Query 010767
Match_columns 502
No_of_seqs 282 out of 1452
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.9E-30 6.3E-35 221.9 5.4 103 101-218 2-104 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 7E-30 2.4E-34 227.2 6.8 104 103-221 2-105 (131)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 7.2E-30 2.5E-34 225.8 6.4 108 96-218 20-127 (128)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 3.9E-30 1.3E-34 221.7 2.8 101 103-218 1-101 (107)
5 3osg_A MYB21; transcription-DN 100.0 1.6E-29 5.4E-34 223.8 3.8 108 98-221 6-113 (126)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 4.3E-28 1.5E-32 221.4 6.7 107 97-218 52-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.4E-26 4.6E-31 211.5 1.6 105 101-219 4-108 (159)
8 2dim_A Cell division cycle 5-l 99.8 1.1E-20 3.8E-25 151.7 4.0 66 98-172 4-69 (70)
9 2juh_A Telomere binding protei 99.7 2.4E-18 8.3E-23 153.1 3.4 87 97-193 11-103 (121)
10 2roh_A RTBP1, telomere binding 99.7 6.6E-18 2.2E-22 150.5 5.8 84 97-188 25-114 (122)
11 1h8a_C AMV V-MYB, MYB transfor 99.7 1.2E-17 4.2E-22 147.5 1.4 77 129-219 1-77 (128)
12 3sjm_A Telomeric repeat-bindin 99.7 4E-17 1.4E-21 130.0 4.1 57 100-158 8-64 (64)
13 2d9a_A B-MYB, MYB-related prot 99.7 8.3E-17 2.8E-21 125.3 5.5 57 98-158 3-59 (60)
14 1ity_A TRF1; helix-turn-helix, 99.6 8.9E-17 3E-21 128.7 5.3 58 97-158 4-63 (69)
15 1gvd_A MYB proto-oncogene prot 99.6 1.8E-16 6.1E-21 120.2 5.4 52 101-156 1-52 (52)
16 1guu_A C-MYB, MYB proto-oncoge 99.6 2.3E-16 7.8E-21 119.4 4.5 51 102-156 2-52 (52)
17 1ign_A Protein (RAP1); RAP1,ye 99.6 1.4E-16 4.8E-21 155.6 1.7 115 99-218 4-200 (246)
18 1w0t_A Telomeric repeat bindin 99.6 9.9E-16 3.4E-20 116.8 4.6 49 102-152 1-51 (53)
19 2ckx_A NGTRF1, telomere bindin 99.6 3.9E-15 1.3E-19 124.5 7.3 74 104-181 1-79 (83)
20 2aje_A Telomere repeat-binding 99.6 4.4E-15 1.5E-19 129.2 7.0 82 95-181 5-92 (105)
21 1x41_A Transcriptional adaptor 99.5 3.3E-15 1.1E-19 116.8 5.1 56 98-157 3-58 (60)
22 2elk_A SPCC24B10.08C protein; 99.5 9.1E-15 3.1E-19 113.8 4.9 48 100-149 6-54 (58)
23 2din_A Cell division cycle 5-l 99.5 6.1E-15 2.1E-19 116.9 2.7 57 96-158 2-58 (66)
24 2llk_A Cyclin-D-binding MYB-li 99.4 6.9E-15 2.4E-19 120.4 -0.6 59 144-216 10-68 (73)
25 2cu7_A KIAA1915 protein; nucle 99.4 3.6E-14 1.2E-18 114.6 3.4 58 96-158 2-59 (72)
26 2yum_A ZZZ3 protein, zinc fing 99.4 3E-14 1E-18 115.4 2.8 57 98-158 3-64 (75)
27 2llk_A Cyclin-D-binding MYB-li 99.4 9.1E-14 3.1E-18 113.7 4.2 51 96-150 16-66 (73)
28 2d9a_A B-MYB, MYB-related prot 99.3 2.5E-13 8.5E-18 105.7 1.7 56 154-220 3-59 (60)
29 2yus_A SWI/SNF-related matrix- 99.3 7.6E-13 2.6E-17 109.5 4.7 55 99-156 14-68 (79)
30 3zqc_A MYB3; transcription-DNA 99.3 7.4E-13 2.5E-17 117.6 4.7 63 97-169 48-110 (131)
31 2din_A Cell division cycle 5-l 99.3 1.5E-13 5E-18 109.0 -1.7 57 152-220 2-58 (66)
32 2cu7_A KIAA1915 protein; nucle 99.3 2.7E-13 9.1E-18 109.4 -1.3 57 153-220 3-59 (72)
33 1guu_A C-MYB, MYB proto-oncoge 99.2 6.2E-13 2.1E-17 100.5 -0.5 49 164-218 3-52 (52)
34 1gv2_A C-MYB, MYB proto-oncoge 99.2 6.6E-12 2.3E-16 106.9 5.6 51 97-150 50-100 (105)
35 1gvd_A MYB proto-oncogene prot 99.2 1.2E-12 3.9E-17 99.2 0.5 50 164-218 3-52 (52)
36 3osg_A MYB21; transcription-DN 99.2 8.8E-12 3E-16 110.1 5.2 53 97-152 56-108 (126)
37 2ltp_A Nuclear receptor corepr 98.8 1.4E-12 4.9E-17 109.6 0.0 56 152-218 9-64 (89)
38 2k9n_A MYB24; R2R3 domain, DNA 99.2 7.9E-12 2.7E-16 107.4 4.4 53 97-152 47-99 (107)
39 2ltp_A Nuclear receptor corepr 98.8 1.7E-12 5.7E-17 109.2 0.0 51 97-150 10-60 (89)
40 2cqr_A RSGI RUH-043, DNAJ homo 99.2 6.8E-12 2.3E-16 102.6 3.4 51 99-151 14-67 (73)
41 2dim_A Cell division cycle 5-l 99.2 5.2E-12 1.8E-16 101.1 1.5 56 154-220 4-60 (70)
42 1x58_A Hypothetical protein 49 99.1 2.6E-11 8.9E-16 96.5 4.5 51 101-152 6-57 (62)
43 1x41_A Transcriptional adaptor 99.1 6.1E-12 2.1E-16 98.2 0.3 53 155-218 4-57 (60)
44 1ity_A TRF1; helix-turn-helix, 99.1 6.1E-12 2.1E-16 100.6 -0.3 58 152-220 3-63 (69)
45 1w0t_A Telomeric repeat bindin 99.1 8.1E-12 2.8E-16 95.1 -0.5 48 164-217 2-52 (53)
46 2yum_A ZZZ3 protein, zinc fing 99.0 9.1E-12 3.1E-16 100.8 -2.0 55 154-219 3-63 (75)
47 2cjj_A Radialis; plant develop 99.0 6.7E-11 2.3E-15 100.8 1.9 47 102-150 7-56 (93)
48 3sjm_A Telomeric repeat-bindin 99.0 3.5E-11 1.2E-15 95.7 -0.8 51 163-219 10-63 (64)
49 2elk_A SPCC24B10.08C protein; 98.9 8.1E-11 2.8E-15 91.5 0.1 45 164-214 9-55 (58)
50 2cqr_A RSGI RUH-043, DNAJ homo 98.9 1.7E-10 5.8E-15 94.3 -0.8 48 164-217 18-69 (73)
51 2eqr_A N-COR1, N-COR, nuclear 98.9 2.4E-09 8.3E-14 84.0 5.6 52 95-149 4-55 (61)
52 1ign_A Protein (RAP1); RAP1,ye 98.8 4.6E-10 1.6E-14 109.9 -0.3 53 164-220 8-64 (246)
53 1x58_A Hypothetical protein 49 98.7 1E-09 3.5E-14 87.4 -0.1 51 162-218 6-59 (62)
54 2yus_A SWI/SNF-related matrix- 98.7 1.9E-09 6.6E-14 89.1 1.4 45 164-214 18-62 (79)
55 2ckx_A NGTRF1, telomere bindin 98.6 1.8E-09 6.2E-14 90.2 -1.4 49 165-219 1-54 (83)
56 2juh_A Telomere binding protei 98.6 3.1E-09 1.1E-13 94.6 -0.7 48 164-217 17-69 (121)
57 2cjj_A Radialis; plant develop 98.6 4.3E-09 1.5E-13 89.7 -1.0 48 164-217 8-59 (93)
58 2aje_A Telomere repeat-binding 98.6 5.8E-09 2E-13 90.8 -0.3 51 164-220 13-68 (105)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.5 6.8E-08 2.3E-12 78.7 3.5 50 101-153 6-58 (72)
60 2roh_A RTBP1, telomere binding 98.4 1.3E-08 4.3E-13 90.8 -1.8 49 164-218 31-84 (122)
61 1fex_A TRF2-interacting telome 98.3 2.7E-07 9.4E-12 72.4 3.3 47 103-153 2-57 (59)
62 2iw5_B Protein corest, REST co 98.3 4.4E-07 1.5E-11 88.4 4.8 49 99-150 129-177 (235)
63 2eqr_A N-COR1, N-COR, nuclear 98.2 1.5E-07 5E-12 73.8 0.4 47 164-216 12-58 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.1 1.4E-06 4.9E-11 71.3 3.1 46 103-150 8-56 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 97.9 1.3E-06 4.4E-11 71.1 0.3 49 162-217 6-58 (72)
66 3hm5_A DNA methyltransferase 1 97.9 1E-06 3.4E-11 75.3 -0.7 62 139-217 16-82 (93)
67 2iw5_B Protein corest, REST co 97.9 1.1E-06 3.7E-11 85.7 -0.8 48 164-217 133-180 (235)
68 4eef_G F-HB80.4, designed hema 97.6 1.5E-05 5E-10 65.5 2.0 46 102-149 19-67 (74)
69 3hm5_A DNA methyltransferase 1 97.6 3.3E-05 1.1E-09 66.0 3.4 49 103-152 30-81 (93)
70 2ebi_A DNA binding protein GT- 97.5 2.8E-05 9.6E-10 64.1 1.8 59 100-158 1-70 (86)
71 1wgx_A KIAA1903 protein; MYB D 97.5 2.5E-05 8.6E-10 64.0 1.3 53 164-220 8-62 (73)
72 2yqk_A Arginine-glutamic acid 97.5 0.00014 4.8E-09 57.4 5.4 50 98-149 4-53 (63)
73 2xag_B REST corepressor 1; ami 97.5 9.5E-06 3.2E-10 86.4 -2.1 45 164-214 380-424 (482)
74 2lr8_A CAsp8-associated protei 96.4 3.4E-05 1.2E-09 62.5 0.0 47 165-216 15-62 (70)
75 2xag_B REST corepressor 1; ami 97.3 0.00014 4.8E-09 77.5 4.3 47 101-150 378-424 (482)
76 1ug2_A 2610100B20RIK gene prod 97.1 0.00066 2.3E-08 57.9 5.9 54 99-154 29-84 (95)
77 1fex_A TRF2-interacting telome 97.1 7.7E-05 2.6E-09 58.4 0.1 51 164-216 2-58 (59)
78 2lr8_A CAsp8-associated protei 96.1 0.0001 3.5E-09 59.7 0.0 51 102-155 13-65 (70)
79 1ug2_A 2610100B20RIK gene prod 96.9 8.3E-05 2.8E-09 63.3 -1.9 49 164-216 33-82 (95)
80 1ofc_X ISWI protein; nuclear p 96.8 0.00029 9.8E-09 71.3 1.6 108 103-216 110-274 (304)
81 2crg_A Metastasis associated p 96.7 0.0016 5.5E-08 52.4 4.7 48 100-149 5-52 (70)
82 4a69_C Nuclear receptor corepr 96.6 0.0014 4.9E-08 55.5 4.1 46 101-149 41-86 (94)
83 4eef_G F-HB80.4, designed hema 96.6 0.0002 6.7E-09 58.9 -1.4 43 164-212 20-66 (74)
84 2yqk_A Arginine-glutamic acid 96.3 0.0011 3.9E-08 52.1 1.3 43 164-212 9-52 (63)
85 4iej_A DNA methyltransferase 1 95.6 0.0072 2.5E-07 51.6 3.3 47 104-151 31-80 (93)
86 4b4c_A Chromodomain-helicase-D 95.5 0.024 8.1E-07 53.1 6.8 47 99-145 3-51 (211)
87 1irz_A ARR10-B; helix-turn-hel 95.4 0.018 6.1E-07 46.1 4.7 53 98-150 2-56 (64)
88 4a69_C Nuclear receptor corepr 94.9 0.0064 2.2E-07 51.5 0.9 43 164-212 43-85 (94)
89 2crg_A Metastasis associated p 94.3 0.01 3.6E-07 47.6 0.8 43 164-212 8-51 (70)
90 4b4c_A Chromodomain-helicase-D 94.3 0.028 9.6E-07 52.6 3.8 30 103-132 134-163 (211)
91 2xb0_X Chromo domain-containin 93.7 0.028 9.6E-07 56.0 2.8 29 104-132 169-197 (270)
92 1ofc_X ISWI protein; nuclear p 93.7 0.023 7.9E-07 57.5 2.0 51 102-152 211-274 (304)
93 4iej_A DNA methyltransferase 1 93.1 0.011 3.6E-07 50.6 -1.3 48 164-217 30-82 (93)
94 2y9y_A Imitation switch protei 90.4 0.15 5.1E-06 53.0 3.4 48 102-149 227-287 (374)
95 2y9y_A Imitation switch protei 85.9 1.8 6E-05 45.1 7.9 107 103-216 123-290 (374)
96 2ebi_A DNA binding protein GT- 68.6 0.16 5.5E-06 41.5 -4.8 53 164-217 4-65 (86)
97 1irz_A ARR10-B; helix-turn-hel 45.0 6 0.0002 31.5 0.7 44 164-211 7-53 (64)
98 3cz6_A DNA-binding protein RAP 29.9 39 0.0013 31.6 3.6 24 99-122 110-141 (168)
99 2ys8_A RAB-related GTP-binding 29.6 2.2E+02 0.0074 22.8 7.8 52 102-158 8-60 (90)
100 2xb0_X Chromo domain-containin 29.2 52 0.0018 32.6 4.7 46 102-147 2-49 (270)
101 2p1m_A SKP1-like protein 1A; F 25.6 37 0.0013 30.4 2.7 35 128-178 120-154 (160)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.96 E-value=1.9e-30 Score=221.90 Aligned_cols=103 Identities=27% Similarity=0.335 Sum_probs=97.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHH
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 180 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~ 180 (502)
.++++||+|||++|+++|++||.++|..||+. +++|+++||++||.+ +|+|.++ +++||.|||++|+++|.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~--~l~p~~~-----~~~Wt~eEd~~L~~~~~ 72 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN--HLNPEVK-----KTSWTEEEDRIIYQAHK 72 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH--TTCCCCC-----CCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh--hcCCCHHHHHHHHHh--ccCCccc-----ccCCCHHHHHHHHHHHH
Confidence 47899999999999999999998899999987 899999999999999 9999999 99999999999999999
Q ss_pred hhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 181 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 181 ~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
+ ||++ |+.||.+|||||+++ |||||+.+++++
T Consensus 73 ~---~G~~--W~~Ia~~l~gRt~~~-~k~rw~~~~~~~ 104 (105)
T 1gv2_A 73 R---LGNR--WAEIAKLLPGRTDNA-IKNHWNSTMRRK 104 (105)
T ss_dssp H---HSSC--HHHHHTTCTTCCHHH-HHHHHHHHTC--
T ss_pred H---hCCC--HHHHHHHcCCCCHHH-HHHHHHHHHhcc
Confidence 9 9999 999999999999999 999999998875
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.96 E-value=7e-30 Score=227.21 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHHhh
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLA 182 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~~a 182 (502)
||+||+|||++|+.+|.+||.++|..||.. +++|+++||++||.+ +|+|.++ +++||.|||++|+++|..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--~~~Rt~~qcr~Rw~~--~l~p~~~-----~~~Wt~eEd~~L~~~~~~- 71 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF--LPNRSPKQCRERWFN--HLDPAVV-----KHAWTPEEDETIFRNYLK- 71 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS--CTTSCHHHHHHHHHH--HTSTTCC-----CSCCCHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH--HCCCCHHHHHHHHhh--ccCcccc-----CCCCCHHHHHHHHHHHHH-
Confidence 789999999999999999999999999987 899999999999999 9999999 999999999999999999
Q ss_pred cCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCccc
Q 010767 183 LDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEASS 221 (502)
Q Consensus 183 l~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s~ 221 (502)
||++ |+.||.+|||||+++ |||||+.++++....
T Consensus 72 --~G~~--W~~Ia~~l~gRt~~~-~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 72 --LGSK--WSVIAKLIPGRTDNA-IKNRWNSSISKRIST 105 (131)
T ss_dssp --SCSC--HHHHTTTSTTCCHHH-HHHHHHHTTGGGCCC
T ss_pred --HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHHhhc
Confidence 9999 999999999999999 999999999998764
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=7.2e-30 Score=225.81 Aligned_cols=108 Identities=27% Similarity=0.368 Sum_probs=101.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHH
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAA 175 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~L 175 (502)
.+.+..++++||+|||++|+++|++||.++|..||.. +++||++||++||.+ +|+|.++ +++||.|||++|
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~--~l~p~~~-----~~~WT~eEd~~L 90 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHN--HLNPEVK-----KTSWTEEEDRII 90 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH--SSSCCHHHHHHHHHH--TTCSSSC-----CSCCCHHHHHHH
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH--hcCCcHHHHHHHHHH--hcccccc-----cccCCHHHHHHH
Confidence 3577889999999999999999999998899999987 899999999999999 9999999 999999999999
Q ss_pred HHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 176 RHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 176 leav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
++++.+ ||++ |+.||.+|||||+++ |||||+.+++++
T Consensus 91 ~~~~~~---~G~~--W~~Ia~~l~gRt~~~-~k~r~~~~~~~~ 127 (128)
T 1h8a_C 91 YQAHKR---LGNR--WAEIAKLLPGRTDNA-VKNHWNSTMRRK 127 (128)
T ss_dssp HHHHHH---HCSC--HHHHGGGSTTCCHHH-HHHHHHTTTTC-
T ss_pred HHHHHH---HCcC--HHHHHHHCCCCCHHH-HHHHHHHHHhcc
Confidence 999999 9999 999999999999999 999999999875
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.95 E-value=3.9e-30 Score=221.66 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHHhh
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLA 182 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~~a 182 (502)
|++||+|||++|+++|++||.++|..||.. +++||++||++||.+ +|+|+++ +++||.|||++|+++|.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--~~~Rt~~qcr~Rw~~--~L~p~i~-----~~~WT~eEd~~L~~~~~~- 70 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQL--MITRNPRQCRERWNN--YINPALR-----TDPWSPEEDMLLDQKYAE- 70 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHH--TTTSCHHHHHHHHHH--HSSSCCT-----TCCCCHHHHHHHHHHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhh--cCCCCHHHHHHHHHH--HHccccc-----ccccCHHHHHHHHHHHHH-
Confidence 589999999999999999998899999987 899999999999999 9999999 999999999999999999
Q ss_pred cCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 183 LDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 183 l~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
||++ |..||.+|||||+++ |||||+.++++.
T Consensus 71 --~G~~--W~~Ia~~l~gRt~~~-~k~rw~~l~r~~ 101 (107)
T 2k9n_A 71 --YGPK--WNKISKFLKNRSDNN-IRNRWMMIARHR 101 (107)
T ss_dssp --TCSC--HHHHHHHHSSSCHHH-HHHHHHHHHHHH
T ss_pred --hCcC--HHHHHHHCCCCCHHH-HHHHHHHHHhhH
Confidence 9999 999999999999999 999999888764
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.95 E-value=1.6e-29 Score=223.82 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=100.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHH
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARH 177 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lle 177 (502)
.+..++++||+|||++|+++|++||. +|..||+. +++|+++||++||.+ +|+|.++ +++||.|||++|++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~--~~~Rt~~qcr~Rw~~--~l~p~~~-----~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT--FPNRNARQCRDRWKN--YLAPSIS-----HTPWTAEEDALLVQ 75 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT--CTTCCHHHHHHHHHH--HTSTTSC-----CSCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH--cCCCCHHHHHHHHhh--hcccccc-----cccCCHHHHHHHHH
Confidence 45678999999999999999999995 99999987 899999999999999 9999999 99999999999999
Q ss_pred HHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCccc
Q 010767 178 AMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEASS 221 (502)
Q Consensus 178 av~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s~ 221 (502)
+|.+ ||++ |..||.+|||||+++ |||||+.++++-..|
T Consensus 76 ~v~~---~G~~--W~~Ia~~l~gRt~~~-~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 76 KIQE---YGRQ--WAIIAKFFPGRTDIH-IKNRWVTISNKLGIP 113 (126)
T ss_dssp HHHH---HCSC--HHHHHTTSTTCCHHH-HHHHHHHHHHHTTC-
T ss_pred HHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHhcCCC
Confidence 9999 9999 999999999999999 999999988876544
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.94 E-value=4.3e-28 Score=221.39 Aligned_cols=107 Identities=27% Similarity=0.353 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHH
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAAR 176 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Ll 176 (502)
+.+..++++||+|||++|+++|++||.++|..||.. +++||+.||++||.+ +|+|.++ +++||.|||++|+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~--~l~p~~~-----~~~WT~eEd~~L~ 122 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN--HLNPEVK-----KTSWTEEEDRIIY 122 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHT--STTCCHHHHHHHHHH--TTCTTSC-----CSCCCHHHHHHHH
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHH--cCCCCHHHHHHHHHH--HhCcccc-----ccCCChHHHHHHH
Confidence 577889999999999999999999998899999987 899999999999999 9999999 9999999999999
Q ss_pred HHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 177 HAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 177 eav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
+++.+ ||++ |+.||.+|||||+++ |||||+.+++++
T Consensus 123 ~~~~~---~g~~--W~~Ia~~l~gRt~~~-~knr~~~~~r~~ 158 (159)
T 1h89_C 123 QAHKR---LGNR--WAEIAKLLPGRTDNA-IKNHWNSTMRRK 158 (159)
T ss_dssp HHHHH---HCSC--HHHHHTTSTTCCHHH-HHHHHHTTTCC-
T ss_pred HHHHH---HCCC--HHHHHHHCCCCCHHH-HHHHHHHHHhcc
Confidence 99999 9999 999999999999999 999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.92 E-value=1.4e-26 Score=211.46 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHH
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMS 180 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~ 180 (502)
.++++||+|||++|+++|++||.++|..||.. +++|+++||++||.+ +|+|.++ +++||.|||++|+++|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~--l~~Rt~~qcr~Rw~~--~l~p~~~-----~~~Wt~eEd~~L~~~v~ 74 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANY--LPNRTDVQCQHRWQK--VLNPELI-----KGPWTKEEDQRVIKLVQ 74 (159)
T ss_dssp -----------------------------------------CHHHHHHT--TTCTTCC-----CSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--cCCCCHHHHHHHHHH--ccCCCcC-----CCCCChHHHHHHHHHHH
Confidence 46899999999999999999999999999987 899999999999999 9999999 99999999999999999
Q ss_pred hhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCc
Q 010767 181 LALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 181 ~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~ 219 (502)
. ||.+ .|..||.+|||||+.+ |++||+.+|++..
T Consensus 75 ~---~g~~-~W~~Ia~~l~~Rt~~q-cr~Rw~~~l~p~~ 108 (159)
T 1h89_C 75 K---YGPK-RWSVIAKHLKGRIGKQ-CRERWHNHLNPEV 108 (159)
T ss_dssp H---HCSC-CHHHHHHTSTTCCHHH-HHHHHHHTTCTTS
T ss_pred H---hCcc-cHHHHHHHcCCCCHHH-HHHHHHHHhCccc
Confidence 9 9962 3999999999999999 9999999987654
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-20 Score=151.65 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=63.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHH
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQ 172 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED 172 (502)
.+..++++||+|||++|+++|++||.++|..||+. +++||++|||+||.+ +|+|.|+ +++||.|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--l~~Rt~~qcr~Rw~~--~L~p~i~-----~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARWYE--WLDPSIK-----KTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH--STTCCHHHHHHHHHH--TSCSSSC-----CCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--hcCCCHHHHHHHHHH--HcCCccc-----CCCCChHhc
Confidence 56778999999999999999999999999999987 789999999999999 9999999 999999997
No 9
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.71 E-value=2.4e-18 Score=153.05 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--cccCchhhhhHHHHhhhc---cCCCcccCCCCCC-CCCHH
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRK---KHGNVILGSNSSG-SQLSE 170 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F--~pgRT~kQCR~RW~nl~~---L~P~Ik~~~~~kg-pWT~E 170 (502)
+..++++++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.+ +.|.++ ++ +|+.|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~k-----rg~~~p~e 85 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR-----RGEPVPQD 85 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTC-----CCSCCCHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCccc-----CCCCCCHH
Confidence 46788999999999999999999999999999999843 489999999999999543 348888 78 99999
Q ss_pred HHHHHHHHHHhhcCCCCCCchHH
Q 010767 171 AQLAARHAMSLALDMPVKNITAS 193 (502)
Q Consensus 171 ED~~Lleav~~al~~G~kk~Ws~ 193 (502)
|+++|++++.. +|++ |++
T Consensus 86 ~~~rv~~~h~~---~gn~--~~~ 103 (121)
T 2juh_A 86 LLDRVLAAHAY---WSQQ--QGK 103 (121)
T ss_dssp HHHHHHHHHHH---HHHH--HCC
T ss_pred HHHHHHHHHHH---Hccc--hhc
Confidence 99999999999 9999 876
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=6.6e-18 Score=150.47 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--cccCchhhhhHHHHhhhc---cCCCcccCCCCCCCCCHHH
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRK---KHGNVILGSNSSGSQLSEA 171 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F--~pgRT~kQCR~RW~nl~~---L~P~Ik~~~~~kgpWT~EE 171 (502)
...++++++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.+ ++|.++ ++.|+++|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~k-----r~~~~p~e 99 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQR-----RGAPVPQE 99 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTC-----CCSSCCHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccc-----CCCCCCHH
Confidence 46778999999999999999999999999999999742 489999999999999542 389999 89999999
Q ss_pred -HHHHHHHHHhhcCCCCC
Q 010767 172 -QLAARHAMSLALDMPVK 188 (502)
Q Consensus 172 -D~~Lleav~~al~~G~k 188 (502)
+++|++++.. +|++
T Consensus 100 ~~~~v~~~h~~---~g~~ 114 (122)
T 2roh_A 100 LLDRVLAAQAY---WSVD 114 (122)
T ss_dssp HHHHHHHHHHH---HHSS
T ss_pred HHHHHHHHHHH---HhhH
Confidence 8999999999 8777
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.66 E-value=1.2e-17 Score=147.49 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=52.1
Q ss_pred cccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccc
Q 010767 129 ILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMN 208 (502)
Q Consensus 129 IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIK 208 (502)
||+. +++||+.||++||.+ +|+|+++ +++||.|||++|+++|.. ||.+ +|..||.+|||||+.+ |+
T Consensus 1 Ia~~--~~~Rt~~qC~~Rw~~--~l~p~~~-----k~~Wt~eED~~L~~~v~~---~g~~-~W~~Ia~~l~~Rt~~q-cr 66 (128)
T 1h8a_C 1 MEAV--IKNRTDVQCQHRWQK--VLNPELN-----KGPWTKEEDQRVIEHVQK---YGPK-RWSDIAKHLKGRIGKQ-CR 66 (128)
T ss_dssp -------------------------CTTCC-----CSCCCHHHHHHHHHHHHH---TCSC-CHHHHHHHSSSCCHHH-HH
T ss_pred Cccc--cCCCCHHHHHHHHHH--hhCCCCC-----CCCCCHHHHHHHHHHHHH---HCCC-CHHHHHHHhcCCcHHH-HH
Confidence 6765 899999999999999 9999999 999999999999999999 9963 3999999999999999 99
Q ss_pred cCCCCCcCCCc
Q 010767 209 NPVPSTANAEA 219 (502)
Q Consensus 209 NRw~s~lr~~~ 219 (502)
+||..+|++..
T Consensus 67 ~Rw~~~l~p~~ 77 (128)
T 1h8a_C 67 ERWHNHLNPEV 77 (128)
T ss_dssp HHHHHTTCSSS
T ss_pred HHHHHhccccc
Confidence 99999998764
No 12
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.65 E-value=4e-17 Score=130.03 Aligned_cols=57 Identities=37% Similarity=0.532 Sum_probs=49.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcc
Q 010767 100 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 100 rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
..+|++||+|||++|+++|++||.++|..||+.+++.+||+.|||+||++ .+.|.|+
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~n--l~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT--MKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH--HHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHH--HhccCCC
Confidence 35789999999999999999999999999999754569999999999999 5666654
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=8.3e-17 Score=125.33 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcc
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
.+..++++||+|||++|+++|++||.++|..||+. +++||++|||+||.+ +|+|+|+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~--~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASH--FPNRTDQQCQYRWLR--VLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH--CSSSCHHHHHHHHHH--TSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--ccCCCHHHHHHHHHH--HcCCccC
Confidence 46678999999999999999999998899999987 799999999999999 9999986
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=8.9e-17 Score=128.71 Aligned_cols=58 Identities=41% Similarity=0.647 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccc--cCchhhhhHHHHhhhccCCCcc
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW--DRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~p--gRT~kQCR~RW~nl~~L~P~Ik 158 (502)
..+++++++||+|||++|+++|++||.++|..||.. ++ +||+.|||+||++ +|+|.|+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~~~~Rt~~qcr~Rw~~--~l~p~i~ 63 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YKFNNRTSVMLKDRWRT--MKKLKLI 63 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHH--SCCSSCCHHHHHHHHHH--HHHTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHH--cCcCCCCHHHHHHHHHH--HcCCCCC
Confidence 367789999999999999999999999999999987 67 9999999999999 9999999
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=1.8e-16 Score=120.18 Aligned_cols=52 Identities=35% Similarity=0.567 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCC
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGN 156 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~ 156 (502)
.++++||+|||++|+++|++||.++|..||+. +++||++|||+||.+ +|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~--~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHN--HLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT--STTCCHHHHHHHHHH--TTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHH--cCCCCHHHHHHHHHH--HcCcC
Confidence 36899999999999999999998899999987 799999999999999 99885
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=2.3e-16 Score=119.44 Aligned_cols=51 Identities=29% Similarity=0.459 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCC
Q 010767 102 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGN 156 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~ 156 (502)
++++||+|||++|+++|++||.++|..||+. +++||++||++||.+ +|+|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~Rw~~--~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANY--LPNRTDVQCQHRWQK--VLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT--STTCCHHHHHHHHHH--HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH--cCCCCHHHHHHHHHH--HcCcC
Confidence 6899999999999999999998899999987 799999999999999 88885
No 17
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.59 E-value=1.4e-16 Score=155.56 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=89.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccCchhhhhHHHHhhhccCCCcc---------------
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGEGN-----WANILRGDFKWDRTASQLSQRWNILRKKHGNVI--------------- 158 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~~n-----W~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik--------------- 158 (502)
+..++++||+|||++|+++|++||..+ |..||++ ++|||+.|||+||+. +|.+.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~--LpGRT~nsIRnRw~~--~L~~~ln~vy~~ded~~Li~d~ 79 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY--VPNHTGNSIRHRFRV--YLSKRLEYVYEVDKFGKLVRDD 79 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT--STTSCHHHHHHHHHH--TTGGGCCCEECBCTTSCBCBCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH--cCCCCHHHHHHHHHH--HHhhhcccccccCcchhhhhcc
Confidence 345789999999999999999998643 9999987 899999999999999 7777764
Q ss_pred ---------cCCCCCCCCCHHHHHHHHHHHHhhc------------------------------CCCC------------
Q 010767 159 ---------LGSNSSGSQLSEAQLAARHAMSLAL------------------------------DMPV------------ 187 (502)
Q Consensus 159 ---------~~~~~kgpWT~EED~~Lleav~~al------------------------------~~G~------------ 187 (502)
....-+..||.|||-.|.+.+.+.+ .|+.
T Consensus 80 ~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 159 (246)
T 1ign_A 80 DGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAA 159 (246)
T ss_dssp TSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC------------------------------
T ss_pred CCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhh
Confidence 0111258899999999998887611 0111
Q ss_pred -----------CCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 188 -----------KNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 188 -----------kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
+..|.+|++++|+||+++ +||||...++..
T Consensus 160 ~~~~~~~gp~~~~~fk~ia~~~P~HT~~S-WRdRyrKfl~~~ 200 (246)
T 1ign_A 160 YRTQSRRGPIAREFFKHFAEEHAAHTENA-WRDRFRKFLLAY 200 (246)
T ss_dssp -CCCCCCCCCCTTHHHHHHHHTTTSCHHH-HHHHHHHTHHHH
T ss_pred hccccccCcchHHHHHHHHHHCCCCChhh-HHHHHHHHHhhc
Confidence 014999999999999999 999999888765
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=9.9e-16 Score=116.78 Aligned_cols=49 Identities=47% Similarity=0.802 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccc--cCchhhhhHHHHhhhc
Q 010767 102 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW--DRTASQLSQRWNILRK 152 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~p--gRT~kQCR~RW~nl~~ 152 (502)
++++||+|||++|+++|++||.++|..||+. ++ +||+.||++||.+|.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~--~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH--SCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cCCCCCCHHHHHHHHHHHHc
Confidence 5799999999999999999999999999997 67 9999999999999543
No 19
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.56 E-value=3.9e-15 Score=124.49 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccc--cccCchhhhhHHHHhhh---ccCCCcccCCCCCCCCCHHHHHHHHHH
Q 010767 104 KPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILR---KKHGNVILGSNSSGSQLSEAQLAARHA 178 (502)
Q Consensus 104 g~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F--~pgRT~kQCR~RW~nl~---~L~P~Ik~~~~~kgpWT~EED~~Llea 178 (502)
++||+|||+.|+++|++||.|+|..|++..| +++||+.||++||+++. .+.|.++ ...+...+.++.++.+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~----~~~~~p~~~~~rv~~~ 76 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR----RGEPVPQDLLDRVLAA 76 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGC----CSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccc----cCCCCCHHHHHHHHHH
Confidence 4899999999999999999999999998633 68999999999999965 3578777 1348888888999999
Q ss_pred HHh
Q 010767 179 MSL 181 (502)
Q Consensus 179 v~~ 181 (502)
+..
T Consensus 77 ~a~ 79 (83)
T 2ckx_A 77 HAY 79 (83)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
No 20
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.55 E-value=4.4e-15 Score=129.24 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--cccCchhhhhHHHHhhhc---cCCCcccCCCCCCCCCH
Q 010767 95 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDF--KWDRTASQLSQRWNILRK---KHGNVILGSNSSGSQLS 169 (502)
Q Consensus 95 ~sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F--~pgRT~kQCR~RW~nl~~---L~P~Ik~~~~~kgpWT~ 169 (502)
.....++++++||+|||+.|+++|++||.|+|..|++.+| +++||+.||++||+++.+ +.|.++ ++.-++
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~-----rg~~~P 79 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQR-----RGEPVP 79 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTT-----TCCSCC
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccc-----cCCCCC
Confidence 3457788999999999999999999999999999999742 489999999999999643 368888 777777
Q ss_pred HHHHH-HHHHHHh
Q 010767 170 EAQLA-ARHAMSL 181 (502)
Q Consensus 170 EED~~-Lleav~~ 181 (502)
.|-.. +++++..
T Consensus 80 ~~~l~rv~~~~~~ 92 (105)
T 2aje_A 80 QELLNRVLNAHGY 92 (105)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 66544 8888887
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.3e-15 Score=116.79 Aligned_cols=56 Identities=25% Similarity=0.509 Sum_probs=50.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCc
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNV 157 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~I 157 (502)
.+...+++||+|||++|+++|++||.++|..||++ +++||++|||+||.+ +|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~~Rt~~qcr~r~~~--~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQ--MCTKTKEECEKHYMK--YFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH--HTTSCHHHHHHHHHH--HTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH--hCCCCHHHHHHHHHH--HccCCC
Confidence 34678999999999999999999999999999988 799999999999999 776543
No 22
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=9.1e-15 Score=113.85 Aligned_cols=48 Identities=31% Similarity=0.455 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccc-cCchhhhhHHHHh
Q 010767 100 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNI 149 (502)
Q Consensus 100 rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~p-gRT~kQCR~RW~n 149 (502)
...+++||+|||++|+++|++||.++|..||++ ++ +||++|||+||.+
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~--~~~~Rt~~qcr~r~~~ 54 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADY--VGNARTKEECRDHYLK 54 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHH--HCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--HCCCCCHHHHHHHHHH
Confidence 356789999999999999999999999999987 78 9999999999998
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-15 Score=116.93 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcc
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
+|.+..++++||+|||++|+++|++|| .+|..||+ + +|||++|||+||.+ +|+|.++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~--~gRt~~qcr~Rw~~--~l~~~~~ 58 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-I--IGRTAAQCLEHYEF--LLDKAAQ 58 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-H--HSSCHHHHHHHHHH--HHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-c--cCcCHHHHHHHHHH--HhChHhc
Confidence 578899999999999999999999999 59999998 2 58999999999999 8888887
No 24
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.44 E-value=6.9e-15 Score=120.35 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=47.5
Q ss_pred hHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 144 SQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 144 R~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
.-||.+ +|+|+++ +++||+|||++|++++.+ ||++ |+.||++| |||+++ |||||+.+.+
T Consensus 10 ~~~~~~--~ldP~i~-----k~~wT~EED~~L~~l~~~---~G~k--W~~IA~~l-gRt~~q-~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLY--FQGDRNH-----VGKYTPEEIEKLKELRIK---HGND--WATIGAAL-GRSASS-VKDRCRLMKD 68 (73)
T ss_dssp -----------CCCC-----CCSSCHHHHHHHHHHHHH---HSSC--HHHHHHHH-TSCHHH-HHHHHHHCSC
T ss_pred Ccceee--ecCCCCC-----CCCCCHHHHHHHHHHHHH---HCCC--HHHHHHHh-CCCHHH-HHHHHHHHHH
Confidence 458999 9999999 999999999999999999 9999 99999999 999999 9999986543
No 25
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=3.6e-14 Score=114.56 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcc
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
+..+..++++||+|||++|+++|++|| .+|..||++ +++||+.||++||++ ++.+.++
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~--~~~Rt~~q~k~r~~~--~l~~~~~ 59 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKL--IGSRTVLQVKSYARQ--YFKNKVK 59 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHH--HSSSCHHHHHHHHHH--HHHHHSC
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHH--HHHHHHh
Confidence 346788999999999999999999999 599999986 899999999999998 5544444
No 26
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3e-14 Score=115.44 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=51.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccccccccccCchhhhhHHHHhhhccCCCcc
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGE-----GNWANILRGDFKWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~-----~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
++...+++||+|||++|+++|.+||. .+|..||++ +++||++|||+||++ +|.+.++
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~--~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE--LGNRTAKQVASQVQK--YFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH--HSSSCHHHHHHHHHH--HHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH--hCCCCHHHHHHHHHH--HHHHHHh
Confidence 56778999999999999999999997 789999987 899999999999998 7776666
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=9.1e-14 Score=113.73 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 96 SMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 96 sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
++.++.++++||+|||++|+++|++|| .+|..||+. + |||+.|||+||+.|
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~--l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAA--L-GRSASSVKDRCRLM 66 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHH--H-TSCHHHHHHHHHHC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHH--h-CCCHHHHHHHHHHH
Confidence 478899999999999999999999999 669999997 7 99999999999974
No 28
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=2.5e-13 Score=105.65 Aligned_cols=56 Identities=9% Similarity=-0.080 Sum_probs=51.8
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 154 HGNVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 154 ~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
.|.++ +++||.|||++|+++|.+ || ++ |..||.+|+|||+.+ |++||+.+|++..+
T Consensus 3 ~p~~~-----k~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSG-----KVKWTHEEDEQLRALVRQ---FGQQD--WKFLASHFPNRTDQQ-CQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCC-----CSCCCHHHHHHHHHHHHH---TCTTC--HHHHHHHCSSSCHHH-HHHHHHHTSCSSSC
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHH---hCCCC--HHHHHHHccCCCHHH-HHHHHHHHcCCccC
Confidence 46777 999999999999999999 99 57 999999999999999 99999999998754
No 29
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=7.6e-13 Score=109.47 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=47.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCC
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGN 156 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~ 156 (502)
.+..+++||+|||++|+++|++|| ++|..||++ +++||..||++||.++...++.
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~--v~~RT~~qcr~r~~~~~i~d~~ 68 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEH--VGSRTQDECILHFLRLPIEDPY 68 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH--HSSCCHHHHHHHHTTSCCCCSS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHhcccccc
Confidence 345689999999999999999999 999999987 8899999999999995333333
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.32 E-value=7.4e-13 Score=117.55 Aligned_cols=63 Identities=25% Similarity=0.456 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCH
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLS 169 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~ 169 (502)
+.+..++++||+|||++|+++|.+|| .+|..||+. ++|||+.||++||++ ++.+.+. .++|+.
T Consensus 48 l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~--~l~~~~~-----~~~~~~ 110 (131)
T 3zqc_A 48 LDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKL--IPGRTDNAIKNRWNS--SISKRIS-----TNSNHK 110 (131)
T ss_dssp TSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTT--STTCCHHHHHHHHHH--TTGGGCC-----CCTTSC
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHH--HHHHHhh-----cCCCcc
Confidence 56788899999999999999999999 899999987 899999999999999 8888888 677765
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-13 Score=108.98 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=53.5
Q ss_pred ccCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 152 KKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 152 ~L~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
+|+|.++ +++||.|||++|++++.. ||.+ |..||. ++|||+++ ||+||+.+|++...
T Consensus 2 ~L~P~~~-----k~~WT~eED~~L~~~~~~---~g~~--W~~Ia~-~~gRt~~q-cr~Rw~~~l~~~~~ 58 (66)
T 2din_A 2 SSGSSGK-----KTEWSREEEEKLLHLAKL---MPTQ--WRTIAP-IIGRTAAQ-CLEHYEFLLDKAAQ 58 (66)
T ss_dssp CCSSSSS-----CCCCCHHHHHHHHHHHHH---CTTC--HHHHHH-HHSSCHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCCC-----CCCCCHHHHHHHHHHHHH---cCCC--HHHHhc-ccCcCHHH-HHHHHHHHhChHhc
Confidence 7899999 999999999999999999 9999 999999 99999999 99999998887643
No 32
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=2.7e-13 Score=109.43 Aligned_cols=57 Identities=5% Similarity=-0.077 Sum_probs=53.1
Q ss_pred cCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 153 KHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 153 L~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
.+|.++ +++||.|||++|+++|.+ ||++ |..||.+|||||+++ |||||+.++++...
T Consensus 3 ~~p~~~-----~~~WT~eEd~~l~~~~~~---~G~~--W~~Ia~~~~~Rt~~q-~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 3 SGSSGY-----SVKWTIEEKELFEQGLAK---FGRR--WTKISKLIGSRTVLQ-VKSYARQYFKNKVK 59 (72)
T ss_dssp CCCSSC-----CCCCCHHHHHHHHHHHHH---TCSC--HHHHHHHHSSSCHHH-HHHHHHHHHHHHSC
T ss_pred CCCCcC-----CCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHHHHh
Confidence 568888 999999999999999999 9999 999999999999999 99999998887654
No 33
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.24 E-value=6.2e-13 Score=100.52 Aligned_cols=49 Identities=10% Similarity=-0.031 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
+++||.|||++|+++|.+ ||. + |..||.+|+|||+.+ |++||+.+|+|+
T Consensus 3 ~~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~Rw~~~L~P~ 52 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQ---NGTDD--WKVIANYLPNRTDVQ-CQHRWQKVLNPE 52 (52)
T ss_dssp CCCCCHHHHHHHHHHHHH---HCSSC--HHHHHHTSTTCCHHH-HHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCC--HHHHHHHcCCCCHHH-HHHHHHHHcCcC
Confidence 799999999999999999 998 7 999999999999999 999999998874
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.23 E-value=6.6e-12 Score=106.94 Aligned_cols=51 Identities=31% Similarity=0.584 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
+.+..++++||+|||++|+++|.+|| .+|..||+. ++|||+.||++||+.+
T Consensus 50 l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 50 LNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred cCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 56778899999999999999999999 799999987 8999999999999983
No 35
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.22 E-value=1.2e-12 Score=99.15 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
+++||.|||++|+++|.+ ||.+ +|..||.+|+|||+.+ |++||+.+|+|+
T Consensus 3 k~~Wt~eED~~L~~~v~~---~G~~-~W~~Ia~~~~~Rt~~q-cr~Rw~~~L~P~ 52 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQK---YGPK-RWSVIAKHLKGRIGKQ-CRERWHNHLNPE 52 (52)
T ss_dssp CCSCCHHHHHHHHHHHHH---HCTT-CHHHHHTTSTTCCHHH-HHHHHHHTTSCC
T ss_pred CCCCCHHHHHHHHHHHHH---HCcC-hHHHHHHHcCCCCHHH-HHHHHHHHcCcC
Confidence 799999999999999999 9972 3999999999999999 999999999874
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.20 E-value=8.8e-12 Score=110.09 Aligned_cols=53 Identities=34% Similarity=0.622 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhc
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~ 152 (502)
+.+..++++||+|||++|+++|++|| .+|..||+. ++|||+.||++||..|.+
T Consensus 56 l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 56 LAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKF--FPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp TSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTT--STTCCHHHHHHHHHHHHH
T ss_pred cccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999 899999987 899999999999998644
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.83 E-value=1.4e-12 Score=109.63 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=52.6
Q ss_pred ccCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 152 KKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 152 ~L~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
.++|.++ +++||.|||++|+++|.+ ||++ |..||.+|+|||+++ |||||+.++++.
T Consensus 9 ~~~p~~~-----~~~WT~eEd~~l~~~~~~---~G~~--W~~IA~~l~gRt~~q-~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLY-----FQGWTEEEMGTAKKGLLE---HGRN--WSAIARMVGSKTVSQ-CKNFYFNYKKRQ 64 (89)
Confidence 4678888 999999999999999999 9999 999999999999999 999999999875
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.20 E-value=7.9e-12 Score=107.38 Aligned_cols=53 Identities=25% Similarity=0.603 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhhhc
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl~~ 152 (502)
+.+..++++||+|||++|+.+|.+|| .+|..||+. ++|||+.||++||..+.+
T Consensus 47 L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~--l~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 47 INPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKF--LKNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp SSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHH--HSSSCHHHHHHHHHHHHH
T ss_pred HcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHH--CCCCCHHHHHHHHHHHHh
Confidence 56778899999999999999999999 699999987 899999999999998533
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-12 Score=109.23 Aligned_cols=51 Identities=24% Similarity=0.194 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 97 MPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 97 l~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
..+...+++||+|||++|+++|.+|| .+|..||.. ++|||+.||++||.++
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~--l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARM--VGSKTVSQCKNFYFNY 60 (89)
Confidence 35667899999999999999999999 589999987 8999999999999983
No 40
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=6.8e-12 Score=102.58 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=45.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCchhhhhHHHHhhh
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILR 151 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~---~nW~~IAk~~F~pgRT~kQCR~RW~nl~ 151 (502)
.+..+++||+|||++|+.++.+||. .+|..||++ ++|||..||++||.+|.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~--vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC--VPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG--CSSSCHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999994 579999987 89999999999999853
No 41
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=5.2e-12 Score=101.12 Aligned_cols=56 Identities=4% Similarity=-0.123 Sum_probs=51.6
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 154 HGNVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 154 ~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
.|.++ +++||.|||++|+++|.+ || .+ |..||.+|+|||+.+ |++||+.+|++...
T Consensus 4 ~~~~k-----~~~Wt~eED~~L~~~v~~---~G~~~--W~~Ia~~l~~Rt~~q-cr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGK-----GGVWRNTEDEILKAAVMK---YGKNQ--WSRIASLLHRKSAKQ-CKARWYEWLDPSIK 60 (70)
T ss_dssp CSCST-----TCCCCHHHHHHHHHHHHH---TCSSC--HHHHHHHSTTCCHHH-HHHHHHHTSCSSSC
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHhcCCCHHH-HHHHHHHHcCCccc
Confidence 46677 899999999999999999 99 67 999999999999999 99999999998764
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.14 E-value=2.6e-11 Score=96.53 Aligned_cols=51 Identities=31% Similarity=0.491 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccc-cccccCchhhhhHHHHhhhc
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRG-DFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~-~F~pgRT~kQCR~RW~nl~~ 152 (502)
+.+++||+|||+.|+++|++||. +|..|+.. -|+++||..++++||++|.+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 37899999999999999999995 99999964 45789999999999999754
No 43
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.13 E-value=6.1e-12 Score=98.25 Aligned_cols=53 Identities=11% Similarity=-0.027 Sum_probs=48.4
Q ss_pred CCcccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCCCCCCCCccccCCCCCcCCC
Q 010767 155 GNVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 155 P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
+.++ +++||.|||++|+++|.+ || .+ |..||.+|+|||+.+ |++||+.+|.+.
T Consensus 4 ~~~~-----~~~WT~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~Rt~~q-cr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSG-----DPSWTAQEEMALLEAVMD---CGFGN--WQDVANQMCTKTKEE-CEKHYMKYFSGP 57 (60)
T ss_dssp CCCC-----CSSSCHHHHHHHHHHHHH---TCTTC--HHHHHHHHTTSCHHH-HHHHHHHHTTCS
T ss_pred CCCC-----CCCCCHHHHHHHHHHHHH---HCcCc--HHHHHHHhCCCCHHH-HHHHHHHHccCC
Confidence 4566 899999999999999999 99 67 999999999999999 999999887654
No 44
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.11 E-value=6.1e-12 Score=100.55 Aligned_cols=58 Identities=12% Similarity=-0.018 Sum_probs=52.3
Q ss_pred ccCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCC--CCCCCCccccCCCCCcCCCcc
Q 010767 152 KKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA--GTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 152 ~L~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~Lp--GRTdn~sIKNRw~s~lr~~~s 220 (502)
+..+..+ +++||.|||++|+++|.+ || .+ |..||.+|+ |||+++ |++||+.+|++...
T Consensus 3 ~~~~~~~-----r~~WT~eED~~L~~~v~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 3 EKHRARK-----RQAWLWEEDKNLRSGVRK---YGEGN--WSKILLHYKFNNRTSVM-LKDRWRTMKKLKLI 63 (69)
T ss_dssp CTTCSSS-----CCCCCHHHHHHHHHHHHH---HCSSC--HHHHHHHSCCSSCCHHH-HHHHHHHHHHTSCC
T ss_pred CCCCCCC-----CCCCCHHHHHHHHHHHHH---HCCCc--HHHHHHHcCcCCCCHHH-HHHHHHHHcCCCCC
Confidence 3455666 899999999999999999 99 57 999999999 999999 99999999998865
No 45
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.09 E-value=8.1e-12 Score=95.08 Aligned_cols=48 Identities=10% Similarity=-0.044 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCC--CCCCCCccccCCCCCcCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA--GTTSSATMNNPVPSTANA 217 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~Lp--GRTdn~sIKNRw~s~lr~ 217 (502)
+++||+|||++|+++|.. || .+ |..|+.+|+ |||+.+ |++||.++++.
T Consensus 2 r~~WT~eEd~~L~~~v~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~~~~k~ 52 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRK---YGEGN--WSKILLHYKFNNRTSVM-LKDRWRTMKKL 52 (53)
T ss_dssp CCCCCHHHHHHHHHHHHH---HCTTC--HHHHHHHSCCSSCCHHH-HHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHcCCCCCCHHH-HHHHHHHHHcc
Confidence 789999999999999999 99 57 999999999 999999 99999988764
No 46
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=9.1e-12 Score=100.81 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=49.5
Q ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCC------CCCchHHHhhcCCCCCCCCccccCCCCCcCCCc
Q 010767 154 HGNVILGSNSSGSQLSEAQLAARHAMSLALDMP------VKNITASCTNTTAGTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 154 ~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G------~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~ 219 (502)
.|.++ +++||.|||++|+++|.+ || .+ |..||.+|+|||+.+ |++||+.+|.+..
T Consensus 3 ~p~~~-----~~~WT~eEd~~L~~~v~~---~g~~~~~~~~--W~~IA~~~~~Rt~~q-cr~r~~~~l~~~~ 63 (75)
T 2yum_A 3 SGSSG-----NQLWTVEEQKKLEQLLIK---YPPEEVESRR--WQKIADELGNRTAKQ-VASQVQKYFIKLT 63 (75)
T ss_dssp CCCCC-----SSCCCHHHHHHHHHHHHH---SCCCSCHHHH--HHHHHHHHSSSCHHH-HHHHHHHHHGGGS
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHH---hCCCCCCccc--HHHHHHHhCCCCHHH-HHHHHHHHHHHHH
Confidence 46677 899999999999999999 99 56 999999999999999 9999988877654
No 47
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.01 E-value=6.7e-11 Score=100.82 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCchhhhhHHHHhh
Q 010767 102 KRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~---~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
.+++||+|||++|+.++.+||. .+|..||+. ++|||..||++||.+|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~--vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARA--VEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH--STTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 3679999999999999999983 569999998 8999999999999986
No 48
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.98 E-value=3.5e-11 Score=95.68 Aligned_cols=51 Identities=6% Similarity=-0.047 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCC-CCchHHHhhcCC--CCCCCCccccCCCCCcCCCc
Q 010767 163 SSGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTTA--GTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 163 ~kgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~Lp--GRTdn~sIKNRw~s~lr~~~ 219 (502)
++++||+|||++|+++|.+ ||. + |..|+.+++ |||+.+ ||+||.+++++..
T Consensus 10 kk~~WT~eED~~L~~~V~~---~G~~~--W~~Ia~~~~~~~Rt~~q-cr~Rw~nl~k~gl 63 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQK---YGEGN--WAAISKNYPFVNRTAVM-IKDRWRTMKRLGM 63 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHH---HCTTC--HHHHHHHSCCSSCCHHH-HHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHc---cCCCc--hHHHHhhcCCCCCCHHH-HHHHHHHHhccCC
Confidence 4899999999999999999 995 6 999999976 999999 9999998887653
No 49
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.95 E-value=8.1e-11 Score=91.50 Aligned_cols=45 Identities=11% Similarity=0.004 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC-CCCchHHHhhcCC-CCCCCCccccCCCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMP-VKNITASCTNTTA-GTTSSATMNNPVPST 214 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G-~kk~Ws~IA~~Lp-GRTdn~sIKNRw~s~ 214 (502)
+++||.|||++|+++|.+ || .+ |..||.+|+ |||+.+ |++||..+
T Consensus 9 ~~~WT~eED~~L~~~v~~---~G~~~--W~~IA~~~~~~Rt~~q-cr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACET---LGLGN--WADIADYVGNARTKEE-CRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHH---TTTTC--HHHHHHHHCSSCCHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---HCcCC--HHHHHHHHCCCCCHHH-HHHHHHHH
Confidence 689999999999999999 99 67 999999999 999999 99999754
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.87 E-value=1.7e-10 Score=94.34 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC----CCCchHHHhhcCCCCCCCCccccCCCCCcCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANA 217 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G----~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~ 217 (502)
+++||.|||++|++++.+ || ++ |.+||.+|||||.++ |++||+.++..
T Consensus 18 ~~~WT~eEd~~L~~al~~---~g~~~~~r--W~~IA~~vpGRT~~q-cr~Ry~~L~~d 69 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQ---YPRGSSDC--WDKIARCVPSKSKED-CIARYKLLVSG 69 (73)
T ss_dssp SCCCCHHHHHHHHHHHHH---SCSSSHHH--HHHHGGGCSSSCHHH-HHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHH---cCCCCCch--HHHHHHHcCCCCHHH-HHHHHHHHHHc
Confidence 799999999999999999 98 67 999999999999999 99999876643
No 51
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.4e-09 Score=84.01 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 95 GSMPPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 95 ~sl~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
.+.+.++...+||+|||+++.+++.+|| .+|..||.. +++||..||+++|..
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~--l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASY--LERKSVPDCVLYYYL 55 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHH--CTTSCHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHH--cCCCCHHHHHHHHHH
Confidence 3457778899999999999999999999 799999976 899999999999986
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.80 E-value=4.6e-10 Score=109.90 Aligned_cols=53 Identities=8% Similarity=0.052 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCC----chHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKN----ITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk----~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
+++||+|||++|+++|++ +|++. .|..||++|||||+++ |||||+.+|++.+-
T Consensus 8 k~~FT~EED~~Ile~v~k---~Gn~r~ghk~W~~IAk~LpGRT~ns-IRnRw~~~L~~~ln 64 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRK---NPTRRTTHTLYDEISHYVPNHTGNS-IRHRFRVYLSKRLE 64 (246)
T ss_dssp CCCCCHHHHHHHHHHHHT---SGGGTTCSHHHHHHTTTSTTSCHHH-HHHHHHHTTGGGCC
T ss_pred CCCCCHHHHHHHHHHHHH---hCcCccccccHHHHHHHcCCCCHHH-HHHHHHHHHhhhcc
Confidence 789999999999999999 98862 4999999999999999 99999999999874
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.74 E-value=1e-09 Score=87.38 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHh---hcCCCCCCCCccccCCCCCcCCC
Q 010767 162 NSSGSQLSEAQLAARHAMSLALDMPVKNITASCT---NTTAGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 162 ~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA---~~LpGRTdn~sIKNRw~s~lr~~ 218 (502)
.++.+||.|||+.|++.|++ ||.+ |..|+ .+++|||+.+ ||+||+.+++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k---~G~~--W~~I~~~y~f~~~RT~Vd-LKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKT---MGNH--WNSILWSFPFQKGRRAVD-LAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHH---HCSC--HHHHHHHSCCCTTCCHHH-HHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---HhHh--HHHHHHhCCCccCcccch-HHHHHHHHHhcc
Confidence 35789999999999999999 9998 99999 6889999999 999999888764
No 54
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.74 E-value=1.9e-09 Score=89.07 Aligned_cols=45 Identities=7% Similarity=-0.048 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 214 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~ 214 (502)
+++||.|||++|+++|.+ ||.+ |..||.+++|||+.+ |++||..+
T Consensus 18 ~~~WT~eEd~~Ll~~v~~---~G~~--W~~IA~~v~~RT~~q-cr~r~~~~ 62 (79)
T 2yus_A 18 GREWTEQETLLLLEALEM---YKDD--WNKVSEHVGSRTQDE-CILHFLRL 62 (79)
T ss_dssp SCCCCHHHHHHHHHHHHH---SSSC--HHHHHHHHSSCCHHH-HHHHHTTS
T ss_pred CCCcCHHHHHHHHHHHHH---hCCC--HHHHHHHcCCCCHHH-HHHHHHHh
Confidence 789999999999999999 9977 999999999999999 99999987
No 55
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.64 E-value=1.8e-09 Score=90.23 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCC-CCchHHHhhc----CCCCCCCCccccCCCCCcCCCc
Q 010767 165 GSQLSEAQLAARHAMSLALDMPV-KNITASCTNT----TAGTTSSATMNNPVPSTANAEA 219 (502)
Q Consensus 165 gpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~----LpGRTdn~sIKNRw~s~lr~~~ 219 (502)
.+||.|||++|+++|.+ ||. + |+.|+.. |+|||+++ ||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k---~G~g~--W~~I~~~~~~~~~~RT~~~-lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEH---LGTGR--WRDVKMRAFDNADHRTYVD-LKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHH---HCSSC--HHHHHHHHCTTCTTSCHHH-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---HCCCC--cHHHHHhhccccCCCCHHH-HHHHHHHHHHhcc
Confidence 47999999999999999 998 6 9999996 89999999 9999999987553
No 56
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.62 E-value=3.1e-09 Score=94.57 Aligned_cols=48 Identities=6% Similarity=-0.058 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCchHHHhhcC----CCCCCCCccccCCCCCcCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTT----AGTTSSATMNNPVPSTANA 217 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~L----pGRTdn~sIKNRw~s~lr~ 217 (502)
+++||.|||++|+++|.+ ||. + |+.|+..+ +|||+++ ||+||+++++.
T Consensus 17 r~~WT~EEd~~L~~gV~k---~G~G~--W~~Ia~~~~~~f~~RT~v~-lKdRWrnllk~ 69 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEH---LGTGR--WRDVKMRAFDNADHRTYVD-LKDKWKTLVHT 69 (121)
T ss_dssp SCCCCHHHHHHHHHHHHH---HGGGC--HHHHHHHHCSCCSSCCSHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---HCCCC--HHHHHHHhccccCCCCHHH-HHHHHHHHHhh
Confidence 899999999999999999 998 7 99999984 9999999 99999999975
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.58 E-value=4.3e-09 Score=89.72 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCC----CCCchHHHhhcCCCCCCCCccccCCCCCcCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANA 217 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G----~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~ 217 (502)
+++||.|||++|.+++.. || ++ |.+||.+|||||+++ |++||+.++..
T Consensus 8 ~~~WT~eEd~~L~~al~~---~~~~~~~r--W~~IA~~vpGRT~~q-~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV---YDKDTPDR--WANVARAVEGRTPEE-VKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH---SCTTCTTH--HHHHHHHSTTCCHHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---cCCCCCch--HHHHHHHcCCCCHHH-HHHHHHHHHHH
Confidence 579999999999999999 85 66 999999999999999 99999987644
No 58
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.57 E-value=5.8e-09 Score=90.78 Aligned_cols=51 Identities=6% Similarity=-0.072 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCchHHHhhcC----CCCCCCCccccCCCCCcCCCcc
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTT----AGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~L----pGRTdn~sIKNRw~s~lr~~~s 220 (502)
+++||.|||++|+++|.+ ||. + |+.|+..+ +|||+++ ||+||.++++....
T Consensus 13 r~~WT~EEd~~L~~gV~k---~G~g~--W~~I~~~~~~~f~~RT~v~-lKdrWrnllk~~~~ 68 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEK---LGTGR--WRDVKLCAFEDADHRTYVD-LKDKWKTLVHTAKI 68 (105)
T ss_dssp CCSCCHHHHHHHHHHHHH---HCSSS--HHHHHSSSSSSTTCCCHHH-HHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCC--hHHHHHHhccccCCCCHHH-HHHHHHHHHhhccC
Confidence 899999999999999999 998 7 99999976 8999999 99999999976543
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=6.8e-08 Score=78.66 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCchhhhhHHHHhhhcc
Q 010767 101 KKRKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNILRKK 153 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~---~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L 153 (502)
.+.+.||.|||++|..++.+|+. .+|..||.+ + |||..||+.||..|...
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~--l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE--L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH--H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--h-CCCHHHHHHHHHHHHHh
Confidence 35779999999999999999984 469999987 5 89999999999986443
No 60
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.44 E-value=1.3e-08 Score=90.82 Aligned_cols=49 Identities=4% Similarity=-0.085 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCchHHHhhcC----CCCCCCCccccCCCCCcCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTT----AGTTSSATMNNPVPSTANAE 218 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~L----pGRTdn~sIKNRw~s~lr~~ 218 (502)
+++||.|||++|+++|++ ||. + |+.|+..+ +|||+.+ ||+||.++++..
T Consensus 31 r~~WT~EEd~~L~~gV~k---~G~g~--W~~I~~~~~~~~~~RT~vd-lKdRWrnllk~~ 84 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEH---LGTGR--WRDVKFRAFENVHHRTYVD-LKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCHHHHHHHHHHHHH---HSSSC--HHHHHHHHHSSSCCCCHHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---HCCCC--hHHHHHHhccccCCCCHHH-HHHHHHHHHhhc
Confidence 799999999999999999 998 6 99999974 9999999 999999999654
No 61
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.32 E-value=2.7e-07 Score=72.38 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccccCchhhhhHHHHhhhcc
Q 010767 103 RKPWTAEEDLELISAVQKC--------GEGNWANILR-GDFKWDRTASQLSQRWNILRKK 153 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~--------G~~nW~~IAk-~~F~pgRT~kQCR~RW~nl~~L 153 (502)
|.+||+|||+.|+++|.+| |..-|+.+++ . +++||-.+||+||.+ +|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~--~~~HtwqSwRdRy~k--~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS--LTQHSWQSLKDRYLK--HL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC--SSSCCSHHHHHHHHH--HT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH--CCCCCHHHHHHHHHH--Hc
Confidence 6799999999999999999 4444999999 5 799999999999998 65
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.29 E-value=4.4e-07 Score=88.36 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=45.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
..+...+||+||++++++++.+|| .+|..||+. +++||..||+.+|.++
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~--VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDV--IGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHH--HSSCCHHHHHHHHHHT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 445688999999999999999999 899999997 8999999999999983
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.5e-07 Score=73.83 Aligned_cols=47 Identities=4% Similarity=-0.158 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
.++||+||++++++++.+ ||.+ |..||.+|||||..+ |.++|+...+
T Consensus 12 ~~~WT~eE~~~F~~~~~~---~gk~--w~~Ia~~l~~rt~~~-~v~~Yy~~Kk 58 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQ---HPKN--FGLIASYLERKSVPD-CVLYYYLTKK 58 (61)
T ss_dssp CCSCCHHHHHHHHHHHHH---STTC--HHHHHHHCTTSCHHH-HHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHH---hCCC--HHHHHHHcCCCCHHH-HHHHHHHhcC
Confidence 579999999999999999 9988 999999999999999 9999875443
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.09 E-value=1.4e-06 Score=71.34 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCchhhhhHHHHhh
Q 010767 103 RKPWTAEEDLELISAVQKCGE---GNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~---~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
...||.|||++|..++..|+. ++|.+||.. +++||..+|+.||..|
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~--V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAA--VGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH--TTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 457999999999999999985 469999987 8999999999999984
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.94 E-value=1.3e-06 Score=71.12 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCC----CCCchHHHhhcCCCCCCCCccccCCCCCcCC
Q 010767 162 NSSGSQLSEAQLAARHAMSLALDMP----VKNITASCTNTTAGTTSSATMNNPVPSTANA 217 (502)
Q Consensus 162 ~~kgpWT~EED~~Lleav~~al~~G----~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~ 217 (502)
..++.||.|||++|.+++.+ || .+ |..||.+| |||..+ |++||..+...
T Consensus 6 ~~~~~WT~eE~k~fe~al~~---~p~~t~~R--W~~IA~~l-gRt~~e-V~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVK---FPGGTPGR--WEKIAHEL-GRSVTD-VTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SCTTCTTH--HHHHHHHH-TSCHHH-HHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCCcH--HHHHHHHh-CCCHHH-HHHHHHHHHHh
Confidence 34689999999999999999 85 56 99999998 999999 99999877655
No 66
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.93 E-value=1e-06 Score=75.30 Aligned_cols=62 Identities=3% Similarity=-0.049 Sum_probs=54.3
Q ss_pred chhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcC-----CCCCCCCccccCCCC
Q 010767 139 TASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHAMSLALDMPVKNITASCTNTT-----AGTTSSATMNNPVPS 213 (502)
Q Consensus 139 T~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~L-----pGRTdn~sIKNRw~s 213 (502)
...=+.+||.+ +|. ..+||.||+..|+++++. |+.+ |..|+.++ ++||..+ ||+||+.
T Consensus 16 i~~yt~eeY~~--~L~---------~~~WTkEETd~Lf~L~~~---fdlR--W~vI~DRy~~~~~~~Rt~Ed-LK~RyY~ 78 (93)
T 3hm5_A 16 VPVYSEQEYQL--YLH---------DDAWTKAETDHLFDLSRR---FDLR--FVVIHDRYDHQQFKKRSVED-LKERYYH 78 (93)
T ss_dssp CCCCCHHHHHH--HTC---------BTTBCHHHHHHHHHHHHH---TTTC--HHHHHHHSCTTTSCCCCHHH-HHHHHHH
T ss_pred CCccCHHHHHH--HcC---------CCCCCHHHHHHHHHHHHH---hCCC--eeeehhhhccCCCCCCCHHH-HHHHHHH
Confidence 44668899999 653 378999999999999999 9999 99999999 5899999 9999997
Q ss_pred CcCC
Q 010767 214 TANA 217 (502)
Q Consensus 214 ~lr~ 217 (502)
+.++
T Consensus 79 v~~~ 82 (93)
T 3hm5_A 79 ICAK 82 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.91 E-value=1.1e-06 Score=85.66 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCCcCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPSTANA 217 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr~ 217 (502)
..+||.||++++++++.+ ||+. |..||+.+++||.++ |||+|+...++
T Consensus 133 s~~WTeEE~~lFleAl~k---YGKD--W~~IAk~VgTKT~~Q-cKnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRK---YGRD--FQAISDVIGNKSVVQ-VKNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHH---HSSC--HHHHHHHHSSCCHHH-HHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHcCCCCHHH-HHHHHHHHHHH
Confidence 579999999999999999 9999 999999999999999 99999977766
No 68
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.65 E-value=1.5e-05 Score=65.49 Aligned_cols=46 Identities=15% Similarity=0.439 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CccccccccccccCchhhhhHHHHh
Q 010767 102 KRKPWTAEEDLELISAVQKCGEG---NWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~~---nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
....||.|||++|..++..|+.+ +|.+||.. ++|||..+|+.+|..
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~--VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY--VKGRTPEEVKKHYEL 67 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG--SCSSCHHHHHGGGC-
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH--cCCCCHHHHHHHHHH
Confidence 45689999999999999999854 69999998 899999999999974
No 69
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.59 E-value=3.3e-05 Score=65.99 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccc-c--cccCchhhhhHHHHhhhc
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGD-F--KWDRTASQLSQRWNILRK 152 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~-F--~pgRT~kQCR~RW~nl~~ 152 (502)
..+||.|||..|++++++|| .+|..|+..+ + .++||..++++||..+++
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 38999999999999999999 9999999872 0 158999999999997533
No 70
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.51 E-value=2.8e-05 Score=64.12 Aligned_cols=59 Identities=20% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC------CC---Cccccccccc--cccCchhhhhHHHHhhhccCCCcc
Q 010767 100 RKKRKPWTAEEDLELISAVQKCG------EG---NWANILRGDF--KWDRTASQLSQRWNILRKKHGNVI 158 (502)
Q Consensus 100 rkkkg~WT~EEDe~Ll~lV~k~G------~~---nW~~IAk~~F--~pgRT~kQCR~RW~nl~~L~P~Ik 158 (502)
+++...||.+|-..|+++...+. .. .|..||..+- .-.|++.||+++|.+|...+-.++
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k 70 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK 70 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999997532 11 3999998721 237999999999999877666666
No 71
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.49 E-value=2.5e-05 Score=63.98 Aligned_cols=53 Identities=6% Similarity=0.045 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCC--CchHHHhhcCCCCCCCCccccCCCCCcCCCcc
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVK--NITASCTNTTAGTTSSATMNNPVPSTANAEAS 220 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~k--k~Ws~IA~~LpGRTdn~sIKNRw~s~lr~~~s 220 (502)
...||.+|+++|.+++.. |+.. +.|..||..++|||..+ |+.||..++++.-+
T Consensus 8 ~~~WT~eE~k~fe~ALa~---~~~~tp~rWe~IA~~V~gKT~eE-~~~hY~~l~~~~~s 62 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFAS---LPKHKPGFWSEVAAAVGSRSPEE-CQRKYMENPRGKGS 62 (73)
T ss_dssp SSCCCHHHHHHHHHHHHH---SCSSSSSHHHHHHHHTTTSCHHH-HHHHHHHSSSSSCC
T ss_pred CCCCCHHHHHHHHHHHHH---CCCCCccHHHHHHHHcCCCCHHH-HHHHHHHHHhcccc
Confidence 568999999999999998 7542 23999999999999999 99999988777655
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00014 Score=57.35 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=44.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
.++.....||+||-++..+++.+|| .+|..|++. |+++|+..||.+-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~-~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKE-LLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHH-SCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHH-HcCCCcHHHHHHHHhc
Confidence 5677889999999999999999999 799999983 3799999999988875
No 73
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.45 E-value=9.5e-06 Score=86.43 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVPST 214 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~s~ 214 (502)
...||.||-+++++++.+ ||.. |..||..+..||..+ ||++|+..
T Consensus 380 ~~~WT~eE~~~f~~al~~---yGkd--w~~IA~~VgTKT~~Q-vk~fy~~~ 424 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRK---YGRD--FQAISDVIGNKSVVQ-VKNFFVNY 424 (482)
T ss_dssp CSCCCHHHHHHHHHHHHH---HTTC--HHHHHHHHSSCCHHH-HHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH---HCcC--HHHHHHHhCCCCHHH-HHHHHHHH
Confidence 469999999999999999 9998 999999999999999 99998743
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.41 E-value=3.4e-05 Score=62.51 Aligned_cols=47 Identities=2% Similarity=-0.173 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCC-CchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 165 GSQLSEAQLAARHAMSLALDMPVK-NITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 165 gpWT~EED~~Lleav~~al~~G~k-k~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
-.||.|||+.|+..+++ .|.. +.|+.||..| +|+.++ |+|||..+++
T Consensus 15 vlWTReeDR~IL~~cq~---~G~s~~tfa~iA~~L-nks~~Q-V~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQK---RGPSSKTFAYLAAKL-DKNPNQ-VSERFQQLMK 62 (70)
Confidence 47999999999999999 7772 2399999999 999999 9999987764
No 75
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.28 E-value=0.00014 Score=77.54 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
+...+||.||-+++++++.+|| .+|..||+. +..||..|||..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~--VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDV--IGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHH--HSSCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 4678999999999999999999 799999988 8899999999999873
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.12 E-value=0.00066 Score=57.87 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCchhhhhHHHHhhhccC
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCGE--GNWANILRGDFKWDRTASQLSQRWNILRKKH 154 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G~--~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~ 154 (502)
+..+-..||.|||+.++..+++.|. ..|..||+. +.+|+..|.++||+.|.+|.
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~--L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ--LGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH--HSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH--HccCCHHHHHHHHHHHHHHH
Confidence 3456789999999999999999984 369999998 67899999999999866654
No 77
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.10 E-value=7.7e-05 Score=58.42 Aligned_cols=51 Identities=2% Similarity=-0.108 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCC-----CCCCchHHHhh-cCCCCCCCCccccCCCCCcC
Q 010767 164 SGSQLSEAQLAARHAMSLALDM-----PVKNITASCTN-TTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~-----G~kk~Ws~IA~-~LpGRTdn~sIKNRw~s~lr 216 (502)
+.+||.|||++|++.|...-.. |++ .|..++. .+|++|-.+ +|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~-iwk~la~~~~~~HtwqS-wRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNA-LWKAMEKSSLTQHSWQS-LKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSH-HHHHHHHSCSSSCCSHH-HHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHH-HHHHHHHhHCCCCCHHH-HHHHHHHHcc
Confidence 5789999999999999992111 333 7999999 799999988 9999987765
No 78
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.07 E-value=0.0001 Score=59.73 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCchhhhhHHHHhhhccCC
Q 010767 102 KRKPWTAEEDLELISAVQKCGE--GNWANILRGDFKWDRTASQLSQRWNILRKKHG 155 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~--~nW~~IAk~~F~pgRT~kQCR~RW~nl~~L~P 155 (502)
.-..||.|||+.|+..+++.|. ..|..||+. + +|++.|+.+||+.|..|.-
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~--L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK--L-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 4678999999999999999995 359999987 5 9999999999998766653
No 79
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.85 E-value=8.3e-05 Score=63.34 Aligned_cols=49 Identities=6% Similarity=-0.094 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC-CCchHHHhhcCCCCCCCCccccCCCCCcC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPV-KNITASCTNTTAGTTSSATMNNPVPSTAN 216 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~-kk~Ws~IA~~LpGRTdn~sIKNRw~s~lr 216 (502)
---||.|||+.|+..+++ .|. -+-|+.||..|.+|+.++ |+|||+.+++
T Consensus 33 VvlWTRe~DR~IL~~cQ~---~G~s~~tFa~iA~~L~Nks~nq-V~~RFq~Lm~ 82 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQE---QGAQPHTFSVISQQLGNKTPVE-VSHRFRELMQ 82 (95)
T ss_dssp CSSSCHHHHHHHHHHHHH---TTSCTTTHHHHHHHHSSCCHHH-HHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHh---cCCChhHHHHHHHHHccCCHHH-HHHHHHHHHH
Confidence 358999999999999999 877 233999999999999999 9999986653
No 80
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.85 E-value=0.00029 Score=71.32 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=77.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhH-------HH-----------------------Hhh--
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQ-------RW-----------------------NIL-- 150 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~-------RW-----------------------~nl-- 150 (502)
.+.||..|...++.++.+||..+|..||.. +.|+|...++. || ..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e--v~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~ 187 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKD--VEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKK 187 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTS--STTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999999999999999988 67888776642 22 000
Q ss_pred -------hccCC----CcccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC--CchHHHh------------hcCCCCCCCC
Q 010767 151 -------RKKHG----NVILGSNSSGSQLSEAQLAARHAMSLALDMPVK--NITASCT------------NTTAGTTSSA 205 (502)
Q Consensus 151 -------~~L~P----~Ik~~~~~kgpWT~EED~~Lleav~~al~~G~k--k~Ws~IA------------~~LpGRTdn~ 205 (502)
.+.+| .|+.+.++...||.+||..|+-++.+ ||-. .+|..|. -++..||...
T Consensus 188 ~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k---~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~e 264 (304)
T 1ofc_X 188 ALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHK---LGFDKENVYEELRAAIRASPQFRFDWFIKSRTALE 264 (304)
T ss_dssp HHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHH---HCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHH
T ss_pred HHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHH---hcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 01112 22323345679999999988888888 6651 2699997 2567799888
Q ss_pred ccccCCCCCcC
Q 010767 206 TMNNPVPSTAN 216 (502)
Q Consensus 206 sIKNRw~s~lr 216 (502)
|..|.+.+++
T Consensus 265 -l~rRc~tLi~ 274 (304)
T 1ofc_X 265 -LQRRCNTLIT 274 (304)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 8888776664
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.71 E-value=0.0016 Score=52.40 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 100 RKKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 100 rkkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
+.....||+||-++..+++.+|| .+|..|++. |+++|+..||.+-|..
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~-~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG-KDFNDIRQD-FLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHT-TCSSSCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHH-HcCCCCHHHHHHHHHh
Confidence 45678999999999999999999 799999983 3799999999998875
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.63 E-value=0.0014 Score=55.52 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHh
Q 010767 101 KKRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNI 149 (502)
Q Consensus 101 kkkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~n 149 (502)
.....||+||.++..++...|| .+|..|+.. +++||..||-+-|..
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~--l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHP-KNFGLIASF--LERKTVAECVLYYYL 86 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHST-TCHHHHHHT--CTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH--cCCCCHHHHHHHHhc
Confidence 4578999999999999999999 899999876 899999999998875
No 83
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.59 E-value=0.0002 Score=58.87 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC----CCchHHHhhcCCCCCCCCccccCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPV----KNITASCTNTTAGTTSSATMNNPVP 212 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~----kk~Ws~IA~~LpGRTdn~sIKNRw~ 212 (502)
...||.+|++++..++.. |+. + |.+||..+||||-.+ |+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~---yp~~tpdR--WekIA~~VpGKT~eE-Vk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSF---TNKDTPDR--WKKVAQYVKGRTPEE-VKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSS---SCSSCCSS--STTTGGGSCSSCHHH-HHGGGC
T ss_pred CCCCCHHHHHHHHHHHHH---CCCCCCcH--HHHHHHHcCCCCHHH-HHHHHH
Confidence 458999999999888888 654 6 999999999999999 998874
No 84
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.0011 Score=52.13 Aligned_cols=43 Identities=0% Similarity=-0.181 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhh-cCCCCCCCCccccCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTN-TTAGTTSSATMNNPVP 212 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~-~LpGRTdn~sIKNRw~ 212 (502)
...||.||-++..+++.+ ||.. |..|++ .+++||-.+ |..+|+
T Consensus 9 ~~~WT~eE~~~Fe~~l~~---yGKd--f~~I~~~~v~~Kt~~~-~v~fYY 52 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQ---YGKN--FFRIRKELLPNKETGE-LITFYY 52 (63)
T ss_dssp CCSCCHHHHHHHHHHHHH---TCSC--HHHHHHHSCTTSCHHH-HHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH---hCcc--HHHHHHHHcCCCcHHH-HHHHHh
Confidence 789999999999999999 9999 999999 599999988 876665
No 85
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.57 E-value=0.0072 Score=51.63 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccc-c--cccCchhhhhHHHHhhh
Q 010767 104 KPWTAEEDLELISAVQKCGEGNWANILRGD-F--KWDRTASQLSQRWNILR 151 (502)
Q Consensus 104 g~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~-F--~pgRT~kQCR~RW~nl~ 151 (502)
..||.||...|.+++++|+ .+|-.|+..+ + ...|+--++++||..++
T Consensus 31 ~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999 9999999872 1 14799999999998753
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.47 E-value=0.024 Score=53.09 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC--CCCccccccccccccCchhhhhH
Q 010767 99 PRKKRKPWTAEEDLELISAVQKCG--EGNWANILRGDFKWDRTASQLSQ 145 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll~lV~k~G--~~nW~~IAk~~F~pgRT~kQCR~ 145 (502)
|+.....||..|=..|+.++.+|| .++|..|++..-+.+++...+++
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 455788999999999999999999 67899998652235666665553
No 87
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.35 E-value=0.018 Score=46.08 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=44.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC--ccccccccccccCchhhhhHHHHhh
Q 010767 98 PPRKKRKPWTAEEDLELISAVQKCGEGN--WANILRGDFKWDRTASQLSQRWNIL 150 (502)
Q Consensus 98 ~~rkkkg~WT~EEDe~Ll~lV~k~G~~n--W~~IAk~~F~pgRT~kQCR~RW~nl 150 (502)
..++.+-.||+|+.++..++|+++|..+ |+.|.+.+..+|.|..+++.+.+.|
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999333 7899887556799999999988874
No 88
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=94.88 E-value=0.0064 Score=51.55 Aligned_cols=43 Identities=7% Similarity=-0.138 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCCCCCCCCccccCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTAGTTSSATMNNPVP 212 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~LpGRTdn~sIKNRw~ 212 (502)
...||.||.++..+++.. ||.+ |..|+..||+||-.+ |-.+|+
T Consensus 43 ~~~WT~eE~~~F~~~~~~---~gK~--F~~Ia~~l~~Kt~~~-cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQ---HPKN--FGLIASFLERKTVAE-CVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHH---STTC--HHHHHHTCTTCCHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---cCCC--HHHHHHHcCCCCHHH-HHHHHh
Confidence 468999999999999999 9999 999999999999887 655543
No 89
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.30 E-value=0.01 Score=47.63 Aligned_cols=43 Identities=2% Similarity=-0.183 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhh-cCCCCCCCCccccCCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTN-TTAGTTSSATMNNPVP 212 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~-~LpGRTdn~sIKNRw~ 212 (502)
...||+||-++..+++.+ ||.. |..|+. .|++||-.+ |..+|+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~---yGKd--f~~I~~~~v~~Kt~~~-~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEK---YGKD--FNDIRQDFLPWKSLTS-IIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHH---TCSC--HHHHHHTTCSSSCHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---hCcc--HHHHHHHHcCCCCHHH-HHHHHH
Confidence 468999999999999999 9999 999999 599999988 877766
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.30 E-value=0.028 Score=52.57 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccc
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRG 132 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~ 132 (502)
...||.+||..|+.+|.+||.|+|..|-..
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 456999999999999999999999999664
No 91
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.74 E-value=0.028 Score=55.98 Aligned_cols=29 Identities=41% Similarity=0.728 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc
Q 010767 104 KPWTAEEDLELISAVQKCGEGNWANILRG 132 (502)
Q Consensus 104 g~WT~EEDe~Ll~lV~k~G~~nW~~IAk~ 132 (502)
..|+.+||..|+.+|.+||.|+|..|-..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 36999999999999999999999999755
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.65 E-value=0.023 Score=57.52 Aligned_cols=51 Identities=31% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccccccc----------cccccCchhhhhHHHHhhhc
Q 010767 102 KRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNILRK 152 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~---~nW~~IAk~----------~F~pgRT~kQCR~RW~nl~~ 152 (502)
+...||.|||..|+-++.+||. ++|..|-.. .|+..||+.++..|-..|..
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 5568999999999999999999 999999522 35779999999999987543
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.06 E-value=0.011 Score=50.59 Aligned_cols=48 Identities=0% Similarity=-0.121 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHhhcCC-----CCCCCCccccCCCCCcCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKNITASCTNTTA-----GTTSSATMNNPVPSTANA 217 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk~Ws~IA~~Lp-----GRTdn~sIKNRw~s~lr~ 217 (502)
...||.||-..|+++++. |.-+ |..|+.+.. +||-.+ +|.||+.+.++
T Consensus 30 ~~~WT~eETd~LfdLc~~---fdlR--w~vI~DRy~~~~~~~RtvEd-LK~RYY~V~~~ 82 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRR---FDLR--FVVIHDRYDHQQFKKRSVED-LKERYYHICAK 82 (93)
T ss_dssp BTTBCHHHHHHHHHHHHH---TTTC--HHHHHHHCCTTTSCCCCHHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---cCCC--eEEEeeccccCCCCCCCHHH-HHHHHHHHHHH
Confidence 367999999999999999 9999 999999984 688888 99999877654
No 94
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=90.36 E-value=0.15 Score=53.02 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCccccccc----------cccccCchhhhhHHHHh
Q 010767 102 KRKPWTAEEDLELISAVQKCGE---GNWANILRG----------DFKWDRTASQLSQRWNI 149 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~---~nW~~IAk~----------~F~pgRT~kQCR~RW~n 149 (502)
++..||.+||..|+-++.+||. ++|..|-.. .|+..||+..+..|-..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 4568999999999999999999 999999332 23567777777777765
No 95
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.91 E-value=1.8 Score=45.08 Aligned_cols=107 Identities=10% Similarity=0.057 Sum_probs=72.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccccc-cCchhhhhHHHHh--------------------------------
Q 010767 103 RKPWTAEEDLELISAVQKCGEGNWANILRGDFKW-DRTASQLSQRWNI-------------------------------- 149 (502)
Q Consensus 103 kg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~p-gRT~kQCR~RW~n-------------------------------- 149 (502)
.+.||.-|=..++.++.+||..+-..||.. +. +.|...++ ||..
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~e--v~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~ 199 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARE--LAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQ 199 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSS--CCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHH--HccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999998889999987 44 66666655 2210
Q ss_pred --------hhccCC----CcccCCC--CCCCCCHHHHHHHHHHHHhhcCCCCC--CchHHHhhc------------CCCC
Q 010767 150 --------LRKKHG----NVILGSN--SSGSQLSEAQLAARHAMSLALDMPVK--NITASCTNT------------TAGT 201 (502)
Q Consensus 150 --------l~~L~P----~Ik~~~~--~kgpWT~EED~~Lleav~~al~~G~k--k~Ws~IA~~------------LpGR 201 (502)
-.+.+| .|..+.+ +...||.+||..|+-++.+ ||-. .+|-.|-.. +..|
T Consensus 200 ~~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k---~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSR 276 (374)
T 2y9y_A 200 QEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFK---YGLDRDDVYELVRDEIRDCPLFELDFYFRSR 276 (374)
T ss_dssp HHHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHH---HTTCSSCCHHHHHHHHHHCSGGGSCHHHHTC
T ss_pred HHHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHH---hccCCCChHHHHHHHHHhCcchhhhHHHhcC
Confidence 012222 1222222 4568999999988887777 5541 259998544 4678
Q ss_pred CCCCccccCCCCCcC
Q 010767 202 TSSATMNNPVPSTAN 216 (502)
Q Consensus 202 Tdn~sIKNRw~s~lr 216 (502)
|... |..|.+.+++
T Consensus 277 T~~E-L~rRc~tLi~ 290 (374)
T 2y9y_A 277 TPVE-LARRGNTLLQ 290 (374)
T ss_dssp CHHH-HHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHH
Confidence 8888 8777775554
No 96
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=68.64 E-value=0.16 Score=41.45 Aligned_cols=53 Identities=2% Similarity=-0.095 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhhc-----CCCCCCchHHHhhcCC----CCCCCCccccCCCCCcCC
Q 010767 164 SGSQLSEAQLAARHAMSLAL-----DMPVKNITASCTNTTA----GTTSSATMNNPVPSTANA 217 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al-----~~G~kk~Ws~IA~~Lp----GRTdn~sIKNRw~s~lr~ 217 (502)
...||.+|-.+|++++..-. ...++..|..||..|. .||..+ |+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~q-C~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDM-CTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHH
Confidence 46899999999999987511 1111225999999983 699988 99999866543
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=45.05 E-value=6 Score=31.49 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCC-chHHHhhcC--CCCCCCCccccCC
Q 010767 164 SGSQLSEAQLAARHAMSLALDMPVKN-ITASCTNTT--AGTTSSATMNNPV 211 (502)
Q Consensus 164 kgpWT~EED~~Lleav~~al~~G~kk-~Ws~IA~~L--pGRTdn~sIKNRw 211 (502)
+-.||+|..+..++++.. +|..+ .|..|-+.| +|.|-.+ |+.|.
T Consensus 7 r~~WT~elH~~Fv~Av~~---LG~~~AtPk~Il~~M~v~gLT~~~-VkSHL 53 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDH---LGVERAVPKKILDLMNVDKLTREN-VASHL 53 (64)
T ss_dssp SCSSCHHHHHHHHHHHHH---HCTTTCCHHHHHHHHCCTTCCHHH-HHHHH
T ss_pred CCcCCHHHHHHHHHHHHH---hCCCCCCcHHHHHHcCCCCCCHHH-HHHHH
Confidence 568999999999999999 77443 378888876 6777766 66554
No 98
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=29.87 E-value=39 Score=31.56 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=19.0
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 010767 99 PRKKRKPWTAEEDLELI--------SAVQKCG 122 (502)
Q Consensus 99 ~rkkkg~WT~EEDe~Ll--------~lV~k~G 122 (502)
|.-.+|-||+|+|+.|. ++++|||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 55679999999999875 5666776
No 99
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.59 E-value=2.2e+02 Score=22.84 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCchhhhhHHHHhh-hccCCCcc
Q 010767 102 KRKPWTAEEDLELISAVQKCGEGNWANILRGDFKWDRTASQLSQRWNIL-RKKHGNVI 158 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~~nW~~IAk~~F~pgRT~kQCR~RW~nl-~~L~P~Ik 158 (502)
....|+.++-+.+... +...+|-.|... .++=+..+++.+|+.+ +..+|+.+
T Consensus 8 ~~~~~s~~~~~~~~~~---~~~~~~y~iLgv--~~~as~~eIk~aYr~la~~~HPDk~ 60 (90)
T 2ys8_A 8 SSASFTKEQADAIRRI---RNSKDSWDMLGV--KPGASRDEVNKAYRKLAVLLHPDKC 60 (90)
T ss_dssp CCCCCCHHHHHHHHHH---HTCSSHHHHHTC--CTTCCHHHHHHHHHHHHHHHCTTTC
T ss_pred cccCCCHHHHHHHHHH---hcCCCHHHHcCc--CCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 4667999888877654 344667666654 4677889999999966 56689987
No 100
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=29.24 E-value=52 Score=32.57 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCchhhhhHHH
Q 010767 102 KRKPWTAEEDLELISAVQKCGE--GNWANILRGDFKWDRTASQLSQRW 147 (502)
Q Consensus 102 kkg~WT~EEDe~Ll~lV~k~G~--~nW~~IAk~~F~pgRT~kQCR~RW 147 (502)
.++.||..|=..|++.+.+||. .+|..|+...-+..++....+.=|
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 3688999999999999999994 679999776334566665544333
No 101
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.65 E-value=37 Score=30.38 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=27.3
Q ss_pred ccccccccccCchhhhhHHHHhhhccCCCcccCCCCCCCCCHHHHHHHHHH
Q 010767 128 NILRGDFKWDRTASQLSQRWNILRKKHGNVILGSNSSGSQLSEAQLAARHA 178 (502)
Q Consensus 128 ~IAk~~F~pgRT~kQCR~RW~nl~~L~P~Ik~~~~~kgpWT~EED~~Llea 178 (502)
.||.. +.|+|+.+||..|.. ...||+||++.+++-
T Consensus 120 ~vA~~--ikgkt~eeir~~f~I--------------~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 120 TVADM--IKGKTPEEIRTTFNI--------------KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHT--TTTCCHHHHHHHTTC--------------CCCCCHHHHHHHHHH
T ss_pred HHHHH--HcCCCHHHHHHHcCC--------------CCCCCHHHHHHHHHh
Confidence 45655 679999999998866 467999999887543
Done!