Query 010767
Match_columns 502
No_of_seqs 282 out of 1452
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 1.2E-31 2.6E-36 262.0 4.6 105 101-220 7-112 (238)
2 PLN03212 Transcription repress 100.0 2E-30 4.4E-35 254.3 5.2 122 76-220 7-128 (249)
3 PLN03091 hypothetical protein; 100.0 4.4E-29 9.5E-34 260.3 5.0 115 91-219 2-116 (459)
4 PF13921 Myb_DNA-bind_6: Myb-l 99.6 2.3E-15 4.9E-20 117.3 5.5 60 106-175 1-60 (60)
5 KOG0049 Transcription factor, 99.5 6.5E-15 1.4E-19 159.3 4.7 97 96-205 353-449 (939)
6 KOG0049 Transcription factor, 99.4 2.5E-14 5.5E-19 154.8 1.6 105 101-219 303-410 (939)
7 COG5147 REB1 Myb superfamily p 99.4 1.7E-13 3.6E-18 147.5 2.6 109 97-220 14-122 (512)
8 PF00249 Myb_DNA-binding: Myb- 99.3 6.9E-13 1.5E-17 99.9 2.6 45 103-149 1-46 (48)
9 KOG0050 mRNA splicing protein 99.2 6.6E-13 1.4E-17 141.3 -1.1 103 101-219 5-107 (617)
10 KOG0051 RNA polymerase I termi 99.1 3.7E-11 8E-16 131.0 5.0 109 102-220 383-512 (607)
11 smart00717 SANT SANT SWI3, AD 99.0 3.3E-10 7.2E-15 82.0 4.2 46 103-150 1-46 (49)
12 PLN03091 hypothetical protein; 98.9 7.4E-10 1.6E-14 117.2 4.9 52 96-150 60-111 (459)
13 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 9.2E-10 2E-14 78.7 3.8 43 105-149 1-43 (45)
14 PLN03212 Transcription repress 98.9 4.5E-10 9.8E-15 111.5 1.9 50 97-149 72-121 (249)
15 PF00249 Myb_DNA-binding: Myb- 98.7 1.1E-09 2.3E-14 82.6 -1.4 46 164-214 1-47 (48)
16 smart00717 SANT SANT SWI3, AD 98.6 1.4E-08 3E-13 73.5 1.0 47 164-216 1-48 (49)
17 PF13921 Myb_DNA-bind_6: Myb-l 98.5 1.9E-08 4.1E-13 78.4 -0.3 48 167-220 1-48 (60)
18 KOG0048 Transcription factor, 98.5 8.6E-08 1.9E-12 94.5 4.0 51 96-149 55-105 (238)
19 cd00167 SANT 'SWI3, ADA2, N-Co 98.4 1.1E-07 2.3E-12 67.9 0.8 43 166-214 1-44 (45)
20 COG5147 REB1 Myb superfamily p 98.3 3.6E-07 7.9E-12 99.2 2.1 109 98-216 286-397 (512)
21 TIGR01557 myb_SHAQKYF myb-like 97.8 2.7E-05 5.8E-10 62.0 4.7 49 101-150 1-53 (57)
22 KOG0457 Histone acetyltransfer 97.4 0.00012 2.5E-09 78.2 3.4 48 101-150 70-117 (438)
23 KOG0051 RNA polymerase I termi 97.0 0.00047 1E-08 76.5 4.0 104 100-218 305-431 (607)
24 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00022 4.8E-09 59.0 0.7 56 103-158 1-71 (90)
25 COG5259 RSC8 RSC chromatin rem 96.4 0.0019 4.2E-08 69.7 2.7 46 102-150 278-323 (531)
26 PF08914 Myb_DNA-bind_2: Rap1 96.4 0.0029 6.3E-08 51.7 2.9 52 103-158 2-62 (65)
27 KOG1279 Chromatin remodeling f 95.9 0.0058 1.3E-07 67.1 3.6 57 99-158 249-305 (506)
28 PF13873 Myb_DNA-bind_5: Myb/S 95.9 0.011 2.3E-07 48.4 4.1 51 102-152 1-70 (78)
29 PF13325 MCRS_N: N-terminal re 95.7 0.0099 2.2E-07 58.3 3.6 110 105-220 1-131 (199)
30 KOG0050 mRNA splicing protein 95.6 0.005 1.1E-07 67.3 1.5 51 96-150 52-102 (617)
31 COG5114 Histone acetyltransfer 94.7 0.018 3.9E-07 60.1 2.3 46 103-150 63-108 (432)
32 TIGR02894 DNA_bind_RsfA transc 94.7 0.021 4.6E-07 54.4 2.5 47 101-150 2-54 (161)
33 KOG0457 Histone acetyltransfer 93.2 0.023 4.9E-07 61.2 -0.3 47 164-215 72-118 (438)
34 TIGR01557 myb_SHAQKYF myb-like 92.2 0.081 1.7E-06 42.2 1.6 43 164-212 3-51 (57)
35 PRK13923 putative spore coat p 92.1 0.077 1.7E-06 51.1 1.7 46 101-149 3-54 (170)
36 PF09111 SLIDE: SLIDE; InterP 92.1 0.092 2E-06 47.6 2.1 52 99-150 45-109 (118)
37 KOG4282 Transcription factor G 90.8 0.11 2.4E-06 53.8 1.4 56 103-158 54-120 (345)
38 PF08914 Myb_DNA-bind_2: Rap1 90.5 0.046 1E-06 44.7 -1.4 55 164-219 2-61 (65)
39 PF12776 Myb_DNA-bind_3: Myb/S 90.0 0.33 7.1E-06 40.7 3.4 48 105-152 1-63 (96)
40 TIGR02894 DNA_bind_RsfA transc 85.4 0.22 4.7E-06 47.6 -0.5 55 164-220 4-60 (161)
41 PF13325 MCRS_N: N-terminal re 84.1 0.86 1.9E-05 45.0 3.0 51 101-151 71-126 (199)
42 COG5118 BDP1 Transcription ini 83.4 1.2 2.7E-05 47.8 4.0 75 95-172 357-432 (507)
43 KOG2656 DNA methyltransferase 83.3 1 2.2E-05 48.5 3.3 49 103-152 130-182 (445)
44 PLN03142 Probable chromatin-re 78.2 2 4.3E-05 51.5 3.7 52 101-152 924-985 (1033)
45 KOG1279 Chromatin remodeling f 78.1 1.7 3.6E-05 48.4 2.9 50 161-216 250-299 (506)
46 COG5259 RSC8 RSC chromatin rem 75.6 1 2.2E-05 49.4 0.5 44 164-213 279-322 (531)
47 COG5114 Histone acetyltransfer 75.3 1.1 2.4E-05 47.3 0.6 45 165-214 64-108 (432)
48 PF13837 Myb_DNA-bind_4: Myb/S 73.3 0.32 6.8E-06 40.2 -3.3 51 165-216 2-65 (90)
49 PLN03142 Probable chromatin-re 67.5 7.3 0.00016 46.9 5.1 106 103-215 824-984 (1033)
50 PF11626 Rap1_C: TRF2-interact 66.7 5.3 0.00011 34.0 2.7 16 99-114 43-58 (87)
51 PF13404 HTH_AsnC-type: AsnC-t 56.9 9.6 0.00021 28.5 2.3 39 109-150 3-41 (42)
52 KOG4167 Predicted DNA-binding 56.4 11 0.00024 43.7 3.7 44 103-149 619-662 (907)
53 PF12776 Myb_DNA-bind_3: Myb/S 53.5 4.2 9.1E-05 33.9 -0.1 48 166-213 1-60 (96)
54 PF07750 GcrA: GcrA cell cycle 51.3 47 0.001 31.7 6.6 37 166-209 2-38 (162)
55 PF13873 Myb_DNA-bind_5: Myb/S 49.9 4.7 0.0001 32.8 -0.3 50 164-214 2-68 (78)
56 PRK13923 putative spore coat p 47.0 2.7 5.8E-05 40.7 -2.5 54 164-219 5-60 (170)
57 KOG0384 Chromodomain-helicase 46.8 9.3 0.0002 46.6 1.3 65 102-181 1132-1196(1373)
58 PRK11179 DNA-binding transcrip 44.9 20 0.00044 33.0 2.9 40 108-150 8-47 (153)
59 PLN03162 golden-2 like transcr 39.8 82 0.0018 34.4 6.8 53 98-150 232-286 (526)
60 PF09111 SLIDE: SLIDE; InterP 39.7 21 0.00046 32.5 2.2 51 140-198 29-82 (118)
61 KOG1194 Predicted DNA-binding 38.5 42 0.00092 37.3 4.5 44 164-213 187-230 (534)
62 smart00595 MADF subfamily of S 38.0 13 0.00028 30.8 0.4 25 125-152 29-53 (89)
63 KOG2009 Transcription initiati 35.5 43 0.00094 38.2 4.2 53 95-150 401-453 (584)
64 COG5118 BDP1 Transcription ini 35.4 21 0.00046 38.8 1.7 46 165-216 366-411 (507)
65 PRK11169 leucine-responsive tr 35.0 27 0.00059 32.6 2.2 40 108-150 13-52 (164)
66 PF10545 MADF_DNA_bdg: Alcohol 31.5 18 0.0004 28.9 0.4 27 125-152 28-54 (85)
67 KOG4468 Polycomb-group transcr 30.0 1.3E+02 0.0028 34.8 6.6 47 103-150 88-142 (782)
68 PF04504 DUF573: Protein of un 25.8 72 0.0016 28.0 3.1 80 102-181 3-94 (98)
69 PF09420 Nop16: Ribosome bioge 23.3 1.3E+02 0.0029 28.4 4.6 48 101-149 112-161 (164)
70 PF11035 SnAPC_2_like: Small n 22.7 3E+02 0.0066 29.6 7.4 49 99-149 17-68 (344)
71 KOG2656 DNA methyltransferase 22.0 10 0.00022 41.1 -3.4 49 164-218 130-184 (445)
72 KOG1194 Predicted DNA-binding 20.6 1.1E+02 0.0023 34.3 3.8 48 100-150 184-231 (534)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=1.2e-31 Score=261.95 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=101.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccc-cCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHH
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAM 179 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~p-gRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav 179 (502)
+.||+||+|||++|+++|++||.++|..|++. .+ +|++++||.||.| ||+|+|+ ++.||.|||++|++++
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~--~gl~R~GKSCRlRW~N--yLrP~ik-----rg~fT~eEe~~Ii~lH 77 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKL--AGLRRCGKSCRLRWTN--YLRPDLK-----RGNFSDEEEDLIIKLH 77 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhh--cCCCccchHHHHHhhc--ccCCCcc-----CCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999998 45 9999999999999 9999999 9999999999999999
Q ss_pred HhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 180 SLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 180 ~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
.+ +|++ |+.||++|||||||. |||+|++++++++.
T Consensus 78 ~~---~GNr--Ws~IA~~LPGRTDNe-IKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 78 AL---LGNR--WSLIAGRLPGRTDNE-VKNHWNTHLKKKLL 112 (238)
T ss_pred HH---HCcH--HHHHHhhCCCcCHHH-HHHHHHHHHHHHHH
Confidence 99 9999 999999999999999 99999999998875
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.96 E-value=2e-30 Score=254.30 Aligned_cols=122 Identities=24% Similarity=0.320 Sum_probs=108.3
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCC
Q 010767 76 KVPLPAPTPEVLDANGLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHG 155 (502)
Q Consensus 76 kQ~~~~~S~d~~d~~g~~s~sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P 155 (502)
+.+++.-.+-+|++.|. ++++||+|||++|+++|++||..+|..||+.+ .++|+++|||+||.+ +|+|
T Consensus 7 ~~~~~~~~~pcc~K~gl---------KRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~-g~gRT~KQCReRW~N--~L~P 74 (249)
T PLN03212 7 KKPVSKKTTPCCTKMGM---------KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRA-GLLRCGKSCRLRWMN--YLRP 74 (249)
T ss_pred CCCCCCCCCCCcccCCC---------cCCCCCHHHHHHHHHHHHHhCcccHHHHHHhh-hcCCCcchHHHHHHH--hhch
Confidence 33333334556665555 89999999999999999999999999999872 369999999999999 9999
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 156 NVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 156 ~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
+|+ +++||.|||++|++++.. ||++ |+.||.+|||||+++ |||||+.++++.+.
T Consensus 75 ~I~-----kgpWT~EED~lLlel~~~---~GnK--Ws~IAk~LpGRTDnq-IKNRWns~LrK~l~ 128 (249)
T PLN03212 75 SVK-----RGGITSDEEDLILRLHRL---LGNR--WSLIAGRIPGRTDNE-IKNYWNTHLRKKLL 128 (249)
T ss_pred hcc-----cCCCChHHHHHHHHHHHh---cccc--HHHHHhhcCCCCHHH-HHHHHHHHHhHHHH
Confidence 999 999999999999999999 9999 999999999999999 99999999988753
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.95 E-value=4.4e-29 Score=260.26 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHH
Q 010767 91 GLIGGSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSE 170 (502)
Q Consensus 91 g~~s~sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~E 170 (502)
|...+.++.+.+|++||+|||++|+++|++||.++|..||+.+ .++|+++|||+||.+ +|+|.|+ +++||.|
T Consensus 2 gr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~-g~gRT~KQCRERW~N--yLdP~Ik-----KgpWT~E 73 (459)
T PLN03091 2 GRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA-GLQRCGKSCRLRWIN--YLRPDLK-----RGTFSQQ 73 (459)
T ss_pred CCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh-ccCcCcchHhHHHHh--ccCCccc-----CCCCCHH
Confidence 3445567888899999999999999999999999999999862 469999999999999 9999999 9999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCc
Q 010767 171 AQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 171 ED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~ 219 (502)
||++|++++.+ ||++ |++||.+|||||+++ |||||+.++++.+
T Consensus 74 ED~lLLeL~k~---~GnK--WskIAk~LPGRTDnq-IKNRWnslLKKkl 116 (459)
T PLN03091 74 EENLIIELHAV---LGNR--WSQIAAQLPGRTDNE-IKNLWNSCLKKKL 116 (459)
T ss_pred HHHHHHHHHHH---hCcc--hHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence 99999999999 9999 999999999999999 9999999988754
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.58 E-value=2.3e-15 Score=117.35 Aligned_cols=60 Identities=30% Similarity=0.484 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHH
Q 010767 106 WTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 175 (502)
Q Consensus 106 WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~L 175 (502)
||+|||++|+.+|.+|| .+|..||+. ++.|++.||++||.+ +|.|.++ +++||.+||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~--l~~Rt~~~~~~r~~~--~l~~~~~-----~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEH--LGNRTPKQCRNRWRN--HLRPKIS-----RGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHH--STTS-HHHHHHHHHH--TTSTTST-----SSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHH--HCcCCHHHHHHHHHH--HCccccc-----CCCcCHHHHhcC
Confidence 99999999999999999 799999997 666999999999999 8889999 999999999986
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.52 E-value=6.5e-15 Score=159.33 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=92.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHH
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 175 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~L 175 (502)
.+.+..++++||++||.+|+.+|.+||...|.+|-+. +|||+..|||+||.| .|+-..| .+.|+-.||+.|
T Consensus 353 ~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~--vPnRSdsQcR~RY~n--vL~~s~K-----~~rW~l~edeqL 423 (939)
T KOG0049|consen 353 TLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQA--VPNRSDSQCRERYTN--VLNRSAK-----VERWTLVEDEQL 423 (939)
T ss_pred ccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHh--cCCccHHHHHHHHHH--HHHHhhc-----cCceeecchHHH
Confidence 4789999999999999999999999999999999987 899999999999999 9999999 999999999999
Q ss_pred HHHHHhhcCCCCCCchHHHhhcCCCCCCCC
Q 010767 176 RHAMSLALDMPVKNITASCTNTTAGTTSSA 205 (502)
Q Consensus 176 leav~~al~~G~kk~Ws~IA~~LpGRTdn~ 205 (502)
+.+|.. ||.. .|.+||.+||.||..+
T Consensus 424 ~~~V~~---YG~g-~WakcA~~Lp~~t~~q 449 (939)
T KOG0049|consen 424 LYAVKV---YGKG-NWAKCAMLLPKKTSRQ 449 (939)
T ss_pred HHHHHH---Hccc-hHHHHHHHccccchhH
Confidence 999999 9987 8999999999999955
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.43 E-value=2.5e-14 Score=154.85 Aligned_cols=105 Identities=22% Similarity=0.248 Sum_probs=96.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---CccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHH
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEG---NWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 177 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~---nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lle 177 (502)
.+.+.||+|||.+|+++|++...+ +|++|-.+ |+||+..|+--||.. .|+|+|+ +|+||.+||.+|+.
T Consensus 303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Y--mpgr~~~qLI~R~~~--~LdPsik-----hg~wt~~ED~~L~~ 373 (939)
T KOG0049|consen 303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQY--MPGRTRQQLITRFSH--TLDPSVK-----HGRWTDQEDVLLVC 373 (939)
T ss_pred HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHh--cCCcchhhhhhhhee--ccCcccc-----CCCCCCHHHHHHHH
Confidence 356899999999999999988654 59999987 899999999999999 9999999 99999999999999
Q ss_pred HHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCc
Q 010767 178 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 178 av~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~ 219 (502)
+|.+ ||.+ .|.+|-..+|||++.| |+.||.+.|....
T Consensus 374 AV~~---Yg~k-dw~k~R~~vPnRSdsQ-cR~RY~nvL~~s~ 410 (939)
T KOG0049|consen 374 AVSR---YGAK-DWAKVRQAVPNRSDSQ-CRERYTNVLNRSA 410 (939)
T ss_pred HHHH---hCcc-chhhHHHhcCCccHHH-HHHHHHHHHHHhh
Confidence 9999 9887 8999999999999999 9999987776544
No 7
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.37 E-value=1.7e-13 Score=147.45 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHH
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 176 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Ll 176 (502)
+..+++.+.|+..||+.|..+|++||..+|..||.. +.-|+++||+.||++ +++|.++ +..|+.|||..|+
T Consensus 14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~--~~~~~~kq~~~rw~~--~lnp~lk-----~~~~~~eed~~li 84 (512)
T COG5147 14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASL--LISSTGKQSSNRWNN--HLNPQLK-----KKNWSEEEDEQLI 84 (512)
T ss_pred ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHH--hcccccccccchhhh--hhchhcc-----cccccHHHHHHHH
Confidence 345678899999999999999999999999999997 456999999999999 9999999 9999999999999
Q ss_pred HHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 177 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 177 eav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
++..+ +|.+ |+.|+..++|||..+ |.+||..++....+
T Consensus 85 ~l~~~---~~~~--wstia~~~d~rt~~~-~~ery~~~~~~~~s 122 (512)
T COG5147 85 DLDKE---LGTQ--WSTIADYKDRRTAQQ-CVERYVNTLEDLSS 122 (512)
T ss_pred HHHHh---cCch--hhhhccccCccchHH-HHHHHHHHhhhhhc
Confidence 99999 9999 999999999999999 99999977665443
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.32 E-value=6.9e-13 Score=99.94 Aligned_cols=45 Identities=44% Similarity=0.721 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccc-cCchhhhhHHHHh
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNI 149 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~p-gRT~kQCR~RW~n 149 (502)
|++||+|||++|+++|.+||.++|..||.. ++ +||..||++||++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~--~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR--MPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH--HSSSSTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH--cCCCCCHHHHHHHHHh
Confidence 689999999999999999997779999998 67 9999999999998
No 9
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.6e-13 Score=141.34 Aligned_cols=103 Identities=22% Similarity=0.227 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHH
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 180 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~ 180 (502)
++.+-|+.-||+.|..+|.+||.+.|.+|+.. +...+++||+.||.. +++|.|+ +..|+.|||++|+++.+
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sl--l~~kt~rqC~~rw~e--~ldp~i~-----~tews~eederlLhlak 75 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASL--LNRKTARQCKARWEE--WLDPAIK-----KTEWSREEDERLLHLAK 75 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHH--HhhcchhHHHHHHHH--HhCHHHh-----hhhhhhhHHHHHHHHHH
Confidence 46789999999999999999999999999997 688999999999998 9999999 99999999999999999
Q ss_pred hhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCc
Q 010767 181 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 181 ~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~ 219 (502)
+ ++.. |..|+..| |||.++ |-.||+.++-...
T Consensus 76 l---~p~q--wrtIa~i~-gr~~~q-c~eRy~~ll~~~~ 107 (617)
T KOG0050|consen 76 L---EPTQ--WRTIADIM-GRTSQQ-CLERYNNLLDVYV 107 (617)
T ss_pred h---cCCc--cchHHHHh-hhhHHH-HHHHHHHHHHHHH
Confidence 9 9999 99998876 999999 9888876665544
No 10
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.13 E-value=3.7e-11 Score=130.98 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=90.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHHh
Q 010767 102 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSL 181 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~~ 181 (502)
++|.||+||++.|..+|.++| +.|..|++. -||.+..||+||++|.+..-..+ ++.||.||++.|+++|+.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~---lgr~P~~crd~wr~~~~~g~~~~-----r~~Ws~eEe~~Llk~V~~ 453 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKA---LGRMPMDCRDRWRQYVKCGSKRN-----RGAWSIEEEEKLLKTVNE 453 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHH---HccCcHHHHHHHHHhhccccccc-----cCcchHHHHHHHHHHHHH
Confidence 899999999999999999999 999999987 39999999999999655544567 999999999999999962
Q ss_pred hc----CC------------C-----CCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 182 AL----DM------------P-----VKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 182 al----~~------------G-----~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
-+ -+ + ...+|+.|+..+..|+-.+ |+-+|+.++.....
T Consensus 454 ~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~q-Cr~Kw~kl~~~~s~ 512 (607)
T KOG0051|consen 454 MIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQ-CRYKWYKLTTSPSF 512 (607)
T ss_pred HHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcch-HHHHHHHHHhhHHh
Confidence 11 11 1 2236999999777788778 99999988866543
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.01 E-value=3.3e-10 Score=82.01 Aligned_cols=46 Identities=46% Similarity=0.723 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
++.||++||++|+.++.+||..+|..|+.. +++||+.+|++||.++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~--~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKE--LPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999998 7899999999999983
No 12
>PLN03091 hypothetical protein; Provisional
Probab=98.93 E-value=7.4e-10 Score=117.18 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
+|.+..++++||+|||++|++++.+|| .+|..||+. ++|||+.|||+||+.+
T Consensus 60 yLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~--LPGRTDnqIKNRWnsl 111 (459)
T PLN03091 60 YLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQ--LPGRTDNEIKNLWNSC 111 (459)
T ss_pred ccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHh--cCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999 799999987 8999999999999964
No 13
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.92 E-value=9.2e-10 Score=78.69 Aligned_cols=43 Identities=44% Similarity=0.767 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 105 PWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 105 ~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
+||+|||+.|+.++.+||.++|..|++. +++|+..||++||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~--~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE--LPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH--cCCCCHHHHHHHHHH
Confidence 5999999999999999999999999998 789999999999987
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.90 E-value=4.5e-10 Score=111.50 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
+.+..++++||+|||++|++++.+|| .+|..||+. ++|||..||++||+.
T Consensus 72 L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~--LpGRTDnqIKNRWns 121 (249)
T PLN03212 72 LRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGR--IPGRTDNEIKNYWNT 121 (249)
T ss_pred hchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhh--cCCCCHHHHHHHHHH
Confidence 78899999999999999999999999 889999987 899999999999997
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.73 E-value=1.1e-09 Score=82.61 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCC-CCCCCCccccCCCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTA-GTTSSATMNNPVPST 214 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~Lp-GRTdn~sIKNRw~s~ 214 (502)
+++||.|||++|++++.+ ||.+ +|..||.+|+ |||..+ |++||+.+
T Consensus 1 r~~Wt~eE~~~l~~~v~~---~g~~-~W~~Ia~~~~~~Rt~~q-c~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKK---YGKD-NWKKIAKRMPGGRTAKQ-CRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHH---STTT-HHHHHHHHHSSSSTHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCCc-HHHHHHHHcCCCCCHHH-HHHHHHhh
Confidence 478999999999999999 9887 8999999999 999999 99999764
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.59 E-value=1.4e-08 Score=73.50 Aligned_cols=47 Identities=9% Similarity=-0.022 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
+++||.+||.+|++++.. || .. |..|+..|++||..+ |++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~---~g~~~--w~~Ia~~~~~rt~~~-~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKK---YGKNN--WEKIAKELPGRTAEQ-CRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHcCCCCHHH-HHHHHHHHcC
Confidence 368999999999999999 99 78 999999999999999 9999987664
No 17
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.50 E-value=1.9e-08 Score=78.41 Aligned_cols=48 Identities=8% Similarity=-0.078 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 167 QLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 167 WT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
||.|||++|++++.. ||++ |..||.+|+.||..+ |++||+..|++...
T Consensus 1 WT~eEd~~L~~~~~~---~g~~--W~~Ia~~l~~Rt~~~-~~~r~~~~l~~~~~ 48 (60)
T PF13921_consen 1 WTKEEDELLLELVKK---YGND--WKKIAEHLGNRTPKQ-CRNRWRNHLRPKIS 48 (60)
T ss_dssp S-HHHHHHHHHHHHH---HTS---HHHHHHHSTTS-HHH-HHHHHHHTTSTTST
T ss_pred CCHHHHHHHHHHHHH---HCcC--HHHHHHHHCcCCHHH-HHHHHHHHCccccc
Confidence 999999999999999 9988 999999996699999 99999998876543
No 18
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.49 E-value=8.6e-08 Score=94.48 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
+++|..+|+.||+|||++|+++...+| .+|..||++ +||||+..+++.|+.
T Consensus 55 yLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~--LPGRTDNeIKN~Wnt 105 (238)
T KOG0048|consen 55 YLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGR--LPGRTDNEVKNHWNT 105 (238)
T ss_pred ccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhh--CCCcCHHHHHHHHHH
Confidence 488999999999999999999999999 889999998 899999999999975
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.36 E-value=1.1e-07 Score=67.95 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCCCCCCCCccccCCCCC
Q 010767 166 SQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPST 214 (502)
Q Consensus 166 pWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LpGRTdn~sIKNRw~s~ 214 (502)
+||.+||..|++++.. +| .. |..|+..+++||..+ |++||+.+
T Consensus 1 ~Wt~eE~~~l~~~~~~---~g~~~--w~~Ia~~~~~rs~~~-~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKK---YGKNN--WEKIAKELPGRTPKQ-CRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHH---HCcCC--HHHHHhHcCCCCHHH-HHHHHHHh
Confidence 5999999999999999 99 77 999999999999999 99999754
No 20
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.25 E-value=3.6e-07 Score=99.16 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=86.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHH
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 177 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lle 177 (502)
.+-..++.||.|||..|...+.++| +.|..|.+. .+|.+..||+||+++..+...++ +++|+.||+.+|..
T Consensus 286 ~~f~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~---~~rmp~~crd~wr~~~~~g~t~~-----~~~ws~eee~~l~~ 356 (512)
T COG5147 286 NIFEQRGKWTKEEEQELAKLVVEHG-GSWTEIGKL---LGRMPNDCRDRWRDYVKCGDTLK-----RNRWSIEEEELLDK 356 (512)
T ss_pred hHHhhhccCcccccccccccccccc-chhhHhhhh---hccCcHHHHHHHhhhccccCccC-----CCCCchhhhhhHHH
Confidence 3445789999999999999999999 999999986 48999999999999766666788 89999999988877
Q ss_pred HHHhhc--CC-CCCCchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 178 AMSLAL--DM-PVKNITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 178 av~~al--~~-G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
-+..-. .. -....|..|+.+++.|.-.. ++-++..++.
T Consensus 357 vv~e~~~~~~~~~~~~~~li~~~~~~~~~~~-~~~~~~~~~~ 397 (512)
T COG5147 357 VVNEMRLEAQQSSRILWLLIAQNIRNRLQHH-CRDKYGVLIS 397 (512)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhccccCC-CCCccccccc
Confidence 776311 01 11125999999999888877 6655555554
No 21
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.82 E-value=2.7e-05 Score=61.95 Aligned_cols=49 Identities=31% Similarity=0.409 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCc---cccccccccccC-chhhhhHHHHhh
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNW---ANILRGDFKWDR-TASQLSQRWNIL 150 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW---~~IAk~~F~pgR-T~kQCR~RW~nl 150 (502)
+++-.||+||.++++++++.+|.++| +.|++.+ ...| |..||+.+...|
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~-~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM-VVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998899 9999863 3355 999999999874
No 22
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.37 E-value=0.00012 Score=78.18 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.-...||.+|+-+|+++++.||.|||..||.+ +..|+..+|+++|.++
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~h--IGtKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADH--IGTKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHH--HcccchHHHHHHHHHH
Confidence 45678999999999999999999999999999 7799999999999984
No 23
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=97.05 E-value=0.00047 Score=76.46 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=72.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CCccc----------------------cccccccccCchhhhhHHHHhhhccCCC
Q 010767 100 RKKRKPWTAEEDLELISAVQKCGE-GNWAN----------------------ILRGDFKWDRTASQLSQRWNILRKKHGN 156 (502)
Q Consensus 100 rkkkg~WT~EEDe~Ll~lV~k~G~-~nW~~----------------------IAk~~F~pgRT~kQCR~RW~nl~~L~P~ 156 (502)
-.+.+.|+.+||..|-..|+.|-. ..|.. |... +|-|+.+.+-. .|+ +.+.
T Consensus 305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~--Lp~R~~~siy~---~~r-R~y~ 378 (607)
T KOG0051|consen 305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKL--LPYRDRKSIYH---HLR-RAYT 378 (607)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhh--cCcccchhHHH---HHH-hcCC
Confidence 345689999999999999997721 12332 2222 33444443322 111 1111
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 157 VILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 157 Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
+- .+.+|.||+||++.|..+|.+ +|+. |..|+..| ||.+.+ |+.||.......
T Consensus 379 ~F--E~~rg~wt~ee~eeL~~l~~~---~g~~--W~~Ig~~l-gr~P~~-crd~wr~~~~~g 431 (607)
T KOG0051|consen 379 PF--ENKRGKWTPEEEEELKKLVVE---HGND--WKEIGKAL-GRMPMD-CRDRWRQYVKCG 431 (607)
T ss_pred cc--ccccCCCCcchHHHHHHHHHH---hccc--HHHHHHHH-ccCcHH-HHHHHHHhhccc
Confidence 11 115899999999999999999 9999 99999888 899999 999998666543
No 24
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.99 E-value=0.00022 Score=59.02 Aligned_cols=56 Identities=30% Similarity=0.542 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHH------hCC-C------Ccccccccc--ccccCchhhhhHHHHhhhccCCCcc
Q 010767 103 RKPWTAEEDLELISAVQK------CGE-G------NWANILRGD--FKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k------~G~-~------nW~~IAk~~--F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
|..||.+|...|++++.. ++. + -|..||..+ +.-.|++.||+.||.+|+..+-.++
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999987 211 1 299999872 2348999999999999866555555
No 25
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.39 E-value=0.0019 Score=69.69 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 102 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
....||.+|-.+|+++|+.|| ..|.+||++ +..|+.-||-.||.+|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~H--VgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARH--VGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHH--hCCCCHHHHHHHHHcC
Confidence 566999999999999999999 999999999 7899999999999985
No 26
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.36 E-value=0.0029 Score=51.71 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHh---C---CCC--ccccccccccc-cCchhhhhHHHHhhhccCCCcc
Q 010767 103 RKPWTAEEDLELISAVQKC---G---EGN--WANILRGDFKW-DRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~---G---~~n--W~~IAk~~F~p-gRT~kQCR~RW~nl~~L~P~Ik 158 (502)
|.++|.|||+.|++.|.++ | .|| |.++++. .+ .+|-.+-|+||.. +|.+...
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~--~~t~HtwQSwR~Ry~K--~L~~~~~ 62 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEK--HPTRHTWQSWRDRYLK--HLRGRPR 62 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS---SSS--SHHHHHHHHH--HT-----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH--cCCCCCHHHHHHHHHH--HHhcccc
Confidence 6789999999999999755 2 234 9999987 45 9999999999987 6665443
No 27
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.94 E-value=0.0058 Score=67.11 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=48.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcc
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
...-+..||.+|+-+|+++|+.|| -+|.+|+.+ ...|+..||-.++..|=..++-+.
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~h--Vg~ks~eqCI~kFL~LPieD~~l~ 305 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADH--VGTKSQEQCILKFLRLPIEDPYLA 305 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhc--cCCCCHHHHHHHHHhcCccchhhh
Confidence 345688999999999999999999 999999999 789999999999998644444444
No 28
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.89 E-value=0.011 Score=48.39 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh-----CC-----------CCccccccc---cccccCchhhhhHHHHhhhc
Q 010767 102 KRKPWTAEEDLELISAVQKC-----GE-----------GNWANILRG---DFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~-----G~-----------~nW~~IAk~---~F~pgRT~kQCR~RW~nl~~ 152 (502)
+...||.+|.+.|+++|.+| |. .-|..|+.. .+...|+..||+.+|.+|+.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999987 21 129999987 22448999999999998643
No 29
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=95.66 E-value=0.0099 Score=58.30 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccc-cccccCchhhhhHHHHhh--------------hccCCCcccCCCCCCCCCH
Q 010767 105 PWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNIL--------------RKKHGNVILGSNSSGSQLS 169 (502)
Q Consensus 105 ~WT~EEDe~Ll~lV~k~G~~nW~~IAk~-~F~pgRT~kQCR~RW~nl--------------~~L~P~Ik~~~~~kgpWT~ 169 (502)
+|++++|-.|+.+|..-. +-..|+.. .|--..|-..+.+||+.| ..|+|.+......+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999997644 56666665 444456889999999865 3455555545557789999
Q ss_pred HHHHHHHHHHHhhcCCCCC-CchHHH-----hhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 170 EAQLAARHAMSLALDMPVK-NITASC-----TNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 170 EED~~Lleav~~al~~G~k-k~Ws~I-----A~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
+||++|...... .... ..+.+| +-+.++||... ..++|..+.+-.+-
T Consensus 79 ~EE~lL~~v~s~---~~p~le~Fq~LL~~n~~vFh~sRTak~-L~~HW~lmkqy~LL 131 (199)
T PF13325_consen 79 EEEQLLGTVASS---SQPSLETFQELLDKNRSVFHPSRTAKS-LQDHWRLMKQYHLL 131 (199)
T ss_pred HHHHHHHhhhhc---cCCcHHHHHHHHHhChhhhccccCHHH-HHHHHHHHHHhchh
Confidence 999999775433 2111 124433 23558999999 99999855444443
No 30
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.005 Score=67.30 Aligned_cols=51 Identities=29% Similarity=0.445 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
++.+..++.-|+.|||++|+.+...+. ..|.-|+.. -||++.||-+||.++
T Consensus 52 ~ldp~i~~tews~eederlLhlakl~p-~qwrtIa~i---~gr~~~qc~eRy~~l 102 (617)
T KOG0050|consen 52 WLDPAIKKTEWSREEDERLLHLAKLEP-TQWRTIADI---MGRTSQQCLERYNNL 102 (617)
T ss_pred HhCHHHhhhhhhhhHHHHHHHHHHhcC-CccchHHHH---hhhhHHHHHHHHHHH
Confidence 478889999999999999999999888 899999985 499999999999975
No 31
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.71 E-value=0.018 Score=60.05 Aligned_cols=46 Identities=26% Similarity=0.519 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
---|+.+|+-+|++..+..|.|||..||.+ ...|+...|+++|..+
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIady--iGsr~kee~k~HylK~ 108 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADY--IGSRAKEEIKSHYLKM 108 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHH--HhhhhhHHHHHHHHHH
Confidence 457999999999999999999999999998 6799999999999874
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.67 E-value=0.021 Score=54.36 Aligned_cols=47 Identities=36% Similarity=0.614 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCC-----ccccccccccccCchhhhhHHHHhh
Q 010767 101 KKRKPWTAEEDLELISAVQKCG-EGN-----WANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G-~~n-----W~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.+...||.|||.+|-+.|-+|= .|. ..++++. .+||+--|.-||+.+
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~---L~RTsAACGFRWNs~ 54 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRA---LNRTAAACGFRWNAY 54 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHH---HcccHHHhcchHHHH
Confidence 3577999999999999999882 122 7788876 399999999999963
No 33
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=93.21 E-value=0.023 Score=61.19 Aligned_cols=47 Identities=6% Similarity=-0.069 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCc
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTA 215 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~l 215 (502)
...||.+|+.+|++++.. ||-. ||..||.++..||..+ ||.||..+.
T Consensus 72 ~~~WtadEEilLLea~~t---~G~G-NW~dIA~hIGtKtkee-ck~hy~k~f 118 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAET---YGFG-NWQDIADHIGTKTKEE-CKEHYLKHF 118 (438)
T ss_pred CCCCChHHHHHHHHHHHH---hCCC-cHHHHHHHHcccchHH-HHHHHHHHH
Confidence 478999999999999999 9888 8999999999888888 999997655
No 34
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=92.18 E-value=0.081 Score=42.23 Aligned_cols=43 Identities=5% Similarity=-0.122 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCch---HHHhhcCC-CC-CCCCccccCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPV-KNIT---ASCTNTTA-GT-TSSATMNNPVP 212 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~-kk~W---s~IA~~Lp-GR-Tdn~sIKNRw~ 212 (502)
+-.||+||.+..+++++. +|. . | ..|+..|. .| |..+ |+.|..
T Consensus 3 r~~WT~eeh~~Fl~ai~~---~G~g~--~a~pk~I~~~~~~~~lT~~q-V~SH~Q 51 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQK---LGGPD--WATPKRILELMVVDGLTRDQ-VASHLQ 51 (57)
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCc--ccchHHHHHHcCCCCCCHHH-HHHHHH
Confidence 568999999999999999 998 6 9 99999884 23 7777 776654
No 35
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=92.12 E-value=0.077 Score=51.07 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC------ccccccccccccCchhhhhHHHHh
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGN------WANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~n------W~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
.+...||.|||.+|-+.|-+|+... ...++.. .+||..+|..||+.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~---L~rt~aac~fRwNs 54 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDA---LKRTAAACGFRWNS 54 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH---HhhhHHHHHhHHHH
Confidence 4678999999999999888886433 3344443 48999999999975
No 36
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.09 E-value=0.092 Score=47.63 Aligned_cols=52 Identities=38% Similarity=0.576 Sum_probs=40.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccc----------cccccCchhhhhHHHHhh
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~---~nW~~IAk~----------~F~pgRT~kQCR~RW~nl 150 (502)
+..+++.||+|||.-|+-.+.+||. +.|..|-.. .|+..||+..+..|-..|
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL 109 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTL 109 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHH
Confidence 3557899999999999999999998 889888543 235689999888887764
No 37
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.75 E-value=0.11 Score=53.81 Aligned_cols=56 Identities=25% Similarity=0.466 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCCC-----ccccccc--cccccCchhhhhHHHHhhhccCCCcc
Q 010767 103 RKPWTAEEDLELISAVQKC----GEGN-----WANILRG--DFKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~----G~~n-----W~~IAk~--~F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
...|+.+|-..|+++..+. ..++ |..||+. ....-|++.||+.||.+|.+++...+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k 120 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEK 120 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999988743 2333 9999984 22458999999999999877766555
No 38
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=90.47 E-value=0.046 Score=44.75 Aligned_cols=55 Identities=7% Similarity=-0.067 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHhhc----CCCCCCchHHHhhcCC-CCCCCCccccCCCCCcCCCc
Q 010767 164 SGSQLSEAQLAARHAMSLAL----DMPVKNITASCTNTTA-GTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al----~~G~kk~Ws~IA~~Lp-GRTdn~sIKNRw~s~lr~~~ 219 (502)
+.+||.|||.+|++.|...- ..+.++.|.+++..-+ .+|-.. .|+||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQS-wR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQS-WRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHH-HHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhccc
Confidence 56899999999999996521 1222337999999998 666655 9999988887654
No 39
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=90.04 E-value=0.33 Score=40.65 Aligned_cols=48 Identities=29% Similarity=0.545 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHh---CCC----C-----ccccccc---cccccCchhhhhHHHHhhhc
Q 010767 105 PWTAEEDLELISAVQKC---GEG----N-----WANILRG---DFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 105 ~WT~EEDe~Ll~lV~k~---G~~----n-----W~~IAk~---~F~pgRT~kQCR~RW~nl~~ 152 (502)
.||+++|+.|++++.+. |.. . |..|+.. .|....+..||++||..+++
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988644 212 2 8888876 23446688999999998544
No 40
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.38 E-value=0.22 Score=47.64 Aligned_cols=55 Identities=7% Similarity=-0.041 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKN--ITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk--~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
...||.|||.+|-+.|-.++.-|.-. ..-.++..| +||+-+ |.=|||+.+|+...
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAA-CGFRWNs~VRkqY~ 60 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAA-CGFRWNAYVRKQYE 60 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHH-hcchHHHHHHHHHH
Confidence 57899999999999988855445442 245566666 999999 99999999998764
No 41
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=84.12 E-value=0.86 Score=45.00 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCCccccccc---cccccCchhhhhHHHHhhh
Q 010767 101 KKRKPWTAEEDLELISAVQKCG--EGNWANILRG---DFKWDRTASQLSQRWNILR 151 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G--~~nW~~IAk~---~F~pgRT~kQCR~RW~nl~ 151 (502)
..+.+||.+||++|........ ...+.+|-.. .|-++||+++..++|+.|+
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmk 126 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMK 126 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHH
Confidence 4689999999999999876553 2347777655 5778999999999999763
No 42
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=83.36 E-value=1.2 Score=47.77 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCC-cccCCCCCCCCCHHHH
Q 010767 95 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGN-VILGSNSSGSQLSEAQ 172 (502)
Q Consensus 95 ~sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~-Ik~~~~~kgpWT~EED 172 (502)
..+.++++.-+|+.+|-++++.+...+| ..+..|+.. +|.|..+|++..|.+=-+.+|. |+-+-.-+.|+..+|=
T Consensus 357 ~t~g~~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~l--fP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY 432 (507)
T COG5118 357 STFGKKKGALRWSKKEIEKFYKALSIWG-TDFSLISSL--FPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEY 432 (507)
T ss_pred ccccCCCCCCcccHHHHHHHHHHHHHhc-chHHHHHHh--cCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHH
Confidence 3456778889999999999999999999 899999987 7999999999999875566664 2212223456766663
No 43
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=83.31 E-value=1 Score=48.51 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccCchhhhhHHHHhhhc
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGD----FKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~----F~pgRT~kQCR~RW~nl~~ 152 (502)
-..||.||-+.|.++++.|. -+|-.|+..+ |...||--.+++||..+++
T Consensus 130 dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred cccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 36799999999999999999 8999999874 6667999999999986543
No 44
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=78.23 E-value=2 Score=51.54 Aligned_cols=52 Identities=31% Similarity=0.459 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccc----------cccccCchhhhhHHHHhhhc
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRG----------DFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~----------~F~pgRT~kQCR~RW~nl~~ 152 (502)
.++..||.|||.-|+-.+.+||.++|.+|-.. .|+..||+..+..|-..|..
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 35667999999999999999999999998322 34678999999988887433
No 45
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=78.08 E-value=1.7 Score=48.39 Aligned_cols=50 Identities=4% Similarity=-0.069 Sum_probs=42.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 161 SNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 161 ~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
..-+..||.+|..+|++++.+ ||.. |.+|+.+...||-.+ |=-+|..+..
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~---y~dd--W~kVa~hVg~ks~eq-CI~kFL~LPi 299 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEM---YGDD--WNKVADHVGTKSQEQ-CILKFLRLPI 299 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHH---hccc--HHHHHhccCCCCHHH-HHHHHHhcCc
Confidence 344689999999999999999 9999 999999999999888 7666654433
No 46
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=75.64 E-value=1 Score=49.41 Aligned_cols=44 Identities=5% Similarity=-0.102 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPS 213 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s 213 (502)
...||.+|..+|++.+++ ||.. |.+||.++..+|-.+ |=-||..
T Consensus 279 dk~WS~qE~~LLLEGIe~---ygDd--W~kVA~HVgtKt~Eq-CIl~FL~ 322 (531)
T COG5259 279 DKNWSRQELLLLLEGIEM---YGDD--WDKVARHVGTKTKEQ-CILHFLQ 322 (531)
T ss_pred cccccHHHHHHHHHHHHH---hhhh--HHHHHHHhCCCCHHH-HHHHHHc
Confidence 459999999999999999 9999 999999999999888 7767653
No 47
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=75.30 E-value=1.1 Score=47.28 Aligned_cols=45 Identities=2% Similarity=-0.025 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCC
Q 010767 165 GSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 214 (502)
Q Consensus 165 gpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~ 214 (502)
..|+.+|+.+|++.... +|-. +|..||.++..|+... ||.||..+
T Consensus 64 e~WgadEEllli~~~~T---lGlG-NW~dIadyiGsr~kee-~k~HylK~ 108 (432)
T COG5114 64 EGWGADEELLLIECLDT---LGLG-NWEDIADYIGSRAKEE-IKSHYLKM 108 (432)
T ss_pred CCcCchHHHHHHHHHHh---cCCC-cHHHHHHHHhhhhhHH-HHHHHHHH
Confidence 57999999999999998 7766 7999999999999999 99888643
No 48
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=73.25 E-value=0.32 Score=40.18 Aligned_cols=51 Identities=8% Similarity=-0.040 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHhhc---CCC---C-C-C-chHHHhhcC----CCCCCCCccccCCCCCcC
Q 010767 165 GSQLSEAQLAARHAMSLAL---DMP---V-K-N-ITASCTNTT----AGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 165 gpWT~EED~~Lleav~~al---~~G---~-k-k-~Ws~IA~~L----pGRTdn~sIKNRw~s~lr 216 (502)
..||.+|...|++++..-+ .++ . + + .|..||..| ..||..+ |+++|.++.+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~q-c~~Kw~~L~~ 65 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQ-CRNKWKNLKK 65 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHH-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Confidence 5799999999999988821 121 1 1 1 599999998 4688888 9999987544
No 49
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=67.54 E-value=7.3 Score=46.89 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhH-------HHHhh-------------------------
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQ-------RWNIL------------------------- 150 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~-------RW~nl------------------------- 150 (502)
...|+..+=..++.++.+||..+...||.. +.+.|...++. ||..|
T Consensus 824 f~~w~~~~f~~f~~~~~~~gr~~~~~i~~~--~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~ 901 (1033)
T PLN03142 824 FSTWSRRDFNAFIRACEKYGRNDIKSIASE--MEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMK 901 (1033)
T ss_pred cCcccHHHHHHHHHHHHHhCHhHHHHHHHH--hcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888889987778888876 55666655541 11100
Q ss_pred -------hccCCC----cccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcC------------CCCCCCCcc
Q 010767 151 -------RKKHGN----VILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTT------------AGTTSSATM 207 (502)
Q Consensus 151 -------~~L~P~----Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~L------------pGRTdn~sI 207 (502)
.+.+|- |+.+.+++..||.|||..|+-.+.+ ||-. .|-.|...+ ..||... |
T Consensus 902 ~~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~---~g~~-~~~~~~~~i~~~~~f~fd~~~~srt~~~-~ 976 (1033)
T PLN03142 902 AIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHK---LGYG-NWDELKAAFRTSPLFRFDWFVKSRTPQE-L 976 (1033)
T ss_pred HHHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHH---hccc-hHHHHHHHHHhCCceeeehhhccCCHHH-H
Confidence 111221 2223344678999999999998888 8754 399885433 4677777 7
Q ss_pred ccCCCCCc
Q 010767 208 NNPVPSTA 215 (502)
Q Consensus 208 KNRw~s~l 215 (502)
+.|.++++
T Consensus 977 ~~r~~~l~ 984 (1033)
T PLN03142 977 ARRCDTLI 984 (1033)
T ss_pred HHHHHHHH
Confidence 77766554
No 50
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=66.74 E-value=5.3 Score=34.01 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=9.6
Q ss_pred CCCCCCCCCHHHHHHH
Q 010767 99 PRKKRKPWTAEEDLEL 114 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~L 114 (502)
|.-..|-||+|+|+.|
T Consensus 43 P~n~~GiWT~eDD~~L 58 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEML 58 (87)
T ss_dssp -TT-TT---HHHHHHH
T ss_pred CCCCCCCcCHHHHHHH
Confidence 4456899999999999
No 51
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=56.89 E-value=9.6 Score=28.50 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 109 EEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 109 EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
+=|.+|+...++.|.-.|..||+. -|=+...|..|+..|
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~---lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEE---LGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHH---HTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHH---HCcCHHHHHHHHHHh
Confidence 458999999999998889999997 388999999999874
No 52
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=56.41 E-value=11 Score=43.73 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
-..||+.|-.++.+++-.|. +++..|++. ++++|-.||-+-|+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km--~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKM--VKSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHH--hccccHHHHHHHHHH
Confidence 45899999999999999998 899999987 899999999987764
No 53
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=53.53 E-value=4.2 Score=33.95 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCC--------chHHHhhcCCCCCCCC----ccccCCCC
Q 010767 166 SQLSEAQLAARHAMSLALDMPVKN--------ITASCTNTTAGTTSSA----TMNNPVPS 213 (502)
Q Consensus 166 pWT~EED~~Lleav~~al~~G~kk--------~Ws~IA~~LpGRTdn~----sIKNRw~s 213 (502)
.||+++++.|++++...+.-|++. .|..|+..|-.++... +|||||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 499999999999987755444441 4999999985444432 38888753
No 54
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=51.33 E-value=47 Score=31.68 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCcccc
Q 010767 166 SQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNN 209 (502)
Q Consensus 166 pWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKN 209 (502)
.||.|+.+.|.++...+ .- -++||..|.|.|-|+ |--
T Consensus 2 ~Wtde~~~~L~~lw~~G----~S--asqIA~~lg~vsRnA-ViG 38 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEG----LS--ASQIARQLGGVSRNA-VIG 38 (162)
T ss_pred CCCHHHHHHHHHHHHcC----CC--HHHHHHHhCCcchhh-hhh
Confidence 49999999999999884 44 799999999899988 643
No 55
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=49.85 E-value=4.7 Score=32.79 Aligned_cols=50 Identities=4% Similarity=-0.107 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC--CCC----------CchHHHhhcC----C-CCCCCCccccCCCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDM--PVK----------NITASCTNTT----A-GTTSSATMNNPVPST 214 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~--G~k----------k~Ws~IA~~L----p-GRTdn~sIKNRw~s~ 214 (502)
+..||.+|.+.|++++...-++ +.. ..|..|+..| + .||..+ +|.+|..+
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~-lkkkW~nl 68 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQ-LKKKWKNL 68 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHH
Confidence 4579999999999998873211 311 1699999888 2 355555 77777643
No 56
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=47.03 E-value=2.7 Score=40.71 Aligned_cols=54 Identities=7% Similarity=-0.092 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHhhcCCCCCCCCccccCCCCCcCCCc
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKN--ITASCTNTTAGTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk--~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~ 219 (502)
.+.||.|||.+|-+.|-..+.-|... ....++..| +||.-+ |.-|||+.+++..
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aa-c~fRwNs~vrk~Y 60 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAA-CGFRWNSVVRKQY 60 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHH-HHhHHHHHHHHHH
Confidence 67899999999877776622222221 123333444 899999 9999999998765
No 57
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=46.84 E-value=9.3 Score=46.61 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHHh
Q 010767 102 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSL 181 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~~ 181 (502)
.---|..+||..|+-+|-+||.|+|..|--.-++ +=+.+ +.-..+ +. ...|...+-..|+.++..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L-~l~dK--------i~~~e~-~P-----~a~~L~~R~~yLls~~~~ 1196 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDL-GLTDK--------IFLVET-VP-----QAKHLQRRADYLLSLLRK 1196 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccc-cchhh--------hccccc-CC-----chHHHHHHHHHHHHHHhh
Confidence 4467999999999999999999999988644100 11111 000011 22 566777777778777777
No 58
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=44.86 E-value=20 Score=33.04 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 108 AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 108 ~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.+-|.+|+++.++.|.-.|.+||+. -|-+...|+.||..|
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~---lglS~~tV~~Ri~rL 47 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQ---FGVSPGTIHVRVEKM 47 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHH---HCcCHHHHHHHHHHH
Confidence 4689999999999998899999997 389999999999986
No 59
>PLN03162 golden-2 like transcription factor; Provisional
Probab=39.84 E-value=82 Score=34.45 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=40.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC--ccccccccccccCchhhhhHHHHhh
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGN--WANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~n--W~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.+||.|-.||+|=.++++++|++.|..+ =+.|.+.+-+++=|..+++.+.+.|
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKY 286 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKY 286 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4667889999999999999999999433 4566665435677888887777664
No 60
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=39.74 E-value=21 Score=32.52 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=31.3
Q ss_pred hhhhhHHHHhhhccCC-CcccCCCCCCCCCHHHHHHHHHHHHhhcCCCC--CCchHHHhhcC
Q 010767 140 ASQLSQRWNILRKKHG-NVILGSNSSGSQLSEAQLAARHAMSLALDMPV--KNITASCTNTT 198 (502)
Q Consensus 140 ~kQCR~RW~nl~~L~P-~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~--kk~Ws~IA~~L 198 (502)
-.+|++=|..|.-.+| .-+ +..||.+||.-|+-.+.+ ||- .+.|-.|...+
T Consensus 29 v~~~~~P~~~L~i~y~~~~~-----~k~yseeEDRfLl~~~~~---~G~~~~~~~e~Ik~~I 82 (118)
T PF09111_consen 29 VEQYKNPWQELKINYPPNNK-----KKVYSEEEDRFLLCMLYK---YGYDAEGNWEKIKQEI 82 (118)
T ss_dssp HCC-SSHHHH---SSTSTSS------SSS-HHHHHHHHHHHHH---HTTTSTTHHHHHHHHH
T ss_pred HHHccCCHHHCeeccCCCCC-----CCCcCcHHHHHHHHHHHH---hCCCCCchHHHHHHHH
Confidence 3555666776555555 333 789999999999888888 665 22598886643
No 61
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=38.46 E-value=42 Score=37.32 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPS 213 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s 213 (502)
...||.||--++-.++.. ||.. +.+|-+.||.|+=.. |.-+|+.
T Consensus 187 ~d~WT~Ed~vlFe~aF~~---~GK~--F~kIrq~LP~rsLaS-lvqyYy~ 230 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQF---FGKD--FHKIRQALPHRSLAS-LVQYYYS 230 (534)
T ss_pred cccchHHHHHHHHHHHHH---hccc--HHHHHHHccCccHHH-HHHHHHH
Confidence 478999998888899999 9999 999999999998766 5555553
No 62
>smart00595 MADF subfamily of SANT domain.
Probab=37.99 E-value=13 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=20.4
Q ss_pred CccccccccccccCchhhhhHHHHhhhc
Q 010767 125 NWANILRGDFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 125 nW~~IAk~~F~pgRT~kQCR~RW~nl~~ 152 (502)
-|..|+.. + +-+..+|+.||.+|+.
T Consensus 29 aW~~Ia~~--l-~~~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEE--L-GLSVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHH--H-CcCHHHHHHHHHHHHH
Confidence 39999987 3 4599999999998743
No 63
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=35.49 E-value=43 Score=38.18 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 95 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 95 ~sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.++.++....+|+.+|-++.......+| .+...|+.. ++.|..+|+|..+..-
T Consensus 401 ~t~sk~~~~~~w~~se~e~fyka~~~~g-s~~slis~l--~p~R~rk~iK~K~~~e 453 (584)
T KOG2009|consen 401 ATYSKKLETDKWDASETELFYKALSERG-SDFSLISNL--FPLRDRKQIKAKFKKE 453 (584)
T ss_pred hhccCccccCcccchhhHHhhhHHhhhc-ccccccccc--cccccHHHHHHHHhhh
Confidence 3457778899999999999999999999 899999987 7999999999999863
No 64
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=35.42 E-value=21 Score=38.80 Aligned_cols=46 Identities=4% Similarity=-0.093 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 165 GSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 165 gpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
.+|+.+|-++..+++.+ +|.. ++.|+..+|.|.-.+ ||-.|..--+
T Consensus 366 ~~Ws~~e~ekFYKALs~---wGtd--F~LIs~lfP~R~Rkq-IKaKfi~Eek 411 (507)
T COG5118 366 LRWSKKEIEKFYKALSI---WGTD--FSLISSLFPNRERKQ-IKAKFIKEEK 411 (507)
T ss_pred CcccHHHHHHHHHHHHH---hcch--HHHHHHhcCchhHHH-HHHHHHHHhh
Confidence 48999999999999999 8999 999999999999999 9987754433
No 65
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=35.01 E-value=27 Score=32.60 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 108 AEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 108 ~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.+-|.+|+.+.++.|.-.|.+||+. -|-+...|+.||..|
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~---lglS~~tv~~Ri~rL 52 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKR---VGLSPTPCLERVRRL 52 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHH---HCcCHHHHHHHHHHH
Confidence 5679999999999998899999997 388999999999986
No 66
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=31.48 E-value=18 Score=28.85 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=20.0
Q ss_pred CccccccccccccCchhhhhHHHHhhhc
Q 010767 125 NWANILRGDFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 125 nW~~IAk~~F~pgRT~kQCR~RW~nl~~ 152 (502)
-|..|+..+ ...-+..+|+.||.+|+.
T Consensus 28 aw~~Ia~~l-~~~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIAREL-GKEFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHH-ccchhHHHHHHHHHHHHH
Confidence 389999873 334678899999998643
No 67
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=30.01 E-value=1.3e+02 Score=34.80 Aligned_cols=47 Identities=17% Similarity=0.468 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccc--------cccCchhhhhHHHHhh
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDF--------KWDRTASQLSQRWNIL 150 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F--------~pgRT~kQCR~RW~nl 150 (502)
|..||-.|.+.+.++++++| +++..|-.... ..-.|-.|.|+.|+.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~ 142 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRL 142 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHH
Confidence 77999999999999999999 88888822110 1345667888888754
No 68
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=25.78 E-value=72 Score=27.97 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHh----CCC---Cccccccc---cccccCchhhhhHHHHhhhccCCCcccC--CCCCCCCCH
Q 010767 102 KRKPWTAEEDLELISAVQKC----GEG---NWANILRG---DFKWDRTASQLSQRWNILRKKHGNVILG--SNSSGSQLS 169 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~----G~~---nW~~IAk~---~F~pgRT~kQCR~RW~nl~~L~P~Ik~~--~~~kgpWT~ 169 (502)
-...||+|++-.|++++-.| |.. +|..+-.. .+-..=+..|..+.-+.|++++-..... ......++.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k~~~g~~~~~~~ 82 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKKSKNGKDPSFSK 82 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhhcccCcCCCCCC
Confidence 35679999999988887766 633 34333221 0011235566666655554443332210 000126788
Q ss_pred HHHHHHHHHHHh
Q 010767 170 EAQLAARHAMSL 181 (502)
Q Consensus 170 EED~~Lleav~~ 181 (502)
.-|+.+.++-++
T Consensus 83 ~hd~~~f~Lsk~ 94 (98)
T PF04504_consen 83 PHDRRLFELSKK 94 (98)
T ss_pred HhHHHHHHHHHH
Confidence 888888777766
No 69
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=23.27 E-value=1.3e+02 Score=28.38 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccc--cccccCchhhhhHHHHh
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRG--DFKWDRTASQLSQRWNI 149 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~--~F~pgRT~kQCR~RW~n 149 (502)
.+...=|..|-+-|..+|++|| .++..++.. +-.--.|..||+.+...
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhG-dDy~aMarD~KLN~~Q~T~~qlrrki~~ 161 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHG-DDYKAMARDRKLNYMQHTPGQLRRKIRK 161 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-ccHHHHhccCCCCcccCCHHHHHHHHHH
Confidence 5677889999999999999999 888888876 11125788888888776
No 70
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=22.66 E-value=3e+02 Score=29.59 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=36.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCc---cccccccccccCchhhhhHHHHh
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGEGNW---ANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~~nW---~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
.......||.-|-..|+.+.+-.....+ .+|++. +++|...++++--..
T Consensus 17 ~~~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~--l~~Rs~aEI~~fl~~ 68 (344)
T PF11035_consen 17 EVTGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKE--LPGRSEAEIRDFLQQ 68 (344)
T ss_pred CCCCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhh--ccCcCHHHHHHHHHH
Confidence 3445679999999999999986642444 466766 789999998875444
No 71
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=22.02 E-value=10 Score=41.13 Aligned_cols=49 Identities=8% Similarity=-0.092 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhc-----CCC-CCCCCccccCCCCCcCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNT-----TAG-TTSSATMNNPVPSTANAE 218 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~-----LpG-RTdn~sIKNRw~s~lr~~ 218 (502)
...||.+|-+-|+++.+. |--+ |..|+.+ ++. ||-.. +|.|||.+.++=
T Consensus 130 dn~WskeETD~LF~lck~---fDLR--f~VIaDRyd~qq~~~sRTvEd-LKeRyY~v~r~l 184 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKR---FDLR--FFVIADRYDNQQYKKSRTVED-LKERYYSVCRKL 184 (445)
T ss_pred cccccHHHHHHHHHHHHh---cCee--EEEEeeccchhhccccccHHH-HHHHHHHHHHHH
Confidence 357999999999999999 9889 9999988 554 88888 999999776653
No 72
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=20.58 E-value=1.1e+02 Score=34.32 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 100 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 100 rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.-....||.||--+|-.+.+.|| .++.+|-+. ++.|+-..+.+-|...
T Consensus 184 ~~~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~--LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 184 TEFPDEWTAEDIVLFEQAFQFFG-KDFHKIRQA--LPHRSLASLVQYYYSW 231 (534)
T ss_pred CCCcccchHHHHHHHHHHHHHhc-ccHHHHHHH--ccCccHHHHHHHHHHH
Confidence 34577899999999999999999 999999988 8999999999988763
Done!