Query 010766
Match_columns 502
No_of_seqs 410 out of 3102
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 4E-32 1.4E-36 255.0 15.0 203 189-405 1-203 (212)
2 2ptm_A Hyperpolarization-activ 100.0 9.2E-31 3.2E-35 243.0 22.5 191 194-399 2-192 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 2E-30 6.8E-35 241.6 20.9 189 193-397 2-190 (202)
4 3beh_A MLL3241 protein; transm 100.0 7.7E-32 2.6E-36 273.3 11.9 186 137-397 159-344 (355)
5 3dn7_A Cyclic nucleotide bindi 100.0 1.2E-27 4E-32 221.0 15.9 188 262-475 5-193 (194)
6 4ev0_A Transcription regulator 99.9 5.3E-24 1.8E-28 199.6 20.1 183 266-475 1-188 (216)
7 3dv8_A Transcriptional regulat 99.9 2.4E-23 8.3E-28 195.6 18.3 185 264-475 3-194 (220)
8 3fx3_A Cyclic nucleotide-bindi 99.9 1.1E-23 3.9E-28 200.4 14.7 188 262-476 9-204 (237)
9 3d0s_A Transcriptional regulat 99.9 1.8E-23 6.2E-28 197.7 15.3 186 263-475 5-202 (227)
10 3e97_A Transcriptional regulat 99.9 4E-23 1.4E-27 195.9 17.3 183 263-474 5-199 (231)
11 3dkw_A DNR protein; CRP-FNR, H 99.9 2.3E-23 8E-28 196.7 14.7 186 263-474 8-202 (227)
12 3iwz_A CAP-like, catabolite ac 99.9 1.3E-22 4.4E-27 192.0 18.0 187 263-475 10-212 (230)
13 2gau_A Transcriptional regulat 99.9 8.5E-23 2.9E-27 193.7 16.7 181 268-475 14-205 (232)
14 1zyb_A Transcription regulator 99.9 4.3E-23 1.5E-27 196.1 13.7 188 262-475 16-211 (232)
15 2fmy_A COOA, carbon monoxide o 99.9 6.5E-23 2.2E-27 193.0 13.3 178 264-475 4-192 (220)
16 2oz6_A Virulence factor regula 99.9 4E-22 1.4E-26 185.5 17.8 178 275-475 1-189 (207)
17 3ryp_A Catabolite gene activat 99.9 6.9E-22 2.4E-26 184.3 16.8 180 270-475 2-192 (210)
18 1o5l_A Transcriptional regulat 99.9 1.5E-22 5.1E-27 189.8 12.1 182 269-476 4-190 (213)
19 1ft9_A Carbon monoxide oxidati 99.9 2.2E-22 7.6E-27 189.7 12.8 177 265-475 1-188 (222)
20 3kcc_A Catabolite gene activat 99.9 4.9E-21 1.7E-25 185.2 16.4 177 273-475 55-242 (260)
21 3e6c_C CPRK, cyclic nucleotide 99.8 9.4E-21 3.2E-25 181.9 13.1 181 265-475 10-202 (250)
22 4f8a_A Potassium voltage-gated 99.8 6E-20 2.1E-24 163.3 15.5 144 242-398 5-148 (160)
23 3la7_A Global nitrogen regulat 99.8 7.7E-20 2.6E-24 174.8 16.4 174 277-475 30-218 (243)
24 2bgc_A PRFA; bacterial infecti 99.8 3E-19 1E-23 170.1 17.0 177 273-475 2-195 (238)
25 3gyd_A CNMP-BD protein, cyclic 99.8 6.2E-18 2.1E-22 155.0 17.7 148 242-400 13-165 (187)
26 3b02_A Transcriptional regulat 99.8 1.4E-18 4.9E-23 160.1 12.2 151 290-474 2-163 (195)
27 3mdp_A Cyclic nucleotide-bindi 99.8 5.7E-18 1.9E-22 147.2 13.9 130 263-401 5-136 (142)
28 3ocp_A PRKG1 protein; serine/t 99.8 3.3E-18 1.1E-22 148.6 11.5 131 248-393 7-137 (139)
29 3idb_B CAMP-dependent protein 99.7 6.5E-18 2.2E-22 150.7 11.9 127 255-392 29-155 (161)
30 2zcw_A TTHA1359, transcription 99.7 4.5E-18 1.5E-22 157.6 10.7 158 283-475 1-171 (202)
31 1wgp_A Probable cyclic nucleot 99.7 3.1E-18 1.1E-22 148.2 8.3 129 264-392 6-134 (137)
32 2pqq_A Putative transcriptiona 99.7 5E-17 1.7E-21 142.3 14.7 124 263-397 4-128 (149)
33 2z69_A DNR protein; beta barre 99.7 1E-16 3.5E-21 141.2 15.3 128 263-400 11-139 (154)
34 1vp6_A CNBD, cyclic-nucleotide 99.7 3.8E-16 1.3E-20 135.0 14.7 121 263-400 10-130 (138)
35 1o7f_A CAMP-dependent RAP1 gua 99.7 2.5E-17 8.7E-22 172.6 7.5 204 249-470 27-244 (469)
36 3pna_A CAMP-dependent protein 99.7 3.5E-16 1.2E-20 138.3 13.1 118 260-392 34-151 (154)
37 3shr_A CGMP-dependent protein 99.6 1.4E-15 4.6E-20 149.7 15.1 136 244-394 19-154 (299)
38 4h33_A LMO2059 protein; bilaye 99.6 4.7E-16 1.6E-20 134.5 8.3 93 139-231 43-135 (137)
39 2a9h_A Voltage-gated potassium 99.6 1.2E-15 4E-20 134.4 10.7 63 137-199 82-144 (155)
40 3vou_A ION transport 2 domain 99.6 7.4E-15 2.5E-19 129.0 15.2 87 139-225 52-148 (148)
41 2ih3_C Voltage-gated potassium 99.6 2.2E-15 7.4E-20 127.6 11.3 61 138-198 60-120 (122)
42 1orq_C Potassium channel; volt 99.6 3.1E-15 1.1E-19 141.0 13.4 57 138-194 164-220 (223)
43 4ava_A Lysine acetyltransferas 99.6 4.4E-15 1.5E-19 148.4 15.2 126 263-401 12-138 (333)
44 2d93_A RAP guanine nucleotide 99.6 2.9E-16 1E-20 135.4 5.4 124 250-388 2-127 (134)
45 3shr_A CGMP-dependent protein 99.6 4.7E-15 1.6E-19 145.8 11.5 128 260-398 153-282 (299)
46 2qcs_B CAMP-dependent protein 99.6 3.2E-14 1.1E-18 139.2 15.7 128 261-399 154-283 (291)
47 3tnp_B CAMP-dependent protein 99.6 2.3E-14 7.9E-19 147.7 15.0 126 256-392 137-262 (416)
48 2qcs_B CAMP-dependent protein 99.6 4.3E-14 1.5E-18 138.2 15.6 127 259-400 34-160 (291)
49 3of1_A CAMP-dependent protein 99.6 1.5E-14 5.2E-19 137.5 11.9 119 262-395 5-123 (246)
50 3of1_A CAMP-dependent protein 99.6 2.8E-14 9.7E-19 135.6 13.6 118 261-392 122-239 (246)
51 4din_B CAMP-dependent protein 99.5 3E-14 1E-18 145.2 11.9 129 259-397 243-372 (381)
52 4din_B CAMP-dependent protein 99.5 5.4E-14 1.9E-18 143.3 12.9 127 258-399 124-250 (381)
53 3eff_K Voltage-gated potassium 99.5 9.3E-14 3.2E-18 120.6 12.4 59 139-197 40-98 (139)
54 3tnp_B CAMP-dependent protein 99.5 1.2E-13 4.2E-18 142.2 11.8 120 263-393 266-392 (416)
55 1o7f_A CAMP-dependent RAP1 gua 99.5 2.9E-13 1E-17 141.6 12.9 122 259-394 332-455 (469)
56 2r9r_B Paddle chimera voltage 99.4 8.2E-13 2.8E-17 139.0 13.3 62 137-198 373-434 (514)
57 2q67_A Potassium channel prote 99.4 2.2E-12 7.5E-17 107.6 11.7 60 139-198 49-108 (114)
58 3cf6_E RAP guanine nucleotide 99.4 2.2E-12 7.7E-17 140.5 12.0 133 243-390 12-146 (694)
59 2k1e_A Water soluble analogue 99.3 4.2E-13 1.4E-17 110.0 4.1 60 139-198 40-99 (103)
60 4f7z_A RAP guanine nucleotide 99.3 5.1E-12 1.8E-16 144.3 14.1 136 244-392 23-161 (999)
61 3ouf_A Potassium channel prote 99.3 1.2E-11 4.1E-16 99.9 11.6 57 139-195 32-88 (97)
62 3ldc_A Calcium-gated potassium 99.3 4.5E-11 1.5E-15 93.4 10.9 54 139-192 28-81 (82)
63 4f7z_A RAP guanine nucleotide 99.2 6.5E-11 2.2E-15 135.1 14.6 114 260-387 333-448 (999)
64 3pjs_K KCSA, voltage-gated pot 99.1 4E-12 1.4E-16 113.6 -0.7 62 138-199 66-127 (166)
65 1xl4_A Inward rectifier potass 99.0 5.4E-10 1.8E-14 109.0 10.4 55 139-193 82-136 (301)
66 1p7b_A Integral membrane chann 99.0 3.4E-10 1.2E-14 111.6 8.2 57 139-195 96-152 (333)
67 3um7_A Potassium channel subfa 99.0 2.2E-09 7.6E-14 104.2 10.7 57 139-195 115-171 (309)
68 2qks_A KIR3.1-prokaryotic KIR 98.9 5.6E-09 1.9E-13 102.6 11.5 57 139-195 78-134 (321)
69 4gx0_A TRKA domain protein; me 98.8 1.8E-08 6.3E-13 107.7 11.4 54 139-192 51-105 (565)
70 3um7_A Potassium channel subfa 98.7 3.5E-08 1.2E-12 95.8 10.5 59 140-198 225-289 (309)
71 3ukm_A Potassium channel subfa 98.7 9.6E-08 3.3E-12 91.4 12.6 56 140-195 202-264 (280)
72 3sya_A G protein-activated inw 98.7 4.7E-08 1.6E-12 96.1 9.9 59 139-197 91-151 (340)
73 3ukm_A Potassium channel subfa 98.7 4.2E-08 1.4E-12 93.9 8.2 56 139-194 93-148 (280)
74 3spc_A Inward-rectifier K+ cha 98.6 1.8E-07 6.2E-12 92.0 10.4 57 139-195 94-152 (343)
75 3rvy_A ION transport protein; 98.4 3.9E-07 1.3E-11 88.6 7.5 63 136-198 177-245 (285)
76 1lnq_A MTHK channels, potassiu 98.4 2E-08 6.8E-13 100.2 -1.8 57 139-195 45-101 (336)
77 4dxw_A Navrh, ION transport pr 95.9 0.033 1.1E-06 51.5 9.7 23 137-159 163-185 (229)
78 3fjs_A Uncharacterized protein 80.7 7.7 0.00026 30.9 8.5 67 287-374 38-104 (114)
79 3rns_A Cupin 2 conserved barre 78.6 6.6 0.00023 35.7 8.3 71 286-377 38-108 (227)
80 2ozj_A Cupin 2, conserved barr 77.3 8 0.00027 30.5 7.5 65 290-375 43-107 (114)
81 1yhf_A Hypothetical protein SP 74.0 17 0.00057 28.5 8.7 68 287-375 42-109 (115)
82 2pfw_A Cupin 2, conserved barr 73.1 16 0.00055 28.6 8.4 68 287-375 36-103 (116)
83 3lwc_A Uncharacterized protein 71.4 12 0.00041 30.2 7.2 46 288-341 43-88 (119)
84 1zvf_A 3-hydroxyanthranilate 3 65.6 30 0.001 29.9 8.6 84 278-378 12-114 (176)
85 4e2g_A Cupin 2 conserved barre 63.1 28 0.00097 27.6 8.0 47 287-340 43-89 (126)
86 3kg2_A Glutamate receptor 2; I 62.3 8 0.00027 42.3 5.7 55 139-194 563-617 (823)
87 3rns_A Cupin 2 conserved barre 59.2 30 0.001 31.2 8.1 69 286-375 154-223 (227)
88 1yfu_A 3-hydroxyanthranilate-3 55.9 23 0.0008 30.6 6.2 35 304-341 54-88 (174)
89 1v70_A Probable antibiotics sy 53.3 36 0.0012 25.5 6.7 46 288-340 31-77 (105)
90 1dgw_A Canavalin; duplicated s 52.5 21 0.00071 31.0 5.6 52 287-341 43-94 (178)
91 2gu9_A Tetracenomycin polyketi 52.5 30 0.001 26.5 6.2 47 287-340 23-72 (113)
92 2bnm_A Epoxidase; oxidoreducta 52.1 33 0.0011 29.9 7.0 48 291-341 123-173 (198)
93 1o5u_A Novel thermotoga mariti 51.8 56 0.0019 25.2 7.5 47 287-341 33-79 (101)
94 1jhg_A Trp operon repressor; c 47.1 7.4 0.00025 30.6 1.6 23 450-472 58-80 (101)
95 2q30_A Uncharacterized protein 46.4 71 0.0024 24.2 7.5 68 288-375 36-105 (110)
96 3h8u_A Uncharacterized conserv 45.8 31 0.0011 27.4 5.3 48 287-340 41-89 (125)
97 2fqp_A Hypothetical protein BP 45.5 14 0.00048 28.2 3.0 49 288-341 21-70 (97)
98 3d82_A Cupin 2, conserved barr 45.4 30 0.001 26.1 5.0 51 306-377 51-101 (102)
99 3d0j_A Uncharacterized protein 42.0 44 0.0015 27.8 5.5 63 301-378 46-110 (140)
100 3ibm_A Cupin 2, conserved barr 41.8 47 0.0016 28.3 6.1 47 288-341 59-105 (167)
101 4axo_A EUTQ, ethanolamine util 41.5 53 0.0018 27.7 6.2 30 304-340 83-112 (151)
102 2qnk_A 3-hydroxyanthranilate 3 40.1 47 0.0016 31.1 6.0 59 303-378 49-107 (286)
103 2pyt_A Ethanolamine utilizatio 39.6 54 0.0019 26.8 5.9 45 289-342 61-105 (133)
104 4e2q_A Ureidoglycine aminohydr 38.7 40 0.0014 31.4 5.4 70 288-377 73-142 (266)
105 3bcw_A Uncharacterized protein 38.1 25 0.00087 28.5 3.6 45 291-342 55-99 (123)
106 1o4t_A Putative oxalate decarb 37.8 54 0.0019 26.5 5.7 46 288-340 60-106 (133)
107 4i4a_A Similar to unknown prot 37.7 1.5E+02 0.005 23.2 9.3 79 289-388 38-120 (128)
108 3mn2_A Probable ARAC family tr 37.5 18 0.00061 28.2 2.5 40 436-477 6-45 (108)
109 1sfn_A Conserved hypothetical 37.2 82 0.0028 28.6 7.4 65 289-376 54-118 (246)
110 3nw4_A Gentisate 1,2-dioxygena 36.9 69 0.0024 31.3 7.0 76 287-383 281-356 (368)
111 1lr5_A Auxin binding protein 1 36.9 38 0.0013 28.5 4.7 50 288-340 44-98 (163)
112 3oou_A LIN2118 protein; protei 36.2 12 0.00042 29.3 1.3 39 436-476 9-47 (108)
113 3oio_A Transcriptional regulat 36.1 17 0.00057 28.7 2.1 40 436-477 11-50 (113)
114 2vpv_A Protein MIF2, MIF2P; nu 36.0 37 0.0013 29.2 4.4 32 303-341 108-139 (166)
115 2i45_A Hypothetical protein; n 36.0 26 0.00088 27.0 3.2 69 292-380 35-103 (107)
116 3kgz_A Cupin 2 conserved barre 35.8 41 0.0014 28.4 4.7 43 291-340 50-92 (156)
117 3es1_A Cupin 2, conserved barr 35.6 38 0.0013 29.3 4.5 48 287-340 81-128 (172)
118 3jzv_A Uncharacterized protein 35.6 39 0.0013 28.9 4.5 45 290-341 58-102 (166)
119 2d40_A Z3393, putative gentisa 35.5 71 0.0024 31.0 7.0 71 289-380 272-342 (354)
120 3es4_A Uncharacterized protein 35.2 28 0.00096 28.0 3.3 45 291-342 48-92 (116)
121 3i7d_A Sugar phosphate isomera 35.1 48 0.0017 28.0 5.1 47 288-341 46-94 (163)
122 1y9q_A Transcriptional regulat 34.7 78 0.0027 27.3 6.6 44 290-340 109-154 (192)
123 2b8m_A Hypothetical protein MJ 34.2 40 0.0014 26.3 4.2 44 290-340 32-76 (117)
124 4b29_A Dimethylsulfoniopropion 33.8 69 0.0024 28.8 5.9 44 292-341 139-182 (217)
125 3l2h_A Putative sugar phosphat 33.8 46 0.0016 27.9 4.7 46 288-340 49-96 (162)
126 3h7j_A Bacilysin biosynthesis 33.4 73 0.0025 28.9 6.4 48 286-340 35-82 (243)
127 1vj2_A Novel manganese-contain 33.0 44 0.0015 26.7 4.3 45 289-340 52-96 (126)
128 1sfn_A Conserved hypothetical 32.5 60 0.0021 29.6 5.6 51 286-343 166-217 (246)
129 1fi2_A Oxalate oxidase, germin 32.1 95 0.0032 27.2 6.7 52 287-341 74-130 (201)
130 2o3f_A Putative HTH-type trans 31.9 15 0.00051 29.3 1.1 44 430-473 19-62 (111)
131 3cew_A Uncharacterized cupin p 31.5 68 0.0023 25.3 5.2 46 288-340 29-76 (125)
132 1uij_A Beta subunit of beta co 30.7 54 0.0018 32.7 5.2 52 286-340 50-101 (416)
133 2opk_A Hypothetical protein; p 30.0 51 0.0017 25.8 4.1 34 303-341 51-84 (112)
134 2ea7_A 7S globulin-1; beta bar 30.0 58 0.002 32.7 5.4 54 285-341 61-114 (434)
135 3bu7_A Gentisate 1,2-dioxygena 29.8 51 0.0017 32.6 4.8 75 287-382 296-373 (394)
136 1u8b_A ADA polyprotein; protei 29.6 29 0.00099 28.2 2.6 31 448-478 91-121 (133)
137 3mkl_A HTH-type transcriptiona 29.4 27 0.00093 27.8 2.3 38 435-474 10-47 (120)
138 2q1z_B Anti-sigma factor CHRR, 29.4 74 0.0025 27.9 5.4 65 286-375 126-192 (195)
139 3h7j_A Bacilysin biosynthesis 29.1 1.3E+02 0.0044 27.1 7.3 47 289-342 149-196 (243)
140 3iwf_A Transcription regulator 29.0 24 0.00083 27.8 1.9 44 429-472 14-57 (107)
141 2f4p_A Hypothetical protein TM 28.4 90 0.0031 25.7 5.6 48 288-341 51-98 (147)
142 2etd_A LEMA protein; bromodoma 28.3 58 0.002 28.1 4.4 40 428-467 117-156 (171)
143 2cav_A Protein (canavalin); vi 27.8 71 0.0024 32.2 5.6 53 286-341 87-139 (445)
144 1j58_A YVRK protein; cupin, de 27.6 96 0.0033 30.2 6.5 51 287-340 81-132 (385)
145 3bu7_A Gentisate 1,2-dioxygena 27.5 45 0.0015 33.0 3.9 49 288-342 126-174 (394)
146 1j58_A YVRK protein; cupin, de 27.4 1.2E+02 0.004 29.6 7.1 53 287-342 259-313 (385)
147 2vqa_A SLL1358 protein, MNCA; 27.0 1.1E+02 0.0038 29.4 6.8 52 287-341 54-107 (361)
148 3ht1_A REMF protein; cupin fol 26.8 52 0.0018 26.6 3.8 31 305-340 59-89 (145)
149 3lsg_A Two-component response 26.3 25 0.00086 27.0 1.5 41 435-476 5-45 (103)
150 3t76_A VANU, transcriptional r 26.1 34 0.0012 25.8 2.2 24 450-473 37-60 (88)
151 3r1f_A ESX-1 secretion-associa 25.7 53 0.0018 27.0 3.5 40 435-474 10-55 (135)
152 1sq4_A GLXB, glyoxylate-induce 25.7 1E+02 0.0036 28.6 6.0 50 285-341 191-241 (278)
153 2o1q_A Putative acetyl/propion 25.6 43 0.0015 27.8 3.0 51 287-342 46-96 (145)
154 1sef_A Conserved hypothetical 24.8 1.1E+02 0.0036 28.3 5.9 48 287-341 184-232 (274)
155 2heo_A Z-DNA binding protein 1 24.0 47 0.0016 23.5 2.5 36 434-472 12-47 (67)
156 2a6c_A Helix-turn-helix motif; 23.9 40 0.0014 24.7 2.2 24 450-473 31-54 (83)
157 3qwg_A ESX-1 secretion-associa 23.8 59 0.002 26.3 3.4 40 435-474 8-53 (123)
158 3lag_A Uncharacterized protein 23.3 27 0.00093 26.8 1.2 50 287-340 19-69 (98)
159 2l1p_A DNA-binding protein SAT 23.2 43 0.0015 25.0 2.1 34 433-473 22-55 (83)
160 2k9s_A Arabinose operon regula 22.9 29 0.00099 26.9 1.3 40 436-476 7-46 (107)
161 3pjz_A Potassium uptake protei 22.2 58 0.002 33.3 3.7 90 135-231 302-404 (494)
162 2oa2_A BH2720 protein; 1017534 21.9 1.3E+02 0.0045 24.6 5.4 51 289-340 47-98 (148)
163 1y3t_A Hypothetical protein YX 21.8 1.5E+02 0.0051 27.9 6.5 47 288-341 49-96 (337)
164 1wa7_B TIP, hypothetical 28.7 21.8 54 0.0019 18.3 1.8 12 486-497 2-13 (26)
165 3nw4_A Gentisate 1,2-dioxygena 21.8 78 0.0027 31.0 4.4 50 287-342 105-154 (368)
166 1j9i_A GPNU1 DBD;, terminase s 21.5 26 0.00088 24.9 0.7 23 451-473 3-25 (68)
167 2vqa_A SLL1358 protein, MNCA; 21.4 1.6E+02 0.0055 28.1 6.7 52 287-341 236-289 (361)
168 2qnk_A 3-hydroxyanthranilate 3 21.1 2.5E+02 0.0084 26.2 7.3 129 217-377 136-277 (286)
169 1qgp_A Protein (double strande 21.0 75 0.0026 23.2 3.2 38 432-470 14-51 (77)
170 1bl0_A Protein (multiple antib 20.6 36 0.0012 27.5 1.4 40 435-476 14-53 (129)
171 2d5f_A Glycinin A3B4 subunit; 20.5 2.1E+02 0.007 29.2 7.4 60 280-341 362-423 (493)
172 1u2w_A CADC repressor, cadmium 20.4 1.3E+02 0.0046 23.7 4.9 32 436-471 46-77 (122)
173 2qww_A Transcriptional regulat 20.3 1.2E+02 0.0041 24.6 4.8 37 432-472 41-77 (154)
174 2o8q_A Hypothetical protein; c 20.1 1.2E+02 0.0041 24.1 4.7 30 305-340 64-93 (134)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.98 E-value=4e-32 Score=255.03 Aligned_cols=203 Identities=23% Similarity=0.360 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcCChHHHHHHHHHHHHHHhcc
Q 010766 189 QKYLESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMR 268 (502)
Q Consensus 189 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 268 (502)
++|+++++++..+|+++|+.+++||+++++|.+||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999998888999999999999999999999998877 8
Q ss_pred CcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhh
Q 010766 269 VPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWA 348 (502)
Q Consensus 269 ~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~ 348 (502)
+++|.+++++++..++..++.+.|+|||+|+++|++++.+|||.+|.|+++.. |. ++..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~~----~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--NT----VLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--SC----EEEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--Ce----EEEEecCCCCcCcHHhc--
Confidence 99999999999999999999999999999999999999999999999999863 31 46999999999999874
Q ss_pred cCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 010766 349 LDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQ 405 (502)
Q Consensus 349 ~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~ 405 (502)
.+. .++++++++|.++|+++.|++++|.++++.+|++...+++...+.....
T Consensus 152 -~~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~ 203 (212)
T 3ukn_A 152 -KEQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYN 203 (212)
T ss_dssp -SSS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEE
T ss_pred -cCC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccc
Confidence 322 0025899999999999999999999999999999987777766654443
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=9.2e-31 Score=243.03 Aligned_cols=191 Identities=23% Similarity=0.426 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcCChHHHHHHHHHHHHHHhccCcCcc
Q 010766 194 STTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFE 273 (502)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~ 273 (502)
+++++..+|+++++.+++||+.+++|.++|.||++||+|.|+. ++.+++++++.||++||.++..+++.++++++++|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 4678889999999999999999999999999999999999985 788899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCC
Q 010766 274 KMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQS 353 (502)
Q Consensus 274 ~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~ 353 (502)
+++++++..++..++.+.|+|||+|+++|++++.+|||.+|.|+++. .+|+ .+..+++|++||+.+++ .+.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~----~~~~l~~G~~fGe~~~~---~~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV----IATSLSDGSYFGEICLL---TRER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC----EEEEECTTCEESCHHHH---HSSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe----EEEEecCCCEechHHHc---CCCc
Confidence 99999999999999999999999999999999999999999999997 3444 35899999999999885 2332
Q ss_pred CCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010766 354 SSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 399 (502)
Q Consensus 354 ~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~ 399 (502)
++++++|.++|+++.|++++|.++++++|++...+.+.+.
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAV 192 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 4899999999999999999999999999998875555443
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=2e-30 Score=241.60 Aligned_cols=189 Identities=25% Similarity=0.430 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHhhhccCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcCChHHHHHHHHHHHHHHhccCcCc
Q 010766 193 ESTTVRLEEMRVKRQDAEQWMSHRMLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMF 272 (502)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F 272 (502)
+++++...+|+++++.+++||+.+++|.++|.||++||+|.|+. ++.+++++++.||+.||.++..+.+.++++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 35678889999999999999999999999999999999999985 78899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCC
Q 010766 273 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQ 352 (502)
Q Consensus 273 ~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~ 352 (502)
.+++++++..++..++.+.|+|||+|+++|++++.+|||.+|.|+++. .+|++ ..+++|++||+.+++ .+.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~---~~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLL---TRG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHH---HCS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHh---cCC
Confidence 999999999999999999999999999999999999999999999986 34544 468999999999885 233
Q ss_pred CCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHH
Q 010766 353 SSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 397 (502)
Q Consensus 353 ~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~ 397 (502)
+ ++++++|.++|+++.|++++|.++++++|++...+.+.
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 2 48899999999999999999999999999887644433
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=7.7e-32 Score=273.27 Aligned_cols=186 Identities=24% Similarity=0.377 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhc
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHR 216 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~ 216 (502)
+..|..|+||+++|||||||||+.|.|..++++++++|++|.+++++.+|.+++.+.+...+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 44699999999999999999999999999999999999999999999999998776532110
Q ss_pred cCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCC
Q 010766 217 MLPENLRDRIRRYEQYKWQETRGVEEEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKS 296 (502)
Q Consensus 217 ~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge 296 (502)
+++. ...+.++++++|+++++++++.+...++.+.++|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0000 023677888999999999999999999999999999
Q ss_pred EEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEec
Q 010766 297 FIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLM 376 (502)
Q Consensus 297 ~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~ 376 (502)
.|+++||+++++|||.+|.|+++..+ + ..+++|++||+.+++ .+.+ ++++++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~~~------~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SGEP------RSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CCCC------cceEEEECccEEEEEEe
Confidence 99999999999999999999998654 2 578999999999874 3433 48899999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 010766 377 ADDLKSVASQFRRLHSKQLQH 397 (502)
Q Consensus 377 ~~~f~~ll~~~P~~~~~~l~~ 397 (502)
+++|.++++++|++...+.+.
T Consensus 324 ~~~f~~ll~~~p~~~~~l~~~ 344 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIFRKT 344 (355)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHH
Confidence 999999999999988754443
No 5
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.95 E-value=1.2e-27 Score=220.98 Aligned_cols=188 Identities=11% Similarity=0.083 Sum_probs=121.1
Q ss_pred HHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCee
Q 010766 262 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 262 ~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~f 340 (502)
+..+++.++.|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++. ..+|++.+ +.++++|++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 35677889999999999999999999999999999999999999999999999999996 45677765 5999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 010766 341 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 420 (502)
Q Consensus 341 Ge~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~ 420 (502)
|+...+ .++.+ +.++++|+++|+++.|++++|.++++++|++...+++ .+......
T Consensus 83 ge~~~~--~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~----------------~~~~~l~~ 138 (194)
T 3dn7_A 83 SDYMAF--QKQQP------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRL----------------VYQKSFAA 138 (194)
T ss_dssp CCHHHH--HHTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHH----------------HHHHHHHH
T ss_pred eehHHH--hcCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHH----------------HHHHHHHH
Confidence 988543 33332 4889999999999999999999999999988763333 33344455
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 421 HSKKKLAQSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 421 ~~~r~~~~~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
..++.......++++||..++.+.|++..++|+.+||+|||++++++||++|+..
T Consensus 139 ~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 139 AQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp HHHHHHHHHHC--------------------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 6777788899999999999999999999999999999999999999999999764
No 6
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.92 E-value=5.3e-24 Score=199.56 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=153.8
Q ss_pred hccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhh
Q 010766 266 LMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEAL 344 (502)
Q Consensus 266 l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~ 344 (502)
++++++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999964 5677654 59999999999998
Q ss_pred hhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhh
Q 010766 345 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKK 424 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r 424 (502)
++ .+.+ +.++++|.++|+++.|++++|.++++++|++...+++.... ......++
T Consensus 79 ~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~~~~~~~~ 133 (216)
T 4ev0_A 79 LL---DEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR----------------RLREADLE 133 (216)
T ss_dssp HH---HCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHH
T ss_pred hc---CCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH----------------HHHHHHHH
Confidence 74 3332 48899999999999999999999999999988754444332 33445666
Q ss_pred HHHHHHHHHHHHHHHHHh----hccccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 425 KLAQSLQEAEDRLQDALA----TEAGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 425 ~~~~~~~~a~ery~~ll~----~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
.......++++|+..++. +.+.+..++++.+||+|+|++++++||+.++..
T Consensus 134 ~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 188 (216)
T 4ev0_A 134 LDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALA 188 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 677788899999999885 356778899999999999999999999977543
No 7
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.91 E-value=2.4e-23 Score=195.64 Aligned_cols=185 Identities=11% Similarity=0.073 Sum_probs=154.5
Q ss_pred HHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCe--e
Q 010766 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDF--C 340 (502)
Q Consensus 264 ~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~--f 340 (502)
++++++++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++. ..+|++.+ +..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 578899999999999999999999999999999999999999999999999999996 45677754 599999999 7
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 010766 341 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 420 (502)
Q Consensus 341 Ge~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~ 420 (502)
|+.++ +.+.+ +.++++|+++|+++.|++++|.+++.++|++...+++.... ....
T Consensus 81 g~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~ 135 (220)
T 3dv8_A 81 SASCI---MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT----------------RFSD 135 (220)
T ss_dssp GGGGG---CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
T ss_pred hHHHH---hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
Confidence 88887 34443 48899999999999999999999999999988754444332 2333
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhcccc----ccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 421 HSKKKLAQSLQEAEDRLQDALATEAGA----LTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 421 ~~~r~~~~~~~~a~ery~~ll~~~p~~----~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
..++.......++++|+..++...++. ..++++.+||+|+|++++++||+.++..
T Consensus 136 ~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 194 (220)
T 3dv8_A 136 VMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQ 194 (220)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 455566677889999999998877653 4578999999999999999999977643
No 8
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.90 E-value=1.1e-23 Score=200.41 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=156.1
Q ss_pred HHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCee
Q 010766 262 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 262 ~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~f 340 (502)
..++++++++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++. ..+|++.+ +.++++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 45789999999999999999999999999999999999999999999999999999996 45677754 5999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 010766 341 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRR 420 (502)
Q Consensus 341 Ge~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~ 420 (502)
|+.+++ .+.+ +.++++|+++|+++.|++++|.++++++|++...+++...+ ....
T Consensus 87 G~~~~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~ 141 (237)
T 3fx3_A 87 GEAVAL---RNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG----------------HLHS 141 (237)
T ss_dssp CHHHHH---HTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
T ss_pred chHHHh---cCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHH
Confidence 999985 2332 48899999999999999999999999999988755444332 2333
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhc-----cccccccc--hhhhHhHHhhhhhchhhhhccCCC
Q 010766 421 HSKKKLAQSLQEAEDRLQDALATE-----AGALTSLG--ATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 421 ~~~r~~~~~~~~a~ery~~ll~~~-----p~~~~~ip--~~~iASylGi~~~~lsrir~~~~~ 476 (502)
..++.......++++|+..++.+. ++...++| +.+||+|+|++++++||+.++..+
T Consensus 142 ~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 142 LVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455556667788999999998875 34455666 889999999999999999776543
No 9
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.90 E-value=1.8e-23 Score=197.70 Aligned_cols=186 Identities=19% Similarity=0.278 Sum_probs=156.1
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeec
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fG 341 (502)
.++++++++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 45789999999999999999999999999999999999999999999999999999964 4677654 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRH 421 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~ 421 (502)
+.+++ .+.+ +.++++|+++|+++.|++++|.++++++|++...+++.... .....
T Consensus 83 ~~~~~---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~ 137 (227)
T 3d0s_A 83 ELSIF---DPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR----------------RLRRT 137 (227)
T ss_dssp CHHHH---SCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH----------------HHHHH
T ss_pred eHHHc---CCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHH
Confidence 99874 3333 48899999999999999999999999999988755544332 23345
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhc-----------cccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 422 SKKKLAQSLQEAEDRLQDALATE-----------AGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 422 ~~r~~~~~~~~a~ery~~ll~~~-----------p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
.++.......++++|+..++... +.+...+++.+||+++|++++++||+.++..
T Consensus 138 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 138 NNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55666677888999998877642 3466789999999999999999999977543
No 10
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.90 E-value=4e-23 Score=195.87 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=150.6
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeec
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fG 341 (502)
.++++++++|.+++++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 46788999999999999999999999999999999999999999999999999999964 4677654 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRH 421 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~ 421 (502)
+.+++ .+.+ +.++++|+++|+++.|++++|.++++++|++...+++...+.. ...
T Consensus 83 ~~~~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----------------~~~ 137 (231)
T 3e97_A 83 ETAVL---AHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRV----------------TFL 137 (231)
T ss_dssp TTTTT---CCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHH
T ss_pred eHHHh---CCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHH
Confidence 99874 3343 4899999999999999999999999999998875555543321 112
Q ss_pred HhhHHHHHHHHHH-HHHHHHHhhcc----------ccccccchhhhHhHHhhhhhchhhhhccC
Q 010766 422 SKKKLAQSLQEAE-DRLQDALATEA----------GALTSLGATMYASKFAANLLHPLRLRQNG 474 (502)
Q Consensus 422 ~~r~~~~~~~~a~-ery~~ll~~~p----------~~~~~ip~~~iASylGi~~~~lsrir~~~ 474 (502)
.++.. ...+++ +|+..++.+.+ .+..++++.+||+|+|++++++||+.++.
T Consensus 138 ~~~~~--~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L 199 (231)
T 3e97_A 138 NDELI--AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRL 199 (231)
T ss_dssp HHHHH--HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHH--HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 22222 456777 88888887765 36678899999999999999999997654
No 11
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.90 E-value=2.3e-23 Score=196.73 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=155.0
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeec
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fG 341 (502)
.++++++++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++. ..+|++.+ +.++++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 4678999999999999999999999999999999999999999999999999999985 44566654 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRH 421 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~ 421 (502)
+.+++ .+.+ .+.++++|.++|+++.|++++|.++++++|++...+++.... .....
T Consensus 86 ~~~~~---~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~ 141 (227)
T 3dkw_A 86 EAMMF---MDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST----------------RLHQR 141 (227)
T ss_dssp CTTTT---TTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH----------------HHHHH
T ss_pred eHHhc---CCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHH
Confidence 99873 3332 148899999999999999999999999999988754444332 22334
Q ss_pred HhhHHHHHHHHHHHHHHHHHhh-ccc-------cccccchhhhHhHHhhhhhchhhhhccC
Q 010766 422 SKKKLAQSLQEAEDRLQDALAT-EAG-------ALTSLGATMYASKFAANLLHPLRLRQNG 474 (502)
Q Consensus 422 ~~r~~~~~~~~a~ery~~ll~~-~p~-------~~~~ip~~~iASylGi~~~~lsrir~~~ 474 (502)
.++.......++++|+..++.+ .+. +...+++.+||+|+|++++++||+.++.
T Consensus 142 ~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l 202 (227)
T 3dkw_A 142 IDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRL 202 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4555667788999999987643 443 6778999999999999999999997653
No 12
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.3e-22 Score=192.03 Aligned_cols=187 Identities=14% Similarity=0.174 Sum_probs=145.9
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeec
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fG 341 (502)
...++..++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++. ..+|++.+ +.++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 4567889999999999999999999999999999999999999999999999999995 45677754 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHh-----HHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQF-----RRLHSKQLQHAFRFHSVQWRTWAACFIQA 416 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~-----P~~~~~~l~~~~~~~~~~~~~~~~~~~q~ 416 (502)
+.+++ .+.. ++.++++|.++|+++.|++++|.++++++ |++...+++....
T Consensus 88 ~~~~~--~~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~---------------- 143 (230)
T 3iwz_A 88 EMGLF--IESD------TREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK---------------- 143 (230)
T ss_dssp CGGGT--SCCS------BCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH----------------
T ss_pred ehhhh--cCCC------CceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH----------------
Confidence 99985 2222 24889999999999999999999999999 9887654444332
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhcc----------ccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 417 AWRRHSKKKLAQSLQEAEDRLQDALATEA----------GALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 417 ~~~~~~~r~~~~~~~~a~ery~~ll~~~p----------~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
......++.......++++|+..++.... +....+++.+||+|+|++++++||+.++..
T Consensus 144 ~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 144 RLLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 23445566677788899999999877532 245678999999999999999999976543
No 13
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.89 E-value=8.5e-23 Score=193.72 Aligned_cols=181 Identities=12% Similarity=0.176 Sum_probs=149.6
Q ss_pred cCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhh
Q 010766 268 RVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLT 346 (502)
Q Consensus 268 ~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~ 346 (502)
.+++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 568899999999999999999999999999999999999999999999999953 4566654 5999999999999874
Q ss_pred hhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHH
Q 010766 347 WALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKL 426 (502)
Q Consensus 347 ~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~ 426 (502)
.+.+ +.++++|+++|+++.|++++|.++++++|++...+++...+ ......++..
T Consensus 92 ---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~~~ 146 (232)
T 2gau_A 92 ---AEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK----------------ELGYAERRTV 146 (232)
T ss_dssp ---HTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred ---CCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 2332 48899999999999999999999999999988755544333 3334555666
Q ss_pred HHHHHHHHHHHHHHHhh----c------cccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 427 AQSLQEAEDRLQDALAT----E------AGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 427 ~~~~~~a~ery~~ll~~----~------p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
.....++++|+..++.+ + +.+..++++.+||+|+|++++++||+.++..
T Consensus 147 ~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 147 TLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFV 205 (232)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 67788899999988732 2 4567889999999999999999999977653
No 14
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.89 E-value=4.3e-23 Score=196.11 Aligned_cols=188 Identities=11% Similarity=0.124 Sum_probs=156.2
Q ss_pred HHHHhccCcCccCCCHHHHHHHHhc--cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCC
Q 010766 262 CWDLLMRVPMFEKMDDQLLDAMCDH--LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGD 338 (502)
Q Consensus 262 ~~~~l~~~~~F~~ls~~~l~~l~~~--~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~ 338 (502)
....+.++++|.+++++.++.+... ++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +.++++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 4567899999999999999999998 9999999999999999999999999999999985 45666654 59999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 010766 339 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAW 418 (502)
Q Consensus 339 ~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~ 418 (502)
+||+.+++ .+.+ ++.++++|+++|+++.|++++|.++++++|++...+++.... ..
T Consensus 94 ~fG~~~~~---~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~l 149 (232)
T 1zyb_A 94 LIEPQSLF---GMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN----------------RA 149 (232)
T ss_dssp EECGGGGS---SSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH----------------HH
T ss_pred eeeehHHh---CCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH----------------HH
Confidence 99999984 3332 148899999999999999999999999999988755444332 22
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhc---c--ccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 419 RRHSKKKLAQSLQEAEDRLQDALATE---A--GALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 419 ~~~~~r~~~~~~~~a~ery~~ll~~~---p--~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
....++.......++++|+..++... + .+..++++.+||+|+|++++++||+.++..
T Consensus 150 ~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~ 211 (232)
T 1zyb_A 150 QNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQ 211 (232)
T ss_dssp HHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHH
Confidence 33444445556778999999988764 3 366789999999999999999999977653
No 15
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.89 E-value=6.5e-23 Score=192.98 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=153.2
Q ss_pred HHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechh
Q 010766 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 343 (502)
Q Consensus 264 ~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~ 343 (502)
.+++++++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++...+|++.+ +.++++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46788999999999999999999999999999999999999999999999999997666777764 599999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 010766 344 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSK 423 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 423 (502)
+ +.++++|+++|+++.|++++|.++++++|++...+++...+ ......+
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~----------------~~~~~~~ 129 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD----------------LLKNSLT 129 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----------------HHHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHH
Confidence 1 38899999999999999999999999999988755444332 3344566
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc-----------cccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 424 KKLAQSLQEAEDRLQDALATEAG-----------ALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 424 r~~~~~~~~a~ery~~ll~~~p~-----------~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
+.......++++|+..++...++ +...+++.+||+++|++++++||+.++..
T Consensus 130 ~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 130 IINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66777888999999998877653 56789999999999999999999977653
No 16
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.89 E-value=4e-22 Score=185.46 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=143.0
Q ss_pred CCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhhhcCCCC
Q 010766 275 MDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQS 353 (502)
Q Consensus 275 ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~ 353 (502)
++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+.+++ .+..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh---cCCC
Confidence 58899999999999999999999999999999999999999999964 4577754 5999999999999874 3220
Q ss_pred CCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 010766 354 SSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEA 433 (502)
Q Consensus 354 ~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a 433 (502)
. .+++.++++|+++|+++.|++++|.++++++|++...+++.... ......++.......++
T Consensus 76 ~--~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~~~~~~~~~~~l~~~~~ 137 (207)
T 2oz6_A 76 S--EQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD----------------RLRKTTRKVGDLAFLDV 137 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCH
T ss_pred C--CCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCCH
Confidence 0 00248899999999999999999999999999988755444332 22334555666778889
Q ss_pred HHHHHHHHhh---cc------c-cccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 434 EDRLQDALAT---EA------G-ALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 434 ~ery~~ll~~---~p------~-~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
++|+..++.. .+ + +..++++.+||+|||++++++||++++..
T Consensus 138 ~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 138 TGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLE 189 (207)
T ss_dssp HHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999887643 22 2 55689999999999999999999977654
No 17
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.88 E-value=6.9e-22 Score=184.27 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=144.5
Q ss_pred cCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhhh
Q 010766 270 PMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWA 348 (502)
Q Consensus 270 ~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~ 348 (502)
.+++.++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh--
Confidence 3567799999999999999999999999999999999999999999999964 5677754 5999999999999985
Q ss_pred cCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHH
Q 010766 349 LDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQ 428 (502)
Q Consensus 349 ~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~ 428 (502)
.+. +++.++++|+++|+++.|++++|.++++++|++...+++.... ......++....
T Consensus 78 -~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~~~~~ 135 (210)
T 3ryp_A 78 -EEG-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----------------RLQVTSEKVGNL 135 (210)
T ss_dssp -STT-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----------------HHHHHHHHHHHH
T ss_pred -cCC-----CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHHHHHHH
Confidence 222 1248899999999999999999999999999988755444332 233355556667
Q ss_pred HHHHHHHHHHHHHhhc---------c-ccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 429 SLQEAEDRLQDALATE---------A-GALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 429 ~~~~a~ery~~ll~~~---------p-~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
...++++|+..++... | .+...+++.+||+|+|++++++||+.++..
T Consensus 136 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 136 AFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLE 192 (210)
T ss_dssp HHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 7888999999887643 2 234578999999999999999999977543
No 18
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.88 E-value=1.5e-22 Score=189.77 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=106.1
Q ss_pred CcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhh
Q 010766 269 VPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTW 347 (502)
Q Consensus 269 ~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~ 347 (502)
-|.|.+.++.....+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +.++++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 36778888999999999999999999999999999999999999999999964 5677754 5999999999999974
Q ss_pred hcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHH
Q 010766 348 ALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLA 427 (502)
Q Consensus 348 ~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~ 427 (502)
.+..+ +.++++|+++|+++.|++++|.++++++|++...+++..... .....++...
T Consensus 81 -~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~----------------~~~~~~~~~~ 137 (213)
T 1o5l_A 81 -SSEPR------FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH----------------FRVVSEKLFF 137 (213)
T ss_dssp -SSSCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred -cCCCC------ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 22212 488999999999999999999999999999887555443331 2234566667
Q ss_pred HHHHHHHHHHHHHHhhcc----ccccccchhhhHhHHhhhhhchhhhhccCCC
Q 010766 428 QSLQEAEDRLQDALATEA----GALTSLGATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 428 ~~~~~a~ery~~ll~~~p----~~~~~ip~~~iASylGi~~~~lsrir~~~~~ 476 (502)
....++++|+..++.+.+ .+...+++.+||+++|++++++||+.++..+
T Consensus 138 l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 138 LTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp HHCC-------------------------------------------------
T ss_pred HhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 788899999999998887 5777899999999999999999999887644
No 19
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.88 E-value=2.2e-22 Score=189.68 Aligned_cols=177 Identities=11% Similarity=0.018 Sum_probs=150.9
Q ss_pred HhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhh
Q 010766 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEAL 344 (502)
Q Consensus 265 ~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~ 344 (502)
+++++++|.+++++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++...+|++.+ +..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678899999999999999999999999999999999999999999999999998666777764 59999999999
Q ss_pred hhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhh
Q 010766 345 LTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKK 424 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r 424 (502)
. ++.++++|+++|+++.|++++|.++++++|++...+++.... ......++
T Consensus 76 -------~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~ 126 (222)
T 1ft9_A 76 -------M------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR----------------ALTSCMRT 126 (222)
T ss_dssp -------S------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH----------------HHHHHHHH
T ss_pred -------C------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHHH
Confidence 1 148899999999999999999999999999887754444332 33445666
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-----------ccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 425 KLAQSLQEAEDRLQDALATEA-----------GALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 425 ~~~~~~~~a~ery~~ll~~~p-----------~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
.......++++|+..++.+.+ .+...+++.+||+++|++++++||+.++..
T Consensus 127 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~ 188 (222)
T 1ft9_A 127 IEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLI 188 (222)
T ss_dssp HHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 677788999999999998765 356679999999999999999999976543
No 20
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.86 E-value=4.9e-21 Score=185.17 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=142.3
Q ss_pred cCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhhhcCC
Q 010766 273 EKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDP 351 (502)
Q Consensus 273 ~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~ 351 (502)
..++++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+.+++ .+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---ST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---CC
Confidence 5589999999999999999999999999999999999999999999964 5677754 5999999999999985 22
Q ss_pred CCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 010766 352 QSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQ 431 (502)
Q Consensus 352 ~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~ 431 (502)
. +++.++++|+++|+++.|++++|.++++++|++...+++.... ......++.......
T Consensus 130 ~-----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~----------------~l~~~~~~~~~l~~~ 188 (260)
T 3kcc_A 130 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----------------RLQVTSEKVGNLAFL 188 (260)
T ss_dssp T-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----------------HHHHHHHHHHHHHHC
T ss_pred C-----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHHhcC
Confidence 2 1248899999999999999999999999999988755444332 233455566677788
Q ss_pred HHHHHHHHHHhhc---c-------ccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 432 EAEDRLQDALATE---A-------GALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 432 ~a~ery~~ll~~~---p-------~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
++++|+..++... + ++..++++..||+|+|++++++||+.++..
T Consensus 189 ~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~ 242 (260)
T 3kcc_A 189 LVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLE 242 (260)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8999998876542 2 244578999999999999999999977543
No 21
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.84 E-value=9.4e-21 Score=181.92 Aligned_cols=181 Identities=9% Similarity=0.061 Sum_probs=147.6
Q ss_pred HhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechh
Q 010766 265 LLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEA 343 (502)
Q Consensus 265 ~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~ 343 (502)
++.++..+..++++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 445555558899999999999999999999999999999999999999999999964 5677754 599999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 010766 344 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSK 423 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 423 (502)
+ +.+. + .++++|+++|+++.|++++|.+++.++|++...+++.... ......+
T Consensus 87 -~---l~~~-~------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~l~~~~~ 139 (250)
T 3e6c_C 87 -L---YPTG-N------NIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT----------------KVAYYAR 139 (250)
T ss_dssp -C---SCCS-C------CEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH----------------HHHHHHH
T ss_pred -e---cCCC-C------ceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHH
Confidence 4 2332 2 8899999999999999999999999999988755444333 2333455
Q ss_pred hHHHHHHHHHHHHHHHHHhh----cc-------ccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 424 KKLAQSLQEAEDRLQDALAT----EA-------GALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 424 r~~~~~~~~a~ery~~ll~~----~p-------~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
+.......++++|+..++.. ++ .+...+++..||+++|++++++||+.++..
T Consensus 140 ~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~ 202 (250)
T 3e6c_C 140 QVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLK 202 (250)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55666778899999887743 22 246789999999999999999999976543
No 22
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.83 E-value=6e-20 Score=163.32 Aligned_cols=144 Identities=24% Similarity=0.353 Sum_probs=120.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe
Q 010766 242 EEGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 321 (502)
Q Consensus 242 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~ 321 (502)
.+++++.||++||.++..+++.++++++++|.+++++.++.+...++.+.|++|++|+++|++++++|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 010766 322 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 398 (502)
Q Consensus 322 ~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~ 398 (502)
+ . .+..+++|++||+.+++ .+. ..++.++++|.++|+++.|++++|.++++++|++...+++..
T Consensus 85 ~--~----~~~~~~~G~~fG~~~~~---~~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 D--E----VVAILGKGDVFGDVFWK---EAT----LAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp T--E----EEEEEETTCEEECCTTT---CSS----CCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred C--E----EEEEecCCCEeCcHHHh---cCc----ccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 46999999999999874 221 012589999999999999999999999999999988665554
No 23
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.83 E-value=7.7e-20 Score=174.84 Aligned_cols=174 Identities=16% Similarity=0.107 Sum_probs=139.0
Q ss_pred HHHHHHHHhccc---eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhcCCC
Q 010766 277 DQLLDAMCDHLK---PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQ 352 (502)
Q Consensus 277 ~~~l~~l~~~~~---~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~ 352 (502)
++.++.+..... .+.|++|++|+.+|++++.+|||.+|.|+++. ..+|++.+ +.++++|++||+.+++ .+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 677888888888 99999999999999999999999999999996 45677754 5999999999999874 322
Q ss_pred CCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q 010766 353 SSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQE 432 (502)
Q Consensus 353 ~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~ 432 (502)
+. ++.++++|+++|+++.|++++|.++++++|++...+++.... ......++.......+
T Consensus 105 ~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~l~~~~~~~~~l~~~~ 164 (243)
T 3la7_A 105 KS----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS----------------RILQTEMMIETLAHRD 164 (243)
T ss_dssp CS----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHHHHHHHHHHCSS
T ss_pred CC----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCC
Confidence 10 125899999999999999999999999999988755444332 2223444555666778
Q ss_pred HHHHHHHHHhhc-----------cccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 433 AEDRLQDALATE-----------AGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 433 a~ery~~ll~~~-----------p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
+++|+..++... +.+...+++..||+++|++++++||+.++..
T Consensus 165 ~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~ 218 (243)
T 3la7_A 165 MGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLR 218 (243)
T ss_dssp HHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 888988877653 2456789999999999999999999976543
No 24
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.81 E-value=3e-19 Score=170.10 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=137.7
Q ss_pred cCCCHHHHHHHHh--ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhc
Q 010766 273 EKMDDQLLDAMCD--HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWAL 349 (502)
Q Consensus 273 ~~ls~~~l~~l~~--~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~ 349 (502)
++++++.+..+.. .++.+.|++|++|+++|++++++|||.+|.|+++. ..+|++.+ +.++ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3678899998885 59999999999999999999999999999999996 45677755 4788 99999999874
Q ss_pred CCCCCCCCCCcccEEEEc-cceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHH
Q 010766 350 DPQSSSNRPLSTRTVQAL-TEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQ 428 (502)
Q Consensus 350 ~~~~~~~~~~~~~~v~A~-~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~ 428 (502)
.+.+ +++..++.|+ ++|+++.|++++|.+++.++|++...+++.... ......++....
T Consensus 76 ~~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~~~~~ 135 (238)
T 2bgc_A 76 DTET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK----------------QVSYSLAKFNDF 135 (238)
T ss_dssp TTCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHH
T ss_pred cCCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHHHHHH
Confidence 3221 0014677788 599999999999999999999988755554433 223345555667
Q ss_pred HHHHHHHHHHHHHhh--------cc---cccc-ccchhhhHhHHhhhh-hchhhhhccCC
Q 010766 429 SLQEAEDRLQDALAT--------EA---GALT-SLGATMYASKFAANL-LHPLRLRQNGS 475 (502)
Q Consensus 429 ~~~~a~ery~~ll~~--------~p---~~~~-~ip~~~iASylGi~~-~~lsrir~~~~ 475 (502)
...++++|+..++.. .| .+.. .+++.+||+++|+++ +++||+.++..
T Consensus 136 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~ 195 (238)
T 2bgc_A 136 SINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLK 195 (238)
T ss_dssp HTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 778899999988754 12 2344 789999999999999 89999977653
No 25
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.78 E-value=6.2e-18 Score=154.98 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=124.6
Q ss_pred HHHHHhcCChHH----HHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEE
Q 010766 242 EEGLLRNLPKDL----RRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLV 317 (502)
Q Consensus 242 ~~~il~~Lp~~L----r~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~ 317 (502)
+....+.++|++ +.+...+...++++++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 455566666554 3445556668899999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-cCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHH
Q 010766 318 STTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQ 396 (502)
Q Consensus 318 ~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~ 396 (502)
++.. .+|++.+ +..+++|++||+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|++...+++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI---DGMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH---HCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh---CCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 9964 4677654 5999999999999974 3333 4889999999999999999999999999999876655
Q ss_pred HHHh
Q 010766 397 HAFR 400 (502)
Q Consensus 397 ~~~~ 400 (502)
...+
T Consensus 162 ~l~~ 165 (187)
T 3gyd_A 162 RLLQ 165 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 26
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.77 E-value=1.4e-18 Score=160.12 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=120.9
Q ss_pred eeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 010766 290 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 368 (502)
Q Consensus 290 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~ 368 (502)
+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+ +++ .+.+ +.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---EGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---TCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---CCCC------ceeEEEECC
Confidence 67999999999999999999999999999964 4666654 599999999999 773 4433 488999999
Q ss_pred ceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh----c
Q 010766 369 EVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALAT----E 444 (502)
Q Consensus 369 ~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ll~~----~ 444 (502)
+|+++.|++++|. |++...+++.... ......++.......++++|+..++.+ +
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~----------------~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~ 127 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLAR----------------QMRRVQAYEAHLQTGELRARIARYLLFLADTP 127 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTST
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 9999999999998 8776644443322 233455556667788899999988765 2
Q ss_pred cc------cccccchhhhHhHHhhhhhchhhhhccC
Q 010766 445 AG------ALTSLGATMYASKFAANLLHPLRLRQNG 474 (502)
Q Consensus 445 p~------~~~~ip~~~iASylGi~~~~lsrir~~~ 474 (502)
+. +...+++.+||+++|++++++||+.++.
T Consensus 128 ~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L 163 (195)
T 3b02_A 128 LSARDRQGIYVTVSHEEIADATASIRESVSKVLADL 163 (195)
T ss_dssp TEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 22 4567899999999999999999997754
No 27
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=5.7e-18 Score=147.21 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=108.1
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEE-ecCceeee-eEeEEeCCCCee
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTT-TYGGRTGF-FNAVYLKAGDFC 340 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~-~~~~~e~~-~~i~~l~~G~~f 340 (502)
.+.++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ .++..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 3578899999999999999999999999999999999999999999999999999995 34555543 015899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhh
Q 010766 341 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRF 401 (502)
Q Consensus 341 Ge~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~ 401 (502)
|+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|++...+++...+.
T Consensus 85 G~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 136 (142)
T 3mdp_A 85 GVSSLI---KPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAA 136 (142)
T ss_dssp CGGGSS---TTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHHc---CCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 999873 4443 488999999999999999999999999999998666665543
No 28
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.76 E-value=3.3e-18 Score=148.60 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=113.1
Q ss_pred cCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceee
Q 010766 248 NLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTG 327 (502)
Q Consensus 248 ~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~ 327 (502)
.+|..+|.+...+...++++++++|.+++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6788889999999999999999999999999999999999999999999999999999999999999999965 343
Q ss_pred eeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHH
Q 010766 328 FFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSK 393 (502)
Q Consensus 328 ~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~ 393 (502)
.+..+++|++||+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|.++++
T Consensus 83 --~~~~~~~G~~fGe~~~l---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp --EEEEECTTCEESCHHHH---HCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred --EEEEeCCCCEeccHHHH---CCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 36999999999999975 2332 4889999999999999999999999999988763
No 29
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.74 E-value=6.5e-18 Score=150.65 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEe
Q 010766 255 RDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYL 334 (502)
Q Consensus 255 ~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l 334 (502)
.+-......++++++++|.+++++.+..++..++.+.|++|++|+++|++++++|||.+|.|+++...+|++.+ +..+
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~ 106 (161)
T 3idb_B 29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNY 106 (161)
T ss_dssp CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEE
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEc
Confidence 34445566789999999999999999999999999999999999999999999999999999999877777764 5999
Q ss_pred CCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 335 KAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 335 ~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
++|++||+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|.+++
T Consensus 107 ~~G~~fGe~~~~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 107 DNRGSFGELALM---YNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp ESCCEECGGGGT---CCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred CCCCEechHHHH---cCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999999984 3443 488999999999999999999999999998764
No 30
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.74 E-value=4.5e-18 Score=157.63 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=122.2
Q ss_pred HHhccceeeeCCCCEEEecCCCc--CeEEEEEeeEEEEEE-ecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCC
Q 010766 283 MCDHLKPVLYTEKSFIVREGDPV--EEMLFVMRGNLVSTT-TYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPL 359 (502)
Q Consensus 283 l~~~~~~~~~~~ge~I~~~Ge~~--~~lyfI~~G~v~~~~-~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~ 359 (502)
+...++.+.|++|++|+++|+++ +++|||.+|.|+++. ..+|++.+ +.++++|++||+ +++ .+.+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l---~~~~------ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EAL---FGQE------ 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHH---HTCC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhc---CCCC------
Confidence 34668899999999999999999 999999999999996 45677754 599999999999 664 2232
Q ss_pred cccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 010766 360 STRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWRTWAACFIQAAWRRHSKKKLAQSLQEAEDRLQD 439 (502)
Q Consensus 360 ~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ 439 (502)
+.++++|+++|+++.| +++|. |++...+++.... ......++.......++++|+..
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~----------------~l~~~~~~~~~~~~~~~~~Rl~~ 125 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ----------------GLAEAYRRIERLATQRLKNRMAA 125 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 4889999999999999 98886 7766544333222 23345556667778899999999
Q ss_pred HHhhc----------cccccccchhhhHhHHhhhhhchhhhhccCC
Q 010766 440 ALATE----------AGALTSLGATMYASKFAANLLHPLRLRQNGS 475 (502)
Q Consensus 440 ll~~~----------p~~~~~ip~~~iASylGi~~~~lsrir~~~~ 475 (502)
++.+. +.+...+++.+||+++|++++++||+.++..
T Consensus 126 ~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 126 ALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp HHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 87763 2356779999999999999999999977643
No 31
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.74 E-value=3.1e-18 Score=148.21 Aligned_cols=129 Identities=67% Similarity=1.103 Sum_probs=108.7
Q ss_pred HHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechh
Q 010766 264 DLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 343 (502)
Q Consensus 264 ~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~ 343 (502)
++++++++|..++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..++|++.++.+..+++|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 45788999999999999999999999999999999999999999999999999977566777755423499999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 344 LLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
++++.+.+.++.+.++++++++|+++|+++.|++++|.++++++|+++.
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8622245544333334588999999999999999999999999997653
No 32
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.73 E-value=5e-17 Score=142.26 Aligned_cols=124 Identities=27% Similarity=0.367 Sum_probs=109.0
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeec
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fG 341 (502)
.++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 45788999999999999999999999999999999999999999999999999999964 4566654 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHH
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 397 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~ 397 (502)
+.+++ .+.+ +.++++|.++|+++.|++++|.++++++|++...+++.
T Consensus 82 ~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 128 (149)
T 2pqq_A 82 ELSLF---DPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA 128 (149)
T ss_dssp GGGGT---SCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH
T ss_pred hHHhc---CCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH
Confidence 99874 3332 48899999999999999999999999999888744433
No 33
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.72 E-value=1e-16 Score=141.19 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=109.0
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeec
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fG 341 (502)
.++++++++|..++++.+..++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 56789999999999999999999999999999999999999999999999999999964 4566654 59999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHh
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 400 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~ 400 (502)
+.+++ .+.+ ++.++++|.++|+++.|++++|.++++++|++...+++...+
T Consensus 89 ~~~~~---~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMF---MDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGG---SSCS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhc---cCCC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99984 3332 148899999999999999999999999999988866655443
No 34
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.69 E-value=3.8e-16 Score=135.02 Aligned_cols=121 Identities=28% Similarity=0.453 Sum_probs=106.8
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
.++++++++|.+++++.+..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G~ 81 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGE 81 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEECH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEeee
Confidence 567999999999999999999999999999999999999999999999999999998654 2 57899999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHh
Q 010766 343 ALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 400 (502)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~ 400 (502)
.+++ .+.+ +.++++|.++|+++.|++++|.++++++|++...+++...+
T Consensus 82 ~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 82 MALI---SGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHH---HCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHhc---cCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9874 3332 48899999999999999999999999999988765555443
No 35
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.68 E-value=2.5e-17 Score=172.60 Aligned_cols=204 Identities=15% Similarity=0.111 Sum_probs=150.2
Q ss_pred CChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceee
Q 010766 249 LPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTG 327 (502)
Q Consensus 249 Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~ 327 (502)
.|+..|.+...+...+.++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.. .+|++.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 5677787777788889999999999999999999999999999999999999999999999999999999964 344321
Q ss_pred eeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 010766 328 FFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRFHSVQWR 407 (502)
Q Consensus 328 ~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~~~~~~~ 407 (502)
...+..+++|++||+.+ + . +.+ ++++++|.++|+++.|++++|.+++.++|++...+++.+......
T Consensus 107 ~~~~~~~~~G~~fGe~~-l--~-~~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~l~~--- 173 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-L--D-NTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVMET--- 173 (469)
T ss_dssp CEEEEEECTTCEECGGG-G--G-TCB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSCSCC---
T ss_pred ceEEEEccCCCCcchhh-h--C-CCC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHHHh---
Confidence 11469999999999988 5 2 222 489999999999999999999999999998765443332221111
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc-c-----------cccccchhhhHhHH-hhhhhchhhh
Q 010766 408 TWAACFIQAAWRRHSKKKLAQSLQEAEDRLQDALATEA-G-----------ALTSLGATMYASKF-AANLLHPLRL 470 (502)
Q Consensus 408 ~~~~~~~q~~~~~~~~r~~~~~~~~a~ery~~ll~~~p-~-----------~~~~ip~~~iASyl-Gi~~~~lsri 470 (502)
+... +... ...........++.+|+..++.... . ....++...+|+|| |++++++||.
T Consensus 174 -~~~~--~~l~--~~~~~~~~~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela~~llg~~~~t~SR~ 244 (469)
T 1o7f_A 174 -GSNN--DRIP--DKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRT 244 (469)
T ss_dssp -----------------CCCSHHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSSSCCSCHH
T ss_pred -ccCc--ccCC--CcCCCchHHHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchHHHHHhcCCCCCCHH
Confidence 1110 0000 0000122355677777777654322 1 22335678899998 9999999987
No 36
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.67 E-value=3.5e-16 Score=138.33 Aligned_cols=118 Identities=17% Similarity=0.230 Sum_probs=105.1
Q ss_pred HHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCe
Q 010766 260 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDF 339 (502)
Q Consensus 260 ~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~ 339 (502)
.....+++++++|.+++++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++. +|+ .+..+++|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~----~~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE----EEEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE----EEEEecCCCE
Confidence 4456789999999999999999999999999999999999999999999999999999997 343 3588999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 340 CGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 340 fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
||+.+++ .+.+ +.++++|+++|+++.|++++|.++++++|.+++
T Consensus 108 fGe~~~~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALI---YGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHH---HCCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhh---cCCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 9999985 2332 488999999999999999999999999997765
No 37
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.65 E-value=1.4e-15 Score=149.71 Aligned_cols=136 Identities=17% Similarity=0.291 Sum_probs=119.9
Q ss_pred HHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecC
Q 010766 244 GLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG 323 (502)
Q Consensus 244 ~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~ 323 (502)
....++|+..|.+...++..+.++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999965 3
Q ss_pred ceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHH
Q 010766 324 GRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQ 394 (502)
Q Consensus 324 ~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~ 394 (502)
|+ .+..+.+|++||+.+++ .+.+ ++++++|.++|+++.|++++|.+++..+|......
T Consensus 97 g~----~~~~~~~G~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~ 154 (299)
T 3shr_A 97 GV----KLCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 154 (299)
T ss_dssp TE----EEEEECTTCEESCSGGG---TTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CE----EEEEeCCCCeeeHhHHh---cCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHH
Confidence 33 36899999999999874 3333 58999999999999999999999999999766533
No 38
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.63 E-value=4.7e-16 Score=134.46 Aligned_cols=93 Identities=6% Similarity=0.185 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhhccC
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRLEEMRVKRQDAEQWMSHRML 218 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l 218 (502)
.|..|+||+++|+|||||||++|.|..+++++++++++|++++|++++.+++.+..........+...+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 38999999999999999999999999999999999999999999999999998876544433332222222233344556
Q ss_pred chhHHHHHHHHHH
Q 010766 219 PENLRDRIRRYEQ 231 (502)
Q Consensus 219 ~~~l~~rv~~y~~ 231 (502)
+++.+..++++.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666553
No 39
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.63 E-value=1.2e-15 Score=134.40 Aligned_cols=63 Identities=10% Similarity=0.295 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL 199 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~ 199 (502)
...|..|+||+++|+|||||||++|.|..+++++++++++|..++++.+|.+++.+.+...++
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999999999999999999999998765443
No 40
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.62 E-value=7.4e-15 Score=128.97 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHhHh
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQK------YLES----TTVRLEEMRVKRQD 208 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~------i~~~----~~~~~~~~~~~~~~ 208 (502)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.++. +... .+....+..++++.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999886 3332 24444556677889
Q ss_pred HHHHhhhccCchhHHHH
Q 010766 209 AEQWMSHRMLPENLRDR 225 (502)
Q Consensus 209 i~~~m~~~~l~~~l~~r 225 (502)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999998865
No 41
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.62 E-value=2.2e-15 Score=127.63 Aligned_cols=61 Identities=10% Similarity=0.307 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 138 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 138 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
..|..|+||+++|+|||||||++|.|..+++++++++++|..++++.+|.+++.+.+..++
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3599999999999999999999999999999999999999999999999999999766543
No 42
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.62 E-value=3.1e-15 Score=140.95 Aligned_cols=57 Identities=19% Similarity=0.451 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 138 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 194 (502)
Q Consensus 138 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~ 194 (502)
..|..|+||+++|+|||||||++|.|..++++++++|++|.+++|+.+|.+++.+++
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999999998865
No 43
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.62 E-value=4.4e-15 Score=148.45 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=110.6
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeec
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fG 341 (502)
.++++++++|.+++++.+..+...++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++ .+..+++|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA---IIARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE---EEEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE---EEEEecCCCEee
Confidence 46789999999999999999999999999999999999999999999999999999964 45555 369999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHhh
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFRF 401 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~~ 401 (502)
+.+++ .+.+ ++++++|+++|+++.|++++|.+++ ++|++...+++.....
T Consensus 89 e~~l~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 89 EIALL---RDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHH---HTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HHHhc---CCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 99885 3333 4899999999999999999999999 9999887666555443
No 44
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=135.36 Aligned_cols=124 Identities=13% Similarity=0.229 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeC-CCCEEEecCCCcCeEEEEEeeEEEEEEecCceeee
Q 010766 250 PKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYT-EKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGF 328 (502)
Q Consensus 250 p~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~-~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~ 328 (502)
||+.|.+-.......+++++++|..++++.++.++..++.+.|+ +|++|+++|+.++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 34444444444556788999999999999999999999999999 999999999999999999999999986 44544
Q ss_pred eEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEE-EEccceeEEEecHHHHHHHHHHhH
Q 010766 329 FNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTV-QALTEVEAFSLMADDLKSVASQFR 388 (502)
Q Consensus 329 ~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v-~A~~~~~l~~i~~~~f~~ll~~~P 388 (502)
..+++|++||+.+++ .+.+ +.+++ +|.++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~~---~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---DKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---CCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---CCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 558899999999873 3332 36788 999999999999999999987765
No 45
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.58 E-value=4.7e-15 Score=145.81 Aligned_cols=128 Identities=22% Similarity=0.384 Sum_probs=111.9
Q ss_pred HHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEec--CceeeeeEeEEeCCC
Q 010766 260 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY--GGRTGFFNAVYLKAG 337 (502)
Q Consensus 260 ~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~--~~~e~~~~i~~l~~G 337 (502)
..+..+++.+++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++.+ +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678889999999999999999999999999999999999999999999999999999754 566643 5999999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 010766 338 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHA 398 (502)
Q Consensus 338 ~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~ 398 (502)
++||+.+++ .+.+ +.++++|.++|+++.|++++|.+++..+|++...+++..
T Consensus 231 ~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l 282 (299)
T 3shr_A 231 DWFGEKALQ---GEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDA 282 (299)
T ss_dssp CEECGGGGS---SSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEeChHHHh---CCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHH
Confidence 999999874 4443 489999999999999999999999999998876554443
No 46
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.57 E-value=3.2e-14 Score=139.15 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=109.4
Q ss_pred HHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEec-Cc-eeeeeEeEEeCCCC
Q 010766 261 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GG-RTGFFNAVYLKAGD 338 (502)
Q Consensus 261 ~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~-~~-~e~~~~i~~l~~G~ 338 (502)
+...++++++.|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++... +| ++. .+..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~--~~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFV--EVGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEE--EEEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccE--EEEEeCCCC
Confidence 34567788899999999999999999999999999999999999999999999999998533 33 333 469999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010766 339 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 399 (502)
Q Consensus 339 ~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~ 399 (502)
+||+.+++ .+.+ ++++++|.++|+++.|++++|.+++..+|++..+.++...
T Consensus 232 ~fGe~~ll---~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 232 YFGEIALL---MNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp EECSGGGT---CCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred EecHHHHc---CCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999984 4443 4899999999999999999999999999988765554443
No 47
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.56 E-value=2.3e-14 Score=147.71 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeC
Q 010766 256 DIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLK 335 (502)
Q Consensus 256 ~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~ 335 (502)
+-......+.++++++|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++...+|++.+ +..+.
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l~ 214 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 214 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEec
Confidence 3345566789999999999999999999999999999999999999999999999999999999877777754 59999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 336 AGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 336 ~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
+|++||+.+++ ...+ +.++++|.++|+++.|++++|.+++..+|....
T Consensus 215 ~G~~fGe~all---~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 215 NRGSFGELALM---YNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp SCCEECGGGGT---SCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred CCCEEeeHHHh---cCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 99999999984 3443 489999999999999999999999999998764
No 48
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.56 E-value=4.3e-14 Score=138.24 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=111.5
Q ss_pred HHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCC
Q 010766 259 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 338 (502)
Q Consensus 259 ~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~ 338 (502)
.+...+.++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +|+ .+..+++|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~----~~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE----EEEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe----EEEEcCCCC
Confidence 44567889999999999999999999999999999999999999999999999999999998 343 369999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHHh
Q 010766 339 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAFR 400 (502)
Q Consensus 339 ~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~~ 400 (502)
+||+.+++ .+.+ +.++++|.++|+++.|++++|.+++..+|.+....+....+
T Consensus 108 ~fGe~~l~---~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 108 SFGELALI---YGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp EECGGGGT---CCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHh---cCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999873 4443 48999999999999999999999999999887766555443
No 49
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.5e-14 Score=137.53 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=105.0
Q ss_pred HHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 262 CWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 262 ~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
..+.++++++|.+++++.++.++..++.+.|++|++|+++|++++++|||.+|.|+++. +++. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 36788999999999999999999999999999999999999999999999999999986 3332 58999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHH
Q 010766 342 EALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQL 395 (502)
Q Consensus 342 e~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l 395 (502)
+.+++ .+.+ ++++++|.++|+++.|++++|.+++..+|.......
T Consensus 79 e~~l~---~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 123 (246)
T 3of1_A 79 ELALM---YNSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123 (246)
T ss_dssp HHHHH---HTCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHS
T ss_pred hhHHh---cCCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHH
Confidence 99885 2333 489999999999999999999999999997665433
No 50
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.8e-14 Score=135.64 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=105.5
Q ss_pred HHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 261 LCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 261 ~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
++..++++++.|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++ .+..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCcc
Confidence 3456778899999999999999999999999999999999999999999999999999986554 35999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 341 GEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 341 Ge~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
|+.+++ .+.+ +.++++|.++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~~---~~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVALL---NDLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHHH---HTCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHHh---CCCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 999985 2333 489999999999999999999999999997654
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=3e-14 Score=145.17 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=110.4
Q ss_pred HHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEec-CceeeeeEeEEeCCC
Q 010766 259 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAG 337 (502)
Q Consensus 259 ~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~-~~~e~~~~i~~l~~G 337 (502)
..++..++++++.|..+++..+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ +|++.+ .+..+++|
T Consensus 243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~-~v~~l~~G 321 (381)
T 4din_B 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYV-EVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCC-EEEEECTT
T ss_pred HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceE-EEEEeCCC
Confidence 3456678899999999999999999999999999999999999999999999999999999643 333222 36999999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHH
Q 010766 338 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQH 397 (502)
Q Consensus 338 ~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~ 397 (502)
++||+.+++ .+.+ +.++++|.++|+++.|++++|.+++..+|++..+.++.
T Consensus 322 d~fGe~all---~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~ 372 (381)
T 4din_B 322 DYFGEIALL---LNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQR 372 (381)
T ss_dssp CEECTTGGG---SCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHH
T ss_pred CEechHHHh---CCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHH
Confidence 999999984 4443 48999999999999999999999999999877644433
No 52
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=5.4e-14 Score=143.30 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=110.7
Q ss_pred HHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCC
Q 010766 258 KRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 337 (502)
Q Consensus 258 ~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G 337 (502)
......+.++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++. +|+ .+..+++|
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~----~v~~l~~G 197 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE----WVTNISEG 197 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE----EEEEEESS
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe----EeeeCCCC
Confidence 344567889999999999999999999999999999999999999999999999999999996 333 35889999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 010766 338 DFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSKQLQHAF 399 (502)
Q Consensus 338 ~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~~l~~~~ 399 (502)
++||+.+++ .+.+ +.++++|.++|+++.|++++|.+++..+|....+.+...+
T Consensus 198 ~~fGe~all---~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L 250 (381)
T 4din_B 198 GSFGELALI---YGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250 (381)
T ss_dssp CCBCGGGGT---SCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEchHHh---cCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHh
Confidence 999999984 3443 4899999999999999999999999999988765544433
No 53
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.51 E-value=9.3e-14 Score=120.63 Aligned_cols=59 Identities=12% Similarity=0.380 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 197 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~ 197 (502)
.|..|+||+++|+|||||||++|.|..+++++++++++|.++++++++.+++.+.+...
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999988855443
No 54
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.47 E-value=1.2e-13 Score=142.22 Aligned_cols=120 Identities=13% Similarity=0.243 Sum_probs=103.7
Q ss_pred HHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecC-------ceeeeeEeEEeC
Q 010766 263 WDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYG-------GRTGFFNAVYLK 335 (502)
Q Consensus 263 ~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~-------~~e~~~~i~~l~ 335 (502)
..++++++.|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+. |++. .+..++
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~--~l~~l~ 343 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAV--EIARCF 343 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------C--EEEEEC
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCcee--EEEEeC
Confidence 3467888999999999999999999999999999999999999999999999999996433 5554 359999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHHH
Q 010766 336 AGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHSK 393 (502)
Q Consensus 336 ~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~~ 393 (502)
+|++||+.+++ ...+ +.++++|.++|+++.|++++|.+++..+|++..+
T Consensus 344 ~G~~fGE~all---~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~ 392 (416)
T 3tnp_B 344 RGQYFGELALV---TNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR 392 (416)
T ss_dssp TTCEESGGGGT---CCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTC
T ss_pred CCCEecHHHHh---CCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHH
Confidence 99999999984 4443 5899999999999999999999999999987653
No 55
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.45 E-value=2.9e-13 Score=141.61 Aligned_cols=122 Identities=9% Similarity=0.157 Sum_probs=104.1
Q ss_pred HHHHHHHhccCcCccCCCHHHHHHHHhccce-eeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCC
Q 010766 259 RHLCWDLLMRVPMFEKMDDQLLDAMCDHLKP-VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAG 337 (502)
Q Consensus 259 ~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~-~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G 337 (502)
.+...+.+.++++|.+++++.+..++..+.. +.|++|++|+++|+.++.+|||.+|.|+++..++ . ++..+++|
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~---~~~~l~~G 406 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G---VVCTLHEG 406 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E---EEEEEETT
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e---eEEEecCC
Confidence 3445678999999999999999999999985 4899999999999999999999999999997433 2 46999999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEcc-ceeEEEecHHHHHHHHHHhHHHHHHH
Q 010766 338 DFCGEALLTWALDPQSSSNRPLSTRTVQALT-EVEAFSLMADDLKSVASQFRRLHSKQ 394 (502)
Q Consensus 338 ~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~-~~~l~~i~~~~f~~ll~~~P~~~~~~ 394 (502)
++||+.+++ .+.+ +.++++|.+ +|+++.|++++|.+++.++|++..++
T Consensus 407 ~~fGe~~ll---~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 407 DDFGKLALV---NDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp CEECGGGGT---CCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred CEEEEehhh---cCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 999999984 4443 489999999 79999999999999999999876633
No 56
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.42 E-value=8.2e-13 Score=138.98 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
+..|..|+||+++|||||||||+.|.+..++++++++|++|.+++++.+|.+.+.++....+
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999998877766553
No 57
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.39 E-value=2.2e-12 Score=107.59 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.++..+..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 108 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999988554433
No 58
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.35 E-value=2.2e-12 Score=140.54 Aligned_cols=133 Identities=11% Similarity=0.182 Sum_probs=111.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccc-eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEe
Q 010766 243 EGLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLK-PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTT 321 (502)
Q Consensus 243 ~~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~-~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~ 321 (502)
..++...| ..|.+...+...+.+.++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 34554444 4455444555678899999999999999999999998 789999999999999999999999999999975
Q ss_pred cCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc-ceeEEEecHHHHHHHHHHhHHH
Q 010766 322 YGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT-EVEAFSLMADDLKSVASQFRRL 390 (502)
Q Consensus 322 ~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~-~~~l~~i~~~~f~~ll~~~P~~ 390 (502)
++ . ++.++++|++||+.+++ .+.+ +.++++|++ +|+++.|++++|.++++++|++
T Consensus 91 g~--~---il~~l~~Gd~fGe~al~---~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 GK--G---VVCTLHEGDDFGKLALV---NDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp TT--E---EEEEEETTCEECHHHHH---HTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred CC--E---EEEEeCCCCEeehHHHh---CCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 32 2 46999999999999885 2332 489999999 5999999999999999999876
No 59
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.34 E-value=4.2e-13 Score=110.02 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.+++.+.+...+
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999888765443
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.34 E-value=5.1e-12 Score=144.25 Aligned_cols=136 Identities=20% Similarity=0.222 Sum_probs=111.0
Q ss_pred HHHhcCChHHHHHHHHHHHHHHhccCcCccCCCHHHHHHHHhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEec-
Q 010766 244 GLLRNLPKDLRRDIKRHLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY- 322 (502)
Q Consensus 244 ~il~~Lp~~Lr~~i~~~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~- 322 (502)
..|++-| .-|.+--.++....|+.+++|+++++..+..|+..+..+.|++|++||++||.++++|+|.+|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 4455544 33433333445677899999999999999999999999999999999999999999999999999999642
Q ss_pred --CceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHHHHHHHHHHhHHHHH
Q 010766 323 --GGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMADDLKSVASQFRRLHS 392 (502)
Q Consensus 323 --~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~~f~~ll~~~P~~~~ 392 (502)
++.+. .+..+++|+.||+ +++ ...| |+++++|.++|++++|++++|..++.++|+...
T Consensus 102 ~~~~~~~--~v~~l~~G~sFGE-all---~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 102 SSHQDAV--TICTLGIGTAFGE-SIL---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp SCTTSCE--EEEEEETTCEECG-GGG---GTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCce--eEEEecCCcchhh-hhc---cCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 22232 4689999999999 553 3333 599999999999999999999999999997543
No 61
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.32 E-value=1.2e-11 Score=99.93 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
.|..|+||+++|+|||||||+.|.|..+++++++.+++|..+++++++.++..++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 389999999999999999999999999999999999999999999999999887643
No 62
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.25 E-value=4.5e-11 Score=93.40 Aligned_cols=54 Identities=13% Similarity=0.377 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYL 192 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~ 192 (502)
.|..|+||+++|+|||||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999998865
No 63
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.22 E-value=6.5e-11 Score=135.13 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=99.5
Q ss_pred HHHHHHhccCcCccCCCHHHHHHHHhccceee-eCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCC
Q 010766 260 HLCWDLLMRVPMFEKMDDQLLDAMCDHLKPVL-YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGD 338 (502)
Q Consensus 260 ~~~~~~l~~~~~F~~ls~~~l~~l~~~~~~~~-~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~ 338 (502)
+...+.+.+++.|.+++......++..+.... +++|++|+++||.++.+|||.+|.|.++...++ .+..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~-----~v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-----VVCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE-----EEEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc-----ceEEecCCC
Confidence 44567889999999999999999999998765 578999999999999999999999999875443 358999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEccc-eeEEEecHHHHHHHHHHh
Q 010766 339 FCGEALLTWALDPQSSSNRPLSTRTVQALTE-VEAFSLMADDLKSVASQF 387 (502)
Q Consensus 339 ~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~-~~l~~i~~~~f~~ll~~~ 387 (502)
+||+.++ +.+.| |.++++|.++ |++++|++++|.+++.+-
T Consensus 408 ~FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp EECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 9999998 55554 4999999985 999999999999999763
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.13 E-value=4e-12 Score=113.60 Aligned_cols=62 Identities=11% Similarity=0.351 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 138 KKFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLESTTVRL 199 (502)
Q Consensus 138 ~~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~~ 199 (502)
..|..|+||+++|+|||||||++|.|..+++++++++++|.++++++++.+++.+.....+.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999887554443
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.05 E-value=5.4e-10 Score=109.00 Aligned_cols=55 Identities=9% Similarity=0.168 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLE 193 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~ 193 (502)
.|..|+||+++|+|||||||++|.+...++++++.+++|.+++|+++|.+.+.+.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999998877664
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.03 E-value=3.4e-10 Score=111.57 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
.|..|+||+++|+|||||||++|.+...++++++.+++|.+++++++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999998887644
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.96 E-value=2.2e-09 Score=104.22 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
.|..|+||+++|+|||||||++|.|...++|+++.+++|..+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999988654
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.91 E-value=5.6e-09 Score=102.56 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
.|..|+||+++|+|||||||+.|.+...++++++.+++|.+++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999998887654
No 69
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.78 E-value=1.8e-08 Score=107.71 Aligned_cols=54 Identities=17% Similarity=0.403 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGN-MQKYL 192 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~-i~~i~ 192 (502)
.|..|+||+++|+|||||||++|.|..+++++++++++|.+++++.++. +.+.+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999987 54444
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.74 E-value=3.5e-08 Score=95.84 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhcccCCCccccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 140 FFYCFWWGLRNLSSLGQNLKTSTFVGEV------FFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 140 Yl~slYwa~~t~ttvGyGdi~p~~~~E~------~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
|+.|+||+++|+|||||||++|.+...+ +++++++++|..+++++++.+++.+.....+
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998887 5999999999999999999998888766543
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.71 E-value=9.6e-08 Score=91.36 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcccCCCccccCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 140 FFYCFWWGLRNLSSLGQNLKTSTFVGE-------VFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 140 Yl~slYwa~~t~ttvGyGdi~p~~~~E-------~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
|+.|+||+++|+|||||||++|.+... ++++++++++|..+++++++.+++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998853 99999999999999999999998877544
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.69 E-value=4.7e-08 Score=96.12 Aligned_cols=59 Identities=15% Similarity=0.324 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcccCCCccccC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLESTTV 197 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~--~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~ 197 (502)
.+..+||||+.|+|||||||+.|+ +..-++++++.+++|.++.|+.+|.+..-+..-..
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 477899999999999999999997 57788999999999999999999988777765433
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.66 E-value=4.2e-08 Score=93.87 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 194 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~ 194 (502)
.|..|+||+++|+|||||||++|.|...++++++.+++|..+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999876543
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.58 E-value=1.8e-07 Score=92.02 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcccCCCccccC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTST--FVGEVFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~--~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
.+..+|||++.|+|||||||+.|+ +..-++++.+.+++|.++.|+.+|.+..-+..-
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp 152 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARP 152 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 588999999999999999999864 788899999999999999999999887766543
No 75
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.40 E-value=3.9e-07 Score=88.60 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHhhcccCCC-ccc-cCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 136 FPKKFFYCFWWGLRNLSSLGQN-LKT-STFVGE----VFFAIFISISGLVLFALLIGNMQKYLESTTVR 198 (502)
Q Consensus 136 ~~~~Yl~slYwa~~t~ttvGyG-di~-p~~~~E----~~~~i~~~~~g~~~~a~ii~~i~~i~~~~~~~ 198 (502)
.+..+..|++|++.|+||+||| |+. |.+..- ..+.+++++.|.++.+..+|.+.+-+.....+
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999 985 776543 78888999999999999999988877655443
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.39 E-value=2e-08 Score=100.19 Aligned_cols=57 Identities=12% Similarity=0.381 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLEST 195 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~~ 195 (502)
.|..|+||+++|+|||||||+.|.|..+++++++++++|.++++++++.+++.+...
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999999999999999999999999998887654
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=95.91 E-value=0.033 Score=51.54 Aligned_cols=23 Identities=4% Similarity=-0.270 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhhcccCCCcc
Q 010766 137 PKKFFYCFWWGLRNLSSLGQNLK 159 (502)
Q Consensus 137 ~~~Yl~slYwa~~t~ttvGyGdi 159 (502)
++....|++|.+.++|+.||+|+
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i 185 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETV 185 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHH
T ss_pred ccCHHHHHHHHHHHHccCCHHHH
Confidence 34588999999999999999987
No 78
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=80.67 E-value=7.7 Score=30.89 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 366 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A 366 (502)
+....++||..+-..--....+++|++|.+++... +++ ..+.+||.+---. . ....+.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i~ip~-------~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GAQ-----RRLHQGDLLYLGA-------G-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TEE-----EEECTTEEEEECT-------T-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CEE-----EEECCCCEEEECC-------C-------CcEEEEe
Confidence 44556788888766555667999999999998763 333 7789999773322 1 1556788
Q ss_pred ccceeEEE
Q 010766 367 LTEVEAFS 374 (502)
Q Consensus 367 ~~~~~l~~ 374 (502)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88876554
No 79
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=78.59 E-value=6.6 Score=35.73 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=53.7
Q ss_pred ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 010766 286 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 365 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~ 365 (502)
.+....++||+.+=..--+.+.+.+|++|.+++... |++ ..+.+||++--- +. .+..+.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~~~~p-------~~-------~~H~~~ 96 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NNK-----KTISNGDFLEIT-------AN-------HNYSIE 96 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SCE-----EEEETTEEEEEC-------SS-------CCEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CEE-----EEECCCCEEEEC-------CC-------CCEEEE
Confidence 345566899999987777889999999999998874 333 678999876322 22 266889
Q ss_pred EccceeEEEecH
Q 010766 366 ALTEVEAFSLMA 377 (502)
Q Consensus 366 A~~~~~l~~i~~ 377 (502)
|.+++.++.+..
T Consensus 97 a~~~~~~l~i~~ 108 (227)
T 3rns_A 97 ARDNLKLIEIGE 108 (227)
T ss_dssp ESSSEEEEEEEE
T ss_pred ECCCcEEEEEEe
Confidence 999999997733
No 80
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=77.30 E-value=8 Score=30.51 Aligned_cols=65 Identities=9% Similarity=0.156 Sum_probs=41.6
Q ss_pred eeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccc
Q 010766 290 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTE 369 (502)
Q Consensus 290 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~ 369 (502)
..+++|..+-...-....+++|++|.+.+... ++. ..+.+||.+---+ . ....+.+.++
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~--~~~-----~~l~~Gd~i~i~~-------~-------~~H~~~~~~~ 101 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITFD--DQK-----IDLVPEDVLMVPA-------H-------KIHAIAGKGR 101 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEET--TEE-----EEECTTCEEEECT-------T-------CCBEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEEC--CEE-----EEecCCCEEEECC-------C-------CcEEEEeCCC
Confidence 33566665544444567899999999997763 333 6789999773222 1 1345566677
Q ss_pred eeEEEe
Q 010766 370 VEAFSL 375 (502)
Q Consensus 370 ~~l~~i 375 (502)
+.++.+
T Consensus 102 ~~~~~i 107 (114)
T 2ozj_A 102 FKMLQI 107 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 776654
No 81
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=74.01 E-value=17 Score=28.49 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=44.7
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 366 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A 366 (502)
+....++||..+-..--...++++|++|.+.+... ++. ..+.+|+.+--- +. ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~--~~~-----~~l~~Gd~~~ip-------~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITID--QET-----YRVAEGQTIVMP-------AG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEET--TEE-----EEEETTCEEEEC-------TT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEEC--CEE-----EEECCCCEEEEC-------CC-------CCEEEEE
Confidence 34455778877644433467899999999998763 333 678999987322 21 1445677
Q ss_pred ccceeEEEe
Q 010766 367 LTEVEAFSL 375 (502)
Q Consensus 367 ~~~~~l~~i 375 (502)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777777655
No 82
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=73.15 E-value=16 Score=28.61 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=44.8
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 366 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A 366 (502)
+....++||..+-..--...++++|++|.+.+.. +++. ..+.+||.+--- +. ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~-----~~l~~Gd~~~ip-------~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGVI-----KVLTAGDSFFVP-------PH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTEE-----EEECTTCEEEEC-------TT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCEE-----EEeCCCCEEEEC-------cC-------CceeeEe
Confidence 3445578887653333346789999999999876 3333 679999986322 21 1445677
Q ss_pred ccceeEEEe
Q 010766 367 LTEVEAFSL 375 (502)
Q Consensus 367 ~~~~~l~~i 375 (502)
.+++.++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778877766
No 83
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=71.37 E-value=12 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=34.0
Q ss_pred ceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 288 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
....+.||..+-..- ..+++++|++|.+++.. +|++ ..+.+||.+-
T Consensus 43 ~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~~-----~~l~~GD~v~ 88 (119)
T 3lwc_A 43 GYGRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGET-----VTAGPGEIVY 88 (119)
T ss_dssp EEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEEEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCEE-----EEECCCCEEE
Confidence 344577887664443 67899999999999887 3443 6799999873
No 84
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=65.59 E-value=30 Score=29.92 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=51.0
Q ss_pred HHHHHHHhccce----eeeCCCCEEEec-CC----------CcCeEEEEEeeEEEEEEecCc----eeeeeEeEEeCCCC
Q 010766 278 QLLDAMCDHLKP----VLYTEKSFIVRE-GD----------PVEEMLFVMRGNLVSTTTYGG----RTGFFNAVYLKAGD 338 (502)
Q Consensus 278 ~~l~~l~~~~~~----~~~~~ge~I~~~-Ge----------~~~~lyfI~~G~v~~~~~~~~----~e~~~~i~~l~~G~ 338 (502)
+-+++....+++ +....+++++.. |. +.++++++++|.+.+-..++| +- .-..+.+||
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~---~dv~i~eGd 88 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKF---IDIIINEGD 88 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEE---EEEEECTTE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccce---eeEEECCCC
Confidence 345566666666 554446665432 33 345899999999999977655 22 126789999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHH
Q 010766 339 FCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMAD 378 (502)
Q Consensus 339 ~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~ 378 (502)
+|=--.- . +.+-++-.+|..+.+.+.
T Consensus 89 mfllP~g------v--------pHsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 89 SYLLPGN------V--------PHSPVRFADTVGIVVEQD 114 (176)
T ss_dssp EEEECTT------C--------CEEEEECTTCEEEEEEEC
T ss_pred EEEcCCC------C--------CcCCcccCCcEEEEEEec
Confidence 9833221 1 334444566766666543
No 85
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=63.11 E-value=28 Score=27.63 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=34.1
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
+....++||..+-..--...++++|++|.+.+... ++. ..+.+|+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~--~~~-----~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG--EET-----RVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET--TEE-----EEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC--CEE-----EEeCCCCEE
Confidence 44556788887654444457899999999998763 332 678999976
No 86
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=62.25 E-value=8 Score=42.26 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcccCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010766 139 KFFYCFWWGLRNLSSLGQNLKTSTFVGEVFFAIFISISGLVLFALLIGNMQKYLES 194 (502)
Q Consensus 139 ~Yl~slYwa~~t~ttvGyGdi~p~~~~E~~~~i~~~~~g~~~~a~ii~~i~~i~~~ 194 (502)
....+++|++.++++.| ++..|.+...+++.+++++++.++.+...+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46678999999999988 78899999999999999999999999999999999875
No 87
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=59.23 E-value=30 Score=31.22 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=48.3
Q ss_pred ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 010766 286 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 365 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~ 365 (502)
.+....++||+.+-..--+.+.+++|++|.+++... |+. ..+.+||.+---+. ....+.
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--g~~-----~~l~~Gd~i~ip~~--------------~~H~~~ 212 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD--GKP-----FIVKKGESAVLPAN--------------IPHAVE 212 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET--TEE-----EEEETTEEEEECTT--------------SCEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC--CEE-----EEECCCCEEEECCC--------------CcEEEE
Confidence 345667899998765555567899999999998763 333 77899998733221 155677
Q ss_pred E-ccceeEEEe
Q 010766 366 A-LTEVEAFSL 375 (502)
Q Consensus 366 A-~~~~~l~~i 375 (502)
| .++++++.+
T Consensus 213 ~~~~~~~~ll~ 223 (227)
T 3rns_A 213 AETENFKMLLI 223 (227)
T ss_dssp CCSSCEEEEEE
T ss_pred eCCCCEEEEEE
Confidence 8 888877653
No 88
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=55.85 E-value=23 Score=30.61 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=27.6
Q ss_pred CcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 304 PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 304 ~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
+.++++++++|.+.+-..++|+.. -..+.+||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 467899999999999887766432 26899999983
No 89
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=53.29 E-value=36 Score=25.54 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=32.0
Q ss_pred ceeeeCCCCEEEecCCC-cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 288 KPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
....++||..+-..--. .+++++|++|.+.+... ++. ..+.+||.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~~-----~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EEE-----ALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TEE-----EEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CEE-----EEeCCCCEE
Confidence 44557788776433323 35799999999998763 332 678999977
No 90
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=52.49 E-value=21 Score=30.99 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=36.2
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
+....+.||......-..++++++|++|.+++...+.+.. ....+.+||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~---~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR---DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE---EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc---EEEEECCCCEEE
Confidence 4556688888765543345799999999999875433222 236899999874
No 91
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=52.47 E-value=30 Score=26.54 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=33.0
Q ss_pred cceeeeCCCCEEEec--CCC-cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 287 LKPVLYTEKSFIVRE--GDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~--Ge~-~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
+....+.||..+-.. --. ..++++|++|.+.+... ++. ..+.+||++
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~~-----~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GHT-----QALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TEE-----EEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CEE-----EEeCCCCEE
Confidence 344567888876443 223 57899999999998763 332 678999877
No 92
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=52.08 E-value=33 Score=29.86 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=31.4
Q ss_pred eeCCCCEEEe---cCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 291 LYTEKSFIVR---EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 291 ~~~~ge~I~~---~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
.++||...-. ..-...++++|++|.+.+...+++.. ....+.+||.+-
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~---~~~~l~~GD~~~ 173 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENP---KEALLPTGASMF 173 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSC---EEEEECTTCEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCc---ccEEECCCCEEE
Confidence 4566665431 22234689999999999887543222 137899999873
No 93
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=51.82 E-value=56 Score=25.23 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=34.1
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
+....+.||+.-.. -...++++|++|.+.+...+ ++. ..+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~-g~~-----~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTED-GKK-----YVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETT-CCE-----EEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECC-CCE-----EEECCCCEEE
Confidence 44566788876554 34679999999999987742 333 6799999873
No 94
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=47.15 E-value=7.4 Score=30.61 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=20.6
Q ss_pred ccchhhhHhHHhhhhhchhhhhc
Q 010766 450 SLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 450 ~ip~~~iASylGi~~~~lsrir~ 472 (502)
..+++.||..||++.-+.|||.|
T Consensus 58 e~TQREIA~~lGiS~stISRi~r 80 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRGSN 80 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhhhHHHH
Confidence 47899999999999999999943
No 95
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=46.39 E-value=71 Score=24.21 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=41.0
Q ss_pred ceeeeCCCCEEEecCCCc-CeE-EEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 010766 288 KPVLYTEKSFIVREGDPV-EEM-LFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 365 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~-~~l-yfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~ 365 (502)
....+.+|..+-..--.. .++ ++|++|.+.+...+ ++. ..+.+||.+---. . ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~~-----~~l~~Gd~~~ip~-------~-------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DAV-----IPAPRGAVLVAPI-------S-------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GCE-----EEECTTEEEEEET-------T-------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CEE-----EEECCCCEEEeCC-------C-------CcEEEE
Confidence 334567887664332222 466 89999999877632 232 6789998763222 1 144566
Q ss_pred EccceeEEEe
Q 010766 366 ALTEVEAFSL 375 (502)
Q Consensus 366 A~~~~~l~~i 375 (502)
+.+++.++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 7777765543
No 96
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=45.76 E-value=31 Score=27.38 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=32.3
Q ss_pred cceeeeCCCCEEEecCCC-cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 287 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
+....++||..+-..--. ..++++|++|.+.+... ++++ ..+.+||++
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~~-----~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGIV-----THLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTCE-----EEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCeE-----EEeCCCCEE
Confidence 445567888776443333 36889999999987652 3332 678999976
No 97
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=45.54 E-value=14 Score=28.19 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=31.1
Q ss_pred ceeeeCCCCEEE-ecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 288 KPVLYTEKSFIV-REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 288 ~~~~~~~ge~I~-~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
....++||...- ..-+..+.+++|++|.+++...++.+. ..+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~-----~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVT-----SQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEE-----EEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEE-----EEEcCCCEEE
Confidence 345567777542 222222359999999999876432122 6799999873
No 98
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=45.37 E-value=30 Score=26.05 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=34.4
Q ss_pred CeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecH
Q 010766 306 EEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMA 377 (502)
Q Consensus 306 ~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~ 377 (502)
.++++|++|.+.+...+ +. ..+.+||.+-- .+. ....+.+.+++.++.++.
T Consensus 51 ~e~~~v~~G~~~~~~~~--~~-----~~l~~Gd~~~i-------p~~-------~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRD--QN-----ITLQAGEMYVI-------PKG-------VEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEECSS--CE-----EEEETTEEEEE-------CTT-------CCBEEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECC--EE-----EEEcCCCEEEE-------CCC-------CeEeeEcCCCCEEEEEEc
Confidence 78999999999877643 22 67889987622 222 134556667888887753
No 99
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=41.95 E-value=44 Score=27.79 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=40.6
Q ss_pred cCCCcCeEEEEEeeEEEEEEecCc--eeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHH
Q 010766 301 EGDPVEEMLFVMRGNLVSTTTYGG--RTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMAD 378 (502)
Q Consensus 301 ~Ge~~~~lyfI~~G~v~~~~~~~~--~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~ 378 (502)
.-+..|++|+|++|.+.+...+++ .... ....+.+|+++---.- . ..+-.|.++|.++.+...
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvVPkG------v--------eH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNVPAE------C--------WFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEECTT------C--------EEEEEECTTCEEEEEEES
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEeCCC------c--------cCcccCCCceEEEEEEeC
Confidence 345578999999999998865321 1001 2367899998732211 1 345677788888887655
No 100
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=41.76 E-value=47 Score=28.28 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=31.8
Q ss_pred ceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 288 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
....+.||..+-..--...++++|++|.+.+... ++. ..+.+||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DRV-----EPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TEE-----EEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CEE-----EEECCCCEEE
Confidence 3445667765533333467899999999998763 332 6789999773
No 101
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=41.51 E-value=53 Score=27.71 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=24.0
Q ss_pred CcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 304 PVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 304 ~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
..+++++|++|.+++.. +|+. ..+++||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~~-----~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGRK-----VSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTEE-----EEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEE--CCEE-----EEEcCCCEE
Confidence 35689999999999886 4443 779999987
No 102
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=40.07 E-value=47 Score=31.09 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=40.7
Q ss_pred CCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEccceeEEEecHH
Q 010766 303 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVEAFSLMAD 378 (502)
Q Consensus 303 e~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~l~~i~~~ 378 (502)
+..+++|++++|.+.+-..++|+-+ -..+++|++|=--.- . +.+=++-++|..++|.+.
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfllP~g------v--------~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFLLPAR------V--------PHSPQRFANTVGLVVERR 107 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEEECTT------C--------CEEEEECTTCEEEEEEEC
T ss_pred CCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEEeCCC------C--------CcCCcccCCeEEEEEeec
Confidence 3467999999999999877766432 267899998832221 1 344566778888888754
No 103
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=39.60 E-value=54 Score=26.78 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=31.0
Q ss_pred eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 289 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 289 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
...+.||..-... ..+++++|++|.+.+... |+. ..+++||.+--
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~~--g~~-----~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRHE--GET-----MIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEET--TEE-----EEEETTCEEEE
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEEC--CEE-----EEECCCcEEEE
Confidence 3456677432222 367999999999998764 443 67999998743
No 104
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=38.72 E-value=40 Score=31.44 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=44.9
Q ss_pred ceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEc
Q 010766 288 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL 367 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~ 367 (502)
-...++||.---......+++.||++|.+.+...+ |++ ..+.+|+++-.-+ . ...+++..
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~~-----~~L~~Gds~y~p~-------~-------~~H~~~N~ 132 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SSS-----KKLTVDSYAYLPP-------N-------FHHSLDCV 132 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CCC-----EEECTTEEEEECT-------T-------CCCEEEES
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-CcE-----EEEcCCCEEEECC-------C-------CCEEEEeC
Confidence 34557777653222344678999999999988642 333 6799999874332 1 13445556
Q ss_pred cceeEEEecH
Q 010766 368 TEVEAFSLMA 377 (502)
Q Consensus 368 ~~~~l~~i~~ 377 (502)
++++++.+.+
T Consensus 133 ~~Ar~l~V~k 142 (266)
T 4e2q_A 133 ESATLVVFER 142 (266)
T ss_dssp SCEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 7888888754
No 105
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=38.14 E-value=25 Score=28.45 Aligned_cols=45 Identities=22% Similarity=0.151 Sum_probs=30.2
Q ss_pred eeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 291 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 291 ~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
...||..-....+ .+++++|++|.+.+... +|+. ..+++||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~~-----~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGTV-----HAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCCE-----EEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCeE-----EEECCCCEEEE
Confidence 3455655543322 27999999999998764 3433 67899998743
No 106
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=37.79 E-value=54 Score=26.47 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=31.5
Q ss_pred ceeeeCCCCEEEecCCC-cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 288 KPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
....++||..+-..--. ..++++|++|.+.+... ++. ..+.+||.+
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GKD-----VPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TEE-----EEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CEE-----EEeCCCcEE
Confidence 34567888765332222 46899999999998763 333 678999977
No 107
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=37.69 E-value=1.5e+02 Score=23.25 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=45.3
Q ss_pred eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEc-
Q 010766 289 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQAL- 367 (502)
Q Consensus 289 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~- 367 (502)
...++||...-..--...++++|++|.+.+... ++. ..+.+|+++---.- . ...+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~--~~~-----~~l~~Gd~~~i~~~------~--------~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRIN--DED-----FPVTKGDLIIIPLD------S--------EHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEET--TEE-----EEEETTCEEEECTT------C--------CEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEEC--CEE-----EEECCCcEEEECCC------C--------cEEeEeCC
Confidence 344566664322223456899999999998773 333 67899987732221 1 2234443
Q ss_pred -ccee--EEEecHHHHHHHHHHhH
Q 010766 368 -TEVE--AFSLMADDLKSVASQFR 388 (502)
Q Consensus 368 -~~~~--l~~i~~~~f~~ll~~~P 388 (502)
++++ ++.++.+-+..++.+-+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 3344 44566666666655433
No 108
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=37.47 E-value=18 Score=28.23 Aligned_cols=40 Identities=3% Similarity=-0.065 Sum_probs=30.5
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCC
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSG 477 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~ 477 (502)
+..+++.+++. ..+++..+|..+|+++.+|+|+-|+..+.
T Consensus 6 ~~~~~i~~~~~--~~~~~~~lA~~~~~s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 6 QVEEYIEANWM--RPITIEKLTALTGISSRGIFKAFQRSRGY 45 (108)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHTCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHccc--CCCCHHHHHHHHCCCHHHHHHHHHHHhCc
Confidence 44556666553 35889999999999999999997766544
No 109
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=37.22 E-value=82 Score=28.62 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=42.1
Q ss_pred eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 010766 289 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 368 (502)
Q Consensus 289 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~ 368 (502)
...++||...-..- .+++.+|++|.+.+... +++ ..+++||++---+- . ...+.+.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~--~~~-----~~l~~Gd~~~~p~~------~--------~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVG--GET-----RTLREYDYVYLPAG------E--------KHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECS--SCE-----EEECTTEEEEECTT------C--------CCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEEC--CEE-----EEECCCCEEEECCC------C--------CEEEEeCC
Confidence 44577877654442 77899999999998763 333 67999998743321 1 23344447
Q ss_pred ceeEEEec
Q 010766 369 EVEAFSLM 376 (502)
Q Consensus 369 ~~~l~~i~ 376 (502)
++.++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77777663
No 110
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=36.93 E-value=69 Score=31.34 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=54.4
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 366 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A 366 (502)
+....+++|+..-..-..+..+|.|.+|.-.+.. +++. ...++||.|---+. ...+..+
T Consensus 281 ~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~~-----~~w~~gD~fvvP~w--------------~~h~~~n 339 (368)
T 3nw4_A 281 CEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGET-----TKLEKGDMFVVPSW--------------VPWSLQA 339 (368)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTEE-----EEECTTCEEEECTT--------------CCEEEEE
T ss_pred hheEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCEE-----EEecCCCEEEECCC--------------CcEEEEe
Confidence 3345577777665444567789999999988766 3333 67899999854443 2567788
Q ss_pred ccceeEEEecHHHHHHH
Q 010766 367 LTEVEAFSLMADDLKSV 383 (502)
Q Consensus 367 ~~~~~l~~i~~~~f~~l 383 (502)
.+++.++.++-.-+.+-
T Consensus 340 ~~~a~Lf~~~D~Pl~~~ 356 (368)
T 3nw4_A 340 ETQFDLFRFSDAPIMEA 356 (368)
T ss_dssp SSSEEEEEEESHHHHHH
T ss_pred CCCEEEEEEeCHHHHHH
Confidence 89999999987766554
No 111
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=36.92 E-value=38 Score=28.52 Aligned_cols=50 Identities=8% Similarity=-0.039 Sum_probs=31.9
Q ss_pred ceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCc-----eeeeeEeEEeCCCCee
Q 010766 288 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGG-----RTGFFNAVYLKAGDFC 340 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~-----~e~~~~i~~l~~G~~f 340 (502)
....++||..+-..--...++++|++|.+.+...+.+ +.. ...+.+||++
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i 98 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTF 98 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEE
Confidence 3445677765422212346799999999998876522 111 2678999976
No 112
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=36.18 E-value=12 Score=29.25 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=29.7
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCC
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~ 476 (502)
+..+++.+++. ..+++..+|..+|+++.+|+|+-|+..+
T Consensus 9 ~~~~~i~~~~~--~~~~~~~lA~~~~~S~~~l~r~fk~~~G 47 (108)
T 3oou_A 9 NVLSYITEHFS--EGMSLKTLGNDFHINAVYLGQLFQKEMG 47 (108)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 44556666554 3688999999999999999998766544
No 113
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=36.14 E-value=17 Score=28.68 Aligned_cols=40 Identities=10% Similarity=-0.048 Sum_probs=30.7
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCCC
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSSG 477 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~~ 477 (502)
+..+++.+++. ..+++..+|..+|+++.+|+|+-|+..+.
T Consensus 11 ~~~~~i~~~~~--~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 50 (113)
T 3oio_A 11 EAVSLMEANIE--EPLSTDDIAYYVGVSRRQLERLFKQYLGT 50 (113)
T ss_dssp HHHHHHHTCSS--SCCCHHHHHHHHTSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 44556666554 44889999999999999999997766554
No 114
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=35.99 E-value=37 Score=29.20 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=25.0
Q ss_pred CCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 303 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 303 e~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
-.++.++||++|.+.+... ++. ..+.+||+|-
T Consensus 108 h~gEE~~yVLeG~v~vtl~--g~~-----~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVC--KNK-----FLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEET--TEE-----EEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEEC--CEE-----EEEcCCCEEE
Confidence 3467899999999999873 333 6899999874
No 115
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=35.96 E-value=26 Score=27.05 Aligned_cols=69 Identities=9% Similarity=0.127 Sum_probs=40.5
Q ss_pred eCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcccee
Q 010766 292 YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALTEVE 371 (502)
Q Consensus 292 ~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~~~~ 371 (502)
..+|+.....-+...++++|++|.+.+...+ ++. ..+.+||.+---. +. .....+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~~-----~~l~~Gd~~~ip~------~~--------~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GGS-----MTIREGEMAVVPK------SV--------SHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SCE-----EEECTTEEEEECT------TC--------CEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-CcE-----EEECCCCEEEECC------CC--------cEeeEeCCCeE
Confidence 3455433233332379999999999987754 132 6799999873222 11 33445556788
Q ss_pred EEEecHHHH
Q 010766 372 AFSLMADDL 380 (502)
Q Consensus 372 l~~i~~~~f 380 (502)
++.++....
T Consensus 95 ~l~i~~~~~ 103 (107)
T 2i45_A 95 LVLIELSDP 103 (107)
T ss_dssp EEEEECC--
T ss_pred EEEEECCCc
Confidence 887765543
No 116
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=35.78 E-value=41 Score=28.42 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=28.8
Q ss_pred eeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 291 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 291 ~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
.+.||...-..--...++++|++|.+++.. +++. ..+.+||++
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~~-----~~l~~Gd~i 92 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GETI-----SDVAQGDLV 92 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTEE-----EEEETTCEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE--CCEE-----EEeCCCCEE
Confidence 345665443322335679999999999876 3333 678899977
No 117
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=35.62 E-value=38 Score=29.29 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=31.9
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
+....++||...-..--...++.+|++|.+++...+ |++ ..+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge~-----~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GAK-----RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GCE-----EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-CeE-----EEECCCCEE
Confidence 344556777643322233456889999999987643 332 679999998
No 118
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=35.56 E-value=39 Score=28.93 Aligned_cols=45 Identities=7% Similarity=-0.013 Sum_probs=29.7
Q ss_pred eeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 290 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 290 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
..+.||..+-..--...++++|++|.+++... ++. ..+.+||++-
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~--g~~-----~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVG--RAV-----SAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEET--TEE-----EEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEEC--CEE-----EEeCCCCEEE
Confidence 34556655433323356799999999998763 333 7789999773
No 119
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=35.47 E-value=71 Score=31.01 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=47.4
Q ss_pred eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEcc
Q 010766 289 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQALT 368 (502)
Q Consensus 289 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A~~ 368 (502)
...+++|..--..-.....+|+|++|..++.. +++. ..+.+||.|---.. ....+.+.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~~-----~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNET-----FSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTEE-----EEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCEE-----EEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 44667776554433455689999999999887 3433 78899998844332 134556668
Q ss_pred ceeEEEecHHHH
Q 010766 369 EVEAFSLMADDL 380 (502)
Q Consensus 369 ~~~l~~i~~~~f 380 (502)
++.++.+.-.-+
T Consensus 331 ~~~l~~~~d~p~ 342 (354)
T 2d40_A 331 DSVLFSFSDRPV 342 (354)
T ss_dssp EEEEEEEESHHH
T ss_pred CEEEEEEcCHHH
Confidence 888888865443
No 120
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=35.23 E-value=28 Score=28.01 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=30.8
Q ss_pred eeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 291 LYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 291 ~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
...||..-... +..+++++|++|.+.+...+ |.. ..+++||.|--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~~-----~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-ADP-----VKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETT-CCC-----EEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCC-CeE-----EEECCCCEEEE
Confidence 34556554444 23458999999999987654 543 67899998843
No 121
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=35.08 E-value=48 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=31.3
Q ss_pred ceeeeCCCCEEE--ecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 288 KPVLYTEKSFIV--REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 288 ~~~~~~~ge~I~--~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
....++||.... ..-...+++++|++|.+.+... +++ ..+.+||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~~-----~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QGE-----HPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TEE-----EEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CEE-----EEeCCCCEEE
Confidence 345567777442 2222336899999999998864 332 6789999763
No 122
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=34.68 E-value=78 Score=27.25 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=30.8
Q ss_pred eeeCCCCEEEe--cCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 290 VLYTEKSFIVR--EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 290 ~~~~~ge~I~~--~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
..++||...-. ......++++|++|.+.+... ++. ..+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~--~~~-----~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFD--EQW-----HELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEET--TEE-----EEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEEC--CEE-----EEeCCCCEE
Confidence 45677776542 123346899999999998763 333 689999987
No 123
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=34.24 E-value=40 Score=26.32 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=28.3
Q ss_pred eeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeE-EeCCCCee
Q 010766 290 VLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAV-YLKAGDFC 340 (502)
Q Consensus 290 ~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~-~l~~G~~f 340 (502)
..++||...-..--....+++|++|.+.+...+ +. . .+.+||++
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--~~-----~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLED--QE-----PHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETT--SC-----CEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECC--EE-----EEEeCCCCEE
Confidence 345566544211223567999999999987633 22 4 78999977
No 124
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=33.83 E-value=69 Score=28.78 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=29.0
Q ss_pred eCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 292 YTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 292 ~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
+.||...=.---+.+++|+|++|.++....++ + ...+++|+.+-
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRF 182 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEE
Confidence 34444432223457899999999998776433 2 26789999773
No 125
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=33.80 E-value=46 Score=27.88 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=31.1
Q ss_pred ceeeeCCCCE-E-EecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 288 KPVLYTEKSF-I-VREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 288 ~~~~~~~ge~-I-~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
....++||.. . ...-....++++|++|.+.+... +++ ..+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~--~~~-----~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTME--NDQ-----YPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEET--TEE-----EEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEEC--CEE-----EEeCCCCEE
Confidence 3455777763 2 11122467899999999998763 333 678999987
No 126
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=33.42 E-value=73 Score=28.86 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=35.1
Q ss_pred ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 286 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
.+....++||..+-..--....+++|++|.+++.. +++. ..+.+||.+
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~~-----~~l~~Gd~i 82 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDVT-----RKMTALESA 82 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTEE-----EEEETTTCE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCEE-----EEECCCCEE
Confidence 34455688998776554556789999999999887 3433 788999844
No 127
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=32.97 E-value=44 Score=26.67 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=30.0
Q ss_pred eeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 289 PVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 289 ~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
...++||...-..--...++++|++|.+++... +++ ..+.+||++
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i 96 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QGE-----ETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SCE-----EEEETTEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CEE-----EEECCCCEE
Confidence 344566655433333467899999999988763 322 678899877
No 128
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=32.54 E-value=60 Score=29.58 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=36.5
Q ss_pred ccceeeeCCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechh
Q 010766 286 HLKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEA 343 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~ 343 (502)
.+....++||..+=. .--...+.++|++|...+.. +++. ..+.+||++---
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~~-----~~l~~GD~~~~~ 217 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EENY-----YPVTAGDIIWMG 217 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTEE-----EEEETTCEEEEC
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCEE-----EEcCCCCEEEEC
Confidence 455667889887653 33446689999999998776 3443 789999987433
No 129
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=32.14 E-value=95 Score=27.16 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=34.9
Q ss_pred cceeeeCCCCEEEecC-CCcCeEEEEEeeEEEEEEecC----ceeeeeEeEEeCCCCeec
Q 010766 287 LKPVLYTEKSFIVREG-DPVEEMLFVMRGNLVSTTTYG----GRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~G-e~~~~lyfI~~G~v~~~~~~~----~~e~~~~i~~l~~G~~fG 341 (502)
+....+.||...-..- ....++++|++|.+++...++ ++. ....+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~---~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL---YSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE---EEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE---EEEEECCCCEEE
Confidence 4455678887654332 335799999999999876433 331 137899999873
No 130
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=31.86 E-value=15 Score=29.25 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhcc
Q 010766 430 LQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 430 ~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~ 473 (502)
+-.++.++.+++.++|+-....+...+|...|+++-+.+|.=|+
T Consensus 19 ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 19 LPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp SCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHH
Confidence 55778899999999999999999999999999999999997443
No 131
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=31.51 E-value=68 Score=25.33 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=29.1
Q ss_pred ceeeeCCCCEEE--ecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 288 KPVLYTEKSFIV--REGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 288 ~~~~~~~ge~I~--~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
....++||..+- ..-+..+.+|+|++|.+.+... ++. ..+.+||++
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~--~~~-----~~l~~Gd~i 76 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID--GEK-----IELQAGDWL 76 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET--TEE-----EEEETTEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC--CEE-----EEeCCCCEE
Confidence 344567776542 2222234577799999998763 332 678899877
No 132
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=30.66 E-value=54 Score=32.74 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=37.6
Q ss_pred ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 286 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
.+....+.||..+...-...+++++|++|..++...+.+.. ....+.+||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~---~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR---DSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE---EEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC---eEEEecCCCEE
Confidence 35567789998776665557799999999999875333322 13789999987
No 133
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=30.02 E-value=51 Score=25.81 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 303 DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 303 e~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
...+++++|++|.+++...++.. ...+.+||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 35668999999999988754321 15689999773
No 134
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=29.99 E-value=58 Score=32.68 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=38.9
Q ss_pred hccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 285 DHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 285 ~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
-.+....+.||..+...-..++++++|++|...+...+.+.. ....+.+||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~---~~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR---DSYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE---EEEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC---EEEEeCCCCEEE
Confidence 345667789998887665556799999999998875433322 237789999873
No 135
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=29.80 E-value=51 Score=32.64 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=48.3
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQA 366 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~A 366 (502)
+....++||+..-..--....+|||++|...+.. +|++ ..+++||+|-.-.. ....+..
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge~-----~~~~~GD~~~iP~g--------------~~H~~~N 354 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGKR-----FDWSEHDIFCVPAW--------------TWHEHCN 354 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTEE-----EEECTTCEEEECTT--------------CCEEEEE
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCEE-----EEEeCCCEEEECCC--------------CeEEeEe
Confidence 3556678888775554456789999999985544 4443 78899999854332 0223333
Q ss_pred ---ccceeEEEecHHHHHH
Q 010766 367 ---LTEVEAFSLMADDLKS 382 (502)
Q Consensus 367 ---~~~~~l~~i~~~~f~~ 382 (502)
.+++.++.++..-+.+
T Consensus 355 ~g~~e~~~ll~i~D~Pl~~ 373 (394)
T 3bu7_A 355 TQERDDACLFSFNDFPVME 373 (394)
T ss_dssp CCSSCCEEEEEEESHHHHH
T ss_pred CCCCCCeEEEEeeCHHHHH
Confidence 3567788776555444
No 136
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=29.60 E-value=29 Score=28.19 Aligned_cols=31 Identities=23% Similarity=0.151 Sum_probs=26.4
Q ss_pred ccccchhhhHhHHhhhhhchhhhhccCCCCC
Q 010766 448 LTSLGATMYASKFAANLLHPLRLRQNGSSGT 478 (502)
Q Consensus 448 ~~~ip~~~iASylGi~~~~lsrir~~~~~~~ 478 (502)
...+++..+|..+|+++.+++|+-|+..+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 4568899999999999999999988776654
No 137
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=29.42 E-value=27 Score=27.78 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=30.1
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNG 474 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~ 474 (502)
++..+++.+++. ..+.+..+|..+|+++.+|+|+-|+.
T Consensus 10 ~~~~~~i~~~~~--~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 10 TRVCTVINNNIA--HEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp HHHHHHHHTSTT--SCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--CCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 355666666654 36889999999999999999997764
No 138
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=29.42 E-value=74 Score=27.91 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=45.1
Q ss_pred ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 010766 286 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRTVQ 365 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~v~ 365 (502)
.+....++||..+-...-.+.++.+|++|.++ ++. ..+.+|+++=.-. . +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~p~-------g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIADQ-------E-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEECS-------S-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEeCc-------C-------CccCCE
Confidence 45677789999998887788899999999965 221 4578888763222 1 133455
Q ss_pred E--ccceeEEEe
Q 010766 366 A--LTEVEAFSL 375 (502)
Q Consensus 366 A--~~~~~l~~i 375 (502)
+ .+.|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 678887764
No 139
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=29.07 E-value=1.3e+02 Score=27.13 Aligned_cols=47 Identities=17% Similarity=0.015 Sum_probs=33.4
Q ss_pred eeeeCC-CCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 289 PVLYTE-KSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 289 ~~~~~~-ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
...++| |..+-..--....+++|++|.+.+... +++ ..+.+||.+--
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i~i 196 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GCT-----VEMKFGTAYFC 196 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TEE-----EEECTTCEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CEE-----EEECCCCEEEE
Confidence 445788 776654444457899999999998763 332 67999998743
No 140
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=28.98 E-value=24 Score=27.84 Aligned_cols=44 Identities=9% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhc
Q 010766 429 SLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 429 ~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~ 472 (502)
.+..++.++.+++.++|+-....+...+|...|.++-+.+|.=|
T Consensus 14 ~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~k 57 (107)
T 3iwf_A 14 YFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp GSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999733
No 141
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=28.36 E-value=90 Score=25.69 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=31.2
Q ss_pred ceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 288 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
....++||..+-..--...++++|++|.+.+...+. + ...+.+||++-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~--~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGK--P----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTS--C----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECCE--E----EEEECCCCEEE
Confidence 344567777653222234689999999999876432 1 15688998773
No 142
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=28.31 E-value=58 Score=28.08 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhccccccccchhhhHhHHhhhhhch
Q 010766 428 QSLQEAEDRLQDALATEAGALTSLGATMYASKFAANLLHP 467 (502)
Q Consensus 428 ~~~~~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~l 467 (502)
.+...|.+.|-+-...|...+...|...+|+-+|.++...
T Consensus 117 nrIa~ARr~YN~aV~~yN~~i~~FP~~ivA~l~gf~~~~~ 156 (171)
T 2etd_A 117 NRIAVARRDYNEAVXXYNTAIXXFPGVIFAXMFGFEEXQY 156 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----------CCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCcHHHHHHHhCCCCCch
Confidence 3667778889999999988888999999999999876553
No 143
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=27.77 E-value=71 Score=32.17 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=37.4
Q ss_pred ccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 286 HLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 286 ~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
.+....++||..+...--.++++++|++|.+++...+.+... ...+.+||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 445567899987766544567999999999988753322221 37899999873
No 144
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=27.61 E-value=96 Score=30.19 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=35.4
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEec-CceeeeeEeEEeCCCCee
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~-~~~e~~~~i~~l~~G~~f 340 (502)
+....+.||...-..--...++.+|++|.+++...+ +|+.. ...+.+||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEE
Confidence 444567888865433223689999999999988755 45531 2578999977
No 145
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=27.49 E-value=45 Score=33.04 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=34.3
Q ss_pred ceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 288 KPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 288 ~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
....++||+.+-..--...++|||++|.-..... +|++ ..+++||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~~-----~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGHK-----VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTEE-----EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCEE-----EEEcCCCEEEE
Confidence 6667888888755443456899999998654333 4543 67899998843
No 146
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=27.43 E-value=1.2e+02 Score=29.55 Aligned_cols=53 Identities=17% Similarity=0.099 Sum_probs=35.7
Q ss_pred cceeeeCCCCEEEecCCCc-CeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeech
Q 010766 287 LKPVLYTEKSFIVREGDPV-EEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~-~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fGe 342 (502)
+....++||...-..--.. .++++|++|.+++... .+|+.. ...+.+||++--
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~i 313 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGYV 313 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEEE
Confidence 4445678887764433334 7999999999998764 344321 367899998743
No 147
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=26.95 E-value=1.1e+02 Score=29.37 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=35.0
Q ss_pred cceeeeCCCCEEEec-CCCcCeEEEEEeeEEEEEEec-CceeeeeEeEEeCCCCeec
Q 010766 287 LKPVLYTEKSFIVRE-GDPVEEMLFVMRGNLVSTTTY-GGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~-Ge~~~~lyfI~~G~v~~~~~~-~~~e~~~~i~~l~~G~~fG 341 (502)
+....+.||...-.. -....++++|++|.+++...+ +|+.. ...+.+||++-
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 335557788765333 233789999999999988644 34321 26899999773
No 148
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=26.82 E-value=52 Score=26.64 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=21.9
Q ss_pred cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 305 VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 305 ~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
..++.+|++|.+.+....+++. ..+.+||++
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~~~-----~~l~~Gd~~ 89 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQGRT-----EEVGPGEAI 89 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGTEE-----EEECTTCEE
T ss_pred CceEEEEEEeEEEEEEeECCEE-----EEECCCCEE
Confidence 4456789999999873233433 778999976
No 149
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.30 E-value=25 Score=27.02 Aligned_cols=41 Identities=5% Similarity=-0.015 Sum_probs=29.2
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~ 476 (502)
++..+++.+++. ...+++..+|..+|+++.+|+|+-|+..+
T Consensus 5 ~~i~~~i~~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 5 ELIQNIIEESYT-DSQFTLSVLSEKLDLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHTT-CTTCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 345555555432 12678899999999999999998666543
No 150
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=26.06 E-value=34 Score=25.80 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=20.8
Q ss_pred ccchhhhHhHHhhhhhchhhhhcc
Q 010766 450 SLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 450 ~ip~~~iASylGi~~~~lsrir~~ 473 (502)
.+.+..+|..+|+++.+++||.+.
T Consensus 37 glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 37 DMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 578889999999999999998774
No 151
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=25.72 E-value=53 Score=26.99 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=31.1
Q ss_pred HHHHHHHhh-ccccccccchhhhHhHHh-----hhhhchhhhhccC
Q 010766 435 DRLQDALAT-EAGALTSLGATMYASKFA-----ANLLHPLRLRQNG 474 (502)
Q Consensus 435 ery~~ll~~-~p~~~~~ip~~~iASylG-----i~~~~lsrir~~~ 474 (502)
+|+..+.+. +|.....+.+..+|..+| ++...+|+|++-.
T Consensus 10 ~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~G~ 55 (135)
T 3r1f_A 10 ARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGN 55 (135)
T ss_dssp HHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHCCC
Confidence 567777665 455556689999999999 9999999997743
No 152
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=25.67 E-value=1e+02 Score=28.60 Aligned_cols=50 Identities=28% Similarity=0.311 Sum_probs=36.9
Q ss_pred hccceeeeCCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 285 DHLKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 285 ~~~~~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
..+....++||..+-. +-....+.++|++|...+.. +|+. ..+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~~-----~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQDW-----VEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTEE-----EEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEE
Confidence 4466677899998864 44445588999999998765 3433 7899999873
No 153
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=25.64 E-value=43 Score=27.80 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=33.7
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
+....++||..+-...-.....++|++|..+. ..|... .-..+++|+++-.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~--~~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAA--GGDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGG--TSEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEe--cceEeCCCEEEEE
Confidence 55677889988866555567789999999883 222221 0146778887643
No 154
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=24.77 E-value=1.1e+02 Score=28.34 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=33.6
Q ss_pred cceeeeCCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 287 LKPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 287 ~~~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
+....+.||..+-. .--...++++|++|.+.+... ++. ..+.+||++-
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~--~~~-----~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLD--NEW-----YPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEET--TEE-----EEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEEC--CEE-----EEECCCCEEE
Confidence 34456788876633 223467899999999998763 333 6789999873
No 155
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.99 E-value=47 Score=23.47 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhc
Q 010766 434 EDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 434 ~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~ 472 (502)
++++.+++.+.+ ..++...||..||++..+..|+-+
T Consensus 12 ~~~IL~~L~~~~---~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 12 EQKILQVLSDDG---GPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp HHHHHHHHHHHC---SCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 456777776543 347899999999999999998743
No 156
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=23.89 E-value=40 Score=24.68 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=21.1
Q ss_pred ccchhhhHhHHhhhhhchhhhhcc
Q 010766 450 SLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 450 ~ip~~~iASylGi~~~~lsrir~~ 473 (502)
.+.+..+|..+|+++.++|++.+.
T Consensus 31 glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 31 GLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 577889999999999999998764
No 157
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=23.80 E-value=59 Score=26.25 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=30.1
Q ss_pred HHHHHHHhh-ccccccccchhhhHhHHh-----hhhhchhhhhccC
Q 010766 435 DRLQDALAT-EAGALTSLGATMYASKFA-----ANLLHPLRLRQNG 474 (502)
Q Consensus 435 ery~~ll~~-~p~~~~~ip~~~iASylG-----i~~~~lsrir~~~ 474 (502)
+|+..+.+. +|.....+.+..+|..+| ++...+|.|++-.
T Consensus 8 ~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~ 53 (123)
T 3qwg_A 8 ARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGN 53 (123)
T ss_dssp HHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcCC
Confidence 466666664 355555688999999999 9999999987743
No 158
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=23.27 E-value=27 Score=26.84 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=30.9
Q ss_pred cceeeeCCCCEEEecC-CCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 287 LKPVLYTEKSFIVREG-DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~G-e~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
++...++||+-+=..- ......|+|.+|.+++...++... ...+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 3445678888774433 334467888899998876544322 2567888765
No 159
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=23.21 E-value=43 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhcc
Q 010766 433 AEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 433 a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~ 473 (502)
+..++..+++ -+.|..+|-..||++.++|.|-+.
T Consensus 22 ~~~kLK~il~-------GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 22 VRNALKDLLK-------DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp HHHHHHHHHT-------TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred HHHHHHHHHH-------hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 3445555555 566789999999999999999663
No 160
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=22.93 E-value=29 Score=26.90 Aligned_cols=40 Identities=5% Similarity=-0.055 Sum_probs=29.2
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCC
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~ 476 (502)
+..+.+.+++. ...+++..+|..+|+++.+++|+-|+..+
T Consensus 7 ~~~~~i~~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 46 (107)
T 2k9s_A 7 EACQYISDHLA-DSNFDIASVAQHVCLSPSRLSHLFRQQLG 46 (107)
T ss_dssp HHHHHHHHTSS-CSSCCHHHHHHHTTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc-cCCCCHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 34455555543 14678999999999999999998766544
No 161
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=22.19 E-value=58 Score=33.33 Aligned_cols=90 Identities=12% Similarity=0.008 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHHHhhcccCCCcc--ccCChhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 010766 135 DFPKKFFYCFWWGLRNLSSLGQNLK--TSTFVGEVFFAIFISISGLV-----------LFALLIGNMQKYLESTTVRLEE 201 (502)
Q Consensus 135 ~~~~~Yl~slYwa~~t~ttvGyGdi--~p~~~~E~~~~i~~~~~g~~-----------~~a~ii~~i~~i~~~~~~~~~~ 201 (502)
++.++-..|++-+++..||.||... ..-+..-.++.+++|++|+. -+..++..+...+......+.
T Consensus 302 ~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P~~- 380 (494)
T 3pjz_A 302 SPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHPRA- 380 (494)
T ss_dssp SHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCSSS-
T ss_pred CHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCCCc-
Confidence 4677888899999999999999844 33334445677777888732 222233222222211100000
Q ss_pred HHHHhHhHHHHhhhccCchhHHHHHHHHHH
Q 010766 202 MRVKRQDAEQWMSHRMLPENLRDRIRRYEQ 231 (502)
Q Consensus 202 ~~~~~~~i~~~m~~~~l~~~l~~rv~~y~~ 231 (502)
...--+.++.+|++..+++-.++-
T Consensus 381 ------v~~v~~~~r~i~~~~v~~~~~~~~ 404 (494)
T 3pjz_A 381 ------VYTIKVGGSALPQRVVDAVWGFFS 404 (494)
T ss_dssp ------CCCCCSSSCCCTTTHHHHHHHHHH
T ss_pred ------ceeeeECCEECCHHHHHHHHHHHH
Confidence 001123568899999999887653
No 162
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=21.86 E-value=1.3e+02 Score=24.57 Aligned_cols=51 Identities=10% Similarity=-0.175 Sum_probs=30.6
Q ss_pred eeeeCCCCEEEecC-CCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 289 PVLYTEKSFIVREG-DPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 289 ~~~~~~ge~I~~~G-e~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
...++||..+-..- ...+.+++|++|.+.+...+...... ....+.+||++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~-~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLH-FQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCC-EEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccce-eeEEECCCCEE
Confidence 34567776543222 22458999999999988754321000 01578899876
No 163
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=21.81 E-value=1.5e+02 Score=27.93 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=33.1
Q ss_pred ceeeeCCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeec
Q 010766 288 KPVLYTEKSFIVR-EGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 288 ~~~~~~~ge~I~~-~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fG 341 (502)
......||...-. .-+..+++++|++|.+++.. +++. ..+.+||++-
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~--~~~~-----~~l~~Gd~~~ 96 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL--DGER-----YLLISGDYAN 96 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE--CCEE-----EEECCCCEEE
Confidence 3445788876533 23337899999999999876 3433 6799999873
No 164
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=21.78 E-value=54 Score=18.28 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCC
Q 010766 486 PPLIPQKPAEPD 497 (502)
Q Consensus 486 ~~~~~~~~~~~~ 497 (502)
||-|||++.-|+
T Consensus 2 ~PG~P~P~LPpR 13 (26)
T 1wa7_B 2 DPGMPTPPLPPR 13 (26)
T ss_dssp CCCCCCCCCCCC
T ss_pred CCCCCCCCCCCC
Confidence 455666555554
No 165
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=21.75 E-value=78 Score=30.95 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=34.9
Q ss_pred cceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeech
Q 010766 287 LKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGE 342 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe 342 (502)
+....+.||+..-..--....+|||++|.-..+.. +|++ ..+++||+|--
T Consensus 105 a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v-dG~~-----~~~~~GD~v~i 154 (368)
T 3nw4_A 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV-NGDP-----VRMSRGDLLLT 154 (368)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEE-TTEE-----EEEETTCEEEE
T ss_pred EEEEEECCCCccCceecccceEEEEEecceEEEEE-CCEE-----EEEeCCCEEEE
Confidence 44566888888765554567999999998742333 4444 67899998843
No 166
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=21.48 E-value=26 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.1
Q ss_pred cchhhhHhHHhhhhhchhhhhcc
Q 010766 451 LGATMYASKFAANLLHPLRLRQN 473 (502)
Q Consensus 451 ip~~~iASylGi~~~~lsrir~~ 473 (502)
+..+.+|.+||+++.++-|-+++
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 45678999999999999998875
No 167
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.36 E-value=1.6e+02 Score=28.13 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=35.5
Q ss_pred cceeeeCCCCEEEecCCC-cCeEEEEEeeEEEEEEe-cCceeeeeEeEEeCCCCeec
Q 010766 287 LKPVLYTEKSFIVREGDP-VEEMLFVMRGNLVSTTT-YGGRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 287 ~~~~~~~~ge~I~~~Ge~-~~~lyfI~~G~v~~~~~-~~~~e~~~~i~~l~~G~~fG 341 (502)
+....++||..+-..--. ..++++|++|.+++... .+|+. ....+.+||+|-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~---~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA---SVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE---EEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE---EEEEECCCCEEE
Confidence 445567888876433223 37999999999998753 24441 137899999884
No 168
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=21.06 E-value=2.5e+02 Score=26.23 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=76.8
Q ss_pred cCchhHHHHHHHHHHHHHHhhcCCCHHHHHhcC-----------ChHHHHHHHHHHHHHHhcc--CcCccCCCHHHHHHH
Q 010766 217 MLPENLRDRIRRYEQYKWQETRGVEEEGLLRNL-----------PKDLRRDIKRHLCWDLLMR--VPMFEKMDDQLLDAM 283 (502)
Q Consensus 217 ~l~~~l~~rv~~y~~~~~~~~~~~~~~~il~~L-----------p~~Lr~~i~~~~~~~~l~~--~~~F~~ls~~~l~~l 283 (502)
+|-.++..-+.+||.-.-.++-.-...+++... |-+|++-+..+. .++-+. +.+|.. .
T Consensus 136 dl~~ql~~~~~~f~~~~~~rtc~p~~~~~~~~~p~~~~~~~~~~pf~Lk~Wl~~h~-~ei~s~~~~sLFg~-~------- 206 (286)
T 2qnk_A 136 DLGTQLAPIIQEFFSSEQYRTGKPIPDQLLKEPPFPLSTRSIMEPMSLDAWLDSHH-RELQAGTPLSLFGD-T------- 206 (286)
T ss_dssp SHHHHHHHHHHHHHTSHHHHHSCCCGGGSCSSCSSCCCCCCCCCCEEHHHHHHHTH-HHHHTTCCEESSCT-T-------
T ss_pred chHHhhHHHHHHHhcCcccccCCCChhhcccCCCCCCccccccCCcCHHHHHHhhh-HHHhcCCccccccC-C-------
Confidence 344556666666765444443333344444433 345554443332 222222 235532 0
Q ss_pred HhccceeeeCCCCEEEecCCCcCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCeechhhhhhhcCCCCCCCCCCcccE
Q 010766 284 CDHLKPVLYTEKSFIVREGDPVEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFCGEALLTWALDPQSSSNRPLSTRT 363 (502)
Q Consensus 284 ~~~~~~~~~~~ge~I~~~Ge~~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~~~~~~~~ 363 (502)
-..+...|.+|+.+..+... +..+.+++|...+.. ++++ ..|.+||..-- .+. ..+.
T Consensus 207 -~eteV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~--~~q~-----~~L~~~DsLLI-------pa~-------~~y~ 263 (286)
T 2qnk_A 207 -YETQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM--GGRR-----LSLAPDDSLLV-------LAG-------TSYA 263 (286)
T ss_dssp -SSEEEEEECSEEEEECCCSS-CEEEEEEESCEEEEE--TTEE-----EEECTTEEEEE-------CTT-------CCEE
T ss_pred -CceEEEEEcCCccccccCcC-cEEEEEEcCceEEEE--CCeE-----EeccCCCEEEe-------cCC-------CeEE
Confidence 12455669999999999888 999999999986554 3333 67888886522 222 2778
Q ss_pred EEEccceeEEEecH
Q 010766 364 VQALTEVEAFSLMA 377 (502)
Q Consensus 364 v~A~~~~~l~~i~~ 377 (502)
..+.++|.++.+..
T Consensus 264 ~~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 264 WERTQGSVALSVTQ 277 (286)
T ss_dssp EEECTTCEEEEEEE
T ss_pred EEecCCeEEEEEEE
Confidence 99999999998754
No 169
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.02 E-value=75 Score=23.17 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhh
Q 010766 432 EAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRL 470 (502)
Q Consensus 432 ~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsri 470 (502)
+.++++..++.+.++ -.+++...||..||++..+..|.
T Consensus 14 ~~~~~IL~~L~~~~~-~~~~t~~eLA~~Lgvs~~tV~~~ 51 (77)
T 1qgp_A 14 DQEQRILKFLEELGE-GKATTAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp HHHHHHHHHHHHHCS-SSCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCCcCHHHHHHHHCcCHHHHHHH
Confidence 335677788887774 45689999999999998776654
No 170
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.63 E-value=36 Score=27.49 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=30.2
Q ss_pred HHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhccCCC
Q 010766 435 DRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQNGSS 476 (502)
Q Consensus 435 ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~~~~~ 476 (502)
++..+++.+++. ..+.+..+|..+|+++.+|+|+-|+..+
T Consensus 14 ~~~~~~i~~~~~--~~~sl~~lA~~~~~S~~~l~r~fk~~~G 53 (129)
T 1bl0_A 14 HSILDWIEDNLE--SPLSLEKVSERSGYSKWHLQRMFKKETG 53 (129)
T ss_dssp HHHHHHHHTTTT--SCCCCHHHHHHSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccC--CCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 345566666554 3488999999999999999998766544
No 171
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=20.53 E-value=2.1e+02 Score=29.18 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHHhccceeeeCCCCEEEecC-CCcCeEEEEEeeEEEEEEecC-ceeeeeEeEEeCCCCeec
Q 010766 280 LDAMCDHLKPVLYTEKSFIVREG-DPVEEMLFVMRGNLVSTTTYG-GRTGFFNAVYLKAGDFCG 341 (502)
Q Consensus 280 l~~l~~~~~~~~~~~ge~I~~~G-e~~~~lyfI~~G~v~~~~~~~-~~e~~~~i~~l~~G~~fG 341 (502)
+..+-..+....+.||..+-..= ..++++++|++|.+++...+. |+.. ....+.+||+|-
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~--~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAV--FDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEE--EEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEE--EeEEEcCCCEEE
Confidence 44454567777788888664432 336799999999999876443 3331 125699999883
No 172
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=20.42 E-value=1.3e+02 Score=23.72 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=23.3
Q ss_pred HHHHHHhhccccccccchhhhHhHHhhhhhchhhhh
Q 010766 436 RLQDALATEAGALTSLGATMYASKFAANLLHPLRLR 471 (502)
Q Consensus 436 ry~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir 471 (502)
++...+...+ ......||..||+++.++||.=
T Consensus 46 ~IL~~L~~~~----~~s~~eLa~~l~is~stvs~~L 77 (122)
T 1u2w_A 46 KITYALCQDE----ELCVCDIANILGVTIANASHHL 77 (122)
T ss_dssp HHHHHHHHSS----CEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCC----CcCHHHHHHHHCcCHHHHHHHH
Confidence 4455554332 2678899999999999999863
No 173
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=20.28 E-value=1.2e+02 Score=24.64 Aligned_cols=37 Identities=3% Similarity=-0.005 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhccccccccchhhhHhHHhhhhhchhhhhc
Q 010766 432 EAEDRLQDALATEAGALTSLGATMYASKFAANLLHPLRLRQ 472 (502)
Q Consensus 432 ~a~ery~~ll~~~p~~~~~ip~~~iASylGi~~~~lsrir~ 472 (502)
.++-++...+...|+ +++..||..+|+++.+.||+=+
T Consensus 41 ~~~~~iL~~l~~~~~----~t~~eLa~~l~~~~~tvs~~l~ 77 (154)
T 2qww_A 41 IQQLAMINVIYSTPG----ISVADLTKRLIITGSSAAANVD 77 (154)
T ss_dssp HHHHHHHHHHHHSTT----EEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CCHHHHHHHHCCCHHHHHHHHH
Confidence 344456666766554 7899999999999999999733
No 174
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=20.13 E-value=1.2e+02 Score=24.06 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=23.4
Q ss_pred cCeEEEEEeeEEEEEEecCceeeeeEeEEeCCCCee
Q 010766 305 VEEMLFVMRGNLVSTTTYGGRTGFFNAVYLKAGDFC 340 (502)
Q Consensus 305 ~~~lyfI~~G~v~~~~~~~~~e~~~~i~~l~~G~~f 340 (502)
..++++|++|.+.+...++ +. ..+.+||++
T Consensus 64 ~~E~~~vl~G~~~~~~~~~-~~-----~~l~~Gd~~ 93 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYEDI-GA-----VMLEAGGSA 93 (134)
T ss_dssp SCEEEEEEESEEEEEETTT-EE-----EEEETTCEE
T ss_pred CcEEEEEEeCEEEEEECCc-EE-----EEecCCCEE
Confidence 3789999999999877442 33 678999977
Done!