BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010769
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 280 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 329
+I+A+ + V ++D +G+CN L L H + ++WN + LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 330 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382
D +V + K+ +I +A VE +AW E F +D + +D
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Query: 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442
R+ +T+ + S + AH V +S+NP +LATGS DK V LWDL N +
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
+ K +F V +S + +LA G+ +L +WD
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 32/222 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 317
H GL+WN L SAS D V +WD+ AG H+ V+ VAW
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 237
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 374
+ + S + D+ + + D R +T S V A+V L+++P++E D
Sbjct: 238 HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
T+ +D+R K T +H + + ++P +LA+ TD+ + +WDL
Sbjct: 298 KTVALWDLRNLK--------LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 474
S K G S +ED P + GG K+
Sbjct: 350 S------------KIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 13/184 (7%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHS 321
H+ V +AW+ ++ S + D+++ IWD + K + ++ HT +V +++N +S
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 322 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
IL +GS D++V + D R + H+ F+ + ++ + W PH E S D +
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHT-FE-SHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 379 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+D+ + D + + F H + S+NP P ++ + S D + ++W
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Query: 434 LSNN 437
+ N
Sbjct: 406 XAEN 409
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 280 NILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS 329
+I+A+ + V ++D +G+CN L L H + ++WN + LLS S
Sbjct: 140 HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSAS 199
Query: 330 FDRSVVM-------KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382
D +V + K+ +I +A VE +AW E F +D + +D
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Query: 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442
R+ +T+ + S + AH V +S+NP +LATGS DK V LWDL N +
Sbjct: 260 RS------NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484
+ K +F V +S + +LA G+ +L +WD LS G
Sbjct: 314 TFESHK-DEIFQVHWSPHNETILASSGTDRRLNVWD-LSKIG 353
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 317
H GL+WN L SAS D V +WD+ AG H+ V+ VAW
Sbjct: 178 HQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 237
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 374
+ + S + D+ +++ D R +T S V A+V L+++P++E D
Sbjct: 238 HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSAD 297
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
T+ +D+R K T +H + + ++P +LA+ TD+ + +WDL
Sbjct: 298 KTVALWDLRNLK--------LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 474
S K G S +ED P + GG K+
Sbjct: 350 S------------KIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHS 321
H+ V +AW+ ++ S + D+++ IWD + K + ++ HT +V +++N +S
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 322 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
IL +GS D++V + D R + H+ F+ + ++ + W PH E S D +
Sbjct: 288 EFILATGSADKTVALWDLRNLKLKLHT-FE-SHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 379 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
Query: 434 LSNN 437
++ N
Sbjct: 406 MAEN 409
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
+G+C +L L H + ++WN + LLS S D ++ + K+ R+
Sbjct: 172 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 231
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
A VE +AW E F +D + +D R ++ + + S T+ AH V
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 285
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
+S+NP +LATGS DK V LWDL N + + S +F V +S + +LA
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 344
Query: 469 GSKGKLEIWD 478
G+ +L +WD
Sbjct: 345 GTDRRLHVWD 354
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEHHTDKVQAVAWNHHS 321
HT V +AW+ ++ S + D+++ IWD K + T++ HT +V +++N +S
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 322 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLH 351
Query: 379 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 352 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
Query: 434 LSNN 437
++ N
Sbjct: 412 MAEN 415
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 317
H GL+WN L SAS D + +WD+ A HT V+ VAW
Sbjct: 184 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 243
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 374
+ + S + D+ +++ D R + S V A+V L+++P++E D
Sbjct: 244 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
T+ +D+R K S +H + + ++P +LA+ TD+ + +WDL
Sbjct: 304 KTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 474
S K G S +ED P + GG K+
Sbjct: 356 S------------KIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
+G+C +L L H + ++WN + LLS S D ++ + K+ R+
Sbjct: 170 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 229
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
A VE +AW E F +D + +D R ++ + + S T+ AH V
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 283
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
+S+NP +LATGS DK V LWDL N + + S +F V +S + +LA
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 342
Query: 469 GSKGKLEIWD 478
G+ +L +WD
Sbjct: 343 GTDRRLHVWD 352
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEHHTDKVQAVAWNHHS 321
HT V +AW+ ++ S + D+++ IWD K + T++ HT +V +++N +S
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 322 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLH 349
Query: 379 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 350 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
Query: 434 LSNN 437
++ N
Sbjct: 410 MAEN 413
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 317
H GL+WN L SAS D + +WD+ A HT V+ VAW
Sbjct: 182 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 241
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 374
+ + S + D+ +++ D R + S V A+V L+++P++E D
Sbjct: 242 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
T+ +D+R K S +H + + ++P +LA+ TD+ + +WDL
Sbjct: 302 KTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 474
S K G S +ED P + GG K+
Sbjct: 354 S------------KIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 298 AGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-------KDARISTHSGFK 348
+G+C +L L H + ++WN + LLS S D ++ + K+ R+
Sbjct: 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227
Query: 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408
A VE +AW E F +D + +D R ++ + + S T+ AH V
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR------NNNTSKPSHTVDAHTAEVN 281
Query: 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
+S+NP +LATGS DK V LWDL N + + S +F V +S + +LA
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 340
Query: 469 GSKGKLEIWDTLSDAG 484
G+ +L +WD LS G
Sbjct: 341 GTDRRLHVWD-LSKIG 355
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVA---AGKCNLTLEHHTDKVQAVAWNHHS 321
HT V +AW+ ++ S + D+++ IWD K + T++ HT +V +++N +S
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 322 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLH 347
Query: 379 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
Query: 434 LSNN 437
++ N
Sbjct: 408 MAEN 411
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAW 317
H GL+WN L SAS D + +WD+ A HT V+ VAW
Sbjct: 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW 239
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 374
+ + S + D+ +++ D R + S V A+V L+++P++E D
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
T+ +D+R K S +H + + ++P +LA+ TD+ + +WDL
Sbjct: 300 KTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKL 474
S K G S +ED P + GG K+
Sbjct: 352 S------------KIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 281 ILASASADKQVKIWDVA--------AGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGS- 329
I+A+ + V ++D +G+CN L L H + ++WN + LLS S
Sbjct: 139 IIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD 198
Query: 330 ------FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
+D S V K+ ++ A VE ++W E F +D + +D R
Sbjct: 199 DHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR 258
Query: 384 TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
+ + + + S ++ AH V +S+NP +LATGS DK V LWDL N + +
Sbjct: 259 S------NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-LH 311
Query: 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
S +F V +S + +LA G+ +L +WD
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA----GK---CNLTLEHHTDKVQAVAW 317
H GL+WN L SAS D + +WD++A GK HT V+ V+W
Sbjct: 176 HQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW 235
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFVVSLED 374
+ + S + D+ +++ D R + S +V A+V L+++P++E D
Sbjct: 236 HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
T+ +D+R K + +H + + ++P +LA+ TD+ + +WDL
Sbjct: 296 KTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 435 S 435
S
Sbjct: 348 S 348
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 13/184 (7%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHS 321
HT V ++W+ ++ S + D+++ IWD + K + +++ HT +V +++N +S
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 322 PQILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
IL +GS D++V + D R + HS F+ + ++ + W PH E S D +
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHS-FE-SHKDEIFQVQWSPHNETILASSGTDRRLN 343
Query: 379 GFDI-----RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+D+ + D + + F H + S+NP P ++ + S D ++++W
Sbjct: 344 VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Query: 434 LSNN 437
++ N
Sbjct: 404 MAEN 407
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HT SVL L +++ ++ + S+D V++WDV G+ TL HH + V + +N+ +
Sbjct: 172 HTGSVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GM 225
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
+++ S DRS+ + D T + + ++ + V + D TIK ++ T
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
+ TL+ H + + + Y L+ +GS+D ++LWD+ +C+
Sbjct: 286 C---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG--ACLRV 331
Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
V + F D+ +++ G GK+++WD ++
Sbjct: 332 LEGHEELVRCIRF--DNKRIVS-GAYDGKIKVWDLVA 365
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 63 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 120
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 121 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 175
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 176 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 228
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 105 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 162
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 163 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 217
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 218 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 93
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 94 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 144
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 145 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 200
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 201 PNGKYILA-ATLDNTLKLWD 219
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 16 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 72
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 73 SSDSNLLVSASDDK-TLKIWDVSS 95
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 70 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 112 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 169
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 170 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 224
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 225 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 100
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 151
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 152 PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 207
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 208 PNGKYILA-ATLDNTLKLWD 226
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
+K P + FTL H KAV ++ ++P LA+ S DK++K+W + + S
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS 68
Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
+ K G + VA+S DS +++ K L+IWD S
Sbjct: 69 GH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 102
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 109 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 166
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 167 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 221
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 222 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 97
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 148
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 149 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 204
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 205 PNGKYILA-ATLDNTLKLWD 223
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 81 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 138
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 139 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 193
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 194 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 246
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 276
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 123 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 180
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 181 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 235
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 236 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 111
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 112 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 162
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 163 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 218
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 219 PNGKYILA-ATLDNTLKLWD 237
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439
F +K P + FTL H KAV ++ ++P LA+ S DK++K+W + +
Sbjct: 16 FQGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKF 74
Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
S + K G + VA+S DS +++ K L+IWD S
Sbjct: 75 EKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 113
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 109 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 166
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 167 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 221
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 222 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 97
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 148
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 149 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 204
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 205 PNGKYILA-ATLDNTLKLWD 223
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 60 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 117
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 118 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 172
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 173 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 225
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 102 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 159
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 160 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 214
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 215 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 90
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 91 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 141
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 142 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 197
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 198 PNGKYILA-ATLDNTLKLWD 216
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 13 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 69
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 70 SSDSNLLVSASDDK-TLKIWDVSS 92
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 70 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 112 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 169
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 170 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 224
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 225 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 100
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 151
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 152 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 207
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 208 PNGKYILA-ATLDNTLKLWD 226
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
G +K P + FTL H KAV ++ ++P LA+ S DK++K+W + +
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK 62
Query: 439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
S + K G + VA+S DS +++ K L+IWD S
Sbjct: 63 FEKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 102
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 69 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 126
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 127 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 181
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 182 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 234
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 111 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 168
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 169 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 223
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 224 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 99
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 100 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 150
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 151 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 206
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 207 PNGKYILA-ATLDNTLKLWD 225
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 22 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 78
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 79 SSDSNLLVSASDDK-TLKIWDVSS 101
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 64 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 106 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 163
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 164 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 218
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 219 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 94
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 145
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 146 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 201
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 202 PNGKYILA-ATLDNTLKLWD 220
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
+K P + FTL H KAV ++ ++P LA+ S DK++K+W + + S
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
+ K G + VA+S DS +++ K L+IWD S
Sbjct: 63 GH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 96
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 70 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 127
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 128 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 183 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 235
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 112 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 169
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 170 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 224
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 225 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 100
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 151
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 152 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 207
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 208 PNGKYILA-ATLDNTLKLWD 226
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 79
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 80 SSDSNLLVSASDDK-TLKIWDVSS 102
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 65 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 122
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 123 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 177
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 178 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 230
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 260
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 107 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 164
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 165 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 219
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 220 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 95
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 96 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 146
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 147 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 202
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 203 PNGKYILA-ATLDNTLKLWD 221
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 18 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 74
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 75 SSDSNLLVSASDDK-TLKIWDVSS 97
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 109 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 166
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 167 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 221
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 222 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LA++SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 97
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 98 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 148
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 149 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 204
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 205 PNGKYILA-ATLDNTLKLWD 223
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 64 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 121
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 122 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 177 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 229
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 106 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 163
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 164 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 218
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 219 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 94
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 145
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 146 PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 201
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 202 PNGKYILA-ATLDNTLKLWD 220
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
+K P + FTL H KAV ++ ++P LA+ S DK++K+W + + S
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS 62
Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
+ K G + VA+S DS +++ K L+IWD S
Sbjct: 63 GH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 96
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 86 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 143
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 144 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 198
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 199 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 251
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 128 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 185
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 186 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 240
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 241 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 116
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 117 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 167
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 168 PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 223
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 224 PNGKYILA-ATLDNTLKLWD 242
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 385 AKSDPDSTSQQSS-----------FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
A+ P S++ QS FTL H KAV ++ ++P LA+ S DK++K+W
Sbjct: 15 AQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWG 73
Query: 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
+ + S + K G + VA+S DS +++ K L+IWD S
Sbjct: 74 AYDGKFEKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 118
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 88 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 145
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 146 IVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 200
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 201 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 253
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H++ V +N + N++ S S D+ V+IWDV GKC TL H+D V AV +N +
Sbjct: 130 HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SL 187
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAAD-----VESLAWDPHAEHSFVVSLEDGTIKG 379
++S S+D + D T SG D V + + P+ ++ +L D T+K
Sbjct: 188 IVSSSYDGLCRIWD----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKL 242
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
+D K ++T H ++K +++ + +GS D +V +W+L +
Sbjct: 243 WDYSKGKC-------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S D+++ + D +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWD--V 118
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTL 400
S+ K + + + + +VS D +++ +D++T K TL
Sbjct: 119 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---------TL 169
Query: 401 HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFS 458
AH V + +N +L+ + S D + ++WD ++ Q + I NP V V FS
Sbjct: 170 PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFS 225
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
+ ++LA L++WD
Sbjct: 226 PNGKYILA-ATLDNTLKLWD 244
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 385 AKSDPDSTSQQSS-----------FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
A+ P S++ QS FTL H KAV ++ ++P LA+ S DK++K+W
Sbjct: 17 AQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWG 75
Query: 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
+ + S + K G + VA+S DS +++ K L+IWD S
Sbjct: 76 AYDGKFEKTISGH-KLG-ISDVAWSSDSNLLVSASDDK-TLKIWDVSS 120
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 79/200 (39%), Gaps = 57/200 (28%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSAS------------ 87
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
+D T+K +D+ + K TL
Sbjct: 88 -------------------------------DDKTLKIWDVSSGKCLK---------TLK 107
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 461
H V ++NP NL+ +GS D+ V++WD+ C+ + + V +V F+ D
Sbjct: 108 GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGM--CLKTLPAHSDPVSAVHFNRDG 164
Query: 462 PFVLAIGGSKGKLEIWDTLS 481
+++ G IWDT S
Sbjct: 165 SLIVS-SSYDGLCRIWDTAS 183
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + +AW+ + N+L SAS DK +KIWDV++GKC TL+ H++ V +N S +
Sbjct: 67 HKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NL 124
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIR 383
++SGSFD SV + D + T K A A + + S +VS DG + +
Sbjct: 125 IVSGSFDESVRIWDVK--TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 384 TAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNLLATGSTDKMVKLWDLS------- 435
D+ S Q TL D V + ++P +LA + D +KLWD S
Sbjct: 180 ------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKT 232
Query: 436 ----NNQPSCIASRNPKAGAVFSVAFSEDS 461
N+ CI + G + V+ SED+
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 79/200 (39%), Gaps = 57/200 (28%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341
LAS+SADK +KIW GK T+ H + VAW+ S +L+S S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSAS------------ 87
Query: 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
+D T+K +D+ + K TL
Sbjct: 88 -------------------------------DDKTLKIWDVSSGKCLK---------TLK 107
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 461
H V ++NP NL+ +GS D+ V++WD+ C+ + + V +V F+ D
Sbjct: 108 GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGM--CLKTLPAHSDPVSAVHFNRDG 164
Query: 462 PFVLAIGGSKGKLEIWDTLS 481
+++ G IWDT S
Sbjct: 165 SLIVS-SSYDGLCRIWDTAS 183
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457
FTL H KAV ++ ++P LA+ S DK++K+W + + S + K G + VA+
Sbjct: 20 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLG-ISDVAW 76
Query: 458 SEDSPFVLAIGGSKGKLEIWDTLS 481
S DS +++ K L+IWD S
Sbjct: 77 SSDSNLLVSASDDK-TLKIWDVSS 99
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 57/256 (22%)
Query: 271 GLAWNKEFR-NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 329
G W+ + R NI+ S S D+ +K+W+ G+C TL HT V+ + H + ++SGS
Sbjct: 160 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM---HLHEKRVVSGS 216
Query: 330 FDRSVVMKD----------------ARISTHSGFKWAVAA-DVESLAWDPHAE---HSF- 368
D ++ + D R + G + A D WDP E H+
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 369 -----VVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
V SL+ D +I+ +D+ T T QS S
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS------------LTSG 324
Query: 413 NPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
L N+L +G+ D VK+WD+ Q + N AV + F+++ FV+
Sbjct: 325 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVIT-SSDD 381
Query: 472 GKLEIWDTLSDAGISN 487
G +++WD + I N
Sbjct: 382 GTVKLWDLKTGEFIRN 397
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 25/200 (12%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
N + S S D +K+W GKC TL HT V + + I++SGS DR++ + +A
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKVWNA 186
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSF 398
+ + V + H VVS D T++ +DI T Q
Sbjct: 187 ETGECIHTLYGHTSTVRCM----HLHEKRVVSGSRDATLRVWDIETG---------QCLH 233
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458
L H AV + Y+ + +G+ D MVK+WD +C+ + V+S+ F
Sbjct: 234 VLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWD--PETETCLHTLQGHTNRVYSLQF- 287
Query: 459 EDSPFVLAIGGSKGKLEIWD 478
D V++ G + +WD
Sbjct: 288 -DGIHVVS-GSLDTSIRVWD 305
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 61/250 (24%)
Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 268
GN +A S + ++ +W++D DE + +L HT
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNS------------------------HTQD 152
Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHSPQILL 326
V + W+ + +LASAS D VK++ C TLE H V ++A++ S Q L
Sbjct: 153 VKHVVWHPS-QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLA 210
Query: 327 SGSFDRSVVMKDAR-------------------ISTHSGFKWAVAADVESLAWDPHAEHS 367
S S DR+V + I T SGF + + +AW +
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH---SRTIYDIAW-CQLTGA 266
Query: 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLAT 422
+ D I+ F + DP+S QQ +F+L AH + V +++NP P LLA+
Sbjct: 267 LATACGDDAIRVF-----QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 423 GSTDKMVKLW 432
S D V W
Sbjct: 322 CSDDGEVAFW 331
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSP 322
H +V +AW+ N LASAS D IW +C TLE H ++V++VAW S
Sbjct: 60 HQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSG 117
Query: 323 QILLSGSFDRSVVMKD----------ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372
+L + S D+SV + + + +++H+ DV+ + W P E S
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT-------QDVKHVVWHPSQELLASASY 170
Query: 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432
+D T+K + R + D TL H+ V +++++P LA+ S D+ V++W
Sbjct: 171 DD-TVKLY--REEEDD-----WVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIW 221
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 28/205 (13%)
Query: 265 HTDS-VLGLAWNKEFRNILASASADKQVKIWDVAAGK--CNLTL-EHHTDKVQAVAWNHH 320
H DS LAWN +LAS D++++IW C L E H V+ VAW
Sbjct: 14 HPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW--- 69
Query: 321 SP--QILLSGSFDRSVVMKDAR------ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372
SP L S SFD + + ++T G + +V+S+AW P +
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE----NEVKSVAWAPSG-NLLATCS 124
Query: 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432
D ++ +++ + + L++H + V + ++P LLA+ S D VKL+
Sbjct: 125 RDKSVWVWEV------DEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLY 177
Query: 433 DLSNNQPSCIASRNPKAGAVFSVAF 457
+ C A+ V+S+AF
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAF 202
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 60/290 (20%)
Query: 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEXXXXXXXXXXXXXXXXXXXXHTDS 268
G F+A G+ + I IWD I+ + +IL G H
Sbjct: 135 GKFLATGAEDRLIRIWD---IENRKIVMILQG------------------------HEQD 167
Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
+ L + + L S S D+ V+IWD+ G+C+LTL D V VA + + + +G
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAG 225
Query: 329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF-VVSLEDG----------TI 377
S DR+V + D+ +GF D E+ + H + + VV DG ++
Sbjct: 226 SLDRAVRVWDS----ETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 378 KGFDIRTAKSDPDSTSQQSS---FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
K ++++ A + DS + S T H V +++ +L+ GS D+ V WD
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS-GSKDRGVLFWDK 339
Query: 435 SNNQPSCI--ASRNPKAGAVFSVAFSEDSPF-----VLAIGGSKGKLEIW 477
+ P + RN +V SVA + S V A G K IW
Sbjct: 340 KSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 369 VVSLEDGTI--KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 426
V + DG++ + D A DP++ + SS + + ++VC ++P LATG+ D
Sbjct: 89 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC---FSP-DGKFLATGAED 144
Query: 427 KMVKLWDLSNNQ 438
+++++WD+ N +
Sbjct: 145 RLIRIWDIENRK 156
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
+AW KE N LA ++ +V++WDV K + H+ +V +++WN + IL SGS
Sbjct: 73 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 128
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
+ D R++ H SG + +V L W P H L G +
Sbjct: 129 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 178
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
S P T H AV +++ P N+LAT G++D+ +++W++ + +C+++
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 236
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
+ + V S+ +S + G ++ +L IW
Sbjct: 237 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 269
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 103/255 (40%), Gaps = 65/255 (25%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
+++ SAS D +K+WD G TL+ HTD VQ ++++H S ++L S S D ++ + D
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDF 179
Query: 340 R----ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA---------- 385
+ I T G +V S++ P+ +H V + D TIK ++++T
Sbjct: 180 QGFECIRTMHGHD----HNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 386 ------KSDPDST-----------------SQQSSFTLHAHDKAVCTISYNPLVPN---- 418
+ + D T +++ L H V IS+ P
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Query: 419 ---------------LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 463
L +GS DK +K+WD+S C+ + V V F F
Sbjct: 295 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGKF 352
Query: 464 VLAIGGSKGKLEIWD 478
+L+ K L +WD
Sbjct: 353 ILSCADDK-TLRVWD 366
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ---------------- 323
++AS S D+ V++W VA +C L H V+ ++W S
Sbjct: 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306
Query: 324 ---ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKG 379
LLSGS D+++ M D +ST V D H+ F++S +D T++
Sbjct: 307 PGPFLLSGSRDKTIKMWD--VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+D + +++ TL+AH+ V ++ ++ P + TGS D+ VK+W+
Sbjct: 365 WDYK---------NKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE 408
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
+AW KE N LA ++ +V++WDV K + H+ +V +++WN + IL SGS
Sbjct: 164 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 219
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
+ D R++ H SG + +V L W P H L G +
Sbjct: 220 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 269
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
S P T H AV +++ P N+LAT G++D+ +++W++ + +C+++
Sbjct: 270 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 327
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
+ + V S+ +S + G ++ +L IW
Sbjct: 328 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 360
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 25/214 (11%)
Query: 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331
+AW KE N LA ++ +V++WDV K + H+ +V +++WN + IL SGS
Sbjct: 153 VAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRS 208
Query: 332 RSVVMKDARISTH-----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386
+ D R++ H SG + +V L W P H L G +
Sbjct: 209 GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRH-----LASGGNDNL-VNVWP 258
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT--GSTDKMVKLWDLSNNQPSCIAS 444
S P T H AV +++ P N+LAT G++D+ +++W++ + +C+++
Sbjct: 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLSA 316
Query: 445 RNPKAGAVFSVAFSED-SPFVLAIGGSKGKLEIW 477
+ + V S+ +S + G ++ +L IW
Sbjct: 317 VDAHS-QVCSILWSPHYKELISGHGFAQNQLVIW 349
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 274 WNKEF-RNILASASADKQVKIWDVAAGKCNLTL------EHHTDKVQAVAWNHHSPQILL 326
W+ +F + ILA+ S D+++K+ V+ + TL H +++VAW H+ +L
Sbjct: 18 WSFDFSQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLA 74
Query: 327 SGSFDRSVVMKDARISTHSGFKWAVAA-------DVESLAWDPHAEHSFVVSLEDGTIKG 379
+GSFD +V + S F+ + A +V+ +AW + S +
Sbjct: 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS---- 130
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439
+ ++D + L H + V + ++P LLA+ S D V++W ++
Sbjct: 131 --VWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW 187
Query: 440 SCIASRNPKAGAVFSVAFSE-DSPFVLAIGGSKGKLEIWDTLSD 482
C+A N G V+S F + + F L G + +W + D
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 317
HT VL +AW N++AS S D V +W++ G L TLE HT +V VAW
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 370
+ + +LLS D +++ D A V +L D H + + V
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 371 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422
S D ++ + R A+ D + + + + T ++ +
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 423 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
+++ V LWD + +P + + +G + F D+ V G + ++ S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 482 DAGISNRFSKYS 493
+A + S +S
Sbjct: 300 EAPFLHYLSMFS 311
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS 387
G+F + K R+ + A V +AW PH ++ ED T+ ++I
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI----- 111
Query: 388 DPDS----TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
PD ++ TL H K V ++++P N+L + D ++ +WD+
Sbjct: 112 -PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Query: 444 SRNPKAGAVFSVAFSEDSPFV 464
+ ++SV +S D +
Sbjct: 171 GPDVHPDTIYSVDWSRDGALI 191
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 43/252 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-------TLEHHTDKVQAVAW 317
HT VL +AW N++AS S D V +W++ G L TLE HT +V VAW
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 318 NHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV------- 370
+ + +LLS D +++ D A V +L D H + + V
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDV----------GTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 371 ----SLEDGTIKGFDIR----TAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422
S D ++ + R A+ D + + + + T ++ +
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM------- 242
Query: 423 GSTDKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
+++ V LWD + +P + + +G + F D+ V G + ++ S
Sbjct: 243 --SERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FDPDTNIVYLCGKGDSSIRYFEITS 299
Query: 482 DAGISNRFSKYS 493
+A + S +S
Sbjct: 300 EAPFLHYLSMFS 311
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 48/254 (18%)
Query: 196 MAWLDCPLKDREKGNFMAVGSMEPAIEIWDLD----VIDEVQPHVILGGIDEEXXXXXXX 251
+AW CP D N +A GS + + +W++ V+ +P + L G
Sbjct: 87 IAW--CPHND----NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG----------- 129
Query: 252 XXXXXXXXXXXXXHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHT 309
HT V +AW+ +N+L SA D + +WDV G LTL + H
Sbjct: 130 -------------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 369
D + +V W+ I S +D R+ K V A+ + H+
Sbjct: 177 DTIYSVDWSRDGALICTS--------CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228
Query: 370 VSLEDGTIKGFDIRTAKSDP--DSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGST 425
VS GF + + D+ + +L D + V ++P + G
Sbjct: 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG 288
Query: 426 DKMVKLWDLSNNQP 439
D ++ +++++ P
Sbjct: 289 DSSIRYFEITSEAP 302
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS 387
G+F + K R+ + A V +AW PH ++ ED T+ ++I
Sbjct: 57 GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI----- 111
Query: 388 DPDS----TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
PD ++ TL H K V ++++P N+L + D ++ +WD+
Sbjct: 112 -PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Query: 444 SRNPKAGAVFSVAFSEDSPFV 464
+ ++SV +S D +
Sbjct: 171 GPDVHPDTIYSVDWSRDGALI 191
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 37/243 (15%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H+ SV G+A++ + + I ASAS DK VK+W+ G+ TL H+ V VA+ Q
Sbjct: 220 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQT 276
Query: 325 LLSGSFDRSVVMKDAR------ISTHSGFKWAVA--ADVESLA----------WDPHAEH 366
+ S S D++V + + ++ HS W VA D +++A W+ + +H
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Query: 367 SFVVSLEDGTIKGF----DIRTAKSDPD-------STSQQSSFTLHAHDKAVCTISYNPL 415
++ ++ G D +T S D + + Q TL H +V ++++P
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP- 395
Query: 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475
+A+ S DK VKLW N + + + +V+ VAFS D + + K ++
Sbjct: 396 DGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK-TVK 451
Query: 476 IWD 478
+W+
Sbjct: 452 LWN 454
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 30/219 (13%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-- 322
H+ SV G+A++ + + I ASAS DK VK+W+ G+ TL H+ V VA+ SP
Sbjct: 15 HSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAF---SPDG 69
Query: 323 QILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
Q + S S D++V + + + T +G ++ V +A+ P + + + +D T+K
Sbjct: 70 QTIASASDDKTVKLWNRNGQLLQTLTGH----SSSVRGVAFSPDGQ-TIASASDDKTVKL 124
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439
++ + Q TL H +V ++++P +A+ S DK VKLW N
Sbjct: 125 WN----------RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLW---NRNG 170
Query: 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
+ + + +V+ VAFS D + + K +++W+
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK-TVKLWN 208
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 91/174 (52%), Gaps = 26/174 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-- 322
H+ SV G+A++ + + I ASAS DK VK+W+ G+ TL H+ V+ VA+ SP
Sbjct: 425 HSSSVWGVAFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF---SPDG 479
Query: 323 QILLSGSFDRSVVMKDAR---ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
Q + S S D++V + + + T +G ++ V +A+ P + + + +D T+K
Sbjct: 480 QTIASASDDKTVKLWNRNGQLLQTLTGH----SSSVRGVAFSPDGQ-TIASASDDKTVKL 534
Query: 380 FDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
++ + Q TL H +V ++++P +A+ S+DK VKLW+
Sbjct: 535 WN----------RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 25/179 (13%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H+ V GLAW + LAS D V+IWD + T +H V+AVAW +
Sbjct: 216 HSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 325 LLS--GSFDRSV----VMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
L + G+ D+ + AR++T + V SL W PH++ E +
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSK-------EIMSTH 322
Query: 379 GF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWDL 434
GF D + S+ + AHD V Y+ L P+ +L+T ++D+ +K W +
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL---YSALSPDGRILSTAASDENLKFWRV 378
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQI---LLSGSFDRSVV 335
N++A A ++ V +W+ +G + E + V +V W+H + L +G D V
Sbjct: 105 NVVAVA-LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Query: 336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 395
++ T +G + A V L+W+ H S G I D+R A
Sbjct: 164 ESQTKLRTMAGHQ----ARVGCLSWNRHVLSS---GSRSGAIHHHDVRIA--------NH 208
Query: 396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455
TL H VC +++ L A+G D +V++WD ++ P ++ AV +V
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQL-ASGGNDNVVQIWDARSSIPKF--TKTNHNAAVKAV 265
Query: 456 AFSEDSPFVLAIGGSK--GKLEIWDTLSDAGIS 486
A+ +LA GG ++ W+ + A ++
Sbjct: 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 37/230 (16%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIW-----DVAAGKCNLTLEHHTDKVQAVAWNH 319
HTD V +A + +I+ SAS DK + +W D A G L H+ V+ V +
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
Q LSGS+D + + W +AA V + + H + V+ ++
Sbjct: 441 DG-QFALSGSWDGELRL------------WDLAAGVSTRRFVGHTKDVLSVAF---SLDN 484
Query: 380 FDIRTAKSDPD----STSQQSSFTL----HAHDKAVCTISYNP--LVPNLLATGSTDKMV 429
I +A D +T + +T+ H V + ++P L P ++ + S DK V
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV-SASWDKTV 543
Query: 430 KLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
K+W+LSN + S +A G V +VA S D A GG G + +WD
Sbjct: 544 KVWNLSNCKLRSTLAGHT---GYVSTVAVSPDGSLC-ASGGKDGVVLLWD 589
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV----VMKDA 339
S S D ++++WD+AAG HT V +VA++ + QI +S S DR++ + +
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGEC 505
Query: 340 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQ 394
+ + G + W V + + P+ +VS D T+K +++ K
Sbjct: 506 KYTISEGGEGHRDW-----VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS----- 555
Query: 395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 454
TL H V T++ +P +L A+G D +V LWDL+ + N + +
Sbjct: 556 ----TLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SVIHA 607
Query: 455 VAFSEDSPFVLAIGGSKGKLEIWD 478
+ FS + ++ A ++ ++IWD
Sbjct: 608 LCFSPNRYWLCA--ATEHGIKIWD 629
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H D VL A++ + + +A+ SADK+VKIWD A GK T + H+++V + + S +
Sbjct: 663 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 325 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
LL +GS D + + D + V + P E S DGT++ +D+R
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 780
Query: 384 TA 385
+A
Sbjct: 781 SA 782
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HTD+V ++++ + I AS ADK ++++ G+ L ++ H D+V A++
Sbjct: 621 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 674
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
D+ I+T S AD + WD
Sbjct: 675 ------------DDSYIATCS-------ADKKVKIWD----------------------- 692
Query: 385 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
S + + T H + V C N LLATGS D +KLWDL NQ C
Sbjct: 693 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 742
Query: 444 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 481
RN G SV SP +LA + G L +WD S
Sbjct: 743 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%)
Query: 374 DGTIKGFDIRTAKSDPDSTSQQ------------SSFTLHAHDKAVCTISYNPLVPN--- 418
DGT+K +++ T + + D T Q + F+ + DK S++ L P
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1130
Query: 419 -----------------LLATGSTDKMVKLWDLSNNQ--PSC--IASRNPKA---GAVFS 454
LLATG + +++W++S+ Q SC I+ A G V
Sbjct: 1131 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1190
Query: 455 VAFSEDSPFVLAIGG 469
V FS DS +++ GG
Sbjct: 1191 VCFSPDSKTLVSAGG 1205
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H D VL A++ + + +A+ SADK+VKIWD A GK T + H+++V + + S +
Sbjct: 656 HEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 325 LL-SGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383
LL +GS D + + D + V + P E S DGT++ +D+R
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADGTLRLWDVR 773
Query: 384 TA 385
+A
Sbjct: 774 SA 775
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 62/220 (28%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HTD+V ++++ + I AS ADK ++++ G+ L ++ H D+V A++
Sbjct: 614 HTDAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS----- 667
Query: 325 LLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384
D+ I+T S AD + WD
Sbjct: 668 ------------DDSYIATCS-------ADKKVKIWD----------------------- 685
Query: 385 AKSDPDSTSQQSSFTLHAHDKAV-CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443
S + + T H + V C N LLATGS D +KLWDL NQ C
Sbjct: 686 ------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL--NQKEC-- 735
Query: 444 SRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLS 481
RN G SV SP +LA + G L +WD S
Sbjct: 736 -RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%)
Query: 374 DGTIKGFDIRTAKSDPDSTSQQ------------SSFTLHAHDKAVCTISYNPLVPN--- 418
DGT+K +++ T + + D T Q + F+ + DK S++ L P
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL 1123
Query: 419 -----------------LLATGSTDKMVKLWDLSNNQ--PSC--IASRNPKA---GAVFS 454
LLATG + +++W++S+ Q SC I+ A G V
Sbjct: 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183
Query: 455 VAFSEDSPFVLAIGG 469
V FS DS +++ GG
Sbjct: 1184 VCFSPDSKTLVSAGG 1198
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
I+ K D D+++ + S + AHD ++ I + +P ++A+ S DK VKLW+ +Q
Sbjct: 35 IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
C R N G+++SV F+ LA G+ G L ++D L
Sbjct: 95 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 265 HTDSVLGLAW-NKEFRNILASASADKQVKIWD 295
H S++ + W + E+ I+ASAS DK VK+W+
Sbjct: 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
I+ K D D+++ + S + AHD ++ I + +P ++A+ S DK VKLW+ +Q
Sbjct: 33 IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 92
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
C R N G+++SV F+ LA G+ G L ++D L
Sbjct: 93 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 265 HTDSVLGLAW-NKEFRNILASASADKQVKIWD 295
H S++ + W + E+ I+ASAS DK VK+W+
Sbjct: 54 HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY-NPLVPNLLATGSTDKMVKLWDLSNNQPS 440
I+ K D D+++ + S + AHD ++ I + +P ++A+ S DK VKLW+ +Q
Sbjct: 35 IKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94
Query: 441 CIASR-------NPKAGAVFSVAFSEDS-PFVLAIGGSKGKLEIWDTL 480
C R N G+++SV F+ LA G+ G L ++D L
Sbjct: 95 CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 265 HTDSVLGLAW-NKEFRNILASASADKQVKIWD 295
H S++ + W + E+ I+ASAS DK VK+W+
Sbjct: 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 27/225 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SP- 322
H SV + W + S+S DK +K+WD N + ++HH SP
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT-----NTLQTADVFNFEETVYSHHMSPV 152
Query: 323 ----QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378
++ G+ V + D + + S ++ +++W P ++ + D +K
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 379 GFDIRTAK---------SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429
+D+R A + S + +S+ T AH+ V + + +LL G TD +
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANT--AHNGKVNGLCFTSDGLHLLTVG-TDNRM 269
Query: 430 KLWDLSNNQPSCI----ASRNPKAGAVFSVAFSEDSPFVLAIGGS 470
+LW+ SN + + + N K G F+V+ S FV GS
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 28/197 (14%)
Query: 301 CNLTLEH---HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 357
C++ +H H V+ V W H + S SFD+++ + D ADV +
Sbjct: 88 CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--------LQTADVFN 139
Query: 358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD-PDSTSQQSSFTLHAHDKAVCTISYNPLV 416
++ H VS + + R K D S S L H + + +S++P
Sbjct: 140 FEETVYSHHMSPVSTKHCLV-AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198
Query: 417 PNLLATGSTDKMVKLWDLSNNQPSCI--------------ASRNPKAGAVFSVAFSEDSP 462
+LAT S D VKLWD+ I ++ G V + F+ D
Sbjct: 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL 258
Query: 463 FVLAIGGSKGKLEIWDT 479
+L + G+ ++ +W++
Sbjct: 259 HLLTV-GTDNRMRLWNS 274
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAA-------------DVESLAWDPHAEHSFV 369
+ +LSG D +V+ D S+ + A VE++ W PH F
Sbjct: 57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116
Query: 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--LLATGSTDK 427
S D T+K +D T ++ +++ ++ H +P+ L+A G+
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM----------SPVSTKHCLVAVGTRGP 166
Query: 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487
V+L DL + S I + + + +V++S ++LA + ++++WD +G
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQE--ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
Query: 488 RFSKYSKPKKPQSV 501
+++ KK Q+V
Sbjct: 225 TLDQHNG-KKSQAV 237
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 27/227 (11%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H+ V L W E +N + SAS D ++ +W+ + ++ H V A+ + +
Sbjct: 65 HSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 325 L------------LSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVVS 371
LS DR M +R+ T H G+ S + P E +
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-------ASSCQYVPDQETRLITG 176
Query: 372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431
D T +D+ T + S+ S H V ++S N L N+ +GS D V+L
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPS----GHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
WDL + + + + G + SV F D G G ++D
Sbjct: 233 WDLRITSRA-VRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFD 277
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 31/190 (16%)
Query: 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WAV-AADVES----------- 357
+ AW+H +L+SG+ +V DA ST S + W++ AAD E
Sbjct: 14 RTATFAWSHDKIPLLVSGTVSGTV---DANFSTDSSLELWSLLAADSEKPIASLQVDSKF 70
Query: 358 --LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415
L W H +L++G+++ + A + +S ++ S+ H +V T+ +N
Sbjct: 71 NDLDWS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-----HSSSVKTVKFNAK 124
Query: 416 VPNLLATGSTDKMVKLWDL-------SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG 468
N+LA+G + + +WD+ SN P V S+A+++ V A
Sbjct: 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184
Query: 469 GSKGKLEIWD 478
GS IWD
Sbjct: 185 GSSNFASIWD 194
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 41/237 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT-----------DKVQ 313
H+ SV + +N + N+LAS + ++ IWD+ KC + ++T D+V
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM--NKCTESPSNYTPLTPGQSMSSVDEVI 169
Query: 314 AVAWNHHSPQILLS-GSFD---------RSVVMKDARISTHSGFKWAVAADVESLAWDPH 363
++AWN + S GS + + V+ + S +SG K ++ + W P
Sbjct: 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV----VEWHPK 225
Query: 364 AEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420
+ D +I +D+R A + + +Q H K + ++ + +LL
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ-------GHQKGILSLDWCHQDEHLL 278
Query: 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGA-VFSVAFSEDSPFVLAIGGSKGKLEI 476
+ D V LW N + + S+ P G F F+ ++P + A K+E+
Sbjct: 279 LSSGRDNTVLLW---NPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 20/181 (11%)
Query: 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT------DKVQAVAWNHH 320
D V+ LAWN+ ++ ASA + IWD+ A K + L + + ++ V W+
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 321 SPQILLSGS---FDRSVVMKDARISTH--SGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375
+ + + + D S+++ D R + + SL W EH + S D
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
T+ + +P+S Q S F A + P P+L A S D +++ L
Sbjct: 286 TVLLW-------NPESAEQLSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336
Query: 436 N 436
N
Sbjct: 337 N 337
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
K + D+ + TL H V ++++P L+ + +A+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 282 LASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVM-- 336
+A+ S+DK +KI++V L TL H V V W H IL S S+D V++
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 337 ----KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAKSDPD 390
+ ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 84 EENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPMLLVASSDGKVSVVEFK------- 131
Query: 391 STSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDLSNNQ 438
S + AH V + S+ P TG D +VK+W +++
Sbjct: 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191
Query: 439 PSCI 442
+ +
Sbjct: 192 QTYV 195
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
NI+ S S D + +WDVA KC L HTD++ + ++H + +S S D ++ + D
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDL 339
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
+ + + + ++ V + DG+I+G+ D+ F+
Sbjct: 340 E---NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKM 428
H + + T Y + N+L +GS ++
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 36/199 (18%)
Query: 281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAV-AWNHHSPQILLSGSFDRSVVMKDA 339
IL S S D+ V++WD+ G C E H V+ + + + + +++GS D ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--- 231
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
W + ES D EH + + T + +P
Sbjct: 232 ---------WKLPK--ESSVPDHGEEHDYPLVFH----------TPEENPYFVG-----V 265
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
L H +V T+S + N++ +GS D + +WD++ Q C+ + ++S +
Sbjct: 266 LRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVA--QMKCLYILSGHTDRIYSTIYDH 320
Query: 460 DSPFVLAIGGSKGKLEIWD 478
+ ++ + IWD
Sbjct: 321 ERKRCIS-ASMDTTIRIWD 338
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
K + D+ + TL H V ++++P L+ + LA+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 282 LASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVM-- 336
LA+ S+DK +KI++V L TL H V V W H IL S S+D V++
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 337 ----KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAKSDPD 390
+ ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 84 EENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPLLLVASSDGKVSVVEFK------- 131
Query: 391 STSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDLSNNQ 438
S + AH V + S+ P TG D +VK+W +++
Sbjct: 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191
Query: 439 PSCI 442
+ +
Sbjct: 192 QTYV 195
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
NI+ S S D + +WDVA KC L HTD++ + ++H + +S S D ++ + D
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC-ISASXDTTIRIWDL 339
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
+ + + + ++ V + DG+I+G+ D+ F+
Sbjct: 340 E---NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW---------DANDYSRKFS 387
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKM 428
H + + T Y + N+L +GS ++
Sbjct: 388 YHHTNLSAITTFY--VSDNILVSGSENQF 414
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 36/199 (18%)
Query: 281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAV-AWNHHSPQILLSGSFDRSVVMKDA 339
IL S S D+ V++WD+ G C E H V+ + + + + +++GS D ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--- 231
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
W + ES D EH + + T + +P
Sbjct: 232 ---------WKLPK--ESSVPDHGEEHDYPLVFH----------TPEENPYFVG-----V 265
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
L H +V T+S + N++ +GS D + +WD++ Q C+ + ++S +
Sbjct: 266 LRGHXASVRTVSGH---GNIVVSGSYDNTLIVWDVA--QXKCLYILSGHTDRIYSTIYDH 320
Query: 460 DSPFVLAIGGSKGKLEIWD 478
+ ++ + IWD
Sbjct: 321 ERKRCIS-ASXDTTIRIWD 338
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343
S S D +K+WD+A + H +V VA + H + LS S D +++ D R
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203
Query: 344 HSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
+ A SLAW P FV E+GT+ D + S +
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK---------STSCVLSSA 254
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
H + V + ++P LA+ S D + + D S ++
Sbjct: 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 332
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
SVV +T A A V S +W P EH+ G D ++
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 186
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
K + D+ + TL H V ++++P L+ + LA+ S D+ +W N Q
Sbjct: 187 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
+ + K V A S VLA+ G K+ +W
Sbjct: 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 282 LASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVM-- 336
LA+ S+DK +KI++V L TL H V V W H IL S S+D V++
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 337 ----KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAKSDPD 390
+ ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 86 EENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPLLLVASSDGKVSVVEFK------- 133
Query: 391 STSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDLSNNQ 438
S + AH V + S+ P TG D +VK+W +++
Sbjct: 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193
Query: 439 PSCI 442
+ +
Sbjct: 194 QTYV 197
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 319
H V +A +F +++ SAS DK + +W + + N L H+ V V +
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
Q LSGS+D ++ + D T + DV S+A+ V D TIK
Sbjct: 97 DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 154
Query: 380 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 436
++ T +T+ +H + V + ++P N ++ + DK+VK+W+L+N
Sbjct: 155 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 437 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
C N G + +V S D A GG G+ +WD
Sbjct: 205 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 243
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA---- 339
S S D +++WD+ G HT V +VA++ + QI +SGS D+++ + +
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWNTLGVC 161
Query: 340 --RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQS 396
+ S +W V + + P++ + +VS D +K +++ K +
Sbjct: 162 KYTVQDESHSEW-----VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---- 212
Query: 397 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
H + T++ +P +L A+G D LWDL+ +
Sbjct: 213 -----GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGK 248
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH--SPQILLSGSFDR 332
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
K + D+ + TL H V ++++P L+ + A+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL-----TLEHHTDKVQAVAWNH 319
H V +A +F +++ SAS DK + +W + + N L H+ V V +
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379
Q LSGS+D ++ + D T + DV S+A+ V D TIK
Sbjct: 74 DG-QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTIKL 131
Query: 380 FDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSN 436
++ T +T+ +H + V + ++P N ++ + DK+VK+W+L+N
Sbjct: 132 WN----------TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 437 NQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
C N G + +V S D A GG G+ +WD
Sbjct: 182 ----CKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWD 220
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA---- 339
S S D +++WD+ G HT V +VA++ + QI +SGS D+++ + +
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWNTLGVC 138
Query: 340 --RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQS 396
+ S +W V + + P++ + +VS D +K +++ K +
Sbjct: 139 KYTVQDESHSEW-----VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---- 189
Query: 397 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
H + T++ +P +L A+G D LWDL+ +
Sbjct: 190 -----GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGK 225
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
N SAS D +++W++ G+C HT V +VA++ + QI+ G + V
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSF 398
H+ + A V + + P + +VS D +K +D+ T + D
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-------- 191
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438
L H V +++ +P +L A+ D + +LWDL+ +
Sbjct: 192 -LKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDLTKGE 229
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
++ S D VK+WD+A G+ L+ HT+ V +V SP L S D+ V +
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVT---VSPDGSLCASSDKDGVARLWD 224
Query: 341 ISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
++ + A A + + + P+ + + E G I+ FD+ + +
Sbjct: 225 LTKGEALSEMAAGAPINQICFSPN-RYWMCAATEKG-IRIFDLENKDIIVELAPE----- 277
Query: 400 LHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
H K + C + L +G TD ++++W +S N
Sbjct: 278 -HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 277 EFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQILLSGSFDR 332
+F ILAS S D +V IW G+ + H H+ V +V W H P +L++ S +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 333 -SVVMKDARISTHSGFKWAVAADVESLAWDP-----HAEHSFVVSLEDGTIKGFD--IRT 384
SVV +T A A V S +W P EH+ G D ++
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184
Query: 385 AKSDPDSTSQQSSFTLHAHDKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCI 442
K + D+ + TL H V ++++P L+ + LA+ S D+ +W N Q
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244
Query: 443 AS--RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
+ + K V A S VLA+ G K+ +W
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 282 LASASADKQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNH-HSPQILLSGSFDRSVVM-- 336
LA+ S+DK +KI++V L TL H V V W H IL S S+D V++
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 337 ----KDARISTHSGFKWAVAADVESLAWDPHAEHS--FVVSLEDGTIKGFDIRTAKSDPD 390
+ ++I+ H+ +A V S+ W PH E+ +V+ DG + + +
Sbjct: 84 EENGRWSQIAVHA----VHSASVNSVQWAPH-EYGPLLLVASSDGKVSVVEFK------- 131
Query: 391 STSQQSSFTLHAHDKAVCTISYNPLV------------PNLLATGSTDKMVKLWDLSNNQ 438
S + AH V + S+ P TG D +VK+W +++
Sbjct: 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191
Query: 439 PSCI 442
+ +
Sbjct: 192 QTYV 195
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP--FVLAIGGSKGKLEI 476
LLATGS+D +KLWDL NQ C RN G SV SP +LA + G L++
Sbjct: 721 LLATGSSDCFLKLWDL--NQKEC---RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 477 WDTLS-----DAGISNRFSKYSKPKKPQSVI 502
WD S + F P++ VI
Sbjct: 776 WDATSANERKSINVKQFFLNLEDPQEDMEVI 806
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H D VL A++ + R +A+ S DK+VKIW+ G+ T + H+++V + + S +
Sbjct: 662 HEDEVLCCAFSTDDR-FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL 720
Query: 325 LL-SGSFD 331
LL +GS D
Sbjct: 721 LLATGSSD 728
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 62/209 (29%)
Query: 273 AWNKEF---RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS 329
W+ +F L S+S D ++++W+ KC I L G
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKC----------------------IFLRGH 1049
Query: 330 FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389
+ +KD R+ +S L+W SF DGT+K ++I T +
Sbjct: 1050 QE---TVKDFRLLKNSRL----------LSW------SF-----DGTVKVWNIITGNKEK 1085
Query: 390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 449
D F H C IS++ ++ S DK K+W P +
Sbjct: 1086 D-------FVCHQGTVLSCDISHD---ATKFSSTSADKTAKIWSFDLLLP--LHELRGHN 1133
Query: 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
G V AFS DS +LA G G++ IW+
Sbjct: 1134 GCVRCSAFSVDST-LLATGDDNGEIRIWN 1161
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 38/182 (20%)
Query: 278 FRNILASASADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNH-HSPQILLSGSFDRSV 334
+ LA+ S+D+ VKI+DV G L L H V VAW H IL S S+DR V
Sbjct: 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 335 VMKDARIST------HSGFKWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAK 386
++ T H+G + V S+ W PH ++ +++ DG I + T
Sbjct: 84 IIWREENGTWEKSHEHAGHD----SSVNSVCWAPH-DYGLILACGSSDGAIS---LLTYT 135
Query: 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLV-------------PNLL---ATGSTDKMVK 430
+ ++ + +AH +S+ P V PN + A+G D ++K
Sbjct: 136 GEGQWEVKKIN---NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIK 192
Query: 431 LW 432
LW
Sbjct: 193 LW 194
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 33/240 (13%)
Query: 265 HTDSVLGLAW-NKEFRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS 321
H V +AW + + NILAS S D++V IW G + EH H V +V W H
Sbjct: 56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD 115
Query: 322 PQILLS-GSFDRSVVM--------------KDARISTHSGFKWAVAADVESLAWDPHAEH 366
++L+ GS D ++ + +A + WA A SL P +
Sbjct: 116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQK 175
Query: 367 -SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP---LVPNLLAT 422
+++ G I+ K + D ++ L AH V +++ P L + +A+
Sbjct: 176 PNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQ-KLEAHSDWVRDVAWAPSIGLPTSTIAS 233
Query: 423 GSTDKMVKLW---DLSNN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477
S D V +W D S+N P + N V+ V++S + +LA+ G K+ +W
Sbjct: 234 CSQDGRVFIWTCDDASSNTWSPKLLHKFND---VVWHVSWSI-TANILAVSGGDNKVTLW 289
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 62/175 (35%), Gaps = 50/175 (28%)
Query: 282 LASASADKQVKIW---DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338
AS D +K+W + K LE H+D V+ VAW +P I L S S +D
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW---APSIGLPTSTIASC-SQD 237
Query: 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398
R+ F W D S W P H F
Sbjct: 238 GRV-----FIW-TCDDASSNTWSPKLLHKF------------------------------ 261
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGAV 452
+ V +S++ + N+LA D V LW S + Q CI+ N G+V
Sbjct: 262 -----NDVVWHVSWS-ITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSV 310
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 284 SASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342
S S D VK+W+ T E H V VA+N P SG DR+V + S
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 343 THSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFT 399
T F + V + + P + ++++ D TIK +D +T + T
Sbjct: 174 T-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCVAT 223
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
L H V ++P +P ++ +GS D +K+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 459 -EDSPFVLAIGGSKGKLEIWD 478
D P+++ ++IWD
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWD 214
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
+ +AS D +KIWD C TLE H V + H + I++SGS D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTL 252
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 282 LASASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
+ S S D VK+W+ T E H V VA+N P SG DR+V +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 341 ISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSS 397
ST F + V + + P + ++++ D TIK +D +T +
Sbjct: 172 QST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCV 221
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
TL H V ++P +P ++ +GS D +K+W+ S
Sbjct: 222 ATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 459 -EDSPFVLAIGGSKGKLEIWDTLSDAGIS 486
D P+++ ++IWD + + ++
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWDYQTKSCVA 222
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428
+V +D I+ F+ T + D AH + +I+ +P P +L+ GS D
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVD---------FEAHPDYIRSIAVHPTKPYVLS-GSDDLT 120
Query: 429 VKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476
VKLW+ NN C+A NPK + F+ + + V ++G S +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 477 WDTLSDAGISNRFSKYSKPKKPQSV 501
T + G+ N Y P KP +
Sbjct: 180 -TTGQERGV-NYVDYYPLPDKPYMI 202
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 282 LASASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340
+ S S D VK+W+ T E H V VA+N P SG DR+V +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 341 ISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSS 397
ST F + V + + P + ++++ D TIK +D +T +
Sbjct: 172 QST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCV 221
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
TL H V ++P +P ++ +GS D +K+W+ S
Sbjct: 222 ATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 459 -EDSPFVLAIGGSKGKLEIWDTLSDAGIS 486
D P+++ ++IWD + + ++
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWDYQTKSCVA 222
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428
+V +D I+ F+ T + D AH + +I+ +P P +L+ GS D
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVD---------FEAHPDYIRSIAVHPTKPYVLS-GSDDLT 120
Query: 429 VKLWDLSNNQP------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476
VKLW+ NN C+A NPK + F+ + + V ++G S +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAF-NPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 477 WDTLSDAGISNRFSKYSKPKKPQSV 501
T + G+ N Y P KP +
Sbjct: 180 -TTGQERGV-NYVDYYPLPDKPYMI 202
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 15/156 (9%)
Query: 284 SASADKQVKIWDVAAG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342
S S D VK+W+ T E H V VA+N P SG DR+V + S
Sbjct: 114 SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 343 THSGFKWAVAAD--VESLAWDPHAEHSFVVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFT 399
T + F + V + + P + ++++ D TIK +D +T + T
Sbjct: 174 TPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------KSCVAT 223
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
L H V ++P +P ++ +GS D +K+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS 258
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458
T H+ V +++NP P+ A+G D+ VK+W L + P+ + + G + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 459 -EDSPFVLAIGGSKGKLEIWD 478
D P+++ ++IWD
Sbjct: 195 LPDKPYMIT-ASDDLTIKIWD 214
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV 334
+ +AS D +KIWD C TLE H V + H + I++SGS D ++
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF-HPTLPIIISGSEDGTL 252
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL 305
H+ SV GL W+ + I ASASADK +KIW+VA K T+
Sbjct: 238 HSGSVFGLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTI 277
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 272 LAWNKEFRNILASASADKQ---VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
++W+ E + I A ++ V ++D NLT + + +V + P ++SG
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA--MNSVDFKPSRPFRIISG 166
Query: 329 SFDRSVVMKD-------ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI---K 378
S D +V + + + H+ F V S+ ++P F + DGTI
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFGEHTKF-------VHSVRYNPDGSL-FASTGGDGTIVLYN 218
Query: 379 GFD-IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435
G D +T + DS AH +V ++++P +A+ S DK +K+W+++
Sbjct: 219 GVDGTKTGVFEDDSLKNV------AHSGSVFGLTWSPD-GTKIASASADKTIKIWNVA 269
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 411
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 472 GKLEIWDTLSD------AGISNRFS 490
+WD L AG NR S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVS 316
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 400 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 456
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 457 FSEDSPFVLAIGGSKGKLEIWD 478
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 325 LLSGSFDRSVVMKDAR 340
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 411
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 472 GKLEIWDTLSD------AGISNRFS 490
+WD L AG NR S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVS 316
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 400 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 456
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 457 FSEDSPFVLAIGGSKGKLEIWD 478
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 325 LLSGSFDRSVVMKDAR 340
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 411
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 196 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 244
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 245 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 302
Query: 472 GKLEIWDTLSD------AGISNRFS 490
+WD L AG NR S
Sbjct: 303 FNCNVWDALKADRAGVLAGHDNRVS 327
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 224
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 273
Query: 400 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 456
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 274 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 329
Query: 457 FSEDSPFVLAIGGSKGKLEIWD 478
D +A G L+IW+
Sbjct: 330 GVTDDGMAVATGSWDSFLKIWN 351
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 194 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 251
Query: 325 LLSGSFDRSVVMKDAR 340
+GS D + + D R
Sbjct: 252 FATGSDDATCRLFDLR 267
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 411
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 472 GKLEIWDTLSD------AGISNRFS 490
+WD L AG NR S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVS 316
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 400 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 456
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 457 FSEDSPFVLAIGGSKGKLEIWD 478
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 325 LLSGSFDRSVVMKDAR 340
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTIS 411
DV SL+ P FV D + K +D+R + +FT H D A+C
Sbjct: 185 GDVMSLSLAPDTRL-FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAIC--- 233
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+ P N ATGS D +L+DL +Q S + + SV+FS+ +LA G
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDD 291
Query: 472 GKLEIWDTLSD------AGISNRFS 490
+WD L AG NR S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVS 316
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 19/202 (9%)
Query: 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339
N + ++S D +WD+ G+ T HT V +++ + ++ +SG+ D S + D
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDV 213
Query: 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
R +D+ ++ + P+ ++F +D T + FD+R +
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----------ELM 262
Query: 400 LHAHDKAVCTISYNPLVPN--LLATGSTDKMVKLWD-LSNNQPSCIASRNPKAGAVFSVA 456
++HD +C I+ + LL G D +WD L ++ +A + + S
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV----SCL 318
Query: 457 FSEDSPFVLAIGGSKGKLEIWD 478
D +A G L+IW+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
HT V+ L+ + R + S + D K+WDV G C T H + A+ + +
Sbjct: 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNA 240
Query: 325 LLSGSFDRSVVMKDAR 340
+GS D + + D R
Sbjct: 241 FATGSDDATCRLFDLR 256
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 340
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 341 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 460 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 501
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 319
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 378
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 430
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 455
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 456 AFSEDSPFVLAIGGSKGKLEIWD 478
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 356
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 357 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407
S H A+ ++ +S D T++ +D+ T ++ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET-------YQRFVGHKSDVMS 112
Query: 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 30/186 (16%)
Query: 265 HTDSVLGLAWNKEFRNILA-SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQ 323
H V LA ++E N A S+S DK +++WD+ G H +V +VA++ + Q
Sbjct: 75 HNHFVSDLALSQE--NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 324 ILLSGSFDRSV----VMKDARIST-----HSGFKWAVAADVESLAWDPHAEHSFVVSLE- 373
IL +G+ +R + ++ + + S+ HS W + + F
Sbjct: 133 ILSAGA-EREIKLWNILGECKFSSAEKENHS--DWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 374 ---DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430
DG +K ++ T+ Q +T AH+ V +S +P +ATG DK +
Sbjct: 190 VGWDGRLKVWN----------TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLL 238
Query: 431 LWDLSN 436
+WD+ N
Sbjct: 239 IWDILN 244
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 418 NLLATGST-DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476
N A S+ DK ++LWDL + V+SVAFS D+ +L+ G + ++++
Sbjct: 88 NCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAER-EIKL 144
Query: 477 WDTLSDAGISN 487
W+ L + S+
Sbjct: 145 WNILGECKFSS 155
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 29/217 (13%)
Query: 281 ILASASADKQVKIWDVAAGKCN-------LTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333
+L S S DK V IW + + N L H V +A + + +S S+D++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FAISSSWDKT 99
Query: 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS 393
+ + D R T ++V S+A+ P E IK ++I
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER-EIKLWNIL-------GEC 151
Query: 394 QQSSFTLHAHDKAVCTISYNPLVPN---------LLATGSTDKMVKLWDLSNNQPSCIAS 444
+ SS H V + Y+P++ + A+ D +K+W N +
Sbjct: 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW---NTNFQIRYT 208
Query: 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481
V ++ S + ++ A GG KL IWD L+
Sbjct: 209 FKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILN 244
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 340
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 341 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 460 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 501
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 455
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 456 AFSEDSPFVLAIGGSKGKLEIWD 478
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 319
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 378
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 430
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 356
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 357 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407
S H A+ ++ +S D T++ +D+ T ++ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET-------YQRFVGHKSDVMS 112
Query: 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 340
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 134
Query: 341 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
++T G W V + + + D +K +++ + + D
Sbjct: 135 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 185
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 186 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 241
Query: 460 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 501
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 242 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 284
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 455
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 456 AFSEDSPFVLAIGGSKGKLEIWD 478
+ D + L+ K L +WD
Sbjct: 66 TLTADGAYALSASWDK-TLRLWD 87
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 319
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 378
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 70 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 430
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 127 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 173
Query: 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 174 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 218
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 356
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 53
Query: 357 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407
S H A+ ++ +S D T++ +D+ T ++ F H D
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET-------YQRFVGHKSDVMS 106
Query: 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
I +++ +GS DK +K+W + + C+A+
Sbjct: 107 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 137
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 340
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI-ISGSRDKTIKVWTIKGQC 140
Query: 341 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD--------- 191
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE---VFSLAFSP 247
Query: 460 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 501
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 455
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 456 AFSEDSPFVLAIGGSKGKLEIWD 478
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 340
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 341 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 460 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 501
+ ++ A + K+ D L D + F+ YSK +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSKAAEPHAV 290
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 455
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 456 AFSEDSPFVLAIGGSKGKLEIWD 478
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 319
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 378
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 430
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 356
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 357 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407
S H A+ ++ +S D T++ +D+ T ++ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET-------YQRFVGHKSDVMS 112
Query: 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAW-NHHSPQ 323
HT VL + W+ + + +AS DK K+WD+++ + + + H V+ + W +
Sbjct: 85 HTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYS 142
Query: 324 ILLSGSFDRSVVMKDARIS 342
+++GS+D+++ D R S
Sbjct: 143 CVMTGSWDKTLKFWDTRSS 161
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK-LEIWDTL 480
T S DK K+WDLS+NQ IA + V ++ + + + + GS K L+ WDT
Sbjct: 103 TASCDKTAKMWDLSSNQAIQIAQHD---APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 481 S 481
S
Sbjct: 160 S 160
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 404 DKAVCTISYNP--LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 461
D ++ +S++P L N L GS V+ W++ ++ + ++ G V V +S+D
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 462 PFVLAIGGSKGKLEIWDTLSDAGI 485
V K ++WD S+ I
Sbjct: 99 SKVFTASCDK-TAKMWDLSSNQAI 121
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 21/224 (9%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV---VMKDAR 340
SAS DK +++WDVA G+ H V +V + + I +SGS D+++ +K
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI-ISGSRDKTIKVWTIKGQC 140
Query: 341 ISTHSGFK-WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399
++T G W V + + + D +K +++ + + D
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------- 191
Query: 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459
H+ + T++ +P L+A+ D + LW+L+ + S + VFS+AFS
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSP 247
Query: 460 DSPFVLAIGGSKGKLEIWD--TLSDAGISNRFSKYSKPKKPQSV 501
+ ++ A + K+ D L D + F+ YS +P +V
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVD-DLRPEFAGYSAAAEPHAV 290
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS-NNQPSCIASRNPKAGA--VFSV 455
TL H+ V +++ + PNLL + S DK + W L+ ++Q + R+ K + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 456 AFSEDSPFVLAIGGSKGKLEIWD 478
+ D + L+ K L +WD
Sbjct: 72 TLTADGAYALSASWDK-TLRLWD 93
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 93/228 (40%), Gaps = 33/228 (14%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----GKCNLTLEHHTDKVQAVAWNH 319
H V LA + N+L SAS DK + W + G + + H+ VQ
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 320 HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIK 378
LS S+D+++ + D ++T ++ V + ++ D + S ++S D TIK
Sbjct: 76 DGA-YALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN--------LLATGSTDKMVK 430
+ I+ Q TL H+ V + +VPN + + DKMVK
Sbjct: 133 VWTIK----------GQCLATLLGHNDWVSQVR---VVPNEKADDDSVTIISAGNDKMVK 179
Query: 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
W+L NQ A + ++ S D + A G G++ +W+
Sbjct: 180 AWNL--NQFQIEADFIGHNSNINTLTASPDGTLI-ASAGKDGEIMLWN 224
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD-------VE 356
TLE H V ++A + P +LLS S D++++ W + D V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVR 59
Query: 357 SLAWDPH--------AEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407
S H A+ ++ +S D T++ +D+ T ++ F H D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET-------YQRFVGHKSDVMS 112
Query: 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444
I +++ +GS DK +K+W + + C+A+
Sbjct: 113 VDIDKK---ASMIISGSRDKTIKVWTI---KGQCLAT 143
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 99/266 (37%), Gaps = 46/266 (17%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQI 324
H + VL + W K+ R I++S S D +V +WD + V A A+ I
Sbjct: 63 HGNKVLCMDWCKDKRRIVSS-SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 325 LLSG----------SFDR---------SVVM------------KDARISTHSGFKWAVAA 353
G +FD+ SV M D +I T SG
Sbjct: 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 181
Query: 354 DVES--LAWDPHAEHSFVVSL-----EDGTI---KGFDIRTAKSDPDSTSQQSSFTLHAH 403
DVES L H + V+ L E G G D + D S +F H
Sbjct: 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 241
Query: 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF 463
D V ++ Y P + A+GS D +L+DL ++ I S+ SV FS
Sbjct: 242 D--VNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 464 VLAIGGSKGKLEIWDTLSDAGISNRF 489
+ A G + + +WD L + +S F
Sbjct: 299 LFA-GYNDYTINVWDVLKGSRVSILF 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----IASRNPKAGAV 452
+ L H K V ++ NP LAT S D+ VK+WDL + + R+P A
Sbjct: 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
Query: 453 FS 454
FS
Sbjct: 304 FS 305
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----IASRNPKAGAV 452
+ L H K V ++ NP LAT S D+ VK+WDL + + R+P A
Sbjct: 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
Query: 453 FS 454
FS
Sbjct: 304 FS 305
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC-----IASRNPKAGAV 452
+ L H K V ++ NP LAT S D+ VK+WDL + + R+P A
Sbjct: 245 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 304
Query: 453 FS 454
FS
Sbjct: 305 FS 306
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 11/152 (7%)
Query: 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343
S D VK+WD++ + H+ +V VA I LS D +++ D R
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Query: 344 HSGFKWAVAADV--ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401
+ A+D S+ W P + +F E G + +I+ +PDS T
Sbjct: 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK----NPDSAQ-----TSA 266
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
H + + ++Y+ LA+ S D V + D
Sbjct: 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412
A V +AW +E +V+ + G ++ ++I +S + F + HD V T+S
Sbjct: 95 AGVTDVAW--VSEKGILVASDSGAVELWEILEKES-----LLVNKFAKYEHDDIVKTLSV 147
Query: 413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472
+ +G D VK+WDLS Q + + S N + V VA + G G
Sbjct: 148 FSDGTQAV-SGGKDFSVKVWDLS--QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG 204
Query: 473 KLEIWDT 479
++ +WDT
Sbjct: 205 RILLWDT 211
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436
F H V +NP L+AT S D VKLWDL N
Sbjct: 197 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 235
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 398 FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436
F H V +NP L+AT S D VKLWDL N
Sbjct: 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAF 457
TL H + +I + TGS D +KLWD+SN Q C+A+ ++P V V F
Sbjct: 69 TLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQ--CVATWKSPV--PVKRVEF 123
Query: 458 SEDSPFVLAI 467
S + LAI
Sbjct: 124 SPCGNYFLAI 133
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 36/182 (19%)
Query: 278 FRNILASASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLS-----GSF 330
F + SAD +K+WDV+ G+C T + +V+ ++ IL + GS
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 331 DRSVVMKDA--------------RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376
+ + +D+ +I TH G A A W ++ + +DG
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA-----GWSTKGKY-IIAGHKDGK 198
Query: 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436
I +D+ DS + H+K++ + ++P + + T S D L D+S
Sbjct: 199 ISKYDVSNNYEYVDS--------IDLHEKSISDMQFSPDLTYFI-TSSRDTNSFLVDVST 249
Query: 437 NQ 438
Q
Sbjct: 250 LQ 251
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 416 VPNLLATGSTDKMVKLWDLSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 473
P +L S ++ K+WD N+PS I S + V + V+A GG G
Sbjct: 202 TPEILTVNSIGQL-KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGM 260
Query: 474 LEIWD 478
L IWD
Sbjct: 261 LSIWD 265
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFT-----LHAHDKAVCTISYNPLVPNLLATGSTDKMV 429
G +K +D R ++P SQ S T LH D+ +P +++ATG D M+
Sbjct: 212 GQLKIWDFRQQGNEP---SQILSLTGDRVPLHCVDR-------HPNQQHVVATGGQDGML 261
Query: 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482
+WD+ ++ ++ V F +P L G L WD +D
Sbjct: 262 SIWDVRQGTMP-VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD 313
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421
P+ +H +DG + +D+R + P S L AH+ + + ++P P L
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQG-TMPVSL-------LKAHEAEMWEVHFHPSNPEHLF 297
Query: 422 TGSTDKMVKLWDLSNNQP 439
T S D + WD S + P
Sbjct: 298 TCSEDGSLWHWDASTDVP 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328
+L +A++ + + LAS + D + I+D+A GK TLE H ++++ ++ S Q+L++
Sbjct: 167 ILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTA 224
Query: 329 SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD 388
S D + + D + + +G A+ V ++A+ P H FV S D ++K +D+ T
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGT---- 279
Query: 389 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433
+ T H V + YN +++ G D+ + ++D
Sbjct: 280 -----RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD-DQEIHIYD 318
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434
G +K +DI S P + S S D + + P L+ G + +WDL
Sbjct: 72 GCVKVWDI----SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL-SIWDL 126
Query: 435 SNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478
+ P A A A +++A S DS + S G + +WD
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSC-CSDGNIAVWD 169
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 357 SLAWDPHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDK----AVCTIS 411
+L+ D + ++S E G+I F D+RT ++ + Q+ F H K V +
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE--AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+NP VP+++A D + + ++ C + P AV SV +S LA+G
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGK-QLAVGKQN 213
Query: 472 GKL 474
G +
Sbjct: 214 GTV 216
>pdb|1OVW|A Chain A, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|B Chain B, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|C Chain C, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|D Chain D, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
Length = 398
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 444 SRNPKAGAVFSVAFSED----SPFVLAIGGSKGK------LEIWDTLSDA 483
SRN KAGA + + + +PF+ +G KG+ L+IW+ S A
Sbjct: 158 SRNSKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRA 207
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ----AVAWNHH 320
H+ V+ L++N L SA D +++ WDV + TL H D ++ +A + H
Sbjct: 300 HSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 358
Query: 321 SPQILLSGSFDRSVVMKDAR 340
+ G FD + K R
Sbjct: 359 GDSLAEPGVFDVKFLKKGWR 378
>pdb|2OVW|A Chain A, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|B Chain B, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|C Chain C, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|D Chain D, Endoglucanase I Complexed With Cellobiose
pdb|3OVW|A Chain A, Endoglucanase I Native Structure
pdb|3OVW|B Chain B, Endoglucanase I Native Structure
pdb|4OVW|A Chain A, Endoglucanase I Complexed With Epoxybutyl Cellobiose
pdb|4OVW|B Chain B, Endoglucanase I Complexed With Epoxybutyl Cellobiose
Length = 411
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 444 SRNPKAGAVFSVAFSED----SPFVLAIGGSKGK------LEIWDTLSDA 483
SRN KAGA + + + +PF+ +G KG+ L+IW+ S A
Sbjct: 158 SRNSKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRA 207
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 357 SLAWDPHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDK----AVCTIS 411
+L+ D + ++S E G+I F D+RT ++ + Q+ F H K V +
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE--AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+NP VP+++A D + + ++ C + P AV SV +S LA+G
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGK-QLAVGKQN 213
Query: 472 GKL 474
G +
Sbjct: 214 GTV 216
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ----AVAWNHH 320
H+ V+ L++N L SA D +++ WDV + TL H D ++ +A + H
Sbjct: 290 HSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348
Query: 321 SPQILLSGSFDRSVVMKDAR 340
+ G FD + K R
Sbjct: 349 GDSLAEPGVFDVKFLKKGWR 368
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 357 SLAWDPHAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDK----AVCTIS 411
+L+ D + ++S E G+I F D+RT ++ + Q+ F H K V +
Sbjct: 99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE--AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471
+NP VP+++A D + + ++ C + P AV SV +S LA+G
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGK-QLAVGKQN 213
Query: 472 GKL 474
G +
Sbjct: 214 GTV 216
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPLVPNLLATG-STDKMVKL 431
DG+ + D++ +SDPD +Q L+ T+ +P LL+ S +++ +L
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 185
Query: 432 WDLSN 436
D+S+
Sbjct: 186 DDMSS 190
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPLVPNLLATG-STDKMVKL 431
DG+ + D++ +SDPD +Q L+ T+ +P LL+ S +++ +L
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 185
Query: 432 WDLS 435
D+S
Sbjct: 186 DDMS 189
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 316 AWNHHSPQILLSG-----SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE----H 366
A+ S +L+SG S R V+K R++ + K D +W+ E +
Sbjct: 134 AYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYY 193
Query: 367 SFVVSLED---GTIKGFDI---RTAKSDPDST 392
S V D GT + FD+ RT K D D T
Sbjct: 194 SLVAEQSDIVIGTREEFDVLENRTEKGDNDET 225
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 143
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437
H A+ + ++P PNLL + S D ++LW++ +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 184
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPLVPNLLATG-STDKMVKL 431
DG+ + D++ +SDPD +Q L+ T+ +P LL+ S +++ +L
Sbjct: 126 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRL 185
Query: 432 WDLS 435
D+S
Sbjct: 186 DDMS 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,012,651
Number of Sequences: 62578
Number of extensions: 484820
Number of successful extensions: 1630
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 402
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)