...| ++++++|.++|+++.|++++|.++++.+|+....+++...+.
T Consensus 437 ~~--l~~l~~Gd~FGE~~~l---~~~p------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~ 500 (823)
T PLN03192 437 RV--VGTLGCGDIFGEVGAL---CCRP------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQH 500 (823)
T ss_pred ee--eEEccCCCEecchHHh---cCCC------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54 5899999999999984 3333 489999999999999999999999999999988888777664
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-51 Score=403.69 Aligned_cols=336 Identities=23% Similarity=0.395 Sum_probs=283.1
Q ss_pred HHHhHHHHHHHhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhHHhhhhhccccchHHHHHhhcCCCCCCCccc
Q 010766 7 FCQYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNL 86 (502)
Q Consensus 7 ~~~~l~rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~c~~~~ 86 (502)
.+.++.||+|++|+..-+++....-.-........+...+++++||.||+||+|+...
T Consensus 98 ~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~---------------------- 155 (536)
T KOG0500|consen 98 SLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAI---------------------- 155 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhc----------------------
Confidence 4556888888888887777654422111112223344566667999999999999311
Q ss_pred ccCCCCCCCccccccccCCCCCccccCCCCccccchhhhhhcccccCCChhHHHHHHHHHHHHhhcccCCCccccCChhh
Q 010766 87 YCGEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGE 166 (502)
Q Consensus 87 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E 166 (502)
+.+..+|..+. ..+|...+ . ..+++..+|+.|+||++.|+||+| --..|.++.|
T Consensus 156 -----g~~~d~wvY~~--i~d~~~~~------------c------~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~e 209 (536)
T KOG0500|consen 156 -----GFTTDDWVYPK--INDPEFAT------------C------DAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSE 209 (536)
T ss_pred -----CccccccccCC--ccCccccc------------c------chhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCch
Confidence 12344586542 11111100 0 124478999999999999999999 4788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHH
Q 010766 167 VFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLL 246 (502)
Q Consensus 167 ~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il 246 (502)
.+|.|+=.++|+++||-|+|++++++++++....+|+.+|+.+++||+.+++|+.+|.||.+||.|.|.+++..||++++
T Consensus 210 y~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl 289 (536)
T KOG0500|consen 210 YAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVL 289 (536)
T ss_pred hhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCcee
Q 010766 247 RNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRT 326 (502)
Q Consensus 247 ~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e 326 (502)
+.||+.|+.+|+.+++.+.++++++|+++.+.++.+++.+++++.|.|||+|+++||.+++||+|.+|.+.+..+++++.
T Consensus 290 ~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~ 369 (536)
T KOG0500|consen 290 KLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV 369 (536)
T ss_pred HhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877664
Q ss_pred eeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHH
Q 010766 327 GFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 397 (502)
Q Consensus 327 ~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~ 397 (502)
...+++|++|||++.+ +.+++..+|+ |++++++++.+.+++++++|+-+.+++||+.+..+.++
T Consensus 370 ----~~~L~~G~~FGEisIl-ni~g~~~gNR--RtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 370 ----FVTLKAGSVFGEISIL-NIKGNKNGNR--RTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred ----EEEecCCceeeeeEEE-EEcCcccCCc--ceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 5899999999999986 4666544444 69999999999999999999999999999977655533
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=386.39 Aligned_cols=370 Identities=19% Similarity=0.273 Sum_probs=309.2
Q ss_pred HhHHHHHHHhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhHHhhhhhccccchHHHHHhhcCCCCCCCccccc
Q 010766 9 QYVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYSIERQDSCWRDVCRKLNDTSNCTTNLYC 88 (502)
Q Consensus 9 ~~l~rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 88 (502)
.-+.||||+.|+.|+++.+.++- .+.+++++++|++++||+||+||.||-.+.- ++
T Consensus 327 LKVVRLLRLGRVaRKLD~YlEYG----AA~LvLLlC~y~lvAHWlACiWysIGd~ev~----~~---------------- 382 (971)
T KOG0501|consen 327 LKVVRLLRLGRVARKLDHYLEYG----AAVLVLLLCVYGLVAHWLACIWYSIGDYEVR----DE---------------- 382 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHhheeccchhee----cc----------------
Confidence 34789999999999999887652 2445667788999999999999999932111 00
Q ss_pred CCCCCCCccccccccCCCCCccccCCCCccccchhhhhhcccccCCChhHHHHHHHHHHHHhhcccCCCccccCChhhHH
Q 010766 89 GEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVF 168 (502)
Q Consensus 89 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~ 168 (502)
..+.-..++|+.+... +-.++|+|- ..-....+..++.-+.|+.|+||..+.|||||+|+|.|.|+.|++
T Consensus 383 ~~n~i~~dsWL~kLa~-------~~~tpY~~~---~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKi 452 (971)
T KOG0501|consen 383 MDNTIQPDSWLWKLAN-------DIGTPYNYN---LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKI 452 (971)
T ss_pred cccccccchHHHHHHh-------hcCCCceec---cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHH
Confidence 0112234577766533 223344442 111122236677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhc
Q 010766 169 FAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRN 248 (502)
Q Consensus 169 ~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~ 248 (502)
|++++|++|+++||-|+|+++.|++++.+....|++.++.+.+||+-..+|+.|.+||.+|.--.|...+|+|.+++|+-
T Consensus 453 F~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~ 532 (971)
T KOG0501|consen 453 FGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGY 532 (971)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeee
Q 010766 249 LPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGF 328 (502)
Q Consensus 249 Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~ 328 (502)
.|.++|.+|+.++..+.++..|.|+-.|+.+++.|+..++..+.+|||.|++.||..+.++||++|.+++..+++
T Consensus 533 CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE----- 607 (971)
T KOG0501|consen 533 CPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE----- 607 (971)
T ss_pred CccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred eEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhh
Q 010766 329 FNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRT 408 (502)
Q Consensus 329 ~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~ 408 (502)
+++++++||+||+.-. -+. ....+.++++|+|.|.+..|.++.+.++++-|..+++.+.++..
T Consensus 608 -VVAILGKGDVFGD~FW---K~~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~--------- 670 (971)
T KOG0501|consen 608 -VVAILGKGDVFGDEFW---KEN----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT--------- 670 (971)
T ss_pred -EEEEeecCccchhHHh---hhh----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee---------
Confidence 5799999999999754 111 12235889999999999999999999999999988875444432
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010766 409 WAACFIQAAWRRHSKKKLAQSLQEAEDRLQ 438 (502)
Q Consensus 409 ~~~~~~q~~~~~~~~r~~~~~~~~a~ery~ 438 (502)
+.-++-+|...|+++...++.|+|.+
T Consensus 671 ----LTyNLr~RiiFRKvaDVKrEkE~~~k 696 (971)
T KOG0501|consen 671 ----LTYNLRHRIIFRKVADVKREKELRAK 696 (971)
T ss_pred ----eEeeccceeeeeehhhhhhhHHHHHh
Confidence 23345566777888888888887754
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-45 Score=363.16 Aligned_cols=312 Identities=22% Similarity=0.394 Sum_probs=272.2
Q ss_pred hHHHHHHHhhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhHHhhhh-hccccchHHHHHhhcCCCCCCCccccc
Q 010766 10 YVPRIARIYPLYNDVKRTSGILTETAWAGAALNLFLYMLASHIFGACWYLYS-IERQDSCWRDVCRKLNDTSNCTTNLYC 88 (502)
Q Consensus 10 ~l~rllr~~rl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~aC~w~~i~-~~~~~~~~~~~~~~~~~~~~c~~~~~~ 88 (502)
|++|.|++..+.-.......++...-.+..++++-+++++.|+.||+||..+ .+.
T Consensus 334 R~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayqg------------------------ 389 (815)
T KOG0499|consen 334 RANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQG------------------------ 389 (815)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcc------------------------
Confidence 5566666555433333333333333345566778778888999999999888 321
Q ss_pred CCCCCCCccccccccCCCCCccccCCCCccccchhhhhhcccccCCChhHHHHHHHHHHHHhhcccCCCccccCChhhHH
Q 010766 89 GEFHGSNNTLLHGSCPFISPDEIKNSSMFNFGISIDALQSRVVEEHDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVF 168 (502)
Q Consensus 89 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~ 168 (502)
-+.+.|+.+. -...|++|+|||+.|++|+| |...|+|..|++
T Consensus 390 ----lG~~rWVydg---------------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~V 431 (815)
T KOG0499|consen 390 ----LGTTRWVYDG---------------------------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIV 431 (815)
T ss_pred ----cccceeEEcC---------------------------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHH
Confidence 1357787542 22369999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhc
Q 010766 169 FAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRN 248 (502)
Q Consensus 169 ~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~ 248 (502)
|..+.-+.|+++|+.+||.|-.++...+.+++.|+..|+..-.||++.++|++.|+||+.||+|.|+.++..||++++..
T Consensus 432 f~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~ 511 (815)
T KOG0499|consen 432 FQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKT 511 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeee
Q 010766 249 LPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGF 328 (502)
Q Consensus 249 Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~ 328 (502)
||..||.+++..++-..+.++.+|++++.+.+..++.+++.+.|-|||+|+++||++++||+|..|.|++....+|+.
T Consensus 512 LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~-- 589 (815)
T KOG0499|consen 512 LPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK-- 589 (815)
T ss_pred cchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997777765
Q ss_pred eEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 329 FNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 329 ~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
++..+.+|++|||++++ ...+..| |+++++|.+.|.+++++++|+.+++..||+-..
T Consensus 590 -Vl~tL~~GsVFGEISLL-aigG~nR-----RTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~ 646 (815)
T KOG0499|consen 590 -VLVTLKAGSVFGEISLL-AIGGGNR-----RTANVVAHGFANLFVLDKKDLNEILVHYPDSQR 646 (815)
T ss_pred -EEEEecccceeeeeeee-eecCCCc-----cchhhhhcccceeeEecHhHHHHHHHhCccHHH
Confidence 56999999999999986 3333322 699999999999999999999999999997554
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.87 E-value=4.3e-21 Score=184.27 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=152.3
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
.+.++.+++|..++++.++.+....+.+.|++|+.|+++|+.++++|+|.+|.|+++...+|++.+ +.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457889999999999999999999999999999999999999999999999999999766666654 599999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 010766 343 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHS 422 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~ 422 (502)
.+++ .+.+ +.++++|.++|+++.|++++|.+++.++|.+...+++.... ......
T Consensus 84 ~~~~---~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~----------------~~~~~~ 138 (236)
T PRK09392 84 AAVV---LDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG----------------CYRGLV 138 (236)
T ss_pred HHHh---CCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHH
Confidence 9873 3333 48899999999999999999999999999988755444332 233455
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc-----cccccccch--hhhHhHHhhhhhchhhhhccC
Q 010766 423 KKKLAQSLQEAEDRLQDALATE-----AGALTSLGA--TMYASKFAANLLHPLRLRQNG 474 (502)
Q Consensus 423 ~r~~~~~~~~a~ery~~ll~~~-----p~~~~~ip~--~~iASylGi~~~~lsrir~~~ 474 (502)
++.......++++|+..++... ++....+|+ ++||++||++++++||+.++.
T Consensus 139 ~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tretvsR~l~~L 197 (236)
T PRK09392 139 KSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPENLSRAFAAL 197 (236)
T ss_pred HHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCChhHHHHHHHHH
Confidence 5556667788999999987532 233455674 779999999999999986543
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.85 E-value=3.5e-20 Score=174.77 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=142.1
Q ss_pred cCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhhhcCC
Q 010766 273 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDP 351 (502)
Q Consensus 273 ~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~ 351 (502)
+++|++.++.+...++.+.|++|++|+.+|++++++|||.+|.++++.. .+|++.+ +.++++|++||+..++ ...
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--~~~ 81 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF--EEG 81 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc--cCC
Confidence 5789999999999999999999999999999999999999999999964 4567654 5999999999999874 222
Q ss_pred CCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 010766 352 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQ 431 (502)
Q Consensus 352 ~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~ 431 (502)
. ++.++++|.++|+++.|++++|.++++++|++...+++... +. .....++.......
T Consensus 82 ~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~---------------~~-l~~~~~~~~~~~~~ 139 (211)
T PRK11753 82 Q------ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMA---------------RR-LQNTSRKVGDLAFL 139 (211)
T ss_pred C------CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHH---------------HH-HHHHHHHHHHHHhc
Confidence 2 24789999999999999999999999999998764433322 22 22344455667788
Q ss_pred HHHHHHHHHHhh---c------cc-cccccchhhhHhHHhhhhhchhhhhccCCC
Q 010766 432 EAEDRLQDALAT---E------AG-ALTSLGATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 432 ~a~ery~~ll~~---~------p~-~~~~ip~~~iASylGi~~~~lsrir~~~~~ 476 (502)
++.+|+..++.. . |+ +..+++++.||+++|++++++||+.++..+
T Consensus 140 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~~ 194 (211)
T PRK11753 140 DVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKMLED 194 (211)
T ss_pred ChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 889998875432 2 22 345789999999999999999999775443
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.83 E-value=1.1e-19 Score=174.47 Aligned_cols=182 Identities=14% Similarity=0.146 Sum_probs=142.3
Q ss_pred hccCcCccCCCHHHHHHHHhccce-eeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechh
Q 010766 266 LMRVPMFEKMDDQLLDAMCDHLKP-VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEA 343 (502)
Q Consensus 266 l~~~~~F~~ls~~~l~~l~~~~~~-~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~ 343 (502)
+.+...|..+++++++.+...... +.|+||+.|+.+||+++++|+|.+|.|+++.. .+|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 344444556999999999998864 68999999999999999999999999999964 5577754 4888999999986
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 010766 344 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSK 423 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 423 (502)
.+ .... ++.+++|+++|+++.|++++|.+++.++|++...+++.... ......+
T Consensus 93 ~~---~~~~-------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~----------------~~~~~~~ 146 (235)
T PRK11161 93 AI---GSGQ-------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG----------------EIKGDQE 146 (235)
T ss_pred cc---cCCC-------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHH
Confidence 54 2222 25689999999999999999999999999988755444332 2223444
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc-----------cccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 424 KKLAQSLQEAEDRLQDALATEAG-----------ALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 424 r~~~~~~~~a~ery~~ll~~~p~-----------~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
+.......++++|+..++...++ +...+++.+||++||++++++||+.++..
T Consensus 147 ~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~ 209 (235)
T PRK11161 147 MILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQ 209 (235)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44555677889999888776442 23568899999999999999999976543
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.78 E-value=5e-18 Score=161.86 Aligned_cols=164 Identities=18% Similarity=0.160 Sum_probs=127.3
Q ss_pred HHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCC
Q 010766 280 LDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRP 358 (502)
Q Consensus 280 l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~ 358 (502)
...+....+.+.|++|++|+.+|++++++|||.+|.|+++. ..+|++.+ +.++.+|++||+.+++ .+.+
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~~~----- 93 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DKDH----- 93 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cCCC-----
Confidence 34577888999999999999999999999999999999996 45677754 5899999999999863 3332
Q ss_pred CcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010766 359 LSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQ 438 (502)
Q Consensus 359 ~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~ 438 (502)
++++++|+++|+++.+++++|.+++.++|.+...+++..... ..+...+.......++++|+.
T Consensus 94 -~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~----------------~~~~~~~~~~~~~~~~~~Rla 156 (226)
T PRK10402 94 -ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHK----------------NYRNIVSLTQNQSFPLENRLA 156 (226)
T ss_pred -CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHH----------------HHHHHHHHHHhccChHHHHHH
Confidence 488999999999999999999999999998877544443321 112222233333457899999
Q ss_pred HHHhhc--cccccccchhhhHhHHhhhhhchhhhh
Q 010766 439 DALATE--AGALTSLGATMYASKFAANLLHPLRLR 471 (502)
Q Consensus 439 ~ll~~~--p~~~~~ip~~~iASylGi~~~~lsrir 471 (502)
.++... ++. ...++..||++||++++++||+=
T Consensus 157 ~~L~~~~~~~~-~~~t~~~lA~~lG~sretvsR~L 190 (226)
T PRK10402 157 AFILLTQEGDL-YHEKHTQAAEYLGVSYRHLLYVL 190 (226)
T ss_pred HHHHhcccCCc-ccchHHHHHHHHCCcHHHHHHHH
Confidence 987642 222 23578999999999999999973
No 10
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.77 E-value=4.9e-18 Score=162.29 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=130.1
Q ss_pred HHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCC
Q 010766 281 DAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPL 359 (502)
Q Consensus 281 ~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~ 359 (502)
..+....+.+.|++|++|+.+||+++++|||.+|.|+++. ..+|++.+ +.++.+|++||+.. .. +
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------~~------~ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------GS------T 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------CC------c
Confidence 3456678899999999999999999999999999999996 45677654 58899999999542 11 1
Q ss_pred cccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010766 360 STRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQD 439 (502)
Q Consensus 360 ~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ 439 (502)
+.++++|+++|+++.|+.++|.+++..+|++...+++.... ......++...+...++++|+..
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~----------------~l~~~~~~~~~l~~~~~~~Rla~ 161 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG----------------GLRHAQDHMLLLGRKTAMERVAA 161 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCHHHHHHH
Confidence 37899999999999999999999999999988755554433 22234455556667789999988
Q ss_pred HHhhc-------cccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 440 ALATE-------AGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 440 ll~~~-------p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
++.+. +.+...+++..||++||++++++||+.++..
T Consensus 162 ~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~ 204 (230)
T PRK09391 162 FLLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQ 204 (230)
T ss_pred HHHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77653 2234567889999999999999999866543
No 11
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.70 E-value=5e-16 Score=145.95 Aligned_cols=183 Identities=18% Similarity=0.229 Sum_probs=142.7
Q ss_pred cCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhh
Q 010766 268 RVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLT 346 (502)
Q Consensus 268 ~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~ 346 (502)
..+.|...+++....+......+.+++|+.|+.+|++++.+|+|.+|.++++.. .+|++.+ +.++++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELALL 81 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHHh
Confidence 445666677777777778999999999999999999999999999999999964 4566654 4899999999999985
Q ss_pred hhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHH
Q 010766 347 WALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKL 426 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~ 426 (502)
...+ ++++++|+++|+++.+++++|.+++.+.|.+...+++...+. .+.......
T Consensus 82 ---~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~----------------l~~~~~~~~ 136 (214)
T COG0664 82 ---GGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARR----------------LRQALERLS 136 (214)
T ss_pred ---cCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 2223 489999999999999999999998877888877555444332 223334444
Q ss_pred HHHHHHHHHHHHHHHhhccc-----------cccccchhhhHhHHhhhhhchhhhhccCCCC
Q 010766 427 AQSLQEAEDRLQDALATEAG-----------ALTSLGATMYASKFAANLLHPLRLRQNGSSG 477 (502)
Q Consensus 427 ~~~~~~a~ery~~ll~~~p~-----------~~~~ip~~~iASylGi~~~~lsrir~~~~~~ 477 (502)
....+.+++|+...+..-.. +...++...+|+++|.+.+++||+.++..+.
T Consensus 137 ~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~vsr~l~~l~~~ 198 (214)
T COG0664 137 LLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAEYLGLSRETVSRILKELRKD 198 (214)
T ss_pred HHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHHHhCCchhhHHHHHHHHHhC
Confidence 44677778888776555332 2467999999999999999999996655443
No 12
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.70 E-value=2.7e-16 Score=147.21 Aligned_cols=156 Identities=17% Similarity=0.116 Sum_probs=114.2
Q ss_pred ccceeeeCCCCEEEecCC--CcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCccc
Q 010766 286 HLKPVLYTEKSFIVREGD--PVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTR 362 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge--~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~ 362 (502)
.++.+.|++|++|+.+|| +++.+|+|.+|.|+++. ..+|++.+ +..+.+|++||+..+ .. .+ +++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~---~~-~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEAL---AG-AE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHh---cC-CC------CCc
Confidence 467889999999999999 77999999999999996 45677765 599999999999754 22 22 378
Q ss_pred EEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 010766 363 TVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALA 442 (502)
Q Consensus 363 ~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ll~ 442 (502)
+++|+++|+++.|+.++| +|++...+++...+.... ..++.......++++|+..++-
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~----------------~~~~~~~l~~~~~~~Rla~~Ll 130 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLAR----------------AYESIYRLVGQRLKNRIAAALL 130 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHH----------------HHHHHHHHHhCchHHHHHHHHH
Confidence 899999999999999987 455555444443322111 1222233344556666666541
Q ss_pred -----------hccccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 443 -----------TEAGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 443 -----------~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
..+.+...+++.+||+++|++++++||+.++..
T Consensus 131 ~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~ 174 (202)
T PRK13918 131 ELSDTPLATQEDSGETMIYATHDELAAAVGSVRETVTKVIGELS 174 (202)
T ss_pred HHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHHHHHHHHHHHH
Confidence 234556778999999999999999999866543
No 13
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.69 E-value=3.2e-16 Score=145.56 Aligned_cols=155 Identities=17% Similarity=0.104 Sum_probs=118.5
Q ss_pred CCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEE
Q 010766 295 KSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAF 373 (502)
Q Consensus 295 ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~ 373 (502)
|+.|+.+|++++++|+|.+|.|+++. ..+|++.+ +..+++|++||+.+++ .+.+ .++.++++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 78999999999999999999999996 45677754 5999999999998874 2221 1135789999999999
Q ss_pred EecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh----c----c
Q 010766 374 SLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALAT----E----A 445 (502)
Q Consensus 374 ~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ll~~----~----p 445 (502)
.+++++|++++.++|.+...+++.+.. ......++.......++++|+..++.. + +
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~----------------~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~ 135 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS----------------RILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQ 135 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999988755554332 122234444455667788888777532 1 1
Q ss_pred ---ccccccchhhhHhHHhhhhhchhhhhccC
Q 010766 446 ---GALTSLGATMYASKFAANLLHPLRLRQNG 474 (502)
Q Consensus 446 ---~~~~~ip~~~iASylGi~~~~lsrir~~~ 474 (502)
.+...+++..||+++|++++++||+-++.
T Consensus 136 ~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l 167 (193)
T TIGR03697 136 RGVTIDLRLSHQAIAEAIGSTRVTITRLLGDL 167 (193)
T ss_pred CeEEecCCCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 23467899999999999999999985543
No 14
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.50 E-value=4e-13 Score=112.50 Aligned_cols=111 Identities=27% Similarity=0.498 Sum_probs=97.4
Q ss_pred CccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEec-CceeeeeEeEEeCCCCeechhhhhhhc
Q 010766 271 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCGEALLTWAL 349 (502)
Q Consensus 271 ~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~-~~~e~~~~i~~l~~G~~fGe~~~~~~~ 349 (502)
+|..++++.+..+...++.+.+++|+.|+.+|++.+++|+|.+|.++++..+ +|++.. +..+.+|++||...++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4778999999999999999999999999999999999999999999998643 455543 5899999999999874
Q ss_pred CCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 350 DPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 350 ~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
...+ +..+++|.++|+++.|+.++|.++++++|.+..
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 2222 488999999999999999999999999998765
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.44 E-value=1.1e-12 Score=105.71 Aligned_cols=91 Identities=24% Similarity=0.350 Sum_probs=77.6
Q ss_pred eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 010766 289 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 368 (502)
Q Consensus 289 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~ 368 (502)
.+.|++|++|+++|++++++|||.+|.++++..+.+.... .+..+.+|++||+.+++. ..+ +.++++|.+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~---~~~------~~~~~~a~~ 70 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLT---GKP------SPFTVIALT 70 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHH---TSB------BSSEEEESS
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecC---CCc------cEEEEEEcc
Confidence 3689999999999999999999999999999755433322 359999999999999852 222 488999999
Q ss_pred ceeEEEecHHHHHHHHHHhHH
Q 010766 369 EVEAFSLMADDLKSVASQFRR 389 (502)
Q Consensus 369 ~~~l~~i~~~~f~~ll~~~P~ 389 (502)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999995
No 16
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.41 E-value=6.3e-12 Score=105.76 Aligned_cols=113 Identities=24% Similarity=0.364 Sum_probs=97.1
Q ss_pred CccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhhhc
Q 010766 271 MFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWAL 349 (502)
Q Consensus 271 ~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~~ 349 (502)
+|.+++++.++.+...++.+.+++|++|+++|++++++|||.+|.++++.. .+|++. .+..+.+|++||+..++ ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~~-~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQ--ILGILGPGDFFGELALL-TN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceE--EEEeecCCceechhhhc-cC
Confidence 478899999999999999999999999999999999999999999999965 345554 35999999999999874 11
Q ss_pred CCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 350 DPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 350 ~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
.+. ++..+++|.++|.++.++.+++...+..+|.+..
T Consensus 78 ~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 114 (120)
T smart00100 78 SRR------AASATAVALELATLLRIDFRDFLQLLQENPQLLL 114 (120)
T ss_pred CCc------ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHH
Confidence 222 2478999999999999999999999999987654
No 17
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.27 E-value=7e-11 Score=120.33 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=103.8
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
.+++.++|.|..++++.+..|...+....|.+||+|+..|.+..++|+|.+|.|+++..++. .+..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 57889999999999999999999999999999999999999999999999999999876543 4699999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 343 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
.+++ +..+ ....+.|.+|+.+|.|+++.|.+++.++|.+++
T Consensus 81 ~~l~---~~~~------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSLF---TELN------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhhc---ccCC------CcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 9985 2221 155788889999999999999999999999988
No 18
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.23 E-value=2e-11 Score=122.65 Aligned_cols=125 Identities=24% Similarity=0.414 Sum_probs=108.1
Q ss_pred HHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCe
Q 010766 260 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 339 (502)
Q Consensus 260 ~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~ 339 (502)
+.+.++|+++++|++++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.++-..+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34678899999999999999999999999999999999999999999999999999999976655332224699999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEccc-eeEEEecHHHHHHHHHHhHHHHHH
Q 010766 340 CGEALLTWALDPQSSSNRPLSTRTVQALTE-VEAFSLMADDLKSVASQFRRLHSK 393 (502)
Q Consensus 340 fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~-~~l~~i~~~~f~~ll~~~P~~~~~ 393 (502)
|||-+++ .+.. |++++.|..+ ++++.|+++.|.+++-...++..+
T Consensus 348 FGE~al~--~edv-------RtAniia~~~gv~cl~lDresF~~liG~l~~l~ek 393 (732)
T KOG0614|consen 348 FGERALL--GEDV-------RTANIIAQAPGVECLTLDRESFKKLIGDLEELKEK 393 (732)
T ss_pred hhHHHhh--ccCc-------cchhhhccCCCceEEEecHHHHHHhcccHHHhhhh
Confidence 9999985 3332 5999999988 999999999999998887776643
No 19
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.23 E-value=6.7e-11 Score=93.02 Aligned_cols=55 Identities=18% Similarity=0.396 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 193 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~ 193 (502)
.|..|+||+++|+||+||||+.|.+...++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999999999999999999999999999999999999998875
No 20
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.21 E-value=3.7e-11 Score=120.70 Aligned_cols=130 Identities=22% Similarity=0.363 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeC
Q 010766 256 DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLK 335 (502)
Q Consensus 256 ~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~ 335 (502)
.-..++..+.+....++++++.+.+++++.+|.+..|.+|++|+++||+++++|.+.+|.+.+... |+ .+..++
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~----ll~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GK----LLGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Ce----eeeccC
Confidence 344566677888889999999999999999999999999999999999999999999999999863 33 479999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHh
Q 010766 336 AGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 400 (502)
Q Consensus 336 ~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~ 400 (502)
+|..|||.+.++++. |+++++|+++|.+|.|+++.|+.++...-..+..-..+.++
T Consensus 220 ~gtvFGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLr 275 (732)
T KOG0614|consen 220 AGTVFGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLR 275 (732)
T ss_pred CchhhhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986553 58999999999999999999999998766555444444443
No 21
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=3.8e-11 Score=115.71 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=105.3
Q ss_pred HHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 262 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 262 ~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
..+.+++.-+|++++++...++...|.++.++.|+.|+++|+.++.+|+|.+|.+.++..+. -+..+.+|..||
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~------~v~~~~~g~sFG 193 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT------YVTTYSPGGSFG 193 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe------EEeeeCCCCchh
Confidence 35677888899999999999999999999999999999999999999999999999998522 368999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 399 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~ 399 (502)
|+++++ .. ||.+|+.|.+++.+|.|++..|..++-.+-.-.++++...+
T Consensus 194 ElALmy---n~------PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l 242 (368)
T KOG1113|consen 194 ELALMY---NP------PRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFL 242 (368)
T ss_pred hhHhhh---CC------CcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhh
Confidence 999953 22 35999999999999999999999987766655554444433
No 22
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.20 E-value=1.6e-10 Score=119.91 Aligned_cols=114 Identities=19% Similarity=0.357 Sum_probs=97.4
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
...++++++|++++++.++.+...++.+.|++||+|+++|+.++.+|+|.+|.|+++..+.+.+. ++..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~--~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR--PEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE--EEEEeCCCCEeeh
Confidence 45678999999999999999999999999999999999999999999999999999975433243 4688999999997
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHH
Q 010766 343 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRR 389 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~ 389 (502)
. + . ..+ +..+++|.++|+++.|+++.|..+...++.
T Consensus 85 ~-l---~-~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~ 120 (413)
T PLN02868 85 G-L---S-GSV------HSADVVAVSELTCLVLPHEHCHLLSPKSIW 120 (413)
T ss_pred h-h---C-CCC------cccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence 4 2 2 222 488999999999999999999988766553
No 23
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=117.49 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRV 204 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~ 204 (502)
++.-=.+++||++|||||||||++|.|..-++++..+.+.|+++.|+-|..|.+=+....+..+..++
T Consensus 375 FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~ 442 (477)
T KOG3713|consen 375 FTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREK 442 (477)
T ss_pred CccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHH
Confidence 33445789999999999999999999999999999999999999999888877777666655554433
No 24
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.75 E-value=7.2e-08 Score=89.07 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHHhhcccCCCccccC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 010766 135 DFPKKFFYCFWWGLRNLSSLGQNLKTST-----FVGEVFFA-IFISISGLVLFALLIGNM 188 (502)
Q Consensus 135 ~~~~~Yl~slYwa~~t~ttvGyGdi~p~-----~~~E~~~~-i~~~~~g~~~~a~ii~~i 188 (502)
+.++.|..|+||++.++|+.|+||+.+. +..+.++. ++..+++.++++.++|.|
T Consensus 141 ~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 141 ENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 4567899999999999999999999887 88999998 666666668888888865
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=2e-08 Score=97.14 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=102.9
Q ss_pred HHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCC
Q 010766 257 IKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKA 336 (502)
Q Consensus 257 i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~ 336 (502)
....||.+++++.|.+..+...+...++..+.++.|++|+.|+.+|+.++.+|+|.+|.|.+....+| + .+ .++.
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~ 307 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKK 307 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eech
Confidence 34567899999999999999999999999999999999999999999999999999999998865554 2 24 8999
Q ss_pred CCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHh
Q 010766 337 GDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF 387 (502)
Q Consensus 337 G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~ 387 (502)
|++||+.+++ ...| +.+++.|.+...+..++++.|+.++.--
T Consensus 308 ~dyfge~al~---~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 308 GDYFGELALL---KNLP------RAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hhhcchHHHH---hhch------hhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9999999985 3333 5899999999999999999999998653
No 26
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.68 E-value=6.9e-09 Score=99.88 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 010766 138 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNM 188 (502)
Q Consensus 138 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i 188 (502)
+.--.||+||++|||||||||..|.|..-+++..++.+.|++-.|.-+..|
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 344568999999999999999999999999999999999998887755443
No 27
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.56 E-value=6.6e-07 Score=91.09 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhh
Q 010766 136 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSH 215 (502)
Q Consensus 136 ~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 215 (502)
-+.-|-.|++|.+.|+|||||||++|.|-.-++.+.++.++|..+||.--|.+++=+.-.-+.++ + -++|-+.
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~--R-----QKHf~rr 338 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH--R-----QKHFNRR 338 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH--H-----HHHHHhh
Confidence 46689999999999999999999999999999999999999999999877776665543322222 1 1356666
Q ss_pred ccCchhHHHHHHHHHH
Q 010766 216 RMLPENLRDRIRRYEQ 231 (502)
Q Consensus 216 ~~l~~~l~~rv~~y~~ 231 (502)
++.-..|-+-.-+||.
T Consensus 339 r~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYA 354 (654)
T ss_pred cchHHHHHHHHHHHHh
Confidence 7777777776666664
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.44 E-value=2.8e-06 Score=87.02 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 192 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~ 192 (502)
.+..|+||+++|+|||||||+.|.+...++++++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999998886644
No 29
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1e-05 Score=81.02 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhh
Q 010766 136 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSH 215 (502)
Q Consensus 136 ~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 215 (502)
....|+.|++....|+.++||||++|.|..-+.++++.-++|+++.|.+++.++--+. ...-.+++++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 5567999999999999999999999999999999999999999999999998865553 33445678999999
Q ss_pred ccCchhHHHHHHHHHHHHHHh
Q 010766 216 RMLPENLRDRIRRYEQYKWQE 236 (502)
Q Consensus 216 ~~l~~~l~~rv~~y~~~~~~~ 236 (502)
.++.++.++-..+=++..|.-
T Consensus 356 tqLTk~~KnAAA~VLqeTW~i 376 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWLI 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777777754
No 30
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.19 E-value=1.5e-06 Score=88.60 Aligned_cols=128 Identities=15% Similarity=0.267 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhcc
Q 010766 138 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRM 217 (502)
Q Consensus 138 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~ 217 (502)
..|..|.|+-++||+||||||+...|..-+.|.++.++.|..+||..+..|.+++.+.+.---+|+..- =+++-
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh------gkkhi 360 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH------GKKHI 360 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc------CCeeE
Confidence 469999999999999999999999999999999999999999999999999999976654333332210 00000
Q ss_pred C--chhHHHHHHHHHHHHHHh-hcCCC-HHHHHhcCChHHHHHHHHHHHHHHhccCcCccC
Q 010766 218 L--PENLRDRIRRYEQYKWQE-TRGVE-EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEK 274 (502)
Q Consensus 218 l--~~~l~~rv~~y~~~~~~~-~~~~~-~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ 274 (502)
+ ..-..+.|..|++...++ ....+ |-.++...||+|.-+ .+++..+.++.+|++
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 0 111223344444333232 22233 345688889988544 356667778888875
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.13 E-value=3.4e-06 Score=90.35 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=94.4
Q ss_pred HHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCC
Q 010766 278 QLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSN 356 (502)
Q Consensus 278 ~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~ 356 (502)
.++..+-..+....+.+|+.++++||.++.+|+|.+|.++.... .+|+..+ +..++.||.+|+.+.+ ...+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~l---t~~~--- 570 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEML---TKQP--- 570 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHh---hcCC---
Confidence 34556666788899999999999999999999999999998854 3444333 5999999999999984 4443
Q ss_pred CCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 010766 357 RPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFH 402 (502)
Q Consensus 357 ~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~ 402 (502)
|..++.|+.++++.+||..-|..+..+||.+..++.+...+..
T Consensus 571 ---R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 ---RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred ---ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999998876666655544
No 32
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.07 E-value=5.6e-07 Score=87.65 Aligned_cols=60 Identities=18% Similarity=0.397 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 010766 134 HDFPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFAL----LIGNMQKYLE 193 (502)
Q Consensus 134 ~~~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~----ii~~i~~i~~ 193 (502)
++.++.--.+|++.++||||.||||.+|.|..-++|..++.+.|+++.|. |+++++.|..
T Consensus 351 at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 351 ATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred ccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 33455566789999999999999999999999999999999999998886 5566666654
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.99 E-value=4.5e-05 Score=76.29 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhcccCCCc--cccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 138 KKFFYCFWWGLRNLSSLGQNL--KTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 138 ~~Yl~slYwa~~t~ttvGyGd--i~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
..+..+|+|++.|+||+|||. +.|....-.++.++=+++|.++.|+++|.+-.-++.-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 358999999999999999998 5666666667777888999999999999887666543
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.95 E-value=0.0001 Score=79.30 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=86.9
Q ss_pred HHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcc
Q 010766 283 MCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLST 361 (502)
Q Consensus 283 l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~ 361 (502)
+...++...+..||++++.|++.+.+|.+.+|...++. ..+|++.. +..+.+|+.|.....+ ++.-+..-...++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSi--Ld~l~~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSI--LDSLPGFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHH--HHhccCCCcccce
Confidence 33778888999999999999999999999999999885 44566654 5999999877766543 2221111112347
Q ss_pred cEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010766 362 RTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 399 (502)
Q Consensus 362 ~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~ 399 (502)
..++|.++|.+..++...|.+....||+-..++.|.++
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHH
Confidence 78999999999999999999999999986654444433
No 35
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.77 E-value=0.0014 Score=60.40 Aligned_cols=96 Identities=9% Similarity=0.006 Sum_probs=74.0
Q ss_pred HHHHHHhccceeeeCCCCEE-EecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCC
Q 010766 279 LLDAMCDHLKPVLYTEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNR 357 (502)
Q Consensus 279 ~l~~l~~~~~~~~~~~ge~I-~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~ 357 (502)
..+.+....++..+++|..+ ....+..+.++++.+|.|.+. ..++ - .+........||-...+ .+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~-l---l~~t~~aP~IlGl~~~~---~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN-V---LIGITQAPYIMGLADGL---MKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC-e---EEEeccCCeEeeccccc---CCCC----
Confidence 45667777888999999997 444444467999999999995 3333 1 45788888999987753 3331
Q ss_pred CCcccEEEEccceeEEEecHHHHHHHHHHhH
Q 010766 358 PLSTRTVQALTEVEAFSLMADDLKSVASQFR 388 (502)
Q Consensus 358 ~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P 388 (502)
..+.++|.++|+++.++.++|.++++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 25789999999999999999999998865
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.73 E-value=3.7e-05 Score=80.05 Aligned_cols=59 Identities=15% Similarity=0.371 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 197 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~ 197 (502)
-+..|+||+.+++||+|||++.|.|...++++|+..++|.-++..+++.++..+...-.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999875533
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.70 E-value=0.0017 Score=56.18 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=84.6
Q ss_pred CCHHHHHHHHhc-cceeeeCCCCEEEecC-CCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCC
Q 010766 275 MDDQLLDAMCDH-LKPVLYTEKSFIVREG-DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQ 352 (502)
Q Consensus 275 ls~~~l~~l~~~-~~~~~~~~ge~I~~~G-e~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~ 352 (502)
.|....+.++.. .+...+++|+.-.-|| .+.+.+-++++|.+++... |+ .+..+.|.+|...-++.. ..++
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~----fLH~I~p~qFlDSPEW~s-~~~s 87 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR----FLHYIYPYQFLDSPEWES-LRPS 87 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE----eeEeecccccccChhhhc-cccC
Confidence 578888888887 7778899999999998 4568999999999999874 33 468888888887776631 1111
Q ss_pred CCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 353 SSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 353 ~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
.. ..-..++.|.++|..+.-+++.+..++...|-++.
T Consensus 88 -~~--~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~ 124 (153)
T PF04831_consen 88 -ED--DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA 124 (153)
T ss_pred -CC--CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH
Confidence 11 12377999999999999999999999999997654
No 38
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0035 Score=62.05 Aligned_cols=59 Identities=17% Similarity=0.393 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcccCCCccccCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTF--VGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 197 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~--~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~ 197 (502)
....||-|++-|=||+|||--.++. ..-.+..++=+++|+++-|+++|.+-.-+..-.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 4788999999999999999765542 1223444455678889999999887666554433
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.00037 Score=67.20 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 192 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~ 192 (502)
.=+..-|||||++.+||+|||-.+|.|+.-++|+++..++|+-+.-.++..+++-+
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERl 133 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERL 133 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHH
Confidence 33677899999999999999999999999999999999999888777666665444
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.011 Score=57.21 Aligned_cols=60 Identities=13% Similarity=0.273 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcccCCCccccCC-------hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTF-------VGEV-FFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~-------~~E~-~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
.|..|+||.+.|+||+|+||.++.- ..++ .++.+.+++|..+++-.++.+.-.+..++..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4999999999999999999987642 2333 5667777888888887777776666555443
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.80 E-value=0.023 Score=59.89 Aligned_cols=115 Identities=13% Similarity=0.232 Sum_probs=88.3
Q ss_pred HHHHHHHhccCcCccCCCHHHHHHHHhccceeee-CCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCC
Q 010766 259 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLY-TEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 337 (502)
Q Consensus 259 ~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~-~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G 337 (502)
.+...+++.+.|-|.+++-...++|+..|..... .+|.+++..|+.-+.-+.|+.|+|++..+++.. ..+.-|
T Consensus 276 ieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mG 349 (1283)
T KOG3542|consen 276 IEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMG 349 (1283)
T ss_pred HHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecc
Confidence 3445688889999999999999999988877664 689999999999999999999999999987765 456678
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHh
Q 010766 338 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF 387 (502)
Q Consensus 338 ~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~ 387 (502)
+.||...- .+..-. -..--.-+.||+..+|...|+-.++..-
T Consensus 350 nSFG~~PT---~dkqym-----~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 350 NSFGAEPT---PDKQYM-----IGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred cccCCCCC---cchhhh-----hhhhheecccceEEEeehhhHHHHHHHH
Confidence 88987643 111100 0001134579999999999999888653
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.0037 Score=64.98 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCChhhH--------HHHHHHHHHHHHHHHHHH
Q 010766 138 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEV--------FFAIFISISGLVLFALLI 185 (502)
Q Consensus 138 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~--------~~~i~~~~~g~~~~a~ii 185 (502)
--|+.|+||+++++||+|+||+.|.+...+ .+..++.++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 358999999999999999999999997755 577778888888777776
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.00 E-value=2.7 Score=48.74 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHhhhhhhhhhcc
Q 010766 7 FCQYVPRIARIYPLYNDVKRTS 28 (502)
Q Consensus 7 ~~~~l~rllr~~rl~~~~~~~~ 28 (502)
.+..+.|++|++|+.+.+....
T Consensus 1299 IFLsiLKfLRLLRFNPrL~vLt 1320 (1634)
T PLN03223 1299 IILLLGRILKLMDFQPRLGVIT 1320 (1634)
T ss_pred HHHHHHHHHHHhccChhHHHHH
Confidence 4445668888887777766443
No 44
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.76 E-value=0.084 Score=54.48 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFA 170 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~ 170 (502)
.-..|+||.++|++||||||..|.-..-.++.
T Consensus 217 ~lf~s~y~v~vtfstvgygd~~pd~w~sql~~ 248 (1087)
T KOG3193|consen 217 DLFTSFYFVMVTFSTVGYGDWYPDYWASQLCV 248 (1087)
T ss_pred eeeeeEEEEEEEEeeccccccccccchhhHHH
Confidence 35678999999999999999999754444443
No 45
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=87.89 E-value=0.19 Score=31.60 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=17.4
Q ss_pred cchhhhHhHHhhhhhchhhhhcc
Q 010766 451 LGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 451 ip~~~iASylGi~~~~lsrir~~ 473 (502)
+....||+|+|.++++.||+-++
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHH
Confidence 45678999999999999998554
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=87.75 E-value=0.72 Score=49.11 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=72.9
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
...+.+...|.++-..-++.++.......++...++|+.|++++..|++++|.|-+. | ..+-|...||-
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g-------qi~mp~~~fgk 104 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G-------QIYMPYGCFGK 104 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-------ceecCcccccc
Confidence 346677888888888999999999999999999999999999999999999998653 2 33444456665
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHH
Q 010766 343 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMAD 378 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~ 378 (502)
-.- +. |+.+.--+++++.++++..
T Consensus 105 r~g-----~~-------r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 105 RTG-----QN-------RTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred ccc-----cc-------cccceeeecccceeeeecC
Confidence 431 11 4778888899999988543
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=82.89 E-value=7 Score=35.34 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=53.4
Q ss_pred HHhHhHHHHhhhccCchhHHHHHHHHHHHHHHh--hcCCCHHHHHhcC--ChHHHHHHHHHHHHHHhccCcCccCCCHH
Q 010766 204 VKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQE--TRGVEEEGLLRNL--PKDLRRDIKRHLCWDLLMRVPMFEKMDDQ 278 (502)
Q Consensus 204 ~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~~~~~l~~~~~F~~ls~~ 278 (502)
+-++++++|++ ++|++.++.+..+|+-.+.+ ..+.+|+++..+| |.++-+|+..+.-.+-.+.-+-+.+.+..
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 44677888885 89999999999999888776 3666799999998 56666666666555555555555555443
No 48
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.96 E-value=81 Score=35.12 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=48.1
Q ss_pred cccCCCccccCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhHHHHhhhccCchhHHH
Q 010766 152 SSLGQNLKTSTFVG------EVFFAIFISISGLVLFALLIGNMQKYLESTTVRL-EEMRVKRQDAEQWMSHRMLPENLRD 224 (502)
Q Consensus 152 ttvGyGdi~p~~~~------E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~-~~~~~~~~~i~~~m~~~~l~~~l~~ 224 (502)
.|+|+||....... -.+|.+++.++..+++-.+|+.|++-.......+ ++.+..- ...-.|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~-A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQW-AATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHH-HHHHHHHHhcCCHHHHH
Confidence 58999997655432 3466666677777777778888888777666555 3343333 23344556778887777
Q ss_pred HHH
Q 010766 225 RIR 227 (502)
Q Consensus 225 rv~ 227 (502)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 633
No 49
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=79.74 E-value=8.9 Score=32.67 Aligned_cols=69 Identities=7% Similarity=0.011 Sum_probs=43.5
Q ss_pred ceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEc
Q 010766 288 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 367 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~ 367 (502)
....++||...-..-....++++|++|.+.+...++|++ ..+.+||.+---+- .+..+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~-----~~L~aGD~i~~~~~--------------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV-----HPIRPGTMYALDKH--------------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-----EEeCCCeEEEECCC--------------CcEEEEcC
Confidence 345678887553322222479999999999873333443 78999998743331 14456666
Q ss_pred cceeEEEe
Q 010766 368 TEVEAFSL 375 (502)
Q Consensus 368 ~~~~l~~i 375 (502)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 88877765
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=74.87 E-value=16 Score=33.18 Aligned_cols=57 Identities=26% Similarity=0.497 Sum_probs=44.1
Q ss_pred HHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHh--hcCCCHHHHHhcC--ChHHHHHHHHHH
Q 010766 203 RVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQE--TRGVEEEGLLRNL--PKDLRRDIKRHL 261 (502)
Q Consensus 203 ~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~ 261 (502)
++=+++++.+++ ++|++-++.+.+||+-...+ .+|.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 344677888886 69999999999999888876 4667899999997 556666655443
No 51
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=73.43 E-value=6.8 Score=28.95 Aligned_cols=44 Identities=32% Similarity=0.373 Sum_probs=31.9
Q ss_pred eeeCCCCEEEecCCCcC-eEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 290 VLYTEKSFIVREGDPVE-EMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 290 ~~~~~ge~I~~~Ge~~~-~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
..++||+..-..-.... .+++|++|.+.+.. + ++. ..+.+||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~-~~~-----~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D-GER-----VELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T-TEE-----EEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c-cEE-----eEccCCEEE
Confidence 45778886655554555 89999999999883 3 332 778899876
No 52
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=69.77 E-value=61 Score=32.03 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=31.0
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~ 476 (502)
++..+.+.+++. ..+.+..+|+.+|+++.+++|+-|+..+
T Consensus 194 ~~~~~~i~~~~~--~~~tl~~lA~~~~~S~~~l~r~Fk~~~G 233 (302)
T PRK10371 194 SQMLGFIAENYD--QALTINDVAEHVKLNANYAMGIFQRVMQ 233 (302)
T ss_pred HHHHHHHHHhhc--CCCCHHHHHHHHCcCHHHHHHHHHHHhC
Confidence 344555666554 5799999999999999999999777543
No 53
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=69.19 E-value=14 Score=32.74 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=43.8
Q ss_pred CCCCEE-EecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccee
Q 010766 293 TEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVE 371 (502)
Q Consensus 293 ~~ge~I-~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~ 371 (502)
.||+.. +...+ .++++++++|.+.+-..++|+-+ ...+++||+|=--.- . +.+-++.++|.
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flvP~g------v--------pHsP~r~~~t~ 97 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLLPPH------V--------PHSPQRPAGSI 97 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEeCCC------C--------CcccccCCCcE
Confidence 444433 44433 78999999999999876666432 368999998832221 1 33445556777
Q ss_pred EEEecHHH
Q 010766 372 AFSLMADD 379 (502)
Q Consensus 372 l~~i~~~~ 379 (502)
+++|.+..
T Consensus 98 ~LvIE~~r 105 (159)
T TIGR03037 98 GLVIERKR 105 (159)
T ss_pred EEEEEeCC
Confidence 77776653
No 54
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.93 E-value=7.8 Score=33.44 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhh
Q 010766 136 FPKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSH 215 (502)
Q Consensus 136 ~~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 215 (502)
.......++++.+.+++. +-++..|.+...+++.+++.+++.++.+..-+++++.+..... ...++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHHC
Confidence 455777888888888776 4467899999999999999999999999999999998865432 2334555565554
Q ss_pred c
Q 010766 216 R 216 (502)
Q Consensus 216 ~ 216 (502)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 55
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=62.67 E-value=17 Score=27.69 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=28.3
Q ss_pred CCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 293 TEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 293 ~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
.||..=..-. .+++.+|++|.|.+... +|.. ..+++||.|-
T Consensus 15 ~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~~-----~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYP--EDEFFYVLEGEVTITDE-DGET-----VTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEES--SEEEEEEEEEEEEEEET-TTEE-----EEEETTEEEE
T ss_pred CCceeEeeCC--CCEEEEEEEeEEEEEEC-CCCE-----EEEcCCcEEE
Confidence 4454433332 27888999999998865 4543 7789999873
No 56
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=62.59 E-value=35 Score=24.53 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=10.6
Q ss_pred HHHHHhHhHHHHhhh
Q 010766 201 EMRVKRQDAEQWMSH 215 (502)
Q Consensus 201 ~~~~~~~~i~~~m~~ 215 (502)
...+|++++-+.+.+
T Consensus 43 ~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 43 SMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHcc
Confidence 577888888777643
No 57
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=61.82 E-value=55 Score=29.15 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhh
Q 010766 38 GAALNLFLYMLASHIFGACWYLYSI 62 (502)
Q Consensus 38 ~~~~~l~~~~~~~H~~aC~w~~i~~ 62 (502)
.....++.++++.|++||+++.+.-
T Consensus 96 ~l~~~~~~~~~~~~~~a~~~~~lf~ 120 (200)
T PF00520_consen 96 DLFKFILLLFIVLLFFACIGYQLFG 120 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhheecc
Confidence 3444556677778999999988883
No 58
>PHA02909 hypothetical protein; Provisional
Probab=60.29 E-value=19 Score=25.55 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhh
Q 010766 36 WAGAALNLFLYMLASHIFGACWYLYSI 62 (502)
Q Consensus 36 ~~~~~~~l~~~~~~~H~~aC~w~~i~~ 62 (502)
++.++++.+.++-+..++||.|.+||+
T Consensus 35 mvsfilfviiflsmftilacsyvyiai 61 (72)
T PHA02909 35 MVSFILFVIIFLSMFTILACSYVYIAI 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555567899999999994
No 59
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=56.64 E-value=99 Score=32.22 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=14.0
Q ss_pred HHhHHHHHHHhhhhhhhhhccc
Q 010766 8 CQYVPRIARIYPLYNDVKRTSG 29 (502)
Q Consensus 8 ~~~l~rllr~~rl~~~~~~~~~ 29 (502)
+.-..|++|++|+.+.+.....
T Consensus 305 fl~~lrll~~l~f~~~~~~~~~ 326 (425)
T PF08016_consen 305 FLLWLRLLKLLRFNRRLSLLSR 326 (425)
T ss_pred HHHHHHHhhheeecchHHHHHH
Confidence 3335677777777776664444
No 60
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=55.29 E-value=89 Score=30.25 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=34.2
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
+|..+++++++. ..+++..+|..+|+++.+++|+-|+..+.+
T Consensus 189 ~~~~~~I~~~~~--~~~sl~~lA~~~~~S~~~l~r~Fk~~~G~t 230 (287)
T TIGR02297 189 NRFNFLIEENYK--QHLRLPEYADRLGISESRLNDICRRFSALS 230 (287)
T ss_pred HHHHHHHHHhhc--cCCCHHHHHHHHCCCHHHHHHHHHHHhCCC
Confidence 456667777765 468999999999999999999988877655
No 61
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=54.93 E-value=41 Score=28.54 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=35.3
Q ss_pred ccceeeeCCCCEE-EecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 286 HLKPVLYTEKSFI-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 286 ~~~~~~~~~ge~I-~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
.+....++||+-+ .+.-...+++|+|++|...+... +++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~-----~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE-----VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE-----EEecCCCEE
Confidence 4556667888875 44445579999999999998875 333 677888866
No 62
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=54.91 E-value=3.8e+02 Score=30.72 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=29.8
Q ss_pred ccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcCChHHHHHHHHHHHHH
Q 010766 216 RMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWD 264 (502)
Q Consensus 216 ~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~ 264 (502)
..+|+.++.+|..++.... +....+++.++++...++...+...
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~~~ 400 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMKAE 400 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhhee
Confidence 3688999998887654322 2334578888888888777666443
No 63
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=54.09 E-value=70 Score=32.77 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 197 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~ 197 (502)
.--|+.+|-|++..+.+++-++.......=..+++++.+++.+.+-+.|.+++..++-.+-
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~i 158 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNI 158 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4579999999999998888776522222337777788888888888888888877754433
No 64
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=53.89 E-value=26 Score=31.70 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHH
Q 010766 303 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADD 379 (502)
Q Consensus 303 e~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~ 379 (502)
+..++++++++|.+.+...++|+-. ...+.+||+|=--.- . +.+-++..+|..++|.+..
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fllP~g------v--------pHsP~r~~~tv~LviE~~r 111 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLLPPH------V--------PHSPQREAGSIGLVIERKR 111 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEeCCC------C--------CcCCccCCCeEEEEEEeCC
Confidence 4578999999999998887666422 267899998832221 1 2233455777777776543
No 65
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=50.71 E-value=2.4e+02 Score=27.16 Aligned_cols=28 Identities=7% Similarity=-0.217 Sum_probs=23.1
Q ss_pred cchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 451 LGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 451 ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
..+..+|...|+++.+++|+=|+..+.+
T Consensus 189 ~~l~~lA~~~~~s~~~l~r~fk~~~G~t 216 (278)
T PRK10296 189 SALENMVRLSGKSQEYLTRATRRYYGKT 216 (278)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHCcC
Confidence 4678899999999999999977766544
No 66
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=49.75 E-value=39 Score=28.63 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=39.2
Q ss_pred cceeeeCCCCEEEecCCC-cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhh
Q 010766 287 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEAL 344 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~ 344 (502)
+....++||+.+-..--+ .+...+|++|.+++... |+. ..+.+||++-.-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~-----~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEK-----KELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCc-----eEecCCCEEEECC
Confidence 445668888888777666 77899999999998876 433 7789999885543
No 67
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=49.52 E-value=7.6 Score=25.76 Aligned_cols=32 Identities=16% Similarity=-0.086 Sum_probs=23.0
Q ss_pred cccccchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 447 ALTSLGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 447 ~~~~ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
+.+.+++..+|+.+|+++.+++|+-|+..+.|
T Consensus 5 ~~~~~~l~~iA~~~g~S~~~f~r~Fk~~~g~t 36 (42)
T PF00165_consen 5 LQQKLTLEDIAEQAGFSPSYFSRLFKKETGMT 36 (42)
T ss_dssp T-SS--HHHHHHHHTS-HHHHHHHHHHHTSS-
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcC
Confidence 44668899999999999999999977766544
No 68
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=48.57 E-value=10 Score=29.16 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhcc
Q 010766 429 SLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 429 ~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~ 473 (502)
.+...+.++.+++..+|+-....+...||.-.|+++-+.+|.=|+
T Consensus 13 ~ls~~e~~Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kk 57 (77)
T PF01418_consen 13 SLSPTEKKIADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKK 57 (77)
T ss_dssp GS-HHHHHHHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHH
Confidence 345677889999999999999999999999999999999998554
No 69
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=48.53 E-value=34 Score=31.23 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhchh
Q 010766 427 AQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPL 468 (502)
Q Consensus 427 ~~~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~ls 468 (502)
+.....+.++|.+-...|...+...|...+|+-+|.++...-
T Consensus 131 E~~I~~aR~~YN~av~~yN~~i~~FP~~lvA~~~gf~~~~~f 172 (186)
T PF04011_consen 131 ENRIAAARRAYNDAVRDYNTAIRQFPTNLVAGIFGFKPKEYF 172 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCCcCCCc
Confidence 346667778888888888888889999999999998877654
No 70
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=47.00 E-value=2.6e+02 Score=27.04 Aligned_cols=42 Identities=5% Similarity=-0.050 Sum_probs=32.7
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
++..+++.+++. ..+....+|..+|+++.+++|+-|+..+.+
T Consensus 186 ~~~~~~i~~~~~--~~isl~~lA~~~~lS~~~l~r~Fk~~~G~t 227 (290)
T PRK10572 186 REACQYISDHLA--SEFDIESVAQHVCLSPSRLAHLFRQQLGIS 227 (290)
T ss_pred HHHHHHHHhccc--CCCCHHHHHHHHCCCHHHHHHHHHHHHCcC
Confidence 345556665555 789999999999999999999977765544
No 71
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=46.88 E-value=29 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.6
Q ss_pred cccchhhhHhHHhhhhhchhhhhcc
Q 010766 449 TSLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 449 ~~ip~~~iASylGi~~~~lsrir~~ 473 (502)
..++|+.||..+||+..+.||.-|-
T Consensus 54 ~~~tQrEIa~~lGiS~atIsR~sn~ 78 (94)
T TIGR01321 54 GNMSQREIASKLGVSIATITRGSNN 78 (94)
T ss_pred CCCCHHHHHHHhCCChhhhhHHHhh
Confidence 3589999999999999999987553
No 72
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=42.34 E-value=43 Score=27.63 Aligned_cols=44 Identities=23% Similarity=0.515 Sum_probs=33.5
Q ss_pred cCchhHHHHHHHHHHHHHHh----------hcCCCHHHHHhcCChHHHHHHHHH
Q 010766 217 MLPENLRDRIRRYEQYKWQE----------TRGVEEEGLLRNLPKDLRRDIKRH 260 (502)
Q Consensus 217 ~l~~~l~~rv~~y~~~~~~~----------~~~~~~~~il~~Lp~~Lr~~i~~~ 260 (502)
-+|.+++..|...+.-.-.. ....+.-.++..||+.||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 68999999999888654333 122345789999999999999765
No 73
>PRK01381 Trp operon repressor; Provisional
Probab=40.50 E-value=40 Score=27.35 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=20.5
Q ss_pred ccchhhhHhHHhhhhhchhhhhcc
Q 010766 450 SLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 450 ~ip~~~iASylGi~~~~lsrir~~ 473 (502)
..|+..||..||+..-+.+|--+.
T Consensus 55 ~~sQREIa~~lGvSiaTITRgsn~ 78 (99)
T PRK01381 55 ELSQREIKQELGVGIATITRGSNS 78 (99)
T ss_pred CcCHHHHHHHhCCceeeehhhHHH
Confidence 489999999999999999985443
No 74
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=40.36 E-value=83 Score=27.23 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=36.0
Q ss_pred cceeeeCCCCEEEecCC-CcCeEEEEEeeEEEEEEecC-ceeeeeEeEEeCCCCeech
Q 010766 287 LKPVLYTEKSFIVREGD-PVEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge-~~~~lyfI~~G~v~~~~~~~-~~e~~~~i~~l~~G~~fGe 342 (502)
+....+.||...-..-- ...++++|++|...+...+. +++. ....+.+||.+-.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~--~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKV--YDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeE--EEEEecCCCEEEE
Confidence 44556788887644432 25689999999999886443 3232 2378999997743
No 75
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=40.08 E-value=14 Score=25.38 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=18.4
Q ss_pred ccchhhhHhHHhhhhhchhhhhccCC
Q 010766 450 SLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 450 ~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
-.+...||..||++..+..|++++..
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~ 42 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYR 42 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT---
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence 45677899999999999999988754
No 76
>TIGR01636 phage_rinA phage transcriptional activator, RinA family. This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors.
Probab=38.82 E-value=1.8e+02 Score=24.95 Aligned_cols=98 Identities=9% Similarity=0.046 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhh---------------hhhhHHHH----HHHHHHH--HHhhHHHHHHHHHHH
Q 010766 377 ADDLKSVASQFRRLHSKQLQHAFRFHSVQ---------------WRTWAACF----IQAAWRR--HSKKKLAQSLQEAED 435 (502)
Q Consensus 377 ~~~f~~ll~~~P~~~~~~l~~~~~~~~~~---------------~~~~~~~~----~q~~~~~--~~~r~~~~~~~~a~e 435 (502)
...+++.+.+||....++...-....... .+.....+ ....+.. .....+...+....+
T Consensus 6 ~k~le~~L~~y~~~~~~i~~r~~El~~~~~~~D~NiGg~~~~~~~~~tE~~~ik~~~D~~l~~le~~~~~I~~~l~~Ld~ 85 (134)
T TIGR01636 6 FNYIEDELADYYKTEKYLRQREEELRHPYQEADLNAGGRGQGLHSVVTERMVITIAMDRRLWNLERNRDAIENCLNEADE 85 (134)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHcCCCCCCCccCCccccCCCCcHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCH
Confidence 34567788888887766655554443110 01111111 1111111 122334444444455
Q ss_pred HHHHHHhh-ccccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 436 RLQDALAT-EAGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 436 ry~~ll~~-~p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
+.+.++.. |-.-.. .....||..||++..+..|+|++..
T Consensus 86 ~er~II~~rY~~~~~-~t~~~Ia~~l~iS~~t~~r~r~~~l 125 (134)
T TIGR01636 86 QTRVIIQELYMKKRP-LTLVGLAQQLFISKSTAYRLRNHII 125 (134)
T ss_pred HHHHHHHHHHccCCC-CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55555544 322222 6789999999999999999988654
No 77
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=38.08 E-value=5.6e+02 Score=27.85 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=25.8
Q ss_pred HhcCChHHHHHHHHHHHHHHhcc-----CcCccCCCHHHHHHHHhccceeee
Q 010766 246 LRNLPKDLRRDIKRHLCWDLLMR-----VPMFEKMDDQLLDAMCDHLKPVLY 292 (502)
Q Consensus 246 l~~Lp~~Lr~~i~~~~~~~~l~~-----~~~F~~ls~~~l~~l~~~~~~~~~ 292 (502)
|.+.|..|-+.++..+...+-.. -+.+.-++.+....++-++..+.|
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVF 550 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVF 550 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhh
Confidence 55788899888887776554211 122333444444455544444444
No 78
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=37.80 E-value=39 Score=24.11 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=27.7
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhc
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~ 472 (502)
-++...+...|+- .+++..||..+|+++.++||+=+
T Consensus 8 ~~vL~~l~~~~~~--~~t~~~la~~l~~~~~~vs~~v~ 43 (62)
T PF12802_consen 8 FRVLMALARHPGE--ELTQSELAERLGISKSTVSRIVK 43 (62)
T ss_dssp HHHHHHHHHSTTS--GEEHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHCCCC--CcCHHHHHHHHCcCHHHHHHHHH
Confidence 3556667777764 67899999999999999999844
No 79
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=37.38 E-value=1.3e+02 Score=27.86 Aligned_cols=59 Identities=20% Similarity=0.403 Sum_probs=40.0
Q ss_pred hcCChHHHHHHHHHHHHHHhccCcCcc-CCCHHHHHHHHhccceee--eCCCCEEEecCCCcC
Q 010766 247 RNLPKDLRRDIKRHLCWDLLMRVPMFE-KMDDQLLDAMCDHLKPVL--YTEKSFIVREGDPVE 306 (502)
Q Consensus 247 ~~Lp~~Lr~~i~~~~~~~~l~~~~~F~-~ls~~~l~~l~~~~~~~~--~~~ge~I~~~Ge~~~ 306 (502)
..+|+. ...+...+...++.---.|. ..++...+.......+.. +++||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345555 34444444444443333333 457777888889999999 999999999999764
No 80
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=37.24 E-value=15 Score=27.68 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=22.0
Q ss_pred cccccchhhhHhHHhhhhhchhhhhc
Q 010766 447 ALTSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 447 ~~~~ip~~~iASylGi~~~~lsrir~ 472 (502)
+...+++..||+++|++.++.+|+-+
T Consensus 25 ~~~~lt~~~iA~~~g~sr~tv~r~l~ 50 (76)
T PF13545_consen 25 IPLPLTQEEIADMLGVSRETVSRILK 50 (76)
T ss_dssp EEEESSHHHHHHHHTSCHHHHHHHHH
T ss_pred EEecCCHHHHHHHHCCCHHHHHHHHH
Confidence 34558899999999999999999843
No 81
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=37.01 E-value=15 Score=29.45 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=23.2
Q ss_pred cccccccchhhhHhHHhhhhhchhhhh
Q 010766 445 AGALTSLGATMYASKFAANLLHPLRLR 471 (502)
Q Consensus 445 p~~~~~ip~~~iASylGi~~~~lsrir 471 (502)
+.....+++..||+.+|+++++.||+-
T Consensus 42 ~~~~~~is~~eLa~~~g~sr~tVsr~L 68 (95)
T TIGR01610 42 NKKQDRVTATVIAELTGLSRTHVSDAI 68 (95)
T ss_pred cccCCccCHHHHHHHHCcCHHHHHHHH
Confidence 346678899999999999999999963
No 82
>COG4325 Predicted membrane protein [Function unknown]
Probab=35.08 E-value=3e+02 Score=28.23 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHhhcccC-----CCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 136 FPKKFFYCFWWGLRNLSSLG-----QNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 136 ~~~~Yl~slYwa~~t~ttvG-----yGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
....++..|-|++..++||| +|-..|. .-...+++..+++.+.+-|.+..++..++-.+.-
T Consensus 129 vLa~FlctFvysl~vlrtvg~e~d~~g~FIp~--~avtv~lLlaiisig~~iyfl~~l~~siq~~n~i 194 (464)
T COG4325 129 VLAIFLCTFVYSLGVLRTVGEERDGQGAFIPK--VAVTVSLLLAIISIGALIYFLHHLMHSIQIDNII 194 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCccccceeh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999996 3445554 3456666777777778888888877766544443
No 83
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=34.20 E-value=75 Score=34.32 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 193 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~ 193 (502)
.-..-.+++|+-..+...|-|.-+|.+..-++..+++.=+++++.|..-++++..+-
T Consensus 611 alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 611 ALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 334556788888888888999999999999999988888877777777777776653
No 84
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.05 E-value=8.9e+02 Score=28.37 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHhHHHHHHHhhhhhhhhhcccc
Q 010766 8 CQYVPRIARIYPLYNDVKRTSGI 30 (502)
Q Consensus 8 ~~~l~rllr~~rl~~~~~~~~~~ 30 (502)
..+++|+||-+|.+|.+.+..++
T Consensus 1224 VlrvLRlLRtlRpLRviSra~gl 1246 (1956)
T KOG2302|consen 1224 VLRVLRLLRTLRPLRVISRAPGL 1246 (1956)
T ss_pred HHHHHHHHHHhhHHHHHhhcccH
Confidence 34556666666666666655553
No 85
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=31.66 E-value=46 Score=24.20 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=26.3
Q ss_pred HHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhc
Q 010766 434 EDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 434 ~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~ 472 (502)
.|.|...+-.--+-...+....||..||+++.|.+..=+
T Consensus 6 ~e~YL~~Iy~l~~~~~~v~~~~iA~~L~vs~~tvt~ml~ 44 (60)
T PF01325_consen 6 EEDYLKAIYELSEEGGPVRTKDIAERLGVSPPTVTEMLK 44 (60)
T ss_dssp HHHHHHHHHHHHHCTSSBBHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHCCChHHHHHHHH
Confidence 344555443333355679999999999999999886533
No 86
>PHA01083 hypothetical protein
Probab=31.41 E-value=22 Score=30.96 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=25.9
Q ss_pred HHhhccccccccchhhhHhHHhhhhhchhhhhcc
Q 010766 440 ALATEAGALTSLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 440 ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~ 473 (502)
|+..+..--.++.-+.||..||+++..+|.+|+-
T Consensus 6 LLda~K~a~~~~sdkqLA~~LGVs~q~IS~~R~G 39 (149)
T PHA01083 6 LLDAYKKAKNYVQYKQIAHDLGVSPQKISKMRTG 39 (149)
T ss_pred HHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHcC
Confidence 3444444445667788999999999999999985
No 87
>PRK09108 type III secretion system protein HrcU; Validated
Probab=31.07 E-value=1.7e+02 Score=29.68 Aligned_cols=68 Identities=3% Similarity=0.144 Sum_probs=40.0
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHH
Q 010766 160 TSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIR 227 (502)
Q Consensus 160 ~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~ 227 (502)
.+......++.++..++..+..++++-.+....-+...-.++.+-..+++++-+|+..-+++++.|+|
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrR 240 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERK 240 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 33344555666666666666666655555555544433334444445577777777777777777766
No 88
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=30.64 E-value=25 Score=27.12 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=19.2
Q ss_pred cccchhhhHhHHhhhhhchhhhhc
Q 010766 449 TSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 449 ~~ip~~~iASylGi~~~~lsrir~ 472 (502)
..+.|..+|..+|+++...|||.+
T Consensus 30 ~~ltQ~e~A~~lgisq~~vS~l~~ 53 (80)
T PF13744_consen 30 RGLTQAELAERLGISQPRVSRLEN 53 (80)
T ss_dssp CT--HHHHHHHHTS-HHHHHHHHT
T ss_pred cCCCHHHHHHHHCCChhHHHHHHc
Confidence 458899999999999999999986
No 89
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=29.78 E-value=97 Score=19.70 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=19.0
Q ss_pred HhHhHHHHhhhccCc-----hhHHHHHHHHH
Q 010766 205 KRQDAEQWMSHRMLP-----ENLRDRIRRYE 230 (502)
Q Consensus 205 ~~~~i~~~m~~~~l~-----~~l~~rv~~y~ 230 (502)
++.++.++++.+++| .++..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788888888887 57888887764
No 90
>PRK13500 transcriptional activator RhaR; Provisional
Probab=29.61 E-value=5.5e+02 Score=25.24 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=31.6
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
.++.+.++++. ...+.+..+|..+|+++.+|+|+-|+..+.+
T Consensus 209 ~~i~~yI~~~~--~e~isl~~lA~~~~iS~~~L~r~FK~~tG~T 250 (312)
T PRK13500 209 DKLITRLAASL--KSPFALDKFCDEASCSERVLRQQFRQQTGMT 250 (312)
T ss_pred HHHHHHHHHcc--cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 34555565543 3458899999999999999999988766554
No 91
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=28.74 E-value=1.7e+02 Score=26.60 Aligned_cols=29 Identities=10% Similarity=-0.085 Sum_probs=23.1
Q ss_pred cchhhhHhHHhhhhhchhhhhccCCCCCCC
Q 010766 451 LGATMYASKFAANLLHPLRLRQNGSSGTRL 480 (502)
Q Consensus 451 ip~~~iASylGi~~~~lsrir~~~~~~~~~ 480 (502)
-+..++..|+|.++...++ ||++.+.+..
T Consensus 88 AS~~mm~~~FGls~~ev~~-rR~llgi~~~ 116 (180)
T PF11198_consen 88 ASIEMMQRLFGLSSAEVAA-RRRLLGIPVR 116 (180)
T ss_pred CCHHHHHHHHCCCHHHHHH-HHHHhCCCCC
Confidence 3566789999999999998 7777766654
No 92
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=28.69 E-value=93 Score=23.11 Aligned_cols=29 Identities=17% Similarity=-0.110 Sum_probs=24.9
Q ss_pred ccchhhhHhHHhh-hhhchhhhhccCCCCC
Q 010766 450 SLGATMYASKFAA-NLLHPLRLRQNGSSGT 478 (502)
Q Consensus 450 ~ip~~~iASylGi-~~~~lsrir~~~~~~~ 478 (502)
.++...+|..+|. ++.+++|.-|+..+.+
T Consensus 50 ~~~~~~ia~~~g~~s~~~f~r~Fk~~~g~s 79 (84)
T smart00342 50 DLSVTEIALRVGFSSQSYFSRAFKKLFGVT 79 (84)
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHCcC
Confidence 6899999999999 9999999977665544
No 93
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=28.24 E-value=1.8e+02 Score=22.80 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=41.5
Q ss_pred ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 010766 286 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 365 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~ 365 (502)
.+....+.||..+=...-.+....||++|.... ++ ..+.+|+++=.-.- +..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~--------~~~~~G~~~~~p~g--------------~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GD--------GRYGAGDWLRLPPG--------------SSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TT--------CEEETTEEEEE-TT--------------EEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CC--------ccCCCCeEEEeCCC--------------CccccC
Confidence 345667888888877666677788999999762 22 23477777633321 356777
Q ss_pred EccceeEEE
Q 010766 366 ALTEVEAFS 374 (502)
Q Consensus 366 A~~~~~l~~ 374 (502)
+.+.|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888875
No 94
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=27.95 E-value=61 Score=23.36 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=16.2
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 010766 243 EGLLRNLPKDLRRDIKRHL 261 (502)
Q Consensus 243 ~~il~~Lp~~Lr~~i~~~~ 261 (502)
-++++.||.+|+.++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 4689999999999987765
No 95
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=27.86 E-value=9e+02 Score=27.14 Aligned_cols=52 Identities=10% Similarity=-0.004 Sum_probs=23.1
Q ss_pred HhHHHHHHHhhhhhhhhhccccchhhhHH-HHHHHHHHHHHHHHHHhhHHhhhh
Q 010766 9 QYVPRIARIYPLYNDVKRTSGILTETAWA-GAALNLFLYMLASHIFGACWYLYS 61 (502)
Q Consensus 9 ~~l~rllr~~rl~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~H~~aC~w~~i~ 61 (502)
....|++.++|..+.+--+.-.+. ..+. .+++++++++++.=-+||..+.+-
T Consensus 478 l~~~rll~~~~~~~~lGp~~i~l~-~mi~~dl~~F~~i~~v~l~aF~~~~~~l~ 530 (743)
T TIGR00870 478 LSWLNLLYIFRGNQHLGPLQIMIG-RMILGDILRFLFIYAVVLFGFACGLNQLY 530 (743)
T ss_pred HHHHHHHHHHhhchhcCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554332222111 1233 444555444444444556555543
No 96
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=27.73 E-value=69 Score=23.84 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhh
Q 010766 432 EAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRL 470 (502)
Q Consensus 432 ~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsri 470 (502)
..++++..++...++- .+++..||..||++..+..|+
T Consensus 6 ~~~~~IL~~L~~~g~~--~~ta~eLa~~lgl~~~~v~r~ 42 (68)
T smart00550 6 SLEEKILEFLENSGDE--TSTALQLAKNLGLPKKEVNRV 42 (68)
T ss_pred HHHHHHHHHHHHCCCC--CcCHHHHHHHHCCCHHHHHHH
Confidence 3457788888877542 478999999999999988776
No 97
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=27.54 E-value=2.7e+02 Score=25.62 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=33.0
Q ss_pred cceeeeCCCCEE---------EecCCCcCeEEEEEeeEEEEEEecC-ceeeeeEeEEeCCCCee
Q 010766 287 LKPVLYTEKSFI---------VREGDPVEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 287 ~~~~~~~~ge~I---------~~~Ge~~~~lyfI~~G~v~~~~~~~-~~e~~~~i~~l~~G~~f 340 (502)
+-...+.||... +++.....++|+|++|...+...+. |+. ....+.+|+.+
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~---~~~~v~pGd~v 130 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA---RWIEMEPGTVV 130 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE---EEEEECCCCEE
Confidence 445556777753 3333334599999999999886432 221 23678999876
No 98
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=27.28 E-value=40 Score=28.54 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=31.3
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
+..+++.+++. +.+++..+|..+|+++.+++|+-|+..+.+
T Consensus 13 ~~~~~I~~~~~--~~~sl~~lA~~~g~S~~~l~r~Fk~~~G~s 53 (127)
T PRK11511 13 SILDWIEDNLE--SPLSLEKVSERSGYSKWHLQRMFKKETGHS 53 (127)
T ss_pred HHHHHHHHhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 44556666554 568899999999999999999977665543
No 99
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=27.20 E-value=76 Score=21.43 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhc
Q 010766 433 AEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 433 a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~ 472 (502)
-+.++...+.+.|+ +++..||..+|++..+.+++=+
T Consensus 4 ~~~~Il~~l~~~~~----~t~~ela~~~~is~~tv~~~l~ 39 (48)
T PF13412_consen 4 TQRKILNYLRENPR----ITQKELAEKLGISRSTVNRYLK 39 (48)
T ss_dssp HHHHHHHHHHHCTT----S-HHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CCHHHHHHHhCCCHHHHHHHHH
Confidence 34567777887776 6788999999999999987643
No 100
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=27.07 E-value=34 Score=24.83 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=20.7
Q ss_pred cccchhhhHhHHhhhhhchhhhhc
Q 010766 449 TSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 449 ~~ip~~~iASylGi~~~~lsrir~ 472 (502)
..++...||..+|++..+.+|+=+
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~ 47 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLK 47 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 458899999999999999998743
No 101
>PRK11171 hypothetical protein; Provisional
Probab=27.03 E-value=1.9e+02 Score=28.13 Aligned_cols=50 Identities=28% Similarity=0.302 Sum_probs=38.0
Q ss_pred ccceeeeCCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 286 HLKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
.+....++||..+-. ......+.++|++|...+.. ++++ ..+.+||++--
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~~-----~~l~~GD~i~~ 235 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NNDW-----VEVEAGDFIWM 235 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEEE
Confidence 456677999988866 35667799999999999865 3433 77899997643
No 102
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=26.98 E-value=2.3e+02 Score=28.84 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHH
Q 010766 163 FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIR 227 (502)
Q Consensus 163 ~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~ 227 (502)
.....+...+..+++.++.++++-.+....-+...-.++.+-..+++++-.|+..-+++++.|+|
T Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR 238 (349)
T PRK12721 174 CGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRR 238 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 33444555566666655555555444444433333333344445567777777777777777766
No 103
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=26.64 E-value=81 Score=24.84 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=21.0
Q ss_pred cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 305 VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 305 ~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
....++|.+|.|++...+. -..+.+|+.|
T Consensus 33 ~~~vF~V~~G~v~Vti~~~-------~f~v~~G~~F 61 (85)
T PF11699_consen 33 NTMVFYVIKGKVEVTIHET-------SFVVTKGGSF 61 (85)
T ss_dssp EEEEEEEEESEEEEEETTE-------EEEEETT-EE
T ss_pred cEEEEEEEeCEEEEEEcCc-------EEEEeCCCEE
Confidence 3468999999999987432 2667888877
No 104
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=26.49 E-value=2.1e+02 Score=28.81 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=51.4
Q ss_pred eeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccc
Q 010766 290 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 369 (502)
Q Consensus 290 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~ 369 (502)
+.+++|..--..-..+..+|+|.+|.-.... +++. ...++||+|.--+. ...+..|.++
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~~-----~~W~~gD~f~vPsW--------------~~~~h~a~~d 313 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDAV-----FRFSPKDVFVVPSW--------------HPVRFEASDD 313 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE--CCEE-----EEecCCCEEEECCC--------------CcEecccCCC
Confidence 5667777766666778899999999988776 3332 57899999865543 1334455677
Q ss_pred eeEEEecHHHHHHHH
Q 010766 370 VEAFSLMADDLKSVA 384 (502)
Q Consensus 370 ~~l~~i~~~~f~~ll 384 (502)
+.++.++-.-+++-+
T Consensus 314 a~Lf~~~D~Pll~~L 328 (335)
T TIGR02272 314 AVLFSFSDRPVQQKL 328 (335)
T ss_pred eEEEEecCHHHHHHh
Confidence 878888766655443
No 105
>PHA03029 hypothetical protein; Provisional
Probab=26.42 E-value=2.9e+02 Score=20.96 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=23.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 163 FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 163 ~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
++.|.+|-+++.++=.++--.+||.+-..+-+.++.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~ 37 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKI 37 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888887777776666666666665555544443
No 106
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=26.35 E-value=34 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=19.8
Q ss_pred cccchhhhHhHHhhhhhchhhhhcc
Q 010766 449 TSLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 449 ~~ip~~~iASylGi~~~~lsrir~~ 473 (502)
..+++..+|..+|+++.+++|+-+.
T Consensus 8 ~gls~~~la~~~gis~~~i~~~~~g 32 (55)
T PF01381_consen 8 KGLSQKELAEKLGISRSTISRIENG 32 (55)
T ss_dssp TTS-HHHHHHHHTS-HHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCcchhHHHhcC
Confidence 4577889999999999999998664
No 107
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=24.00 E-value=6.6e+02 Score=24.26 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=27.1
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccC
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNG 474 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~ 474 (502)
|..+++.++-.- ..+....+|..+|+++.+|+|+-|+.
T Consensus 201 ~~~~~I~~~l~~-~~ls~~~lA~~~giS~r~L~r~Fk~~ 238 (302)
T PRK09685 201 KVVALIDQSIQE-EILRPEWIAGELGISVRSLYRLFAEQ 238 (302)
T ss_pred HHHHHHHHhcCC-CCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 444555544211 12688999999999999999998764
No 108
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=23.58 E-value=48 Score=23.81 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=13.5
Q ss_pred cchhhhHhHHhhhhhchhhhhcc
Q 010766 451 LGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 451 ip~~~iASylGi~~~~lsrir~~ 473 (502)
+.+..+|...|++..+++|+.+.
T Consensus 11 it~~~La~~~gis~~tl~~~~~~ 33 (63)
T PF13443_consen 11 ITQKDLARKTGISRSTLSRILNG 33 (63)
T ss_dssp --HHHHHHHHT--HHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhc
Confidence 45666777777777777777663
No 109
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=23.36 E-value=2.1e+02 Score=29.25 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=34.6
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEec-CceeeeeEeEEeCCCCeec
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~-~~~e~~~~i~~l~~G~~fG 341 (502)
+....+.||...-..--...++.+|++|.+++...+ +|+.. ...+.+||++-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 344557777765332223568999999999998754 34441 24799999873
No 110
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.33 E-value=21 Score=25.79 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhcccCC
Q 010766 139 KFFYCFWWGLRNLSSLGQ 156 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGy 156 (502)
+|+.++.|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 588888888866666665
No 111
>PRK11171 hypothetical protein; Provisional
Probab=23.22 E-value=2e+02 Score=27.93 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=31.9
Q ss_pred ceeeeCCCCEEEecCC--CcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 288 KPVLYTEKSFIVREGD--PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge--~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
....++||...-.... ..+++++|++|.+.+.. ++++ ..+.+||.+-
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~--~g~~-----~~L~~GDsi~ 112 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL--EGKT-----HALSEGGYAY 112 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE--CCEE-----EEECCCCEEE
Confidence 4455777765433322 23689999999999886 3433 7899999873
No 112
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.04 E-value=2.9e+02 Score=28.45 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHH
Q 010766 166 EVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIR 227 (502)
Q Consensus 166 E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~ 227 (502)
..+..++..++..++.++++-.+...+-+...-.++.+-..+++++-+|+..-+++++.|+|
T Consensus 184 ~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~R 245 (386)
T PRK12468 184 GDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIR 245 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 33334444444444444434333333333333333333444566777777777777776666
No 113
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.01 E-value=5.6e+02 Score=23.10 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHH-HHHHHHHHhHhHHHHhhhccCchh
Q 010766 165 GEVFFAIFISISGLVLFALLIGN-MQKYL-ESTTV-RLEEMRVKRQDAEQWMSHRMLPEN 221 (502)
Q Consensus 165 ~E~~~~i~~~~~g~~~~a~ii~~-i~~i~-~~~~~-~~~~~~~~~~~i~~~m~~~~l~~~ 221 (502)
.+-++...++.+++...+|++|- +++.+ ...+. ...++..|-.+.-+-++++.+++.
T Consensus 74 lDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDps 133 (173)
T PF08566_consen 74 LDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDPS 133 (173)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 46688888889999999998873 33333 22222 334555555555555666666654
No 114
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.97 E-value=1.2e+03 Score=26.76 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=14.9
Q ss_pred HHhHHHHHHHhhhhhhhhhcccc
Q 010766 8 CQYVPRIARIYPLYNDVKRTSGI 30 (502)
Q Consensus 8 ~~~l~rllr~~rl~~~~~~~~~~ 30 (502)
+.-..|+.|++|+.+.+.....-
T Consensus 562 fl~tiK~~k~l~f~~t~~~~s~T 584 (798)
T KOG3599|consen 562 FLTTIKLWKVLRFNKTMSQFSST 584 (798)
T ss_pred HHHHHHHHHhcchhHHHHHHHHH
Confidence 33456888888877777755443
No 115
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.72 E-value=8.8e+02 Score=27.57 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhcccCC
Q 010766 139 KFFYCFWWGLRNLSSLGQ 156 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGy 156 (502)
.=..+++||+-+++-++-
T Consensus 553 eS~~tLFWsiFglv~~~~ 570 (822)
T KOG3609|consen 553 ESSKTLFWSIFGLVVLGS 570 (822)
T ss_pred HHHHHHHHHHHhcccccc
Confidence 456789999987766554
No 116
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.49 E-value=3.4e+02 Score=27.66 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHH
Q 010766 164 VGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIR 227 (502)
Q Consensus 164 ~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~ 227 (502)
....+...+..++..+..++++-.+....-+...-.++.+-..+++++-.|+..-+++++.|+|
T Consensus 182 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR 245 (359)
T PRK05702 182 ALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIR 245 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 3444445555555544444444444444333333333333344566666666666666666665
No 117
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.35 E-value=2.6e+02 Score=28.52 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHH
Q 010766 165 GEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIR 227 (502)
Q Consensus 165 ~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~ 227 (502)
...+...+..+++.++-++++-.+....-+...-.++.+-..+++++-+|+..-+++++.|+|
T Consensus 185 ~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~R 247 (358)
T PRK13109 185 PELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLR 247 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 334444455555555545444444444433333333344445577777777777777777766
No 118
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=21.14 E-value=1.2e+02 Score=24.12 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=20.5
Q ss_pred ccchhhhHhHHhhhhhchhhhhc
Q 010766 450 SLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 450 ~ip~~~iASylGi~~~~lsrir~ 472 (502)
-.+...||..+|++..+.+|++|
T Consensus 50 G~S~~eIA~~LgISrsTIyRi~R 72 (88)
T TIGR02531 50 GKTYSDIEAETGASTATISRVKR 72 (88)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 35788899999999999999886
No 119
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=21.08 E-value=3.5e+02 Score=27.41 Aligned_cols=64 Identities=5% Similarity=0.131 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHH
Q 010766 165 GEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRR 228 (502)
Q Consensus 165 ~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~ 228 (502)
...++..+..++..+..++++-.+....-+...-.++.+-..+++++-.|+..-+++++.|+|+
T Consensus 175 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~ 238 (342)
T TIGR01404 175 APIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRE 238 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 3334444444444444444443333333333233333344445677777777777777777663
No 120
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.03 E-value=3.5e+02 Score=27.58 Aligned_cols=63 Identities=10% Similarity=0.214 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHH
Q 010766 165 GEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIR 227 (502)
Q Consensus 165 ~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~ 227 (502)
...+...+..++..+..++++-.+....-+...-.++.+-..+++++-.|+..-+++++.|+|
T Consensus 171 ~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R 233 (361)
T PRK08156 171 IVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRR 233 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 333444444444444444444444344333333333334444566777777777777776666
No 121
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.77 E-value=61 Score=31.25 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=33.1
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
.+..+.+.+++ ...+.+..+|+.+|+++.+++|+=|+..+.+
T Consensus 174 ~~~~~~I~~~~--~~~~tl~~lA~~~~lS~~~l~r~Fk~~~G~S 215 (278)
T PRK13503 174 NQLLAWLEDHF--AEEVNWEALADQFSLSLRTLHRQLKQQTGLT 215 (278)
T ss_pred HHHHHHHHHhh--cCCCCHHHHHHHHCCCHHHHHHHHHHHhCcC
Confidence 34556666665 4678999999999999999999988776654
No 122
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=20.71 E-value=2e+02 Score=26.17 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhc
Q 010766 429 SLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLH 466 (502)
Q Consensus 429 ~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~ 466 (502)
....|.++|-+-...+.-.+...|...+|..+|-++..
T Consensus 133 ~Ia~aR~~YN~av~~yN~~i~~FPs~ivA~~~gf~~~~ 170 (185)
T COG1704 133 RIAVARRLYNEAVRDYNVKIRSFPSNIVAKLFGFKAKP 170 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcCc
Confidence 56677788888888898889999999999999987654
No 123
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=20.71 E-value=3.2e+02 Score=25.67 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=37.7
Q ss_pred ecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEE--EccceeEEEecH
Q 010766 300 REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ--ALTEVEAFSLMA 377 (502)
Q Consensus 300 ~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~--A~~~~~l~~i~~ 377 (502)
..++..+.+-||++|.+.+.. +|+. ..+.+|++.- +.+. +..+++ +.+++++..+.+
T Consensus 78 e~d~~ae~~lfVv~Ge~tv~~--~G~t-----h~l~eggyay-------lPpg-------s~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 78 EGDEGAETFLFVVSGEITVKA--EGKT-----HALREGGYAY-------LPPG-------SGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred CCCCcceEEEEEEeeeEEEEE--cCeE-----EEeccCCeEE-------eCCC-------CcceEeeccCCceEEEEEee
Confidence 345567889999999998876 4443 6778887641 2222 244454 777888877765
No 124
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=20.66 E-value=1.7e+02 Score=22.47 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=28.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccce
Q 010766 242 EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKP 289 (502)
Q Consensus 242 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~ 289 (502)
-.++|..||+.+|.++...+ .-+..++++.++.+...++.
T Consensus 29 AA~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 29 AAEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 35799999999998887665 34566788888887766554
No 125
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=20.66 E-value=3.6e+02 Score=27.35 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHH
Q 010766 165 GEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIR 227 (502)
Q Consensus 165 ~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~ 227 (502)
...+...+..++..+..++++-.+....-+...-.++.+-..+++++-+|+..-+++++.|+|
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR 238 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIR 238 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 344445555555554444444444444433333333344444567777777777777777766
No 126
>PHA01757 hypothetical protein
Probab=20.61 E-value=4.1e+02 Score=20.54 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=29.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010766 163 FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQ 207 (502)
Q Consensus 163 ~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~ 207 (502)
+..|-..--|+...|.+.-++++|.+..+..... +.+.|..-++
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek~-~nenf~~AvD 47 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEKQ-RNENFAKAID 47 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhHhHHHHHH
Confidence 4567777778888888888999998877764432 2233544444
No 127
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=20.52 E-value=81 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhcc
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~ 473 (502)
++...+.++|+ +.+..||..+|+++.+++|+=++
T Consensus 7 ~iL~~l~~~~~----~~~~~la~~~~~~~~~~t~~i~~ 40 (59)
T PF01047_consen 7 RILRILYENGG----ITQSELAEKLGISRSTVTRIIKR 40 (59)
T ss_dssp HHHHHHHHHSS----EEHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHcCC----CCHHHHHHHHCCChhHHHHHHHH
Confidence 34555666666 67789999999999999997443
No 128
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=20.32 E-value=1.3e+02 Score=20.05 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=22.2
Q ss_pred HHHHHHHHhhccccccccchhhhHhHHhhhhhchhh
Q 010766 434 EDRLQDALATEAGALTSLGATMYASKFAANLLHPLR 469 (502)
Q Consensus 434 ~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsr 469 (502)
..++.+.+..+ .+.|...||.-+|+++.+..+
T Consensus 5 D~~Il~~Lq~d----~r~s~~~la~~lglS~~~v~~ 36 (42)
T PF13404_consen 5 DRKILRLLQED----GRRSYAELAEELGLSESTVRR 36 (42)
T ss_dssp HHHHHHHHHH-----TTS-HHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHHHc----CCccHHHHHHHHCcCHHHHHH
Confidence 34556666666 678999999999999988764
No 129
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.32 E-value=4.7e+02 Score=32.37 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=21.2
Q ss_pred hcccCCCccccCChhhHHHHHHHHHHHHHHHH
Q 010766 151 LSSLGQNLKTSTFVGEVFFAIFISISGLVLFA 182 (502)
Q Consensus 151 ~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a 182 (502)
.+.++-|-+.+.+....+|.++..++|.++.-
T Consensus 1062 s~~~~~~p~~~~~~~~~~ffvifii~~~ff~l 1093 (1592)
T KOG2301|consen 1062 SRGVNAQPILESNLYMYLFFVIFIIIGSFFTL 1093 (1592)
T ss_pred hhccCcCCcccccccceeehhhhhhHHhhhhe
Confidence 34566666667677777777777777766553
No 130
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=20.05 E-value=84 Score=25.42 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=29.5
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCC
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSG 477 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~ 477 (502)
+...++.+++. ..++...+|..+|+++.+++|+-++..+.
T Consensus 9 ~~~~~i~~~~~--~~~~~~~lA~~~~~S~~~l~r~f~~~~g~ 48 (107)
T PRK10219 9 TLIAWIDEHID--QPLNIDVVAKKSGYSKWYLQRMFRTVTHQ 48 (107)
T ss_pred HHHHHHHHhcC--CCCCHHHHHHHHCCCHHHHHHHHHHHHCc
Confidence 44455555543 45888999999999999999987766444
Done!