Query 010769
Match_columns 502
No_of_seqs 795 out of 4255
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0270 WD40 repeat-containing 100.0 5.2E-83 1.1E-87 581.4 35.1 458 1-493 3-462 (463)
2 KOG0271 Notchless-like WD40 re 100.0 2.5E-46 5.4E-51 335.1 25.7 301 136-492 112-451 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.7E-43 1E-47 318.1 20.7 286 137-478 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.1E-41 2.4E-46 305.3 24.1 290 136-478 154-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-41 2.5E-46 309.0 18.6 249 206-495 184-433 (459)
6 KOG0286 G-protein beta subunit 100.0 1.6E-39 3.5E-44 282.1 29.2 292 136-478 52-343 (343)
7 KOG0273 Beta-transducin family 100.0 1.4E-37 3E-42 286.1 27.5 299 138-490 177-492 (524)
8 KOG0284 Polyadenylation factor 100.0 9.3E-39 2E-43 288.9 17.5 285 139-480 96-380 (464)
9 KOG0263 Transcription initiati 100.0 7.6E-38 1.7E-42 305.4 24.6 264 206-485 387-654 (707)
10 KOG0315 G-protein beta subunit 100.0 1.5E-36 3.2E-41 257.9 26.8 291 152-494 11-302 (311)
11 KOG0286 G-protein beta subunit 100.0 2.4E-35 5.3E-40 256.1 26.8 254 194-495 59-318 (343)
12 KOG0279 G protein beta subunit 100.0 8.7E-35 1.9E-39 251.2 28.7 288 136-481 12-314 (315)
13 KOG0295 WD40 repeat-containing 100.0 2.3E-35 5E-40 263.4 25.1 287 136-479 105-405 (406)
14 KOG0291 WD40-repeat-containing 100.0 3.1E-34 6.7E-39 277.7 32.1 291 140-490 266-560 (893)
15 KOG0277 Peroxisomal targeting 100.0 2.4E-35 5.3E-40 251.3 21.5 293 143-479 12-308 (311)
16 KOG0296 Angio-associated migra 100.0 2.6E-34 5.6E-39 256.9 28.1 283 137-480 62-398 (399)
17 KOG0279 G protein beta subunit 100.0 1.9E-34 4E-39 249.2 25.2 249 208-495 27-277 (315)
18 KOG0273 Beta-transducin family 100.0 4.2E-34 9E-39 263.2 28.6 282 138-480 234-523 (524)
19 KOG0263 Transcription initiati 100.0 1.2E-34 2.6E-39 283.1 22.3 274 139-468 378-703 (707)
20 KOG0265 U5 snRNP-specific prot 100.0 1.9E-33 4.2E-38 245.3 25.0 248 206-493 56-309 (338)
21 KOG0284 Polyadenylation factor 100.0 1.2E-34 2.6E-39 262.3 16.1 246 193-487 99-344 (464)
22 KOG0265 U5 snRNP-specific prot 100.0 5.8E-33 1.3E-37 242.3 25.3 288 136-477 44-335 (338)
23 KOG0313 Microtubule binding pr 100.0 8.1E-33 1.7E-37 248.4 26.6 292 136-480 102-418 (423)
24 PLN00181 protein SPA1-RELATED; 100.0 7.1E-32 1.5E-36 290.0 38.2 295 137-479 481-792 (793)
25 KOG0285 Pleiotropic regulator 100.0 9.9E-34 2.1E-38 252.3 19.2 241 203-488 157-397 (460)
26 KOG0264 Nucleosome remodeling 100.0 2.5E-32 5.4E-37 251.2 28.9 251 206-481 134-405 (422)
27 cd00200 WD40 WD40 domain, foun 100.0 1.1E-31 2.4E-36 253.6 34.3 283 137-478 7-289 (289)
28 KOG0319 WD40-repeat-containing 100.0 3.2E-33 6.9E-38 270.4 23.9 291 138-483 322-622 (775)
29 KOG0266 WD40 repeat-containing 100.0 2.7E-32 5.8E-37 273.3 29.6 286 138-480 158-454 (456)
30 KOG0645 WD40 repeat protein [G 100.0 1.2E-31 2.7E-36 230.8 27.0 283 136-480 11-311 (312)
31 KOG0276 Vesicle coat complex C 100.0 4.4E-32 9.4E-37 257.7 26.5 288 138-483 12-301 (794)
32 KOG0318 WD40 repeat stress pro 100.0 2.7E-31 5.8E-36 247.8 31.0 323 136-485 187-565 (603)
33 KOG0319 WD40-repeat-containing 100.0 3.2E-32 6.8E-37 263.5 24.8 296 139-493 281-590 (775)
34 KOG0293 WD40 repeat-containing 100.0 1.1E-31 2.4E-36 243.4 24.5 290 136-482 221-515 (519)
35 KOG0281 Beta-TrCP (transducin 100.0 4.9E-33 1.1E-37 246.9 14.6 277 138-485 196-482 (499)
36 KOG0282 mRNA splicing factor [ 100.0 2.4E-32 5.3E-37 252.6 19.4 289 136-478 211-503 (503)
37 KOG0277 Peroxisomal targeting 100.0 5.4E-32 1.2E-36 230.9 18.7 219 265-493 59-278 (311)
38 KOG0285 Pleiotropic regulator 100.0 2.6E-31 5.6E-36 236.9 23.6 284 136-480 148-439 (460)
39 KOG0291 WD40-repeat-containing 100.0 1.7E-30 3.6E-35 251.9 30.7 322 139-485 96-513 (893)
40 KOG0315 G-protein beta subunit 100.0 1.7E-30 3.8E-35 221.0 26.2 281 109-458 21-309 (311)
41 KOG0295 WD40 repeat-containing 100.0 1.1E-31 2.4E-36 239.9 19.6 244 205-490 116-374 (406)
42 KOG0281 Beta-TrCP (transducin 100.0 1.2E-32 2.7E-37 244.3 12.9 231 193-485 200-433 (499)
43 KOG0310 Conserved WD40 repeat- 100.0 1.2E-30 2.6E-35 241.9 26.2 285 137-481 24-310 (487)
44 KOG0275 Conserved WD40 repeat- 100.0 6.6E-32 1.4E-36 237.7 16.3 289 138-478 212-507 (508)
45 KOG0266 WD40 repeat-containing 100.0 1.7E-30 3.6E-35 260.4 28.7 250 204-492 166-421 (456)
46 KOG0305 Anaphase promoting com 100.0 3.7E-30 8E-35 247.7 29.4 280 142-483 180-464 (484)
47 KOG0283 WD40 repeat-containing 100.0 1.7E-30 3.6E-35 256.3 25.1 264 205-481 275-577 (712)
48 KOG0276 Vesicle coat complex C 100.0 7.7E-31 1.7E-35 249.2 21.4 239 206-485 22-262 (794)
49 KOG0292 Vesicle coat complex C 100.0 1E-30 2.2E-35 257.2 22.5 254 203-488 15-288 (1202)
50 KOG0292 Vesicle coat complex C 100.0 4.1E-30 8.9E-35 252.9 26.1 288 138-483 8-324 (1202)
51 PTZ00421 coronin; Provisional 100.0 3.6E-29 7.8E-34 249.8 31.9 255 206-487 29-297 (493)
52 PLN00181 protein SPA1-RELATED; 100.0 4.8E-29 1E-33 268.1 34.8 253 193-484 486-742 (793)
53 KOG0772 Uncharacterized conser 100.0 1.2E-29 2.7E-34 236.1 25.0 303 136-478 164-485 (641)
54 KOG0264 Nucleosome remodeling 100.0 1.8E-29 4E-34 232.4 25.5 267 137-436 122-405 (422)
55 KOG0641 WD40 repeat protein [G 100.0 1.9E-28 4.2E-33 205.7 29.3 292 138-480 31-349 (350)
56 KOG0645 WD40 repeat protein [G 100.0 6.2E-29 1.3E-33 214.2 26.8 239 194-481 18-262 (312)
57 PTZ00420 coronin; Provisional 100.0 1.6E-28 3.6E-33 246.1 33.6 229 215-483 50-296 (568)
58 KOG0318 WD40 repeat stress pro 100.0 1.9E-28 4.1E-33 228.9 30.4 311 124-483 44-395 (603)
59 KOG0316 Conserved WD40 repeat- 100.0 9.6E-30 2.1E-34 214.8 19.5 235 206-487 26-264 (307)
60 KOG0306 WD40-repeat-containing 100.0 4.4E-29 9.5E-34 242.0 25.4 287 136-484 370-668 (888)
61 KOG0282 mRNA splicing factor [ 100.0 4.3E-30 9.4E-35 237.8 16.9 253 194-491 218-473 (503)
62 KOG0299 U3 snoRNP-associated p 100.0 1.4E-29 3E-34 233.1 20.1 291 137-480 140-456 (479)
63 cd00200 WD40 WD40 domain, foun 100.0 5.2E-28 1.1E-32 228.4 31.0 247 194-490 13-259 (289)
64 KOG0275 Conserved WD40 repeat- 100.0 1.7E-29 3.7E-34 222.5 17.9 255 205-491 221-478 (508)
65 KOG0643 Translation initiation 100.0 2.2E-28 4.8E-33 210.3 23.1 235 206-481 19-318 (327)
66 KOG1407 WD40 repeat protein [F 100.0 2.5E-28 5.4E-33 209.4 23.2 249 194-491 24-272 (313)
67 KOG0274 Cdc4 and related F-box 100.0 2.6E-28 5.7E-33 243.8 26.4 287 138-492 207-494 (537)
68 PTZ00421 coronin; Provisional 100.0 2.7E-27 5.8E-32 236.4 33.2 248 194-482 79-333 (493)
69 KOG0313 Microtubule binding pr 100.0 2.8E-28 6.2E-33 219.3 22.4 241 209-491 115-388 (423)
70 KOG0269 WD40 repeat-containing 100.0 1.7E-28 3.7E-33 238.9 22.0 297 140-483 40-343 (839)
71 KOG0647 mRNA export protein (c 100.0 1.2E-27 2.6E-32 209.3 25.0 277 138-471 26-315 (347)
72 KOG0316 Conserved WD40 repeat- 100.0 8.9E-28 1.9E-32 203.0 22.6 280 136-479 14-298 (307)
73 KOG0269 WD40 repeat-containing 100.0 7E-29 1.5E-33 241.5 18.3 257 206-493 48-309 (839)
74 KOG0278 Serine/threonine kinas 100.0 9.4E-29 2E-33 210.6 16.0 287 135-485 10-302 (334)
75 KOG0268 Sof1-like rRNA process 100.0 1E-28 2.2E-33 220.8 15.5 293 129-485 57-350 (433)
76 KOG0288 WD40 repeat protein Ti 100.0 2.1E-28 4.6E-33 222.3 17.6 282 136-477 172-458 (459)
77 KOG0973 Histone transcription 100.0 1.3E-27 2.8E-32 241.8 25.0 314 138-483 12-358 (942)
78 KOG0296 Angio-associated migra 100.0 1.4E-27 3E-32 213.9 21.7 255 206-495 73-371 (399)
79 KOG1036 Mitotic spindle checkp 100.0 1.3E-26 2.8E-31 203.7 25.4 272 138-470 12-294 (323)
80 KOG1332 Vesicle coat complex C 100.0 3.4E-27 7.5E-32 200.5 20.5 242 208-481 22-287 (299)
81 KOG0274 Cdc4 and related F-box 100.0 4.9E-27 1.1E-31 234.7 23.8 235 209-491 218-452 (537)
82 KOG0294 WD40 repeat-containing 100.0 5.4E-26 1.2E-30 200.1 26.6 230 208-483 52-284 (362)
83 KOG1446 Histone H3 (Lys4) meth 100.0 2.8E-25 6.1E-30 196.3 30.6 282 139-483 14-306 (311)
84 KOG0772 Uncharacterized conser 100.0 8E-27 1.7E-31 217.4 21.9 254 206-491 176-456 (641)
85 KOG0308 Conserved WD40 repeat- 100.0 3.5E-27 7.6E-32 225.6 19.4 246 207-489 35-294 (735)
86 PTZ00420 coronin; Provisional 100.0 3E-25 6.6E-30 222.6 33.2 231 193-462 77-319 (568)
87 KOG1446 Histone H3 (Lys4) meth 100.0 4.8E-25 1E-29 194.8 30.3 245 206-491 23-273 (311)
88 KOG0301 Phospholipase A2-activ 99.9 6.1E-26 1.3E-30 218.7 25.7 279 136-482 11-290 (745)
89 KOG0307 Vesicle coat complex C 99.9 1.5E-27 3.2E-32 242.3 15.4 305 143-483 10-330 (1049)
90 KOG0647 mRNA export protein (c 99.9 6.3E-26 1.4E-30 198.6 22.2 243 205-487 35-288 (347)
91 KOG0293 WD40 repeat-containing 99.9 2.1E-26 4.6E-31 209.2 19.5 250 204-493 231-483 (519)
92 KOG0640 mRNA cleavage stimulat 99.9 2.8E-26 6.1E-31 201.2 19.4 289 137-480 110-426 (430)
93 KOG0289 mRNA splicing factor [ 99.9 2E-25 4.2E-30 204.2 25.3 283 140-479 220-505 (506)
94 KOG0640 mRNA cleavage stimulat 99.9 1E-26 2.2E-31 204.0 15.8 220 259-491 105-346 (430)
95 KOG0305 Anaphase promoting com 99.9 6.3E-26 1.4E-30 218.6 22.2 248 136-438 214-464 (484)
96 KOG0289 mRNA splicing factor [ 99.9 1.5E-25 3.2E-30 205.0 23.0 230 207-478 229-460 (506)
97 KOG0302 Ribosome Assembly prot 99.9 1.2E-25 2.6E-30 202.3 20.9 251 208-479 164-437 (440)
98 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.5E-31 211.0 14.4 245 206-493 184-430 (459)
99 KOG1407 WD40 repeat protein [F 99.9 1.6E-24 3.6E-29 186.0 26.3 276 136-471 17-293 (313)
100 KOG0639 Transducin-like enhanc 99.9 1.3E-25 2.8E-30 208.7 20.7 286 136-479 416-703 (705)
101 KOG0643 Translation initiation 99.9 6.1E-25 1.3E-29 189.2 22.9 226 261-495 5-235 (327)
102 KOG0299 U3 snoRNP-associated p 99.9 4.2E-25 9.2E-30 203.7 23.0 254 206-484 151-414 (479)
103 KOG0306 WD40-repeat-containing 99.9 9.9E-25 2.1E-29 212.0 26.4 243 206-494 382-636 (888)
104 KOG0310 Conserved WD40 repeat- 99.9 1.2E-25 2.5E-30 208.9 19.2 212 262-487 64-275 (487)
105 KOG0283 WD40 repeat-containing 99.9 1.4E-25 2.9E-30 221.8 20.8 217 264-495 265-547 (712)
106 KOG0646 WD40 repeat protein [G 99.9 2.2E-25 4.8E-30 205.9 20.2 280 152-479 51-349 (476)
107 KOG0300 WD40 repeat-containing 99.9 8.6E-25 1.9E-29 192.5 21.2 318 136-483 145-479 (481)
108 KOG0278 Serine/threonine kinas 99.9 8.7E-26 1.9E-30 192.5 13.7 245 136-439 56-301 (334)
109 KOG0641 WD40 repeat protein [G 99.9 1.7E-23 3.7E-28 176.0 25.6 249 204-481 39-304 (350)
110 KOG0973 Histone transcription 99.9 2.1E-24 4.6E-29 218.6 24.2 251 206-487 22-319 (942)
111 KOG2445 Nuclear pore complex c 99.9 7.7E-24 1.7E-28 186.0 24.4 245 206-480 22-318 (361)
112 KOG0300 WD40 repeat-containing 99.9 7.1E-25 1.5E-29 193.0 17.6 246 208-496 159-444 (481)
113 KOG0270 WD40 repeat-containing 99.9 4.6E-24 1E-28 196.1 23.3 242 151-439 192-453 (463)
114 KOG0302 Ribosome Assembly prot 99.9 1.6E-24 3.5E-29 195.0 19.7 220 256-483 141-381 (440)
115 KOG1036 Mitotic spindle checkp 99.9 6.1E-24 1.3E-28 186.9 22.5 240 205-490 21-272 (323)
116 KOG2055 WD40 repeat protein [G 99.9 6.1E-24 1.3E-28 196.0 23.1 293 139-480 213-512 (514)
117 KOG4283 Transcription-coupled 99.9 2.6E-24 5.7E-29 187.7 18.1 219 263-492 40-288 (397)
118 KOG0646 WD40 repeat protein [G 99.9 1.4E-23 3E-28 194.1 23.6 241 208-489 49-316 (476)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.6E-22 5.7E-27 192.0 32.8 278 152-489 2-288 (300)
120 KOG1408 WD40 repeat protein [F 99.9 1.8E-23 3.8E-28 202.0 24.0 318 142-483 327-716 (1080)
121 KOG0268 Sof1-like rRNA process 99.9 1.7E-24 3.6E-29 194.0 14.9 245 180-484 61-306 (433)
122 KOG1539 WD repeat protein [Gen 99.9 2.7E-23 5.8E-28 204.4 24.6 324 129-481 278-649 (910)
123 KOG4283 Transcription-coupled 99.9 2.1E-23 4.6E-28 182.1 21.1 217 208-438 55-279 (397)
124 KOG0308 Conserved WD40 repeat- 99.9 1.1E-23 2.4E-28 201.8 20.6 286 144-481 29-328 (735)
125 KOG1273 WD40 repeat protein [G 99.9 1.7E-23 3.6E-28 184.3 19.7 247 206-492 32-292 (405)
126 KOG0267 Microtubule severing p 99.9 4.6E-25 9.9E-30 213.6 10.4 222 207-471 38-259 (825)
127 KOG4378 Nuclear protein COP1 [ 99.9 3.2E-23 7E-28 192.6 21.4 281 153-488 5-288 (673)
128 KOG4328 WD40 protein [Function 99.9 4.8E-23 1E-27 190.0 22.1 266 191-492 187-462 (498)
129 KOG1408 WD40 repeat protein [F 99.9 1.1E-22 2.5E-27 196.5 24.8 307 146-496 265-687 (1080)
130 KOG1539 WD repeat protein [Gen 99.9 2.8E-22 6.2E-27 197.3 27.9 296 138-488 201-614 (910)
131 KOG0290 Conserved WD40 repeat- 99.9 1.6E-22 3.4E-27 176.4 22.9 300 141-476 46-361 (364)
132 KOG0267 Microtubule severing p 99.9 9.2E-25 2E-29 211.5 9.3 212 264-491 26-237 (825)
133 KOG1274 WD40 repeat protein [G 99.9 4E-22 8.6E-27 198.4 26.7 276 138-477 12-297 (933)
134 KOG2106 Uncharacterized conser 99.9 1.7E-21 3.7E-26 181.7 29.2 284 139-483 200-524 (626)
135 KOG0294 WD40 repeat-containing 99.9 3.8E-22 8.2E-27 176.0 23.5 261 136-457 40-305 (362)
136 KOG1332 Vesicle coat complex C 99.9 1.8E-22 3.9E-27 171.9 19.9 256 135-436 7-287 (299)
137 KOG0301 Phospholipase A2-activ 99.9 9.6E-23 2.1E-27 196.8 20.0 225 208-480 24-249 (745)
138 KOG4378 Nuclear protein COP1 [ 99.9 4.6E-22 9.9E-27 185.0 23.4 268 141-461 36-305 (673)
139 KOG2096 WD40 repeat protein [G 99.9 8.5E-22 1.8E-26 173.9 24.0 304 136-478 83-400 (420)
140 KOG1274 WD40 repeat protein [G 99.9 7.5E-22 1.6E-26 196.4 26.5 241 206-481 22-263 (933)
141 KOG1034 Transcriptional repres 99.9 1.2E-21 2.5E-26 173.8 22.8 305 135-480 34-383 (385)
142 KOG4328 WD40 protein [Function 99.9 1.9E-22 4.2E-27 186.0 18.3 208 263-480 183-399 (498)
143 KOG0321 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 187.0 22.3 247 194-483 104-394 (720)
144 KOG0321 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 187.3 21.5 255 207-488 62-355 (720)
145 KOG2445 Nuclear pore complex c 99.9 4E-21 8.7E-26 169.0 21.8 266 136-437 10-320 (361)
146 KOG2048 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 182.4 25.5 284 139-481 25-320 (691)
147 KOG2106 Uncharacterized conser 99.9 3.7E-20 7.9E-25 172.9 28.0 296 138-494 153-491 (626)
148 KOG0650 WD40 repeat nucleolar 99.9 3.9E-21 8.4E-26 182.8 21.5 312 136-477 397-732 (733)
149 KOG1587 Cytoplasmic dynein int 99.9 1.8E-20 4E-25 186.1 26.0 252 193-481 245-517 (555)
150 KOG0303 Actin-binding protein 99.9 1.2E-20 2.7E-25 171.1 22.5 220 261-493 76-307 (472)
151 KOG2919 Guanine nucleotide-bin 99.9 1.4E-20 3E-25 166.6 21.6 291 139-471 49-361 (406)
152 KOG1007 WD repeat protein TSSC 99.9 4.9E-20 1.1E-24 160.8 23.5 207 264-480 121-361 (370)
153 KOG0307 Vesicle coat complex C 99.9 2.7E-21 5.8E-26 197.1 16.5 250 140-438 65-330 (1049)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-19 3.5E-24 172.7 28.2 238 209-488 1-245 (300)
155 KOG2048 WD40 repeat protein [G 99.9 8.6E-20 1.9E-24 176.3 25.9 252 190-484 25-279 (691)
156 KOG1063 RNA polymerase II elon 99.9 6.7E-20 1.4E-24 177.3 24.6 300 136-487 264-657 (764)
157 KOG1188 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 168.1 18.2 195 209-437 40-244 (376)
158 KOG0290 Conserved WD40 repeat- 99.9 3.2E-20 6.9E-25 162.1 19.7 254 193-483 47-321 (364)
159 KOG1445 Tumor-specific antigen 99.9 4.4E-20 9.6E-25 176.6 22.1 129 352-485 627-755 (1012)
160 KOG1273 WD40 repeat protein [G 99.9 1.2E-19 2.7E-24 160.1 22.9 291 142-483 26-325 (405)
161 KOG0639 Transducin-like enhanc 99.9 1E-20 2.3E-25 176.3 16.5 250 128-434 454-703 (705)
162 KOG2055 WD40 repeat protein [G 99.9 4.9E-20 1.1E-24 170.4 20.0 239 206-483 222-470 (514)
163 KOG2919 Guanine nucleotide-bin 99.8 1.5E-19 3.4E-24 160.0 20.8 249 206-483 58-331 (406)
164 KOG1538 Uncharacterized conser 99.8 8.9E-20 1.9E-24 175.4 19.6 275 141-482 14-295 (1081)
165 KOG0642 Cell-cycle nuclear pro 99.8 4.5E-20 9.8E-25 174.8 15.8 259 205-495 302-576 (577)
166 KOG1007 WD repeat protein TSSC 99.8 9.4E-19 2E-23 152.8 21.9 269 137-435 61-361 (370)
167 KOG2096 WD40 repeat protein [G 99.8 6E-19 1.3E-23 156.0 19.6 207 259-480 79-308 (420)
168 KOG1009 Chromatin assembly com 99.8 1.4E-18 2.9E-23 158.6 22.1 308 139-485 13-377 (434)
169 KOG1517 Guanine nucleotide bin 99.8 2.2E-18 4.9E-23 173.8 25.7 304 142-483 1067-1384(1387)
170 KOG0650 WD40 repeat nucleolar 99.8 3.3E-19 7.2E-24 169.7 18.0 231 206-479 409-679 (733)
171 KOG1063 RNA polymerase II elon 99.8 3.8E-18 8.1E-23 165.3 24.0 290 142-480 319-699 (764)
172 KOG0303 Actin-binding protein 99.8 4.5E-18 9.7E-23 154.6 22.7 230 194-461 85-321 (472)
173 KOG1524 WD40 repeat-containing 99.8 3.3E-18 7.1E-23 161.0 20.7 275 138-481 13-287 (737)
174 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-16 2.3E-21 159.9 31.8 296 137-483 63-362 (466)
175 KOG1445 Tumor-specific antigen 99.8 2.6E-18 5.7E-23 164.5 18.1 256 207-496 589-860 (1012)
176 KOG1310 WD40 repeat protein [G 99.8 2.3E-18 4.9E-23 162.5 16.2 229 261-491 45-314 (758)
177 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-18 4.9E-23 163.4 15.0 265 137-448 292-572 (577)
178 KOG1188 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 150.5 17.4 198 280-486 41-248 (376)
179 KOG0649 WD40 repeat protein [G 99.8 6.8E-17 1.5E-21 138.0 22.0 243 206-481 19-275 (325)
180 KOG4227 WD40 repeat protein [G 99.8 4.5E-17 9.8E-22 147.8 20.6 294 136-481 53-388 (609)
181 KOG4227 WD40 repeat protein [G 99.8 4.7E-17 1E-21 147.7 19.6 244 205-482 64-324 (609)
182 KOG1587 Cytoplasmic dynein int 99.8 9.3E-17 2E-21 159.9 23.4 267 139-437 242-518 (555)
183 KOG1034 Transcriptional repres 99.8 3.5E-17 7.6E-22 145.6 17.7 217 264-485 87-342 (385)
184 PRK11028 6-phosphogluconolacto 99.8 2.2E-15 4.8E-20 146.1 32.2 242 206-481 43-305 (330)
185 KOG0322 G-protein beta subunit 99.8 2.5E-17 5.3E-22 142.3 16.0 290 128-479 5-322 (323)
186 KOG1963 WD40 repeat protein [G 99.8 8.9E-16 1.9E-20 153.3 28.2 307 142-492 163-550 (792)
187 KOG2110 Uncharacterized conser 99.8 9.8E-16 2.1E-20 138.7 25.7 230 206-483 14-251 (391)
188 KOG1009 Chromatin assembly com 99.8 6.5E-17 1.4E-21 147.7 18.2 255 209-487 26-336 (434)
189 KOG0644 Uncharacterized conser 99.7 7.2E-18 1.6E-22 166.3 12.2 237 205-486 198-474 (1113)
190 KOG0771 Prolactin regulatory e 99.7 4.2E-16 9E-21 143.5 22.7 204 270-483 148-357 (398)
191 COG2319 FOG: WD40 repeat [Gene 99.7 2.1E-15 4.6E-20 150.5 29.7 244 206-489 74-323 (466)
192 KOG1523 Actin-related protein 99.7 7.1E-16 1.5E-20 137.0 21.8 251 189-477 9-275 (361)
193 KOG0649 WD40 repeat protein [G 99.7 5.3E-15 1.1E-19 126.6 25.4 288 140-477 11-313 (325)
194 KOG1517 Guanine nucleotide bin 99.7 1E-15 2.2E-20 155.0 23.1 247 205-484 1072-1337(1387)
195 KOG1334 WD40 repeat protein [G 99.7 1.3E-16 2.8E-21 149.0 15.5 307 136-484 139-470 (559)
196 KOG1272 WD40-repeat-containing 99.7 2.2E-17 4.8E-22 153.1 9.5 226 204-479 136-361 (545)
197 KOG4497 Uncharacterized conser 99.7 2.9E-15 6.3E-20 133.5 21.7 291 145-489 14-400 (447)
198 KOG0644 Uncharacterized conser 99.7 2.3E-17 5E-22 162.8 8.5 225 257-490 181-436 (1113)
199 KOG1538 Uncharacterized conser 99.7 5.5E-16 1.2E-20 149.6 17.1 230 203-479 18-251 (1081)
200 KOG2139 WD40 repeat protein [G 99.7 5.2E-15 1.1E-19 133.5 21.3 242 206-488 107-391 (445)
201 KOG2139 WD40 repeat protein [G 99.7 5.5E-14 1.2E-18 127.0 27.7 306 140-480 99-431 (445)
202 KOG2111 Uncharacterized conser 99.7 2.8E-14 6E-19 126.9 25.4 180 289-484 75-260 (346)
203 KOG2394 WD40 protein DMR-N9 [G 99.7 3.4E-15 7.4E-20 141.1 20.3 232 141-414 125-384 (636)
204 KOG1310 WD40 repeat protein [G 99.7 5.9E-16 1.3E-20 146.4 15.0 221 180-439 45-307 (758)
205 KOG1272 WD40-repeat-containing 99.7 2.2E-16 4.8E-21 146.5 11.6 279 143-485 133-414 (545)
206 KOG1523 Actin-related protein 99.7 2.9E-15 6.2E-20 133.2 17.8 209 265-483 9-239 (361)
207 PRK11028 6-phosphogluconolacto 99.7 7.6E-14 1.6E-18 135.4 29.2 249 140-435 35-304 (330)
208 KOG3881 Uncharacterized conser 99.7 1.9E-14 4E-19 131.4 21.0 212 264-490 103-330 (412)
209 KOG1524 WD40 repeat-containing 99.7 3.5E-15 7.7E-20 140.8 16.9 183 279-482 75-257 (737)
210 PRK01742 tolB translocation pr 99.7 1.9E-14 4E-19 144.2 23.3 209 205-460 211-426 (429)
211 PRK01742 tolB translocation pr 99.7 2.4E-14 5.3E-19 143.4 23.8 204 263-489 200-412 (429)
212 KOG2321 WD40 repeat protein [G 99.6 3.5E-14 7.5E-19 135.4 22.5 286 136-481 48-344 (703)
213 KOG1240 Protein kinase contain 99.6 3.5E-14 7.5E-19 146.2 24.0 312 136-478 1045-1431(1431)
214 KOG2110 Uncharacterized conser 99.6 9.1E-13 2E-17 119.7 29.4 234 140-436 6-249 (391)
215 KOG1963 WD40 repeat protein [G 99.6 3E-13 6.4E-18 135.5 27.8 118 263-384 202-323 (792)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 5E-15 1.1E-19 140.0 14.1 205 145-362 179-384 (636)
217 KOG0771 Prolactin regulatory e 99.6 7E-15 1.5E-19 135.5 14.1 193 205-436 152-355 (398)
218 KOG1240 Protein kinase contain 99.6 4.1E-14 9E-19 145.7 20.7 224 256-491 1038-1284(1431)
219 KOG0309 Conserved WD40 repeat- 99.6 1.6E-14 3.4E-19 141.3 14.0 296 139-481 24-340 (1081)
220 PF10282 Lactonase: Lactonase, 99.6 7.7E-12 1.7E-16 121.6 30.1 278 164-480 13-322 (345)
221 PF08662 eIF2A: Eukaryotic tra 99.6 4E-13 8.7E-18 118.6 19.2 156 313-486 9-184 (194)
222 PRK03629 tolB translocation pr 99.6 3E-12 6.5E-17 128.0 27.6 206 264-489 196-414 (429)
223 KOG1354 Serine/threonine prote 99.6 8.6E-13 1.9E-17 118.6 20.9 296 138-485 24-364 (433)
224 PRK03629 tolB translocation pr 99.6 4.1E-12 9E-17 127.0 28.3 209 206-460 207-428 (429)
225 PRK02889 tolB translocation pr 99.6 1.7E-12 3.7E-17 129.9 25.3 200 264-479 193-402 (427)
226 PRK05137 tolB translocation pr 99.6 2.2E-12 4.8E-17 129.7 26.2 203 264-484 199-416 (435)
227 PF02239 Cytochrom_D1: Cytochr 99.6 1E-11 2.2E-16 120.7 29.9 253 205-489 44-356 (369)
228 KOG0322 G-protein beta subunit 99.5 3.2E-13 6.9E-18 117.1 16.6 159 264-434 148-322 (323)
229 PRK04922 tolB translocation pr 99.5 2.4E-12 5.1E-17 129.3 25.3 200 264-481 201-412 (433)
230 KOG3881 Uncharacterized conser 99.5 6.8E-13 1.5E-17 121.3 18.7 214 209-460 115-342 (412)
231 PRK04922 tolB translocation pr 99.5 4.9E-12 1.1E-16 127.0 26.5 211 203-459 209-432 (433)
232 KOG4497 Uncharacterized conser 99.5 5.2E-14 1.1E-18 125.6 10.5 232 205-487 16-247 (447)
233 KOG1334 WD40 repeat protein [G 99.5 2.8E-13 6E-18 127.0 15.5 257 205-492 150-436 (559)
234 KOG2321 WD40 repeat protein [G 99.5 1.3E-12 2.8E-17 124.9 20.1 242 206-488 60-310 (703)
235 KOG0280 Uncharacterized conser 99.5 1.1E-11 2.4E-16 109.4 24.1 244 208-483 83-336 (339)
236 KOG2111 Uncharacterized conser 99.5 1.8E-10 3.9E-15 103.0 28.5 234 142-436 8-257 (346)
237 KOG0280 Uncharacterized conser 99.5 2E-12 4.3E-17 114.0 15.7 207 193-436 124-334 (339)
238 PRK05137 tolB translocation pr 99.5 2.7E-11 5.9E-16 121.8 26.3 208 206-460 210-433 (435)
239 PRK02889 tolB translocation pr 99.5 2.6E-11 5.5E-16 121.4 25.0 211 205-460 203-425 (427)
240 KOG4547 WD40 repeat-containing 99.4 1.3E-11 2.9E-16 118.8 20.6 189 278-481 4-221 (541)
241 PF08662 eIF2A: Eukaryotic tra 99.4 1.1E-11 2.3E-16 109.5 18.6 152 270-437 9-181 (194)
242 KOG2315 Predicted translation 99.4 4.9E-11 1.1E-15 114.2 23.5 288 141-490 75-400 (566)
243 TIGR02800 propeller_TolB tol-p 99.4 9.9E-11 2.2E-15 117.6 25.6 199 264-480 187-397 (417)
244 KOG1409 Uncharacterized conser 99.4 3.8E-11 8.2E-16 108.2 19.3 250 135-436 20-271 (404)
245 PRK04792 tolB translocation pr 99.4 2.3E-10 5E-15 115.0 26.5 206 264-487 215-431 (448)
246 COG5354 Uncharacterized protei 99.4 4.8E-10 1E-14 106.2 26.2 308 138-483 31-398 (561)
247 PRK00178 tolB translocation pr 99.4 2.6E-10 5.7E-15 114.8 26.6 200 264-481 196-407 (430)
248 PF10282 Lactonase: Lactonase, 99.4 1.5E-09 3.3E-14 105.5 30.5 286 141-457 38-345 (345)
249 PRK01029 tolB translocation pr 99.4 5.4E-10 1.2E-14 111.4 27.5 206 266-484 184-407 (428)
250 PF02239 Cytochrom_D1: Cytochr 99.4 3E-10 6.4E-15 110.4 24.4 196 280-487 6-209 (369)
251 KOG4547 WD40 repeat-containing 99.3 2.7E-10 5.9E-15 109.9 22.7 194 206-436 2-221 (541)
252 TIGR02800 propeller_TolB tol-p 99.3 5.2E-10 1.1E-14 112.4 25.7 190 204-436 196-398 (417)
253 COG2706 3-carboxymuconate cycl 99.3 1.5E-08 3.3E-13 92.8 32.0 279 165-484 17-325 (346)
254 PRK04792 tolB translocation pr 99.3 1.3E-09 2.8E-14 109.6 27.0 213 204-460 224-447 (448)
255 PRK00178 tolB translocation pr 99.3 1.4E-09 3E-14 109.5 27.3 211 205-460 206-428 (430)
256 KOG0974 WD-repeat protein WDR6 99.3 9.6E-10 2.1E-14 112.6 25.3 202 140-385 88-290 (967)
257 KOG0974 WD-repeat protein WDR6 99.3 3.5E-10 7.6E-15 115.8 21.3 192 272-482 93-290 (967)
258 PRK01029 tolB translocation pr 99.3 2.9E-09 6.2E-14 106.3 26.7 181 268-461 232-426 (428)
259 PLN02919 haloacid dehalogenase 99.3 7.3E-09 1.6E-13 113.7 31.5 260 208-484 579-892 (1057)
260 KOG1064 RAVE (regulator of V-A 99.3 2.1E-11 4.5E-16 130.3 11.2 201 264-492 2206-2410(2439)
261 KOG2314 Translation initiation 99.2 3.6E-09 7.9E-14 101.3 22.7 290 141-483 251-576 (698)
262 KOG4714 Nucleoporin [Nuclear s 99.2 1.6E-10 3.4E-15 100.5 12.1 148 279-436 101-255 (319)
263 KOG2041 WD40 repeat protein [G 99.2 2E-09 4.4E-14 105.8 20.7 233 194-462 18-321 (1189)
264 KOG2315 Predicted translation 99.2 8.6E-09 1.9E-13 99.1 24.3 284 141-488 36-352 (566)
265 KOG4532 WD40-like repeat conta 99.2 5.6E-09 1.2E-13 91.4 20.9 238 208-481 83-332 (344)
266 PF04762 IKI3: IKI3 family; I 99.2 1.3E-08 2.7E-13 109.8 28.3 314 138-482 74-458 (928)
267 KOG1409 Uncharacterized conser 99.2 3E-09 6.6E-14 96.2 18.5 235 207-483 34-273 (404)
268 TIGR02658 TTQ_MADH_Hv methylam 99.2 1E-07 2.2E-12 90.8 30.0 249 206-488 54-338 (352)
269 COG2706 3-carboxymuconate cycl 99.2 2.8E-07 6E-12 84.7 31.1 290 137-458 37-345 (346)
270 COG5170 CDC55 Serine/threonine 99.2 1.2E-09 2.6E-14 97.4 15.4 242 206-479 35-366 (460)
271 KOG1354 Serine/threonine prote 99.1 1.1E-09 2.3E-14 99.0 13.9 206 265-481 24-302 (433)
272 KOG4190 Uncharacterized conser 99.1 1.1E-10 2.4E-15 111.2 6.6 210 260-485 729-953 (1034)
273 KOG0309 Conserved WD40 repeat- 99.1 5.3E-10 1.1E-14 110.2 11.1 220 206-462 33-258 (1081)
274 KOG4532 WD40-like repeat conta 99.1 2.4E-08 5.3E-13 87.4 20.0 202 280-490 85-292 (344)
275 KOG1064 RAVE (regulator of V-A 99.1 1.3E-09 2.7E-14 117.1 13.2 187 139-385 2208-2400(2439)
276 KOG2314 Translation initiation 99.1 5E-08 1.1E-12 93.7 22.5 282 142-481 213-526 (698)
277 PF15492 Nbas_N: Neuroblastoma 99.0 6.1E-07 1.3E-11 80.1 26.1 237 145-438 3-262 (282)
278 PRK04043 tolB translocation pr 99.0 3.5E-07 7.5E-12 90.8 27.7 196 268-481 189-401 (419)
279 KOG1912 WD40 repeat protein [G 99.0 9.3E-08 2E-12 95.3 21.7 241 206-481 24-305 (1062)
280 COG5170 CDC55 Serine/threonine 99.0 1.5E-08 3.3E-13 90.5 14.7 274 138-434 25-366 (460)
281 PF15492 Nbas_N: Neuroblastoma 99.0 1E-06 2.3E-11 78.6 26.2 195 268-487 45-266 (282)
282 KOG1912 WD40 repeat protein [G 99.0 1.7E-07 3.7E-12 93.5 23.1 300 138-485 14-369 (1062)
283 PLN02919 haloacid dehalogenase 99.0 6.9E-07 1.5E-11 98.4 30.3 168 269-439 685-892 (1057)
284 KOG3914 WD repeat protein WDR4 99.0 4.6E-08 1E-12 90.6 17.5 162 141-346 64-229 (390)
285 PF04762 IKI3: IKI3 family; I 99.0 4.1E-06 9E-11 90.7 34.8 304 138-483 208-567 (928)
286 KOG1645 RING-finger-containing 98.9 2.5E-08 5.3E-13 92.2 14.5 220 261-491 188-430 (463)
287 COG4946 Uncharacterized protei 98.9 9.6E-07 2.1E-11 83.5 24.4 175 274-467 327-506 (668)
288 KOG2695 WD40 repeat protein [G 98.9 7.5E-09 1.6E-13 93.7 9.5 171 316-495 218-391 (425)
289 COG4946 Uncharacterized protei 98.9 2.8E-06 6.1E-11 80.5 26.5 198 146-386 273-480 (668)
290 KOG0882 Cyclophilin-related pe 98.9 3.3E-08 7.1E-13 92.6 13.4 250 208-487 19-312 (558)
291 PF08450 SGL: SMP-30/Gluconola 98.9 7.6E-06 1.6E-10 75.7 28.9 220 208-469 11-245 (246)
292 KOG1275 PAB-dependent poly(A) 98.8 8.3E-08 1.8E-12 97.4 15.4 186 208-433 146-340 (1118)
293 TIGR03300 assembly_YfgL outer 98.8 7E-06 1.5E-10 81.2 29.3 228 208-489 104-347 (377)
294 KOG3914 WD repeat protein WDR4 98.8 8.3E-08 1.8E-12 88.9 14.0 160 314-487 67-230 (390)
295 KOG4714 Nucleoporin [Nuclear s 98.8 1.8E-08 3.9E-13 87.9 9.1 199 269-481 39-255 (319)
296 KOG0882 Cyclophilin-related pe 98.8 2.8E-08 6E-13 93.1 10.8 212 264-488 7-239 (558)
297 KOG2695 WD40 repeat protein [G 98.8 1.4E-08 3E-13 92.0 8.4 176 273-458 218-401 (425)
298 PRK04043 tolB translocation pr 98.8 4.9E-06 1.1E-10 82.7 26.3 192 204-438 194-403 (419)
299 TIGR03300 assembly_YfgL outer 98.8 7.1E-06 1.5E-10 81.2 27.7 259 150-477 104-376 (377)
300 KOG1008 Uncharacterized conser 98.8 5.8E-09 1.3E-13 101.7 4.7 245 194-479 60-334 (783)
301 KOG2041 WD40 repeat protein [G 98.8 1.4E-07 3E-12 93.2 13.7 199 266-479 14-246 (1189)
302 TIGR02658 TTQ_MADH_Hv methylam 98.7 4.4E-05 9.6E-10 73.0 28.9 242 146-439 52-334 (352)
303 KOG1275 PAB-dependent poly(A) 98.7 4.9E-07 1.1E-11 92.0 16.0 183 279-479 147-341 (1118)
304 KOG4190 Uncharacterized conser 98.7 1.4E-07 3.1E-12 90.5 11.3 232 207-478 745-986 (1034)
305 COG5354 Uncharacterized protei 98.7 5.7E-06 1.2E-10 79.2 20.9 233 203-482 38-308 (561)
306 KOG2066 Vacuolar assembly/sort 98.7 1.2E-06 2.6E-11 88.2 17.2 186 265-480 38-233 (846)
307 PF08450 SGL: SMP-30/Gluconola 98.6 5.4E-05 1.2E-09 70.0 25.6 198 271-488 4-220 (246)
308 PF11768 DUF3312: Protein of u 98.6 0.0001 2.2E-09 72.7 28.0 113 268-385 207-331 (545)
309 KOG1008 Uncharacterized conser 98.6 1.5E-08 3.2E-13 99.0 1.7 203 266-481 56-276 (783)
310 KOG1832 HIV-1 Vpr-binding prot 98.6 2.7E-08 5.9E-13 100.3 3.5 203 257-488 1092-1299(1516)
311 PF00400 WD40: WD domain, G-be 98.5 2.7E-07 5.8E-12 58.1 6.0 39 299-338 1-39 (39)
312 KOG1920 IkappaB kinase complex 98.5 2.5E-05 5.4E-10 82.5 23.2 286 138-479 67-364 (1265)
313 KOG1832 HIV-1 Vpr-binding prot 98.5 6.2E-08 1.3E-12 97.8 3.8 199 206-462 1110-1314(1516)
314 KOG1645 RING-finger-containing 98.5 7.5E-07 1.6E-11 82.7 10.4 167 291-470 175-351 (463)
315 KOG2114 Vacuolar assembly/sort 98.5 1.3E-05 2.8E-10 81.6 19.3 199 268-481 27-244 (933)
316 PF13360 PQQ_2: PQQ-like domai 98.5 5.3E-05 1.1E-09 69.6 22.5 182 280-486 37-236 (238)
317 KOG2114 Vacuolar assembly/sort 98.5 1.5E-05 3.2E-10 81.1 19.5 193 206-439 32-247 (933)
318 KOG2066 Vacuolar assembly/sort 98.5 2.2E-05 4.9E-10 79.3 20.7 181 208-436 48-234 (846)
319 KOG3617 WD40 and TPR repeat-co 98.4 5.8E-06 1.3E-10 83.6 15.4 104 206-340 24-131 (1416)
320 PF00400 WD40: WD domain, G-be 98.4 7.3E-07 1.6E-11 56.0 5.7 38 395-433 2-39 (39)
321 PF07433 DUF1513: Protein of u 98.4 7.9E-05 1.7E-09 68.8 21.0 206 269-487 7-254 (305)
322 PF11768 DUF3312: Protein of u 98.4 2.9E-05 6.3E-10 76.4 17.5 132 351-494 204-343 (545)
323 PF06977 SdiA-regulated: SdiA- 98.3 0.00021 4.5E-09 65.1 21.5 202 264-477 19-247 (248)
324 PRK11138 outer membrane biogen 98.3 0.00067 1.5E-08 67.5 27.2 223 209-479 160-393 (394)
325 PF07433 DUF1513: Protein of u 98.3 0.00067 1.4E-08 62.8 24.3 226 206-470 13-276 (305)
326 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00061 1.3E-08 60.3 22.5 102 209-340 63-165 (354)
327 PRK11138 outer membrane biogen 98.3 0.001 2.3E-08 66.1 27.2 229 208-488 119-361 (394)
328 KOG3617 WD40 and TPR repeat-co 98.3 5.9E-05 1.3E-09 76.7 17.6 112 143-297 19-131 (1416)
329 KOG3621 WD40 repeat-containing 98.2 0.00023 5E-09 71.3 20.5 161 140-341 34-198 (726)
330 COG0823 TolB Periplasmic compo 98.2 0.00011 2.3E-09 72.8 17.3 204 266-483 192-403 (425)
331 KOG1920 IkappaB kinase complex 98.2 0.00027 5.9E-09 75.0 20.8 202 266-483 68-325 (1265)
332 PRK02888 nitrous-oxide reducta 98.2 0.00061 1.3E-08 69.0 22.2 257 212-481 69-405 (635)
333 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00088 1.9E-08 65.5 23.1 272 139-471 42-349 (353)
334 PF06433 Me-amine-dh_H: Methyl 98.1 0.004 8.8E-08 58.5 24.3 247 206-489 44-329 (342)
335 COG0823 TolB Periplasmic compo 98.0 0.00041 8.9E-09 68.7 18.4 179 291-484 175-362 (425)
336 PF08553 VID27: VID27 cytoplas 98.0 0.0006 1.3E-08 71.6 19.6 143 279-434 493-646 (794)
337 PF13360 PQQ_2: PQQ-like domai 98.0 0.0017 3.7E-08 59.5 20.1 184 208-438 35-233 (238)
338 KOG3621 WD40 repeat-containing 97.9 0.00019 4.2E-09 71.8 13.8 154 273-438 40-200 (726)
339 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0028 6E-08 56.3 19.2 147 275-435 19-165 (354)
340 COG3391 Uncharacterized conser 97.9 0.0052 1.1E-07 60.6 23.4 212 268-487 75-290 (381)
341 PF04053 Coatomer_WDAD: Coatom 97.8 0.0061 1.3E-07 60.7 22.9 232 188-481 30-263 (443)
342 PF08596 Lgl_C: Lethal giant l 97.8 0.0024 5.3E-08 62.6 19.5 213 268-488 3-298 (395)
343 PF08553 VID27: VID27 cytoplas 97.8 0.00053 1.2E-08 71.9 15.7 144 323-480 494-647 (794)
344 PF04841 Vps16_N: Vps16, N-ter 97.8 0.011 2.4E-07 58.8 24.3 174 267-462 81-272 (410)
345 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.0096 2.1E-07 58.4 22.8 89 397-488 300-406 (415)
346 PRK02888 nitrous-oxide reducta 97.8 0.0056 1.2E-07 62.2 21.7 159 274-436 200-405 (635)
347 PF02897 Peptidase_S9_N: Proly 97.8 0.033 7.1E-07 55.9 27.7 254 141-442 125-411 (414)
348 cd00216 PQQ_DH Dehydrogenases 97.8 0.021 4.6E-07 58.4 26.4 233 210-488 111-432 (488)
349 PF00780 CNH: CNH domain; Int 97.8 0.015 3.1E-07 54.8 23.5 238 208-491 6-266 (275)
350 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0013 2.7E-08 51.0 12.7 102 269-378 2-109 (111)
351 PF04841 Vps16_N: Vps16, N-ter 97.7 0.011 2.3E-07 58.9 22.2 180 290-485 62-251 (410)
352 PF08596 Lgl_C: Lethal giant l 97.7 0.0037 8E-08 61.4 18.7 252 206-469 10-325 (395)
353 KOG2395 Protein involved in va 97.7 0.0032 6.9E-08 61.4 17.2 145 323-481 347-501 (644)
354 PF06433 Me-amine-dh_H: Methyl 97.7 0.038 8.1E-07 52.1 23.8 251 142-439 38-324 (342)
355 PF14583 Pectate_lyase22: Olig 97.7 0.059 1.3E-06 51.8 30.1 178 290-480 169-381 (386)
356 COG3391 Uncharacterized conser 97.7 0.016 3.6E-07 57.1 22.9 208 268-487 32-246 (381)
357 PF04053 Coatomer_WDAD: Coatom 97.7 0.017 3.6E-07 57.7 22.6 217 141-435 34-262 (443)
358 KOG4640 Anaphase-promoting com 97.6 0.00026 5.6E-09 70.1 9.2 95 265-362 19-115 (665)
359 PF06977 SdiA-regulated: SdiA- 97.6 0.021 4.5E-07 52.2 20.8 202 140-380 22-247 (248)
360 PF03178 CPSF_A: CPSF A subuni 97.6 0.011 2.4E-07 57.0 20.1 161 264-432 86-262 (321)
361 KOG2444 WD40 repeat protein [G 97.6 0.00012 2.5E-09 63.7 5.5 147 323-483 31-180 (238)
362 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.031 6.8E-07 54.6 23.1 201 266-480 42-313 (353)
363 KOG1897 Damage-specific DNA bi 97.5 0.12 2.6E-06 54.6 27.0 299 137-492 528-868 (1096)
364 KOG2444 WD40 repeat protein [G 97.5 0.0002 4.3E-09 62.3 5.3 107 208-341 69-178 (238)
365 KOG2079 Vacuolar assembly/sort 97.4 0.0044 9.6E-08 65.4 15.1 102 208-339 98-202 (1206)
366 PF03178 CPSF_A: CPSF A subuni 97.4 0.017 3.8E-07 55.6 18.4 175 289-481 2-203 (321)
367 COG3386 Gluconolactonase [Carb 97.3 0.15 3.2E-06 48.4 24.6 194 267-471 66-277 (307)
368 KOG4441 Proteins containing BT 97.3 0.019 4E-07 59.6 18.8 194 269-483 325-549 (571)
369 smart00320 WD40 WD40 repeats. 97.3 0.00073 1.6E-08 41.0 5.5 39 299-338 2-40 (40)
370 PF02897 Peptidase_S9_N: Proly 97.3 0.14 3.1E-06 51.3 24.8 205 267-480 124-357 (414)
371 KOG2395 Protein involved in va 97.3 0.011 2.3E-07 57.9 14.8 141 281-435 348-500 (644)
372 KOG4640 Anaphase-promoting com 97.3 0.0018 3.8E-08 64.4 9.6 96 351-459 19-115 (665)
373 PHA02713 hypothetical protein; 97.2 0.022 4.8E-07 59.1 17.9 186 279-483 304-536 (557)
374 smart00320 WD40 WD40 repeats. 97.1 0.0015 3.2E-08 39.6 4.9 38 395-433 3-40 (40)
375 COG3204 Uncharacterized protei 97.0 0.25 5.5E-06 45.3 20.4 171 264-437 83-265 (316)
376 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.049 1.1E-06 42.3 13.6 103 355-476 2-110 (111)
377 cd00216 PQQ_DH Dehydrogenases 97.0 0.11 2.4E-06 53.2 20.3 193 281-487 63-326 (488)
378 PF14583 Pectate_lyase22: Olig 97.0 0.4 8.8E-06 46.3 22.3 197 271-484 85-332 (386)
379 KOG2247 WD40 repeat-containing 96.9 0.00022 4.7E-09 68.6 -0.1 210 265-492 33-292 (615)
380 PHA02713 hypothetical protein; 96.9 0.07 1.5E-06 55.5 18.2 147 279-441 352-539 (557)
381 PF05694 SBP56: 56kDa selenium 96.9 0.14 3E-06 49.9 18.4 185 276-469 139-393 (461)
382 KOG3630 Nuclear pore complex, 96.8 0.015 3.2E-07 61.9 12.2 99 265-365 154-256 (1405)
383 KOG3630 Nuclear pore complex, 96.8 0.015 3.3E-07 61.9 12.1 147 311-468 102-262 (1405)
384 PF00780 CNH: CNH domain; Int 96.8 0.45 9.8E-06 44.6 21.5 150 279-443 7-173 (275)
385 PF05694 SBP56: 56kDa selenium 96.8 0.32 6.9E-06 47.4 19.9 117 268-385 182-344 (461)
386 PF15390 DUF4613: Domain of un 96.6 0.15 3.4E-06 51.0 17.0 156 265-437 18-188 (671)
387 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 1.1 2.4E-05 46.3 29.7 25 464-488 474-498 (527)
388 KOG2079 Vacuolar assembly/sort 96.6 0.011 2.4E-07 62.6 9.1 102 367-480 101-203 (1206)
389 COG3386 Gluconolactonase [Carb 96.5 0.69 1.5E-05 43.9 20.1 199 272-489 30-251 (307)
390 KOG4441 Proteins containing BT 96.5 0.36 7.8E-06 50.2 19.7 147 279-439 381-550 (571)
391 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.1 2.3E-05 44.5 25.6 152 208-384 36-205 (418)
392 PRK13616 lipoprotein LpqB; Pro 96.4 0.31 6.8E-06 50.8 18.9 191 267-474 350-562 (591)
393 PF10168 Nup88: Nuclear pore c 96.4 0.97 2.1E-05 48.2 22.5 80 265-346 83-185 (717)
394 PRK13616 lipoprotein LpqB; Pro 96.3 0.37 8.1E-06 50.2 18.6 174 288-480 328-525 (591)
395 PF15390 DUF4613: Domain of un 96.3 0.22 4.7E-06 50.0 15.6 159 310-483 20-189 (671)
396 PF12894 Apc4_WD40: Anaphase-p 96.3 0.019 4.2E-07 37.2 5.8 35 449-485 11-45 (47)
397 COG3204 Uncharacterized protei 96.3 0.24 5.2E-06 45.4 14.7 205 273-482 49-265 (316)
398 KOG1897 Damage-specific DNA bi 96.3 2.1 4.6E-05 45.8 27.2 175 290-480 751-942 (1096)
399 PHA03098 kelch-like protein; P 96.2 0.16 3.4E-06 52.9 15.7 186 280-483 296-514 (534)
400 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.4 8.6E-06 47.3 17.2 52 267-319 57-118 (415)
401 PRK10115 protease 2; Provision 96.1 2.3 4.9E-05 45.6 24.0 199 267-480 127-344 (686)
402 KOG4499 Ca2+-binding protein R 96.1 0.41 9E-06 42.3 14.6 154 139-328 108-272 (310)
403 PF12894 Apc4_WD40: Anaphase-p 96.0 0.023 4.9E-07 36.8 5.0 35 265-301 10-44 (47)
404 PF07995 GSDH: Glucose / Sorbo 95.9 1.8 3.8E-05 41.9 26.0 79 395-475 244-330 (331)
405 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.8 2.7 5.9E-05 43.4 29.7 56 290-345 272-338 (527)
406 PHA03098 kelch-like protein; P 95.8 0.45 9.7E-06 49.5 16.6 158 279-452 343-528 (534)
407 PF10168 Nup88: Nuclear pore c 95.7 3.1 6.8E-05 44.4 22.4 36 264-299 144-181 (717)
408 PF10446 DUF2457: Protein of u 95.6 0.0047 1E-07 59.1 1.1 18 6-26 14-31 (458)
409 COG3490 Uncharacterized protei 95.5 1.1 2.4E-05 41.0 15.3 142 311-462 69-238 (366)
410 PHA02790 Kelch-like protein; P 95.5 0.47 1E-05 48.5 15.2 183 279-483 272-473 (480)
411 COG5167 VID27 Protein involved 95.4 0.78 1.7E-05 45.3 15.0 142 279-435 479-632 (776)
412 TIGR03074 PQQ_membr_DH membran 95.2 5.6 0.00012 42.9 23.4 196 280-487 195-484 (764)
413 PF10647 Gmad1: Lipoprotein Lp 95.2 2.6 5.7E-05 38.9 21.0 161 268-431 25-192 (253)
414 PRK10115 protease 2; Provision 95.1 5.9 0.00013 42.5 29.8 249 141-439 128-398 (686)
415 KOG2280 Vacuolar assembly/sort 95.0 1.5 3.3E-05 45.5 16.4 176 268-460 85-270 (829)
416 COG3490 Uncharacterized protei 94.9 3 6.5E-05 38.3 18.6 207 269-487 70-317 (366)
417 KOG1916 Nuclear protein, conta 94.8 0.048 1E-06 56.9 5.6 169 139-345 132-328 (1283)
418 PF10647 Gmad1: Lipoprotein Lp 94.8 3.4 7.4E-05 38.1 18.9 156 311-476 25-192 (253)
419 PF05096 Glu_cyclase_2: Glutam 94.7 3.4 7.4E-05 37.9 20.6 184 267-468 45-249 (264)
420 KOG1916 Nuclear protein, conta 94.7 0.003 6.5E-08 65.3 -3.3 164 269-436 186-375 (1283)
421 PF10313 DUF2415: Uncharacteri 94.5 0.17 3.7E-06 31.8 5.3 34 450-483 1-36 (43)
422 COG5167 VID27 Protein involved 94.4 1.2 2.5E-05 44.1 13.3 142 324-481 482-633 (776)
423 PF10214 Rrn6: RNA polymerase 94.3 5.4 0.00012 43.4 20.0 135 350-486 77-238 (765)
424 PF14727 PHTB1_N: PTHB1 N-term 94.1 6.8 0.00015 38.9 32.2 294 151-487 37-367 (418)
425 PF12234 Rav1p_C: RAVE protein 93.8 2.4 5.3E-05 44.0 15.3 121 310-435 30-156 (631)
426 COG4590 ABC-type uncharacteriz 93.8 0.54 1.2E-05 45.6 9.7 169 302-483 213-389 (733)
427 KOG4499 Ca2+-binding protein R 93.7 4.8 0.0001 35.9 19.8 149 310-469 109-274 (310)
428 PF08728 CRT10: CRT10; InterP 93.7 4 8.6E-05 43.0 16.7 113 268-382 102-245 (717)
429 KOG2247 WD40 repeat-containing 93.4 0.011 2.4E-07 57.4 -2.1 136 206-373 43-178 (615)
430 PF14870 PSII_BNR: Photosynthe 93.4 4.1 8.9E-05 38.5 14.9 151 265-432 143-301 (302)
431 PF12768 Rax2: Cortical protei 93.3 7 0.00015 36.5 16.7 96 289-385 16-125 (281)
432 PF05096 Glu_cyclase_2: Glutam 93.3 6.5 0.00014 36.1 15.9 168 300-486 34-209 (264)
433 COG5276 Uncharacterized conser 93.1 7.2 0.00016 36.1 22.6 167 309-495 86-255 (370)
434 PF10446 DUF2457: Protein of u 93.1 0.035 7.6E-07 53.3 0.8 12 207-218 190-201 (458)
435 PF10313 DUF2415: Uncharacteri 93.0 0.44 9.5E-06 29.9 5.3 33 267-299 1-35 (43)
436 PHA02790 Kelch-like protein; P 93.0 7.6 0.00017 39.7 17.6 58 279-342 363-425 (480)
437 PF08728 CRT10: CRT10; InterP 93.0 5.6 0.00012 42.0 16.3 105 323-434 115-245 (717)
438 KOG4460 Nuclear pore complex, 92.7 3.9 8.5E-05 40.8 13.8 83 405-489 104-207 (741)
439 TIGR03118 PEPCTERM_chp_1 conse 92.5 9.1 0.0002 35.7 22.0 219 268-490 24-289 (336)
440 KOG2280 Vacuolar assembly/sort 92.3 6.8 0.00015 40.9 15.5 181 287-487 62-253 (829)
441 PF03022 MRJP: Major royal jel 92.2 10 0.00022 35.7 19.0 176 290-468 35-253 (287)
442 PF12234 Rav1p_C: RAVE protein 92.2 5.8 0.00013 41.4 15.3 101 367-480 43-156 (631)
443 PLN02153 epithiospecifier prot 92.1 6.9 0.00015 38.0 15.5 55 427-483 217-287 (341)
444 PF02333 Phytase: Phytase; In 92.0 13 0.00028 36.3 21.4 198 279-483 68-293 (381)
445 PF14870 PSII_BNR: Photosynthe 91.7 12 0.00027 35.4 24.6 160 306-477 141-301 (302)
446 TIGR02604 Piru_Ver_Nterm putat 91.5 11 0.00023 37.1 16.1 149 310-469 14-202 (367)
447 COG5276 Uncharacterized conser 91.4 12 0.00026 34.7 22.7 153 266-438 86-244 (370)
448 TIGR03548 mutarot_permut cycli 91.4 14 0.0003 35.5 17.1 23 418-440 173-199 (323)
449 PF07569 Hira: TUP1-like enhan 91.3 2.9 6.2E-05 37.6 10.8 86 349-439 9-99 (219)
450 PLN00033 photosystem II stabil 91.3 17 0.00036 36.1 18.0 152 312-477 241-396 (398)
451 PRK14131 N-acetylneuraminic ac 91.3 16 0.00035 36.0 19.4 50 429-481 314-369 (376)
452 PF14781 BBS2_N: Ciliary BBSom 90.9 7.5 0.00016 31.5 13.3 120 357-485 3-130 (136)
453 TIGR03547 muta_rot_YjhT mutatr 90.8 17 0.00036 35.3 18.7 41 428-471 291-331 (346)
454 PLN02153 epithiospecifier prot 90.6 17 0.00037 35.2 20.1 23 279-301 86-113 (341)
455 PLN02193 nitrile-specifier pro 90.3 9.1 0.0002 39.1 14.7 64 418-483 330-413 (470)
456 PF11715 Nup160: Nucleoporin N 90.0 1.6 3.5E-05 45.5 9.3 96 207-306 156-257 (547)
457 PF14781 BBS2_N: Ciliary BBSom 89.9 9.2 0.0002 31.0 12.4 110 272-385 4-127 (136)
458 KOG2377 Uncharacterized conser 89.6 6.8 0.00015 38.4 12.0 124 350-483 64-188 (657)
459 COG4257 Vgb Streptogramin lyas 89.4 17 0.00037 33.4 16.4 198 267-481 62-263 (353)
460 PF07676 PD40: WD40-like Beta 89.4 1.9 4.2E-05 26.3 5.8 31 447-477 6-38 (39)
461 KOG1900 Nuclear pore complex, 89.3 9.5 0.00021 42.5 14.1 151 328-485 95-277 (1311)
462 PF10214 Rrn6: RNA polymerase 89.2 38 0.00082 37.0 25.5 120 353-481 146-277 (765)
463 TIGR03548 mutarot_permut cycli 88.7 14 0.00031 35.4 14.2 102 279-385 73-196 (323)
464 PF11635 Med16: Mediator compl 88.5 27 0.00059 38.0 17.3 69 265-335 258-345 (753)
465 PF12657 TFIIIC_delta: Transcr 88.3 4.2 9.1E-05 35.0 9.1 31 267-297 86-121 (173)
466 PF07569 Hira: TUP1-like enhan 88.3 3 6.5E-05 37.5 8.5 79 207-300 20-98 (219)
467 PF04931 DNA_pol_phi: DNA poly 88.2 0.24 5.3E-06 53.8 1.7 15 21-36 619-633 (784)
468 KOG3616 Selective LIM binding 88.1 11 0.00024 39.4 12.9 34 138-174 13-46 (1636)
469 PLN02193 nitrile-specifier pro 87.9 34 0.00074 34.9 19.0 102 279-385 229-353 (470)
470 PF10395 Utp8: Utp8 family; I 86.7 45 0.00098 35.1 23.4 167 309-489 129-314 (670)
471 TIGR02604 Piru_Ver_Nterm putat 86.7 34 0.00073 33.6 22.5 59 267-329 72-142 (367)
472 PF12657 TFIIIC_delta: Transcr 86.4 6.4 0.00014 33.9 9.2 32 353-384 86-122 (173)
473 TIGR03118 PEPCTERM_chp_1 conse 86.1 30 0.00065 32.4 22.8 225 203-459 28-307 (336)
474 KOG1983 Tomosyn and related SN 86.0 17 0.00036 40.7 14.1 32 266-298 35-66 (993)
475 smart00036 CNH Domain found in 85.9 32 0.0007 32.7 25.1 242 209-489 13-279 (302)
476 TIGR03074 PQQ_membr_DH membran 85.4 60 0.0013 35.3 21.7 64 280-345 261-349 (764)
477 PF14761 HPS3_N: Hermansky-Pud 84.7 28 0.00061 30.9 13.6 101 281-385 30-165 (215)
478 PF10433 MMS1_N: Mono-function 84.6 52 0.0011 33.9 25.4 107 364-478 221-340 (504)
479 KOG2377 Uncharacterized conser 84.4 45 0.00098 33.0 20.5 116 265-384 65-186 (657)
480 COG3823 Glutamine cyclotransfe 84.3 28 0.00062 30.6 15.0 103 279-385 56-160 (262)
481 KOG1983 Tomosyn and related SN 84.3 22 0.00048 39.8 14.1 25 413-438 243-267 (993)
482 KOG4460 Nuclear pore complex, 84.2 19 0.00041 36.2 11.9 97 265-385 102-200 (741)
483 TIGR02276 beta_rpt_yvtn 40-res 83.5 5.4 0.00012 24.5 5.7 32 276-307 1-32 (42)
484 KOG1900 Nuclear pore complex, 83.4 36 0.00079 38.3 14.7 148 286-436 96-273 (1311)
485 KOG1896 mRNA cleavage and poly 83.2 51 0.0011 36.8 15.5 170 192-383 1027-1213(1366)
486 PF14779 BBS1: Ciliary BBSome 83.1 38 0.00082 31.1 17.4 73 404-477 176-255 (257)
487 PF07995 GSDH: Glucose / Sorbo 82.9 47 0.001 32.1 19.0 57 367-430 273-330 (331)
488 KOG2727 Rab3 GTPase-activating 82.1 3.7 7.9E-05 43.7 6.5 77 406-487 323-413 (1244)
489 PF02333 Phytase: Phytase; In 81.3 57 0.0012 32.0 21.7 196 207-437 66-292 (381)
490 KOG2063 Vacuolar assembly/sort 81.3 47 0.001 36.3 14.5 76 208-301 25-100 (877)
491 TIGR03547 muta_rot_YjhT mutatr 81.1 55 0.0012 31.7 15.1 20 323-342 65-95 (346)
492 PRK14131 N-acetylneuraminic ac 81.1 30 0.00064 34.1 12.6 20 323-342 86-116 (376)
493 COG4880 Secreted protein conta 81.0 59 0.0013 31.9 15.9 183 291-487 408-599 (603)
494 KOG3616 Selective LIM binding 79.9 26 0.00056 36.8 11.4 69 309-382 14-82 (1636)
495 PF08801 Nucleoporin_N: Nup133 79.4 35 0.00076 34.2 12.7 31 450-481 190-220 (422)
496 KOG1898 Splicing factor 3b, su 78.2 1.2E+02 0.0025 33.7 18.0 174 291-480 855-1048(1205)
497 COG4257 Vgb Streptogramin lyas 77.1 62 0.0013 29.9 19.4 209 203-462 67-288 (353)
498 PF07676 PD40: WD40-like Beta 77.0 12 0.00026 22.6 5.5 32 401-432 5-38 (39)
499 PF14761 HPS3_N: Hermansky-Pud 76.9 54 0.0012 29.1 11.7 106 367-484 30-167 (215)
500 PRK13684 Ycf48-like protein; P 76.4 76 0.0017 30.6 16.2 154 266-433 172-329 (334)
No 1
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-83 Score=581.39 Aligned_cols=458 Identities=44% Similarity=0.778 Sum_probs=390.5
Q ss_pred CcceeeeccCCCCccCCcccCCCCHHHHHHHHHccccccccccCCCCCchhhhhhhhhhhccchhHHHHHHHhhcCCCcc
Q 010769 1 MIAAVSWVPKGASKAVPEEAEPPSKEEIEEIINSGALEHEIEDDRSEDDDEDMEVEDEAKQSDDASQAVAVANALGKTSK 80 (502)
Q Consensus 1 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (502)
||||++|||||+||++|+||+| +++|++|||. +++ +..+ +++.+ .+.++ +++.+++.++..-
T Consensus 3 ~Vsa~swvprG~ake~Pdk~~l-~~~e~~rii~------~e~-~~~~-~ee~~---~e~~~------~~~~a~~~~~~~l 64 (463)
T KOG0270|consen 3 MVSALSWVPRGVAKEFPDKIEL-DDEELKRIIQ------LEG-AIAD-DEESE---SESDD------AEESAEEQGKGML 64 (463)
T ss_pred eeeeeeeeeccchhhCCccccC-CHHHHHHHhh------hcc-cccc-ccccc---cccch------hhhhhhhhccccc
Confidence 8999999999999999999999 9999999875 111 2222 11111 00000 0011111111111
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCc-ccccccCcccceeccCCCCCCcccCCCC-CCccccccccccCCCceEEEEE
Q 010769 81 SKNSGTKFDDITDGLKELDMDHYDDEDD-GVEIFGKGLGDLYYASNQMDPYLKDKDD-EDSEDLEDMTINPNDAVIVCAR 158 (502)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~e~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~ 158 (502)
+...+.+.+..+..|+||+|++||+|.+ .+.+|.++.++.+|.+++.|||++++++ +.+++...+.+.|++++|+||.
T Consensus 65 ~~~~d~d~~~~~~~l~e~d~d~ydee~~g~~~~f~s~~g~~~y~sne~DPYvt~~d~e~deee~de~~V~psDnlIl~ar 144 (463)
T KOG0270|consen 65 DSSGDVDDDLKEYELKEYDMDEYDEEADGEIELFSSLLGIAVYPSNEKDPYVTIPDDEDDEEEKDEEQVKPSDNLILCAR 144 (463)
T ss_pred ccccccCccchhhhhhhhccccchhcccccccccccccCceeccCCCCCCccccCCcccchhhcccceeccCCcEEEEee
Confidence 1112234445566899999999999864 5889999999999999999999999764 4556689999999999999999
Q ss_pred ecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeee
Q 010769 159 NEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVIL 238 (502)
Q Consensus 159 ~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l 238 (502)
.++++++|+||+|+.... ++|+||+.++|+||+|++|+++.......|+|+|+|++++.|.|||++..+.+.|..+|
T Consensus 145 ~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L 221 (463)
T KOG0270|consen 145 NEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL 221 (463)
T ss_pred ccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceee
Confidence 999999999999999987 99999999999999999999995555556999999999999999999999999999999
Q ss_pred CCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc
Q 010769 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN 318 (502)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~ 318 (502)
|.....++ ++..+......+|+++|.+|+|+...+++|||||.|.+|++||+.++++..++..|..+|+++.|+
T Consensus 222 Gs~~sk~~------~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 222 GSKASKKK------KKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH 295 (463)
T ss_pred chhhhhhh------hhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec
Confidence 96544222 222224445668999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769 319 HHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398 (502)
Q Consensus 319 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 398 (502)
|..+.+|++|+.|++|.+.|+|........|...+.|..++|+|+.++.|++++.||+|+-+|+|+. .++++
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vw 367 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVW 367 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCcee
Confidence 9999999999999999999999888888899999999999999999999999999999999999998 68999
Q ss_pred EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
++.+|..+|++|++++..+++|+|++.|+.|++|++....+..+.......+...|+++.|+-.++||.||..+.++|||
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEee
Confidence 99999999999999999999999999999999999998887777777666778999999999999999999999999999
Q ss_pred CCCCccccccccCCC
Q 010769 479 TLSDAGISNRFSKYS 493 (502)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (502)
+.++..+++.|+.+.
T Consensus 448 ~~~~~~V~kaF~~~~ 462 (463)
T KOG0270|consen 448 IFTNSPVRKAFGSRL 462 (463)
T ss_pred cccChhHHHhhcccc
Confidence 999999999998764
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-46 Score=335.08 Aligned_cols=301 Identities=26% Similarity=0.384 Sum_probs=263.3
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|.+.|-+++|+|++..||+|+.+. ++++|..+.... ......|..-+ +|++| +|||+.||+|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~---TvR~WD~~TeTp-~~t~KgH~~WV-----lcvaw-------sPDgk~iASG 175 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDT---TVRLWDLDTETP-LFTCKGHKNWV-----LCVAW-------SPDGKKIASG 175 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCc---eEEeeccCCCCc-ceeecCCccEE-----EEEEE-------CCCcchhhcc
Confidence 56999999999999999999999875 778898887764 11223444444 79999 8999999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC----CcEEEEEecCCcE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF----RNILASASADKQV 291 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~sgs~Dg~v 291 (502)
+.+|+|++||..+++... ..+.+|...|++|+|.|-+ ..+||++|.||+|
T Consensus 176 ~~dg~I~lwdpktg~~~g--------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIG--------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred ccCCeEEEecCCCCCccc--------------------------ccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence 999999999987654432 3566999999999998742 3489999999999
Q ss_pred EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeC----------
Q 010769 292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD---------- 361 (502)
Q Consensus 292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~---------- 361 (502)
+|||+..++++..+.+|+.+|+|++|--+| ++++|+.|++|++|+...+.....+.+|...|+.++.+
T Consensus 230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred EEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 999999999999999999999999998776 99999999999999999988888888999999988876
Q ss_pred -CCCC------------------------CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 362 -PHAE------------------------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 362 -p~~~------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
|.+. ..+++|+.|.++.+|+-... .+++..+.+|..-|+.+.|+|++
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--------kkpi~rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--------KKPITRMTGHQALVNHVSFSPDG 379 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--------ccchhhhhchhhheeeEEECCCc
Confidence 2222 25999999999999998876 47899999999999999999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 417 PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
+++|++|.|++|++|+.++++ .+.++.+|.++|+.++|+.|.+ ||++|+.|.+++||++++.+....+.+|.
T Consensus 380 -r~IASaSFDkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 380 -RYIASASFDKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred -cEEEEeecccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence 999999999999999999998 6888999999999999999999 79999999999999999998887776654
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.7e-43 Score=318.07 Aligned_cols=286 Identities=20% Similarity=0.297 Sum_probs=253.8
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
..+..|..+.|+++++.||+|+.+| .++||..... .....|+.|...+ .++.|.+.. ++..||+|+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG---~~kvW~~~~~-~~~~~l~gH~~~v-----~~~~fhP~~-----~~~~lat~s 238 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSG---LVKVWSVPQC-NLLQTLRGHTSRV-----GAAVFHPVD-----SDLNLATAS 238 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCC---ceeEeecCCc-ceeEEEeccccce-----eeEEEccCC-----Cccceeeec
Confidence 3456899999999999999999998 5688877665 3344566666544 577774220 377899999
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
.||++++|+++.. .+...+.+|...|..++|+|+ +.+|+|+|.|.+-++||+
T Consensus 239 ~Dgtvklw~~~~e---------------------------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE---------------------------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDL 290 (459)
T ss_pred cCCceeeeccCCC---------------------------cchhhhhcchhhheeeeecCC-Cceeeecccccchhhccc
Confidence 9999999999753 333356689999999999999 569999999999999999
Q ss_pred CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 376 (502)
.++..+....+|+..|.+++|+++| .+++||+.|..-+|||+|+++++..+.+|..+|..|.|+|+| +.+++|+.|++
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt 368 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNT 368 (459)
T ss_pred ccchhhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCc
Confidence 9999988889999999999999999 999999999999999999999999888999999999999976 58999999999
Q ss_pred EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
++|||+|.. ..+..+.+|..-|+.+.|+|..+.+|+|++.|++++||...+.. ++.++.+|.+.|.++.
T Consensus 369 ~kVWDLR~r---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 369 CKVWDLRMR---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLD 437 (459)
T ss_pred EEEeeeccc---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEE
Confidence 999999987 67999999999999999999666999999999999999999887 6889999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEE
Q 010769 457 FSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 457 ~spd~~~llasg~~dg~i~vwd 478 (502)
.+|++.+ +++++.|.++++|.
T Consensus 438 is~d~~~-i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQA-IATSSFDRTIKLWR 458 (459)
T ss_pred eccCCce-EEEeccCceeeecc
Confidence 9999995 99999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-41 Score=305.31 Aligned_cols=290 Identities=23% Similarity=0.334 Sum_probs=249.7
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|...|.+++|+|+|+.||+|+.++ .+.+|.-..+...-..|..|...+ .+++|-+... .|..++||++
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg---~I~lwdpktg~~~g~~l~gH~K~I-----t~Lawep~hl--~p~~r~las~ 223 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDG---SIRLWDPKTGQQIGRALRGHKKWI-----TALAWEPLHL--VPPCRRLASS 223 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCC---eEEEecCCCCCcccccccCcccce-----eEEeeccccc--CCCccceecc
Confidence 56999999999999999999999998 344444334443334555666544 6899976644 5778899999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.||.|+|||+..+ .....+.+|+.+|+|+.|--+ .+|+|||.|++|++|+
T Consensus 224 skDg~vrIWd~~~~---------------------------~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLG---------------------------TCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWR 274 (480)
T ss_pred cCCCCEEEEEccCc---------------------------eEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEE
Confidence 99999999999753 334456799999999999755 4999999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEc-----------CCC------------------------CcEEEEEECCCcEEEEeCC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWN-----------HHS------------------------PQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~-----------~~~------------------------~~~l~s~~~dg~i~vwd~~ 340 (502)
...|++.+.+++|...|+.|+.+ |.+ +..|++|+.|.++.+|+..
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 99999999999999999999887 222 2359999999999999986
Q ss_pred CCC-CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769 341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 341 ~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
..+ ++....+|..-|+.+.|+|++. ++++++.|..|++|+.+++ +.+.++.+|-.+|..++|+.+. ++
T Consensus 355 ~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaDs-RL 423 (480)
T KOG0271|consen 355 KSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSADS-RL 423 (480)
T ss_pred ccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccCc-cE
Confidence 554 5556778999999999999876 8999999999999999998 8889999999999999999997 99
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
|++||.|.++++|++++.+ +...+.+|...|+++.|+|||. .+++|+.|..+++|.
T Consensus 424 lVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 9999999999999999987 6788899999999999999999 699999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=309.05 Aligned_cols=249 Identities=23% Similarity=0.315 Sum_probs=231.4
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s 284 (502)
+.+++.||||+.+|.++||+.... .....+.+|+..|.++.|+|. ....|||
T Consensus 184 S~ds~~laT~swsG~~kvW~~~~~---------------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 184 SRDSKHLATGSWSGLVKVWSVPQC---------------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred ecCCCeEEEeecCCceeEeecCCc---------------------------ceeEEEeccccceeeEEEccCCCccceee
Confidence 789999999999999999998753 233456799999999999998 4668999
Q ss_pred EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~ 364 (502)
|+.||+|++|++.+..++..+.+|...|..++|||+| ++|+|+++|.+-++||+++........+|...|.+++|+|+|
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence 9999999999999999999999999999999999999 999999999999999999999888889999999999999998
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. ++++|+.|..-++||+|++ .++..+.+|..+|.+++|+|+| ..|||||.|++++|||++..+ .+..
T Consensus 316 S-L~~tGGlD~~~RvWDlRtg---------r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~--~ly~ 382 (459)
T KOG0272|consen 316 S-LAATGGLDSLGRVWDLRTG---------RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS--ELYT 382 (459)
T ss_pred c-eeeccCccchhheeecccC---------cEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc--ccee
Confidence 7 8999999999999999998 8899999999999999999998 999999999999999999887 5888
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
+.+|..-|+.+.|+|...+.|+|++.|++++||...+..+++.+.+|..+.
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV 433 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKV 433 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccce
Confidence 999999999999999666679999999999999999999999998886653
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=282.07 Aligned_cols=292 Identities=19% Similarity=0.325 Sum_probs=247.3
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|...|.++.|+++.+.|++++.++ ++.+|+.-.. ....++|+...|+- ..+|+|.|+++|+|
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~Tt----------nK~haipl~s~WVM-tCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTT----------NKVHAIPLPSSWVM-TCAYSPSGNFVACG 115 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCC-----eEEEEEcccc----------cceeEEecCceeEE-EEEECCCCCeEEec
Confidence 35889999999999999999999998 5556654332 11234456667752 35669999999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.|+...||++.+.+.. ........+.+|++-+.|+.|.++ +.|+++|.|.+..+||
T Consensus 116 GLdN~Csiy~ls~~d~~---------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAE---------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWD 172 (343)
T ss_pred CcCceeEEEeccccccc---------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEE
Confidence 99999999999753211 112334456799999999999987 3788999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 375 (502)
+++++.+..|.+|.+.|.+|.++|..++.|++|+.|+..++||+|.+...+.+.+|.+.|++|+|.|+|. -|++|+.|+
T Consensus 173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~ 251 (343)
T KOG0286|consen 173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDA 251 (343)
T ss_pred cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCc
Confidence 9999999999999999999999995559999999999999999999999998999999999999999876 799999999
Q ss_pred eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
+.++||+|.... ..++.-..-..+|++++||..| ++|.+|..|.++.+||.-.++ .+..+.+|...|.++
T Consensus 252 tcRlyDlRaD~~-------~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 252 TCRLYDLRADQE-------LAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCL 321 (343)
T ss_pred eeEEEeecCCcE-------EeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEE
Confidence 999999998731 2233333445789999999998 999999999999999998877 566778999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEE
Q 010769 456 AFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 456 ~~spd~~~llasg~~dg~i~vwd 478 (502)
..+|||. .|++|+.|.+++||.
T Consensus 322 ~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCc-EEEecchhHheeecC
Confidence 9999998 699999999999994
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-37 Score=286.14 Aligned_cols=299 Identities=23% Similarity=0.410 Sum_probs=255.8
Q ss_pred CccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCC-CC-------CceeeeeccccCCCcceeeeecCCCCCCCC
Q 010769 138 DSEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDG-GD-------PNLYVHHHIIIPAFPLCMAWLDCPLKDREK 208 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~-~~-------~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~ 208 (502)
|+.+|.+.+|+|-.. +|++|+.+- ..++|.+..... .. ..-+..+..+...-.+|++| +.+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s---~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W-------n~~ 246 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDS---TARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW-------NND 246 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCcc---ceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe-------cCC
Confidence 888999999999988 777777553 568887765221 00 11112233334445689999 788
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
|++||+|+.+|.+|||+.+ ......+..|.++|.+|.|+.. +++|++++.|
T Consensus 247 G~~LatG~~~G~~riw~~~----------------------------G~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD 297 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKD----------------------------GNLISTLGQHKGPIFSLKWNKK-GTYILSGGVD 297 (524)
T ss_pred CCeEEEeecCcEEEEEecC----------------------------chhhhhhhccCCceEEEEEcCC-CCEEEeccCC
Confidence 9999999999999999986 3344466689999999999999 6799999999
Q ss_pred CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 368 (502)
+++.+||..++.+.+.|..|+.+-..+.|-.+. -|++++.|+.|+|+.+....+...+.+|.+.|.++.|+|.+. +|
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LL 374 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LL 374 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eE
Confidence 999999999999999999999988889997664 799999999999999998888888889999999999999876 89
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC--------CEEEEEeCCCcEEEEECCCCCee
Q 010769 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP--------NLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~--------~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
++++.|++++||..... .....+.+|...|..+.|+|.++ ..+++++.|++|++||+..+.
T Consensus 375 aS~SdD~TlkiWs~~~~---------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-- 443 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQS---------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-- 443 (524)
T ss_pred EEecCCCeeEeeecCCC---------cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc--
Confidence 99999999999998876 77888999999999999999763 589999999999999999988
Q ss_pred EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 441 ~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
++..+..|..+|.+++|+|+|+| +|+|+.||.|.+|++.+++.++..-+
T Consensus 444 ~i~~f~kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 444 PIHTLMKHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred eeEeeccCCCceEEEEecCCCcE-EEecCCCCeeEeccccchheeEeecC
Confidence 67889899999999999999996 99999999999999999998776543
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.3e-39 Score=288.87 Aligned_cols=285 Identities=22% Similarity=0.389 Sum_probs=242.6
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d 218 (502)
.-.|..+.|.|+|+.|++|+..|.+ .+|.-..-. .+..++ -|+.++ .++.| +++|.++++|..+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEF---tLWNg~~fn-FEtilQ-aHDs~V----r~m~w-------s~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEF---TLWNGTSFN-FETILQ-AHDSPV----RTMKW-------SHNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccE---EEecCceee-HHHHhh-hhcccc----eeEEE-------ccCCCEEEEcCCC
Confidence 4578999999999999999999854 555431110 011233 344333 68888 7899999999999
Q ss_pred CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~ 298 (502)
|.|++|+.+-. ........|..+|++++|+|+ ...+++||.||+|+|||...
T Consensus 160 G~iKyWqpnmn---------------------------nVk~~~ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 160 GMIKYWQPNMN---------------------------NVKIIQAHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred ceEEecccchh---------------------------hhHHhhHhhhhhhheeccCCC-CceeEEecCCCeEEEEeccC
Confidence 99999998631 111122345699999999998 66999999999999999999
Q ss_pred CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 378 (502)
.+....+.+|.-.|.+++|||.. .++++|+.|..|++||.+++.++.....|...|..+.|+|++ ++|++++.|..++
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~k 289 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCK 289 (464)
T ss_pred CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEE
Confidence 99888899999999999999998 899999999999999999999999899999999999999988 6999999999999
Q ss_pred EEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+||+|+. +-++.+.+|...|+++.|+|-.+.+|++|+.||.|..|.+....+. ...-.+|.+.|++++|+
T Consensus 290 v~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-~~i~~AHd~~iwsl~~h 359 (464)
T KOG0284|consen 290 VFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-GEIPPAHDGEIWSLAYH 359 (464)
T ss_pred EEehhHh---------HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-cCCCcccccceeeeecc
Confidence 9999975 7788999999999999999998899999999999999999865543 33346789999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECC
Q 010769 459 EDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 459 pd~~~llasg~~dg~i~vwd~~ 480 (502)
|=|. +|++|+.|.++++|.-.
T Consensus 360 PlGh-il~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 360 PLGH-ILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccce-eEeecCCCcceeeeccC
Confidence 9997 89999999999999753
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.6e-38 Score=305.36 Aligned_cols=264 Identities=22% Similarity=0.423 Sum_probs=223.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCC--CCCceeeeCCcchh--hhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVID--EVQPHVILGGIDEE--KKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~--~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
++++.+||.|..|..|++|.+.... .+....-+...... .................+.||.++|..++|+|+ +++
T Consensus 387 SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd-~rf 465 (707)
T KOG0263|consen 387 SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD-RRF 465 (707)
T ss_pred cCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc-ccc
Confidence 8899999999999999999997421 11110000000000 000001112223334457899999999999999 779
Q ss_pred EEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeC
Q 010769 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 361 (502)
Q Consensus 282 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~ 361 (502)
|++||.|++||+|.+.+..++..+++|..+|+.+.|+|.| .+|+|++.|++.++|......+.+.+.+|-+.|.|+.|+
T Consensus 466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FH 544 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH 544 (707)
T ss_pred eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcccccccceEEEC
Confidence 9999999999999999999999999999999999999999 999999999999999999888888888999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
|+. +++++|+.|.+|++||+.++ ..++.+.+|.++|++++|+|+| ++|++|+.||.|++||+.+++ .
T Consensus 545 PNs-~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~--~ 611 (707)
T KOG0263|consen 545 PNS-NYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS--L 611 (707)
T ss_pred Ccc-cccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc--c
Confidence 975 48999999999999999998 7789999999999999999998 999999999999999999988 5
Q ss_pred EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
+..+.+|.+.|.++.|+.+|. +||+||.|.+|++||+..-...
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred hhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhccc
Confidence 778888999999999999999 7999999999999999764443
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=257.92 Aligned_cols=291 Identities=17% Similarity=0.246 Sum_probs=236.0
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCC
Q 010769 152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 231 (502)
Q Consensus 152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~ 231 (502)
-+|++++.+. ++++|....+.. ..-..|.+..+ ..++- .|++++||+|+. ..||+||+++...
T Consensus 11 viLvsA~YDh---TIRfWqa~tG~C--~rTiqh~dsqV----NrLei-------Tpdk~~LAaa~~-qhvRlyD~~S~np 73 (311)
T KOG0315|consen 11 VILVSAGYDH---TIRFWQALTGIC--SRTIQHPDSQV----NRLEI-------TPDKKDLAAAGN-QHVRLYDLNSNNP 73 (311)
T ss_pred eEEEeccCcc---eeeeeehhcCeE--EEEEecCccce----eeEEE-------cCCcchhhhccC-CeeEEEEccCCCC
Confidence 3677777775 556665554432 11123333222 22222 789999999975 7999999986432
Q ss_pred CCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCC
Q 010769 232 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK 311 (502)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~ 311 (502)
.+...+.+|+..|+.+.|..+ +..+++||.||+++|||++...+.+.++ |..+
T Consensus 74 -------------------------~Pv~t~e~h~kNVtaVgF~~d-grWMyTgseDgt~kIWdlR~~~~qR~~~-~~sp 126 (311)
T KOG0315|consen 74 -------------------------NPVATFEGHTKNVTAVGFQCD-GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSP 126 (311)
T ss_pred -------------------------CceeEEeccCCceEEEEEeec-CeEEEecCCCceEEEEeccCcccchhcc-CCCC
Confidence 244466789999999999999 5699999999999999999988877776 7799
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 010769 312 VQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 390 (502)
Q Consensus 312 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 390 (502)
|+++..+|+. .-|++|..+|.|++||++...+..... .....|.++...|+|. .++++...|+.++|++-+......
T Consensus 127 Vn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 127 VNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred cceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCcccc
Confidence 9999999998 789999999999999999876654333 2346799999999887 788899999999999987432221
Q ss_pred CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769 391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~ 470 (502)
..|+..+++|.+.+..+.+||++ ++|||+|.|.+++||+..+. ......+.+|...++.++||.+|.| |++|+.
T Consensus 205 ---l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~Y-lvTass 278 (311)
T KOG0315|consen 205 ---LEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEY-LVTASS 278 (311)
T ss_pred ---ceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccE-EEecCC
Confidence 47788899999999999999998 99999999999999999988 4567788899999999999999997 889999
Q ss_pred CCcEEEEECCCCccccccccCCCC
Q 010769 471 KGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 471 dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
|+.+++|++..++.++..-+|+..
T Consensus 279 d~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred CCceeecccccCceeeecCCcccc
Confidence 999999999999999888877654
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=256.11 Aligned_cols=254 Identities=22% Similarity=0.340 Sum_probs=228.2
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
+|+.| ++++++|++++.||.+.|||.-+.+.+..+ .-....|..++
T Consensus 59 ~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~hai---------------------------pl~s~WVMtCA 104 (343)
T KOG0286|consen 59 YAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAI---------------------------PLPSSWVMTCA 104 (343)
T ss_pred eeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEE---------------------------ecCceeEEEEE
Confidence 68888 799999999999999999998764433322 23457899999
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCC------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAG------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 347 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 347 (502)
|+|. ++++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|-+++ .|+|++.|.++.+||+.+++....
T Consensus 105 ~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 105 YSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred ECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEE
Confidence 9999 679999999999999999865 4567789999999999999865 799999999999999999999888
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
+.+|.+.|.++.++|...+.|++|+.|+..++||+|.+ .+++++.+|.+.|++++|.|+| .-++||+.|+
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---------~c~qtF~ghesDINsv~ffP~G-~afatGSDD~ 251 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---------QCVQTFEGHESDINSVRFFPSG-DAFATGSDDA 251 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---------ceeEeecccccccceEEEccCC-CeeeecCCCc
Confidence 88999999999999966779999999999999999997 8899999999999999999998 9999999999
Q ss_pred cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
+.++||++..+...++.......+|++++||..|+ +|.+|..|.++.+||...++.+..+.+|.+..
T Consensus 252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv 318 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRV 318 (343)
T ss_pred eeEEEeecCCcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCee
Confidence 99999999998777777777788999999999999 57788999999999999999999888887643
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-35 Score=251.23 Aligned_cols=288 Identities=20% Similarity=0.341 Sum_probs=222.4
Q ss_pred CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCC----CCceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769 136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGG----DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~ 210 (502)
+.|.++|..+++.+.+ ..|+.++.+. .+-+|.+...... ...+.+|...+ ..+. .+++|+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk---~ii~W~L~~dd~~~G~~~r~~~GHsH~v-----~dv~-------~s~dg~ 76 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDK---TIIVWKLTSDDIKYGVPVRRLTGHSHFV-----SDVV-------LSSDGN 76 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccce---EEEEEEeccCccccCceeeeeeccceEe-----cceE-------EccCCc
Confidence 3588999999999985 5666777665 5666766554321 11233433222 1111 178999
Q ss_pred EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
+.++++.|+++|+||+.++ .....+.+|+..|++++|+++ ...++|||.|.+
T Consensus 77 ~alS~swD~~lrlWDl~~g---------------------------~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkT 128 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATG---------------------------ESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKT 128 (315)
T ss_pred eEEeccccceEEEEEecCC---------------------------cEEEEEEecCCceEEEEecCC-CceeecCCCcce
Confidence 9999999999999999864 233356699999999999999 458999999999
Q ss_pred EEEEECCCCeeeEEeccC--CCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769 291 VKIWDVAAGKCNLTLEHH--TDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 367 (502)
|++|++.. .+..++..+ ++.|+|++|+|.. ..+|++++.|++|++||+++.+......+|.+.++.+.++|+|. +
T Consensus 129 iklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-l 206 (315)
T KOG0279|consen 129 IKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-L 206 (315)
T ss_pred eeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-E
Confidence 99999764 455555333 7899999999984 47899999999999999999999888889999999999999987 8
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-
Q 010769 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN- 446 (502)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~- 446 (502)
.++|+.||.+.+||++.. +.++.+. |...|.+++|+|+. +.+++..+..|+|||+.+..........
T Consensus 207 casGgkdg~~~LwdL~~~---------k~lysl~-a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEG---------KNLYSLE-AFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EecCCCCceEEEEEccCC---------ceeEecc-CCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhhccccc
Confidence 999999999999999987 5555554 78899999999964 4444445566999999987632111111
Q ss_pred ------CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 447 ------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 447 ------~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
...-...+++|+++|. .|.+|-.|+.|++|.+..
T Consensus 275 ~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence 1122367899999999 488899999999999853
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=263.41 Aligned_cols=287 Identities=22% Similarity=0.401 Sum_probs=253.3
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|...|..+.|+|+-.++++++.+. ++++|.+..++. ...|.+|.+.+ ..+.+ +..|++||++
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~---tikv~D~~tg~~-e~~LrGHt~sv-----~di~~-------~a~Gk~l~tc 168 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDA---TIKVFDTETGEL-ERSLRGHTDSV-----FDISF-------DASGKYLATC 168 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCc---eEEEEEccchhh-hhhhhccccce-----eEEEE-------ecCccEEEec
Confidence 45888999999999999999998775 678887776654 45666776542 33333 6679999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.|-.+.+||++.. ......+.+|...|.++.|-|. +.+++|++.|.+|+.|+
T Consensus 169 SsDl~~~LWd~~~~--------------------------~~c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTF--------------------------FRCIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAWE 221 (406)
T ss_pred CCccchhheeHHHH--------------------------HHHHHHhcCcccceeeEEEEec-CCeeeecccccceeEEe
Confidence 99988999998631 2233345689999999999999 57999999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC------------
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH------------ 363 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~------------ 363 (502)
+.++-++.+|.+|+..|..++.+.+| .++++++.|.+|++|-+.+.++......|..+|.|++|.|.
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 99999999999999999999999999 99999999999999999999888888899999999999873
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769 364 --AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 364 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
+..++++++.|++|++||+.++ .+++++.+|...|..++|+|.| ++|+++..|+++++||+++.+ |
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg---------~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~--c 368 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTG---------MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQ--C 368 (406)
T ss_pred CCCccEEEeecccceEEEEeccCC---------eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccce--e
Confidence 2248999999999999999997 8999999999999999999988 999999999999999999988 8
Q ss_pred EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
......|...|+++.|+.+.+| +++|+-|.++++|..
T Consensus 369 mk~~~ah~hfvt~lDfh~~~p~-VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 369 MKTLEAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWEC 405 (406)
T ss_pred eeccCCCcceeEEEecCCCCce-EEeccccceeeeeec
Confidence 8888999999999999999996 999999999999974
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-34 Score=277.66 Aligned_cols=291 Identities=23% Similarity=0.387 Sum_probs=235.7
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccC-CCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP-AFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~w~~~~~~~s~~~~~la~g~~d 218 (502)
..|.+..|||.-++||+|-..+ ..+.|+-. .+..-|...+. .....+.| +..|.+||.|+..
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG-----~f~LyelP-----~f~lih~LSis~~~I~t~~~-------N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSG-----EFGLYELP-----DFNLIHSLSISDQKILTVSF-------NSTGDWIAFGCSK 328 (893)
T ss_pred cceeeeeccCCceEEEEEecCC-----eeEEEecC-----CceEEEEeecccceeeEEEe-------cccCCEEEEcCCc
Confidence 5799999999999999999888 44444433 23333433343 33344444 5679999999876
Q ss_pred -CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
|.+-||+..+. ......++|...+++++++|+ +.++|+|+.||.|+|||..
T Consensus 329 lgQLlVweWqsE---------------------------sYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 329 LGQLLVWEWQSE---------------------------SYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred cceEEEEEeecc---------------------------ceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEecc
Confidence 89999999752 233345689999999999999 5699999999999999999
Q ss_pred CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeCCC-
Q 010769 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLEDG- 375 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg- 375 (502)
++-|..+|..|++.|+.++|+..+ +.+++++.||+|+.||+...+....+. +.+-...|++..|.|. ++++|+.|.
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F 458 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSF 458 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceE
Confidence 999999999999999999999999 999999999999999998766544222 3344578899999876 677777665
Q ss_pred eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
.|.+|+++++ +.+-.+.+|.+||.+++|+|.+ ..|+++|.|++|++||+-.... .+.++ .+...+..+
T Consensus 459 ~IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~-~vEtl-~i~sdvl~v 526 (893)
T KOG0291|consen 459 EIFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG-TVETL-EIRSDVLAV 526 (893)
T ss_pred EEEEEEeecC---------eeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc-eeeeE-eeccceeEE
Confidence 5999999998 7888999999999999999998 8999999999999999976531 22333 245679999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769 456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 456 ~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
+|+|+|.. ||++..||.|.+||+..+.++..+-+
T Consensus 527 sfrPdG~e-laVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 527 SFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EEcCCCCe-EEEEEecceEEEEEhhhceeeccccc
Confidence 99999995 99999999999999998887744433
No 15
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-35 Score=251.29 Aligned_cols=293 Identities=23% Similarity=0.331 Sum_probs=238.2
Q ss_pred ccccccCC-CceEEEE--EecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC-CCEEEEecCC
Q 010769 143 EDMTINPN-DAVIVCA--RNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAVGSME 218 (502)
Q Consensus 143 ~~~~~~p~-~~~l~~~--~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~-~~~la~g~~d 218 (502)
.+++|+|- .+.||+| ..-|-.+.-++++++..... .+..........--+.++| +++ .+.+++++.|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~--gi~e~~s~d~~D~LfdV~W-------se~~e~~~~~a~GD 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK--GIQECQSYDTEDGLFDVAW-------SENHENQVIAASGD 82 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC--CeEEEEeeecccceeEeee-------cCCCcceEEEEecC
Confidence 46778875 3344333 22332334477777664221 2221111112222245566 554 7889999999
Q ss_pred CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~ 298 (502)
|+++|||+.. ...+...++.|...|.++.|++..+..++++|.|++|++|+...
T Consensus 83 GSLrl~d~~~--------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 83 GSLRLFDLTM--------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ceEEEeccCC--------------------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 9999999642 12345567789999999999998788899999999999999999
Q ss_pred CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 378 (502)
++.+++|.+|...|....|+|..++++++++.|+++++||+|..........|...+.|+.|+....+++++|+.|+.|+
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 99999999999999999999999999999999999999999988776667788889999999999999999999999999
Q ss_pred EEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+||+|+. ..++..+.+|.-.|..+.|||....+|++++.|=+++|||...+. .++.+...|...+..+.|+
T Consensus 217 ~wDir~~--------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 217 GWDIRNL--------RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWS 287 (311)
T ss_pred EEehhhc--------cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch-hhhhhhhccceEEeccccc
Confidence 9999998 588999999999999999999988899999999999999998654 3566777899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEC
Q 010769 459 EDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 459 pd~~~llasg~~dg~i~vwd~ 479 (502)
+-.+..+|++|.|+.++||+.
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 987778999999999999984
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=256.89 Aligned_cols=283 Identities=16% Similarity=0.274 Sum_probs=227.9
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC-CceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
.|...|.++.++|+.+++++|+.++ .-++|+...+.. ..+..|.+.+ .|+.| |.+|.|||||
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD-----~AflW~~~~ge~~~eltgHKDSV-----t~~~F-------shdgtlLATG 124 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDD-----LAFLWDISTGEFAGELTGHKDSV-----TCCSF-------SHDGTLLATG 124 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCc-----eEEEEEccCCcceeEecCCCCce-----EEEEE-------ccCceEEEec
Confidence 4889999999999999999999887 666776665532 2333566655 57777 7899999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
.++|.|+||...++.... .+......|.-|.|+|. ..+|+.|+.||.|.+|.
T Consensus 125 dmsG~v~v~~~stg~~~~---------------------------~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQW---------------------------KLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQ 176 (399)
T ss_pred CCCccEEEEEcccCceEE---------------------------EeecccCceEEEEeccc-ccEEEeecCCCcEEEEE
Confidence 999999999997533222 22235577889999998 67999999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-------------------------
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA------------------------- 350 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------------------------- 350 (502)
+.++...+.+.+|+.++++-.|.|+| +.++++..||+|++|++.++........
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 99988888999999999999999998 8999999999999999987654321110
Q ss_pred --------------------------ecCCeEEEEeCCCCC--CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769 351 --------------------------VAADVESLAWDPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 402 (502)
Q Consensus 351 --------------------------~~~~v~~v~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 402 (502)
+...+.|+.+.|... .++++|+-||+|.|||+... .++....
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----------~~R~~c~ 325 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----------TLRHICE 325 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------hhheecc
Confidence 001122222222211 26888999999999999864 4455566
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
|..+|+.+.|-+ . .+|++++.+|.|+.||.++++ ++..+.+|...|.+++++|+.+ +++++|.|++.+||++.
T Consensus 326 he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 326 HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCceEEEEEcC-c-chheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 999999999998 3 799999999999999999998 7889999999999999999999 69999999999999874
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-34 Score=249.21 Aligned_cols=249 Identities=24% Similarity=0.324 Sum_probs=211.9
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+...++++++|..|.+|++...+. +...+...+.||...|..+..+++ +++.+++|.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~----------------------~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~sw 83 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDI----------------------KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASW 83 (315)
T ss_pred CCceEEEcccceEEEEEEeccCcc----------------------ccCceeeeeeccceEecceEEccC-CceEEeccc
Confidence 578899999999999999975322 234556677899999999999999 679999999
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-cCCeEEEEeCCCC-C
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHA-E 365 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~-~ 365 (502)
|+++++||+.+++..+.|.+|...|.+++|++++ +.+++|+.|++|++|++............ ...|.|++|+|.. .
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 9999999999999999999999999999999999 89999999999999999765543322222 6789999999984 4
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
.+++.++.|++|++||+++. +....+.+|++.++.+++||+| .++++|+.||.+.+||++.++ .+..+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~---------~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k--~lysl 230 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNC---------QLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK--NLYSL 230 (315)
T ss_pred cEEEEccCCceEEEEccCCc---------chhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc--eeEec
Confidence 48999999999999999986 7778889999999999999999 999999999999999999998 45555
Q ss_pred cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 446 ~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
.|...|.+++|+|+..+ |+.+ ....|+|||+.++..+..+-....++
T Consensus 231 -~a~~~v~sl~fspnryw-L~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~ 277 (315)
T KOG0279|consen 231 -EAFDIVNSLCFSPNRYW-LCAA-TATSIKIWDLESKAVVEELKLDGIGP 277 (315)
T ss_pred -cCCCeEeeEEecCCcee-Eeec-cCCceEEEeccchhhhhhcccccccc
Confidence 46789999999999864 5544 44569999999999887665544443
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-34 Score=263.24 Aligned_cols=282 Identities=20% Similarity=0.353 Sum_probs=239.5
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
....|+++.|+.+|.+||+|+.+| .++||..+...- ..+..|..++ +.+.| +..|+||++|+.
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G---~~riw~~~G~l~---~tl~~HkgPI----~slKW-------nk~G~yilS~~v 296 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDG---EARIWNKDGNLI---STLGQHKGPI----FSLKW-------NKKGTYILSGGV 296 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCc---EEEEEecCchhh---hhhhccCCce----EEEEE-------cCCCCEEEeccC
Confidence 456899999999999999999998 345555443322 3344454444 78999 678999999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
|+++.+||..++...+ .+.-|..+-..+.|-.+ ..+++++.|+.|+|+.+.
T Consensus 297 D~ttilwd~~~g~~~q---------------------------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~ 347 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQ---------------------------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVG 347 (524)
T ss_pred CccEEEEeccCceEEE---------------------------eeeeccCCccceEEecC--ceEeecCCCceEEEEEec
Confidence 9999999986543332 23347777788999876 379999999999999999
Q ss_pred CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC--------CEEE
Q 010769 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE--------HSFV 369 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~--------~~l~ 369 (502)
...++.++.+|.++|.+|.|+|.+ .+|++++.|++++||.+........+..|...|..+.|+|.++ ..++
T Consensus 348 ~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 348 EDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred CCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 999999999999999999999999 9999999999999999988888777888999999999998753 3688
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC
Q 010769 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA 449 (502)
Q Consensus 370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~ 449 (502)
+++.|++|++||+..+ .+++.+..|..+|.+++|+|++ .++|+|+.||.|.+|++++++ .+....+ .
T Consensus 427 sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~--l~~s~~~-~ 493 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK--LVKSYQG-T 493 (524)
T ss_pred EeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh--eeEeecC-C
Confidence 9999999999999987 8899999999999999999998 999999999999999999998 4555544 4
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 450 ~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
+.|+.++|+.+|.+ |+++-.||.+++-|++
T Consensus 494 ~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 494 GGIFELCWNAAGDK-LGACASDGSVCVLDLR 523 (524)
T ss_pred CeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence 66999999999985 7777889999999875
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-34 Score=283.07 Aligned_cols=274 Identities=22% Similarity=0.344 Sum_probs=227.9
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------C---------------------CCceeeeeccc
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------G---------------------DPNLYVHHHII 188 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~---------------------~~~l~~~~~~~ 188 (502)
...++|..|+++..+||+|..+. .+++|.+..... . ...+++|...+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS---~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDS---SVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred CCcceeEeecCCcchhhcccccc---EEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 45799999999999999998774 678887763210 0 01123333211
Q ss_pred cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc
Q 010769 189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 189 ~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
+ ...|+|+.++|++++.|++||+|.+.+ ......+.||..+
T Consensus 455 -----y-------g~sFsPd~rfLlScSED~svRLWsl~t---------------------------~s~~V~y~GH~~P 495 (707)
T KOG0263|consen 455 -----Y-------GCSFSPDRRFLLSCSEDSSVRLWSLDT---------------------------WSCLVIYKGHLAP 495 (707)
T ss_pred -----e-------eeeecccccceeeccCCcceeeeeccc---------------------------ceeEEEecCCCcc
Confidence 2 234589999999999999999999986 3444456699999
Q ss_pred eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce
Q 010769 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK 348 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 348 (502)
|+++.|+|. +.++||||.|++.++|.....++.+.|.+|-+.|.|+.|||+. .++++|+.|.+|++||+.++..++.+
T Consensus 496 VwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 496 VWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred eeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe
Confidence 999999999 7899999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
.+|.++|++++|+|.|. ++++|+.+|.|.+||+.++ .++..+.+|++.|.++.|+.+| ..||+|+.|++
T Consensus 574 ~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~Dns 642 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNS 642 (707)
T ss_pred cCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCC---------cchhhhhcccCceeEEEEecCC-CEEEecCCCCe
Confidence 89999999999999765 8999999999999999987 7888999999999999999998 99999999999
Q ss_pred EEEEECCCCCe----------------------eEEEEecCCCCCEEEEEEcCCCCcEEEEE
Q 010769 429 VKLWDLSNNQP----------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIG 468 (502)
Q Consensus 429 i~vwd~~~~~~----------------------~~~~~~~~~~~~v~~~~~spd~~~llasg 468 (502)
|++||+..... .++..+.....+|.++.|.... .+|++|
T Consensus 643 V~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN-l~L~~g 703 (707)
T KOG0263|consen 643 VRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN-LLLAVG 703 (707)
T ss_pred EEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc-eeEEec
Confidence 99999865321 1344444555677778777655 244443
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=245.28 Aligned_cols=248 Identities=21% Similarity=0.346 Sum_probs=213.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|+|.+||+|+.|..|.+|++.... .....+.+|.++|+.+.|.++ ++.|+|+
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------eN~~~lkgHsgAVM~l~~~~d-~s~i~S~ 108 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVYGDC--------------------------ENFWVLKGHSGAVMELHGMRD-GSHILSC 108 (338)
T ss_pred CCCCCeEeecCCcceEEEEeccccc--------------------------cceeeeccccceeEeeeeccC-CCEEEEe
Confidence 7999999999999999999975311 112234489999999999999 6699999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
+.|.+|+.||+++|++++.+++|...|+++.-+..|..++.+++.||++++||+|+..... ......+++++.|...+.
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~-t~~~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK-TFENKYQLTAVGFKDTSD 187 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh-ccccceeEEEEEeccccc
Confidence 9999999999999999999999999999999888888899999999999999999877655 455567899999998766
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA 443 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~ 443 (502)
.+.+|+-|+.|++||+|.. ...+.+.+|..+|+.+..+|.| .++.+-+.|.++++||++...+ .++.
T Consensus 188 -qv~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 188 -QVISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred -ceeeccccCceeeeccccC---------cceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEE
Confidence 7999999999999999987 7899999999999999999998 9999999999999999987543 3455
Q ss_pred EecCCC----CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769 444 SRNPKA----GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 444 ~~~~~~----~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
.+.+|. -....++|+|++.+ +.+|+.|..+++||..+...+..+.+++-
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccccEEEEcCCcce
Confidence 555442 23568899999996 88999999999999988887777766654
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=262.27 Aligned_cols=246 Identities=20% Similarity=0.361 Sum_probs=215.7
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
...+.| .|+|+.|++|+..|.+.+|+... ......++.|..+|.++
T Consensus 99 V~~v~W-------tPeGRRLltgs~SGEFtLWNg~~---------------------------fnFEtilQaHDs~Vr~m 144 (464)
T KOG0284|consen 99 VNVVRW-------TPEGRRLLTGSQSGEFTLWNGTS---------------------------FNFETILQAHDSPVRTM 144 (464)
T ss_pred eeeEEE-------cCCCceeEeecccccEEEecCce---------------------------eeHHHHhhhhcccceeE
Confidence 345666 79999999999999999999843 23334566899999999
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 352 (502)
.|+++ +.+++||+.+|.|++|+.+-........+|...|++++|+|.. ..|++++.||+|+|||.+..+....+.+|.
T Consensus 145 ~ws~~-g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHg 222 (464)
T KOG0284|consen 145 KWSHN-GTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHG 222 (464)
T ss_pred EEccC-CCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCC
Confidence 99999 6799999999999999976544333334455999999999987 899999999999999999988877788999
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
-.|.++.|+|..+ ++++++.|..|++||.+++ .++.++..|...|..+.|+|++ ++|+|+|.|..+++|
T Consensus 223 wdVksvdWHP~kg-LiasgskDnlVKlWDprSg---------~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 223 WDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSG---------SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVF 291 (464)
T ss_pred CCcceeccCCccc-eeEEccCCceeEeecCCCc---------chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEE
Confidence 9999999999755 8999999999999999998 8899999999999999999999 999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
|+++.+ -++.+.+|...|+++.|+|-...||++||.||.|..|.+...+.+..
T Consensus 292 DiR~mk--El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~ 344 (464)
T KOG0284|consen 292 DIRTMK--ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE 344 (464)
T ss_pred ehhHhH--HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence 999665 57788899999999999998888999999999999999985554433
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.8e-33 Score=242.29 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=239.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|..+|..+.|+|+|.++|+|+.+. .+-+|...........+..|...+ +-+.| .++++.|+++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr---~I~LWnv~gdceN~~~lkgHsgAV-----M~l~~-------~~d~s~i~S~ 108 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDR---AIVLWNVYGDCENFWVLKGHSGAV-----MELHG-------MRDGSHILSC 108 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcc---eEEEEeccccccceeeecccccee-----Eeeee-------ccCCCEEEEe
Confidence 46899999999999999999999997 344554333333122333444333 45566 6899999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.|.+|+.||+.++... ..+++|.+.|+.+.-+.-|..++.||+.|++++|||
T Consensus 109 gtDk~v~~wD~~tG~~~---------------------------rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRI---------------------------RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred cCCceEEEEecccceee---------------------------ehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence 99999999999875443 345689999999997766778999999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 375 (502)
+++..+++++. ....++++.|...+ ..+++|+-|+.|++||+|.........+|...|+.+..+|.|. ++++-+.|.
T Consensus 162 ~R~k~~~~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~ 238 (338)
T KOG0265|consen 162 IRKKEAIKTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDN 238 (338)
T ss_pred ecccchhhccc-cceeEEEEEecccc-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccc
Confidence 99999988886 46789999999888 7899999999999999999998888889999999999999876 788999999
Q ss_pred eEEEEECCCCCCCCCCCCCCccEEEecCC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC
Q 010769 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
++++||+|..... .+++..+.+|. .....++|+|++ ..+.+|+.|..+++||..... .++.+.+|.+.
T Consensus 239 tvrvwd~rp~~p~-----~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gs 310 (338)
T KOG0265|consen 239 TVRVWDVRPFAPS-----QRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRR--ILYKLPGHYGS 310 (338)
T ss_pred eEEEEEecccCCC-----CceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeeccccc--EEEEcCCccee
Confidence 9999999976331 24466666553 356778999998 899999999999999998876 78899999999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769 452 VFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 452 v~~~~~spd~~~llasg~~dg~i~vw 477 (502)
|.++.|+|..+ +|.+++.|.+|++=
T Consensus 311 vn~~~Fhp~e~-iils~~sdk~i~lg 335 (338)
T KOG0265|consen 311 VNEVDFHPTEP-IILSCSSDKTIYLG 335 (338)
T ss_pred EEEeeecCCCc-EEEEeccCceeEee
Confidence 99999999999 58889999998874
No 23
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.1e-33 Score=248.45 Aligned_cols=292 Identities=21% Similarity=0.322 Sum_probs=240.7
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
-.|++.|.++... +..|++|+.++ .++||....... ..+..|..++ ..+.|+.- .+....|+++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg---~~riWd~~Gk~~---~~~~Ght~~i----k~v~~v~~----n~~~~~fvsa 165 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDG---TSRIWDLKGKSI---KTIVGHTGPI----KSVAWVIK----NSSSCLFVSA 165 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCC---eeEEEecCCceE---EEEecCCcce----eeeEEEec----CCccceEEEe
Confidence 4589999999999 88999999998 557776655443 5566665555 45677632 2335589999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
++|.++++|.++.++.+.. ....-.||...|-+++..++ +..+++||.|.+|+||+
T Consensus 166 s~Dqtl~Lw~~~~~~~~~~-----------------------~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENKVK-----------------------ALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWS 221 (423)
T ss_pred cCCceEEEEEecCchhhhh-----------------------HHhHhcccccceeEEEecCC-CCeEEeecccceeeecc
Confidence 9999999999976543321 11122399999999999999 67999999999999999
Q ss_pred CC-------------------------CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769 296 VA-------------------------AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 350 (502)
Q Consensus 296 ~~-------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 350 (502)
.. ++.++.++.+|+.+|.++.|++. ..+++++.|.+|+.||+.+++... ...
T Consensus 222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~-~~~ 298 (423)
T KOG0313|consen 222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS-TLT 298 (423)
T ss_pred cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee-eee
Confidence 32 22456778999999999999994 589999999999999999988765 455
Q ss_pred ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430 (502)
Q Consensus 351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~ 430 (502)
.+..+.|+..+|.. .++++|+.|..|++||.|++.. ....+++.+|...|.++.|+|....+|++|+.|++++
T Consensus 299 ~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 299 TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 67789999999965 4899999999999999998743 4567889999999999999999989999999999999
Q ss_pred EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
+||+++.+. .++.+.+|...|.++.|...+ ++++||.|.+|+|+.-.
T Consensus 372 lWDvRS~k~-plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 372 LWDVRSTKA-PLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEeccCCC-cceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 999998762 578889999999999998765 59999999999998754
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.1e-32 Score=290.02 Aligned_cols=295 Identities=18% Similarity=0.224 Sum_probs=228.5
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--C---CCceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--G---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~ 211 (502)
.|...|.+++|+|++++||+|+.++ .++||....... . .+.....+ .....++.|. ++.+++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~---~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~v~~l~~~------~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNK---KIKIFECESIIKDGRDIHYPVVELAS----RSKLSGICWN------SYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCC---EEEEEECCcccccccccccceEEecc----cCceeeEEec------cCCCCE
Confidence 3788899999999999999999887 566776542110 0 00111111 1223567774 235889
Q ss_pred EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 291 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v 291 (502)
||+|+.||+|+|||+.+.. ....+.+|...|++++|+|..+.+|++|+.||+|
T Consensus 548 las~~~Dg~v~lWd~~~~~---------------------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v 600 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQ---------------------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV 600 (793)
T ss_pred EEEEeCCCeEEEEECCCCe---------------------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence 9999999999999997522 2234458999999999998547799999999999
Q ss_pred EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceEeecCCeEEEEeCCCCCCEEEE
Q 010769 292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~ 370 (502)
++||+.++.++..+..+ ..|.++.|++..+.+|++|+.||.|++||++.... ......|...|.++.|.+ + ..+++
T Consensus 601 ~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~lvs 677 (793)
T PLN00181 601 KLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STLVS 677 (793)
T ss_pred EEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEEEE
Confidence 99999999998888754 68999999765448999999999999999987653 334457888999999974 3 47999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE------
Q 010769 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS------ 444 (502)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~------ 444 (502)
++.|+.|++||++...... ...++..+.+|...+.+++|+|++ .+|++|+.|+.|++|+.....+.....
T Consensus 678 ~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred EECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 9999999999998642100 025677889999999999999998 899999999999999987665332222
Q ss_pred -----ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 445 -----RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 445 -----~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
...+...|.+++|+|++. +|++|+.+|.|+||++
T Consensus 754 ~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 754 VSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred ccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 123456799999999999 5889999999999996
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-34 Score=252.27 Aligned_cols=241 Identities=26% Similarity=0.426 Sum_probs=218.5
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
+++.|...+|++|+.|++|.|||+.+ ..+...+.||...|..+++++-. .+|
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlat---------------------------g~LkltltGhi~~vr~vavS~rH-pYl 208 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLAT---------------------------GQLKLTLTGHIETVRGVAVSKRH-PYL 208 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEccc---------------------------CeEEEeecchhheeeeeeecccC-ceE
Confidence 33478899999999999999999986 44455677999999999999984 599
Q ss_pred EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
++++.|+.|+.||+...+.++.+.+|-+.|.|++.+|.- ..|++|+.|.++++||+|+...+..+.+|...|.++.+.|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence 999999999999999999999999999999999999998 8999999999999999999998888889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
.++ .+++|+.|++|++||++.+ +....+..|...|.+++.+|.- ..+|+++.|. |+-|++..+. .+
T Consensus 288 ~dp-qvit~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g~--f~ 353 (460)
T KOG0285|consen 288 TDP-QVITGSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEGE--FL 353 (460)
T ss_pred CCC-ceEEecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCccc--hh
Confidence 877 7999999999999999997 7788899999999999999976 8888888775 9999999987 45
Q ss_pred EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
..+.+|.+-|++++...|+ ++++|+.+|.+.+||.+++...++.
T Consensus 354 ~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred hccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence 6688999999999999998 5889999999999999999876554
No 26
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-32 Score=251.21 Aligned_cols=251 Identities=22% Similarity=0.389 Sum_probs=217.1
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
..+.+++|+++..+.|.|||.......... .....+...+.+|...-.+|+|++.....|++|
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-----------------~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKA-----------------SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccc-----------------cccCCCceEEEeecccccccccccccceeEeec
Confidence 346889999999999999998753332210 002344556778999889999999877899999
Q ss_pred ecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC--CCCccceEeecCCeE
Q 010769 286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--STHSGFKWAVAADVE 356 (502)
Q Consensus 286 s~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~ 356 (502)
+.|++|++||+... .+...+.+|...|..++|++....+|++++.|+.+.|||+|+ .+.......|.+.+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 99999999999753 235667899999999999999989999999999999999995 444455568899999
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
|++|+|.+..+|++|+.|++|++||+|+. ..++.++.+|...|.++.|+|+...+||+++.|+.+.|||+..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 99999999999999999999999999998 5799999999999999999999989999999999999999864
Q ss_pred ------------CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 437 ------------NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 437 ------------~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
+.+.+++...+|...|..+.|+|..+++|++.+.|+.+.||.+..
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567889999999999999999999999999999999999863
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-31 Score=253.57 Aligned_cols=283 Identities=30% Similarity=0.494 Sum_probs=230.5
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
.|...|.++.|+|++++|++++.++ .+.+|.+..... ......|... ..++.| ++++++|++++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g---~i~i~~~~~~~~--~~~~~~~~~~----i~~~~~-------~~~~~~l~~~~ 70 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDG---TIKVWDLETGEL--LRTLKGHTGP----VRDVAA-------SADGTYLASGS 70 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCc---EEEEEEeeCCCc--EEEEecCCcc----eeEEEE-------CCCCCEEEEEc
Confidence 4788999999999999999999776 556666654321 1111112111 135566 67889999999
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
.+|.|++|++.... ....+..|...|.++.|+++ +.++++++.++.|++|++
T Consensus 71 ~~~~i~i~~~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 71 SDKTIRLWDLETGE---------------------------CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDV 122 (289)
T ss_pred CCCeEEEEEcCccc---------------------------ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEEC
Confidence 99999999997532 12233468889999999998 568888888999999999
Q ss_pred CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 376 (502)
.+++....+..|...|.++.|+|++ .++++++.++.|++||++..+.......+...+.++.|+|++. .+++++.+|.
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~ 200 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGT 200 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC-EEEEecCCCc
Confidence 9999999999899999999999997 7888888899999999998777665666777899999999875 6777778999
Q ss_pred EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
|++||++.. ..+..+..|...+.++.|+|++ .++++++.++.|++|++.+.+ ....+..|...|.+++
T Consensus 201 i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~ 268 (289)
T cd00200 201 IKLWDLSTG---------KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLA 268 (289)
T ss_pred EEEEECCCC---------ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEE
Confidence 999999875 5566666888899999999985 888888889999999999876 4455567888999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEE
Q 010769 457 FSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 457 ~spd~~~llasg~~dg~i~vwd 478 (502)
|+|++. .|++++.||.|++|+
T Consensus 269 ~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 269 WSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred ECCCCC-EEEEecCCCeEEecC
Confidence 999988 588999999999996
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-33 Score=270.42 Aligned_cols=291 Identities=22% Similarity=0.350 Sum_probs=242.6
Q ss_pred Ccccccccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 138 DSEDLEDMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
-.++|.+|+|. |..+.||+|++.. .+++|....... .++..|.-.+ +++.- ..+|-+||+|+
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~---~lr~y~~~~~~c---~ii~GH~e~v----lSL~~-------~~~g~llat~s 384 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSP---ELRLYTLPTSYC---QIIPGHTEAV----LSLDV-------WSSGDLLATGS 384 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCC---ceEEEecCCCce---EEEeCchhhe----eeeee-------cccCcEEEEec
Confidence 45688999886 7889999999887 566664444443 3444443332 34441 24678999999
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
.|.++++|.++...+. ........+|+..|.+++++..+..+|+++|.|+++++|++
T Consensus 385 KD~svilWr~~~~~~~-----------------------~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSK-----------------------SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred CCceEEEEEecCCcch-----------------------hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 9999999998532221 22233456899999999999988899999999999999999
Q ss_pred CCCee-----e----EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769 297 AAGKC-----N----LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 297 ~~~~~-----~----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 367 (502)
...+. + .+...|...|+|++.+|+. .+++||+.|++.+||++........+.+|...|.||.|+|.+. +
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~ 519 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-L 519 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-e
Confidence 76221 1 1235699999999999999 9999999999999999998887888889999999999999754 8
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010769 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
+++++.|++|+||.+.+. .++.++.+|...|..+.|-.++ ..|++++.||-|++|++.++. |+.++..
T Consensus 520 laT~SgD~TvKIW~is~f---------SClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e--C~~tlD~ 587 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTF---------SCLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE--CEMTLDA 587 (775)
T ss_pred eEeccCCceEEEEEeccc---------eeeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh--hhhhhhh
Confidence 999999999999999997 8999999999999999999998 899999999999999999998 8999999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
|...|++++.+|... ++++|+.||.|.+|.=-+..
T Consensus 588 H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred ccceeEEEeecCccc-eeEecCCCeEEEEeecCcHH
Confidence 999999999999998 69999999999999755543
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=273.33 Aligned_cols=286 Identities=22% Similarity=0.367 Sum_probs=232.5
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCC-CCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-GGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
+...|.++.|+|+|+.+++++.++ .+.+|...... .....+..|+..+ .++.| +|++.++++|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~---~i~~~~~~~~~~~~~~~l~~h~~~v-----~~~~f-------s~d~~~l~s~s 222 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDG---LIRIWKLEGIKSNLLRELSGHTRGV-----SDVAF-------SPDGSYLLSGS 222 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCC---cEEEeecccccchhhccccccccce-----eeeEE-------CCCCcEEEEec
Confidence 467899999999999999998887 45777663332 1112333344322 45555 89999999999
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
.|++|+||++... ......+.+|...|++++|+|.+ +++++|+.|++|+|||+
T Consensus 223 ~D~tiriwd~~~~--------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 223 DDKTLRIWDLKDD--------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDV 275 (456)
T ss_pred CCceEEEeeccCC--------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEec
Confidence 9999999999321 23444667999999999999996 89999999999999999
Q ss_pred CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC--ccceEeecC--CeEEEEeCCCCCCEEEEEe
Q 010769 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAA--DVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~--~v~~v~~~p~~~~~l~~~~ 372 (502)
++++++..+.+|...|++++|++++ ++|++++.|+.|++||+.++.. ......+.. .+.+++|+|++. ++++++
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~ 353 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSAS 353 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEec
Confidence 9999999999999999999999999 8999999999999999999883 333333333 599999999876 899999
Q ss_pred CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe---eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-
Q 010769 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK- 448 (502)
Q Consensus 373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~- 448 (502)
.|+.+++||++.. ..+....+|...+ .+..+++.+ .++++|+.|+.|++|++.+.. .+..+.+|
T Consensus 354 ~d~~~~~w~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~ 421 (456)
T KOG0266|consen 354 LDRTLKLWDLRSG---------KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGG--ILQRLEGHS 421 (456)
T ss_pred CCCeEEEEEccCC---------cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccc--hhhhhcCCC
Confidence 9999999999987 6677777777643 344455666 999999999999999999876 46667778
Q ss_pred CCCEEEEEEcCCCCcEEEEEe--CCCcEEEEECC
Q 010769 449 AGAVFSVAFSEDSPFVLAIGG--SKGKLEIWDTL 480 (502)
Q Consensus 449 ~~~v~~~~~spd~~~llasg~--~dg~i~vwd~~ 480 (502)
...+..+.++|..+ ++++++ .|+.+++|...
T Consensus 422 ~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 422 KAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 88999999999998 588887 68899999753
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=230.83 Aligned_cols=283 Identities=21% Similarity=0.397 Sum_probs=223.2
Q ss_pred CCCccccccccccCC-CceEEEEEecCCcceeEEEEEecCCCCCCceeee------eccccCCCcceeeeecCCCCCCCC
Q 010769 136 DEDSEDLEDMTINPN-DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVH------HHIIIPAFPLCMAWLDCPLKDREK 208 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~-~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~w~~~~~~~s~~ 208 (502)
..|.+.+..++|+|- |.+||+++.+. .++||.... .. .+... |...+ -.++| +|.
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk---~vriw~~~~-~~---s~~ck~vld~~hkrsV----RsvAw-------sp~ 72 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDK---AVRIWSTSS-GD---SWTCKTVLDDGHKRSV----RSVAW-------SPH 72 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCc---eEEEEecCC-CC---cEEEEEeccccchhee----eeeee-------cCC
Confidence 347778999999999 99999999887 456665543 11 22211 22222 35566 899
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
|++||+|+.|.++.||.-.. ........+.||...|.|++|+++ +++||+||.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~-------------------------~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRD 126 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKED-------------------------GEFECVATLEGHENEVKCVAWSAS-GNYLATCSRD 126 (312)
T ss_pred CcEEEEeeccceEEEeecCC-------------------------CceeEEeeeeccccceeEEEEcCC-CCEEEEeeCC
Confidence 99999999999999997432 113445567799999999999999 6699999999
Q ss_pred CcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC---CCccceEeecCCeEEEEeCC
Q 010769 289 KQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS---THSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 289 g~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~v~~~p 362 (502)
+.|.||.+..+ .++..++.|+..|..+.|||.. .+|+++++|.+|++|.-... .+...+..|...|.+++|++
T Consensus 127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 99999998754 5788899999999999999998 89999999999999987632 23444556777999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--e-
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--P- 439 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~- 439 (502)
.|. .+++++.|++|+||-..+. - -..|..++..+.|. + ..|++++.|+.|++|.-.... +
T Consensus 206 ~G~-rl~s~sdD~tv~Iw~~~~~---------~----~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~ 268 (312)
T KOG0645|consen 206 IGS-RLVSCSDDGTVSIWRLYTD---------L----SGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPS 268 (312)
T ss_pred CCc-eEEEecCCcceEeeeeccC---------c----chhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCch
Confidence 875 7999999999999987643 1 12478899999999 3 689999999999999766421 1
Q ss_pred -e-EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 440 -S-CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 440 -~-~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
. .......|...|++++|.|..+.+|++||.||.|++|.+.
T Consensus 269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1 1223456788999999999655579999999999999874
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-32 Score=257.65 Aligned_cols=288 Identities=19% Similarity=0.304 Sum_probs=239.2
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
+.+.|.++.+||+...++++-..| .+.||.|+.... ....+ +...|... .+|-...+++++|+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG---~V~IWnyetqtm----Vksfe---V~~~PvRa------~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNG---DVQIWNYETQTM----VKSFE---VSEVPVRA------AKFIARKNWIVTGSD 75 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecC---eeEEEeccccee----eeeee---ecccchhh------heeeeccceEEEecC
Confidence 678899999999999999999998 569999987652 12222 11222211 112356889999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
|..||||++++++. ...+..|.+-|.||+.+|. ..+++|+|.|-+|++||.+
T Consensus 76 D~~IrVfnynt~ek---------------------------V~~FeAH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEK---------------------------VKTFEAHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred CceEEEEeccccee---------------------------eEEeeccccceeeeeecCC-CCeEEecCCccEEEEeecc
Confidence 99999999987443 4456789999999999999 6699999999999999997
Q ss_pred CC-eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC-CCEEEEEeCCC
Q 010769 298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA-EHSFVVSLEDG 375 (502)
Q Consensus 298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~dg 375 (502)
.. .+.++|.+|+.-|.+++|+|..++.|++++.|++|++|.+.++.+...+.+|...|+|+.+-+.+ ..++++|+.|.
T Consensus 128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 64 78899999999999999999999999999999999999999988888788999999999998754 33899999999
Q ss_pred eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE
Q 010769 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV 455 (502)
Q Consensus 376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 455 (502)
+|++||.++. .++.++.+|...|+.+.|+|.- .+++|||.||+|+||+..+-+ +..++......++|+
T Consensus 208 tiKvWDyQtk---------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~--lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 208 TIKVWDYQTK---------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYK--LEKTLNYGLERVWCI 275 (794)
T ss_pred eEEEeecchH---------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCccee--hhhhhhcCCceEEEE
Confidence 9999999997 8999999999999999999987 799999999999999988876 445555667889999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 456 AFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 456 ~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+-.+.+. .++.|...|.|. ..+....
T Consensus 276 ~~~k~~~-~i~vG~Deg~i~-v~lgree 301 (794)
T KOG0276|consen 276 AAHKGDG-KIAVGFDEGSVT-VKLGREE 301 (794)
T ss_pred eecCCCC-eEEEeccCCcEE-EEccCCC
Confidence 9988887 477777666543 3443333
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-31 Score=247.84 Aligned_cols=323 Identities=16% Similarity=0.253 Sum_probs=245.1
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
.+|..-|.|+.|+|+|.++++++.++ ++++|+...+....... ......+-.+++.| +||++.|+++
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDg-----ki~iyDGktge~vg~l~-~~~aHkGsIfalsW-------sPDs~~~~T~ 253 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDG-----KIYIYDGKTGEKVGELE-DSDAHKGSIFALSW-------SPDSTQFLTV 253 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCc-----cEEEEcCCCccEEEEec-CCCCccccEEEEEE-------CCCCceEEEe
Confidence 56889999999999999999999999 99999987762211111 01122233478888 8999999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchh--hhhhc--------------cccCCccccccccCCcccceeeEEecCCCC
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEE--KKKKK--------------SKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~--~~~~~--------------~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
+.|.+++|||+.+.........-.....+ .-.|. --..........+.||...|++|..+|++
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~- 332 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG- 332 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-
Confidence 99999999999876554433322221111 00000 00011223556778999999999999995
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-----------
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF----------- 347 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------- 347 (502)
.+|+||+.||.|.-|+..++..-+.. +.|+..|.+++-+..+ .+++++.|.++++.++........
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~ 410 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG 410 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCcee
Confidence 79999999999999999998766554 7899999999988755 588999999999997642111000
Q ss_pred --------------------e--------EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE
Q 010769 348 --------------------K--------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399 (502)
Q Consensus 348 --------------------~--------~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 399 (502)
+ ....-...+++++|++. .+++|+.||.|++|.+..... .....
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l-------~ee~~ 482 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDEL-------KEEAK 482 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEecccceEEEEEecCCcc-------cceee
Confidence 0 00122457889999865 899999999999999987531 34445
Q ss_pred EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
+..|.++|++++|+|++ .+||+|...+.+.+||+.+.+. .......|.+.|.+++|+|+.. ++|+|+-|..|.||++
T Consensus 483 ~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSV 559 (603)
T ss_pred eecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEc
Confidence 67799999999999998 9999999999999999999875 4444556899999999999998 7999999999999999
Q ss_pred CCCccc
Q 010769 480 LSDAGI 485 (502)
Q Consensus 480 ~~~~~~ 485 (502)
......
T Consensus 560 ~kP~~~ 565 (603)
T KOG0318|consen 560 KKPAKH 565 (603)
T ss_pred cChhhh
Confidence 875544
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-32 Score=263.54 Aligned_cols=296 Identities=23% Similarity=0.328 Sum_probs=242.8
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
.+++..+...+....+++.+.+. .+..|+..+.. ...+.+.|+.+ +.+.++ .|..++||+++.
T Consensus 281 ~~e~~~~~~~~~~~~~l~vtaeQ-----nl~l~d~~~l~i~k~ivG~ndEI-----~Dm~~l------G~e~~~laVATN 344 (775)
T KOG0319|consen 281 SEEIDHLLAIESMSQLLLVTAEQ-----NLFLYDEDELTIVKQIVGYNDEI-----LDMKFL------GPEESHLAVATN 344 (775)
T ss_pred chhhhcceeccccCceEEEEccc-----eEEEEEccccEEehhhcCCchhh-----eeeeec------CCccceEEEEeC
Confidence 33477777777777777777776 55555544431 11333455544 455554 678899999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
.+.+|+|++.+..+. .+.||+..|.+|....+ +.+|+|||.|+++++|.++
T Consensus 345 s~~lr~y~~~~~~c~----------------------------ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ----------------------------IIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CCceEEEecCCCceE----------------------------EEeCchhheeeeeeccc-CcEEEEecCCceEEEEEec
Confidence 999999988765442 34589999999995555 3699999999999999885
Q ss_pred CCe----eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc--c-------ceEeecCCeEEEEeCCCC
Q 010769 298 AGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--G-------FKWAVAADVESLAWDPHA 364 (502)
Q Consensus 298 ~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~-------~~~~~~~~v~~v~~~p~~ 364 (502)
.+. ++....+|+..|.+++++..+..+|++++.|+++++|++...+.. . ....|...|+||+.+|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 442 455668999999999999999999999999999999999872211 1 123578899999999976
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. ++++|+.|.+.++|++... .....+.+|...|.++.|+|.. ++|+|+|.|++|+||.+.+.. |+.+
T Consensus 476 k-LiAT~SqDktaKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS--ClkT 542 (775)
T KOG0319|consen 476 K-LIATGSQDKTAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS--CLKT 542 (775)
T ss_pred c-eEEecccccceeeecccCc---------eEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce--eeee
Confidence 5 9999999999999999965 7889999999999999999987 999999999999999999987 8999
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
+.+|...|..+.|-.++.+ |++++.||-|++|+++++.|+.++=.|..
T Consensus 543 ~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred ecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 9999999999999999995 88999999999999999999988776654
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=243.35 Aligned_cols=290 Identities=16% Similarity=0.286 Sum_probs=233.2
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la 213 (502)
.+|.++|.-++|+++|++||+|+.+. +.-+|....... -...+..|+..+ ..+.| |||.++|+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V-----~yi~w-------SPDdryLl 285 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPV-----SYIMW-------SPDDRYLL 285 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCce-----EEEEE-------CCCCCeEE
Confidence 57999999999999999999999886 456665543321 011233444433 46677 89999999
Q ss_pred EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
+++.+..+.+||+.+++..... ..+|...+.+++|.|+ +..+++|+.|+++..
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y--------------------------~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLY--------------------------PSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIM 338 (519)
T ss_pred ecCchHheeeccCCcchhhhhc--------------------------ccCcCCCcceeEEccC-CceeEecCCCCcEEE
Confidence 9999999999999987654421 1246688999999999 568999999999999
Q ss_pred EECCCCeeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769 294 WDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 294 wd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 372 (502)
||+.. ......++- ...|.+++..++| ..+++.+.|..|++++..+..... ......+|++++.+.++. ++++.-
T Consensus 339 wdlDg-n~~~~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k-~~LvnL 414 (519)
T KOG0293|consen 339 WDLDG-NILGNWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGK-LALVNL 414 (519)
T ss_pred ecCCc-chhhcccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCc-EEEEEc
Confidence 99864 334444332 3579999999999 888888899999999988755443 456678899999999875 888889
Q ss_pred CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010769 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 450 (502)
Q Consensus 373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 450 (502)
.+..+++||+... ..+..+.+|... +..-+|.-....++++||.|+.|+||+..+++ ++..+.+|..
T Consensus 415 ~~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~ 483 (519)
T KOG0293|consen 415 QDQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSK 483 (519)
T ss_pred ccCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcc
Confidence 9999999999964 677788888653 55556665555899999999999999999998 6888999999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 451 AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 451 ~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
.|++++|+|..++++|+||.||+||||-....
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999999987643
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.9e-33 Score=246.89 Aligned_cols=277 Identities=20% Similarity=0.380 Sum_probs=232.1
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
....|.|+++ ++..+++|..+. +++||..+.-.. ...|++|...+ +|+.+ +.+.|++|+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDn---TikiWD~n~~~c-~~~L~GHtGSV-----LCLqy---------d~rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDN---TIKIWDKNSLEC-LKILTGHTGSV-----LCLQY---------DERVIVSGSS 255 (499)
T ss_pred cCCceEEEEe--cchhhhcccccC---ceEEeccccHHH-HHhhhcCCCcE-----Eeeec---------cceEEEecCC
Confidence 4567888776 466788998886 678887664432 22556666555 79876 5779999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
|.+|+|||+++++++. .+.+|..+|..+.|+.. +++++|.|.++.|||+.
T Consensus 256 DsTvrvWDv~tge~l~---------------------------tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~ 305 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLN---------------------------TLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMA 305 (499)
T ss_pred CceEEEEeccCCchhh---------------------------HHhhhcceeEEEEEeCC---EEEEecCCceeEEEecc
Confidence 9999999998755443 45689999999999865 89999999999999998
Q ss_pred CCe---eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769 298 AGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 298 ~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 374 (502)
... +.+.+.+|...|+.+.|+. +++++++.|.+|++|++.+...+....+|...|.|+.+. ..++++|+.|
T Consensus 306 sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSD 379 (499)
T KOG0281|consen 306 SPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSD 379 (499)
T ss_pred CchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCC
Confidence 764 3456689999999999975 689999999999999999999998888999999999986 3489999999
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------eEEEEecC
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-------SCIASRNP 447 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-------~~~~~~~~ 447 (502)
.+|++||+..+ .++..+.+|..-|.++.|.. ..+++|+.||+|+|||+....- .|+.....
T Consensus 380 ntIRlwdi~~G---------~cLRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 380 NTIRLWDIECG---------ACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE 447 (499)
T ss_pred ceEEEEecccc---------HHHHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhh
Confidence 99999999987 88999999999999999985 7899999999999999987532 36667778
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
|.+.|+.++|..- .+++++.|.+|.|||+..+..-
T Consensus 448 hsgRVFrLQFD~f---qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 448 HSGRVFRLQFDEF---QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccceeEEEeecce---EEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999653 4778889999999999887654
No 36
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=252.61 Aligned_cols=289 Identities=16% Similarity=0.294 Sum_probs=238.5
Q ss_pred CCCccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769 136 DEDSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~ 214 (502)
..|...|+++.|.| .+.+|++++.++ .++||.+..... ....|.+|..++ ..+.| +++|..+++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~---~vklW~vy~~~~-~lrtf~gH~k~V----rd~~~-------s~~g~~fLS 275 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDG---LVKLWNVYDDRR-CLRTFKGHRKPV----RDASF-------NNCGTSFLS 275 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCc---eEEEEEEecCcc-eehhhhcchhhh----hhhhc-------cccCCeeee
Confidence 57999999999999 899999999997 456665544222 234455565444 34444 788999999
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
++.|+.|++||++++.+...+. -...++|+.|+|++.+.+++|+.|+.|+.|
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~----------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFH----------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred eecceeeeeeccccceEEEEEe----------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 9999999999999877654321 235689999999988999999999999999
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEEeCCCCCCEEEEEeC
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~ 373 (502)
|+++++.++.+..|-+.|..+.|-+.+ ..+++++.|++++||+.+.+....... .......|+..+|+++ .+++-+.
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~ 405 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSM 405 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhcc
Confidence 999999999999999999999999999 899999999999999999877654332 3344578899999876 7888899
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEEEecCC--CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
++.|.+|.+..... ......+.+|. +.-..+.|||+| .+|++|..||.+.+||.++.+ .+..+..|.++
T Consensus 406 dN~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~ 476 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQP 476 (503)
T ss_pred CceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhh--hhhccccCCcc
Confidence 99999999765421 23334556664 566788999999 999999999999999999987 57778899999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 452 VFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 452 v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
+..+.|+|..+..+||||.+|.|++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 999999999888899999999999996
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-32 Score=230.87 Aligned_cols=219 Identities=23% Similarity=0.385 Sum_probs=197.6
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 343 (502)
-.+.+..++|++...+.+++++.||+++|||+.. ..+++.++.|...|.++.|++.....+++++.|++|++|+...+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4578999999999999999999999999999653 368899999999999999999888899999999999999999988
Q ss_pred CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769 344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
.+..+.+|...|..+.|+|..+++|++++.||.+++||+|.. .+.+. +..|...|.++.|+...+++|+||
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeecccccCCcEEEec
Confidence 888888899999999999999999999999999999999987 34444 899999999999999888999999
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
+.|+.|++||+++.+ ..+..+.+|.-.|..+.|||....+||+++.|-+++|||...+....+...++.
T Consensus 210 ~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 999999999999877 367888999999999999999888999999999999999997776666555443
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-31 Score=236.89 Aligned_cols=284 Identities=16% Similarity=0.289 Sum_probs=235.8
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCcee--eeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la 213 (502)
..|.+.|.++++.|.+..+++|+.++ +++||.+..+.. .+. +|-.. +. .+++|+--.||.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~Dr---tikIwDlatg~L---kltltGhi~~--------vr----~vavS~rHpYlF 209 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADR---TIKIWDLATGQL---KLTLTGHIET--------VR----GVAVSKRHPYLF 209 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCc---eeEEEEcccCeE---EEeecchhhe--------ee----eeeecccCceEE
Confidence 56899999999999999999999997 779998887653 222 22211 11 133378889999
Q ss_pred EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
+++.|+.|+.|||.. .+....+.||-..|.||+.+|. -..|++|+.|.+++|
T Consensus 210 s~gedk~VKCwDLe~---------------------------nkvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~Rv 261 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEY---------------------------NKVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRV 261 (460)
T ss_pred EecCCCeeEEEechh---------------------------hhhHHHhccccceeEEEecccc-ceeEEecCCcceEEE
Confidence 999999999999974 4455567799999999999998 569999999999999
Q ss_pred EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 373 (502)
||+++...+..+.+|..+|.++.+.|.+ ..+++|+.|++|++||++.++.......|...+.+++.+|. .+.|++++.
T Consensus 262 WDiRtr~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~-e~~fASas~ 339 (460)
T KOG0285|consen 262 WDIRTRASVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK-ENLFASASP 339 (460)
T ss_pred eeecccceEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc-hhhhhccCC
Confidence 9999999999999999999999999988 67999999999999999999988888889999999999996 345666654
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE-Ee--cC---
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA-SR--NP--- 447 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~-~~--~~--- 447 (502)
..|+.|++..+ ..+..+.+|..-|++++.+.++ ++++|+..|.+.+||.+++...... +. .+
T Consensus 340 -dnik~w~~p~g---------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~ 407 (460)
T KOG0285|consen 340 -DNIKQWKLPEG---------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE 407 (460)
T ss_pred -ccceeccCCcc---------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccc
Confidence 46899999887 6677799999999999999864 8999999999999999987521111 11 11
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
....|++.+|...|. .|++|..|.+|++|.-.
T Consensus 408 sEagI~as~fDktg~-rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 408 SEAGIFASCFDKTGS-RLITGEADKTIKMYKED 439 (460)
T ss_pred cccceeEEeecccCc-eEEeccCCcceEEEecc
Confidence 134589999999998 59999999999999753
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-30 Score=251.90 Aligned_cols=322 Identities=18% Similarity=0.291 Sum_probs=251.5
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEec
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
...|.+++|+|+|+++|+|+.. .++||..-.......+.++.|..-...+ ..++.| +.|.++|++|+
T Consensus 96 k~~v~~i~fSPng~~fav~~gn----~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~W-------s~DSr~l~~gs 164 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGN----LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDW-------SDDSRLLVTGS 164 (893)
T ss_pred cCccceEEECCCCcEEEEEecc----eeEEEecCcchhcccCcceEeeeecCCccceeEEEe-------ccCCceEEecc
Confidence 3579999999999999999866 4788876544332334444443333333 357777 78999999999
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchh--------------------------hhhh-cccc-----------------
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEE--------------------------KKKK-KSKK----------------- 252 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~--------------------------~~~~-~~~~----------------- 252 (502)
.|-.++||.++..+.+.+....|-.+.- ...+ ...+
T Consensus 165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~ 244 (893)
T KOG0291|consen 165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG 244 (893)
T ss_pred ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence 9999999999877765544333321111 0000 0000
Q ss_pred -------CCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEE
Q 010769 253 -------GKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQIL 325 (502)
Q Consensus 253 -------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 325 (502)
.-.+..++.+......|++.+|++. .++|++|-..|...+|.+..-.+++.+.-...+|..+.|+..| ..|
T Consensus 245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWi 322 (893)
T KOG0291|consen 245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWI 322 (893)
T ss_pred hhhhcceEEEEEEeeeecccccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEE
Confidence 0011112333444478999999998 7899999999999999999999999998778899999999999 666
Q ss_pred EEEEC-CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC
Q 010769 326 LSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404 (502)
Q Consensus 326 ~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~ 404 (502)
+.|+. =|.+.||+.++...+....+|...+++++++|+|. ++++|+.||.|++||.+.+ -+..++..|+
T Consensus 323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg---------fC~vTFteHt 392 (893)
T KOG0291|consen 323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG---------FCFVTFTEHT 392 (893)
T ss_pred EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc---------eEEEEeccCC
Confidence 66654 58999999999888887888999999999999986 8999999999999999987 8899999999
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC---------e---------------------------------eEE
Q 010769 405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ---------P---------------------------------SCI 442 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~---------~---------------------------------~~~ 442 (502)
+.|+.+.|+..+ +.|++.|.||+|+.||+...+ + ..+
T Consensus 393 s~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 393 SGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred CceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 999999999998 999999999999999986531 0 123
Q ss_pred EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
-.+.+|.++|.+++|+|.+. +|++|+.|.+|++||+-.....
T Consensus 472 DiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred ehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCce
Confidence 33468999999999999999 7999999999999999766433
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-30 Score=221.04 Aligned_cols=281 Identities=17% Similarity=0.267 Sum_probs=221.9
Q ss_pred ccccccCcccceeccCCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeee-cc
Q 010769 109 GVEIFGKGLGDLYYASNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH-HI 187 (502)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~-~~ 187 (502)
.+.+|....|..+....- .+..|+.+.+.|++++||+|+.. ++++|.++........-|..| ..
T Consensus 21 TIRfWqa~tG~C~rTiqh-----------~dsqVNrLeiTpdk~~LAaa~~q----hvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQH-----------PDSQVNRLEITPDKKDLAAAGNQ----HVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred eeeeeehhcCeEEEEEec-----------CccceeeEEEcCCcchhhhccCC----eeEEEEccCCCCCceeEEeccCCc
Confidence 455565555555443221 35689999999999999999877 478887776665222222233 22
Q ss_pred ccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc
Q 010769 188 IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD 267 (502)
Q Consensus 188 ~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 267 (502)
+ ..+ +|..+|+++++|+.||+++|||+....+.+ ...|..
T Consensus 86 V-----taV-------gF~~dgrWMyTgseDgt~kIWdlR~~~~qR----------------------------~~~~~s 125 (311)
T KOG0315|consen 86 V-----TAV-------GFQCDGRWMYTGSEDGTVKIWDLRSLSCQR----------------------------NYQHNS 125 (311)
T ss_pred e-----EEE-------EEeecCeEEEecCCCceEEEEeccCcccch----------------------------hccCCC
Confidence 2 233 336789999999999999999997533221 225789
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC--
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-- 344 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-- 344 (502)
+|+++..+|+ ..-|++|..+|.|++||+....+.+.+. .....|+++...|+| .+++++...|++++|++-....
T Consensus 126 pVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 126 PVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccc
Confidence 9999999999 6689999999999999999887776663 345689999999999 8999999999999999876443
Q ss_pred ----ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769 345 ----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 345 ----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
+..+..|.+.+..+.++|++. ++++++.|.+++||++... .+.-..+.+|...+..++||.++ .+|
T Consensus 204 ~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~--------~kle~~l~gh~rWvWdc~FS~dg-~Yl 273 (311)
T KOG0315|consen 204 ELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF--------FKLELVLTGHQRWVWDCAFSADG-EYL 273 (311)
T ss_pred cceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc--------eeeEEEeecCCceEEeeeeccCc-cEE
Confidence 223456788899999999876 8999999999999999876 36667889999999999999998 999
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+||+.|+.+++|++..++ .+....+|.....|++..
T Consensus 274 vTassd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeecccccCc--eeeecCCcccccEEEEee
Confidence 999999999999999998 577778887777777653
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=239.94 Aligned_cols=244 Identities=21% Similarity=0.300 Sum_probs=220.2
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
++|+-..+++++.|++|++||+.+++. ...++||++.|.+|+|+.. +.+|++
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~---------------------------e~~LrGHt~sv~di~~~a~-Gk~l~t 167 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGEL---------------------------ERSLRGHTDSVFDISFDAS-GKYLAT 167 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhh---------------------------hhhhhccccceeEEEEecC-ccEEEe
Confidence 378888999999999999999987544 3456799999999999998 579999
Q ss_pred EecCCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769 285 ASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 285 gs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 363 (502)
+|.|-.+++||..+ .++++.+.+|.-.|.++.|-|.| .++++++.|.+|+.|++.++-++..+.+|...|..++.+.+
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD 246 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence 99999999999987 56788888999999999999999 99999999999999999999998888899999999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC--------------CCCEEEEEeCCCcE
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------------VPNLLATGSTDKMV 429 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------------~~~~l~t~s~dg~i 429 (502)
|. ++++++.|.+|++|-+.+. .+...+..|..+|-+++|.|. +..++++++.|++|
T Consensus 247 Gt-i~As~s~dqtl~vW~~~t~---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 247 GT-IIASCSNDQTLRVWVVATK---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred ee-EEEecCCCceEEEEEeccc---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 75 8999999999999999986 667778889999999999773 22589999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
++||+.++. ++.++.+|...|..++|+|.|+| |+++..|+++++||+++.+++.....
T Consensus 317 k~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 317 KIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred EEEeccCCe--EEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceeeeccCC
Confidence 999999997 89999999999999999999997 88889999999999999999876653
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=244.32 Aligned_cols=231 Identities=26% Similarity=0.462 Sum_probs=204.1
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
.+|+++ +...+++|..|.+|+|||.+... ....+.||++.|.||
T Consensus 200 VYClQY---------DD~kiVSGlrDnTikiWD~n~~~---------------------------c~~~L~GHtGSVLCL 243 (499)
T KOG0281|consen 200 VYCLQY---------DDEKIVSGLRDNTIKIWDKNSLE---------------------------CLKILTGHTGSVLCL 243 (499)
T ss_pred eEEEEe---------cchhhhcccccCceEEeccccHH---------------------------HHHhhhcCCCcEEee
Confidence 367765 67789999999999999987633 334567999999999
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc---cceE
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS---GFKW 349 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~ 349 (502)
.|.. .+|++||.|.+|+|||+++++++.++.+|...|..+.|+. .++++++.|.++.+||+.++... ....
T Consensus 244 qyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLv 317 (499)
T KOG0281|consen 244 QYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLV 317 (499)
T ss_pred eccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHh
Confidence 9964 3999999999999999999999999999999999999985 58999999999999999987643 2355
Q ss_pred eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
+|...|+.+.|+. .++++++.|.+|++|++.+. ..+.++.+|...|.|+.+. .+++++||.|.+|
T Consensus 318 GHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~---------efvRtl~gHkRGIAClQYr---~rlvVSGSSDntI 382 (499)
T KOG0281|consen 318 GHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTC---------EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTI 382 (499)
T ss_pred hhhhheeeecccc---ceEEEecCCceEEEEeccce---------eeehhhhcccccceehhcc---CeEEEecCCCceE
Confidence 8889999999974 38999999999999999997 8899999999999999887 3899999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
++||+..+. ++..+.+|..-|.++.|... .+++|+.||+|+|||+.++...
T Consensus 383 Rlwdi~~G~--cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 383 RLWDIECGA--CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred EEEeccccH--HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCC
Confidence 999999998 78888999999999999765 4899999999999999887654
No 43
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=241.87 Aligned_cols=285 Identities=22% Similarity=0.323 Sum_probs=225.7
Q ss_pred CCccccccccccCCCce-EEEEEecCCcceeEEEEEecCCCCCCc-eeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769 137 EDSEDLEDMTINPNDAV-IVCARNEDDVSHLEVYILEESDGGDPN-LYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~-l~~~~~~~~~~~l~v~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~ 214 (502)
++.+.|.+++|+|...+ +|++++ .++-+|........+ +....+.. .. +.|-.||.+||+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S------~rvqly~~~~~~~~k~~srFk~~v-----~s-------~~fR~DG~Llaa 85 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS------VRVQLYSSVTRSVRKTFSRFKDVV-----YS-------VDFRSDGRLLAA 85 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc------cEEEEEecchhhhhhhHHhhccce-----eE-------EEeecCCeEEEc
Confidence 34678999999998654 333332 255555443321111 11222211 22 223579999999
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
|...|.|+|||+.+ +.....+.+|+.+|..+.|+|.+..+|++|+.|+.+++|
T Consensus 86 GD~sG~V~vfD~k~---------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 86 GDESGHVKVFDMKS---------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred cCCcCcEEEecccc---------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence 99999999999643 345556779999999999999988999999999999999
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 374 (502)
|+.+......+.+|++.|.|.+|+|..+.+++||++||.|++||+|..........|..+|.++.+-|.|. ++++++ .
T Consensus 139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAg-G 216 (487)
T KOG0310|consen 139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAG-G 216 (487)
T ss_pred EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcC-C
Confidence 99999887789999999999999999888999999999999999999876666788999999999999765 455544 5
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 454 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 454 (502)
..|++||+-++ .+.+..+..|...|+|+++..++ ..|++|+-|+.|++||+.+.+ .+.... -.++|.+
T Consensus 217 n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K--vv~s~~-~~~pvLs 284 (487)
T KOG0310|consen 217 NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK--VVHSWK-YPGPVLS 284 (487)
T ss_pred CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccceE--EEEeee-cccceee
Confidence 68999999987 46666666799999999999987 999999999999999987776 333333 4588999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 455 VAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 455 ~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
++.+|++. .++.|..+|.+.+=+...
T Consensus 285 iavs~dd~-t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 285 IAVSPDDQ-TVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEecCCCc-eEEEecccceeeeehhhc
Confidence 99999998 588899999887764443
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=6.6e-32 Score=237.70 Aligned_cols=289 Identities=16% Similarity=0.272 Sum_probs=241.7
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeec--cccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
....++|..|+|+|++|++|+.++ .++||.|-.+.-+...-|.-.+ .+.....+|+.+ |.+...||+|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDG---FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-------SRDsEMlAsG 281 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDG---FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-------SRDSEMLASG 281 (508)
T ss_pred cccchhheeeCCCCceEeeccccc---eeeeehhccchhhhhhhhhhhcceeecccceEEEee-------cccHHHhhcc
Confidence 456789999999999999999998 8899999876543222222211 123344478766 8899999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.||.|+||.+.+++++..+ -..|+..|+|++|+.++ ..++++|.|.++++.-
T Consensus 282 sqDGkIKvWri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHG 334 (508)
T ss_pred CcCCcEEEEEEecchHHHHh--------------------------hhhhccCeeEEEEccCc-chhhcccccceEEEec
Confidence 99999999999988776542 23799999999999994 5788999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--ecCCeEEEEeCCCCCCEEEEEeC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~ 373 (502)
+.+|+++..|++|++.|+...|.++| +.+++++.||+|++|+..+..+...+.. ...+|.++..-|.++..++++..
T Consensus 335 lKSGK~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr 413 (508)
T KOG0275|consen 335 LKSGKCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR 413 (508)
T ss_pred cccchhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC
Confidence 99999999999999999999999999 8999999999999999999888764443 34568899998988889999999
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEEEecC---CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 450 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 450 (502)
.++|++.++.. +.+.++... .+...+...+|.| .++++.+.|+.++.|.+.+++ +..++..|..
T Consensus 414 sntv~imn~qG----------QvVrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~--LE~tl~VhEk 480 (508)
T KOG0275|consen 414 SNTVYIMNMQG----------QVVRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGK--LERTLPVHEK 480 (508)
T ss_pred CCeEEEEeccc----------eEEeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCc--eeeeeecccc
Confidence 99999999874 556666433 3456677789998 899999999999999999998 5667777888
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 451 AVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 451 ~v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
.|..++-+|..+ +||+-+.||.+++|.
T Consensus 481 dvIGl~HHPHqN-llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQN-LLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccc-hhhhhcccchhhhcC
Confidence 899999999988 799999999999995
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=1.7e-30 Score=260.39 Aligned_cols=250 Identities=26% Similarity=0.421 Sum_probs=212.7
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
.|+++|++|++++.++.|++|++..... .....+.+|...|.+++|+|+ +.+++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------~~~~~l~~h~~~v~~~~fs~d-~~~l~ 219 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------NLLRELSGHTRGVSDVAFSPD-GSYLL 219 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccc-------------------------hhhccccccccceeeeEECCC-CcEEE
Confidence 3489999999999999999999854221 122234689999999999999 55999
Q ss_pred EEecCCcEEEEEC-CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 284 SASADKQVKIWDV-AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 284 sgs~Dg~v~vwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
+|+.|++|+|||+ ..+.+++++.+|...|++++|+|.+ +++++|+.|++|+|||++++.....+..|...|++++|++
T Consensus 220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 9999999999999 5568999999999999999999999 9999999999999999999888888889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
++. ++++++.||.|++||+.++.. .++..+..+... ++++.|+|++ .+|++++.|+.+++||+....
T Consensus 299 d~~-~l~s~s~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~-- 367 (456)
T KOG0266|consen 299 DGN-LLVSASYDGTIRVWDLETGSK-------LCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK-- 367 (456)
T ss_pred CCC-EEEEcCCCccEEEEECCCCce-------eeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc--
Confidence 876 788889999999999998721 034556655554 9999999998 999999999999999999887
Q ss_pred EEEEecCCCC---CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 441 CIASRNPKAG---AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 441 ~~~~~~~~~~---~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
+.....+|.. .+.+...++.+.+ +.+|+.|+.|++|++.++..+.+.-++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHS 421 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCC
Confidence 4555556655 4455566788884 9999999999999999988887777773
No 46
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.7e-30 Score=247.73 Aligned_cols=280 Identities=22% Similarity=0.374 Sum_probs=230.8
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I 221 (502)
.+=+.|+ ..+.||+|... .||.|+...+ .+...++.. ...++++.| +++|.+||+|..+|.|
T Consensus 180 ~nlldWs-s~n~laValg~------~vylW~~~s~---~v~~l~~~~-~~~vtSv~w-------s~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQ------SVYLWSASSG---SVTELCSFG-EELVTSVKW-------SPDGSHLAVGTSDGTV 241 (484)
T ss_pred hhHhhcc-cCCeEEEEecc------eEEEEecCCC---ceEEeEecC-CCceEEEEE-------CCCCCEEEEeecCCeE
Confidence 4556777 66788888655 7888888776 333222222 555678888 7899999999999999
Q ss_pred EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCC-cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGS-HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300 (502)
Q Consensus 222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~ 300 (502)
.|||...... ...+.+ |...|-+|+|+. ..+.+|+.++.|..+|++..+
T Consensus 242 ~iwD~~~~k~---------------------------~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 242 QIWDVKEQKK---------------------------TRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred EEEehhhccc---------------------------cccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence 9999864222 222334 999999999994 489999999999999999887
Q ss_pred eeEE-eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE--eCCCeE
Q 010769 301 CNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS--LEDGTI 377 (502)
Q Consensus 301 ~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~--~~dg~i 377 (502)
.... +.+|...|..+.|++++ .+|++|+.|+.+.|||............|.+.|.+++|+|....+|++| +.|++|
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 6555 88999999999999999 9999999999999999988888888889999999999999998899987 479999
Q ss_pred EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE-eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
++||+.++ ..+..+. ..+.|++|.|++....++.+. ..++.|.||++.+.+ .+..+.+|...|..++
T Consensus 371 ~fwn~~~g---------~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 371 KFWNTNTG---------ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLA 438 (484)
T ss_pred EEEEcCCC---------cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEE
Confidence 99999986 4444443 467899999999874555553 347789999999876 6888999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 457 FSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 457 ~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
++|||.+ +++|+.|.++++|++-...
T Consensus 439 ~SPdg~~-i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 439 LSPDGET-IVTGAADETLRFWNLFDER 464 (484)
T ss_pred ECCCCCE-EEEecccCcEEeccccCCC
Confidence 9999995 9999999999999997753
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=256.28 Aligned_cols=264 Identities=20% Similarity=0.305 Sum_probs=197.6
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCC--------------------CceeeeC-Ccchh-----------h-hhhccc
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEV--------------------QPHVILG-GIDEE-----------K-KKKKSK 251 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~--------------------~~~~~l~-~~~~~-----------~-~~~~~~ 251 (502)
||++|+|||+||.|+.|+||.+-..... .|...-. ..... . ......
T Consensus 275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~ 354 (712)
T KOG0283|consen 275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA 354 (712)
T ss_pred eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence 3999999999999999999998541100 0000000 00000 0 000000
Q ss_pred cCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC
Q 010769 252 KGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331 (502)
Q Consensus 252 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 331 (502)
..-..++...+.||.+.|++|+|+.+ ++|+|+|.|.||+||++....|++.|. |.+.|+|++|+|...++|++|+.|
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred ccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence 00123445567899999999999988 589999999999999999999999997 999999999999998999999999
Q ss_pred CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC------CC
Q 010769 332 RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DK 405 (502)
Q Consensus 332 g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h------~~ 405 (502)
|.|+||++...+... -.....-|++++|.|+|. ..++|+.+|.+++|++...+. ..-..+..| .+
T Consensus 432 ~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~-------~~~~~I~~~~~Kk~~~~ 502 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKL-------VSDFHIRLHNKKKKQGK 502 (712)
T ss_pred cceEEeecCcCeeEe-ehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeE-------EEeeeEeeccCccccCc
Confidence 999999998765443 234557899999999976 899999999999999987632 111112112 23
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
.|+++.|.|..+..|++.+.|..|+|||.+...+.+.+.-......-...+|+.||.| |++++.|..|+||++..
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCC
Confidence 7999999998777788888999999999988775444332223344567899999997 77888999999999843
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.7e-31 Score=249.20 Aligned_cols=239 Identities=20% Similarity=0.342 Sum_probs=214.8
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|...+++++-.+|.|.|||.++...+..+ .-..-+|.+..|-+- .+++++|
T Consensus 22 HPtePw~la~LynG~V~IWnyetqtmVksf---------------------------eV~~~PvRa~kfiaR-knWiv~G 73 (794)
T KOG0276|consen 22 HPTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------EVSEVPVRAAKFIAR-KNWIVTG 73 (794)
T ss_pred CCCCceEEEeeecCeeEEEecccceeeeee---------------------------eecccchhhheeeec-cceEEEe
Confidence 788999999999999999999875544432 234567888899887 7899999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceEeecCCeEEEEeCCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~p~~ 364 (502)
+.|..|+||+.+++..++.|..|.+-|.|++.||.. .++++++.|-+|++||....-. ...+.+|..-|.+++|+|..
T Consensus 74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred cCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC
Confidence 999999999999999999999999999999999999 7899999999999999987643 44456888999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC-CCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-PNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
.+.|++++-|++|++|.+... .+.+++.+|...|+|+.|-+-| .-+|+||+.|.+|+|||..+.. |+.
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--CV~ 221 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--CVQ 221 (794)
T ss_pred ccceeeeeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--HHH
Confidence 999999999999999999986 8899999999999999999854 2499999999999999999987 899
Q ss_pred EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
++.+|...|..+.|+|.-+ ++++|+.||+++||+..+-++-
T Consensus 222 TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred HhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehh
Confidence 9999999999999999999 7999999999999999886654
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-30 Score=257.16 Aligned_cols=254 Identities=19% Similarity=0.356 Sum_probs=222.3
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
++|+|...+++++--.|.|++||..- ......+..|.++|..+.|+|. +.++
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM---------------------------~tli~rFdeHdGpVRgv~FH~~-qplF 66 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRM---------------------------GTLIDRFDEHDGPVRGVDFHPT-QPLF 66 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhh---------------------------hhHHhhhhccCCccceeeecCC-CCeE
Confidence 34589999999999999999999864 3444567789999999999999 6699
Q ss_pred EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
+||+.|..|+||+..+.+|+.++.+|-+.|..+.||+.- ..++++|.|.+|+||+..+.+++....+|...|.|.+|+|
T Consensus 67 VSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred EecCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence 999999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCC--------------------CCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS--------------------QQSSFTLHAHDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~~~~~~h~~~v~~l~~sp~~~~~l~t 422 (502)
... ++++++-|.+|++||+.........+. ....+.+.+|...|+-++|+|.- -++++
T Consensus 146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVS 223 (1202)
T KOG0292|consen 146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVS 223 (1202)
T ss_pred ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEe
Confidence 754 899999999999999865432111100 11234567999999999999987 79999
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
|+.|..|++|.+...+...+-+..+|.+.|.++-|+|... ++.+.|.|++|+|||+...+.+...
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence 9999999999999887767778889999999999999888 7999999999999999988877554
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-30 Score=252.88 Aligned_cols=288 Identities=16% Similarity=0.284 Sum_probs=235.9
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
....|..++|||....|+++--.+ .+++|.|.-... ..-+-.|+.++. .+. |+|.+.++++|+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG---~IQlWDYRM~tl--i~rFdeHdGpVR----gv~-------FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSG---VIQLWDYRMGTL--IDRFDEHDGPVR----GVD-------FHPTQPLFVSGGD 71 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCc---eeeeehhhhhhH--HhhhhccCCccc----eee-------ecCCCCeEEecCC
Confidence 456789999999999999998887 789999976542 122345666553 333 3899999999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
|-.|+||++.. .+....+.||-+-|..+.|++. -.+++|+|.|.+|+||+..
T Consensus 72 DykIkVWnYk~---------------------------rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 72 DYKIKVWNYKT---------------------------RRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred ccEEEEEeccc---------------------------ceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEecc
Confidence 99999999975 4445567799999999999999 4599999999999999999
Q ss_pred CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-----------------------------cce
Q 010769 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-----------------------------GFK 348 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------------------------~~~ 348 (502)
+++++..+.+|+-.|.|.+|+|.. .+++++|.|.+|++||+..-+.. ...
T Consensus 124 sr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 124 SRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred CCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999999999999988 89999999999999998631110 112
Q ss_pred EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
.+|...|+-++|+|.-+ ++++|+.|..|++|.+...+. --+-+..+|...|+++-|+|.. .++++.|.|++
T Consensus 203 EGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDks 273 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKS 273 (1202)
T ss_pred cccccccceEEecCCcc-eEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc-ceeEecCCCcc
Confidence 35667899999999877 899999999999999876421 2345567999999999999987 89999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
|+|||+...+ .+.++....+..+.++.+|..+ |+|+ +.|+.+.||.+....
T Consensus 274 irVwDm~kRt--~v~tfrrendRFW~laahP~lN-LfAA-gHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 274 IRVWDMTKRT--SVQTFRRENDRFWILAAHPELN-LFAA-GHDSGMIVFKLERER 324 (1202)
T ss_pred EEEEeccccc--ceeeeeccCCeEEEEEecCCcc-eeee-ecCCceEEEEEcccC
Confidence 9999999877 5666665668899999999998 5664 566667777776433
No 51
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.6e-29 Score=249.81 Aligned_cols=255 Identities=18% Similarity=0.206 Sum_probs=192.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
++++..+++++.+.....|+...+..+.+....| +.......+.+|.+.|++++|+|..+++|++|
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G--------------~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG--------------KLASNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccc--------------cCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 4566666777777777788765432222211111 11111234568999999999999436799999
Q ss_pred ecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769 286 SADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 286 s~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 358 (502)
+.|++|++||+.++ .++..+.+|...|.+++|+|.+.++|++|+.|++|++||++++........|...|.++
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 99999999999765 35678899999999999999876799999999999999999887665555688899999
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC-eeEEEEcCCCCCEEEEEe----CCCcEEEEE
Q 010769 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISYNPLVPNLLATGS----TDKMVKLWD 433 (502)
Q Consensus 359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~sp~~~~~l~t~s----~dg~i~vwd 433 (502)
+|+|++. +|++++.||.|++||++++ ..+..+.+|.+. +..+.|.+.+ ..|++++ .|+.|++||
T Consensus 175 a~spdG~-lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 175 EWNLDGS-LLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred EEECCCC-EEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEe
Confidence 9999875 8999999999999999986 667788888765 4567889887 5555543 478999999
Q ss_pred CCCCCeeEEEEec-CCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCccccc
Q 010769 434 LSNNQPSCIASRN-PKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 434 ~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~~~~~ 487 (502)
+++... .+.... .+...+....|++++.+ |++|+ .|+.|++||+.++..+..
T Consensus 244 lr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 244 TRKMAS-PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCCCC-ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEE
Confidence 987642 222222 23345667789999985 55555 699999999998886644
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.8e-29 Score=268.15 Aligned_cols=253 Identities=20% Similarity=0.318 Sum_probs=205.1
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
..+++| +|+|++||+|+.|+.|+||++........ ........+ .+...|.++
T Consensus 486 V~~i~f-------s~dg~~latgg~D~~I~iwd~~~~~~~~~-------------------~~~~~~~~~-~~~~~v~~l 538 (793)
T PLN00181 486 VCAIGF-------DRDGEFFATAGVNKKIKIFECESIIKDGR-------------------DIHYPVVEL-ASRSKLSGI 538 (793)
T ss_pred EEEEEE-------CCCCCEEEEEeCCCEEEEEECCccccccc-------------------ccccceEEe-cccCceeeE
Confidence 356666 79999999999999999999853210000 000011112 234679999
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 352 (502)
+|++..+.+|++++.||+|+|||+.+++.+..+.+|...|++++|+|.++.+|++|+.||+|++||+++...... ....
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~~~ 617 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IKTK 617 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-EecC
Confidence 999876779999999999999999999999999999999999999985448999999999999999998766543 3345
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
..+.++.|++..+.++++|+.||.|++||+++. ..++..+.+|...|+++.|.+ + .+|++++.|++|++|
T Consensus 618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~--------~~~~~~~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiW 687 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP--------KLPLCTMIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLW 687 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--------CccceEecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEE
Confidence 679999997665668999999999999999876 245677889999999999974 4 789999999999999
Q ss_pred ECCCCC----eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 433 DLSNNQ----PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 433 d~~~~~----~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
|++... ...+..+.+|...+.+++|+|++. +|++|+.|+.|++|+......
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~ 742 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMP 742 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCc
Confidence 997531 135677889999999999999998 599999999999999876543
No 53
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=236.12 Aligned_cols=303 Identities=17% Similarity=0.230 Sum_probs=226.4
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|...|.++.+.|.|-.+++|+.+. .++.|.|..... .+. +...+.|.-...+.- +.||+.|..|++.
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy---~v~~wDf~gMda---s~~-~fr~l~P~E~h~i~s----l~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDY---TVKFWDFQGMDA---SMR-SFRQLQPCETHQINS----LQYSVTGDQILVV 232 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccc---eEEEEecccccc---cch-hhhccCcccccccce----eeecCCCCeEEEE
Confidence 34778899999999999999999986 678888876654 221 122222222222221 2237889888888
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+....++|+|-+....++. .+......-....+||...++|.+|+|.....+++++.||++++|+
T Consensus 233 sg~aqakl~DRdG~~~~e~---------------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEF---------------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred ecCcceeEEccCCceeeee---------------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 8889999999875433321 1222334445567799999999999999889999999999999999
Q ss_pred CCCCee-eEEe-----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc---ceEeecC--CeEEEEeCCCC
Q 010769 296 VAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAA--DVESLAWDPHA 364 (502)
Q Consensus 296 ~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~v~~v~~~p~~ 364 (502)
+...+. ...| .+..-++++++|++++ .+|++|+.||.|.+|+.+...... ....|.. .|+||.|+++|
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 986542 2233 2344578999999999 789999999999999986543322 2234555 89999999987
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEeC------CCcEEEEECCC
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGST------DKMVKLWDLSN 436 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~------dg~i~vwd~~~ 436 (502)
. +|++-+.|+++++||+|+. .+++....+- ..+-+.++|||+. .+|+||+. .|++.+||..+
T Consensus 377 ~-~LlSRg~D~tLKvWDLrq~--------kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 377 N-YLLSRGFDDTLKVWDLRQF--------KKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred c-hhhhccCCCceeeeecccc--------ccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccc
Confidence 6 8999999999999999998 3566555443 3456789999997 89999864 46799999888
Q ss_pred CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
.. .+..+.-....|..+.|+|.-+. |.+|+.||+++||=
T Consensus 447 ~d--~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 447 LD--TVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYY 485 (641)
T ss_pred ee--eEEEecCCCceEEEEeecchhhh-eeeecCCCceEEEE
Confidence 76 56666666788999999999886 55677788888753
No 54
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.8e-29 Score=232.36 Aligned_cols=267 Identities=21% Similarity=0.372 Sum_probs=214.5
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCC---------ceeeeeccccCCCcceeeeecCCCCCCC
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDP---------NLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~~w~~~~~~~s~ 207 (502)
.|+++|+.+.+.|+...|+++...+ +.+.||.|........ .|.+|+.- + +.+.|.. .
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~--~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e---g--~glsWn~------~ 188 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSS--GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE---G--YGLSWNR------Q 188 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCC--CCEEEEEeccCCCcccccccCCCceEEEeeccc---c--ccccccc------c
Confidence 3889999999999999888876665 2456666654443221 45566651 2 3466631 2
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
..-+|++|+.|+.|++||+...... .+....+..+.+|.+.|..++|++....+|++++.
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~--------------------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKE--------------------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccC--------------------CccccceEEeecCCcceehhhccccchhhheeecC
Confidence 4567999999999999999754321 12244555677999999999999998999999999
Q ss_pred CCcEEEEECC--CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEeecCCeEEEEeCCCC
Q 010769 288 DKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 288 Dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~v~~~p~~ 364 (502)
|+.+.|||++ +.++.+...+|++.|.|++|+|.+..+|++|+.|++|++||+|..... ..+..|...|.+|.|+|+.
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 9999999999 567777888999999999999999899999999999999999986654 3345788999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCC-----CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDP-----DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
..+|++++.|+.+.+||+....... ......+++.-.+|...|+.+.|+|+.+..|++.+.|+.+.||.+..
T Consensus 329 etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999999999997653321 11224566888899999999999999999999999999999999864
No 55
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.9e-28 Score=205.66 Aligned_cols=292 Identities=21% Similarity=0.310 Sum_probs=229.8
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---------CCCcee----eeeccccCCCcceeeeecCCCC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---------GDPNLY----VHHHIIIPAFPLCMAWLDCPLK 204 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---------~~~~l~----~~~~~~~~~~~~~~~w~~~~~~ 204 (502)
+...|.+++|+|.|.+.++|++.. +++|.-|..-.. ..+.+. .||... .+|++|
T Consensus 31 dsqairav~fhp~g~lyavgsnsk---t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs----iyc~~w------ 97 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSK---TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS----IYCTAW------ 97 (350)
T ss_pred chhheeeEEecCCCceEEeccCCc---eEEEEccccccCcccccccccCCCeEEeeeccccCcc----EEEEEe------
Confidence 456899999999999999999886 678877754332 111222 344333 489999
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC---CCcE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNI 281 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~ 281 (502)
||.|.+||+|+.|.+|++.-++...+.. ......+.-|.+.|..++|..+ ++.+
T Consensus 98 -s~~geliatgsndk~ik~l~fn~dt~~~----------------------~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 98 -SPCGELIATGSNDKTIKVLPFNADTCNA----------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred -cCccCeEEecCCCceEEEEecccccccc----------------------cCcceeeeecCCceeeeEEecCCCcCceE
Confidence 7899999999999999998765322211 1122234569999999999643 4557
Q ss_pred EEEEec-CCcEEEEECCCCeeeEEeccCCCCeEEE-EEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-------ec
Q 010769 282 LASASA-DKQVKIWDVAAGKCNLTLEHHTDKVQAV-AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA-------VA 352 (502)
Q Consensus 282 l~sgs~-Dg~v~vwd~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~ 352 (502)
|++++. |..|.+-|..+|+..+.+.+|++.|.++ .|+ + -.+++|+.|.+|++||+|-..++...-. ..
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 887764 6778888999999999999999999987 454 4 7899999999999999998766543221 13
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
+.|.+++..|.|. ++++|..|....+||+|.+ ++++.+..|...|.|+.|+|.. .+|+||+.|..|++-
T Consensus 232 savaav~vdpsgr-ll~sg~~dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a-~yllt~syd~~iklt 300 (350)
T KOG0641|consen 232 SAVAAVAVDPSGR-LLASGHADSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLT 300 (350)
T ss_pred ceeEEEEECCCcc-eeeeccCCCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEe
Confidence 5689999999876 8999999999999999987 8899999999999999999976 999999999999999
Q ss_pred ECCCCC--eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 433 DLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 433 d~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
|+...- ...+.....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 987531 223455567888899999999875 48888999999999764
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.2e-29 Score=214.21 Aligned_cols=239 Identities=26% Similarity=0.444 Sum_probs=200.6
Q ss_pred ceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769 194 LCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
..++| +|. |..||+|+.|..||||++..++......+| -.+|+..|.++
T Consensus 18 W~~aw-------hp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-----------------------d~~hkrsVRsv 67 (312)
T KOG0645|consen 18 WSVAW-------HPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-----------------------DDGHKRSVRSV 67 (312)
T ss_pred EEEEe-------ccCCceEEEeecCCceEEEEecCCCCcEEEEEec-----------------------cccchheeeee
Confidence 45666 566 889999999999999998754443322222 23799999999
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC---Cccc
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST---HSGF 347 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~ 347 (502)
+|+|.+ ++||+||.|.++.||.-..+ +++.++.+|...|.|++|+++| ++|++++.|+.|-||.+.... +...
T Consensus 68 Awsp~g-~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 68 AWSPHG-RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eecCCC-cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 999995 59999999999999986644 6899999999999999999999 999999999999999998543 3455
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
+..|...|..+.|+|... +|++++.|.+|++|.-..... ..++.++.+|...|.+++|+|.| ..|++++.|+
T Consensus 146 L~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~ddd------W~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~ 217 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDD------WECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDG 217 (312)
T ss_pred eccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCC------eeEEEEecCccceEEEEEecCCC-ceEEEecCCc
Confidence 678899999999999754 899999999999998763211 47889999999999999999998 8999999999
Q ss_pred cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
+|+||-+...- ...|...+..+.|. ++ +||+++.|+.|+||.-..
T Consensus 218 tv~Iw~~~~~~------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 218 TVSIWRLYTDL------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESD 262 (312)
T ss_pred ceEeeeeccCc------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecC
Confidence 99999865321 23466889999999 55 699999999999998774
No 57
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.6e-28 Score=246.05 Aligned_cols=229 Identities=22% Similarity=0.305 Sum_probs=180.7
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
|+..+.|++|++.. ......+.+|...|++++|+|..+++|+||+.||+|+||
T Consensus 50 GG~~gvI~L~~~~r---------------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIW 102 (568)
T PTZ00420 50 GGLIGAIRLENQMR---------------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVW 102 (568)
T ss_pred CCceeEEEeeecCC---------------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEE
Confidence 56678888998753 122335568999999999999766799999999999999
Q ss_pred ECCCCe--------eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769 295 DVAAGK--------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 295 d~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 366 (502)
|+.++. ++..+.+|...|.+++|+|.+..+|++++.|++|++||++++.... ...+...|.+++|+|++.
T Consensus 103 Di~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~~~~~V~SlswspdG~- 180 (568)
T PTZ00420 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QINMPKKLSSLKWNIKGN- 180 (568)
T ss_pred ECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEecCCcEEEEEECCCCC-
Confidence 997642 3456788999999999999986677899999999999999877543 334667899999999876
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE-----EEcCCCCCEEEEEeCCC----cEEEEECCC-
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI-----SYNPLVPNLLATGSTDK----MVKLWDLSN- 436 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~~l~t~s~dg----~i~vwd~~~- 436 (502)
+|++++.|+.|++||++++ ..+..+.+|.+.+.+. .|++++ .+|++++.++ +|+|||++.
T Consensus 181 lLat~s~D~~IrIwD~Rsg---------~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQ---------EIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEEEEecCCEEEEEECCCC---------cEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCC
Confidence 7888999999999999987 6677888998765433 345776 7888877764 799999995
Q ss_pred CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
.++.....+..+.+.+......+++. ++++|+.|++|++|++..+.
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence 45555555555556555555555666 68899999999999998764
No 58
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.9e-28 Score=228.90 Aligned_cols=311 Identities=15% Similarity=0.227 Sum_probs=248.0
Q ss_pred CCCCCCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCC
Q 010769 124 SNQMDPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL 203 (502)
Q Consensus 124 ~~~~d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~ 203 (502)
.+-++|.....-.+|...++-..|+|+|-++|+|-..+ .++||.....+ .+..+.-.++.+....+.|
T Consensus 44 r~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG---~vRIWdtt~~~----hiLKnef~v~aG~I~Di~W----- 111 (603)
T KOG0318|consen 44 RNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSG---KVRIWDTTQKE----HILKNEFQVLAGPIKDISW----- 111 (603)
T ss_pred EECCCccceeeeccccceeEEEEeCCCceEEeecCCcC---cEEEEeccCcc----eeeeeeeeeccccccccee-----
Confidence 33344444433467999999999999999999998887 45666655433 4555555566677777888
Q ss_pred CCCCCCCEEEEecCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769 204 KDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 204 ~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
+.+++.|++.+.. |.+.+||- +..+. .+.||...|+++.|-|..+
T Consensus 112 --d~ds~RI~avGEGrerfg~~F~~DS--G~SvG---------------------------ei~GhSr~ins~~~KpsRP 160 (603)
T KOG0318|consen 112 --DFDSKRIAAVGEGRERFGHVFLWDS--GNSVG---------------------------EITGHSRRINSVDFKPSRP 160 (603)
T ss_pred --CCCCcEEEEEecCccceeEEEEecC--CCccc---------------------------eeeccceeEeeeeccCCCc
Confidence 7788877766543 45666664 22222 3458999999999999977
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE---eecCCeE
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADVE 356 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~ 356 (502)
..+++||.|++|.+|.-.--+...+++.|+..|+|+.|+|+| .+|++++.||++.+||-.++.....+. .|.+.|.
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf 239 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF 239 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE
Confidence 889999999999999977677788889999999999999998 999999999999999999988776555 7899999
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC----------------------------------CCCCCCCccEEEec
Q 010769 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD----------------------------------PDSTSQQSSFTLHA 402 (502)
Q Consensus 357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------------------~~~~~~~~~~~~~~ 402 (502)
+++|+|++. .|++++.|.++++||+.+.... .++....++..+.+
T Consensus 240 alsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 240 ALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred EEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc
Confidence 999999876 7999999999999999876430 01111246677889
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
|...|+++..+|++ .+|++|+.||.|.-|+..++.. ....-.+|...|.+++-+..+. |.+.|.|.+|++.++..+
T Consensus 319 HnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~-~~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 319 HNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS-DRLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc-cccccccccceEEEEeecCCCc--EEEEecCCeEEEEecccC
Confidence 99999999999998 9999999999999999998863 2233367899999999988776 677889999999988654
Q ss_pred c
Q 010769 483 A 483 (502)
Q Consensus 483 ~ 483 (502)
.
T Consensus 395 ~ 395 (603)
T KOG0318|consen 395 G 395 (603)
T ss_pred c
Confidence 4
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-30 Score=214.82 Aligned_cols=235 Identities=23% Similarity=0.392 Sum_probs=197.9
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+-+|+|.++++.|.+|++|+.-. ......+.+|...|..++.+.+ ...|++|
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~r---------------------------g~liktYsghG~EVlD~~~s~D-nskf~s~ 77 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLR---------------------------GALIKTYSGHGHEVLDAALSSD-NSKFASC 77 (307)
T ss_pred ccCCCEEEEcCCCceEEeecccc---------------------------cceeeeecCCCceeeecccccc-ccccccC
Confidence 67899999999999999999754 3444567799999999999998 5589999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC--ccceEeecCCeEEEEeCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~v~~~p~ 363 (502)
+.|..|.+||+.+|+.++.|.+|.+.|+.++|+... ..+++|+.|.++++||.|+... ++.+-.....|.++..+.
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~- 155 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE- 155 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-
Confidence 999999999999999999999999999999999988 8999999999999999997654 333445567789998874
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
+.+++|+.||+++.||+|.+. . ...-...+|++++|++++ +++++++.|+++++.|-.+++ ++.
T Consensus 156 --heIvaGS~DGtvRtydiR~G~---------l--~sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk--lL~ 219 (307)
T KOG0316|consen 156 --HEIVAGSVDGTVRTYDIRKGT---------L--SSDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK--LLK 219 (307)
T ss_pred --cEEEeeccCCcEEEEEeecce---------e--ehhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH--HHH
Confidence 479999999999999999872 1 122345789999999998 999999999999999999998 566
Q ss_pred EecCCCCCEE--EEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 444 SRNPKAGAVF--SVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 444 ~~~~~~~~v~--~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
.+.+|...=. .++++.... .+++|+.||.|++||+.....+..
T Consensus 220 sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred Hhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeee
Confidence 6777765433 345555555 589999999999999988877654
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.4e-29 Score=242.03 Aligned_cols=287 Identities=18% Similarity=0.304 Sum_probs=241.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|..+|..++++.+..++++|..+ .++||..+.... ... +...+.+|..+ -|.++++++|
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~----SikiWn~~t~kc---iRT-----i~~~y~l~~~F-------vpgd~~Iv~G 430 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGE----SIKIWNRDTLKC---IRT-----ITCGYILASKF-------VPGDRYIVLG 430 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCC----cEEEEEccCcce---eEE-----eccccEEEEEe-------cCCCceEEEe
Confidence 5689999999999999999998766 478888775543 111 11224466655 4789999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+..|.+.|||+.+...+. ....|.++|++++.+|+ +..+++||.|.+|++||
T Consensus 431 ~k~Gel~vfdlaS~~l~E---------------------------ti~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVE---------------------------TIRAHDGAIWSISLSPD-NKGFVTGSADKTVKFWD 482 (888)
T ss_pred ccCCceEEEEeehhhhhh---------------------------hhhccccceeeeeecCC-CCceEEecCCcEEEEEe
Confidence 999999999998644433 23479999999999999 55899999999999999
Q ss_pred CCC-----C--eeeEEec-----cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769 296 VAA-----G--KCNLTLE-----HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 296 ~~~-----~--~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 363 (502)
+.- + +.+..+. .-...|.|+.++|++ .+|+++-.|.+|++|-+.+-+......+|.-+|.|+..+|+
T Consensus 483 f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D 561 (888)
T KOG0306|consen 483 FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD 561 (888)
T ss_pred EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC
Confidence 741 1 1111111 135789999999999 99999999999999999998888888999999999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
+. ++++|+.|.+|++|-+.-+ .+-.++.+|...|.++.|.|.. .++.|+|.|+.|+-||-.... ++.
T Consensus 562 Sk-livTgSADKnVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe--~iq 628 (888)
T KOG0306|consen 562 SK-LIVTGSADKNVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE--EIQ 628 (888)
T ss_pred cC-eEEeccCCCceEEeccccc---------hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh--hhe
Confidence 76 9999999999999999876 7788899999999999999976 899999999999999987766 788
Q ss_pred EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
.+.+|...|+|++.+|+|.| +++++.|.+|++|.......
T Consensus 629 ~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 629 KLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred eeccchheeeeeEEcCCCCe-EEeccCCceeEeeeccCcce
Confidence 99999999999999999996 88999999999999765433
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.3e-30 Score=237.76 Aligned_cols=253 Identities=18% Similarity=0.266 Sum_probs=207.8
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.++.|. ...+.+|++|++|+.|+||++... ......+.+|..+|..++
T Consensus 218 sai~~f------p~~~hLlLS~gmD~~vklW~vy~~--------------------------~~~lrtf~gH~k~Vrd~~ 265 (503)
T KOG0282|consen 218 SAIQWF------PKKGHLLLSGGMDGLVKLWNVYDD--------------------------RRCLRTFKGHRKPVRDAS 265 (503)
T ss_pred chhhhc------cceeeEEEecCCCceEEEEEEecC--------------------------cceehhhhcchhhhhhhh
Confidence 566664 227999999999999999998631 344556779999999999
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 353 (502)
|++. +..++|+|.|+.|++||+++|+++..|. ....++|+.|+|++.+.|++|+.|+.|+.||+|+++.+...-.|-+
T Consensus 266 ~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 266 FNNC-GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred cccc-CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 9999 5588899999999999999999999986 3567899999999999999999999999999999998877778889
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.|..+.|-+.+. .|++++.++++++|+.+..- ........+.....++..+|++ .++++=+.|+.|.+|.
T Consensus 344 ~i~~i~F~~~g~-rFissSDdks~riWe~~~~v--------~ik~i~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 344 AILDITFVDEGR-RFISSSDDKSVRIWENRIPV--------PIKNIADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFS 413 (503)
T ss_pred heeeeEEccCCc-eEeeeccCccEEEEEcCCCc--------cchhhcchhhccCcceecCCCC-CeehhhccCceEEEEe
Confidence 999999999876 79999999999999999762 2222223334456788899998 8999999999999998
Q ss_pred CCCCCe-eEEEEecCC--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 434 LSNNQP-SCIASRNPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 434 ~~~~~~-~~~~~~~~~--~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+...-. .....+.+| .|.-..+.|||||++ |++|..+|.+.+||.++.+.+...-.+
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccC
Confidence 754321 112234444 355678999999995 999999999999999998888766555
No 62
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.4e-29 Score=233.06 Aligned_cols=291 Identities=23% Similarity=0.317 Sum_probs=221.3
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCc--eeeeecccc-------CCCcceeeeecCCCC
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPN--LYVHHHIII-------PAFPLCMAWLDCPLK 204 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~--l~~~~~~~~-------~~~~~~~~w~~~~~~ 204 (502)
.|.-.+.++.++|++.+++.++.++ +|.-|....+... .+. +...|-.++ ..-.+|++.
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g---~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av------ 210 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDG---TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV------ 210 (479)
T ss_pred cccCcceEEEeeccccceeecCCCc---ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE------
Confidence 4788999999999999999999887 3333433332210 000 000011110 011244443
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|++|+|||+|+.|..|.||+.++.+.+ ..+.+|.+.|.+++|-.. .+.|++
T Consensus 211 -S~Dgkylatgg~d~~v~Iw~~~t~ehv---------------------------~~~~ghr~~V~~L~fr~g-t~~lys 261 (479)
T KOG0299|consen 211 -SSDGKYLATGGRDRHVQIWDCDTLEHV---------------------------KVFKGHRGAVSSLAFRKG-TSELYS 261 (479)
T ss_pred -cCCCcEEEecCCCceEEEecCcccchh---------------------------hcccccccceeeeeeecC-ccceee
Confidence 899999999999999999999874433 346699999999999876 678999
Q ss_pred EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~ 364 (502)
+|.|++|++|+++....+.++.+|.+.|.+|.-...+ +.+.+|+.|+++++|++.... ...+.++.+.+.|++|-.+
T Consensus 262 ~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~- 338 (479)
T KOG0299|consen 262 ASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIND- 338 (479)
T ss_pred eecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEecc-
Confidence 9999999999999999999999999999999988887 777777899999999994433 3335677889999999864
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-c-----------CCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-A-----------HDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~-----------h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
..|++|+.+|.|.+|++.+. +++++.. + +...|++++..|.. .++|+|+.+|.|++|
T Consensus 339 -~HfvsGSdnG~IaLWs~~KK---------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 339 -EHFVSGSDNGSIALWSLLKK---------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLW 407 (479)
T ss_pred -cceeeccCCceEEEeeeccc---------CceeEeeccccccCCccccccccceeeeEecccC-ceEEecCCCCceEEE
Confidence 36999999999999999886 3443332 1 23489999999976 999999999999999
Q ss_pred ECCCC--CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 433 DLSNN--QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 433 d~~~~--~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
-+..+ ....+..+. -.+.|++++|+++|.++++..|....+--|-..
T Consensus 408 ~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 408 KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 99887 223344444 568999999999999878777777666656543
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.2e-28 Score=228.40 Aligned_cols=247 Identities=32% Similarity=0.514 Sum_probs=208.0
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.|+.| +|++++|++|+.+|.|++|++.... ....+..|...+.++.
T Consensus 13 ~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------~~~~~~~~~~~i~~~~ 58 (289)
T cd00200 13 TCVAF-------SPDGKLLATGSGDGTIKVWDLETGE---------------------------LLRTLKGHTGPVRDVA 58 (289)
T ss_pred EEEEE-------cCCCCEEEEeecCcEEEEEEeeCCC---------------------------cEEEEecCCcceeEEE
Confidence 67777 7889999999999999999987432 1223446888899999
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 353 (502)
|+|+ +.+|++++.+|.|++|++.+++.+..+..|...+.++.|++++ .++++++.+|.|++|++++.+.......+..
T Consensus 59 ~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 136 (289)
T cd00200 59 ASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136 (289)
T ss_pred ECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCC
Confidence 9999 4689999999999999999988888898899999999999996 7888888899999999997666554556778
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+.+++|+|++ .++++++.+|.|++||++.. .....+..|...+.++.|+|++ ..+++++.++.|++||
T Consensus 137 ~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d 205 (289)
T cd00200 137 WVNSVAFSPDG-TFVASSSQDGTIKLWDLRTG---------KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWD 205 (289)
T ss_pred cEEEEEEcCcC-CEEEEEcCCCcEEEEEcccc---------ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEE
Confidence 89999999974 46777777999999999875 5677777899999999999987 7888888899999999
Q ss_pred CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
++..+ .+..+..|...+.++.|+|++. ++++++.+|.|++|++.++..+.....
T Consensus 206 ~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 206 LSTGK--CLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred CCCCc--eecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 99876 4555557788999999999976 577777799999999998777665543
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=222.54 Aligned_cols=255 Identities=19% Similarity=0.304 Sum_probs=212.0
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|||+|+||++|+.||.|.|||+.++.... .-+....-.+.-|..+|.|+.|+.+ ..+||+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrK-------------------DLkYQAqd~fMMmd~aVlci~FSRD-sEMlAs 280 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRK-------------------DLKYQAQDNFMMMDDAVLCISFSRD-SEMLAS 280 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhh-------------------hhhhhhhcceeecccceEEEeeccc-HHHhhc
Confidence 49999999999999999999997643211 1112223345568899999999999 669999
Q ss_pred EecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769 285 ASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 363 (502)
|+.||.|+||.+.+|+|++.|. .|+..|+|+.|+.++ ..+++++.|.++++.-+.+++....+.+|.+-|+.+.|.++
T Consensus 281 GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence 9999999999999999999995 899999999999999 78999999999999999999999888999999999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
|. .+++++.||+|++|+..+. .++.++. +...+|+++..-|.++..+++|...++|+|.++...-...
T Consensus 360 G~-~iisaSsDgtvkvW~~Ktt---------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 360 GH-HIISASSDGTVKVWHGKTT---------ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred CC-eEEEecCCccEEEecCcch---------hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 76 7999999999999999987 4444443 4567899999999989999999999999999987543222
Q ss_pred EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
...-....+...++..+|.|.+ +.+.+.|+.++-|.+.+|+.-+.+.-+
T Consensus 430 fsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred eccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeecc
Confidence 2222233456778889999997 777899999999999999876655443
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-28 Score=210.31 Aligned_cols=235 Identities=22% Similarity=0.296 Sum_probs=195.8
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+.+|.+|.+++.|.++.||--..++ ..-.+.||+++|+|+....+ ...|++|
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGe---------------------------rlGty~GHtGavW~~Did~~-s~~liTG 70 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGE---------------------------RLGTYDGHTGAVWCCDIDWD-SKHLITG 70 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCc---------------------------eeeeecCCCceEEEEEecCC-cceeeec
Confidence 7899999999999999999764432 23356699999999999988 6799999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-----CCCcEEEEeCCCCC-------CccceEeecC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARIST-------HSGFKWAVAA 353 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~-------~~~~~~~~~~ 353 (502)
++|.+++|||+.+|+++.+++ ...+|..+.|++.| ++++.+. ..+.|.++|++... +......+.+
T Consensus 71 SAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s 148 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS 148 (327)
T ss_pred cccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc
Confidence 999999999999999999997 57899999999999 6555554 34679999998432 2333445668
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.++.+.|.|-+. ++++|..+|.|.+||++++ ...+.+...|...|+.++++|+. .+++|+|.|.+-++||
T Consensus 149 kit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 149 KITSALWGPLGE-TIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVD 218 (327)
T ss_pred ceeeeeecccCC-EEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-ceEEecccCccceeee
Confidence 899999999876 8999999999999999998 46777778899999999999998 9999999999999999
Q ss_pred CCCCCee-----------------------------------------------------EEEEecCCCCCEEEEEEcCC
Q 010769 434 LSNNQPS-----------------------------------------------------CIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 434 ~~~~~~~-----------------------------------------------------~~~~~~~~~~~v~~~~~spd 460 (502)
+.+.... .+-...+|-++|++++|+|+
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 8763210 12233568899999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCC
Q 010769 461 SPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 461 ~~~llasg~~dg~i~vwd~~~ 481 (502)
|. ..++||.||.|++.-+..
T Consensus 299 Gk-sYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GK-SYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred Cc-ccccCCCCceEEEEEecc
Confidence 99 599999999999986644
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=209.39 Aligned_cols=249 Identities=23% Similarity=0.436 Sum_probs=212.4
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
-.++| +-+|..||+|+.|+++.||+++... ........+|.+.|-.++
T Consensus 24 ~Sv~w-------n~~g~~lasgs~dktv~v~n~e~~r-------------------------~~~~~~~~gh~~svdql~ 71 (313)
T KOG1407|consen 24 HSVAW-------NCDGTKLASGSFDKTVSVWNLERDR-------------------------FRKELVYRGHTDSVDQLC 71 (313)
T ss_pred eEEEE-------cccCceeeecccCCceEEEEecchh-------------------------hhhhhcccCCCcchhhhe
Confidence 45666 5789999999999999999997531 223335568999999999
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 353 (502)
|+|....+|++++.|.+|++||+++++++..+....+ -.-+.|+|+| .++++++.|..|.+.|.|+.+... ......
T Consensus 72 w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-ni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~-~~~~~~ 148 (313)
T KOG1407|consen 72 WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-NINITWSPDG-EYIAVGNKDDRITFIDARTYKIVN-EEQFKF 148 (313)
T ss_pred eCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-ceEEEEcCCC-CEEEEecCcccEEEEEecccceee-hhcccc
Confidence 9999899999999999999999999999998874444 4457899999 899999999999999999876544 445566
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+.-++|+-. ..+|+.....|+|.|...... +++.++.+|.....||.|+|+| ++||+|+.|..+.+||
T Consensus 149 e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 149 EVNEISWNNS-NDLFFLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWD 217 (313)
T ss_pred eeeeeeecCC-CCEEEEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCC-ceEeeccccceeeccC
Confidence 7888899854 457777777899999988865 8999999999999999999999 9999999999999999
Q ss_pred CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+... .|+..+..+.-+|..++|+.+|+ +||+|+.|..|-|=++.+|..+.++...
T Consensus 218 ~~EL--iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 218 VDEL--ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred hhHh--hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEeecc
Confidence 9765 47888888899999999999999 5999999999999999988887665443
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.6e-28 Score=243.83 Aligned_cols=287 Identities=26% Similarity=0.385 Sum_probs=235.5
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
+...+.+.+|+ +..+++++.+. +|.+|...........+..|...+ .+++. ...+.+|++|+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~---tl~~~~~~~~~~i~~~l~GH~g~V-----~~l~~-------~~~~~~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDS---TLHLWDLNNGYLILTRLVGHFGGV-----WGLAF-------PSGGDKLVSGST 269 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCc---eeEEeecccceEEEeeccCCCCCc-----eeEEE-------ecCCCEEEEEec
Confidence 45678888888 77788888775 555555444332111233444333 45544 235899999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
|.+++|||+.++.+.. .+.+|...|.++...+. ++++||.|.+|++|++.
T Consensus 270 D~t~rvWd~~sg~C~~---------------------------~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTH---------------------------SLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVT 319 (537)
T ss_pred CCcEEeEecCCCcEEE---------------------------EecCCCceEEEEEccCc---eEeeccCCceEEEEecc
Confidence 9999999988755543 45689999999998755 78899999999999999
Q ss_pred CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 377 (502)
++.++..+.+|..+|.++..+ + .++++|+.|++|++|++++.++.....+|...|.++.+.+. ..+++|+.|+.|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccce
Confidence 999999999999999999998 4 78999999999999999999999888899999999988764 589999999999
Q ss_pred EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-CCCCEEEEE
Q 010769 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~ 456 (502)
++||+++. .+++..+.+|..-+.++.+.. ++|++++.|++|++||..+++ ++....+ |.+.|..++
T Consensus 395 kvWdl~~~--------~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 395 KVWDLRTK--------RKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALA 461 (537)
T ss_pred EeecCCch--------hhhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCc--eeeeeccCCcccEEEee
Confidence 99999986 368899999999998887763 899999999999999999998 5666666 678899988
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 457 FSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 457 ~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
+. .. .+++++.+|++++||+++++.++..+...
T Consensus 462 ~~--~~-~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 462 LG--KE-EILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred cC--cc-eEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 87 23 58889999999999999999998775554
No 68
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.7e-27 Score=236.41 Aligned_cols=248 Identities=20% Similarity=0.236 Sum_probs=185.4
Q ss_pred ceeeeecCCCCCCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769 194 LCMAWLDCPLKDRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 194 ~~~~w~~~~~~~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
.++.| +| ++++||+|+.|++|+||++....... ........+.+|...|.+|
T Consensus 79 ~~v~f-------sP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------------~~~~~l~~L~gH~~~V~~l 131 (493)
T PTZ00421 79 IDVAF-------NPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------------NISDPIVHLQGHTKKVGIV 131 (493)
T ss_pred EEEEE-------cCCCCCEEEEEeCCCEEEEEecCCCcccc--------------------ccCcceEEecCCCCcEEEE
Confidence 67777 66 78999999999999999997532110 0012334567899999999
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 352 (502)
+|+|.+.++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.......|.
T Consensus 132 ~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 132 SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 9999866799999999999999999999999999999999999999998 899999999999999999887665445555
Q ss_pred CC-eEEEEeCCCCCCEEEEE---eCCCeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEe-CC
Q 010769 353 AD-VESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGS-TD 426 (502)
Q Consensus 353 ~~-v~~v~~~p~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s-~d 426 (502)
+. +..+.|.+.+..++.+| +.++.|++||+++. ..++.....+ ...+....|++++ .+|++++ .|
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~--------~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgD 281 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM--------ASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGE 281 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC--------CCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCC
Confidence 43 45778998766444444 24799999999976 2444444333 3456667789987 7777776 59
Q ss_pred CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
+.|++||+.++++.....+ .+..++..++|.|... +-+ ..--..++|.+...
T Consensus 282 g~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~--~dv-~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWS--LDT-RKCEIARFYALTYH 333 (493)
T ss_pred CeEEEEEeeCCceEEEeec-cCCCCCcceEeccccc--ccc-cceeeeEEEEecCC
Confidence 9999999999875433322 3455788899988643 111 11124567776544
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.8e-28 Score=219.29 Aligned_cols=241 Identities=25% Similarity=0.365 Sum_probs=199.5
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC--CcEEEEEe
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILASAS 286 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~sgs 286 (502)
+.++++|++||.++||+.. .+......||+++|.+++|.-.+ ...|+++|
T Consensus 115 ~~~IltgsYDg~~riWd~~----------------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK----------------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred CceEEEeecCCeeEEEecC----------------------------CceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 8899999999999999986 33444566999999999885432 23699999
Q ss_pred cCCcEEEEECCCCee----eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC---------------------
Q 010769 287 ADKQVKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------------------- 341 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~--------------------- 341 (502)
.|.++++|-++.+.. +..-++|...|.++...+++ ..+++|+.|.+|.||+..+
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 999999999887643 33345999999999999999 8999999999999999321
Q ss_pred ----CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769 342 ----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 342 ----~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
..+.....+|..+|.+|.|++. ..+++++.|.+|+.||+.++ ....++. ....++++.++|..
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg---------~~~~~~~-~~ksl~~i~~~~~~- 312 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETG---------GLKSTLT-TNKSLNCISYSPLS- 312 (423)
T ss_pred cccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecc---------cceeeee-cCcceeEeeccccc-
Confidence 1112234578889999999983 47999999999999999987 4444443 46779999999977
Q ss_pred CEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc-cccccccC
Q 010769 418 NLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA-GISNRFSK 491 (502)
Q Consensus 418 ~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~-~~~~~~~~ 491 (502)
.+|++|+.|..|++||.+++.- ....++.+|.+.|.++.|+|...|+|++|+.|+++++||+++.+ .+..+.+|
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 9999999999999999998753 34567889999999999999999999999999999999999987 66666555
No 70
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=238.92 Aligned_cols=297 Identities=20% Similarity=0.241 Sum_probs=235.2
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeec-cccCCC---cceeeeecCCCCCCCCCCEEEEe
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHH-IIIPAF---PLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~-~~~~~~---~~~~~w~~~~~~~s~~~~~la~g 215 (502)
....++...++-+.|++++.. .++||.++.... .....|. ...+.. ...+.|. .-..++|||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs----~lklyai~~~~~---~~~~~~~~k~kqn~~~S~~DVkW~------~~~~NlIAT~ 106 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS----LLKLYAINPNDF---SEKCNHRFKTKQNKFYSAADVKWG------QLYSNLIATC 106 (839)
T ss_pred cccceEeecCCcceeEEeccc----ceeeEeeCcccC---Ccceeeecccccceeeehhhcccc------cchhhhheee
Confidence 457788888998888888655 689998876654 2222221 111111 1223442 2358999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+..|.|.+||+... ...+....+..|...|+++.|++...++|+|||.||+|++||
T Consensus 107 s~nG~i~vWdlnk~------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 107 STNGVISVWDLNKS------------------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred cCCCcEEEEecCcc------------------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 99999999999731 123444567789999999999999999999999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 374 (502)
++..+...++.+.+..|..+.|+|..++.|+++...|.+++||+|.+... ..+..|.++|.|+.|+|+ ..+|++|+.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence 99999999999899999999999998899999999999999999987654 345689999999999995 5599999999
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAV 452 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v 452 (502)
+.|+|||+.... ..+..++. ...+|.++.|-|..+.+|++++. |-.|+|||++..- +...++..|...+
T Consensus 242 K~vkiWd~t~~~-------~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~~t~~eH~~~v 312 (839)
T KOG0269|consen 242 KMVKIWDMTDSR-------AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPYATFLEHTDSV 312 (839)
T ss_pred ccEEEEeccCCC-------ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccceeeeccCccc
Confidence 999999998753 23444443 45789999999998889999876 7889999998753 4667788899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+.++|....+.+|.+++.||+|..-.+....
T Consensus 313 t~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 313 TGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred cceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 9999977555578999999988766555443
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=209.27 Aligned_cols=277 Identities=16% Similarity=0.291 Sum_probs=216.1
Q ss_pred CccccccccccC-CCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 138 DSEDLEDMTINP-NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p-~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
.++.|.+++|+| .+.++++++.++ ++++|.+..... +.......+.+.++|+.| +.+|+.+++|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~---tVR~wevq~~g~----~~~ka~~~~~~PvL~v~W-------sddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDG---TVRIWEVQNSGQ----LVPKAQQSHDGPVLDVCW-------SDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCC---ceEEEEEecCCc----ccchhhhccCCCeEEEEE-------ccCCceEEeec
Confidence 567899999999 567777888887 568888776532 222233345566799999 78999999999
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCcEEEEE
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWD 295 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd 295 (502)
.|+.+++|||.+++.. ....|..+|.++.|-+.. ...|++||.|++|+.||
T Consensus 92 ~Dk~~k~wDL~S~Q~~----------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVS----------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred cCCceEEEEccCCCee----------------------------eeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 9999999999865322 234699999999998762 23899999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--ceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~ 373 (502)
++...++.++. -.+.|.++..-. .+++++..++.|.+|+++.+.... ......-.++||+..++.. .++.|+-
T Consensus 144 ~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsi 218 (347)
T KOG0647|consen 144 TRSSNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSI 218 (347)
T ss_pred cCCCCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeee
Confidence 99999999887 467788877643 578899999999999998764332 2224556789999988766 4699999
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEEEecCCC---------CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK---------AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
.|.+.+..+..+.. ..-+++..|.. .|++|+|+|.. ..|+|++.||++.+||-.... .+.+
T Consensus 219 EGrv~iq~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~--kLk~ 288 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART--KLKT 288 (347)
T ss_pred cceEEEEecCCCCc-------cCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh--hhhc
Confidence 99999998887522 34455555652 58889999976 899999999999999987665 5667
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~d 471 (502)
...|..+|++.+|+.+|.+...+.|.|
T Consensus 289 s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 289 SETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cCcCCCccceeEecCCCCEEEEEeecc
Confidence 788999999999999999644455544
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.9e-28 Score=202.97 Aligned_cols=280 Identities=18% Similarity=0.213 Sum_probs=218.6
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
+-+.+.|.++.|+-+|++.++++.+. ++++|+--.+. -..-|..|...+ +.. +.+.+...|++|
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdr---tvrLWNp~rg~--liktYsghG~EV----lD~-------~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDR---TVRLWNPLRGA--LIKTYSGHGHEV----LDA-------ALSSDNSKFASC 77 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCc---eEEeecccccc--eeeeecCCCcee----eec-------cccccccccccC
Confidence 34788999999999999999999887 55666543332 123343343222 111 225678889999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.|..|.+||++++.. ...+.+|...|+.++|+.. ...+++||.|.++++||
T Consensus 78 GgDk~v~vwDV~TGkv---------------------------~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKV---------------------------DRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWD 129 (307)
T ss_pred CCCceEEEEEcccCee---------------------------eeecccccceeeEEEecCc-ceEEEeccccceeEEEE
Confidence 9999999999987443 3456799999999999998 67999999999999999
Q ss_pred CCCC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769 296 VAAG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 296 ~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 373 (502)
.++. ++++.+......|.++..+. ..+++|+.||+++.||+|.++... --...+|+|++|++++. ..++++.
T Consensus 130 CRS~s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~n-c~La~~l 203 (307)
T KOG0316|consen 130 CRSRSFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGN-CSLASSL 203 (307)
T ss_pred cccCCCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCC-EEEEeec
Confidence 9865 68888888889999999976 569999999999999999887654 23467899999999876 7889999
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe--eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV--CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA 451 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v--~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 451 (502)
+++|++.|-.++ +.+....+|...- ...+++... ..+++||.||.|++||+.... .+..+..+...
T Consensus 204 ~stlrLlDk~tG---------klL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v 271 (307)
T KOG0316|consen 204 DSTLRLLDKETG---------KLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDET--QISKLSVVSTV 271 (307)
T ss_pred cceeeecccchh---------HHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccce--eeeeeccCCce
Confidence 999999999987 7788888887643 334555554 899999999999999999887 45566666666
Q ss_pred -EEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 452 -VFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 452 -v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
|..+.++|.-.- |+++.. +.+.+|--
T Consensus 272 ~v~dl~~hp~~~~-f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 272 IVTDLSCHPTMDD-FITATG-HGDLFWYQ 298 (307)
T ss_pred eEEeeecccCccc-eeEecC-Cceeceee
Confidence 889999998764 444433 34666643
No 73
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7e-29 Score=241.54 Aligned_cols=257 Identities=20% Similarity=0.333 Sum_probs=211.4
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.++-+.|++++. ..+.||.++......+...-.+ . + +.-.-.+..+.|+....++||++
T Consensus 48 nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k-------------~-k------qn~~~S~~DVkW~~~~~NlIAT~ 106 (839)
T KOG0269|consen 48 NRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFK-------------T-K------QNKFYSAADVKWGQLYSNLIATC 106 (839)
T ss_pred cCCcceeEEecc-cceeeEeeCcccCCcceeeecc-------------c-c------cceeeehhhcccccchhhhheee
Confidence 356666777765 5788888875544443322110 0 0 01123467788988778999999
Q ss_pred ecCCcEEEEECCC---CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 286 SADKQVKIWDVAA---GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 286 s~Dg~v~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
+..|.|.+||+.. .+.+..|..|...++++.|++..+++|++|+.||+|++||+|..+...........|+.|.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 9999999999987 5667788999999999999999999999999999999999999888877777788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
..++.|+++...|.|++||+|.. .++...+.+|.++|.|+.|+|++ .+|||||.|++|+||++.+.+...+
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp--------~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQP--------DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred CCCceEEEecCCceEEEeeccCc--------hhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccce
Confidence 98899999999999999999988 58889999999999999999976 9999999999999999998776555
Q ss_pred EEecCCCCCEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCccccccccCCC
Q 010769 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~llasg~~--dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
.+.. ...+|.++.|-|..+|.||+++. |-.|+|||++..-.....|..+.
T Consensus 258 ~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 258 HTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred eEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 5554 35789999999999999998875 56899999987766655554443
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=9.4e-29 Score=210.58 Aligned_cols=287 Identities=20% Similarity=0.320 Sum_probs=226.5
Q ss_pred CCCCcccccccccc---CCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769 135 DDEDSEDLEDMTIN---PNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 135 ~~~~~~~v~~~~~~---p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~ 210 (502)
...|...|-++.|+ |+|-+|++++.++.. ..-+...+. .-.+..|... .|..+ ...+..
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~p-----mlr~g~tgdwigtfeghkga---------vw~~~---l~~na~ 72 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKP-----MLRNGDTGDWIGTFEGHKGA---------VWSAT---LNKNAT 72 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCc-----hhccCCCCCcEEeeeccCcc---------eeeee---cCchhh
Confidence 35688889999988 578899999987621 111111110 0122233322 23211 145567
Q ss_pred EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
..|+++.|=+-+|||.-+++.+..+ .|...|..++|+.+ .++|++|+.+..
T Consensus 73 ~aasaaadftakvw~a~tgdelhsf----------------------------~hkhivk~~af~~d-s~~lltgg~ekl 123 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELHSF----------------------------EHKHIVKAVAFSQD-SNYLLTGGQEKL 123 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhhhh----------------------------hhhheeeeEEeccc-chhhhccchHHH
Confidence 7888999999999998776665432 58899999999999 779999999999
Q ss_pred EEEEECCCCe-eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEE
Q 010769 291 VKIWDVAAGK-CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 291 v~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 369 (502)
++|||++..+ +...+.+|++.|..+-|.... +.+++++.|++||+||.+++.... ....+.+|+++..+++|. ++
T Consensus 124 lrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~-sL~~~s~VtSlEvs~dG~--il 199 (334)
T KOG0278|consen 124 LRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ-SLEFNSPVTSLEVSQDGR--IL 199 (334)
T ss_pred hhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE-EEecCCCCcceeeccCCC--EE
Confidence 9999998764 567789999999999999888 788888999999999999988765 667789999999999875 56
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCC
Q 010769 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPK 448 (502)
Q Consensus 370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~ 448 (502)
+-...+.|.+||..+. .++.... -...|.+.+++|.. ..+++|+.|..++.||+.++.. +.. ..+|
T Consensus 200 Tia~gssV~Fwdaksf---------~~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeE--i~~~nkgh 266 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKSF---------GLLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEE--IGSYNKGH 266 (334)
T ss_pred EEecCceeEEeccccc---------cceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCce--eeecccCC
Confidence 6666788999999886 4454444 34568999999987 8999999999999999999874 333 4789
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
.++|.|+.|+|+|. +.|+|+.||+|+||.+..++..
T Consensus 267 ~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 267 FGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence 99999999999999 7999999999999999776654
No 75
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=220.83 Aligned_cols=293 Identities=19% Similarity=0.404 Sum_probs=232.6
Q ss_pred CcccCCCCCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC
Q 010769 129 PYLKDKDDEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~ 207 (502)
|++..- ..|.+.|.+++-+|.. ..+++|+.+| .++||.+..... ...+.-|...+.++ |+
T Consensus 57 PFv~~L-~gHrdGV~~lakhp~~ls~~aSGs~DG---~VkiWnlsqR~~--~~~f~AH~G~V~Gi--~v----------- 117 (433)
T KOG0268|consen 57 PFVGSL-DGHRDGVSCLAKHPNKLSTVASGSCDG---EVKIWNLSQREC--IRTFKAHEGLVRGI--CV----------- 117 (433)
T ss_pred cchhhc-cccccccchhhcCcchhhhhhccccCc---eEEEEehhhhhh--hheeecccCceeeE--Ee-----------
Confidence 555432 5699999999999998 8899999998 457777765432 12334444343222 22
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+...+++++.|.+|+.|.++.. +.. .+ .....++.|.-+.. .+.++||+.
T Consensus 118 ~~~~~~tvgdDKtvK~wk~~~~----p~~------------------------ti-lg~s~~~gIdh~~~-~~~FaTcGe 167 (433)
T KOG0268|consen 118 TQTSFFTVGDDKTVKQWKIDGP----PLH------------------------TI-LGKSVYLGIDHHRK-NSVFATCGE 167 (433)
T ss_pred cccceEEecCCcceeeeeccCC----cce------------------------ee-eccccccccccccc-cccccccCc
Confidence 2267888889999999998742 111 11 12355677777666 568999887
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 367 (502)
+ |-|||.....++.++.-....|.++.|+|....+|++|+.|+.|.+||+|+..+.. .......-+.++|+| ....
T Consensus 168 ~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mRTN~IswnP-eafn 243 (433)
T KOG0268|consen 168 Q--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMRTNTICWNP-EAFN 243 (433)
T ss_pred e--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeeccccceecCc-cccc
Confidence 4 99999999999999988889999999999998999999999999999999988765 555666778999999 4567
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010769 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
|+++.+|..++.||+|.. ..++....+|.+.|.++.|||.| .-+++||.|.+|+||..+.+...-+ ....
T Consensus 244 F~~a~ED~nlY~~DmR~l--------~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdi-Yhtk 313 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNL--------SRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDI-YHTK 313 (433)
T ss_pred eeeccccccceehhhhhh--------cccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhh-hhHh
Confidence 999999999999999998 58888999999999999999998 8999999999999999988764222 2233
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
..+.|+|+.||.|.+| +++|+.|++|++|.....+.+
T Consensus 314 RMq~V~~Vk~S~Dsky-i~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKY-IISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhheeeEEEEeccccE-EEecCCCcceeeeecchhhhc
Confidence 4567999999999997 889999999999998766654
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=222.27 Aligned_cols=282 Identities=18% Similarity=0.297 Sum_probs=220.4
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~ 214 (502)
+-|..++.++.|.++...|++|+.+. .+++|....... ....|++.... .+.+. |.++++++++
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr---~Ik~W~v~~~k~~~~~tLaGs~g~-----it~~d-------~d~~~~~~iA 236 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDR---IIKLWNVLGEKSELISTLAGSLGN-----ITSID-------FDSDNKHVIA 236 (459)
T ss_pred hccccccceeEEccCcchhhhcchhh---hhhhhhcccchhhhhhhhhccCCC-----cceee-------ecCCCceEEe
Confidence 45889999999999999999999887 456666554331 01112211111 12333 2678999999
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
++.|+.+++|+++. .+....+.+|++.|+++.|... ...+++|+.|.+|++|
T Consensus 237 as~d~~~r~Wnvd~---------------------------~r~~~TLsGHtdkVt~ak~~~~-~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------------------LRLRHTLSGHTDKVTAAKFKLS-HSRVVSGSADRTIKLW 288 (459)
T ss_pred ecCCCceeeeeccc---------------------------hhhhhhhcccccceeeehhhcc-ccceeeccccchhhhh
Confidence 99999999999975 4455577799999999999887 4459999999999999
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 374 (502)
|+....|.+++- ..+.+..|..++ ..+++|-.|++|++||.|+..... .....+.|+++..++++. .+++++.|
T Consensus 289 Dl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~-sv~~gg~vtSl~ls~~g~-~lLsssRD 362 (459)
T KOG0288|consen 289 DLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR-SVPLGGRVTSLDLSMDGL-ELLSSSRD 362 (459)
T ss_pred hhhhhheecccc-ccccccceEecc---eeeeecccccceEEEeccCCceee-EeecCcceeeEeeccCCe-EEeeecCC
Confidence 999999888875 345666777663 679999999999999999988765 556667999999999765 67788999
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG 450 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 450 (502)
.++.++|+++. .....+.+. ....+.+.|||++ .|+++||.||.|+||++.+++...+........
T Consensus 363 dtl~viDlRt~---------eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~ 432 (459)
T KOG0288|consen 363 DTLKVIDLRTK---------EIRQTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA 432 (459)
T ss_pred Cceeeeecccc---------cEEEEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence 99999999987 333333321 2348899999998 999999999999999999998655555444444
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769 451 AVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 451 ~v~~~~~spd~~~llasg~~dg~i~vw 477 (502)
.|++++|+|.|.+ |++++.++.+.+|
T Consensus 433 aI~s~~W~~sG~~-Llsadk~~~v~lW 458 (459)
T KOG0288|consen 433 AITSLSWNPSGSG-LLSADKQKAVTLW 458 (459)
T ss_pred ceEEEEEcCCCch-hhcccCCcceEec
Confidence 6999999999998 6678889999999
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.3e-27 Score=241.79 Aligned_cols=314 Identities=18% Similarity=0.287 Sum_probs=229.3
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CC---CceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GD---PNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~---~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~ 210 (502)
++..|.++.++|++..+++|+.-.|. .+.||..+.-.. .. +.+...+. -..+-..|+.| ++||.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~-~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~-------S~dG~ 82 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDG-GIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRF-------SPDGS 82 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccc-cceeeccccccchhhhhhcccchhheeec-cccCceeEEEE-------CCCCC
Confidence 34468999999999999999833322 234776543221 00 11111111 11233368777 89999
Q ss_pred EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
+||+|+.|+.|.||..... . ....+|.... .+.-...+....+.+|...|..+.|+|+ ..+|+++|.|++
T Consensus 83 ~lAsGSDD~~v~iW~~~~~-~--~~~~fgs~g~------~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~Dns 152 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEI-G--SGTVFGSTGG------AKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNS 152 (942)
T ss_pred eEeeccCcceEEEeeeccc-C--Cccccccccc------ccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccce
Confidence 9999999999999998741 1 1111211111 0112234556677899999999999998 669999999999
Q ss_pred EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------eecCCeEEEEeCCCC
Q 010769 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVAADVESLAWDPHA 364 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~v~~~p~~ 364 (502)
|.||+..+.+.+..+.+|.+.|..+.|.|-| ++|++-+.|++|++|.+.......... .....+..+.|+|+|
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred EEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc
Confidence 9999999999999999999999999999999 999999999999999976543322111 123457899999998
Q ss_pred CCEEEEE-eCC---CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC--------C----CC----EEEEEe
Q 010769 365 EHSFVVS-LED---GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL--------V----PN----LLATGS 424 (502)
Q Consensus 365 ~~~l~~~-~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~--------~----~~----~l~t~s 424 (502)
. +|++. +.+ .++.|.+-.+. +.-..+.+|.+++.+++|+|. | +. ++|+||
T Consensus 232 ~-~las~nA~n~~~~~~~IieR~tW---------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 232 H-HLASPNAVNGGKSTIAIIERGTW---------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred C-eecchhhccCCcceeEEEecCCc---------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 7 55554 222 35777776554 667788999999999999982 1 11 788999
Q ss_pred CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
.|++|.||.....+|..+ ........|..++|+|||. .|.+++.||+|.+..+...+
T Consensus 302 qDrSlSVW~T~~~RPl~v-i~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFV-IHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccEEEEecCCCCchhh-hhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcchHH
Confidence 999999999988876433 2333456799999999998 47778999999999997544
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=213.88 Aligned_cols=255 Identities=18% Similarity=0.267 Sum_probs=203.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|+.+++|||+.|..-.||++.+++.. ..+.+|.+.|+++.|+.+ +.+||||
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------------~eltgHKDSVt~~~Fshd-gtlLATG 124 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGEFA---------------------------GELTGHKDSVTCCSFSHD-GTLLATG 124 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCcce---------------------------eEecCCCCceEEEEEccC-ceEEEec
Confidence 688999999999999999999876522 234589999999999999 6699999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
..+|.|+||...++.....+...-..+.=+.|||.+ .+|++|+.||.+-+|.+.++.....+.+|..++++=.|.|+|+
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 999999999999999888887666788889999988 9999999999999999998766666788999999999999976
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCC----------------------------------CCCccEEEe--------cC
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSDPDST----------------------------------SQQSSFTLH--------AH 403 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~--------~h 403 (502)
.++++..||+|++|+..++.+..... ..+.+.... .+
T Consensus 204 -r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 204 -RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred -eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 79999999999999999874310000 000011111 12
Q ss_pred CCCeeEEEEcCCCC--CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 404 DKAVCTISYNPLVP--NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 404 ~~~v~~l~~sp~~~--~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
...+.|+.+.|... .+.|+|+.||+|.|||+...+++ ..-.|..+|+.+.|.+ ..| |++++.+|.|+.||.++
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---~~c~he~~V~~l~w~~-t~~-l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---HICEHEDGVTKLKWLN-TDY-LLTACANGKVRQWDART 357 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhh---eeccCCCceEEEEEcC-cch-heeeccCceEEeeeccc
Confidence 22333333333221 47889999999999999988743 3345677899999999 565 77889999999999999
Q ss_pred CccccccccCCCCC
Q 010769 482 DAGISNRFSKYSKP 495 (502)
Q Consensus 482 ~~~~~~~~~~~~~~ 495 (502)
|.++..+.+|....
T Consensus 358 G~l~~~y~GH~~~I 371 (399)
T KOG0296|consen 358 GQLKFTYTGHQMGI 371 (399)
T ss_pred cceEEEEecCchhe
Confidence 99999988887643
No 79
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.3e-26 Score=203.65 Aligned_cols=272 Identities=22% Similarity=0.360 Sum_probs=211.6
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
..+.|.++.|+|..+.|++++.++ +|++|....... .+...|..++ ++.++. +...+++|+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDg---slrlYdv~~~~l---~~~~~~~~pl----L~c~F~--------d~~~~~~G~~ 73 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDG---SLRLYDVPANSL---KLKFKHGAPL----LDCAFA--------DESTIVTGGL 73 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccC---cEEEEeccchhh---hhheecCCce----eeeecc--------CCceEEEecc
Confidence 467899999999999999999998 667777766533 3434444443 666663 4678999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
||.|+.+|+++.... .+..|..+|.||.+++. ...+++||+|++|++||.+
T Consensus 74 dg~vr~~Dln~~~~~----------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNED----------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred CceEEEEEecCCcce----------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEecc
Confidence 999999999864322 33469999999999987 6699999999999999999
Q ss_pred CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg 375 (502)
...++.++. ...+|.++..+. +.|++|+.+..+.+||+|+...... .....-.++|+++.|.+. -+++++-+|
T Consensus 125 ~~~~~~~~d-~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieG 199 (323)
T KOG1036|consen 125 NKVVVGTFD-QGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEG 199 (323)
T ss_pred ccccccccc-cCceEEEEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecc
Confidence 866666665 345899888764 6799999999999999998765432 224556789999999655 588888999
Q ss_pred eEEEEECCCCCCCCCCCCCCccEEEecCC---------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHD---------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.|.+=.+...... ....+.+..|. -+|++|+|+|-. +.||||+.||.|.+||+.+.+ .+..+.
T Consensus 200 RVavE~~d~s~~~-----~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK--rl~q~~ 271 (323)
T KOG1036|consen 200 RVAVEYFDDSEEA-----QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK--RLKQLA 271 (323)
T ss_pred eEEEEccCCchHH-----hhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh--hhhhcc
Confidence 9887655543110 24455666664 379999999986 899999999999999999887 455666
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeC
Q 010769 447 PKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~llasg~~ 470 (502)
.....|.+++|+.+|. +||++++
T Consensus 272 ~~~~SI~slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSMDGS-LLAIASS 294 (323)
T ss_pred CCCCceEEEEeccCCC-eEEEEec
Confidence 6667899999999999 6888764
No 80
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-27 Score=200.53 Aligned_cols=242 Identities=25% Similarity=0.384 Sum_probs=194.0
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-cCCCCcEEEEEe
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs 286 (502)
-|+.|||++.|++|+|+.+..... ..+...+.||.++|+.++| +|..+.+|||++
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCC------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEee
Confidence 499999999999999999865332 2334456799999999999 677788999999
Q ss_pred cCCcEEEEECCCCe--eeEEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCC---CccceEeecCCeEEEEe
Q 010769 287 ADKQVKIWDVAAGK--CNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARIST---HSGFKWAVAADVESLAW 360 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~v~~ 360 (502)
.||.|.||.-.+++ ....+..|...|++++|.|.+ +-+|++++.||.|.|.+.+... .......|.-.|++++|
T Consensus 78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 99999999988775 344567899999999999875 2578899999999999988752 23345678889999999
Q ss_pred CCC---C----------CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC---CCEEEEEe
Q 010769 361 DPH---A----------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV---PNLLATGS 424 (502)
Q Consensus 361 ~p~---~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~---~~~l~t~s 424 (502)
.|. | .+.|++|+.|..|+||...... ...-.++.+|...|+.++|.|.. ..+||+||
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 985 2 1359999999999999998762 24445689999999999999964 35899999
Q ss_pred CCCcEEEEECCCC-CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 425 TDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 425 ~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
.||+|.||-.+.. .+.....+......+.+++||+.|. +|+.++.|+.|.+|.-..
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence 9999999987642 1112222333457899999999999 699999999999998654
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.9e-27 Score=234.71 Aligned_cols=235 Identities=27% Similarity=0.436 Sum_probs=207.5
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
..++++|+.+++|++|+...+. .....+.+|.+.|+++++.. ++.+|++|+.|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~--------------------------~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D 270 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGY--------------------------LILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD 270 (537)
T ss_pred cCeEEecCCCceeEEeecccce--------------------------EEEeeccCCCCCceeEEEec-CCCEEEEEecC
Confidence 7899999999999999986532 22234679999999999987 46799999999
Q ss_pred CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 368 (502)
.+++|||+.+|.|.+++.+|.+.|.++...+ .++++|+.|.+|++|++.++.......+|...|.++..+ ..++
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLL 344 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEE
Confidence 9999999999999999999999999998876 568889999999999999998887666799999999998 3489
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC
Q 010769 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK 448 (502)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~ 448 (502)
++|+.||+|++|++++. +++..+.+|...|.++.+.+. ..+++|+.|++|++||+++.. .++.++.+|
T Consensus 345 vsgs~d~~v~VW~~~~~---------~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h 412 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTG---------KCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR-KCIHTLQGH 412 (537)
T ss_pred EEEecCceEEEEEhhhc---------eeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-hhhhhhcCC
Confidence 99999999999999976 899999999999999988863 789999999999999999983 388899999
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
..-+..+.+.. . .|++++.|+.|++||..++++++.+.+.
T Consensus 413 ~~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 413 TSLVSSLLLRD--N-FLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred ccccccccccc--c-eeEeccccccEEEeecccCceeeeeccC
Confidence 98887766644 4 5899999999999999999999887774
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.4e-26 Score=200.09 Aligned_cols=230 Identities=20% Similarity=0.289 Sum_probs=185.8
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEe
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs 286 (502)
++.|+|+|+.|-+|+|||+..... ...+..|.+.|++|.|.+.. .+.|++|+
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~q---------------------------lg~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQ---------------------------LGILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhh---------------------------hcceeccccceEEEEecCCcchhheeeec
Confidence 699999999999999999964222 22344699999999998872 13789999
Q ss_pred cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 366 (502)
.||.|.+|+.....++.++++|.+.|+.++.||.+ .+.++.+.|+.+++||+-.++... ........+.|.|+|.|.
T Consensus 105 dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~-v~~L~~~at~v~w~~~Gd- 181 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAF-VLNLKNKATLVSWSPQGD- 181 (362)
T ss_pred CCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccce-eeccCCcceeeEEcCCCC-
Confidence 99999999999999999999999999999999999 999999999999999998776543 445555666799999987
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.|+++..+ .|-+|.+.+. . ++........+.++.|.. ...|++|+.++.|++||..... +...+.
T Consensus 182 ~F~v~~~~-~i~i~q~d~A---------~-v~~~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~--~~~~~~ 246 (362)
T KOG0294|consen 182 HFVVSGRN-KIDIYQLDNA---------S-VFREIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDT--PLTEFL 246 (362)
T ss_pred EEEEEecc-EEEEEecccH---------h-HhhhhhccccceeeeecC--CceEEEecCCceEEEeccCCCc--cceeee
Confidence 56665544 5888888765 2 222222335577777765 3789999999999999998865 577888
Q ss_pred CCCCCEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 447 PKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 447 ~~~~~v~~~~~--spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+|...|-.+.+ .|++. +|+++++||.|+|||+....
T Consensus 247 AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cchhheeeeEEEecCCce-EEEEeccCceEEEEEccccc
Confidence 99999999985 45565 69999999999999998773
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-25 Score=196.25 Aligned_cols=282 Identities=17% Similarity=0.245 Sum_probs=209.0
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM- 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~- 217 (502)
...|+++.|+++|.+|++++.++ .|+||....+.. ...++.++-.+ -+..+ ....+.++.++.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dD---sl~LYd~~~g~~-~~ti~skkyG~-----~~~~F-------th~~~~~i~sStk 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDD---SLRLYDSLSGKQ-VKTINSKKYGV-----DLACF-------THHSNTVIHSSTK 77 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCC---eEEEEEcCCCce-eeEeecccccc-----cEEEE-------ecCCceEEEccCC
Confidence 56899999999999999988776 456665544332 01111111111 12223 234455555555
Q ss_pred -CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 218 -EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 218 -dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
|.+||.-++.. .+....+.||...|++|+.+|-+ ..++|+|.|++|++||+
T Consensus 78 ~d~tIryLsl~d---------------------------NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 78 EDDTIRYLSLHD---------------------------NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDL 129 (311)
T ss_pred CCCceEEEEeec---------------------------CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEe
Confidence 78999999865 44555788999999999999994 79999999999999999
Q ss_pred CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceE----eecCCeEEEEeCCCCCCEEEEE
Q 010769 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKW----AVAADVESLAWDPHAEHSFVVS 371 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~----~~~~~v~~v~~~p~~~~~l~~~ 371 (502)
+..+|...+.... -..++|.|.| -+++++.....|++||+|.-.. +...+ ......+.+.|+|+|. .++.+
T Consensus 130 R~~~cqg~l~~~~--~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLls 205 (311)
T KOG1446|consen 130 RVKKCQGLLNLSG--RPIAAFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLS 205 (311)
T ss_pred cCCCCceEEecCC--CcceeECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEE
Confidence 9888877775333 3357899999 8888888777999999997632 22222 2345688999999987 78888
Q ss_pred eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe---eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-
Q 010769 372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP- 447 (502)
Q Consensus 372 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~- 447 (502)
+..+.+++.|.-.+ ....++..+...- .+.+|+|++ +++++|+.||+|.+|++.++.. +....+
T Consensus 206 T~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~ 273 (311)
T KOG1446|consen 206 TNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK--VAVLRGP 273 (311)
T ss_pred eCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE--eeEecCC
Confidence 89999999999887 5566666655433 577899998 9999999999999999999984 444444
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+.+++.++.|+|... ++++++ ..+.+|=.....
T Consensus 274 ~~~~~~~~~fnP~~~-mf~sa~--s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 274 NGGPVSCVRFNPRYA-MFVSAS--SNLVFWLPDEDA 306 (311)
T ss_pred CCCCccccccCCcee-eeeecC--ceEEEEeccccc
Confidence 789999999999876 576654 468888765433
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=8e-27 Score=217.44 Aligned_cols=254 Identities=18% Similarity=0.243 Sum_probs=192.8
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.|.|..|++|+.|-.|++||+..++...+. .+.........|.+++|++.+. .|++.
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------------fr~l~P~E~h~i~sl~ys~Tg~-~iLvv 232 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------------FRQLQPCETHQINSLQYSVTGD-QILVV 232 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchh----------------------hhccCcccccccceeeecCCCC-eEEEE
Confidence 788999999999999999999876543321 1111223556899999999954 66666
Q ss_pred ecCCcEEEEECCCCeeeE------------EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee--
Q 010769 286 SADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-- 351 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-- 351 (502)
+.....+|+|-.....+. .-++|...++|.+|+|.....|++++.||++++|++...+.....+.+
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 777889999944322222 225799999999999999899999999999999999876654333332
Q ss_pred ----cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeC
Q 010769 352 ----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 352 ----~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~ 425 (502)
.-.+++++|+|++. ++++|+.||.|.+|+.+.... ......-.+|.. .|+||.||++| ++|++-+.
T Consensus 313 ~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v------~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~ 384 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV------RPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGF 384 (641)
T ss_pred CCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc------ccceEeeeccCCCCceeEEEecccc-chhhhccC
Confidence 33589999999987 699999999999999876532 122344467876 89999999999 99999999
Q ss_pred CCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCccccccccC
Q 010769 426 DKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 426 dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~------dg~i~vwd~~~~~~~~~~~~~ 491 (502)
|++++|||++..+. ..+.+--...-+-+.++|||+.+ ||++|.+ .|++.+||..+-..+.++.-.
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 99999999998652 22222223344567899999998 6888764 467999999988887766543
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-27 Score=225.61 Aligned_cols=246 Identities=22% Similarity=0.331 Sum_probs=207.1
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
|+++||.+||.||.|++|++....... .......+..|.+.|+.+....+ ++.|+|+|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------------s~~~~asme~HsDWVNDiiL~~~-~~tlIS~S 92 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------------STPYIASMEHHSDWVNDIILCGN-GKTLISAS 92 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc---------------------ccchhhhhhhhHhHHhhHHhhcC-CCceEEec
Confidence 678899999999999999986422211 01124456789999999999888 55899999
Q ss_pred cCCcEEEEECCCC--eeeEEeccCCCCeEEEEE-cCCCCcEEEEEECCCcEEEEeCCCCCC--cc--------ce-Eeec
Q 010769 287 ADKQVKIWDVAAG--KCNLTLEHHTDKVQAVAW-NHHSPQILLSGSFDRSVVMKDARISTH--SG--------FK-WAVA 352 (502)
Q Consensus 287 ~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~-~~~~ 352 (502)
.|-+|++|+...+ -|..++..|.+.|.|+++ -++. .++++|+.|+.|.+||+.++.. .. .. .++.
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9999999999877 578889999999999999 5554 8999999999999999997632 11 01 1456
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
..|.+++.++.+ ..+++|+..+.|++||.++. +.+..+.+|+..|.++..+++| ..++++|.||+|++|
T Consensus 172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLW 240 (735)
T ss_pred cceeeeecCCcc-eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEee
Confidence 679999999976 48999999999999999997 7788888999999999999998 999999999999999
Q ss_pred ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769 433 DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
|+...+ |+.++..|...|+++..+|+-.+ +.+|+.||.|..=|+++......++
T Consensus 241 dLgqQr--Cl~T~~vH~e~VWaL~~~~sf~~-vYsG~rd~~i~~Tdl~n~~~~tlic 294 (735)
T KOG0308|consen 241 DLGQQR--CLATYIVHKEGVWALQSSPSFTH-VYSGGRDGNIYRTDLRNPAKSTLIC 294 (735)
T ss_pred eccccc--eeeeEEeccCceEEEeeCCCcce-EEecCCCCcEEecccCCchhheEee
Confidence 998877 88899999999999999999885 8999999999999998854333333
No 86
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3e-25 Score=222.62 Aligned_cols=231 Identities=14% Similarity=0.197 Sum_probs=171.1
Q ss_pred cceeeeecCCCCCCCC-CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee
Q 010769 193 PLCMAWLDCPLKDREK-GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG 271 (502)
Q Consensus 193 ~~~~~w~~~~~~~s~~-~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 271 (502)
.++++| +|+ +++||+|+.||.|+||++........ ........+.+|...|.+
T Consensus 77 V~~laf-------sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------------~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 77 ILDLQF-------NPCFSEILASGSEDLTIRVWEIPHNDESVK-------------------EIKDPQCILKGHKKKISI 130 (568)
T ss_pred EEEEEE-------cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------ccccceEEeecCCCcEEE
Confidence 478888 665 88999999999999999974321000 001122345689999999
Q ss_pred EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee
Q 010769 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 351 (502)
++|+|++..+|++|+.|++|+|||+.+++.+..+. |...|.+++|+|+| .+|++++.|+.|+|||++++........|
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99999977678899999999999999998887776 56789999999999 88999999999999999998776655566
Q ss_pred cCCeEE-----EEeCCCCCCEEEEEeCC----CeEEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEE
Q 010769 352 AADVES-----LAWDPHAEHSFVVSLED----GTIKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 352 ~~~v~~-----v~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l 420 (502)
.+.+.+ ..|++++. ++++++.+ +.|++||++.. ..++..+. .+.+.+......+.+ .++
T Consensus 209 ~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~L~p~~D~~tg-~l~ 278 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAPLIPHYDESTG-LIY 278 (568)
T ss_pred cCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccceEEeeeCCCC-CEE
Confidence 665433 23457655 66666655 37999999975 24554443 233333334334445 889
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
++|+.|++|++|++..+....+..+. +..++.+++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 99999999999999887543333333 667889999999853
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.8e-25 Score=194.78 Aligned_cols=245 Identities=18% Similarity=0.282 Sum_probs=193.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+++|.+|++++.|.+|+|||...+..+.. ...+.-.|..+.|... .+.++.+
T Consensus 23 s~~G~~litss~dDsl~LYd~~~g~~~~t---------------------------i~skkyG~~~~~Fth~-~~~~i~s 74 (311)
T KOG1446|consen 23 SDDGLLLITSSEDDSLRLYDSLSGKQVKT---------------------------INSKKYGVDLACFTHH-SNTVIHS 74 (311)
T ss_pred cCCCCEEEEecCCCeEEEEEcCCCceeeE---------------------------eecccccccEEEEecC-CceEEEc
Confidence 88999999999999999999976443322 2234456777777665 4566666
Q ss_pred ec--CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769 286 SA--DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 286 s~--Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 363 (502)
+. |.+|+..++.+.+.++.|.+|...|.+|+.+|-+ ..+++++.|++|++||+|..++..... ...-..++|+|.
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~ 151 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPE 151 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCC
Confidence 66 8899999999999999999999999999999999 899999999999999999887765332 233456789998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
|- +|+++.....|++||+|.... .|..++. ......+.+.|+|+| ++|+.++..+.+++.|.-.+...
T Consensus 152 GL-ifA~~~~~~~IkLyD~Rs~dk-------gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~ 222 (311)
T KOG1446|consen 152 GL-IFALANGSELIKLYDLRSFDK-------GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVK 222 (311)
T ss_pred Cc-EEEEecCCCeEEEEEecccCC-------CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEe
Confidence 64 788887777999999998742 3444443 336778999999999 88888888999999999998854
Q ss_pred EEEEecCCCCC-EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 441 CIASRNPKAGA-VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 441 ~~~~~~~~~~~-v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
.........+. -...+|+||+++ +.+|+.||+|.+|++.++..+...-+.
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred eeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 44443333332 257889999996 778999999999999999988776654
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=6.1e-26 Score=218.73 Aligned_cols=279 Identities=19% Similarity=0.331 Sum_probs=215.8
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCC-CCCCEEEE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s-~~~~~la~ 214 (502)
+.|+.+|..+++-+.. .+++++.++ ++++|. .... ....+|...- ...|+.+.+.+. .++-.|++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~---t~~vw~--~~~~---~~l~~~~~~~-----~~g~i~~~i~y~e~~~~~l~~ 76 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDG---TVKVWA--KKGK---QYLETHAFEG-----PKGFIANSICYAESDKGRLVV 76 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCC---ceeeee--ccCc---ccccceeccc-----CcceeeccceeccccCcceEe
Confidence 4588888887766555 566777676 345554 3332 2222222111 111111111112 24557999
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
|++|..|.+|.+... .+...+.+|...|.|++...+ . .++|||.|.++++|
T Consensus 77 g~~D~~i~v~~~~~~---------------------------~P~~~LkgH~snVC~ls~~~~-~-~~iSgSWD~TakvW 127 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQA---------------------------EPLYTLKGHKSNVCSLSIGED-G-TLISGSWDSTAKVW 127 (745)
T ss_pred ecccceEEEEecCCC---------------------------CchhhhhccccceeeeecCCc-C-ceEecccccceEEe
Confidence 999999999998753 334466799999999998777 3 38999999999999
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 374 (502)
-. +++...+.+|+..|+++..-|.+ .++||+.|.+|++|.- ++....+.+|...|+.+++-+++ .|++++.|
T Consensus 128 ~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~flScsND 199 (745)
T KOG0301|consen 128 RI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSND 199 (745)
T ss_pred cc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--CeEeecCC
Confidence 74 56777799999999999999987 7999999999999987 44555677899999999999865 49999999
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 454 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 454 (502)
|.|++|++. + ..+..+.+|+..|.+++..+++ ..+++++.|++++||+.. .+...+......|++
T Consensus 200 g~Ir~w~~~-g---------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWs 264 (745)
T KOG0301|consen 200 GSIRLWDLD-G---------EVLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWS 264 (745)
T ss_pred ceEEEEecc-C---------ceeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC----ceEEEEecCccceEE
Confidence 999999994 3 7899999999999999977766 899999999999999976 356666656668999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 455 VAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 455 ~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
+.+-++|. +++|++||.||||.....
T Consensus 265 a~~L~NgD--Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 265 AKVLLNGD--IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEeeCCC--EEEeccCceEEEEEeccc
Confidence 99999998 888999999999998743
No 89
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-27 Score=242.30 Aligned_cols=305 Identities=22% Similarity=0.351 Sum_probs=234.2
Q ss_pred ccccccCCCc-eEEEEEecCC-------cceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769 143 EDMTINPNDA-VIVCARNEDD-------VSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 143 ~~~~~~p~~~-~l~~~~~~~~-------~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la 213 (502)
..++|+|.+. ++++|...+. .++++||.++..... ....+..+. ...-..++.|..+.. ...-+||
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~---~~~GlIa 84 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGS---HSHGLIA 84 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCC---Cccceee
Confidence 3468888887 5666543321 136788877765541 011222111 222235777843311 0113589
Q ss_pred EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
.|+.||.|.+|+.... .+............|++.|..|.|++..+++||+|+.+|.|.|
T Consensus 85 GG~edG~I~ly~p~~~---------------------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASI---------------------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred ccccCCceEEecchhh---------------------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 9999999999998642 1223344455666899999999999998889999999999999
Q ss_pred EECCCCeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec--CCeEEEEeCCCCCCEEE
Q 010769 294 WDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFV 369 (502)
Q Consensus 294 wd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~ 369 (502)
||+++.+.-.++ ....+.|.+|+|+..-.++|++++.+|.+.|||+|..+.+.....+. ..+..+.|+|+....++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999876544444 22457899999999888899999999999999999886655333332 34789999999888888
Q ss_pred EEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769 370 VSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 370 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
+++.|. .|.+||+|.. ..++..+.+|...|.++.|++.++.+|++++.|+.|.+|+..+++ .+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~a--------ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--vl~~~p 293 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFA--------SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--VLGELP 293 (1049)
T ss_pred eecCCCCCceeEeeccccc--------CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--EeeecC
Confidence 887654 6999999988 578888899999999999999988999999999999999999988 567777
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
.....++.+.|+|..+.+|++++-+|.|.||.+.+..
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7778999999999999889999999999999997765
No 90
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.3e-26 Score=198.55 Aligned_cols=243 Identities=21% Similarity=0.320 Sum_probs=186.7
Q ss_pred CCC-CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769 205 DRE-KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 205 ~s~-~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
||| ...+|++|+.||+||+|++.......+ .....|.++|.+++|+.+ +..++
T Consensus 35 FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------------------ka~~~~~~PvL~v~Wsdd-gskVf 88 (347)
T KOG0647|consen 35 FSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------------------KAQQSHDGPVLDVCWSDD-GSKVF 88 (347)
T ss_pred eccccCceEEecccCCceEEEEEecCCcccc-------------------------hhhhccCCCeEEEEEccC-CceEE
Confidence 477 577888999999999999975322111 133469999999999999 47999
Q ss_pred EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC-cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 284 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
+|+.|+.+++||+.+++ +..+..|.++|.++.|-+... ..|+||+.|++|++||+|...... ....+..+.++..-.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQLPERVYAADVLY 166 (347)
T ss_pred eeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eeeccceeeehhccC
Confidence 99999999999999995 456778999999999987652 489999999999999999877654 566777777776543
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
+ ++++++.+..|.+|+++++... .......-.-.+.|++..++. ...+.|+-.|.+-+..+..+.+..-
T Consensus 167 --p-m~vVata~r~i~vynL~n~~te-------~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 167 --P-MAVVATAERHIAVYNLENPPTE-------FKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred --c-eeEEEecCCcEEEEEcCCCcch-------hhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCc
Confidence 3 7889999999999999876321 111111234467889988887 5559999999999999887643333
Q ss_pred EEecCCC---------CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 443 ASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 443 ~~~~~~~---------~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+++..|. ..|++++|+|... .|+|+|+||++.+||-.....+..
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhc
Confidence 4444343 3688999999877 699999999999999876655543
No 91
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=209.18 Aligned_cols=250 Identities=18% Similarity=0.272 Sum_probs=201.1
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
.||++|+|||+++.|.+..||.+... ...++.+.+.+|..+|..+.|+|+ .++|+
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d------------------------~~~kl~~tlvgh~~~V~yi~wSPD-dryLl 285 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYD------------------------VHFKLKKTLVGHSQPVSYIMWSPD-DRYLL 285 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecC------------------------cceeeeeeeecccCceEEEEECCC-CCeEE
Confidence 35999999999999999999998531 114455677799999999999999 55888
Q ss_pred EEecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 284 SASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 284 sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
+|+.+..+++||+.+|.+.+.+. +|...+++++|.|+| ..+++|+.|+++..||+...............|.+++..+
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC
Confidence 99999999999999999888874 356889999999999 8899999999999999986654433333345699999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
+|. .+++.+.|..|++|+..+. .. ..+.....+|+++++|.++ +++++.-.+..+++||+...+ .+
T Consensus 365 Dgk-~vl~v~~d~~i~l~~~e~~---------~d-r~lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~--lv 430 (519)
T KOG0293|consen 365 DGK-YVLLVTVDKKIRLYNREAR---------VD-RGLISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK--LV 430 (519)
T ss_pred CCc-EEEEEecccceeeechhhh---------hh-hccccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh--HH
Confidence 987 6777778999999998764 11 2233456789999999998 888888889999999999665 56
Q ss_pred EEecCCCCC--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769 443 ASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 443 ~~~~~~~~~--v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
..+.+|... +..-+|---...++|+|+.|+.|+||+..+++++..+-+|..
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~ 483 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK 483 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence 666676543 444456544433699999999999999999999988887753
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=201.23 Aligned_cols=289 Identities=14% Similarity=0.231 Sum_probs=218.0
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecC------CC-----------CCCceeeeeccccCCCcceeeee
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES------DG-----------GDPNLYVHHHIIIPAFPLCMAWL 199 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~------~~-----------~~~~l~~~~~~~~~~~~~~~~w~ 199 (502)
.|...+.+.+|+|+|.++|+|+.+. +++|...+.. .. -.+.||-|-+.+ .++.|
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~---SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev-----n~l~F- 180 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADA---SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV-----NDLDF- 180 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcc---eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc-----cceee-
Confidence 4888999999999999999999886 5566655410 00 012344444333 34444
Q ss_pred cCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769 200 DCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 200 ~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
+|....|++|+.|++|++||+...... ..........+|.+|+|+|. +
T Consensus 181 ------HPre~ILiS~srD~tvKlFDfsK~saK-------------------------rA~K~~qd~~~vrsiSfHPs-G 228 (430)
T KOG0640|consen 181 ------HPRETILISGSRDNTVKLFDFSKTSAK-------------------------RAFKVFQDTEPVRSISFHPS-G 228 (430)
T ss_pred ------cchhheEEeccCCCeEEEEecccHHHH-------------------------HHHHHhhccceeeeEeecCC-C
Confidence 899999999999999999999632111 11112235678999999999 4
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-ee-cCC
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV-AAD 354 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~-~~~ 354 (502)
.+|+.|..-.++++||+++-+|...- ..|++.|+++.+++.+ ++.++++.||.|++||--+.+++.... .| ...
T Consensus 229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 58999999999999999998886554 4699999999999999 999999999999999988888765433 33 456
Q ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-----CCCeeEEEEcCCCCCEEEEEe-CCCc
Q 010769 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGS-TDKM 428 (502)
Q Consensus 355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s-~dg~ 428 (502)
|.+..|..++. ++++++.|..|++|.+.++ +++....+- ..--+...|+... .+++.-. ..+.
T Consensus 308 vcSa~Ftkn~k-yiLsSG~DS~vkLWEi~t~---------R~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~s 376 (430)
T KOG0640|consen 308 VCSAVFTKNGK-YILSSGKDSTVKLWEISTG---------RMLKEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNS 376 (430)
T ss_pred eeeEEEccCCe-EEeecCCcceeeeeeecCC---------ceEEEEecCCcccchhhhhhhhhcCcc-ceEEccccccCc
Confidence 89999999876 8999999999999999987 555555432 1112334566554 4444433 3577
Q ss_pred EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
+.-||.++.....+.. .+|.+.+..+.-+|.++ .+++|+.|-++++|--+
T Consensus 377 lcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 377 LCSWDARTADRVALLS-LGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeccccchhhhhhcc-cCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 9999999986444433 47999999999999999 59999999999999644
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2e-25 Score=204.23 Aligned_cols=283 Identities=17% Similarity=0.238 Sum_probs=230.6
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg 219 (502)
..+.++.+.|..+.+++|+.+. .+-+++...++...++..|. ..+.|+.+ +++...+++++.|-
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~-----~av~~d~~s~q~l~~~~Gh~-------kki~~v~~----~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDK-----TAVLFDKPSNQILATLKGHT-------KKITSVKF----HKDLDTVITASADE 283 (506)
T ss_pred CCeeEEeecCCCCcceecCCCC-----ceEEEecchhhhhhhccCcc-------eEEEEEEe----ccchhheeecCCcc
Confidence 5688999999989999999886 45555555443334444443 33445433 78999999999999
Q ss_pred cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~ 299 (502)
.|+||......+ ......|..+|+.+..+|. +.||++++.||+..+.|++++
T Consensus 284 ~i~vws~~~~s~---------------------------~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 284 IIRVWSVPLSSE---------------------------PTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSG 335 (506)
T ss_pred eEEeeccccccC---------------------------ccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCC
Confidence 999999864321 1233479999999999999 569999999999999999999
Q ss_pred eeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769 300 KCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 300 ~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 377 (502)
.++..... ..-.+++.+|||+| .+|.+|..||.|+|||+.++.....+.+|.++|..++|+-+| +++++++.|+.|
T Consensus 336 ~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V 413 (506)
T KOG0289|consen 336 SQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSV 413 (506)
T ss_pred cEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeE
Confidence 98777653 22458999999999 999999999999999999999888788899999999999865 689999999999
Q ss_pred EEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEE
Q 010769 378 KGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 456 (502)
++||+|.. +...++... ..++.++.|.+.| .+|+.++.+=+|++++-.+....++..+..|.+..+++.
T Consensus 414 ~lwDLRKl---------~n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~ 483 (506)
T KOG0289|consen 414 KLWDLRKL---------KNFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR 483 (506)
T ss_pred EEEEehhh---------cccceeeccccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceee
Confidence 99999987 344444332 3479999999998 899999888888888877777778888888999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEC
Q 010769 457 FSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 457 ~spd~~~llasg~~dg~i~vwd~ 479 (502)
|....++ ++++|.|..++++.+
T Consensus 484 Fg~~aq~-l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQY-LASTSMDAILRLYAL 505 (506)
T ss_pred ecccceE-EeeccchhheEEeec
Confidence 9999885 999999999988864
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=204.05 Aligned_cols=220 Identities=23% Similarity=0.378 Sum_probs=183.1
Q ss_pred ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC-----------------C-eeeEEeccCCCCeEEEEEcCC
Q 010769 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-----------------G-KCNLTLEHHTDKVQAVAWNHH 320 (502)
Q Consensus 259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-----------------~-~~~~~~~~h~~~v~~l~~~~~ 320 (502)
...+..|..++.+.+|+|+ +.++|+||.|..|+|.|+.. + -.++++..|...|+++.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred eEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3455689999999999999 56999999999999999861 1 246788889999999999999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769 321 SPQILLSGSFDRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398 (502)
Q Consensus 321 ~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 398 (502)
. .+|++|+.|++|++||+........ .+....+|.++.|+|.|. ++++|+.-..+++||+.+.+.. .+..
T Consensus 184 e-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qcf------vsan 255 (430)
T KOG0640|consen 184 E-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCF------VSAN 255 (430)
T ss_pred h-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEe------eecC
Confidence 9 9999999999999999986554322 234456799999999877 8999999999999999987321 1112
Q ss_pred EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-CC-CCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-~~-~~~v~~~~~spd~~~llasg~~dg~i~v 476 (502)
.-..|++.|+++.+++.+ ++.+|+|.||.|++||--+++ |+.++. .| ...|.++.|..+++| +.++|.|..+++
T Consensus 256 Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkL 331 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKL 331 (430)
T ss_pred cccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeee
Confidence 235689999999999998 999999999999999988877 554442 33 456999999999998 677899999999
Q ss_pred EECCCCccccccccC
Q 010769 477 WDTLSDAGISNRFSK 491 (502)
Q Consensus 477 wd~~~~~~~~~~~~~ 491 (502)
|.+.++.++.++.+.
T Consensus 332 WEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGA 346 (430)
T ss_pred eeecCCceEEEEecC
Confidence 999999999888776
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.3e-26 Score=218.62 Aligned_cols=248 Identities=21% Similarity=0.358 Sum_probs=205.2
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
+.+.+.|+++.|+|+|.+|++|...+ .+.||....... .+.+..+|.. ..-|++| ++..+.+|
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g---~v~iwD~~~~k~-~~~~~~~h~~----rvg~laW---------~~~~lssG 276 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDG---TVQIWDVKEQKK-TRTLRGSHAS----RVGSLAW---------NSSVLSSG 276 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCC---eEEEEehhhccc-cccccCCcCc----eeEEEec---------cCceEEEe
Confidence 33478999999999999999999998 445555443332 2344454433 3379999 48899999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.++.|.++|+...+... ..+.+|...|..|+|+++ ..+||+|+.|+.+.|||
T Consensus 277 sr~~~I~~~dvR~~~~~~--------------------------~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 277 SRDGKILNHDVRISQHVV--------------------------STLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWD 329 (484)
T ss_pred cCCCcEEEEEEecchhhh--------------------------hhhhcccceeeeeEECCC-CCeeccCCCccceEecc
Confidence 999999999997533221 136689999999999999 67999999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE-Ee
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV-SL 372 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-~~ 372 (502)
.....++..+..|...|.+++|+|-...+|++|+ .|+.|++||..++..+. .....+.|.+|.|++....++.+ |.
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~-~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID-SVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec-ccccCCceeeEEEcCCCCEEEEecCC
Confidence 9888899999999999999999999888999975 59999999999877655 55667889999999987544443 46
Q ss_pred CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
..+.|.+|...+. ..+..+.+|...|..++++|+| ..+++|+.|.++++|++-...
T Consensus 409 s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 409 SENQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CCCcEEEEecccc---------ceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccCCC
Confidence 6778999999886 7888999999999999999998 999999999999999987653
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=205.00 Aligned_cols=230 Identities=22% Similarity=0.321 Sum_probs=195.5
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
+..+.+++|+.|..+.++|... .+....+.||+..|+.+.++|+ ...+++++
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s---------------------------~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aS 280 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPS---------------------------NQILATLKGHTKKITSVKFHKD-LDTVITAS 280 (506)
T ss_pred CCCCcceecCCCCceEEEecch---------------------------hhhhhhccCcceEEEEEEeccc-hhheeecC
Confidence 4468999999999999999865 4445567799999999999999 56899999
Q ss_pred cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--ecCCeEEEEeCCCC
Q 010769 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--VAADVESLAWDPHA 364 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~~ 364 (502)
.|..|+||.............|..+|+.+..+|.| .+|++++.||+..+.|++++........ ..-.+++.+|+|+|
T Consensus 281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG 359 (506)
T ss_pred CcceEEeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc
Confidence 99999999998888888888999999999999999 9999999999999999999887653332 12348999999987
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
- +|.+|+.||.|++||+... ..+..+.+|.++|..++|+.+| .+|++++.|+.|++||++..+....+.
T Consensus 360 L-ifgtgt~d~~vkiwdlks~---------~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 360 L-IFGTGTPDGVVKIWDLKSQ---------TNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred e-EEeccCCCceEEEEEcCCc---------cccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceee
Confidence 5 8999999999999999987 5778899999999999999998 999999999999999999877433444
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
.... ..+.++.|.+.|.| |+.+|.+=.|++++
T Consensus 429 l~~~-~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 429 LDEK-KEVNSLSFDQSGTY-LGIAGSDLQVYICK 460 (506)
T ss_pred cccc-ccceeEEEcCCCCe-EEeecceeEEEEEe
Confidence 4333 36999999999997 66677765555555
No 97
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=202.25 Aligned_cols=251 Identities=22% Similarity=0.349 Sum_probs=200.5
Q ss_pred CCCEEEEecCCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
+..++|+-+..|.|.||++...- .+.... ...+.+..++.+.+.+|...=..|.|||-....|+||.
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPG------------LEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCcc------------ccccccccCceEEecccCccceeeecccccccccccCc
Confidence 56778888889999999986321 111100 01233557788889999999999999996445688998
Q ss_pred cCCcEEEEECCCCee---eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc--cceEeecCCeEEEEeC
Q 010769 287 ADKQVKIWDVAAGKC---NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS--GFKWAVAADVESLAWD 361 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~v~~~ 361 (502)
.-+.|++|...++.- ...|.+|+..|-.|+|+|....+|++|+.||+|+|||+|.+... .....|.+.|+.+.|+
T Consensus 232 c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN 311 (440)
T ss_pred cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence 889999999988753 23467799999999999999899999999999999999987432 2245788999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC---
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--- 438 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--- 438 (502)
..-+ +|++|+.+|+++|||+|+.+. ..++..+.-|..+|++|.|+|.....|++++.|.+|.+||+....
T Consensus 312 r~~~-lLasG~DdGt~~iwDLR~~~~------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 312 RREP-LLASGGDDGTLSIWDLRQFKS------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred CCcc-eeeecCCCceEEEEEhhhccC------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 9766 899999999999999998754 578999999999999999999887899999999999999986421
Q ss_pred --------------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 439 --------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 439 --------------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
|.+++...+ ...|--+.|++.-+-+|++.+.+| +.||..
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred hhccccccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 223333333 345788999999888888888887 666643
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=211.05 Aligned_cols=245 Identities=20% Similarity=0.276 Sum_probs=198.7
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
-++...|++|+.|..|.+|++.... ......+.|..+.|+.+.|.++ +..++++
T Consensus 184 l~~sdtlatgg~Dr~Ik~W~v~~~k-------------------------~~~~~tLaGs~g~it~~d~d~~-~~~~iAa 237 (459)
T KOG0288|consen 184 LRNSDTLATGGSDRIIKLWNVLGEK-------------------------SELISTLAGSLGNITSIDFDSD-NKHVIAA 237 (459)
T ss_pred ccCcchhhhcchhhhhhhhhcccch-------------------------hhhhhhhhccCCCcceeeecCC-CceEEee
Confidence 3667899999999999999986422 2233355677789999999999 5688889
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
+.|+.+++|++...+...++.+|+++|+++.|.... ..+++|+.|.+|++||+....+... .-..+.+..|+.++
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt-~l~~S~cnDI~~~~--- 312 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKT-VLPGSQCNDIVCSI--- 312 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecc-ccccccccceEecc---
Confidence 999999999999999999999999999999998877 5599999999999999998666542 22334455565553
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
..+++|..|+.|++||.|.. .+......+. .|+++..++++ ..|.+++.|.++.+.|+++......+.-
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred eeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeec
Confidence 36899999999999999987 6677777665 89999999998 7788889999999999999875444433
Q ss_pred cCC--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCC
Q 010769 446 NPK--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYS 493 (502)
Q Consensus 446 ~~~--~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~ 493 (502)
.+. ....+.+.|||++.| +|+||.||.|+||++.++++....-....
T Consensus 382 ~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~s~s 430 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSLSTS 430 (459)
T ss_pred cccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEeccCCC
Confidence 221 234789999999997 89999999999999999998766554433
No 99
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.6e-24 Score=186.01 Aligned_cols=276 Identities=15% Similarity=0.229 Sum_probs=222.9
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~ 214 (502)
..|...|.+++|+-+|..|++|+.++ ++.||..+..... ....+.|+..+ -.+.|- .++..+|++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dk---tv~v~n~e~~r~~~~~~~~gh~~sv-----dql~w~------~~~~d~~at 82 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDK---TVSVWNLERDRFRKELVYRGHTDSV-----DQLCWD------PKHPDLFAT 82 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCC---ceEEEEecchhhhhhhcccCCCcch-----hhheeC------CCCCcceEE
Confidence 45778899999999999999999997 5678877654321 12344566444 355563 456889999
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
++.|.+|++||+....+..... .+..=.-+.|+|+ +.+++.++.|..|...
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~----------------------------~~~eni~i~wsp~-g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIE----------------------------TKGENINITWSPD-GEYIAVGNKDDRITFI 133 (313)
T ss_pred ecCCceEEEEEeccCcEEEEee----------------------------ccCcceEEEEcCC-CCEEEEecCcccEEEE
Confidence 9999999999997644332211 1222345789999 5699999999999999
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCC
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 374 (502)
|.++.+.+...+ ..-.+..+.|+-.+ .+|+.....|.|.|.....-+.+.....|+....|+.|+|+|. +|++|+.|
T Consensus 134 d~r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsAD 210 (313)
T KOG1407|consen 134 DARTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSAD 210 (313)
T ss_pred Eecccceeehhc-ccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeecccc
Confidence 999988877765 45678889999666 7777777789999999888888877889999999999999986 89999999
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEE
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFS 454 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 454 (502)
..+.+||+... .+++.+..+.-+|..++|+.+| ++||+||.|..|-|=++.++. .+...+ +.++.++
T Consensus 211 AlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd--~~~eI~-~~~~t~t 277 (313)
T KOG1407|consen 211 ALVSLWDVDEL---------ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD--RVWEIP-CEGPTFT 277 (313)
T ss_pred ceeeccChhHh---------hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC--eEEEee-ccCCcee
Confidence 99999999986 7888899999999999999998 999999999999999999998 455544 6789999
Q ss_pred EEEcCCCCcEEEEEeCC
Q 010769 455 VAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 455 ~~~spd~~~llasg~~d 471 (502)
++|+|..+ |||-++.|
T Consensus 278 VAWHPk~~-LLAyA~dd 293 (313)
T KOG1407|consen 278 VAWHPKRP-LLAYACDD 293 (313)
T ss_pred EEecCCCc-eeeEEecC
Confidence 99999998 67777665
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.3e-25 Score=208.74 Aligned_cols=286 Identities=17% Similarity=0.315 Sum_probs=231.8
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccC-CCc-ceeeeecCCCCCCCCCCEEE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIP-AFP-LCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~-~~~-~~~~w~~~~~~~s~~~~~la 213 (502)
-.|.+-|.+++|+...+.+.+|+..+ ++||.+.....+.+ ..+-++..+ .|. .|. ..|+|+.|+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgc----VKVWdis~pg~k~P--vsqLdcl~rdnyiRSck--------L~pdgrtLi 481 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGC----VKVWDISQPGNKSP--VSQLDCLNRDNYIRSCK--------LLPDGRTLI 481 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCe----EEEeeccCCCCCCc--cccccccCcccceeeeE--------ecCCCceEE
Confidence 45778889999999999999887653 79998877654221 122222211 111 121 268999999
Q ss_pred EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
+|+.-.++.|||+.... ..+...+....-++..|+.+|+ .++.++|+.||.|.|
T Consensus 482 vGGeastlsiWDLAapT-------------------------prikaeltssapaCyALa~spD-akvcFsccsdGnI~v 535 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPT-------------------------PRIKAELTSSAPACYALAISPD-AKVCFSCCSDGNIAV 535 (705)
T ss_pred eccccceeeeeeccCCC-------------------------cchhhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEE
Confidence 99999999999997522 2222233344567888999999 779999999999999
Q ss_pred EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 373 (502)
||+.+...++.|++|++.+.||..+++| ..|-+|+.|.+|+.||+|.++... .....+.|.++..+|.+. .+++|..
T Consensus 536 wDLhnq~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qhdF~SQIfSLg~cP~~d-WlavGMe 612 (705)
T KOG0639|consen 536 WDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTGD-WLAVGME 612 (705)
T ss_pred EEcccceeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hhhhhhhheecccCCCcc-ceeeecc
Confidence 9999999999999999999999999999 889999999999999999887654 556778899999999877 7999999
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 453 (502)
++.+.+..... ...+.+..|.+.|.++.|.+.| +++++.+.|+.+..|.+.-+. .++... ....|.
T Consensus 613 ns~vevlh~sk----------p~kyqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGa--siFqsk-E~SsVl 678 (705)
T KOG0639|consen 613 NSNVEVLHTSK----------PEKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGA--SIFQSK-ESSSVL 678 (705)
T ss_pred cCcEEEEecCC----------ccceeecccccEEEEEEecccC-ceeeecCchhhhhhccCcccc--ceeecc-ccCcce
Confidence 99999888774 4567788899999999999998 999999999999999998887 344443 457899
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 454 SVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 454 ~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
++..+.+.+| ++||+.|....||.+
T Consensus 679 sCDIS~ddky-IVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 679 SCDISFDDKY-IVTGSGDKKATVYEV 703 (705)
T ss_pred eeeeccCceE-EEecCCCcceEEEEE
Confidence 9999999995 999999988888875
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=6.1e-25 Score=189.21 Aligned_cols=226 Identities=18% Similarity=0.302 Sum_probs=196.9
Q ss_pred ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769 261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
.++||..+++.|.+|.+ +.+|+||+.|.++.||-..+|..+.++.+|++.|+|+....+. ..+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence 35689999999999999 5699999999999999988999999999999999999999888 899999999999999999
Q ss_pred CCCCccceEeecCCeEEEEeCCCCCCEEEEEe-----CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769 341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
+++... .+..+..|..+.|++.+. +++.++ ..+.|.++|++....... ...|...+..+.+.++.+-|.|.
T Consensus 83 tGk~la-~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 83 TGKQLA-TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDID--SEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred CCcEEE-EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhc--ccCceEEecCCccceeeeeeccc
Confidence 999776 788899999999999776 555543 456899999996532111 14678889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
+ .+|++|..||.|..||++++.. .+.....|...|+.++++|+..| +++|+.|.+-++||+.+-+.+.+....++-.
T Consensus 159 ~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN 235 (327)
T KOG0643|consen 159 G-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVN 235 (327)
T ss_pred C-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeeccccc
Confidence 8 9999999999999999999863 56666778889999999999995 9999999999999999998888776665543
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.2e-25 Score=203.66 Aligned_cols=254 Identities=19% Similarity=0.239 Sum_probs=205.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|+..++.+++.+|+|.-|++.++....-+.. .. . ..+...........+|...|.+++.+++ +.+||+|
T Consensus 151 s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~--~~-e------v~k~~~~~~k~~r~~h~keil~~avS~D-gkylatg 220 (479)
T KOG0299|consen 151 SPDDKRVFSASKDGTILKWDVLTGKKDRYIIE--RD-E------VLKSHGNPLKESRKGHVKEILTLAVSSD-GKYLATG 220 (479)
T ss_pred eccccceeecCCCcceeeeehhcCcccccccc--cc-h------hhhhccCCCCcccccccceeEEEEEcCC-CcEEEec
Confidence 79999999999999999999987653311100 00 0 0000101111111489999999999999 5699999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
+.|..|.||+..+.+.++.+.+|.+.|.+++|-... +.|++++.|++|++|++.....+..+++|+..|..+.-..-.
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re- 298 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE- 298 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc-
Confidence 999999999999999999999999999999998665 789999999999999999888888889999999999876643
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
..+.+|+.|+++++|.+.. .....+.+|.+.+-|++|-.+ ..+++||.+|.|.+|++...+|.++...
T Consensus 299 R~vtVGgrDrT~rlwKi~e----------esqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 299 RCVTVGGRDRTVRLWKIPE----------ESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred ceEEeccccceeEEEeccc----------cceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeec
Confidence 4677788999999999953 445567788999999999874 6899999999999999999987665544
Q ss_pred cCC----------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 446 NPK----------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 446 ~~~----------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
..+ ...|++++..|... |+|+|+.+|.|++|-+..+-.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc
Confidence 322 12789999999888 899999999999999998844
No 103
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=9.9e-25 Score=212.02 Aligned_cols=243 Identities=22% Similarity=0.353 Sum_probs=210.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
|.+...+++|+ .+.|.||+.++..+...+ ..+-+.+..|.|. ..++++|
T Consensus 382 S~d~~~~~Sga-~~SikiWn~~t~kciRTi-----------------------------~~~y~l~~~Fvpg-d~~Iv~G 430 (888)
T KOG0306|consen 382 SSDSILLASGA-GESIKIWNRDTLKCIRTI-----------------------------TCGYILASKFVPG-DRYIVLG 430 (888)
T ss_pred ecCceeeeecC-CCcEEEEEccCcceeEEe-----------------------------ccccEEEEEecCC-CceEEEe
Confidence 55666666665 579999999876665432 2347889999998 5699999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC------c------cceEeecC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------S------GFKWAVAA 353 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~------~~~~~~~~ 353 (502)
...|.+.+||+.+...+.++++|.+.|.+++.+|++ ..+++|+.|.+|++||..--.. . ........
T Consensus 431 ~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 431 TKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred ccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 999999999999999999999999999999999999 8899999999999999752111 0 12234567
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.|.|+.++|++. +++++--|.+|++|-+.+. +...++.+|.-||.|+.++|++ .+++|||.|.+|+||-
T Consensus 510 dvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl---------KFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWG 578 (888)
T KOG0306|consen 510 DVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL---------KFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWG 578 (888)
T ss_pred cEEEEEEcCCCc-EEEEEeccCeEEEEEecce---------eeeeeecccccceeEEeccCCc-CeEEeccCCCceEEec
Confidence 899999999976 8999999999999999987 7788899999999999999998 9999999999999999
Q ss_pred CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010769 434 LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
+.-+. |-.++.+|...|.++.|.|... ++.++|.|+.|+-||-..-+.++.+.+|...
T Consensus 579 LdFGD--CHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 579 LDFGD--CHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred cccch--hhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheeeccchhe
Confidence 99888 7888899999999999999776 6999999999999999999999888887654
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=208.87 Aligned_cols=212 Identities=20% Similarity=0.260 Sum_probs=181.9
Q ss_pred cCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769 262 KGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 262 ~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 341 (502)
+....+.|.++.|-.+ +.+||+|...|.|+|+|+.+...++.+.+|+.+|..+.|+|++...|++|+.|+.+++||+.+
T Consensus 64 ~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred HHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3346688999999999 559999999999999998887788899999999999999999989999999999999999998
Q ss_pred CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769 342 STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 342 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
........+|...|.|.+|+|..++++++|+-||.|++||+|.. ...+.. ..|..+|.++.+-|.| .+++
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~--------~~~v~e-lnhg~pVe~vl~lpsg-s~ia 212 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL--------TSRVVE-LNHGCPVESVLALPSG-SLIA 212 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC--------CceeEE-ecCCCceeeEEEcCCC-CEEE
Confidence 87644566889999999999998889999999999999999986 233444 4599999999999987 8888
Q ss_pred EEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+++. ..|+|||+.++.. .+.....|...|+|+.+..++. .|.+||-|+.+++||+.+.+.+..
T Consensus 213 sAgG-n~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 213 SAGG-NSVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHS 275 (487)
T ss_pred EcCC-CeEEEEEecCCce-ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEe
Confidence 8875 4699999997653 4444555889999999999997 689999999999999877665543
No 105
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=221.78 Aligned_cols=217 Identities=15% Similarity=0.270 Sum_probs=180.3
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCC---------------------------------------------
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--------------------------------------------- 298 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~--------------------------------------------- 298 (502)
.|.++|+++.|+++ +.|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 89999999999999 56999999999999998754
Q ss_pred ---------------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769 299 ---------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 299 ---------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 363 (502)
.++++.|.+|.+.|..|.|+.++ +|++++.|.+|+||++....++. .+.|..-|+||+|+|-
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~-~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLK-VFSHNDFVTCVAFNPV 420 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceee-EEecCCeeEEEEeccc
Confidence 02234567899999999999875 99999999999999999888776 7899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
+.++|++|+-||.|+||++... .+.....-..-|++++|.|+| +..+.|+.+|.+++|++...++..-.
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~----------~Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDK----------KVVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred CCCcEeecccccceEEeecCcC----------eeEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEee
Confidence 9999999999999999999864 333333344889999999998 99999999999999999988754443
Q ss_pred EecCC------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769 444 SRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 444 ~~~~~------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
.+..| ...|+.++|.|..+--|++.+.|..|||||.+....+..+-+.++..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 33322 23799999998765445566889999999998888777666555544
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=205.91 Aligned_cols=280 Identities=18% Similarity=0.255 Sum_probs=216.2
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCC
Q 010769 152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDE 231 (502)
Q Consensus 152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~ 231 (502)
.+++++..... .|.+|.+..... .+...++|+...|++- +|.|.||+.|+..|.|++|.+.++..
T Consensus 51 ~yllsaq~~rp--~l~vw~i~k~~~------~~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWelssG~L 115 (476)
T KOG0646|consen 51 EYLLSAQLKRP--LLHVWEILKKDQ------VVQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWELSSGIL 115 (476)
T ss_pred hheeeecccCc--cccccccCchhh------hhhhcccccceeeeec-------CCCceEEEeecccCcEEEEEeccccH
Confidence 46666665542 455555543332 3356778888888765 78899999999999999999987543
Q ss_pred CCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC---------CCeee
Q 010769 232 VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA---------AGKCN 302 (502)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~---------~~~~~ 302 (502)
...+.+|-..|+||.|+.+ +.+|+|||.||.|.+|.+. +-++.
T Consensus 116 ---------------------------L~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 116 ---------------------------LNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ---------------------------HHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 3345689999999999999 5699999999999999874 34678
Q ss_pred EEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769 303 LTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 303 ~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d 381 (502)
+.|..|+-+|+.+...+.+ ..+++|++.|.++++||+..+.... ....+..+.+++.+|. ...+++|+.+|.|.+.+
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-ti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-TITFPSSIKAVALDPA-ERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-EEecCCcceeEEEccc-ccEEEecCCcceEEeee
Confidence 8899999999999988763 3689999999999999999886554 6677889999999996 45899999999999998
Q ss_pred CCCCCCCCC-------CCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769 382 IRTAKSDPD-------STSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 452 (502)
Q Consensus 382 ~~~~~~~~~-------~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v 452 (502)
+.+...... ......+..+.+|.. +|+|++++-+| .+|++|+.||.|+|||+.+.+ ++.++....++|
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpV 322 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPV 322 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH--HHHHHhhhcccc
Confidence 876542111 111344566778887 99999999998 999999999999999999887 566666567899
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 453 FSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 453 ~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
+.+.+.|-.+-.+..-+..-.+-.|++
T Consensus 323 tnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 323 TNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred ceeEeeccccceecccccCccCCchHh
Confidence 999997765433332333334445544
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.6e-25 Score=192.47 Aligned_cols=318 Identities=17% Similarity=0.256 Sum_probs=241.9
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|.+.|..++.....+.+.+++.+. +-.||.++.+.. ..-|..|...+ .|+.+ ++.+.+++++
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADh---TA~iWs~Esg~C--L~~Y~GH~GSV----Nsikf-------h~s~~L~lTa 208 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADH---TARIWSLESGAC--LATYTGHTGSV----NSIKF-------HNSGLLLLTA 208 (481)
T ss_pred cccccceeeehhhcCCcceeeccccc---ceeEEeeccccc--eeeecccccce----eeEEe-------ccccceEEEc
Confidence 67999999999999999888888886 558888877653 23344554333 45544 7889999999
Q ss_pred cCCCcEEEeeCCC----CCCCCceeeeCCcchh---hhhh-c-----cccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 216 SMEPAIEIWDLDV----IDEVQPHVILGGIDEE---KKKK-K-----SKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 216 ~~dg~I~iwdl~~----~~~~~~~~~l~~~~~~---~~~~-~-----~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
+.|++..||.... .....|.-..+..... +... . ........+...+.+|...|.+..|... +..+
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~ 287 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQM 287 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC-ccee
Confidence 9999999998432 1111111111110000 0000 0 0111123445667899999999999987 5689
Q ss_pred EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccceEeecCCeEEEEeC
Q 010769 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFKWAVAADVESLAWD 361 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~v~~~ 361 (502)
+++|.|.+..+||++++.++..+.+|....+.++-+|.. +++++++.|.+.++||+|..-. ...+.+|...|+++.|.
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 999999999999999999999999999999999999998 9999999999999999995432 34566889999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
.+. .+++|+.|.+|++||+++. ..++.++. ..++++.++.+..+ .+|+.-..+..|++||++..+...
T Consensus 367 ~dd--~vVSgSDDrTvKvWdLrNM--------RsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 367 TDD--RVVSGSDDRTVKVWDLRNM--------RSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred cCC--ceeecCCCceEEEeeeccc--------cCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCcccc
Confidence 864 5999999999999999988 46676666 56789999999855 688888889999999998876422
Q ss_pred --EEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCc
Q 010769 442 --IASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 442 --~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~~ 483 (502)
.....+|...|.|++|..+.+. -|.++|.|..+.-|.+....
T Consensus 435 lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 435 LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 2356789899999999765421 16788999999999987643
No 108
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=8.7e-26 Score=192.55 Aligned_cols=245 Identities=22% Similarity=0.344 Sum_probs=195.7
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
+.|...|...++..+-...|+|..+= +-+||.--.+.. ..-+.|..++ -.+ +|+.+.++|++|
T Consensus 56 eghkgavw~~~l~~na~~aasaaadf---takvw~a~tgde--lhsf~hkhiv-----k~~-------af~~ds~~lltg 118 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADF---TAKVWDAVTGDE--LHSFEHKHIV-----KAV-------AFSQDSNYLLTG 118 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccc---hhhhhhhhhhhh--hhhhhhhhee-----eeE-------Eecccchhhhcc
Confidence 56888898888888877777776653 346665544432 1223343332 233 348899999999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+++..+||||++..+. +...+.+|++.|..+-|... .+.++|.+.|++||+||
T Consensus 119 g~ekllrvfdln~p~A--------------------------pp~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPKA--------------------------PPKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWD 171 (334)
T ss_pred chHHHhhhhhccCCCC--------------------------CchhhcCCCCcceeEEEecc-CceEEeeccCCceEEEE
Confidence 9999999999975332 22345689999999999887 56888889999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 375 (502)
.++++.++++. ...+|+++.++++| . +++....+.|.+||..+...+. ....+..|++.+++|.. .++++|+.|.
T Consensus 172 ~rTgt~v~sL~-~~s~VtSlEvs~dG-~-ilTia~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k-~~fVaGged~ 246 (334)
T KOG0278|consen 172 HRTGTEVQSLE-FNSPVTSLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK-EFFVAGGEDF 246 (334)
T ss_pred eccCcEEEEEe-cCCCCcceeeccCC-C-EEEEecCceeEEecccccccee-eccCccccccccccCCC-ceEEecCcce
Confidence 99999999997 57789999999998 4 5666778899999999877654 55677889999999986 5899999999
Q ss_pred eEEEEECCCCCCCCCCCCCCccEE-EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 376 TIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 376 ~i~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
.++.||..++ .-+.. ..+|.++|.|+.|+|+| .+.++||.||+|++|.+..++.
T Consensus 247 ~~~kfDy~Tg---------eEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 247 KVYKFDYNTG---------EEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEEeccCC---------ceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence 9999999998 33333 48999999999999998 8999999999999999877653
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=176.01 Aligned_cols=249 Identities=22% Similarity=0.332 Sum_probs=191.3
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
+|+|.|.+.|+|+...++||-.....-.+...... .+..........+.|.+.|.|.+|+|. +.+|+
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea------------~~~pp~v~~kr~khhkgsiyc~~ws~~-gelia 105 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA------------AKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIA 105 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCccccccc------------ccCCCeEEeeeccccCccEEEEEecCc-cCeEE
Confidence 34899999999999999999765432221110000 000001111223468999999999999 56999
Q ss_pred EEecCCcEEEEECCCCee-----eEEeccCCCCeEEEEEcCC---CCcEEEEEE-CCCcEEEEeCCCCCCccceEeecCC
Q 010769 284 SASADKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHH---SPQILLSGS-FDRSVVMKDARISTHSGFKWAVAAD 354 (502)
Q Consensus 284 sgs~Dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~ 354 (502)
+||.|++|++.-++...+ -..|..|.+.|..++|..+ ++.+|++++ .|..|++-|...++......+|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 999999999987765433 2356789999999999643 335666654 4778888898888887777888888
Q ss_pred eEEE-EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe--cC-----CCCeeEEEEcCCCCCEEEEEeCC
Q 010769 355 VESL-AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH--AH-----DKAVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 355 v~~v-~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~h-----~~~v~~l~~sp~~~~~l~t~s~d 426 (502)
|.++ .|+ ...|++|+.|.+|++||+|-. .++..+. -| .+.|.+++..|.| ++|++|-.|
T Consensus 186 ilalyswn---~~m~~sgsqdktirfwdlrv~---------~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~d 252 (350)
T KOG0641|consen 186 ILALYSWN---GAMFASGSQDKTIRFWDLRVN---------SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHAD 252 (350)
T ss_pred EEEEEEec---CcEEEccCCCceEEEEeeecc---------ceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCC
Confidence 8877 465 348999999999999999976 3444332 12 3679999999998 999999999
Q ss_pred CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
....+||++.++ ++..+.+|...|.|+.|+|...| |.+++.|..|++-|+..
T Consensus 253 ssc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 253 SSCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecccceEEEeeccc
Confidence 999999999998 68889999999999999999886 77899999999999864
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.1e-24 Score=218.60 Aligned_cols=251 Identities=21% Similarity=0.301 Sum_probs=202.1
Q ss_pred CCCCCEEEEec--CCCcEEEeeCCCCCC-CCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 206 REKGNFMAVGS--MEPAIEIWDLDVIDE-VQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 206 s~~~~~la~g~--~dg~I~iwdl~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
+|+|..+|+|+ .||.++||+.+.... ... +.............|.+.|+|+.|+|+ +.+|
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------------~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~l 84 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------------KNENLPKHLCTMDDHDGSVNCVRFSPD-GSYL 84 (942)
T ss_pred cCCceeEecCCccccccceeeccccccchhhh----------------hhcccchhheeeccccCceeEEEECCC-CCeE
Confidence 89999999999 999999999864221 100 011124455567789999999999999 5699
Q ss_pred EEEecCCcEEEEECCC------------------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769 283 ASASADKQVKIWDVAA------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 344 (502)
|+||.|+.|.||.... .+++..+.+|...|..++|+|++ .+|++++.|++|.+|+.++...
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee
Confidence 9999999999998762 24678889999999999999988 9999999999999999999988
Q ss_pred ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec------CCCCeeEEEEcCCCCC
Q 010769 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA------HDKAVCTISYNPLVPN 418 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~sp~~~~ 418 (502)
......|.+.|-.+.|.|-|. +|++-+.|++|++|.+... .....+.. -......+.|+|+| .
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG-~ 232 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDG-H 232 (942)
T ss_pred eeeeecccccccceEECCccC-eeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCc-C
Confidence 888889999999999999876 8999999999999997664 22233322 23467899999999 8
Q ss_pred EEEEEeC----CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC--------C-------Cc-EEEEEeCCCcEEEEE
Q 010769 419 LLATGST----DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED--------S-------PF-VLAIGGSKGKLEIWD 478 (502)
Q Consensus 419 ~l~t~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd--------~-------~~-llasg~~dg~i~vwd 478 (502)
+|++... -.++.|.+-.+.+ .-..+-+|.+++.++.|+|. | .| ++|+|+.|++|.||.
T Consensus 233 ~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred eecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 8887643 3457888776555 56778899999999999983 1 22 789999999999999
Q ss_pred CCCCccccc
Q 010769 479 TLSDAGISN 487 (502)
Q Consensus 479 ~~~~~~~~~ 487 (502)
....+++..
T Consensus 311 T~~~RPl~v 319 (942)
T KOG0973|consen 311 TALPRPLFV 319 (942)
T ss_pred cCCCCchhh
Confidence 977766543
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.7e-24 Score=185.99 Aligned_cols=245 Identities=20% Similarity=0.311 Sum_probs=188.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-cCCCCcEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~s 284 (502)
.+.|+.+|+|+.|++|.|||+..... ........+.|.+.|..+.| +|..+..+|+
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~~s~-----------------------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTSDSG-----------------------TWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred cccCceeeeccCCCcEEEEeccCCCC-----------------------ceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence 56799999999999999999854322 23444456689999999999 5777889999
Q ss_pred EecCCcEEEEECC---------CCeeeEEeccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEeCCCCCCcc--------
Q 010769 285 ASADKQVKIWDVA---------AGKCNLTLEHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKDARISTHSG-------- 346 (502)
Q Consensus 285 gs~Dg~v~vwd~~---------~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~-------- 346 (502)
||.|+++.||.=. ......++....+.|+.++|.|.. +-.|++++.||.++||+.-......
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 9999999999742 112345666678899999999853 2678999999999999865432211
Q ss_pred -----ceEeecCCeEEEEeCCC--CCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769 347 -----FKWAVAADVESLAWDPH--AEHSFVVSLED-----GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 347 -----~~~~~~~~v~~v~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
....+.....|+.|+|. .+.+|++|+.+ +.++||........ ...+..+..|+.+|+.|+|.|
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeecc
Confidence 01124566889999974 23468888766 47888877654210 245667789999999999999
Q ss_pred CCC---CEEEEEeCCCcEEEEECCCC------------------CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc
Q 010769 415 LVP---NLLATGSTDKMVKLWDLSNN------------------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 473 (502)
Q Consensus 415 ~~~---~~l~t~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~ 473 (502)
+.+ .+||+++.|| |+||.+... ....+..+..|.+.|+.+.|+-.|. +|++.|.||.
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~ 311 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGC 311 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCce
Confidence 743 4799999999 999998741 1234666889999999999999998 7999999999
Q ss_pred EEEEECC
Q 010769 474 LEIWDTL 480 (502)
Q Consensus 474 i~vwd~~ 480 (502)
||+|...
T Consensus 312 VRLWkan 318 (361)
T KOG2445|consen 312 VRLWKAN 318 (361)
T ss_pred eeehhhh
Confidence 9999874
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.1e-25 Score=192.98 Aligned_cols=246 Identities=22% Similarity=0.329 Sum_probs=206.7
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
....+.+++.|.+.+||.++++.|+. .+.||.+.|+++.|++. +.+++++|.
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL~---------------------------~Y~GH~GSVNsikfh~s-~~L~lTaSG 210 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACLA---------------------------TYTGHTGSVNSIKFHNS-GLLLLTASG 210 (481)
T ss_pred CCcceeecccccceeEEeecccccee---------------------------eecccccceeeEEeccc-cceEEEccC
Confidence 35589999999999999999866654 45699999999999998 679999999
Q ss_pred CCcEEEEECC------C----------------------------------CeeeEEeccCCCCeEEEEEcCCCCcEEEE
Q 010769 288 DKQVKIWDVA------A----------------------------------GKCNLTLEHHTDKVQAVAWNHHSPQILLS 327 (502)
Q Consensus 288 Dg~v~vwd~~------~----------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 327 (502)
|++..||... . ..++..+.+|.+.|.+..|-..+ ..+++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vT 289 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVT 289 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeee
Confidence 9999999721 0 12456778999999999999888 88999
Q ss_pred EECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 328 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
++.|.+..+||+.++.....+.+|....+.++-+|.. .++++++.|.+.++||+|.. ...+..+++|...|
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--------I~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--------IQSVAVFQGHTDTV 360 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh--------cceeeeecccccce
Confidence 9999999999999999998889999999999999975 48999999999999999976 47788899999999
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+++.|..+ ..+++|+.|.+|+|||+++.+. .+.++.. ..+++.++.+..++ ++|.--.+..|++||++.....+-
T Consensus 361 TS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs-plATIRt-dS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 361 TSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS-PLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred eEEEEecC--CceeecCCCceEEEeeeccccC-cceeeec-CCccceeEeecCCc-eEEeccCCceEEEEecCCCccccC
Confidence 99999985 5799999999999999999873 3444432 46799999999888 688888888999999977665443
Q ss_pred cccCCCCCC
Q 010769 488 RFSKYSKPK 496 (502)
Q Consensus 488 ~~~~~~~~~ 496 (502)
.-..+.+++
T Consensus 436 PrtsRqgHr 444 (481)
T KOG0300|consen 436 PRTSRQGHR 444 (481)
T ss_pred Ccccccccc
Confidence 334444444
No 113
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-24 Score=196.06 Aligned_cols=242 Identities=20% Similarity=0.266 Sum_probs=187.2
Q ss_pred CceEEEEEecCCcceeEEEEEecCCCCCCceee-------------------eeccccCCCcceeeeecCCCCCCCCCCE
Q 010769 151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYV-------------------HHHIIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~w~~~~~~~s~~~~~ 211 (502)
|+++|.|+.+. .+.||.++....-.|.+.. +|.-. .+.+.|.. .-.+.
T Consensus 192 gNyvAiGtmdp---~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTda----vl~Ls~n~------~~~nV 258 (463)
T KOG0270|consen 192 GNYVAIGTMDP---EIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDA----VLALSWNR------NFRNV 258 (463)
T ss_pred cceEEEeccCc---eeEEeccccccccccceeechhhhhhhhhhcccccccccchHH----HHHHHhcc------cccee
Confidence 78999999987 6799988766542222221 12111 14566642 24789
Q ss_pred EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 291 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v 291 (502)
||+||.|.+|.+||++++++.. .+..|...|.++.|+|..+.+|++||.|++|
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred EEecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 9999999999999998755433 3346999999999999989999999999999
Q ss_pred EEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC-CccceEeecCCeEEEEeCCCCCCEEEE
Q 010769 292 KIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 292 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~ 370 (502)
.+.|++........-...+.|-.++|+|.....++++..||+|+-+|+|... +......|.++|.++++++..++++++
T Consensus 312 ~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 312 ALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred EeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 9999985332222222467899999999998999999999999999999874 455566899999999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
++.++.|++|++..... +.+....-.-+...|+++.|+-+.+|+.|+..+.++|||+.+..+
T Consensus 392 ~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccceEEEEeecCCCC-------cccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 99999999999976521 222211112234788899998888999999999999999988763
No 114
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=195.00 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=182.5
Q ss_pred cccccccCCcccceeeEEecCCC-CcEEEEEecCCcEEEEECC----------------CCeeeEEeccCCCCeEEEEEc
Q 010769 256 SSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVA----------------AGKCNLTLEHHTDKVQAVAWN 318 (502)
Q Consensus 256 ~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd~~----------------~~~~~~~~~~h~~~v~~l~~~ 318 (502)
..+.....+|.+.|+.+.-.+.+ ..+.++-+..|.|.||++. ..+++.++.+|...-..|+|+
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence 33444455788888888877663 4577777889999999985 235678889999999999999
Q ss_pred CCCCcEEEEEECCCcEEEEeCCCCCC---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCC
Q 010769 319 HHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 395 (502)
Q Consensus 319 ~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 395 (502)
|-....|++|..-+.|++|...++.- ...+..|...|..++|+|....+|++|+.||+|+|||+|.+.. +
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~ 293 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------K 293 (440)
T ss_pred cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------c
Confidence 96656799999999999999887542 1234568899999999999888999999999999999998743 4
Q ss_pred ccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcE
Q 010769 396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL 474 (502)
Q Consensus 396 ~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i 474 (502)
+.....+|.+-|+.|+|+..- .+||+|+.||+++|||++..+. ..+..+..|..+|+++.|+|....+|+++|.|..|
T Consensus 294 ~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 294 AAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred ceeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 445558999999999999988 4999999999999999998553 35778888999999999999877789999999999
Q ss_pred EEEECCCCc
Q 010769 475 EIWDTLSDA 483 (502)
Q Consensus 475 ~vwd~~~~~ 483 (502)
.|||+....
T Consensus 373 tiWDlsvE~ 381 (440)
T KOG0302|consen 373 TIWDLSVEA 381 (440)
T ss_pred EEEEeeccC
Confidence 999997544
No 115
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6.1e-24 Score=186.92 Aligned_cols=240 Identities=18% Similarity=0.247 Sum_probs=184.8
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|+|.++.|++++.||++++|++....... ...|..++++++|.+. ..+++
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~~----------------------------~~~~~~plL~c~F~d~--~~~~~ 70 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLKL----------------------------KFKHGAPLLDCAFADE--STIVT 70 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhhh----------------------------heecCCceeeeeccCC--ceEEE
Confidence 37888999999999999999997532211 1248899999999986 47999
Q ss_pred EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~ 364 (502)
|+.||.|+++|++++.... +..|..+|+||.+++.. ..+++|+.|++|++||.|...... .......|.++....
T Consensus 71 G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v~g-- 145 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDVSG-- 145 (323)
T ss_pred eccCceEEEEEecCCccee-eccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccc-ccccCceEEEEeccC--
Confidence 9999999999999887544 55699999999999876 789999999999999999744333 334455788887763
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc-EEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC--eeE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS-FTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ--PSC 441 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~--~~~ 441 (502)
+.|++|+.+..|.+||+|+... +. ..-..-.-.+.|+++.|++ .-++++|-||.|.+=.+.... ...
T Consensus 146 -~~LvVg~~~r~v~iyDLRn~~~--------~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 146 -NRLVVGTSDRKVLIYDLRNLDE--------PFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred -CEEEEeecCceEEEEEcccccc--------hhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhh
Confidence 4799999999999999998742 22 1223345678999999976 557778889998875554431 112
Q ss_pred EEEecCCC---------CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769 442 IASRNPKA---------GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 442 ~~~~~~~~---------~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
.+.+..|. .+|++|+|+|-.. .|||||.||.|.+||+.+.+.+.++..
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhccC
Confidence 33333342 3799999999977 599999999999999999888765443
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.1e-24 Score=196.01 Aligned_cols=293 Identities=15% Similarity=0.225 Sum_probs=222.9
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEecC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~-~la~g~~ 217 (502)
...|++++|||.-.+|++|+.++ .++||-++.... . . -+...+..+|+..+- |.|+|. .+++++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~---~lrifqvDGk~N---~-~-lqS~~l~~fPi~~a~------f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDG---TLRIFQVDGKVN---P-K-LQSIHLEKFPIQKAE------FAPNGHSVIFTSGR 278 (514)
T ss_pred cCCceEEEecCCCceEEEecCCC---cEEEEEecCccC---h-h-heeeeeccCccceee------ecCCCceEEEeccc
Confidence 35799999999999999999997 678888776654 2 1 122234555553322 268888 9999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc-ccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH-TDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
...++.||+.+.... ....+.++ ...+.....+++ +++|+..+..|.|.|...
T Consensus 279 rky~ysyDle~ak~~-------------------------k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVT-------------------------KLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHA 332 (514)
T ss_pred ceEEEEeeccccccc-------------------------cccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehh
Confidence 999999999653211 11112233 245677788898 669999999999999999
Q ss_pred CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCe--EEEEeCCCCCCEEEEEeCC
Q 010769 297 AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADV--ESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 297 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~v~~~p~~~~~l~~~~~d 374 (502)
.++..+.+++ -.+.|..++|+.++ ..|++++.+|.|.+||++...+.. .+...+.| +++|.++++. +|++|+..
T Consensus 333 kT~eli~s~K-ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~-rf~D~G~v~gts~~~S~ng~-ylA~GS~~ 408 (514)
T KOG2055|consen 333 KTKELITSFK-IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLH-RFVDDGSVHGTSLCISLNGS-YLATGSDS 408 (514)
T ss_pred hhhhhhheee-eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEE-EEeecCccceeeeeecCCCc-eEEeccCc
Confidence 9999999987 57899999999998 788888889999999999986554 55555544 5667778766 89999999
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEE-EecCCCCC
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIA-SRNPKAGA 451 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~-~~~~~~~~ 451 (502)
|.|.|||..+...... .+|+..+..-...|++++|+|+. .+||.+|. ...+++-.+.+.....-+ ......+.
T Consensus 409 GiVNIYd~~s~~~s~~---PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~ 484 (514)
T KOG2055|consen 409 GIVNIYDGNSCFASTN---PKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH 484 (514)
T ss_pred ceEEEeccchhhccCC---CCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence 9999999765432222 47888888888999999999998 88888876 567888888765411111 11334567
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 452 v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
|+|++|+|.+.| ||.|...|.+.+|.+.
T Consensus 485 vtc~aFSP~sG~-lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 485 VTCMAFSPNSGY-LAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEEecCCCce-EEeecCCCceeeEeec
Confidence 999999999986 9999999999999874
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.6e-24 Score=187.71 Aligned_cols=219 Identities=23% Similarity=0.393 Sum_probs=183.6
Q ss_pred CCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe------------eeE---EeccCCCCeEEEEEcCCCCcEEEE
Q 010769 263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK------------CNL---TLEHHTDKVQAVAWNHHSPQILLS 327 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~------------~~~---~~~~h~~~v~~l~~~~~~~~~l~s 327 (502)
..|.+.|++|...+..+.++++|+.||.|.|||+++.. |+. .-.+|.-.|.++.|-|-..-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 36889999999999878899999999999999997542 110 114688899999999988789999
Q ss_pred EECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 405 (502)
Q Consensus 328 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~ 405 (502)
++.|.++++||..+.+... .+..++.|.+-+|+|-. ..++++|+.+-.|++.|+..+ .....+.+|..
T Consensus 120 sSFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~ 189 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRD 189 (397)
T ss_pred ccccceEEEeecccceeeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccC
Confidence 9999999999999876544 67778889999998853 357888899999999999997 78899999999
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC-------------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ-------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg 472 (502)
.|.++.|+|.....|+||+.||.|++||++... +..+.....|.+.|++++|+.++.+ +++++.|.
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~ 268 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDD 268 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCcc
Confidence 999999999988899999999999999998641 1122335578889999999999997 78888999
Q ss_pred cEEEEECCCCccccccccCC
Q 010769 473 KLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~ 492 (502)
.+++|+..+|....+.|+..
T Consensus 269 r~r~wn~~~G~ntl~~~g~~ 288 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPI 288 (397)
T ss_pred ceEEeecccCcccccccccc
Confidence 99999999988766655543
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=194.15 Aligned_cols=241 Identities=17% Similarity=0.239 Sum_probs=193.7
Q ss_pred CCCEEEEecC-CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 208 KGNFMAVGSM-EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~-dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
.+.|++++.. .+.|.+|.+...+.+.. ..--.++|.+|+-+|. +++|+.|.
T Consensus 49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q---------------------------~~v~Pg~v~al~s~n~-G~~l~ag~ 100 (476)
T KOG0646|consen 49 NNEYLLSAQLKRPLLHVWEILKKDQVVQ---------------------------YIVLPGPVHALASSNL-GYFLLAGT 100 (476)
T ss_pred chhheeeecccCccccccccCchhhhhh---------------------------hcccccceeeeecCCC-ceEEEeec
Confidence 3567776654 46899999864322221 1124578999999999 67888888
Q ss_pred cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC---------CCCccceEeecCCeEE
Q 010769 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI---------STHSGFKWAVAADVES 357 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~ 357 (502)
..|.|++|.+.+|..+..+.+|-..|+|+.|+-++ .+|+||+.||.|.+|.+.. .........|.-+|+.
T Consensus 101 i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITD 179 (476)
T KOG0646|consen 101 ISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITD 179 (476)
T ss_pred ccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEE
Confidence 99999999999999999999999999999999999 9999999999999998642 2223334467778998
Q ss_pred EEeCCC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 358 LAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 358 v~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
+...+. ....+++++.|.++++||+..+ ..+.++. ....+.+++..|.. +.++.|+.+|.|.+.++..
T Consensus 180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---------~LLlti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 180 LQIGSGGTNARLYTASEDRTIKLWDLSLG---------VLLLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFK 248 (476)
T ss_pred EEecCCCccceEEEecCCceEEEEEeccc---------eeeEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhc
Confidence 888764 2347999999999999999987 4444444 56789999999987 9999999999999988755
Q ss_pred CC--------------eeEEEEecCCCC--CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769 437 NQ--------------PSCIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 437 ~~--------------~~~~~~~~~~~~--~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
.. ...+..+.+|.+ .|+|++.+-||. +|++|+.||.++|||+.+.++++++.
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence 32 123455677877 999999999999 79999999999999999999988765
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=2.6e-22 Score=192.03 Aligned_cols=278 Identities=13% Similarity=0.107 Sum_probs=185.6
Q ss_pred ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEE-EEecCCCcEEEeeCCCCC
Q 010769 152 AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFM-AVGSMEPAIEIWDLDVID 230 (502)
Q Consensus 152 ~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~l-a~g~~dg~I~iwdl~~~~ 230 (502)
+++++++.++ .|++|+...........++ .-+.++.| +|+++.+ ++++.++.|++||+....
T Consensus 2 ~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~-----~~~~~l~~-------~~dg~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKDN-----TISVIDTATLEVTRTFPVG-----QRPRGITL-------SKDGKLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCCC-----EEEEEECCCCceEEEEECC-----CCCCceEE-------CCCCCEEEEEECCCCeEEEEECCCCc
Confidence 5677777666 4444544333111111111 12345555 7888876 667788999999987532
Q ss_pred CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCC
Q 010769 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD 310 (502)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~ 310 (502)
... .+..+. .+..++|+|++..++++++.++.|++||+.+++.+..+.. ..
T Consensus 65 ~~~---------------------------~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~ 115 (300)
T TIGR03866 65 VIG---------------------------TLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GV 115 (300)
T ss_pred EEE---------------------------eccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CC
Confidence 211 111222 2467899999654555667789999999999888877763 34
Q ss_pred CeEEEEEcCCCCcEEEEEECCC-cEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 010769 311 KVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 389 (502)
.+.+++|+|++ .++++++.++ .+.+||.++..... .......+.+++|+|++..+++++..++.|++||+++.
T Consensus 116 ~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---- 189 (300)
T TIGR03866 116 EPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVD-NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---- 189 (300)
T ss_pred CcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEE-EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc----
Confidence 56889999999 7777777665 56778987765433 22334456789999998754455567999999999876
Q ss_pred CCCCCCccEEEecC-------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769 390 DSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 390 ~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
+.+..+..+ ......++|+|++..++++.+.++.|.+||+.+++... .. .+...+.+++|+|++.
T Consensus 190 -----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--~~-~~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 190 -----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--YL-LVGQRVWQLAFTPDEK 261 (300)
T ss_pred -----eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--EE-EeCCCcceEEECCCCC
Confidence 333332211 11235688999984444555667789999998876432 22 2335789999999999
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccc
Q 010769 463 FVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 463 ~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
+++++++.+|.|++||+.+++.+.++.
T Consensus 262 ~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 262 YLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 755445678999999999999877664
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=202.03 Aligned_cols=318 Identities=19% Similarity=0.265 Sum_probs=220.0
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCceeeeeccccCCCcceeeeecCCCCCCCC----CCEEEE
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPNLYVHHHIIIPAFPLCMAWLDCPLKDREK----GNFMAV 214 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~----~~~la~ 214 (502)
.-+++|.|+...|.+.-++. .+|+|+..... .......| .+-.+.++-++|.+.-++. ...+++
T Consensus 327 ~IA~~Fdet~~klscVYndh-----SlYvWDvrD~~kvgk~~s~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~cF~T 397 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDH-----SLYVWDVRDVNKVGKCSSMLYH----SACIWDVENLPCNVHSPTAACLPRGCFTT 397 (1080)
T ss_pred eeEEEecCCCceEEEEEcCc-----eEEEEeccccccccceeeeeec----cceeeeeccccccccCcccccCCccceeE
Confidence 35788999999999998886 55555433321 11111222 1222444444544432221 334889
Q ss_pred ecCCCcEEEeeCCCC--CCCCceeeeCCcch--------hhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVI--DEVQPHVILGGIDE--------EKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 215 g~~dg~I~iwdl~~~--~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
++.|++||+|+++.. ..++...++...-. .+........--.+-..........|.+|+.+|+ +.+||+
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAs 476 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLAS 476 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceecc
Confidence 999999999999752 11211122211000 0000000000000111122244567999999999 569999
Q ss_pred EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCC-CccceEeecCCeEE----
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARIST-HSGFKWAVAADVES---- 357 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~---- 357 (502)
|..-|+++||++..-.....+..|...|.|+.|+.- +..+|++++.|+.|.+||+...- .....-.|.+.|++
T Consensus 477 GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 477 GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 999999999999999888889999999999999842 33789999999999999986432 12222233333433
Q ss_pred ---------------------------------------------EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCC
Q 010769 358 ---------------------------------------------LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 392 (502)
Q Consensus 358 ---------------------------------------------v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 392 (502)
++..|..+ ++++++.|..|+||++.++
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg------- 628 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG------- 628 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc-------
Confidence 44445433 7899999999999999988
Q ss_pred CCCccEEE---ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769 393 SQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 393 ~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~ 469 (502)
+....+ +.|.+....+...|.| .||+|.+.|+++.++|+.+++ ++....+|...|+.+.|.+|.++ |++.+
T Consensus 629 --Kq~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCkH-lISvs 702 (1080)
T KOG1408|consen 629 --KQVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCKH-LISVS 702 (1080)
T ss_pred --ceeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccchh-heeec
Confidence 444444 4577888999999998 999999999999999999998 88899999999999999999996 77888
Q ss_pred CCCcEEEEECCCCc
Q 010769 470 SKGKLEIWDTLSDA 483 (502)
Q Consensus 470 ~dg~i~vwd~~~~~ 483 (502)
.||.|.||.+....
T Consensus 703 gDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 703 GDGCIFVWKLPLTM 716 (1080)
T ss_pred CCceEEEEECchhH
Confidence 99999999996543
No 121
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=193.97 Aligned_cols=245 Identities=17% Similarity=0.220 Sum_probs=196.0
Q ss_pred ceeeeeccccCCCcceeeeecCCCCCCCCC-CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCcccc
Q 010769 180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKG-NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSI 258 (502)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~-~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 258 (502)
.|.+|.+.+ .|++- +|+. ..+|+|+.||.|+|||+... ..
T Consensus 61 ~L~gHrdGV-----~~lak-------hp~~ls~~aSGs~DG~VkiWnlsqR---------------------------~~ 101 (433)
T KOG0268|consen 61 SLDGHRDGV-----SCLAK-------HPNKLSTVASGSCDGEVKIWNLSQR---------------------------EC 101 (433)
T ss_pred hcccccccc-----chhhc-------CcchhhhhhccccCceEEEEehhhh---------------------------hh
Confidence 455666655 46554 4543 78999999999999999753 33
Q ss_pred ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 338 (502)
...+..|.+.|.+|++... .+++++.|.+|+.|.+.. .+++++-+ ...++.+.-+..+ ..++|++. .|.|||
T Consensus 102 ~~~f~AH~G~V~Gi~v~~~---~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQT---SFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWD 173 (433)
T ss_pred hheeecccCceeeEEeccc---ceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecc
Confidence 3456689999999999873 688999999999999775 46777753 5567778777766 78888875 599999
Q ss_pred CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
.+...++....-....|.++.|+|....+|+++..|+.|.+||+|+. .++..+. ....-+.|+|+|.+ .
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~---------~Pl~KVi-~~mRTN~IswnPea-f 242 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA---------SPLKKVI-LTMRTNTICWNPEA-F 242 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC---------Cccceee-eeccccceecCccc-c
Confidence 98777665444445669999999988888888999999999999997 5555443 23345789999965 8
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 419 LLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
.+++|+.|..++.||++... ..+..+.+|.+.|..+.|+|.|.- +++||.|.+|+||.++.+..
T Consensus 243 nF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ceeeccccccceehhhhhhc-ccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcc
Confidence 88999999999999999876 356778899999999999999995 99999999999999987654
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=204.40 Aligned_cols=324 Identities=16% Similarity=0.266 Sum_probs=242.6
Q ss_pred CcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC
Q 010769 129 PYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK 208 (502)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~ 208 (502)
+.+.....-|.+.|....|.|....|++++.+. .+++|+++.+.+..+.|. . .....+.|+|+.+. ..+
T Consensus 278 kl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn---Slk~~vfD~~dg~pR~LR-~-R~GHs~Pp~~irfy------~~~ 346 (910)
T KOG1539|consen 278 KLINVTRNAHYGSVTGATFLPGEPVLVTAGADN---SLKVWVFDSGDGVPRLLR-S-RGGHSAPPSCIRFY------GSQ 346 (910)
T ss_pred eeeeeeeccccCCcccceecCCCceEeeccCCC---ceeEEEeeCCCCcchhee-e-ccCCCCCchheeee------ccC
Confidence 333333445889999999999999999999885 899999997665322222 1 12235667999886 457
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCce-------------------------eeeCCcchhhhhh----ccccC------
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPH-------------------------VILGGIDEEKKKK----KSKKG------ 253 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~-------------------------~~l~~~~~~~~~~----~~~~~------ 253 (502)
|.++.+++.|++.+.+++.....-+.. ..+.......+.| ...+.
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 999999999999999887432111110 0000000000000 00000
Q ss_pred ---Ccccc-cc-----ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCC
Q 010769 254 ---KKSSI-KY-----KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHS 321 (502)
Q Consensus 254 ---~~~~~-~~-----~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~ 321 (502)
+.+.. .+ .++.-...+++++.++- +++.+.|+..|+|-+|++++|-...+| ..|..+|+.++....+
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n 505 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN 505 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence 00100 11 11123367889999998 679999999999999999999988888 5899999999999888
Q ss_pred CcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe
Q 010769 322 PQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401 (502)
Q Consensus 322 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 401 (502)
+.+++++.+|.+.+||........ .+.....+.++..+.... +++++..+-.|+++|+.+. +.++.+.
T Consensus 506 -~~~vsa~~~Gilkfw~f~~k~l~~-~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------kvvR~f~ 573 (910)
T KOG1539|consen 506 -RLLVSAGADGILKFWDFKKKVLKK-SLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------KVVREFW 573 (910)
T ss_pred -ceEEEccCcceEEEEecCCcceee-eeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------hhhHHhh
Confidence 899999999999999998766433 667788888998888655 7889999999999999986 7889999
Q ss_pred cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-CcEEEEECC
Q 010769 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTL 480 (502)
Q Consensus 402 ~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-g~i~vwd~~ 480 (502)
+|...|+.++|||+| ++|++++.|++|++||+.++.. +-.+ .-..+++++.|+|+|.| ||+...| ..|++|--.
T Consensus 574 gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l--ID~~-~vd~~~~sls~SPngD~-LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL--IDGL-LVDSPCTSLSFSPNGDF-LATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce--eeeE-ecCCcceeeEECCCCCE-EEEEEecCceEEEEEch
Confidence 999999999999999 9999999999999999999973 3222 23467999999999996 8888887 679999654
Q ss_pred C
Q 010769 481 S 481 (502)
Q Consensus 481 ~ 481 (502)
+
T Consensus 649 s 649 (910)
T KOG1539|consen 649 S 649 (910)
T ss_pred h
Confidence 3
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2.1e-23 Score=182.05 Aligned_cols=217 Identities=21% Similarity=0.327 Sum_probs=173.7
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.|+|+++|+.||.|.|||+......+.-.... +.+....+....+|.-.|.++.|-|-...++.++|.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~------------k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSF 122 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIA------------KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSF 122 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhcccee------------heeeeccccCCccceeeeeeeEEeeecCceeecccc
Confidence 59999999999999999997544222111110 001111222345899999999999987779999999
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
|.+++|||.++.+....|+ ..+.|.+-+|+|-.. .++++|..+-.|++.|+.++.....+.+|...|.+|.|+|...
T Consensus 123 DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCce
Confidence 9999999999999888887 577899999988542 5778888899999999999999988899999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCCC------CCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSD------PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
..+++|+.||.|++||+|..... .+....+.+..-.+|.+.|.+++|+.++ .++++++.|..+++|+..+++
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCc
Confidence 99999999999999999976321 1111123334466899999999999998 999999999999999998875
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=201.76 Aligned_cols=286 Identities=17% Similarity=0.319 Sum_probs=215.9
Q ss_pred ccccc-CCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769 144 DMTIN-PNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 222 (502)
Q Consensus 144 ~~~~~-p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~ 222 (502)
.++.+ |.+++|.+|+.++ +|++|...........-| +..+-....|+. ++..-.+|+.|++++.|-+|+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg---~i~~W~~~~d~~~~s~~~------~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDG---IIRLWSVTQDSNEPSTPY------IASMEHHSDWVN-DIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccCCCCceEEecCCCc---eEEEeccccccCCcccch------hhhhhhhHhHHh-hHHhhcCCCceEEecCCceEE
Confidence 45555 5577899999887 678887765544211111 111111223421 111124688999999999999
Q ss_pred EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-cCCCCcEEEEEecCCcEEEEECCCC--
Q 010769 223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-NKEFRNILASASADKQVKIWDVAAG-- 299 (502)
Q Consensus 223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~~l~sgs~Dg~v~vwd~~~~-- 299 (502)
+|+..... ......+..|.+-|.||+. -++ ..++|||+-|+.|+|||++++
T Consensus 99 ~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 99 VWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred EeecccCc-------------------------chhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcch
Confidence 99987532 1122345579999999999 555 679999999999999999987
Q ss_pred eeeEE--------ec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE
Q 010769 300 KCNLT--------LE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 300 ~~~~~--------~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 370 (502)
+.+.+ +. ++...|.+++.++.+ ..|++|+..+.+++||.++.+.+..+.+|...|.++..+++|. .+++
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-~~ls 230 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-RLLS 230 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-eEee
Confidence 22322 22 788899999999999 8999999999999999999998887889999999999999876 7999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCC
Q 010769 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKA 449 (502)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~ 449 (502)
++.||+|++||++.. +++.++..|...|.++..+|.- ..+++|+.||.|..=|+++... ..++. ..
T Consensus 231 ~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick---~d 297 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICK---ED 297 (735)
T ss_pred cCCCceEEeeecccc---------ceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeec---CC
Confidence 999999999999986 8899999999999999999987 8999999999999999998532 22222 23
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 450 ~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
.+|..+..+..... +-+++.|+.|+-|-..-
T Consensus 298 aPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 298 APVLKLHLHEHDNS-VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CchhhhhhccccCC-ceeeeccccceecCCcc
Confidence 45666666643332 34567788888887654
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-23 Score=184.34 Aligned_cols=247 Identities=17% Similarity=0.272 Sum_probs=189.9
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
++.|.+||+|+.+|.|.|||+.+. .+...+.+|..+|++|+|+++| .+|+|+
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~---------------------------~iar~lsaH~~pi~sl~WS~dg-r~Llts 83 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTF---------------------------RIARMLSAHVRPITSLCWSRDG-RKLLTS 83 (405)
T ss_pred ccCcceeeeeccCCcEEEEEcccc---------------------------chhhhhhccccceeEEEecCCC-CEeeee
Confidence 788999999999999999999862 3344566899999999999995 599999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe----ecCCeEEEEeC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----VAADVESLAWD 361 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~v~~~ 361 (502)
|.|..|++||+..|.+++.++ ..++|+.+.|+|...+.+++.-.+..-.+-++..+........ ......+..|.
T Consensus 84 S~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred cCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc
Confidence 999999999999999999997 6889999999998877777777666666666654332221111 11223344688
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC---
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--- 437 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~--- 437 (502)
+.|. ++++|+..|.+.+|+..+. +++..+.... ..|..+.++..| .+|++-+.|..|+.|+++.-
T Consensus 163 r~g~-yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 163 RRGK-YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred CCCC-EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhccc
Confidence 8765 8999999999999999987 6666666555 788999999988 89999999999999998731
Q ss_pred ----CeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 438 ----QPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 438 ----~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
.+.....+. .....=.+++|+.+|.|++|+...-..++||.-..|.+++-+.+..
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 111111111 1122345788999999977766666789999999999987666554
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.6e-25 Score=213.55 Aligned_cols=222 Identities=25% Similarity=0.422 Sum_probs=195.6
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
..++.+++|+.+-.+-+|.+....... .+.+|..+|.+|.|++. ..+|++|+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~---------------------------S~~~hespIeSl~f~~~-E~Llaags 89 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAIT---------------------------SLTGHESPIESLTFDTS-ERLLAAGS 89 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhh---------------------------eeeccCCcceeeecCcc-hhhhcccc
Confidence 458899999999999999886432221 35689999999999999 66999999
Q ss_pred cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 366 (502)
.+|+|++||+...+.++++.+|...+.++.|+|.+ .++++|+.|+.+++||++...+......|...+.++.|+|+|.
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr- 167 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR- 167 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc-
Confidence 99999999999999999999999999999999999 8889999999999999998888776777888899999999876
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
+++.|++|..+++||++.+ +....+..|.+.+.++.|+|.. .++++||.|++|++||+++.. .+....
T Consensus 168 ~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe--~I~s~~ 235 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE--VISSGK 235 (825)
T ss_pred eeeccCCcceeeeeccccc---------ccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE--EeeccC
Confidence 8999999999999999987 7788899999999999999987 899999999999999999876 555666
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769 447 PKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~llasg~~d 471 (502)
.....|.+.+|+|++. .+++|...
T Consensus 236 ~~~~~v~~~~fn~~~~-~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGK-IVLSGEQI 259 (825)
T ss_pred CccCCceeeeecCCce-eeecCchh
Confidence 6678899999999998 46665544
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-23 Score=192.64 Aligned_cols=281 Identities=20% Similarity=0.280 Sum_probs=205.9
Q ss_pred eEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec--CCCcEEEeeCCCCC
Q 010769 153 VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS--MEPAIEIWDLDVID 230 (502)
Q Consensus 153 ~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~--~dg~I~iwdl~~~~ 230 (502)
+.++.+.+ .+++|.+..... ..-|+||.... + ...+.| +. .++|++++ .|..|++|.-+...
T Consensus 5 l~~aS~gd----~~kl~D~s~~~~--~~~~~~~t~~p-g-~~s~~w-------~~-~n~lvvas~~gdk~~~~~~K~g~~ 68 (673)
T KOG4378|consen 5 LHVASTGD----KTKLSDFSDLET--KSEYVHQTAEP-G-DFSFNW-------QR-RNFLVVASMAGDKVMRIKEKDGKT 68 (673)
T ss_pred eeeeccCC----ceEEeecccccC--ccccccCCCCC-c-ceeeec-------cc-cceEEEeecCCceeEEEecccCCC
Confidence 44444444 368888776554 14456665442 2 456667 22 34455554 56789999754321
Q ss_pred CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCC
Q 010769 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTD 310 (502)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~ 310 (502)
..-| . .....+ +.-.|++.... ..++++|+..++|+|||++...+.+.++.|..
T Consensus 69 ~~Vp--~---------------------~~k~~g--d~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s 122 (673)
T KOG4378|consen 69 PEVP--R---------------------VRKLTG--DNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQS 122 (673)
T ss_pred Cccc--e---------------------eecccc--chHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcc
Confidence 1111 1 111112 23445554444 45899999999999999998778888899999
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 010769 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 389 (502)
.|+++.++... .+|++++..|-|.|..+.++.....+... ...|.-+.|+|....+|.+++.+|.|.+||+...
T Consensus 123 tvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~---- 197 (673)
T KOG4378|consen 123 TVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM---- 197 (673)
T ss_pred eeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----
Confidence 99999999888 89999999999999999887765533332 3446689999998888999999999999999876
Q ss_pred CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769 390 DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 390 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~ 469 (502)
.........|..+...|+|+|..+.+|++.+.|+.|.+||++..+...... ...+..+++|.++|.+ |++|.
T Consensus 198 ----sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~-L~aG~ 269 (673)
T KOG4378|consen 198 ----SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTY-LCAGN 269 (673)
T ss_pred ----CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceE-EEeec
Confidence 233444578999999999999999999999999999999999766322222 2357899999999985 89999
Q ss_pred CCCcEEEEECCCCcccccc
Q 010769 470 SKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 470 ~dg~i~vwd~~~~~~~~~~ 488 (502)
..|.|..||++..+.....
T Consensus 270 s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred CCceEEEEecccCCCCceE
Confidence 9999999999887654333
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=4.8e-23 Score=189.97 Aligned_cols=266 Identities=17% Similarity=0.239 Sum_probs=202.9
Q ss_pred CCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee
Q 010769 191 AFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL 270 (502)
Q Consensus 191 ~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 270 (502)
...+|++|+++ .+-+++|+|...|.|-+||+...+.. ......+..|..+|.
T Consensus 187 ~Rit~l~fHPt-----~~~~lva~GdK~G~VG~Wn~~~~~~d-----------------------~d~v~~f~~hs~~Vs 238 (498)
T KOG4328|consen 187 RRITSLAFHPT-----ENRKLVAVGDKGGQVGLWNFGTQEKD-----------------------KDGVYLFTPHSGPVS 238 (498)
T ss_pred cceEEEEeccc-----CcceEEEEccCCCcEEEEecCCCCCc-----------------------cCceEEeccCCcccc
Confidence 34478888643 24579999999999999999633222 233345568999999
Q ss_pred eEEecCCCCcEEEEEecCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-
Q 010769 271 GLAWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF- 347 (502)
Q Consensus 271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~- 347 (502)
+|.|+|.....+++.|.||+|++-|++.+.. +.++......+.++.|+... ..++.+..=|...+||+|+......
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYEN 317 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchh
Confidence 9999999888999999999999999987643 33333345677888898887 5566666666999999999876433
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
..-|...|.+|+++|..+.++++++.|++++|||+|...... .++.....|...|.+..|||.+.. |+|.+.|.
T Consensus 318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~ 391 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDN 391 (498)
T ss_pred hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccCC
Confidence 335667999999999999999999999999999999864311 135666789999999999999844 99999999
Q ss_pred cEEEEECC----CCCeeEEEEecCCC---CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 428 MVKLWDLS----NNQPSCIASRNPKA---GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 428 ~i~vwd~~----~~~~~~~~~~~~~~---~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
.|+|||.. ...+.+........ -......|.|+.. ++++|..-..|-|+|-..++.+..+....
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 99999984 33333333322211 1356788999988 68899988899999999888776654443
No 129
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=196.49 Aligned_cols=307 Identities=15% Similarity=0.184 Sum_probs=223.6
Q ss_pred cccCCCceEEEEEecCCcceeEEEEEecCCCCC-Cceee--------------ee---ccccCCCcceeeeecCCCCCCC
Q 010769 146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGD-PNLYV--------------HH---HIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~--------------~~---~~~~~~~~~~~~w~~~~~~~s~ 207 (502)
++.-+.++|++|+.++ -|..|+.....- ..|-. .| .....-||-|++. .|.+
T Consensus 265 CIcVs~r~I~cgCa~g-----~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~-----~Fde 334 (1080)
T KOG1408|consen 265 CICVSSRLIACGCAKG-----MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIAC-----QFDE 334 (1080)
T ss_pred eeeeecceEEEeeccc-----eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEE-----EecC
Confidence 4445778999999998 444444332200 00000 00 0111234555543 3577
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC----------
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---------- 277 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---------- 277 (502)
....|.+...|..|+|||+.....+ ...+.+..|...|+++.--|-
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kv------------------------gk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl 390 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKV------------------------GKCSSMLYHSACIWDVENLPCNVHSPTAACL 390 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccc------------------------cceeeeeeccceeeeeccccccccCcccccC
Confidence 8888999999999999999754332 222344468888888876551
Q ss_pred CCcEEEEEecCCcEEEEECCCCe---eeE----------------------------------EeccCCCCeEEEEEcCC
Q 010769 278 FRNILASASADKQVKIWDVAAGK---CNL----------------------------------TLEHHTDKVQAVAWNHH 320 (502)
Q Consensus 278 ~~~~l~sgs~Dg~v~vwd~~~~~---~~~----------------------------------~~~~h~~~v~~l~~~~~ 320 (502)
-+..+++||.|++|++|++..+. ..+ ..-...-.+.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 12368999999999999987531 100 00012346899999999
Q ss_pred CCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC--CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769 321 SPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH--AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398 (502)
Q Consensus 321 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 398 (502)
+ +.|++|..-|++++|++...........|.+.|.|+.|+.- +..+|++++.|..|++||+... ..++.
T Consensus 471 g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--------y~l~q 541 (1080)
T KOG1408|consen 471 G-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--------YDLVQ 541 (1080)
T ss_pred c-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--------cchhh
Confidence 9 99999999999999999988888878899999999999752 3458899999999999999876 35666
Q ss_pred EEecCCCCeeEEEEcCCC------------------------------------------------CCEEEEEeCCCcEE
Q 010769 399 TLHAHDKAVCTISYNPLV------------------------------------------------PNLLATGSTDKMVK 430 (502)
Q Consensus 399 ~~~~h~~~v~~l~~sp~~------------------------------------------------~~~l~t~s~dg~i~ 430 (502)
++.+|...|+++.|...| .+++++++.|..|+
T Consensus 542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 666677666666653322 16899999999999
Q ss_pred EEECCCCCeeEEEE-ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010769 431 LWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 496 (502)
Q Consensus 431 vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 496 (502)
||++.+++....+. -..|.|....+...|.|-| ||++..|.++.++|+.+++++.+.++|.....
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVAQMTGHSEAVT 687 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence 99999988433322 2456788999999999997 89999999999999999999999999976543
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=197.26 Aligned_cols=296 Identities=17% Similarity=0.271 Sum_probs=219.2
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEec
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~-~la~g~ 216 (502)
+...|+++.-+|--..+|.|..+| +|.+++...+.. .+...|+ -+..+.+.+ ..||+ .||+|+
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G-----~ViifNlK~dki-l~sFk~d---~g~VtslSF-------rtDG~p~las~~ 264 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENG-----TVIIFNLKFDKI-LMSFKQD---WGRVTSLSF-------RTDGNPLLASGR 264 (910)
T ss_pred cccceeEeccCCcceEEEEeccCc-----eEEEEEcccCcE-EEEEEcc---ccceeEEEe-------ccCCCeeEEecc
Confidence 457899999999999999999998 666666555411 1112222 122244443 55665 567777
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
..|.+.+||++.. +........|.+.|..+.|.|. ..+|++++.|+.+++|=.
T Consensus 265 ~~G~m~~wDLe~k--------------------------kl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 265 SNGDMAFWDLEKK--------------------------KLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVF 317 (910)
T ss_pred CCceEEEEEcCCC--------------------------eeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEe
Confidence 7899999999731 2222233478899999999998 779999999999999866
Q ss_pred CCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-------------------------------
Q 010769 297 AAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI------------------------------- 341 (502)
Q Consensus 297 ~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~------------------------------- 341 (502)
.++ +.++.-.+|+.+..|+.|.-....++++++.|++++.+++..
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 544 455666799999999999855558888998888777766431
Q ss_pred ----------------------------------CCCccceEeec------CCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769 342 ----------------------------------STHSGFKWAVA------ADVESLAWDPHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 342 ----------------------------------~~~~~~~~~~~------~~v~~v~~~p~~~~~l~~~~~dg~i~i~d 381 (502)
...-.....+. ..+++++.++-| ++.+.|+..|.|-+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEE
Confidence 11100011111 346778888755 4899999999999999
Q ss_pred CCCCCCCCCCCCCCccEEE---ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-------------------
Q 010769 382 IRTAKSDPDSTSQQSSFTL---HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP------------------- 439 (502)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~------------------- 439 (502)
++++ ....++ ..|.++|++++....+ +.+++++.+|.+++||+....+
T Consensus 477 mQSG---------i~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 477 MQSG---------IHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred cccC---------eeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 9987 333344 6899999999999877 8999999999999999876431
Q ss_pred --------------------eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 440 --------------------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 440 --------------------~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
..+..+.+|...|+.++|||||++ |++++.|++|++||+.++.++--+
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCcceeeeE
Confidence 023344579999999999999997 888999999999999999987543
No 131
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=1.6e-22 Score=176.40 Aligned_cols=300 Identities=22% Similarity=0.329 Sum_probs=217.6
Q ss_pred cccccccc--CC-CceEEEEEecCC-cceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 141 DLEDMTIN--PN-DAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 141 ~v~~~~~~--p~-~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
...++.|+ |+ .-.||.|+...+ ...++|-.++.... .+........+..++.+.|++-..+.. ..+||+.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~---e~~~~a~fd~~YP~tK~~wiPd~~g~~--pdlLATs~ 120 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG---ELVEDANFDHPYPVTKLMWIPDSKGVY--PDLLATSS 120 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC---ceeccCCCCCCCCccceEecCCccccC--cchhhccc
Confidence 35666666 33 457777775443 23556666665444 444333345666778888975432222 36777765
Q ss_pred CCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 217 MEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 217 ~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
..+|+|.+...+ .+.+...|. ...-..+..++++..|+.-..++|.++|-|-+..|||
T Consensus 121 --D~LRlWri~~ee~~~~~~~~L~-------------------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWd 179 (364)
T KOG0290|consen 121 --DFLRLWRIGDEESRVELQSVLN-------------------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWD 179 (364)
T ss_pred --CeEEEEeccCcCCceehhhhhc-------------------cCcccccCCcccccccccCCcceeEeecccCeEEEEE
Confidence 589999986422 122211111 0112246789999999988888999999999999999
Q ss_pred CCCCe---eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee---cCCeEEEEeCCCCCCEEE
Q 010769 296 VAAGK---CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV---AADVESLAWDPHAEHSFV 369 (502)
Q Consensus 296 ~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~l~ 369 (502)
++++. ....+-.|...|..++|...+..+|++.+.||.|++||+|........... ..+...++|++..+++++
T Consensus 180 ie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymA 259 (364)
T KOG0290|consen 180 IETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMA 259 (364)
T ss_pred EeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHh
Confidence 99873 355677899999999999988889999999999999999988776655533 456889999999988888
Q ss_pred EEeC-CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----eEEEE
Q 010769 370 VSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----SCIAS 444 (502)
Q Consensus 370 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----~~~~~ 444 (502)
+-.. ...|.+.|+|.. ..++..+..|.+.|++++|.|..+..|+|++.|..+.+||+..... ..+..
T Consensus 260 Tf~~dS~~V~iLDiR~P--------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVP--------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred hhhcCCceEEEEEecCC--------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 7554 457999999988 5889999999999999999999989999999999999999976431 11222
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~v 476 (502)
.. ..+.|+.++|++..+--++.+..+ .+.+
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 22 346799999997665457766543 4443
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.2e-25 Score=211.47 Aligned_cols=212 Identities=23% Similarity=0.352 Sum_probs=192.2
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 343 (502)
.|...|.|+..-.. ...+++|+.|..+-+|.+....++..|.+|..+|.+|.|++.. .+|++|+.+|+|++||+...+
T Consensus 26 ~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh
Confidence 68899999988444 5689999999999999999888888999999999999999998 899999999999999999988
Q ss_pred CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769 344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
....+.+|...+.+|.|+|.+. +++.|+.|+.+.+||++.. .+.+.+.+|...|.++.|+|+| ++++.|
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~---------Gc~~~~~s~~~vv~~l~lsP~G-r~v~~g 172 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK---------GCSHTYKSHTRVVDVLRLSPDG-RWVASG 172 (825)
T ss_pred hhhhhhccccCcceeeeccceE-Eeccccccccceehhhhcc---------CceeeecCCcceeEEEeecCCC-ceeecc
Confidence 8888889999999999999876 7799999999999999975 6888899999999999999998 999999
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+.|..++|||+..++ .+..+..|.+.+.++.|+|..- ++++||.|+++++||+.+-+.+.+.-..
T Consensus 173 ~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe~I~s~~~~ 237 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFEVISSGKPE 237 (825)
T ss_pred CCcceeeeecccccc--cccccccccccccccccCchhh-hhccCCCCceeeeeccceeEEeeccCCc
Confidence 999999999999988 6778889999999999999875 8999999999999999987766544333
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4e-22 Score=198.37 Aligned_cols=276 Identities=17% Similarity=0.249 Sum_probs=208.4
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
|...-+.++|.|+|..|++++.+++ +++|.-.... ..|.....+ ....+|+ ...+++|++|+.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~---ir~~~~~sd~-e~P~ti~~~----g~~v~~i---------a~~s~~f~~~s~ 74 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGD---IRKWKTNSDE-EEPETIDIS----GELVSSI---------ACYSNHFLTGSE 74 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCc---eEEeecCCcc-cCCchhhcc----CceeEEE---------eecccceEEeec
Confidence 6677889999999999999999983 3555443332 122222211 1111333 235779999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
+++|.+|.+..++.-. .+...+-++.+++++.+ +.++|.||.|-.|++-++.
T Consensus 75 ~~tv~~y~fps~~~~~---------------------------iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDT---------------------------ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred cceEEEeeCCCCCccc---------------------------eeeeeeccceEEEEecC-CcEEEeecCceeEEEEecc
Confidence 9999999997644321 12235678999999998 6799999999999999999
Q ss_pred CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--------ecCCeEEEEeCCCCCCEEE
Q 010769 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~ 369 (502)
.......+++|.++|.+|.|+|.+ .+|++.+.||.|++|++..+........ ....+..++|+|++. .|+
T Consensus 127 D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la 204 (933)
T KOG1274|consen 127 DSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLA 204 (933)
T ss_pred ccchheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEE
Confidence 999999999999999999999999 9999999999999999998765432221 134577899999977 577
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCCCccEEE--ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC
Q 010769 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP 447 (502)
Q Consensus 370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~ 447 (502)
+-..++.|++|+.... ...+.+ ..+...++.++|+|+| .|||+++.+|.|.|||..+.. ...
T Consensus 205 ~~~~d~~Vkvy~r~~w---------e~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~------~~~ 268 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGW---------ELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE------RHE 268 (933)
T ss_pred eeccCCeEEEEccCCc---------eeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccch------hcc
Confidence 7778999999999886 444444 3345559999999998 999999999999999998733 123
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~llasg~~dg~i~vw 477 (502)
....|.+++|.|+.+- +..-...|+..+|
T Consensus 269 ~~~~Vc~~aw~p~~n~-it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNANA-ITLITALGTLGVS 297 (933)
T ss_pred ccceeEEEecCCCCCe-eEEEeeccccccC
Confidence 3467999999999873 5444444544443
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.7e-21 Score=181.69 Aligned_cols=284 Identities=20% Similarity=0.334 Sum_probs=211.4
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCC-CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG-GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
.+.|....|+|.+.-|++.+..+ ++..|.+..... +...++..++ ..+.+|+.+ .++|. +++|..
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~---H~~Fw~~~~~~l~k~~~~fek~e---kk~Vl~v~F-------~engd-viTgDS 265 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKG---HLYFWTLRGGSLVKRQGIFEKRE---KKFVLCVTF-------LENGD-VITGDS 265 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCc---eEEEEEccCCceEEEeecccccc---ceEEEEEEE-------cCCCC-EEeecC
Confidence 45678999999998777777665 455554332221 0011122222 266788887 45564 789999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
+|.|.||+.... +.......|.+.|.+|....+ + .|+||+.|..|..||-.
T Consensus 266 ~G~i~Iw~~~~~---------------------------~~~k~~~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 266 GGNILIWSKGTN---------------------------RISKQVHAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWDDN 316 (626)
T ss_pred CceEEEEeCCCc---------------------------eEEeEeeecCCceEEEEEecC-c-cEeecCccceEEecccc
Confidence 999999997531 122222379999999999998 4 57789999999999832
Q ss_pred CCe----------------------------------------eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769 298 AGK----------------------------------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 298 ~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 337 (502)
-.+ ......+|......++.+|.. .++++++.|+.+++|
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLW 395 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEc
Confidence 000 001224688889999999998 889999999999999
Q ss_pred eCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769 338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
+ ...+........++.|+.|+|.+ .+++|+..|...+.|..+. .+.+++....++++++|+|+|
T Consensus 396 ~---~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~d~~~ls~v~ysp~G- 459 (626)
T KOG2106|consen 396 N---DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQ----------DLVTIHTDNEQLSVVRYSPDG- 459 (626)
T ss_pred c---CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccc----------eeEEEEecCCceEEEEEcCCC-
Confidence 9 33344455677889999999976 7999999999999999874 344444458999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
.+||.|+.|+.|+||-+..+..........+..+|+.+.|++|++| |.+-+.|-.|..|.....+
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKPSECK 524 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce-EEeccCceEEEEEccccCc
Confidence 9999999999999999987665444444555589999999999997 7788888899999544433
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.8e-22 Score=175.99 Aligned_cols=261 Identities=14% Similarity=0.243 Sum_probs=188.2
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|...+++++.+ +.++|+|+.+. .|++|+-..........+|... ..|+.+..+ ...+.|++|
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDe-----tI~IYDm~k~~qlg~ll~Hags----itaL~F~~~-----~S~shLlS~ 103 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDE-----TIHIYDMRKRKQLGILLSHAGS----ITALKFYPP-----LSKSHLLSG 103 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCC-----cEEEEeccchhhhcceeccccc----eEEEEecCC-----cchhheeee
Confidence 4588889888874 89999999998 5555554433222333344322 256665321 123489999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.||.|.+|+... ......+.+|...|+.|+.+|. +.+.++.+.|+.+++||
T Consensus 104 sdDG~i~iw~~~~---------------------------W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 104 SDDGHIIIWRVGS---------------------------WELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWN 155 (362)
T ss_pred cCCCcEEEEEcCC---------------------------eEEeeeecccccccceeEecCC-CceEEEEcCCceeeeeh
Confidence 9999999999864 3444466789999999999999 56888999999999999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG 375 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg 375 (502)
+-+|+....+.- ....+.+.|+|.| .+|+.++.+ .|-+|.+....... ....+..+.|+.|.. ...+++|+.++
T Consensus 156 LV~Gr~a~v~~L-~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~-~i~~~~r~l~~~~l~--~~~L~vG~d~~ 229 (362)
T KOG0294|consen 156 LVRGRVAFVLNL-KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFR-EIENPKRILCATFLD--GSELLVGGDNE 229 (362)
T ss_pred hhcCccceeecc-CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhh-hhhccccceeeeecC--CceEEEecCCc
Confidence 999987655542 2334459999999 656666554 58899887655433 223335577777765 34799999999
Q ss_pred eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc--CCCCCEEEEEeCCCcEEEEECCCCC---eeEEEEecCCCC
Q 010769 376 TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLSNNQ---PSCIASRNPKAG 450 (502)
Q Consensus 376 ~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~~l~t~s~dg~i~vwd~~~~~---~~~~~~~~~~~~ 450 (502)
.|.+||.... .+...+.+|...|-.+.+- |.+ .+|+|+|.||.|+|||+.... +..+..... ..
T Consensus 230 ~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~ 298 (362)
T KOG0294|consen 230 WISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NV 298 (362)
T ss_pred eEEEeccCCC---------ccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccccCCcceeEEeec-CC
Confidence 9999999875 7889999999999999843 444 799999999999999998762 223333332 34
Q ss_pred CEEEEEE
Q 010769 451 AVFSVAF 457 (502)
Q Consensus 451 ~v~~~~~ 457 (502)
.++|+..
T Consensus 299 RltCl~~ 305 (362)
T KOG0294|consen 299 RLTCLRV 305 (362)
T ss_pred ccceeee
Confidence 5555554
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-22 Score=171.94 Aligned_cols=256 Identities=19% Similarity=0.270 Sum_probs=194.4
Q ss_pred CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeeeccccCCCcceeeeecCCCCCCC-CCCE
Q 010769 135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE-KGNF 211 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~-~~~~ 211 (502)
+..|++.|-+++..--|+.||++++++ +++|+....... ....|.+|. +....+.|. +| -|++
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~---tVkIf~v~~n~~s~ll~~L~Gh~-----GPVwqv~wa------hPk~G~i 72 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDG---TVKIFEVRNNGQSKLLAELTGHS-----GPVWKVAWA------HPKFGTI 72 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCc---cEEEEEEcCCCCceeeeEecCCC-----CCeeEEeec------ccccCcE
Confidence 456899999999999999999999998 556665554432 112233333 333788886 44 3999
Q ss_pred EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecCCc
Q 010769 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASADKQ 290 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~ 290 (502)
||++++||.|.||.-..+ .....+....|...|++++|-|.. +.+|++++.||.
T Consensus 73 LAScsYDgkVIiWke~~g-------------------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~ 127 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-------------------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK 127 (299)
T ss_pred eeEeecCceEEEEecCCC-------------------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCc
Confidence 999999999999997643 133444566899999999999873 458999999999
Q ss_pred EEEEECCCC---eeeEEeccCCCCeEEEEEcCC---C----------CcEEEEEECCCcEEEEeCCCCCC--ccceEeec
Q 010769 291 VKIWDVAAG---KCNLTLEHHTDKVQAVAWNHH---S----------PQILLSGSFDRSVVMKDARISTH--SGFKWAVA 352 (502)
Q Consensus 291 v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~----------~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~ 352 (502)
|.|.+++.. ........|.-.|++++|.|. | .+.|++|+.|..|+||+.....- ...+..|.
T Consensus 128 vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~ 207 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK 207 (299)
T ss_pred EEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc
Confidence 999988754 223445789999999999986 2 14699999999999999987532 22356788
Q ss_pred CCeEEEEeCCCC---CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769 353 ADVESLAWDPHA---EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 353 ~~v~~v~~~p~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
..|+.++|.|.- ...+++++.||+|.||..+..... -....+......+.+++|++.| ++|+.++.|+.|
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkv 280 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKV 280 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCcceEEEEEeccc-cEEEEecCCcEE
Confidence 999999999963 347999999999999998843211 1122233456789999999998 999999999999
Q ss_pred EEEECCC
Q 010769 430 KLWDLSN 436 (502)
Q Consensus 430 ~vwd~~~ 436 (502)
.+|.-..
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9997544
No 137
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=9.6e-23 Score=196.85 Aligned_cols=225 Identities=18% Similarity=0.248 Sum_probs=189.9
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee-EEecCCCCcEEEEEe
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs 286 (502)
++..+++++.||++++|+-.. +.....+.+.+|.+-|.+ +++-+..+-.|++|+
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~-------------------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKG-------------------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred CCeEEeecCCCCceeeeeccC-------------------------cccccceecccCcceeeccceeccccCcceEeec
Confidence 466899999999999998532 222233445567777777 888764344799999
Q ss_pred cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC
Q 010769 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 366 (502)
.|++|.+|.+.+..+..++++|...|+|++...++ . +++|+.|.++++|-.... .....+|...|.++..-|.+
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhh--hcccCCcchheeeeeecCCC--
Confidence 99999999999999999999999999999988877 3 999999999999987543 33367899999999999865
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.+++|+.|.+|++|.-. ..+.++.+|...|+++++-+. ..+++|+.||.|++|++ ++. ++....
T Consensus 153 ~~vTgsaDKtIklWk~~-----------~~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~-~ge--~l~~~~ 216 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGG-----------TLLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDL-DGE--VLLEMH 216 (745)
T ss_pred cEEeccCcceeeeccCC-----------chhhhhccchhheeeeEEecC--CCeEeecCCceEEEEec-cCc--eeeeee
Confidence 79999999999999764 668889999999999999995 46999999999999999 444 688899
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
+|...|++++..+++. +++++|.|++++||+..
T Consensus 217 ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 9999999999766666 69999999999999986
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-22 Score=185.03 Aligned_cols=268 Identities=17% Similarity=0.215 Sum_probs=206.5
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 220 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~ 220 (502)
.+.++.|+.... |++++..++ ..+.+|.-+...+ .+-....... .-..|+... ....|+++|+..+.
T Consensus 36 g~~s~~w~~~n~-lvvas~~gd-k~~~~~~K~g~~~---~Vp~~~k~~g-d~~~Cv~~~-------s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGD-KVMRIKEKDGKTP---EVPRVRKLTG-DNAFCVACA-------SQSLYEISGGQSGC 102 (673)
T ss_pred cceeeeccccce-EEEeecCCc-eeEEEecccCCCC---ccceeecccc-chHHHHhhh-------hcceeeeccCcCce
Confidence 388899998877 556665554 2344444333322 2211111111 122566543 34689999999999
Q ss_pred EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~ 300 (502)
|+|||+.. +.....+.+|++.|+++.++.. ..+||+++..|.|.|..+.++.
T Consensus 103 Vkiwdl~~---------------------------kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 103 VKIWDLRA---------------------------KLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred eeehhhHH---------------------------HHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCc
Confidence 99999962 3444567799999999999988 4599999999999999999998
Q ss_pred eeEEeccCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-eEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769 301 CNLTLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 301 ~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 378 (502)
....|...+ ..|.-+.|+|....+|.+++.+|.|.+||+........ ...|..+...++|+|.++.+|++.+.|..|.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence 888887553 45568999999878889999999999999987765442 3468889999999999999999999999999
Q ss_pred EEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769 379 GFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 379 i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
+||++.. .....+ ....+.+.++|+++| .+|++|+..|.|..||++..+ ..+..+..|...|++++|-
T Consensus 235 ~yD~~s~---------~s~~~l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 235 IYDIRSQ---------ASTDRL-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred Eeecccc---------ccccee-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEee
Confidence 9999964 333333 356789999999998 999999999999999999765 4677888899999999998
Q ss_pred CCC
Q 010769 459 EDS 461 (502)
Q Consensus 459 pd~ 461 (502)
|.-
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 764
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.5e-22 Score=173.88 Aligned_cols=304 Identities=11% Similarity=0.147 Sum_probs=206.1
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE-EEE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF-MAV 214 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~-la~ 214 (502)
..|..+|++++|+.+|+.||+++.++ .++||..+.-.. ..|..+....++. .+..+.|+|+-+- ++.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr---~Ir~w~~~DF~~------~eHr~~R~nve~d---hpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDR---SIRLWDVRDFEN------KEHRCIRQNVEYD---HPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCc---eEEEEecchhhh------hhhhHhhccccCC---CceEEEECCCcceEEEE
Confidence 46899999999999999999999887 677777765332 2222222222111 1122334788554 444
Q ss_pred ecCCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 215 GSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
.-...++++|.+.... ...++... ..-.......|.-.|..+-...+ ..+|+|++.|..|.|
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v----------------~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFV----------------HIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICL 213 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccc----------------cccccccchhcccceEEEeecCC-ceEEEEecCCCcEEE
Confidence 4555689999885321 11111000 01111122346666767766655 679999999999999
Q ss_pred EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC--------CccceEeecCCeEEEEeCCCCC
Q 010769 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST--------HSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
|++. |+.+.++......-+..+.+|+| +++++++.---|++|.+--.+ ....+.+|.+.|..++|++++.
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 9998 99999887777778889999999 999999999999999863211 1223457899999999999865
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE----EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF----TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
.+++.+.||.+++||+.-....... .+.+. .+..-.+.-..++++|.| ..||.+. ...+++|..++++...
T Consensus 292 -r~vtvSkDG~wriwdtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~s~-gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 292 -RAVTVSKDGKWRIWDTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSG-DSLAVSF-GSDLKVFASEDGKDYP 366 (420)
T ss_pred -eeEEEecCCcEEEeeccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCC-cEEEeec-CCceEEEEcccCccch
Confidence 7999999999999998654221111 11111 122233444589999988 6555543 4569999998876322
Q ss_pred EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
.--..|.+.|.+++|+++|+| ++++| |..+++..
T Consensus 367 -~~e~~h~~~Is~is~~~~g~~-~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 367 -ELEDIHSTTISSISYSSDGKY-IATCG-DRYVRVIR 400 (420)
T ss_pred -hHHHhhcCceeeEEecCCCcE-Eeeec-ceeeeeec
Confidence 223468899999999999996 77766 55777776
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.5e-22 Score=196.44 Aligned_cols=241 Identities=17% Similarity=0.256 Sum_probs=193.7
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.|+|.+|++++.||.|++|+...... .|.. ...|...|.+++... ++|++|
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd~e-~P~t-------------------------i~~~g~~v~~ia~~s---~~f~~~ 72 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSDEE-EPET-------------------------IDISGELVSSIACYS---NHFLTG 72 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCccc-CCch-------------------------hhccCceeEEEeecc---cceEEe
Confidence 68999999999999999999764321 1111 112677888888754 489999
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
+.+++|.+|.+..+..-..+...+-++.+++|+.+| .+++.|+.|-.|++.++..........+|.++|.++.|+|.+.
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence 999999999999887665666667899999999999 8999999999999999998888888889999999999999865
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 366 HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
++++++.||.|++|++..+....... ........ ....++.++|+|++ ..++..+.|+.|++|+.....+.....
T Consensus 152 -fLAvss~dG~v~iw~~~~~~~~~tl~--~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 152 -FLAVSSCDGKVQIWDLQDGILSKTLT--GVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred -EEEEEecCceEEEEEcccchhhhhcc--cCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeec
Confidence 89999999999999999873211110 00001111 14567889999998 667777789999999999988655555
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
...+...+..++|+|.|.| ||+++.+|.|.|||+.+
T Consensus 228 ~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 5666666999999999997 99999999999999986
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.2e-21 Score=173.84 Aligned_cols=305 Identities=17% Similarity=0.254 Sum_probs=210.0
Q ss_pred CCCCccccccccccCC----C-ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCC
Q 010769 135 DDEDSEDLEDMTINPN----D-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKG 209 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~----~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~ 209 (502)
.++|...|..++|.+- . ..+|+++.. .+.+|.+..... ...|....+...+.-.+.++|..- . ....
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~----rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd-~--~~~~ 105 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN----RVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYD-S--NTGN 105 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc----EEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEec-C--CCCC
Confidence 3567788988888842 2 233333322 466666655441 123333333323333355677421 1 1236
Q ss_pred CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769 210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 289 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg 289 (502)
.+||+|+.-|.|+|.|+.+.. ....+.+|..+|+.|.++|...++|++||.|.
T Consensus 106 p~la~~G~~GvIrVid~~~~~---------------------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQ---------------------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred eeEEeecceeEEEEEecchhh---------------------------hccceeccCccchhhhcCCCCCcEEEEecCCc
Confidence 689999999999999997533 33356689999999999999889999999999
Q ss_pred cEEEEECCCCeeeEEe---ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--------------------
Q 010769 290 QVKIWDVAAGKCNLTL---EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-------------------- 346 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------------- 346 (502)
+|++|++++..|+..| .+|.+.|.++.|++++ .+|++++.|.+|.+|++..++...
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 9999999999999988 5799999999999999 799999999999999998432110
Q ss_pred --------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC-CCC----CCCCccEEEecCCCCeeEE--E
Q 010769 347 --------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS----TSQQSSFTLHAHDKAVCTI--S 411 (502)
Q Consensus 347 --------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~----~~~~~~~~~~~h~~~v~~l--~ 411 (502)
....|...|-|+.|-- .++++-+-++.|..|-....... .+. .....+..+.-....|.-+ +
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred ccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 0112445566677753 37788788889999987322111 000 0011223333334444444 5
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe--cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR--NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
|.|.+ .+||.|...|.|.+||++...+....++ ......|...+|+.|+. +|+....+++|.-||..
T Consensus 315 ~d~~~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 315 FDPWQ-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ecHHH-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 56666 8999999999999999998876332222 23345799999999999 46677889999999864
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.9e-22 Score=186.00 Aligned_cols=208 Identities=20% Similarity=0.306 Sum_probs=172.8
Q ss_pred CCcccceeeEEecCCCC-cEEEEEecCCcEEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769 263 GSHTDSVLGLAWNKEFR-NILASASADKQVKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~-~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 337 (502)
..|.++|++++|+|... +++|+|..-|+|-+||+.+. .-+..+..|+.+|.+|.|+|.+...+++.++||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 35889999999999855 79999999999999999533 23566788999999999999999999999999999999
Q ss_pred eCCCCCCccceEe--ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769 338 DARISTHSGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 338 d~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
|+........... ....+..+.|+.... .++.+..=|...+||+|+. ......+..|...|++++++|.
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~--------~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTD--------GSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecC--------CccchhhhhhhcccceeecCCC
Confidence 9987654332222 344566777877655 5667777779999999998 4557777889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeE--EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 416 VPNLLATGSTDKMVKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
.+.+|||+|.|++++|||++...... +.....|.-.|.++.|||.+.. |+|.+.|..|+|||..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 99999999999999999998754322 4556678899999999999985 8888999999999994
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=187.02 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=179.5
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
+.+.|+ |....|++++.|.+|++||+........ ..+.||...|.+++
T Consensus 104 fDl~wa-------pge~~lVsasGDsT~r~Wdvk~s~l~G~-------------------------~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 104 FDLKWA-------PGESLLVSASGDSTIRPWDVKTSRLVGG-------------------------RLNLGHTGSVKSEC 151 (720)
T ss_pred EeeccC-------CCceeEEEccCCceeeeeeeccceeecc-------------------------eeecccccccchhh
Confidence 566774 6677899999999999999976433221 13458999999999
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCe---------------------------eeEEeccCCCCeEE---EEEcCCCCc
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGK---------------------------CNLTLEHHTDKVQA---VAWNHHSPQ 323 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~---------------------------~~~~~~~h~~~v~~---l~~~~~~~~ 323 (502)
|.|.....|++|+.||.|.|||++... .+..-..+...|.+ +.+..++ .
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~ 230 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-S 230 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-c
Confidence 999999999999999999999986321 01112234445555 5555666 6
Q ss_pred EEEEEEC-CCcEEEEeCCCCCCccceE--------ee---cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC
Q 010769 324 ILLSGSF-DRSVVMKDARISTHSGFKW--------AV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS 391 (502)
Q Consensus 324 ~l~s~~~-dg~i~vwd~~~~~~~~~~~--------~~---~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 391 (502)
.|++++. |+.|+|||+|......... .+ .-.+.++.....|. ++++.+.|+.|++|+++....
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~---- 305 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSI---- 305 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCc----
Confidence 7888777 9999999999765432111 11 33577888888777 455555699999999998743
Q ss_pred CCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769 392 TSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 392 ~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~ 469 (502)
.++..+.++... -..-..+|++ .+|++|+.|...++|.+.+... ....+.+|.-.|++++|.|..--=+++++
T Consensus 306 ---sP~~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~eVt~V~w~pS~~t~v~TcS 380 (720)
T KOG0321|consen 306 ---SPVAEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTREVTTVRWLPSATTPVATCS 380 (720)
T ss_pred ---CchhhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccC-ChhhhhCcceEEEEEeeccccCCCceeec
Confidence 445555444321 1223467887 9999999999999999988763 45566789999999999886433377789
Q ss_pred CCCcEEEEECCCCc
Q 010769 470 SKGKLEIWDTLSDA 483 (502)
Q Consensus 470 ~dg~i~vwd~~~~~ 483 (502)
.|.+++||++..+-
T Consensus 381 dD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 381 DDFRVKIWRLSNGL 394 (720)
T ss_pred cCcceEEEeccCch
Confidence 99999999996544
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=187.32 Aligned_cols=255 Identities=20% Similarity=0.243 Sum_probs=182.4
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
.....||++..+|.|.++|.....-. -..+.......|..+|..+.|-| +...|++++
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr---------------------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsas 119 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFR---------------------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSAS 119 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcc---------------------hhhhhhcccccccceeEeeccCC-CceeEEEcc
Confidence 35788999999999999998632111 01222334567999999999999 588999999
Q ss_pred cCCcEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc------------------
Q 010769 287 ADKQVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------------------ 346 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------------ 346 (502)
.|.++++||+.+++++.. +.+|.+.|.+++|.|.++..|++|+.||.|.|||+|......
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 999999999999988776 889999999999999999999999999999999998433100
Q ss_pred ---------ceEeecCC----eEEEEeCCCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCCCCccEEEecC---CCCeeE
Q 010769 347 ---------FKWAVAAD----VESLAWDPHAEHSFVVSLE-DGTIKGFDIRTAKSDPDSTSQQSSFTLHAH---DKAVCT 409 (502)
Q Consensus 347 ---------~~~~~~~~----v~~v~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h---~~~v~~ 409 (502)
....+... |+.+.| .+.. .|++++. |+.|++||+|+........ ......+..| ...+++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~-tlaSaga~D~~iKVWDLRk~~~~~r~e-p~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-KDES-TLASAGAADSTIKVWDLRKNYTAYRQE-PRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-eccc-eeeeccCCCcceEEEeecccccccccC-CCcccCccCcccceeeeEE
Confidence 00011222 444444 4434 6776665 9999999999874322210 1222333334 346788
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCC--EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 410 ISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGA--VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 410 l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+.....|..++|+|. |++|++|++.......+..+.++... -..-..+|++.+ |++|+.|...++|.+.+-+.-..
T Consensus 277 L~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccCCCcceeeeeecCccCChh
Confidence 888888855555555 99999999998765455555444321 223346899997 88999999999999988765443
Q ss_pred c
Q 010769 488 R 488 (502)
Q Consensus 488 ~ 488 (502)
+
T Consensus 355 ~ 355 (720)
T KOG0321|consen 355 L 355 (720)
T ss_pred h
Confidence 3
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4e-21 Score=169.00 Aligned_cols=266 Identities=17% Similarity=0.305 Sum_probs=191.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCcee-----eeeccccCCCcceeeeecCCCCCCCC-C
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLY-----VHHHIIIPAFPLCMAWLDCPLKDREK-G 209 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~w~~~~~~~s~~-~ 209 (502)
..|.+-|.++.|.+-|+.+|+++.+. +++||.++...+ +.. .-|+.. ...+.|. +|. |
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq---~vkI~d~~~~s~---~W~~Ts~Wrah~~S----i~rV~WA------hPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQ---TVKIWDSTSDSG---TWSCTSSWRAHDGS----IWRVVWA------HPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCC---cEEEEeccCCCC---ceEEeeeEEecCCc----EEEEEec------Ccccc
Confidence 45888899999999999999999997 678888755444 322 223222 2678886 454 9
Q ss_pred CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEEEEecC
Q 010769 210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILASASAD 288 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~sgs~D 288 (502)
+.+|+++.|+++.||.-...+. ..+.+.......+......|+.+.|.|.. +-.||+++.|
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~------------------~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aD 135 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSE------------------EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASAD 135 (361)
T ss_pred ceEEEEecCCceeeeeeccccc------------------ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccC
Confidence 9999999999999998531100 01122344445566778899999999963 4589999999
Q ss_pred CcEEEEECCCC------eeeEEec-------cCCCCeEEEEEcCCC--CcEEEEEECC-----CcEEEEeCCCCC----C
Q 010769 289 KQVKIWDVAAG------KCNLTLE-------HHTDKVQAVAWNHHS--PQILLSGSFD-----RSVVMKDARIST----H 344 (502)
Q Consensus 289 g~v~vwd~~~~------~~~~~~~-------~h~~~v~~l~~~~~~--~~~l~s~~~d-----g~i~vwd~~~~~----~ 344 (502)
|+||||+.-.. ...+.++ .+..+..|+.|+|.. ..+|+.|+.+ +.+.||...... .
T Consensus 136 G~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k 215 (361)
T KOG2445|consen 136 GILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK 215 (361)
T ss_pred cEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee
Confidence 99999986532 3333333 466788999999753 2567777765 478888765443 2
Q ss_pred ccceEeecCCeEEEEeCCCCC---CEEEEEeCCCeEEEEECCCCCC--------C---CCCCCCCccEEEecCCCCeeEE
Q 010769 345 SGFKWAVAADVESLAWDPHAE---HSFVVSLEDGTIKGFDIRTAKS--------D---PDSTSQQSSFTLHAHDKAVCTI 410 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~--------~---~~~~~~~~~~~~~~h~~~v~~l 410 (502)
...+..+..+|+.++|.|.-+ +++++++.|| |+||.++.... . ........+..+..|.+.|..+
T Consensus 216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv 294 (361)
T KOG2445|consen 216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV 294 (361)
T ss_pred ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE
Confidence 233447889999999999633 4788999999 99999985321 0 0011123345567899999999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769 411 SYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
.|+-.| ..|++.|.||.||+|...-.
T Consensus 295 ~wNmtG-tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 295 RWNMTG-TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEeeee-eEEeecCCCceeeehhhhhh
Confidence 999988 99999999999999976543
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=182.41 Aligned_cols=284 Identities=19% Similarity=0.263 Sum_probs=223.4
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d 218 (502)
..+|.+|+|+...+.||++..++ .+++|.....--.++.++++.+..+ -.++| + .+..|.+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g---~IEiwN~~~~w~~~~vi~g~~drsI----E~L~W-------~-e~~RLFS~g~s 89 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDG---NIEIWNLSNNWFLEPVIHGPEDRSI----ESLAW-------A-EGGRLFSSGLS 89 (691)
T ss_pred ccceEEEEEeccCCceeeeccCC---cEEEEccCCCceeeEEEecCCCCce----eeEEE-------c-cCCeEEeecCC
Confidence 35799999999999999999998 7799988765544445555444444 46677 3 46677888889
Q ss_pred CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~ 298 (502)
|.|.-||+.+... ........++|++++.+|. ...++.|+.||.+..++...
T Consensus 90 g~i~EwDl~~lk~---------------------------~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 90 GSITEWDLHTLKQ---------------------------KYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred ceEEEEecccCce---------------------------eEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCC
Confidence 9999999976332 2334456789999999999 57999999999888888877
Q ss_pred CeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----e----ecCCeEEEEeCCCCCCEE
Q 010769 299 GKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----A----VAADVESLAWDPHAEHSF 368 (502)
Q Consensus 299 ~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~----~~~~v~~v~~~p~~~~~l 368 (502)
++... .|...++.|.+++|+|++ ..+++|+.||.|++||..++....... + ...-|.+|.|-.++ .+
T Consensus 142 ~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI 218 (691)
T KOG2048|consen 142 DKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TI 218 (691)
T ss_pred ceEEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cE
Confidence 76543 344456899999999999 789999999999999999877544111 1 12236777776543 79
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEEEec
Q 010769 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIASRN 446 (502)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~~~~ 446 (502)
++|...|+|.+||...+ ..+..+..|...|.+++..+++ .++++++.|+.|..|...++.. .....+.
T Consensus 219 ~sgDS~G~V~FWd~~~g---------TLiqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~ 288 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFG---------TLIQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRD 288 (691)
T ss_pred EEecCCceEEEEcccCc---------chhhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeecccc
Confidence 99999999999999987 7788889999999999999987 8999999999999998877642 2344556
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 447 PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
.|...|.+++..++ .+++||.|..+.+=-.+.
T Consensus 289 ~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 289 LHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred CCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 78888999999887 588999999888866554
No 147
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3.7e-20 Score=172.87 Aligned_cols=296 Identities=14% Similarity=0.229 Sum_probs=214.9
Q ss_pred CccccccccccCC--CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCC-CCEEEE
Q 010769 138 DSEDLEDMTINPN--DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREK-GNFMAV 214 (502)
Q Consensus 138 ~~~~v~~~~~~p~--~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~-~~~la~ 214 (502)
-+..|.+++|++. |.+| ++-.++....|.||.|..+.... ......+.+ +..+| +|. .+++++
T Consensus 153 f~~GV~~vaFsk~~~G~~l-~~vD~s~~h~lSVWdWqk~~~~~-~vk~sne~v-----~~a~F-------HPtd~nliit 218 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLL-CAVDDSNPHMLSVWDWQKKAKLG-PVKTSNEVV-----FLATF-------HPTDPNLIIT 218 (626)
T ss_pred ccccceeeeecccCCCceE-EEecCCCccccchhhchhhhccC-cceeccceE-----EEEEe-------ccCCCcEEEE
Confidence 3567999999986 3444 44444455688999998665311 111122222 33444 554 566666
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
.+ .|.+.+|++..........++.+ ....-|+|++|.+++. +++|..+|.|.||
T Consensus 219 ~G-k~H~~Fw~~~~~~l~k~~~~fek-----------------------~ekk~Vl~v~F~engd--viTgDS~G~i~Iw 272 (626)
T KOG2106|consen 219 CG-KGHLYFWTLRGGSLVKRQGIFEK-----------------------REKKFVLCVTFLENGD--VITGDSGGNILIW 272 (626)
T ss_pred eC-CceEEEEEccCCceEEEeecccc-----------------------ccceEEEEEEEcCCCC--EEeecCCceEEEE
Confidence 65 58999999876544333222221 1225699999999954 7899999999999
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC------------------------------
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH------------------------------ 344 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------------------------------ 344 (502)
+..+.+..+....|.+.|.+++...+| .|++|+.|+.|..||-.-.+.
T Consensus 273 ~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 273 SKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred eCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 998888877777999999999999998 577799999999998321100
Q ss_pred ----------ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769 345 ----------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 345 ----------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
......|......++.+|+.+ ++++++.|+.+++|+ . .++.++.. ...++.|+.|+|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~---------~k~~wt~~-~~d~~~~~~fhp 417 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--D---------HKLEWTKI-IEDPAECADFHP 417 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--C---------CceeEEEE-ecCceeEeeccC
Confidence 001123445667788888754 899999999999999 2 26666655 457789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010769 415 LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 415 ~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
.| .+|.|+..|...+.|..+... +..... ..++++++|+|+|.+ ||.|+.|+.|+||-+..+.....+.+...+
T Consensus 418 sg--~va~Gt~~G~w~V~d~e~~~l--v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 418 SG--VVAVGTATGRWFVLDTETQDL--VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cc--eEEEeeccceEEEEeccccee--EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 76 899999999999999998663 333333 789999999999995 999999999999999887776666655444
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.9e-21 Score=182.77 Aligned_cols=312 Identities=16% Similarity=0.217 Sum_probs=224.1
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
-.|.+.|.++...|.|..|++|+.+| +++||.+.++.. ++ ...+.+...|++|.+. ++-..||++
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDG---tvriWEi~TgRc----vr---~~~~d~~I~~vaw~P~-----~~~~vLAvA 461 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDG---TVRIWEIATGRC----VR---TVQFDSEIRSVAWNPL-----SDLCVLAVA 461 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCC---cEEEEEeecceE----EE---EEeecceeEEEEecCC-----CCceeEEEE
Confidence 46889999999999999999999887 678887776552 22 2234455689999532 334456666
Q ss_pred cCCCcEEEeeCCCCCCCCc---eeeeCCcch------hhhhhccccCC-ccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQP---HVILGGIDE------EKKKKKSKKGK-KSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~---~~~l~~~~~------~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.... +.|-+...++.+.. .-.|..... +...|...... ...-......|...|..|.|+..| .+|++.
T Consensus 462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV 539 (733)
T KOG0650|consen 462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV 539 (733)
T ss_pred ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence 5444 66666544422211 111111100 00111111000 111123445689999999999994 588887
Q ss_pred ecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 286 SAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 286 s~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
..+ ..|.|+++...+...-|+...+.|+++.|+|.. .+|++++ -..|++||+..+............|.+++.+|
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 654 579999998887777777678899999999998 4555554 46799999988766655556667799999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC-------C
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL-------S 435 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~-------~ 435 (502)
.|. .+++|+.++.+..||+.-. .++..++..|...+++++|++.- .++++|+.||++.||-- .
T Consensus 618 ~GD-nli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 618 NGD-NLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred CCC-eEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhc
Confidence 887 5888999999999999877 57889999999999999999987 79999999999999842 2
Q ss_pred CCCeeEEEEecCCCCC----EEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769 436 NNQPSCIASRNPKAGA----VFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 436 ~~~~~~~~~~~~~~~~----v~~~~~spd~~~llasg~~dg~i~vw 477 (502)
+.-...+..+.+|... |..+.|+|..++ |.++|.||+|++|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 2223456667777554 889999999997 7778899999998
No 149
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=1.8e-20 Score=186.15 Aligned_cols=252 Identities=18% Similarity=0.287 Sum_probs=194.3
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
..|+.+.++ +.++||.|+.+|.|.+||+.......+ .........|..+|+.+
T Consensus 245 v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 245 VTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------SGLSALEVSHSEPVTAV 297 (555)
T ss_pred eeEEEeccC------CcceEEeeccCceEEEEEccCCCCCCC---------------------cccccccccCCcCeEEE
Confidence 356666422 689999999999999999975433211 22333445799999999
Q ss_pred EecCCCC-cEEEEEecCCcEEEEECCCCee-e-----EEec------cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC
Q 010769 273 AWNKEFR-NILASASADKQVKIWDVAAGKC-N-----LTLE------HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA 339 (502)
Q Consensus 273 ~~~~~~~-~~l~sgs~Dg~v~vwd~~~~~~-~-----~~~~------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 339 (502)
.|..+-. .-++++|.||.|+.|+++.-.. + .... .-...+++++|.+..++.|+.|+..|.|..-..
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 9976521 3488999999999998764321 1 1111 123478999999999999999999999887443
Q ss_pred CCCCC--------ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE
Q 010769 340 RISTH--------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 411 (502)
Q Consensus 340 ~~~~~--------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 411 (502)
...+. ......|.+.|.++.++|....+|++++ |.+|++|..... ..++..+..+...|++++
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--------~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--------ASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC--------CCcchhhhhccceeeeeE
Confidence 32221 1234467889999999999987777777 999999998843 377888888888899999
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
|||..+.+++++..+|.|.+||+.......+.+...+....+.+.|++.|+ +|++|...|++.+|++..
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 999999999999999999999998876556666665667788899999999 699999999999999964
No 150
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.2e-20 Score=171.10 Aligned_cols=220 Identities=20% Similarity=0.334 Sum_probs=177.9
Q ss_pred ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc
Q 010769 261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 333 (502)
.+.||+.+|+.++|+|.+.+.|||||.|.+|.||.+..+ .++..+.+|...|--++|||.-.++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 456999999999999998999999999999999998654 4567788999999999999999999999999999
Q ss_pred EEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC-eeEEEE
Q 010769 334 VVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA-VCTISY 412 (502)
Q Consensus 334 i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~ 412 (502)
|.+|++.++..... ..|...|.+++|+.+|. ++++.+.|..|++||.|++ ..+..-.+|.+. -..+.|
T Consensus 156 v~iWnv~tgeali~-l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT-LDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred EEEEeccCCceeee-cCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCC---------cEeeecccccCCCcceeEE
Confidence 99999999887653 44999999999999876 8999999999999999997 666666777653 345557
Q ss_pred cCCCCCEEEEEe---CCCcEEEEECCCC-CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 413 NPLVPNLLATGS---TDKMVKLWDLSNN-QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 413 sp~~~~~l~t~s---~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
-.++ .++.||- .+.++-+||..+. ++.....+....| |.---|.++...+.++|-.|+.||-|.+.........
T Consensus 225 l~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hy 302 (472)
T KOG0303|consen 225 LASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHY 302 (472)
T ss_pred eccC-ceeeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEE
Confidence 7666 5444443 3678999998764 3445556665544 5556688998877788888999999999888765555
Q ss_pred ccCCC
Q 010769 489 FSKYS 493 (502)
Q Consensus 489 ~~~~~ 493 (502)
+..+.
T Consensus 303 ln~f~ 307 (472)
T KOG0303|consen 303 LNTFS 307 (472)
T ss_pred ecccc
Confidence 54444
No 151
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=166.61 Aligned_cols=291 Identities=19% Similarity=0.288 Sum_probs=208.0
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCC-----CCCCceeeeec--cccCCCcceeeeecCCCCCCCCCCE
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESD-----GGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~-----~~~~~l~~~~~--~~~~~~~~~~~w~~~~~~~s~~~~~ 211 (502)
.+-...+.|+|+|.-|++-+.+. .|.+|.+-... ........|.. .+-+...+...|.+.--..-|+.++
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn---~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDN---CLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred hhhhccceeCCCCceEEeecccC---eeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 34556789999999999998876 56777553211 11111111111 1112223445565432233588999
Q ss_pred EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc---ceeeEEecCCCCcEEEEEecC
Q 010769 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD---SVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~sgs~D 288 (502)
+|+.+.+.-|.+||.-++..... +....|.+ +..+|+|+|+|. .|++| ..
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraS-------------------------y~~ydh~de~taAhsL~Fs~DGe-qlfaG-yk 178 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRAS-------------------------YRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YK 178 (406)
T ss_pred eeeccccCceeeeeccccccccc-------------------------hhhhhhHHhhhhheeEEecCCCC-eEeec-cc
Confidence 99999999999999876543221 11223433 456899999965 66555 55
Q ss_pred CcEEEEEC-CCCee--eEE-e----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEe
Q 010769 289 KQVKIWDV-AAGKC--NLT-L----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAW 360 (502)
Q Consensus 289 g~v~vwd~-~~~~~--~~~-~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~ 360 (502)
.+|+++|+ +.|+. +.+ + .+..+-+.+++|+|.....++.|++...+-||.-..........+|.+.|+.++|
T Consensus 179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe
Confidence 79999999 44432 111 1 1236788999999999789999999999999988888888878899999999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-CeeE--EEEcCCCCCEEEEEeCCCcEEEEECCC-
Q 010769 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCT--ISYNPLVPNLLATGSTDKMVKLWDLSN- 436 (502)
Q Consensus 361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~--l~~sp~~~~~l~t~s~dg~i~vwd~~~- 436 (502)
.++|..++.-+..+-.|.+||+|.. ..+++.+..|.. .-.. +...|.+ .+|++|+.||.|++||+..
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~--------~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYS--------RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhc--------cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCC
Confidence 9999865555567889999999987 578888888765 3333 4446777 9999999999999999988
Q ss_pred CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d 471 (502)
+. .+..+..+...++.++++|--+ ++|+++..
T Consensus 330 gn--~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 330 GN--EVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred CC--cccccccccccccceecCcccc-eeeeccCc
Confidence 44 3556677888999999999977 68776643
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=4.9e-20 Score=160.77 Aligned_cols=207 Identities=20% Similarity=0.351 Sum_probs=167.1
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee-eEEe-----ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~-~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 337 (502)
.+-+.|.|+.|.|+ +..||+-. |..|.+|++..+.. +..+ ..|....++-+|+|...-..+....++++..|
T Consensus 121 eavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEE
Confidence 45568999999998 55676655 78999999987754 3333 23566788899999332334445568999999
Q ss_pred eCCCCCCcc-ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 338 DARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 338 d~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
|+|+..... ....|...|..+.|+|+...++++++.||.|++||.|+. ..+++.+.+|...|.++.|+|.-
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEecCcc
Confidence 999866543 234677889999999998889999999999999999988 58999999999999999999987
Q ss_pred CCEEEEEeCCCcEEEEECCCCC------------------------e---eEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769 417 PNLLATGSTDKMVKLWDLSNNQ------------------------P---SCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vwd~~~~~------------------------~---~~~~~~~~~~~~v~~~~~spd~~~llasg~ 469 (502)
..+|++|+.|..|.+|....-. | -.+.++..|...|++++|+.-.++++|+-+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 7999999999999999764311 1 124466778899999999999999999999
Q ss_pred CCCcEEEEECC
Q 010769 470 SKGKLEIWDTL 480 (502)
Q Consensus 470 ~dg~i~vwd~~ 480 (502)
.||++.|=.+.
T Consensus 351 YDGRviIs~V~ 361 (370)
T KOG1007|consen 351 YDGRVIISSVP 361 (370)
T ss_pred cCceEEeecCC
Confidence 99999886664
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.7e-21 Score=197.13 Aligned_cols=250 Identities=20% Similarity=0.324 Sum_probs=194.8
Q ss_pred cccccccccCCCce----EEEEEecCCcceeEEEEEecC--CCCCC---ceeeeeccccCCCcceeeeecCCCCCCC-CC
Q 010769 140 EDLEDMTINPNDAV----IVCARNEDDVSHLEVYILEES--DGGDP---NLYVHHHIIIPAFPLCMAWLDCPLKDRE-KG 209 (502)
Q Consensus 140 ~~v~~~~~~p~~~~----l~~~~~~~~~~~l~v~~~~~~--~~~~~---~l~~~~~~~~~~~~~~~~w~~~~~~~s~-~~ 209 (502)
..-..+.|.+.+.. ||.|..+| .|.+|.-..- ..... ....|+..+ +.+++ ++ .+
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG---~I~ly~p~~~~~~~~~~~la~~~~h~G~V-----~gLDf-------N~~q~ 129 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDG---NIVLYDPASIIANASEEVLATKSKHTGPV-----LGLDF-------NPFQG 129 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCC---ceEEecchhhccCcchHHHhhhcccCCce-----eeeec-------cccCC
Confidence 45577888888776 55555555 5666665542 11111 112333222 45555 44 47
Q ss_pred CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769 210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 289 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg 289 (502)
++||+|+.+|.|.|||+...+..... ....-.+.|.+|+|+....++|++++.+|
T Consensus 130 nlLASGa~~geI~iWDlnn~~tP~~~-------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg 184 (1049)
T KOG0307|consen 130 NLLASGADDGEILIWDLNKPETPFTP-------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSG 184 (1049)
T ss_pred ceeeccCCCCcEEEeccCCcCCCCCC-------------------------CCCCCcccceEeccchhhhHHhhccCCCC
Confidence 79999999999999999753322110 01235678999999999899999999999
Q ss_pred cEEEEECCCCeeeEEeccCCC--CeEEEEEcCCCCcEEEEEECCC---cEEEEeCCCCCCccc-eEeecCCeEEEEeCCC
Q 010769 290 QVKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDR---SVVMKDARISTHSGF-KWAVAADVESLAWDPH 363 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~ 363 (502)
.+.|||++..+.+..+..|.+ .+..|.|||+....+++++.|. .|.+||+|....... ...|...|.++.|++.
T Consensus 185 ~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 185 RAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred CceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC
Confidence 999999999988888866554 5789999999988888888764 689999997665443 4589999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+..++++++.|+.|.+|+..++ ..+..+......+..+.|+|..+.++++++.||.|.||.+....
T Consensus 265 D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9889999999999999999997 78888888889999999999998999999999999999997754
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.6e-19 Score=172.72 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=166.4
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
++++++++.++.|++||+.+...+. .+..| ..+.+++|+|++..++++++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---------------------------~~~~~-~~~~~l~~~~dg~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---------------------------TFPVG-QRPRGITLSKDGKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---------------------------EEECC-CCCCceEECCCCCEEEEEECCC
Confidence 3578899999999999987533211 12223 3467899999965455778889
Q ss_pred CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l 368 (502)
+.|++||+.+++.+..+..+.. +..++|+|++..++++++.++.|++||+++.+... .......+.+++|+|++. ++
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~-~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIPVGVEPEGMAVSPDGK-IV 129 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-EeeCCCCcceEEECCCCC-EE
Confidence 9999999999988877765443 56789999994444556678999999998765433 233344578899999876 66
Q ss_pred EEEeCCC-eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE-EEEeCCCcEEEEECCCCCeeEEEEec
Q 010769 369 VVSLEDG-TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL-ATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 369 ~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l-~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
+++..++ .+.+||.++. ....... ....+.+++|+|++ .+| +++..++.|++||+.+++........
T Consensus 130 ~~~~~~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EEEecCCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 6666554 5777898765 3333322 23345789999998 555 55567999999999987632222221
Q ss_pred C---C--CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 447 P---K--AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 447 ~---~--~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
. + ......++|+|++++++++.+.++.|.+||+.+++.+...
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 1 1 1123568899999976666666778999999988766543
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.6e-20 Score=176.27 Aligned_cols=252 Identities=20% Similarity=0.278 Sum_probs=194.5
Q ss_pred CCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce
Q 010769 190 PAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV 269 (502)
Q Consensus 190 ~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 269 (502)
|+-..|+++ +.+.+.||++-.+|.|.||++...=...+. ...+..+.|
T Consensus 25 Ps~I~slA~-------s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v-------------------------i~g~~drsI 72 (691)
T KOG2048|consen 25 PSEIVSLAY-------SHKSNQLAVSRTDGNIEIWNLSNNWFLEPV-------------------------IHGPEDRSI 72 (691)
T ss_pred ccceEEEEE-------eccCCceeeeccCCcEEEEccCCCceeeEE-------------------------EecCCCCce
Confidence 333456655 778888999999999999999752222111 111345789
Q ss_pred eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--c
Q 010769 270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--F 347 (502)
Q Consensus 270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~ 347 (502)
-+|+|.+. ..|+|.+.+|.|.-||+.++++...+....+.|++++.+|.+ ..++.|+.||.+..++........ .
T Consensus 73 E~L~W~e~--~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 73 ESLAWAEG--GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred eeEEEccC--CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEee
Confidence 99999965 368899999999999999999999999889999999999999 889999999977777776554332 1
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeCC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~d 426 (502)
+....+.+.++.|+|++. .+++|+.||.|++||...+...... ...+..+.. ...-|+++.|-.+ ..|++|..-
T Consensus 150 l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~--~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~ 224 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHII--TMQLDRLSKREPTIVWSVLFLRD--STIASGDSA 224 (691)
T ss_pred cccccceEEEEEecCCcc-EEEecccCceEEEEEcCCCceEEEe--eecccccccCCceEEEEEEEeec--CcEEEecCC
Confidence 234568899999999865 6999999999999999987320000 000011111 2234778888764 589999999
Q ss_pred CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 427 KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
|+|++||...+. ++..+..|.+.|.+++..+++.+ +.++|.|+.|..|...++..
T Consensus 225 G~V~FWd~~~gT--LiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 225 GTVTFWDSIFGT--LIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred ceEEEEcccCcc--hhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCcc
Confidence 999999999988 67788889999999999999884 88899999999998887754
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=6.7e-20 Score=177.30 Aligned_cols=300 Identities=14% Similarity=0.208 Sum_probs=223.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeee--ccccC---CCcceeeeecCCCCCCCCCC
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHH--HIIIP---AFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~--~~~~~---~~~~~~~w~~~~~~~s~~~~ 210 (502)
..|++.|.++.|+|.+..|++++.+. ++-||.-+...+ +++.. -..+. .-.+..-| +|+++
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDk---smiiW~pd~~tG----iWv~~vRlGe~gg~a~GF~g~lw-------~~n~~ 329 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADK---SMIIWKPDENTG----IWVDVVRLGEVGGSAGGFWGGLW-------SPNSN 329 (764)
T ss_pred cCcccceEEEEEccchhhheecccCc---ceEEEecCCccc----eEEEEEEeecccccccceeeEEE-------cCCCC
Confidence 46999999999999999999999987 566666555432 22111 11111 00122334 78999
Q ss_pred EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
.+++-+..|-.++|.... +..........||.+.|.++.|.|.| .+|+|.|.|.+
T Consensus 330 ~ii~~g~~Gg~hlWkt~d------------------------~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQT 384 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKD------------------------KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQT 384 (764)
T ss_pred EEEEecccCcEEEEeccC------------------------ccceeeccccccccccceeeeecCCC-CEEEEeccccc
Confidence 999999999999998211 11122333456899999999999995 59999999999
Q ss_pred EEEEECCCC----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-------------------------
Q 010769 291 VKIWDVAAG----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI------------------------- 341 (502)
Q Consensus 291 v~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~------------------------- 341 (502)
-||+-.-.. ..+..-+-|...++|+++-+.. ..|++|.....+|+|+...
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred eeeecccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 999865411 1233346688899999998864 7899999999999987530
Q ss_pred ------------------CCC---------------------------------ccceEeecCCeEEEEeCCCCCCEEEE
Q 010769 342 ------------------STH---------------------------------SGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 342 ------------------~~~---------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~ 370 (502)
+.. ....++|...|.+++.+|++. ++++
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liAS 542 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIAS 542 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEee
Confidence 000 001234556799999999865 7888
Q ss_pred EeCCC-----eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe--eEEE
Q 010769 371 SLEDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP--SCIA 443 (502)
Q Consensus 371 ~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~--~~~~ 443 (502)
++... .|++|+..+. ..+..+..|+-.|+.++|||++ ++|++.|.|.++.+|....... ....
T Consensus 543 aCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa 612 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFA 612 (764)
T ss_pred hhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhc
Confidence 76543 5899999886 6667899999999999999998 9999999999999998855321 1122
Q ss_pred EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--ccccc
Q 010769 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD--AGISN 487 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~--~~~~~ 487 (502)
....|..-|+.+.|+|++.| ++|++.|.+|+||..... +.+.+
T Consensus 613 ~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 613 CLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred cccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhhhhh
Confidence 36778888999999999997 999999999999999887 54443
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=168.13 Aligned_cols=195 Identities=15% Similarity=0.244 Sum_probs=152.9
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEEEec
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASASA 287 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs~ 287 (502)
.+.+|++...|.|++||..+++.++ .+.+|...++.++|... +.+.+.+|+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~---------------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ss 92 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLE---------------------------EFKGPPATTNGVRFISCDSPHGVISCSS 92 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhh---------------------------eecCCCCcccceEEecCCCCCeeEEecc
Confidence 4679999999999999998744433 45578888889998764 5789999999
Q ss_pred CCcEEEEECCCCeeeEEe--ccCC-CCeEEEEEcCCCCcEEEEEEC----CCcEEEEeCCCCCCc-c-ceEeecCCeEEE
Q 010769 288 DKQVKIWDVAAGKCNLTL--EHHT-DKVQAVAWNHHSPQILLSGSF----DRSVVMKDARISTHS-G-FKWAVAADVESL 358 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~-~-~~~~~~~~v~~v 358 (502)
||+|++||++.......+ ..+. .+..|++.+-.+ +++++|.. +-.|.+||+|..+.. . ....|...|+++
T Consensus 93 DG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 93 DGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred CCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 999999999987544433 4455 567778777666 77777753 678999999987762 2 234788999999
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
+|+|..++++++|+.||.|.+||+..... ...+.....|...|.++.|...+-..|.+-+...+..+|++..+
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 99999999999999999999999987632 23445555677889999999866457888888888999988654
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=162.09 Aligned_cols=254 Identities=20% Similarity=0.297 Sum_probs=193.0
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc
Q 010769 193 PLCMAWLDCPLKDREKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 193 ~~~~~w~~~~~~~s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
.+.+.|... ...+.+||+|+.- +.|.|-.++.... . ... .....|.-+
T Consensus 47 lya~~Ws~~----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e----------------------~~~-~a~fd~~YP 98 (364)
T KOG0290|consen 47 LYAMNWSVR----PDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-E----------------------LVE-DANFDHPYP 98 (364)
T ss_pred eeeeccccC----CCcceeEEEeeeccccCCeeEEEEEccCCC-c----------------------eec-cCCCCCCCC
Confidence 356777432 2346789999853 6677766652110 0 000 011368999
Q ss_pred eeeEEecCCC----CcEEEEEecCCcEEEEECCC--Cee--eEEe-----ccCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 010769 269 VLGLAWNKEF----RNILASASADKQVKIWDVAA--GKC--NLTL-----EHHTDKVQAVAWNHHSPQILLSGSFDRSVV 335 (502)
Q Consensus 269 V~~l~~~~~~----~~~l~sgs~Dg~v~vwd~~~--~~~--~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 335 (502)
++.+.|.|+. ..+|||++ ..+|+|.+.. ++. ...+ ..+..++++..|+.-.++++.+++-|-++.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT 176 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT 176 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence 9999999983 23666654 4799999873 221 1111 346689999999999999999999999999
Q ss_pred EEeCCCCCC---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEE
Q 010769 336 MKDARISTH---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 336 vwd~~~~~~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 412 (502)
|||+.++.. ...+..|...|..++|...+...|++.+.||.|++||+|.... ...++.-.....+...++|
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------STIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------STIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc------ceEEecCCCCCCcceeecc
Confidence 999998633 4556789999999999998888999999999999999998732 2233333333678999999
Q ss_pred cCCCCCEEEEEeCCC-cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 413 NPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 413 sp~~~~~l~t~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+++.++++||-..|+ .|.|.|++... ..+..+.+|.+.|+.++|.|..+..|+++|.|..+.+||+.+-.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 999999999977764 59999999865 36788999999999999999988789999999999999997643
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=4.4e-20 Score=176.55 Aligned_cols=129 Identities=23% Similarity=0.452 Sum_probs=112.2
Q ss_pred cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769 352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
...|+.+.|+|.....+++++.||.|++|.+......... ..+-..+.+|...|+++.|+|-...+|++++.|.+|++
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~--~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE--MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc--CCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence 3457889999998889999999999999999876443322 35667788999999999999987789999999999999
Q ss_pred EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
||+.+.+ ....+.+|.+.|+.++|||+|+ ++|+.+.||+|+||+.++++..
T Consensus 705 WDl~~~~--~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 705 WDLANAK--LYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred eehhhhh--hhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCc
Confidence 9999988 4567889999999999999999 6999999999999999887653
No 160
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=160.08 Aligned_cols=291 Identities=12% Similarity=0.216 Sum_probs=203.9
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I 221 (502)
.++++|++-|.+||+|+.+| .+-||.+.+- +...+..-|..++ .|++| |++|++|++++.|..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG---~vvI~D~~T~--~iar~lsaH~~pi----~sl~W-------S~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANG---RVVIYDFDTF--RIARMLSAHVRPI----TSLCW-------SRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCC---cEEEEEcccc--chhhhhhccccce----eEEEe-------cCCCCEeeeecCCcee
Confidence 78999999999999999998 4556655543 3335555555554 68888 8999999999999999
Q ss_pred EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee
Q 010769 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301 (502)
Q Consensus 222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~ 301 (502)
.+||+..+..+..+ ....+|+.+.|+|...+.++++-.+..-.+-++..++.
T Consensus 90 ~lwDl~~gs~l~ri----------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h 141 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRI----------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH 141 (405)
T ss_pred EEEeccCCCceeEE----------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence 99999876544332 24688999999998777777776666666666654321
Q ss_pred eEEecc----CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec-CCeEEEEeCCCCCCEEEEEeCCCe
Q 010769 302 NLTLEH----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA-ADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 302 ~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~dg~ 376 (502)
...-.. .+....+..|.+.| .++++|...|.+.+++..+.++........ ..|..+.++..+. +|++-+.|..
T Consensus 142 ~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRv 219 (405)
T KOG1273|consen 142 SVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRV 219 (405)
T ss_pred eeccCCCccccccccccccccCCC-CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCce
Confidence 111010 11122334578888 999999999999999999988766444433 6788899988766 8999999999
Q ss_pred EEEEECCCCCCCCCCCCCCccEEEe--cCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCeeEEEEecCCC-CCE
Q 010769 377 IKGFDIRTAKSDPDSTSQQSSFTLH--AHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLSNNQPSCIASRNPKA-GAV 452 (502)
Q Consensus 377 i~i~d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~~~~~~~~~~~~~~~-~~v 452 (502)
|+.|+++............+.+.++ ....+-.+++|+.+| .++++++ .-..++||.-..+. ++..+.+.. ...
T Consensus 220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~kgE~l 296 (405)
T KOG1273|consen 220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGS--LVKILHGTKGEEL 296 (405)
T ss_pred EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcc--eeeeecCCchhhe
Confidence 9999988432110000011112221 112344678899988 5555554 45679999999988 455566555 457
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
..+.|+|-.+ ++++- ..|.++||....-.
T Consensus 297 ~DV~whp~rp-~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 297 LDVNWHPVRP-IIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred eeccccccee-eeeec-cCCceEEEEeeccc
Confidence 7899999988 36554 78899999986543
No 161
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1e-20 Score=176.26 Aligned_cols=250 Identities=16% Similarity=0.224 Sum_probs=200.1
Q ss_pred CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC
Q 010769 128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~ 207 (502)
.|...++...-++-|.++.++|+|+.|++|+. .++|.||.+..... .+...- ..+-|.| ++++.+|
T Consensus 454 ~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---astlsiWDLAapTp---rikael---tssapaC-----yALa~sp 519 (705)
T KOG0639|consen 454 SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---ASTLSIWDLAAPTP---RIKAEL---TSSAPAC-----YALAISP 519 (705)
T ss_pred CccccccccCcccceeeeEecCCCceEEeccc---cceeeeeeccCCCc---chhhhc---CCcchhh-----hhhhcCC
Confidence 34444555556788999999999999999985 46889999876654 222111 1112222 2345599
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
|.++++++..||.|.|||+.. ..++..+.||++.+.||..+++ +..|-+|+-
T Consensus 520 DakvcFsccsdGnI~vwDLhn---------------------------q~~VrqfqGhtDGascIdis~d-GtklWTGGl 571 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHN---------------------------QTLVRQFQGHTDGASCIDISKD-GTKLWTGGL 571 (705)
T ss_pred ccceeeeeccCCcEEEEEccc---------------------------ceeeecccCCCCCceeEEecCC-CceeecCCC
Confidence 999999999999999999974 4455678899999999999999 568999999
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 367 (502)
|.+||-||+++++.+.... .++.|.++.++|++ ..|+.|-.++.+-|...+...... ...|.+.|.++.|.+.|. .
T Consensus 572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~kyq-lhlheScVLSlKFa~cGk-w 647 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEKYQ-LHLHESCVLSLKFAYCGK-W 647 (705)
T ss_pred ccceeehhhhhhhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCCcccee-ecccccEEEEEEecccCc-e
Confidence 9999999999998776654 56889999999999 899999999999998887655433 567888999999999876 8
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 368 FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
|++.+.|..+..|.+.-+ ..++... ..++|.++.++.+. ++++||+.|+...||.+
T Consensus 648 fvStGkDnlLnawrtPyG---------asiFqsk-E~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYG---------ASIFQSK-ESSSVLSCDISFDD-KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccc---------cceeecc-ccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence 999999999999988766 4444444 46789999999987 99999999998888864
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.9e-20 Score=170.40 Aligned_cols=239 Identities=13% Similarity=0.193 Sum_probs=188.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|...+|++++.||.++||.++.. .......+.-...+|.+..|.|+|...++++
T Consensus 222 Hp~~plllvaG~d~~lrifqvDGk-------------------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 222 HPTAPLLLVAGLDGTLRIFQVDGK-------------------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred cCCCceEEEecCCCcEEEEEecCc-------------------------cChhheeeeeccCccceeeecCCCceEEEec
Confidence 788999999999999999999741 1222233334568999999999976699999
Q ss_pred ecCCcEEEEECCCCeeeE--EeccCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 286 SADKQVKIWDVAAGKCNL--TLEHHT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
+.-..+..||+.+.+... ...++. ..+.....++++ ++|+..+..|.|.+.-..+...+. .+...+.|..++|+.
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~-s~KieG~v~~~~fsS 354 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT-SFKIEGVVSDFTFSS 354 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh-eeeeccEEeeEEEec
Confidence 999999999999886533 333433 356677889999 899999999999999988877665 677889999999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC----C
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSN----N 437 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~----~ 437 (502)
++. .+++++.+|.|.+||++.. .++.++.... -.-++++.++++ .+||+||..|.|.|||..+ .
T Consensus 355 dsk-~l~~~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 355 DSK-ELLASGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred CCc-EEEEEcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccC
Confidence 875 7788888999999999986 5555554322 133667777888 8999999999999999654 3
Q ss_pred CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCc
Q 010769 438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDA 483 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~--dg~i~vwd~~~~~ 483 (502)
.|.++..+..-...|++++|+|+.+ +||.++. +..+++-.+.+..
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEecccee
Confidence 4566777777788999999999998 6777665 4678888886644
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=160.05 Aligned_cols=249 Identities=17% Similarity=0.334 Sum_probs=181.4
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-------CCC
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-------KEF 278 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-------~~~ 278 (502)
||+|..|++-+.|..+++|++.....-... ++ ...-+......+ .....|...+|- |.
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~---~~----------~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~- 122 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DG----------PLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPS- 122 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCC---CC----------ccccccceeEEe-ccCCEEEEEEeeeccccCCCc-
Confidence 899999999999999999998632110000 00 000001111111 234667787875 45
Q ss_pred CcEEEEEecCCcEEEEECCCCeeeEEecc--CCC---CeEEEEEcCCCCcEEEEEECCCcEEEEeC-CCCCCcc------
Q 010769 279 RNILASASADKQVKIWDVAAGKCNLTLEH--HTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDA-RISTHSG------ 346 (502)
Q Consensus 279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~------ 346 (502)
.+++|+.+.+.-|++||.-+|+...++.+ |.. ...+|+|+|+| ..|++ +..+.|++||+ |.+....
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 57999999999999999999998877754 333 45689999999 66655 56789999999 4433211
Q ss_pred -ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769 347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 347 -~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
-..+..+-+.|++|+|.....+++|+-...+-||.-... .+++.+.+|.+.|+.++|.++| +.|.+|+.
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------~pl~llggh~gGvThL~~~edG-n~lfsGaR 270 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------RPLQLLGGHGGGVTHLQWCEDG-NKLFSGAR 270 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCC---------CceeeecccCCCeeeEEeccCc-Ceeccccc
Confidence 122346678999999998889999998888888876664 7889999999999999999999 66777665
Q ss_pred -CCcEEEEECCCCCeeEEEEecCCCC-CEEEE--EEcCCCCcEEEEEeCCCcEEEEECCC-Cc
Q 010769 426 -DKMVKLWDLSNNQPSCIASRNPKAG-AVFSV--AFSEDSPFVLAIGGSKGKLEIWDTLS-DA 483 (502)
Q Consensus 426 -dg~i~vwd~~~~~~~~~~~~~~~~~-~v~~~--~~spd~~~llasg~~dg~i~vwd~~~-~~ 483 (502)
+-.|-+||++..+- .+..+..|.+ .-..| ...|+++ +|++|+.+|.|++||+.+ +.
T Consensus 271 k~dkIl~WDiR~~~~-pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRD-PVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred CCCeEEEEeehhccc-hhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCC
Confidence 77899999998653 4556666655 33334 4468898 599999999999999988 44
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=8.9e-20 Score=175.42 Aligned_cols=275 Identities=18% Similarity=0.347 Sum_probs=205.8
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg 219 (502)
.|.+++|.|+|..|+.+..+ ++++|+...+. ...|..|.+.+ .|++| +.+|+.+|+|+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~------rlliyD~ndG~llqtLKgHKDtV-----ycVAy-------s~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS------RLLVYDTSDGTLLQPLKGHKDTV-----YCVAY-------AKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecCC------EEEEEeCCCcccccccccccceE-----EEEEE-------ccCCceeccCCCce
Confidence 79999999999988777655 78888877663 23556777766 79999 78999999999999
Q ss_pred cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~ 299 (502)
.|.||+-.....+ -..|.+.|.|++|+|- .+.|+||+-. ..-+|.....
T Consensus 76 ~VI~W~~klEG~L-----------------------------kYSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK 124 (1081)
T KOG1538|consen 76 SVIIWTSKLEGIL-----------------------------KYSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQK 124 (1081)
T ss_pred eEEEeccccccee-----------------------------eeccCCeeeEeecCch-HHHhhhcchh-hccccChhhh
Confidence 9999986421111 1269999999999998 6789998874 5778886543
Q ss_pred eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce--EeecCCeEEEEeCCCCC----CEEEEEeC
Q 010769 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--WAVAADVESLAWDPHAE----HSFVVSLE 373 (502)
Q Consensus 300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~v~~~p~~~----~~l~~~~~ 373 (502)
. +...+ ....|.+++|..+| ++|+.|-.+|+|.+-+-......... .+..++|.+++|+|... ..+++...
T Consensus 125 ~-V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 125 S-VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred h-HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence 3 22222 35678999999999 99999999999999865443332211 13567899999999632 35667777
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 453 (502)
+.++.+|.+... .+..-..-.-...|+++.++| .+++.|+.|+.+++|--..- .+-+.......|+
T Consensus 202 ~qTLSFy~LsG~----------~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~Gv---rLGTvg~~D~WIW 267 (1081)
T KOG1538|consen 202 GQTLSFYQLSGK----------QIGKDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGV---RLGTVGEQDSWIW 267 (1081)
T ss_pred cceeEEEEecce----------eecccccCCCCchhheeccCC-cEEEEccCCCceEEEeecCe---EEeeccccceeEE
Confidence 777777777632 222223334456789999998 89999999999999964432 3455555667899
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 454 ~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
+++..|++++ ++.|+.||+|.-|++...
T Consensus 268 tV~~~PNsQ~-v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 268 TVQAKPNSQY-VVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEEEccCCce-EEEEEccCeeehhhhHHh
Confidence 9999999996 899999999999998543
No 165
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.5e-20 Score=174.81 Aligned_cols=259 Identities=18% Similarity=0.222 Sum_probs=190.6
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|++....|++++.+|.|.+|++... .....+.......+.+|.++|.|++..++ +..+++
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~-------------------~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ys 361 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKA-------------------KKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYS 361 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhccc-------------------CCccccceeeeEEEecccCceEEEEecCC-ceEEEe
Confidence 3677889999999999999999420 01233446677788999999999999999 669999
Q ss_pred EecCCcEEEEECCCC----------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecC
Q 010769 285 ASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA 353 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~ 353 (502)
|+.||+|+.|++... .....+.||++.|+.+++|+.. ..|++++.||++++|............ ...+
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g 440 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG 440 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCCccccC
Confidence 999999999976421 2345678999999999999988 789999999999999988766522111 1223
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-----CCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-----HDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
...++.+-.......++....+.-.++++..... ..+....+ -...+..+.++|.+ .+.+++..|+.
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~-------~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~ 512 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD-------LLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRS 512 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhhhhhh-------eeeccccCCCcccccCccceEEecCCC-CeeEecccCCc
Confidence 3455555433222333333333333444433211 01111111 12346778889987 89999999999
Q ss_pred EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
|+++|..++. .+.....|...++++++.|+|.| |++|+.||.+++|.+....++.....++..+
T Consensus 513 Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r~~~ 576 (577)
T KOG0642|consen 513 IRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHRKKP 576 (577)
T ss_pred eecccccccc--cchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeeccccccccC
Confidence 9999999998 56777788899999999999996 8999999999999999988888877777654
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=9.4e-19 Score=152.83 Aligned_cols=269 Identities=17% Similarity=0.258 Sum_probs=193.3
Q ss_pred CCccccccccccCCCceEEEEEecCCc-----ceeEEEEEecCCCCCC--ce--eeeeccccCCCcceeeeecCCCCCCC
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDV-----SHLEVYILEESDGGDP--NL--YVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~-----~~l~v~~~~~~~~~~~--~l--~~~~~~~~~~~~~~~~w~~~~~~~s~ 207 (502)
.+.++|..++-+|.++.|++....... ...-||.+.+..+... .+ ..+-+...-+...|+.| .|
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew-------~P 133 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW-------EP 133 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE-------cC
Confidence 467899999999999888777655321 1334555544333100 01 11222122223478999 57
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC-CCcEEEEEe
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE-FRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~sgs 286 (502)
++..||+-. +..|.+|+++........ + ......+|....++-+|+|. .++.+++.
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~vae-v--------------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIVAE-V--------------------LSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchhee-e--------------------cccccccccceecccccCCCCccceEEEe-
Confidence 888888876 789999999754332110 0 00111236777888999993 35566554
Q ss_pred cCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCC
Q 010769 287 ADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHA 364 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~ 364 (502)
.|+++..||+++.++...+ ..|...|..+.|+|+-..+|++|+.||.|++||+|..+.+. .+..|...|.+|.|+|..
T Consensus 191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 5789999999998887777 57888999999999988899999999999999999877654 345788899999999988
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCC--------------------CCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDP--------------------DSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 424 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~--------------------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s 424 (502)
..++++|+.|..|.+|-...-.... .+.....+.++..|...|.+++|+.-.|-++|+-|
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 8899999999999999876543100 01112334567789999999999998899999999
Q ss_pred CCCcEEEEECC
Q 010769 425 TDKMVKLWDLS 435 (502)
Q Consensus 425 ~dg~i~vwd~~ 435 (502)
.||.+.|=.+.
T Consensus 351 YDGRviIs~V~ 361 (370)
T KOG1007|consen 351 YDGRVIISSVP 361 (370)
T ss_pred cCceEEeecCC
Confidence 99999886654
No 167
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6e-19 Score=156.02 Aligned_cols=207 Identities=19% Similarity=0.253 Sum_probs=160.8
Q ss_pred ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc
Q 010769 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS 333 (502)
Q Consensus 259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 333 (502)
...+.+|.+.|++++|+.+ +.+|++++.|++|+||+++.- ++++. .-.-+..+.+.|.|+-..++++.-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCE
Confidence 3457899999999999999 669999999999999998753 12211 1122367889999999778888888889
Q ss_pred EEEEeCCCCCC---cc--c-------eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe
Q 010769 334 VVMKDARISTH---SG--F-------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH 401 (502)
Q Consensus 334 i~vwd~~~~~~---~~--~-------~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 401 (502)
+++|-+...+- .. . ...|.-.+..+-... +..++++++.|..|.+|+++ + +.+..+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G---------q~L~~id 225 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G---------QLLQSID 225 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C---------ceeeeec
Confidence 99998754321 11 1 112334455555554 34589999999999999999 3 6677777
Q ss_pred cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC------CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEE
Q 010769 402 AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN------QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLE 475 (502)
Q Consensus 402 ~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~ 475 (502)
.....-+..+.||+| ++|++++..--|+||.+--. +...++.+.+|...|..++|+|+.. .+++.+.||+++
T Consensus 226 tnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wr 303 (420)
T KOG2096|consen 226 TNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWR 303 (420)
T ss_pred cccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEE
Confidence 777778889999999 99999999888999986432 2245778899999999999999998 599999999999
Q ss_pred EEECC
Q 010769 476 IWDTL 480 (502)
Q Consensus 476 vwd~~ 480 (502)
|||+.
T Consensus 304 iwdtd 308 (420)
T KOG2096|consen 304 IWDTD 308 (420)
T ss_pred Eeecc
Confidence 99985
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.4e-18 Score=158.62 Aligned_cols=308 Identities=20% Similarity=0.324 Sum_probs=213.1
Q ss_pred ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCCCC--ce-e----eeeccccCCCcceeeeecCCCCCCCCCC
Q 010769 139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGGDP--NL-Y----VHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~~~--~l-~----~~~~~~~~~~~~~~~w~~~~~~~s~~~~ 210 (502)
.+.|..+.|.+++. .|++|+.+. .+++|..+....... .+ | .+|+..+ .++.| +|+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~---~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aV----N~vRf-------~p~ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDK---DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAV----NVVRF-------SPDGE 78 (434)
T ss_pred CCceEEEEeccCcccceecccCcc---ceeeeeeeecCCCCCceeEEEeecccCCccee----EEEEE-------cCCcC
Confidence 35789999999877 999999887 568998876554331 11 1 2332222 46666 89999
Q ss_pred EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
+||+|+.+|.|.+|........... ... ...+........+.+|...|..++|+|+ .+++++++.|.+
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d------~e~-----~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~l~s~s~dns 146 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDAD------TEA-----DLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNFLVSGSVDNS 146 (434)
T ss_pred eeeecCCCceEEEEEecCcCCcccc------chh-----hhCccceEEEEEecccccchhhhhccCC-Cceeeeeeccce
Confidence 9999999999999987631111000 000 0112224445566789999999999999 679999999999
Q ss_pred EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-------------------eEee
Q 010769 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-------------------KWAV 351 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------~~~~ 351 (502)
+++||+..|+....+..|..-|+.++|.|.+ +++++-+.|...+.+.+...+.... ..-|
T Consensus 147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh 225 (434)
T KOG1009|consen 147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH 225 (434)
T ss_pred EEEEEeccceeEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee
Confidence 9999999999999999999999999999998 8899999888777766553322110 0001
Q ss_pred ----cCCeEEEEeCCCCCCEEEEEe----CCC-----eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC--
Q 010769 352 ----AADVESLAWDPHAEHSFVVSL----EDG-----TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV-- 416 (502)
Q Consensus 352 ----~~~v~~v~~~p~~~~~l~~~~----~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-- 416 (502)
..-...++|+|+|. ++++.. ..+ ..++|+-... .+|...+.....+...+.|+|--
T Consensus 226 DeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk~l--------~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 226 DETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRKDL--------KRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred cCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeeccccc--------cCceeecCCCCcceEEEEeeeeEEE
Confidence 12356788999876 555542 122 2345544433 46667777767777777666510
Q ss_pred ---------------CCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 417 ---------------PNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 417 ---------------~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
...+|.++ .+.|+|||..+..|..+. -.-|-..|+.++|+++|.+ |+.++.||...+--+..
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v-~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV-DNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEP 373 (434)
T ss_pred eccccccccccccccceEEEEee-cceEEEeccccccceEEE-eeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcc
Confidence 12344454 456999999998875443 3557789999999999995 77788999887777766
Q ss_pred Cccc
Q 010769 482 DAGI 485 (502)
Q Consensus 482 ~~~~ 485 (502)
.++-
T Consensus 374 ~elg 377 (434)
T KOG1009|consen 374 WELG 377 (434)
T ss_pred hhcc
Confidence 5543
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.2e-18 Score=173.83 Aligned_cols=304 Identities=18% Similarity=0.268 Sum_probs=204.7
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeecc-ccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI-IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 220 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~ 220 (502)
-..+.|+|-...++++.... .+.||.|+... .|...+.. .-+.....+..++ ..+..++++|+.||.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~---~i~vwd~e~~~----~l~~F~n~~~~~t~Vs~l~liN-----e~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRE---RIRVWDWEKGR----LLNGFDNGAFPDTRVSDLELIN-----EQDDALLLTASSDGV 1134 (1387)
T ss_pred CceeeecCCCceeEEcCCcc---eEEEEecccCc----eeccccCCCCCCCccceeeeec-----ccchhheeeeccCce
Confidence 45678889888888886333 67888887665 33333322 2233334454442 346789999999999
Q ss_pred EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe
Q 010769 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK 300 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~ 300 (502)
||||+-.......+..+.+- ..+.-...+-.+.=.-+.|....+ +|++++.-..|+|||+...+
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw---------------~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAW---------------SSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred EEEecccccccCCceeEEee---------------ccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccce
Confidence 99997532110111111000 000001111112224567888856 45555557899999999888
Q ss_pred eeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC---ccceEeecCC--eEEEEeCCCCCCEEEEEeCC
Q 010769 301 CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKWAVAAD--VESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 301 ~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d 374 (502)
+++.+. +....|+++.-+-.+++++++|..||.|++||.|.... +.....|... |..+.+.+.|-..+++|+.+
T Consensus 1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 887774 34567888876655568999999999999999997654 2223345555 89999998776679999999
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCC--C-CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEe----cC
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD--K-AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASR----NP 447 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~--~-~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~----~~ 447 (502)
|.|++||+|... ......+..|- + .++++..+++. .++|+|+. +.|+||++...+...+... ..
T Consensus 1279 G~I~~~DlR~~~-------~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q 1349 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSS-------KETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQ 1349 (1387)
T ss_pred CeEEEEecccCc-------ccccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcccccCcccccC
Confidence 999999999842 23334444443 3 58999999987 88999998 9999999987553222211 12
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 448 KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 448 ~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
..+.+.|++|+|... ++|+|..|.+|.||......
T Consensus 1350 ~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1350 RIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCCcceeeecchhH-hhhhccCCceEEEeecCCcC
Confidence 346789999999987 69999999999999876543
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.3e-19 Score=169.74 Aligned_cols=231 Identities=19% Similarity=0.285 Sum_probs=180.1
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.|.|.+||+|+.||+|+||.+.++.++.... ..+.|.||+|+|.....++++
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------------------~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------------------FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEe----------------------------ecceeEEEEecCCCCceeEEE
Confidence 6789999999999999999999887765432 335799999999866555555
Q ss_pred ecCCcEEEEECCCC-------------------------------------eeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769 286 SADKQVKIWDVAAG-------------------------------------KCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 286 s~Dg~v~vwd~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
+....+.|-+..-| +-++..-.|...|..|.||..| .+|++.
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV 539 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV 539 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence 55555555543211 0012223478899999999999 788877
Q ss_pred EC---CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769 329 SF---DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 405 (502)
Q Consensus 329 ~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~ 405 (502)
.- ...|.|+++........+....+.+.++.|+|..+ +|++++ -..|++||+... ..+..+.....
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq---------elvKkL~tg~k 608 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ---------ELVKKLLTGSK 608 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH---------HHHHHHhcCCe
Confidence 65 35789999987766655566778899999999877 455554 467999999875 66777777788
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
.|.+++++|.| .-|+.|+.|+.+..||+.-+. .....+..|...+++++|++.-+ |||+|+.||++.|+--
T Consensus 609 wiS~msihp~G-Dnli~gs~d~k~~WfDldlss-kPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 609 WISSMSIHPNG-DNLILGSYDKKMCWFDLDLSS-KPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeeecCCC-CeEEEecCCCeeEEEEcccCc-chhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEee
Confidence 99999999998 778889999999999998664 24667778899999999999999 7999999999988753
No 171
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=3.8e-18 Score=165.31 Aligned_cols=290 Identities=18% Similarity=0.220 Sum_probs=215.9
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCC----CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
-....|+|+++.+++-+..| .+.+|. .... ..+.+.+|-+.+ ..+.| +|.|.||++.+.
T Consensus 319 F~g~lw~~n~~~ii~~g~~G---g~hlWk--t~d~~~w~~~~~iSGH~~~V-----~dv~W-------~psGeflLsvs~ 381 (764)
T KOG1063|consen 319 FWGGLWSPNSNVIIAHGRTG---GFHLWK--TKDKTFWTQEPVISGHVDGV-----KDVDW-------DPSGEFLLSVSL 381 (764)
T ss_pred eeeEEEcCCCCEEEEecccC---cEEEEe--ccCccceeeccccccccccc-----eeeee-------cCCCCEEEEecc
Confidence 45678899999888887776 345555 2221 112333444433 46777 799999999999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
|.+-|||---. . +.........+-|...++|++|-+. +..+++|.....+|+|+..
T Consensus 382 DQTTRlFa~wg-~----------------------q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 382 DQTTRLFARWG-R----------------------QQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccceeeecccc-c----------------------ccceeeecccccccccceeeehccC-CceeeecccceeeeeecCc
Confidence 99999986431 0 0112223344568889999999885 5689999999999999753
Q ss_pred -------------------------------------------CCee---------------------------------
Q 010769 298 -------------------------------------------AGKC--------------------------------- 301 (502)
Q Consensus 298 -------------------------------------------~~~~--------------------------------- 301 (502)
+|..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 0000
Q ss_pred eEEeccCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769 302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 302 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 376 (502)
++.+.+|...|.+++.+|++ +++++++... .|++|+..+-........|.-.|+.++|+|++. +|++.+.|.+
T Consensus 518 v~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt 595 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR-YLLSVSRDRT 595 (764)
T ss_pred hHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc-EEEEeecCce
Confidence 01234688899999999999 9999988654 589999988777776778999999999999876 8999999999
Q ss_pred EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC--CeeEEEEecCCCCCEEE
Q 010769 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN--QPSCIASRNPKAGAVFS 454 (502)
Q Consensus 377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~ 454 (502)
+.+|......... ........|+.-|..+.|+|+. .+++|+|.|++|+||..... +..+......+..+|+.
T Consensus 596 ~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 596 VSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred EEeeeeecccchh-----hhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 9999986542111 1223377899999999999998 88999999999999999887 32222234557788999
Q ss_pred EEEcCC----CCcEEEEEeCCCcEEEEECC
Q 010769 455 VAFSED----SPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 455 ~~~spd----~~~llasg~~dg~i~vwd~~ 480 (502)
++|.|- ..++++.|-..|.|.||...
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecc
Confidence 999773 34488999999999999976
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=4.5e-18 Score=154.60 Aligned_cols=230 Identities=19% Similarity=0.291 Sum_probs=172.6
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
+.+.|.++ +.+.||+|+.|.+|.||.+.......+ .......+.+|+..|--++
T Consensus 85 LDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~--------------------ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 85 LDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRD--------------------LTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred cccccCcc------CCceeecCCCCceEEEEECCCcccccC--------------------cccceEEEeecceeEEEEe
Confidence 67888643 688999999999999999964332221 1344556779999999999
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 353 (502)
|+|...+.|+|++.|.+|.+|++.+|..+.++. |...|+++.|+.+| .+|++++.|..|+|||.|++........|.+
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccC
Confidence 999999999999999999999999999998888 99999999999999 8999999999999999999987765545543
Q ss_pred -CeEEEEeCCCCCCEEEEEe---CCCeEEEEECCCCCCCCCCCCCCccE-EEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 354 -DVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 354 -~v~~v~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
....+.|-.++. ++.+|. .+..+.+||..+.. .++. .-...+..|.---|.|+..-+.++|-.|+.
T Consensus 217 ~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~--------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 217 AKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLE--------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred CCcceeEEeccCc-eeeeccccccccceeccCccccc--------CcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence 456677777665 555553 56789999988763 3322 222344566666788877344445556999
Q ss_pred EEEEECCCCCeeE--EEEecCCCCCEEEEEEcCCC
Q 010769 429 VKLWDLSNNQPSC--IASRNPKAGAVFSVAFSEDS 461 (502)
Q Consensus 429 i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~spd~ 461 (502)
|+.|.+....|.. +.++. ...+-..+.|-|..
T Consensus 288 IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 288 IRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred eEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence 9999998876421 22222 23445567777764
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3.3e-18 Score=161.04 Aligned_cols=275 Identities=17% Similarity=0.251 Sum_probs=189.8
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
|.+.|.++.|+.+...+.++... .+..+............. +-..+|..+---............|+.++.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh------~~~~~~~~~~~s~~~~~~---p~df~pt~~h~~~rs~~~g~~~d~~~i~s~ 83 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDH------QIFKWSDVSRDSVEVAKL---PDDFVPTDMHLGGRSSGGGKGSDTLLICSN 83 (737)
T ss_pred cceeEEeecccccceEEEeccCc------eEEEeecccchhhhhhhC---CcccCCccccccccccCCCCCcceEEEEcC
Confidence 56677888888888777766533 333333322211111111 111122222100111111233567888999
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
||.+.|.+-. .+.......|.++|.|-.|+|+ +.-|++++.||.|++|. +
T Consensus 84 DGkf~il~k~----------------------------~rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWS-r 133 (737)
T KOG1524|consen 84 DGRFVILNKS----------------------------ARVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWS-R 133 (737)
T ss_pred CceEEEeccc----------------------------chhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEe-c
Confidence 9999887632 2333345689999999999999 45888999999999998 5
Q ss_pred CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769 298 AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 298 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 377 (502)
+|-...++.....+|.|++|.|+..+.+++.+ +.+.+=.+.....+..-..|.+-|.++.|++.+. ++++|++|-..
T Consensus 134 sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kf 210 (737)
T KOG1524|consen 134 SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRF 210 (737)
T ss_pred cchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeE
Confidence 66555555556789999999999977776654 5666666665555544457888999999999865 89999999999
Q ss_pred EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEE
Q 010769 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 457 (502)
++||.. ..+++.-..|..+|++++|+|+ ..++.+|.. +++ --.+..|.|+.++|
T Consensus 211 KvWD~~----------G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R-------------~~~p~~GSifnlsW 264 (737)
T KOG1524|consen 211 KIWDAQ----------GANLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR-------------FSSPRVGSIFNLSW 264 (737)
T ss_pred Eeeccc----------CcccccCChhccceeeeeeccc--cceeeeeee-eee-------------ecCCCccceEEEEE
Confidence 999987 3678888899999999999996 455555532 233 12345688999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC
Q 010769 458 SEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 458 spd~~~llasg~~dg~i~vwd~~~ 481 (502)
|+||.. +++|...|.+.+=-+-.
T Consensus 265 S~DGTQ-~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 265 SADGTQ-ATCGTSTGQLIVAYAIE 287 (737)
T ss_pred cCCCce-eeccccCceEEEeeeeh
Confidence 999995 88888888776544433
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.1e-16 Score=159.93 Aligned_cols=296 Identities=24% Similarity=0.434 Sum_probs=210.6
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC-EEEEe
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN-FMAVG 215 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~-~la~g 215 (502)
.+...+..+.+.+.+..++.++.++ .+.+|.+.........+..++...+ ..+.+ . ++++. +++..
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~-~~~~~~~~~~~ 129 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDG---TIKLWDLDNGEKLIKSLEGLHDSSV----SKLAL-----S-SPDGNSILLAS 129 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCC---cEEEEEcCCCceeEEEEeccCCCce----eeEEE-----E-CCCcceEEecc
Confidence 4778899999999999999998665 4566665554310111112121001 11111 1 24555 55554
Q ss_pred -cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec-CCcEEE
Q 010769 216 -SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKI 293 (502)
Q Consensus 216 -~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-Dg~v~v 293 (502)
..++.+.+|++... ......+..|...|.+++|+|++. .+++++. ++.+++
T Consensus 130 ~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 182 (466)
T COG2319 130 SSLDGTVKLWDLSTP--------------------------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKL 182 (466)
T ss_pred CCCCccEEEEEecCC--------------------------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEE
Confidence 44899999998740 122334557999999999999954 7777775 999999
Q ss_pred EECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769 294 WDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 294 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~p~~~~~l~~~~ 372 (502)
|++..+..+..+.+|...|.+++|+|++..++++++.|+.|++||.+...... ....+.... ...|+|.+ .++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 260 (466)
T COG2319 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGS 260 (466)
T ss_pred EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEec
Confidence 99999889999999999999999999884355566999999999888554443 233444443 33899987 5788999
Q ss_pred CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCE
Q 010769 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAV 452 (502)
Q Consensus 373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v 452 (502)
.++.+++|+++... ..+..+..|...+.++.|+|.+ ..+++++.|+.+++|++.............|...+
T Consensus 261 ~d~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
T COG2319 261 SDGTIRLWDLRSSS--------SLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331 (466)
T ss_pred CCCcEEEeeecCCC--------cEEEEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence 99999999999762 2234446789999999999976 66777888988999998887643333334677789
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 453 FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 453 ~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
..+.|.+++..++.++..++.+.+|++....
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 9999943324334443678899999998876
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2.6e-18 Score=164.55 Aligned_cols=256 Identities=15% Similarity=0.242 Sum_probs=188.1
Q ss_pred CCCCEEEE--ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 207 EKGNFMAV--GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 207 ~~~~~la~--g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
.+..++|+ .+.-|.|-||+++....+..-.+ . .+ -....|+.+.|.|-....||.
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~-p---------------------~l-~Ngt~vtDl~WdPFD~~rLAV 645 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM-P---------------------GL-FNGTLVTDLHWDPFDDERLAV 645 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccc-c---------------------cc-ccCceeeecccCCCChHHeee
Confidence 34556665 44568999999975432221110 0 11 134679999999988889999
Q ss_pred EecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEE
Q 010769 285 ASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVES 357 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 357 (502)
++.||.|++|.+..+ .+...+..|..+|+++.|||-...+|+++++|-+|++||+++......+.+|...|..
T Consensus 646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~ 725 (1012)
T KOG1445|consen 646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFG 725 (1012)
T ss_pred cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeE
Confidence 999999999998754 3556778899999999999998899999999999999999999888888899999999
Q ss_pred EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCC----CcEEEE
Q 010769 358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTD----KMVKLW 432 (502)
Q Consensus 358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~d----g~i~vw 432 (502)
++|+|+|. .+++.+.||+|++|.-+.. ..+++.-.+.. ..-..|.|.-+| +++++.+.| .+|.+|
T Consensus 726 ~AWSpdGr-~~AtVcKDg~~rVy~Prs~--------e~pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 726 IAWSPDGR-RIATVCKDGTLRVYEPRSR--------EQPVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred EEECCCCc-ceeeeecCceEEEeCCCCC--------CCccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhh
Confidence 99999986 7999999999999999987 35554443322 234567788888 777776665 458899
Q ss_pred ECCCCCeeEEE--EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCCCC
Q 010769 433 DLSNNQPSCIA--SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSKPK 496 (502)
Q Consensus 433 d~~~~~~~~~~--~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 496 (502)
|..+-....+. .+..... +.--.+.+|...+|++|-.|..|.+|.+.-.....-.+.++..+.
T Consensus 796 ~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~ 860 (1012)
T KOG1445|consen 796 DAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPV 860 (1012)
T ss_pred hhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCC
Confidence 87764322222 2222111 222345677777899999999999999977666544444444443
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.3e-18 Score=162.51 Aligned_cols=229 Identities=23% Similarity=0.326 Sum_probs=172.2
Q ss_pred ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCC-CcEEEEEECCCcEEEEe
Q 010769 261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHS-PQILLSGSFDRSVVMKD 338 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd 338 (502)
.+.||++.|+||.|+.+ +.+|+|||.|-.+.|||.-..+.++.+ .+|...|.++.|-|.. ..++++|..|..|++||
T Consensus 45 eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 56699999999999999 569999999999999999988888888 6899999999999854 36889999999999999
Q ss_pred CCCCCC----------ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCC-CCCccEEEecCCCCe
Q 010769 339 ARISTH----------SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST-SQQSSFTLHAHDKAV 407 (502)
Q Consensus 339 ~~~~~~----------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~h~~~v 407 (502)
+...+. ......|...|..++-.|.+++.|.++++||+|+-||+|......... ....+......--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 985221 122234667788899999999999999999999999999863211110 011111222223456
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------------eEEEEe-cCCC-----------CCEEEEEEcC
Q 010769 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------------SCIASR-NPKA-----------GAVFSVAFSE 459 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------------~~~~~~-~~~~-----------~~v~~~~~sp 459 (502)
.|+.++|..+.+|++|+.|-..++||.+...+ .++..+ .+|. ..++-+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 88999999999999999999999999543110 012211 1121 1256788999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 460 DSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 460 d~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+|.-+|++-+.+ .|+++|+..++.....+..
T Consensus 284 NGtElLvs~~gE-hVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 284 NGTELLVSWGGE-HVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred CCcEEEEeeCCe-EEEEEeecCCCCceeecCc
Confidence 998877766555 7999999998887766654
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.2e-18 Score=163.42 Aligned_cols=265 Identities=20% Similarity=0.339 Sum_probs=188.3
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC---C--CC--ceeeeeccccCCCcceeeeecCCCCCCCCC
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG---G--DP--NLYVHHHIIIPAFPLCMAWLDCPLKDREKG 209 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~---~--~~--~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~ 209 (502)
.|.+.|.++.|+|....|++|+.++ .|++|.+..... . ++ .++.|. +..+|+.. ++++
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~---~lk~WnLqk~~~s~~~~~epi~tfraH~-----gPVl~v~v-------~~n~ 356 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDG---TLKLWNLQKAKKSAEKDVEPILTFRAHE-----GPVLCVVV-------PSNG 356 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEecccc---chhhhhhcccCCccccceeeeEEEeccc-----CceEEEEe-------cCCc
Confidence 3678899999999999999999887 789999832111 0 01 112222 23367765 6789
Q ss_pred CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769 210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 289 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg 289 (502)
..+.+|+.||+|+.|++.... .|. ...........+.||+++|+.+++++. ...|++||.||
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~--dp~---------------ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~Dg 418 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQ--DPD---------------DSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDG 418 (577)
T ss_pred eEEEeeccCceeeeeccCCCC--Ccc---------------cccCcchhccceeccccceeeeeeccc-ccceeeecCCc
Confidence 999999999999999886211 111 011123445567899999999999998 66899999999
Q ss_pred cEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-------eecCCeEEEEe
Q 010769 290 QVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-------AVAADVESLAW 360 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~v~~ 360 (502)
+|++|+.....+ .+|.. ..+..+++.+-.......++...-+.-.++++........+. .....+..+.+
T Consensus 419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred eEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 999999876655 44422 223345566554442334444444444444444333222111 11245788899
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee
Q 010769 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS 440 (502)
Q Consensus 361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~ 440 (502)
+|..+ +.+++..++.|+++|..++ .++....+|...++++++.|+| .+|++++.|+.+++|.+....
T Consensus 498 ~~~~~-~~~~~hed~~Ir~~dn~~~---------~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~-- 564 (577)
T KOG0642|consen 498 HPTAD-ITFTAHEDRSIRFFDNKTG---------KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT-- 564 (577)
T ss_pred cCCCC-eeEecccCCceeccccccc---------ccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh--
Confidence 99875 8999999999999999997 8899999999999999999998 899999999999999987665
Q ss_pred EEEEecCC
Q 010769 441 CIASRNPK 448 (502)
Q Consensus 441 ~~~~~~~~ 448 (502)
++.....|
T Consensus 565 ~~~es~~~ 572 (577)
T KOG0642|consen 565 CVLESTAH 572 (577)
T ss_pred eeeccccc
Confidence 45554444
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.8e-18 Score=150.50 Aligned_cols=198 Identities=18% Similarity=0.263 Sum_probs=157.2
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCC-CCcEEEEEECCCcEEEEeCCCCCCccce-Eeec--CCe
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH-SPQILLSGSFDRSVVMKDARISTHSGFK-WAVA--ADV 355 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~--~~v 355 (502)
+.+|++...|+|++||..+++.+..|+++...+..+.|... ++..+.+|+.||+|++||+|........ +... .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57888888999999999999999999999999999999774 6688999999999999999987655433 2222 356
Q ss_pred EEEEeCCCCCCEEEEEe----CCCeEEEEECCCCCCCCCCCCCCccEE-EecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769 356 ESLAWDPHAEHSFVVSL----EDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430 (502)
Q Consensus 356 ~~v~~~p~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~ 430 (502)
.|++.+-. .+++++|+ .+-.|.+||+|.. .+++.. ...|..-|++++|+|..+++|++||.||.|.
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~--------qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSE--------QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccc--------cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 66666544 34677765 4678999999987 343433 4679999999999999999999999999999
Q ss_pred EEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769 431 LWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 431 vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~ 486 (502)
|||+..... -.+.....+...|.++.|..++-..|.+-+..+++.+|++..+.+..
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 999976421 12333445677899999999883347777888999999999888654
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.8e-17 Score=138.02 Aligned_cols=243 Identities=16% Similarity=0.229 Sum_probs=172.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+|.+++|++|+.+|.|.|+.+....... .+.+.+.+....++|.++|..++|..+ +|++|
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~s-----------------a~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~ 78 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGS-----------------AEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSG 78 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccc-----------------cCCCCCcceeeccccCCCeeeeeeehh---heeec
Confidence 7889999999999999999987533211 112234445566899999999999844 67777
Q ss_pred ecCCcEEEEECCCCe------eeEEe--ccC-----CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769 286 SADKQVKIWDVAAGK------CNLTL--EHH-----TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~------~~~~~--~~h-----~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 352 (502)
+. |.|+-|..+... .+... ..| -..|+++...|..+. ++.++.|+.++-||+.+++......+|.
T Consensus 79 gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 79 GD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred cC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 65 999998765321 11111 112 246889999998845 4555589999999999999988888999
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
..+.++.-...++ .+++|++||++++||+++.+........+....+..| ...|-+++.+. .+|++|+. ..+.+
T Consensus 157 DYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGgG-p~lsl 231 (325)
T KOG0649|consen 157 DYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGGG-PKLSL 231 (325)
T ss_pred ceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecCC-CceeE
Confidence 9999998844334 6999999999999999998542222111111222223 34577777664 67777664 56999
Q ss_pred EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
|.++..++.+++.+.+| +..+.|..+ .++++|..+.|.-|.+..
T Consensus 232 whLrsse~t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 232 WHLRSSESTCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EeccCCCceEEEecccc---eeEeeeecc---eEEEeccccceeeeeecc
Confidence 99999998888877754 777788776 355677677788887754
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.5e-17 Score=147.83 Aligned_cols=294 Identities=14% Similarity=0.218 Sum_probs=209.4
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCC----CCCceeeeeccccCCCcceeeeecCCCCCCCCCCE
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG----GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF 211 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~ 211 (502)
-+|..-|++++|+.++++||+|+.+. ++.||..+...- ....+..||. .+-.+|+++ .....+
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~---~~~~W~~de~~~~k~~KPI~~~~~~H---~SNIF~L~F-------~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDM---HGRVWNVDELMVRKTPKPIGVMEHPH---RSNIFSLEF-------DLENRF 119 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcc---eeeeechHHHHhhcCCCCceeccCcc---ccceEEEEE-------ccCCee
Confidence 46889999999999999999998665 667777664221 1112333332 223378877 456789
Q ss_pred EEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcE
Q 010769 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQV 291 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v 291 (502)
|.+|+.+++|.+.|+.+.+.+..+ ......+.|..+..+|. .+.|++.+.++.|
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~-------------------------~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V 173 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVA-------------------------NENNNRGDVYHMDQHPT-DNTLIVVTRAKLV 173 (609)
T ss_pred EecCCCcceeEeeecccceeeeee-------------------------cccCcccceeecccCCC-CceEEEEecCceE
Confidence 999999999999999864433221 11123358999999999 7899999999999
Q ss_pred EEEECCCCe-eeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----eecC---CeEEEEeC
Q 010769 292 KIWDVAAGK-CNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAA---DVESLAWD 361 (502)
Q Consensus 292 ~vwd~~~~~-~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~---~v~~v~~~ 361 (502)
.+||.+..+ .+. .+........++.|+|..+.+|++.+..+-+.+||.|.+....... ..+. .-..+.|+
T Consensus 174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 999998654 222 2233456788899999999999999999999999999876544322 2222 23568899
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-------CCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
|.|. .|++-.....-.+||+-.. ..+++.+. |. ..+.+++|..+ ..+++|+.+-.|++|.+
T Consensus 254 ~~G~-Q~msiRR~~~P~~~D~~S~--------R~~V~k~D-~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 254 PSGN-QFMSIRRGKCPLYFDFISQ--------RCFVLKSD-HNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCC-eehhhhccCCCEEeeeecc--------cceeEecc-CCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEec
Confidence 9876 5555555555667887654 12333333 22 24566777764 56999999999999988
Q ss_pred CCCC---------------------eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 435 SNNQ---------------------PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 435 ~~~~---------------------~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
.... ...+..+.+|..-+..+.|+|... +|+++|-...++||.-..
T Consensus 322 P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 322 PRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDHR 388 (609)
T ss_pred CCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc-eEeccchhhheecccccc
Confidence 5421 012456788999999999999876 799999999999997643
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.7e-17 Score=147.72 Aligned_cols=244 Identities=15% Similarity=0.193 Sum_probs=180.7
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
||.++++||+|+.|..+++|+++..- ..+..+.+...-..|...|.||+|+.. ..+|++
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~--------------------~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~S 122 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELM--------------------VRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYS 122 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHH--------------------hhcCCCCceeccCccccceEEEEEccC-CeeEec
Confidence 38889999999999999999986310 011112222333467789999999987 569999
Q ss_pred EecCCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---EeecCCeEEEE
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLA 359 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~ 359 (502)
|..+++|.+.|+.+.+.+..+.. ..+.|..+..+|.. +.|++.+.++.|.+||.|........ ........++.
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 99999999999999988887752 23589999999997 89999999999999999976532222 23355678899
Q ss_pred eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
|+|..+.++++.+..+-+.+||.|... .++....+. ...-.++.|+|+| +.|.+--.-..-.+||
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~--------~~~~~~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQA--------RPVYQRSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFD 272 (609)
T ss_pred ecCCCceeEEeccccCCCCceeecccc--------chHHhhhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEee
Confidence 999999999999999999999999873 344332221 2223578899998 5666655555667889
Q ss_pred CCCCCeeEEEEecCC------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 434 LSNNQPSCIASRNPK------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
+-..+. .++.+... ...+.+++|..+.. +++|+.+-.|++|.+...
T Consensus 273 ~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 273 FISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred eecccc-eeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCC
Confidence 887653 33343321 12466788887754 899999999999998543
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=9.3e-17 Score=159.89 Aligned_cols=267 Identities=17% Similarity=0.215 Sum_probs=187.7
Q ss_pred ccccccccccCCCceEEE-EEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 139 SEDLEDMTINPNDAVIVC-ARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~-~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
...|.++.|+|....+++ |+.+| .+-+|.........+....-+....+...+.+.|+.. +.+.-+++++.
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~G---qV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~-----~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNG---QVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN-----EHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCc---eEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc-----CCCCceEEEec
Confidence 457999999999765555 45555 4555555544432123333344444556678888752 33366888888
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE--
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD-- 295 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd-- 295 (502)
||.|..|+++..........+.. .........-...+++++|.+...+.++.|+..|.|..=.
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~---------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLES---------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred CCcEeeeeccccccchhhccccc---------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 99999998865333211111110 0000011123467899999998888999999999988733
Q ss_pred -CCCCe-----eeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC-CCCCccceEeecCCeEEEEeCCCCCCEE
Q 010769 296 -VAAGK-----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR-ISTHSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 296 -~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~v~~~p~~~~~l 368 (502)
..... .+..+..|.++|.++.++|-+..+|++++ |-+++||... ..............+++++|+|..+.+|
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 22221 23355678999999999999977777777 9999999988 4444443445556699999999999899
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
+++..+|.|.+||+.... ..++.+...+....+.+.|++.| .+|++|...|++++|++...
T Consensus 458 ~~~d~~G~l~iWDLl~~~-------~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 458 ATVDGDGNLDIWDLLQDD-------EEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEcCCCceehhhhhccc-------cCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCch
Confidence 999999999999998764 36666666667778888999988 99999999999999999643
No 183
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=3.5e-17 Score=145.58 Aligned_cols=217 Identities=17% Similarity=0.310 Sum_probs=168.6
Q ss_pred CcccceeeEEecCC---CCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769 264 SHTDSVLGLAWNKE---FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 264 ~h~~~V~~l~~~~~---~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
.|......++|+-+ +..+||.|+.-|.|+|.|+.++++...+.+|...|+.+.++|..++++++++.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36677788888643 345889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceE---eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC------------------CCCCCCCccE-
Q 010769 341 ISTHSGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD------------------PDSTSQQSSF- 398 (502)
Q Consensus 341 ~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~------------------~~~~~~~~~~- 398 (502)
+..++..+- +|...|.++.|++++. ++++++.|.+|++|++...... +.....-+.+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 998876544 5788899999999987 8999999999999999843210 0000111222
Q ss_pred EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC-C-----------eeEEEEecCCCCCEEEEE--EcCCCCcE
Q 010769 399 TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN-Q-----------PSCIASRNPKAGAVFSVA--FSEDSPFV 464 (502)
Q Consensus 399 ~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~-~-----------~~~~~~~~~~~~~v~~~~--~spd~~~l 464 (502)
+-..|...|-|+.|-- .++++-|-++.|..|..... + ...+..+......|+-+. |.|-+. +
T Consensus 246 t~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~ 321 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-M 321 (385)
T ss_pred ccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-H
Confidence 3346888899998883 78999899999999987211 1 112333444445565554 456677 6
Q ss_pred EEEEeCCCcEEEEECCCCccc
Q 010769 465 LAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 465 lasg~~dg~i~vwd~~~~~~~ 485 (502)
||.|+..|.|.+||+......
T Consensus 322 la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred HhhccCCCcEEEEECCCCCCc
Confidence 999999999999999988874
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.2e-15 Score=146.15 Aligned_cols=242 Identities=11% Similarity=0.126 Sum_probs=152.4
Q ss_pred CCCCCEEEEec-CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 206 REKGNFMAVGS-MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~-~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
+|++++|++++ .++.|.+|+++....+... . .. ........++|+|+++ +|++
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------------------~--~~---~~~~~p~~i~~~~~g~-~l~v 96 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------------------A--ES---PLPGSPTHISTDHQGR-FLFS 96 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEe--------------------e--ee---cCCCCceEEEECCCCC-EEEE
Confidence 89999987764 4789999998621111100 0 00 1123457899999955 5555
Q ss_pred Ee-cCCcEEEEECCC-C---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc------ceEeecC
Q 010769 285 AS-ADKQVKIWDVAA-G---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FKWAVAA 353 (502)
Q Consensus 285 gs-~Dg~v~vwd~~~-~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~ 353 (502)
++ .++.|.+|++.+ + +.+..+. +.....+++++|++..++++...++.|.+||+.+..... .......
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~ 175 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA 175 (330)
T ss_pred EEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC
Confidence 54 589999999974 2 2233333 234567789999994455666677999999997633221 0112344
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC------CCCeeEEEEcCCCCCEEEEEe-CC
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGS-TD 426 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s-~d 426 (502)
....+.|+|++..++++...++.|.+|++...... ...+..+..+ ......+.++|++ ++|+++. .+
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~ 249 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTA 249 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCC
Confidence 56789999988744444445999999999742100 1222222221 1233468899998 6777664 47
Q ss_pred CcEEEEECCCCC--eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 427 KMVKLWDLSNNQ--PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 427 g~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
+.|.+|++.... ...+..... ......+.|+|+|++++++...+++|.+|++..
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 899999986533 112222221 124557899999998777666689999998853
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=142.34 Aligned_cols=290 Identities=16% Similarity=0.232 Sum_probs=189.0
Q ss_pred CCcccCCCCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCC
Q 010769 128 DPYLKDKDDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDRE 207 (502)
Q Consensus 128 d~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~ 207 (502)
||+..++ .|...|+++.|..+++ |.+|...| .+.+|.+..... .+.+..++. .++.|+.. -|
T Consensus 5 dP~fvLR--p~~~~v~s~~fqa~~r-L~sg~~~G---~V~~w~lqt~r~-~~~~r~~g~-------~~it~lq~----~p 66 (323)
T KOG0322|consen 5 DPFFVLR--PHSSSVTSVLFQANER-LMSGLSVG---IVKMWVLQTERD-LPLIRLFGR-------LFITNLQS----IP 66 (323)
T ss_pred CCeeEec--cccchheehhhccchh-hhcccccc---eEEEEEeecCcc-chhhhhhcc-------ceeeceee----cC
Confidence 5655554 4778999999999998 56676555 789999987654 112222332 45556543 23
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+..|.+-+.|+.+.+|++...... .-|.-.++++-|.+. -+...+.
T Consensus 67 -~d~l~tqgRd~~L~lw~ia~s~~i------------------------------~i~Si~~nslgFCrf---Sl~~~~k 112 (323)
T KOG0322|consen 67 -NDSLDTQGRDPLLILWTIAYSAFI------------------------------SIHSIVVNSLGFCRF---SLVKKPK 112 (323)
T ss_pred -CcchhhcCCCceEEEEEccCcceE------------------------------EEeeeeccccccccc---eeccCCC
Confidence 367888889999999999742111 124444555555443 1111111
Q ss_pred CC-c-----------EEEEECCCCeeeEEe----ccCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCc----
Q 010769 288 DK-Q-----------VKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS---- 345 (502)
Q Consensus 288 Dg-~-----------v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~---- 345 (502)
.. . +.+-|......++.. .+..+.+.|..|..... -+|++|..+|.+.+||+.++...
T Consensus 113 ~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~ 192 (323)
T KOG0322|consen 113 NSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP 192 (323)
T ss_pred cchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence 10 1 122222211112211 12345677777543322 35677888999999999986322
Q ss_pred ------cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769 346 ------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 346 ------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
.....|..+|.++.+.+.-. .=++|+.+..+..|.+.-..... +....+....-.|..+.+-|++ +.
T Consensus 193 ~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gsl-----q~~~e~~lknpGv~gvrIRpD~-KI 265 (323)
T KOG0322|consen 193 QSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSL-----QIRKEITLKNPGVSGVRIRPDG-KI 265 (323)
T ss_pred cccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcc-----cccceEEecCCCccceEEccCC-cE
Confidence 22335778899999987433 45666777778888876542111 1122223334568899999998 99
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
+||++.|+.||||+.++.+| +..+..|.+.|++++|+|+.+ ++|+++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 99999999999999999985 555667889999999999988 7999999999999986
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=8.9e-16 Score=153.26 Aligned_cols=307 Identities=16% Similarity=0.210 Sum_probs=201.2
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCC--CCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDG--GDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg 219 (502)
-..+.+++.+.+.+...... +.+|....... .......||... ..|.+. ||+++++|+|..||
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~----~~~~~v~~~~~~~~~~~~~~~Htf~----~t~~~~-------spn~~~~Aa~d~dG 227 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCK----IHIYFVPKHTKHTSSRDITVHHTFN----ITCVAL-------SPNERYLAAGDSDG 227 (792)
T ss_pred CccEEEcCCceEEEEEEeee----EEEEEecccceeeccchhhhhhccc----ceeEEe-------ccccceEEEeccCC
Confidence 56788889999888887663 34444444221 111223455433 245444 89999999999999
Q ss_pred cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~ 299 (502)
.|.+|.--.. .........+.-|...|++++|+++| .+|+||+..|.+.+|.+.++
T Consensus 228 rI~vw~d~~~-----------------------~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 228 RILVWRDFGS-----------------------SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cEEEEecccc-----------------------ccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCC
Confidence 9999974320 01112222445688999999999995 59999999999999999998
Q ss_pred eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-----------eEeecCCeEEEEeCCCCCCEE
Q 010769 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-----------KWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----------~~~~~~~v~~v~~~p~~~~~l 368 (502)
+ .+-+..-.++|..+.++|++ .+.+....|+.|.+........... .....+-.+.++++|. .+.+
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~ 360 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSL 360 (792)
T ss_pred C-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCce
Confidence 8 34445568899999999999 7777777899999887643222111 1112334667888884 3467
Q ss_pred EEEeCCCeEEEEECCCCCCCCC------------------------------------------CC------------CC
Q 010769 369 VVSLEDGTIKGFDIRTAKSDPD------------------------------------------ST------------SQ 394 (502)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~------------------------------------------~~------------~~ 394 (502)
+..+..|.|++||+.+...... .. ..
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 7778889999998876543000 00 00
Q ss_pred CccE-----EEecCCCCeeEEEEcC-CCCCEEEEEeCCCcEEEEECCCC--------CeeEEEEecCCCCCEEEEEEcCC
Q 010769 395 QSSF-----TLHAHDKAVCTISYNP-LVPNLLATGSTDKMVKLWDLSNN--------QPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 395 ~~~~-----~~~~h~~~v~~l~~sp-~~~~~l~t~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~v~~~~~spd 460 (502)
..-+ ....|...+...++.+ .....++|++.||.++||-+... ...|......|..++++++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 0000 0123544444444443 33238899999999999988432 12344444457889999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 461 ~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
|. +| +.+.+++|.+||..+...+...++.+
T Consensus 521 Gs-ll-a~s~~~~Itiwd~~~~~~l~~~~~~~ 550 (792)
T KOG1963|consen 521 GS-LL-AVSFDDTITIWDYDTKNELLCTEGSR 550 (792)
T ss_pred Cc-EE-EEecCCEEEEecCCChhhhhcccccc
Confidence 97 45 46778899999998854443333333
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=9.8e-16 Score=138.66 Aligned_cols=230 Identities=17% Similarity=0.226 Sum_probs=169.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
..+...|.+|+.+|. ++|+.+...... ......-.|.-+-|+.. ++|..
T Consensus 14 Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~---------------------------~~~~~~~~IvEmLFSSS---LvaiV 62 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDGY-KIFSCSPFEKCF---------------------------SKDTEGVSIVEMLFSSS---LVAIV 62 (391)
T ss_pred ccceeEEEccCCCce-eEEecCchHHhh---------------------------cccCCCeEEEEeecccc---eeEEE
Confidence 678889999999885 477776432211 01112234555566654 66666
Q ss_pred ecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ecCCeEEEEe
Q 010769 286 SADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADVESLAW 360 (502)
Q Consensus 286 s~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~v~~ 360 (502)
+.+. .+++++++.+..+..+. ....|.++.++.+ .|+++-.+. |+|||++..+....... +...+.++++
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred ecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence 6654 49999999888888776 4678999999874 466555444 99999998776554332 3334555555
Q ss_pred CCCCCCEEEE--EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCC
Q 010769 361 DPHAEHSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNN 437 (502)
Q Consensus 361 ~p~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~ 437 (502)
++.+. +++. +...|.|.+||+.+. +++..+.+|.+++.+++|+++| .+|||+|..|+ ||||.+.++
T Consensus 138 n~~n~-ylAyp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 138 NNANC-YLAYPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCCCc-eEEecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCc
Confidence 55433 3443 346789999999987 8889999999999999999999 99999999998 799999999
Q ss_pred CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 438 QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+....+.+......|.+++|+|++++ |++.|+.++|+||.+....
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence 85444444444556899999999995 8888899999999997654
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=6.5e-17 Score=147.75 Aligned_cols=255 Identities=20% Similarity=0.249 Sum_probs=174.1
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
.++||+|+.|..|+||.+........ ..+-.....+..|..+|+++.|+|+ +.+||||+.+
T Consensus 26 ~~~laT~G~D~~iriW~v~r~~~~~~------------------~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~ 86 (434)
T KOG1009|consen 26 LNKLATAGGDKDIRIWKVNRSEPGGG------------------DMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDG 86 (434)
T ss_pred ccceecccCccceeeeeeeecCCCCC------------------ceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCC
Confidence 44999999999999999975433221 0123344567789999999999999 5699999999
Q ss_pred CcEEEEECC--------C--------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769 289 KQVKIWDVA--------A--------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 289 g~v~vwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 352 (502)
|.|.+|-.. + ....+.+.+|...|..++|+|++ .++++++.|..+++||++.+........|.
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccc
Confidence 999999765 2 23456678899999999999999 999999999999999999999988888999
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC-----------CCCCccEEEe---cCCCCeeEEEEcCCCCC
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-----------TSQQSSFTLH---AHDKAVCTISYNPLVPN 418 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~~~~~~---~h~~~v~~l~~sp~~~~ 418 (502)
..+.-++|.|.+. ++++-+.|...+.+.+......... .......++. .-..-...++|+|+| .
T Consensus 166 ~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~ 243 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-S 243 (434)
T ss_pred cccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-c
Confidence 9999999999765 6777777776666665443210000 0000111111 112335667899998 7
Q ss_pred EEEEEeC----CCc-----EEEEECCCCCeeEEEEecCCCCCEEEEEEcCC-----------------CCcEEEEEeCCC
Q 010769 419 LLATGST----DKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----------------SPFVLAIGGSKG 472 (502)
Q Consensus 419 ~l~t~s~----dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----------------~~~llasg~~dg 472 (502)
+|++.+. .+. .++|+-...+ .....+.....+...+.|+|= .+.++|.++.+
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~-rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~- 321 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLK-RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN- 321 (434)
T ss_pred EEEcccceeeeCCceeeceeEeecccccc-CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-
Confidence 8877543 222 3455433222 123334444444555555441 12256666554
Q ss_pred cEEEEECCCCccccc
Q 010769 473 KLEIWDTLSDAGISN 487 (502)
Q Consensus 473 ~i~vwd~~~~~~~~~ 487 (502)
.|+|||..+-.++..
T Consensus 322 svyvydtq~~~P~~~ 336 (434)
T KOG1009|consen 322 SVYVYDTQTLEPLAV 336 (434)
T ss_pred eEEEeccccccceEE
Confidence 799999988665543
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=7.2e-18 Score=166.32 Aligned_cols=237 Identities=23% Similarity=0.371 Sum_probs=181.0
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|...|.++++|+.|..++||..++..++. ...||.+.|+.++.+.+ ..++++
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lA---------------------------s~rGhs~ditdlavs~~-n~~iaa 249 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLA---------------------------SCRGHSGDITDLAVSSN-NTMIAA 249 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhc---------------------------cCCCCccccchhccchh-hhhhhh
Confidence 36789999999999999999987654443 44589999999999988 669999
Q ss_pred EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCcc---ceEeecC-------
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSG---FKWAVAA------- 353 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~---~~~~~~~------- 353 (502)
+|.|..|++|.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+- ..... .......
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence 9999999999999999999999999999999999953 778899999999881 11000 0000001
Q ss_pred -------------------CeEEEEeCCC----------CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC
Q 010769 354 -------------------DVESLAWDPH----------AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404 (502)
Q Consensus 354 -------------------~v~~v~~~p~----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~ 404 (502)
...+++|... ...+.+++-.+-.+.+|++.++ .....+.+|.
T Consensus 325 ~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghs 395 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHS 395 (1113)
T ss_pred cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccc
Confidence 1222223221 1122333334455677777776 6677788899
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
..+..+.++|.++....+++.||...|||+..+.+...+. .+| +.+....||++|.. ++....-|.++|.....++.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~kl~d~kFSqdgts-~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-GKLVDGKFSQDGTS-IALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-ceeeccccCCCCce-EecCCCCCceEEeccCCCcc
Confidence 9999999999998899999999999999999998765555 444 66888899999985 77777778999998876665
Q ss_pred cc
Q 010769 485 IS 486 (502)
Q Consensus 485 ~~ 486 (502)
..
T Consensus 473 ~k 474 (1113)
T KOG0644|consen 473 QK 474 (1113)
T ss_pred cc
Confidence 43
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.2e-16 Score=143.52 Aligned_cols=204 Identities=18% Similarity=0.173 Sum_probs=156.6
Q ss_pred eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769 270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW 349 (502)
Q Consensus 270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 349 (502)
.+++|+.+ +..|++|+.||++|||+..+...+.....|...|.+|.|+|++ .+|++.+.| ..+||+++++.......
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcC
Confidence 78999999 4599999999999999988888888888899999999999999 999999999 99999999985554333
Q ss_pred e--ecCCeEEEEeCCCC---CCEEEE-EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE
Q 010769 350 A--VAADVESLAWDPHA---EHSFVV-SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 350 ~--~~~~v~~v~~~p~~---~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
. .......+.|+.++ ..++++ -..-+.|+.|++....... .-+..+.......|++++.+++| ++++.|
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 2 22335667777654 222333 2345567777776553210 11233333344579999999998 999999
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+.||.|-|++..+.+. .......|.+.|+.+.|+|+.++ +++-+.+..+.|..+.-..
T Consensus 300 T~dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred ccCCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEeecc
Confidence 9999999999988874 34456789999999999999997 7778888888888876543
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=2.1e-15 Score=150.52 Aligned_cols=244 Identities=32% Similarity=0.480 Sum_probs=187.9
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc-cceeeEEe-cCCCCcEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT-DSVLGLAW-NKEFRNILA 283 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-~~~~~~~l~ 283 (502)
.+.+..++.++.++.+.+|+..... .....+.++. ..+..+.+ ++++..+++
T Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 74 SPDGELLLSGSSDGTIKLWDLDNGE--------------------------KLIKSLEGLHDSSVSKLALSSPDGNSILL 127 (466)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCc--------------------------eeEEEEeccCCCceeeEEEECCCcceEEe
Confidence 5778999999999999999987532 0111112222 36777777 777443555
Q ss_pred EEec-CCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCCCCccceEeecCCeEEEEe
Q 010769 284 SASA-DKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWAVAADVESLAW 360 (502)
Q Consensus 284 sgs~-Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~ 360 (502)
..+. |+.+.+|++.. ......+..|...|..++|+|++ ..+++++. ++.+++|++...........|...+.+++|
T Consensus 128 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred ccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 5444 99999999998 78888889999999999999999 67888875 999999999986665555567889999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE-EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 361 DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 361 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
+|.+..++++++.++.|++||.+.. .... .+..|...+ ...|+|++ .++++++.|+.+++|++.....
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTG---------KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCC---------cEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc
Confidence 9887634555589999999988844 4444 577787775 44899988 8888999999999999997764
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
.+.....|...|.++.|.|++.. +++++.++.+++|++.+........
T Consensus 276 -~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 276 -LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred -EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee
Confidence 23333677889999999998875 5558888899999998877655444
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=7.1e-16 Score=136.99 Aligned_cols=251 Identities=19% Similarity=0.255 Sum_probs=184.5
Q ss_pred cCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc
Q 010769 189 IPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS 268 (502)
Q Consensus 189 ~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 268 (502)
+....+|.+| ++++..+|++.....|.||.....+. ....+.+..|...
T Consensus 9 ~~~pitchAw-------n~drt~iAv~~~~~evhiy~~~~~~~------------------------w~~~htls~Hd~~ 57 (361)
T KOG1523|consen 9 LLEPITCHAW-------NSDRTQIAVSPNNHEVHIYSMLGADL------------------------WEPAHTLSEHDKI 57 (361)
T ss_pred ccCceeeeee-------cCCCceEEeccCCceEEEEEecCCCC------------------------ceeceehhhhCcc
Confidence 3455578888 78999999999999999999865433 3344456679999
Q ss_pred eeeEEecCCCCcEEEEEecCCcEEEEECC-CC--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-
Q 010769 269 VLGLAWNKEFRNILASASADKQVKIWDVA-AG--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH- 344 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~-~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~- 344 (502)
|++|.|+|. .+.|++|+.|..-+||... .+ ++...+..++..++++.|+|.+ +.|++|+.-..|.||-+.....
T Consensus 58 vtgvdWap~-snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 58 VTGVDWAPK-SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred eeEEeecCC-CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccce
Confidence 999999999 6799999999999999983 33 4555666789999999999999 8999999999999998876543
Q ss_pred ---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC---------CCCCccEEEecCCCCeeEEEE
Q 010769 345 ---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS---------TSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 345 ---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~h~~~v~~l~~ 412 (502)
......+.+.|+++.|+|++ -++++|+.|+..++|..--......+ +-......+....+.|..+.|
T Consensus 136 WVsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 136 WVSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred ehhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 22344667889999999975 48899999999999875322111100 001122233345688999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769 413 NPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vw 477 (502)
+|.| ..|+-.+.|+++.+-|....... +.......-+..++.|-.+.. ++++|.+..-.++
T Consensus 215 s~sG-~~lawv~Hds~v~~~da~~p~~~-v~~~~~~~lP~ls~~~ise~~--vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 215 SPSG-NRLAWVGHDSTVSFVDAAGPSER-VQSVATAQLPLLSVSWISENS--VVAAGYDCGPVLF 275 (361)
T ss_pred CCCC-CEeeEecCCCceEEeecCCCchh-ccchhhccCCceeeEeecCCc--eeecCCCCCceEE
Confidence 9998 89999999999999998776432 222222236788888876654 4555666433333
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.3e-15 Score=126.55 Aligned_cols=288 Identities=16% Similarity=0.216 Sum_probs=180.4
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCC---CCcee--eeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG---DPNLY--VHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~---~~~l~--~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~ 214 (502)
..|.+-+++|.+++|++|...+++..+.+-........ ...+. .-|+.++ ..+.+ ...+|++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpi----y~~~f---------~d~~Lls 77 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPI----YYLAF---------HDDFLLS 77 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCe----eeeee---------ehhheee
Confidence 35778899999999999999996544444433322211 11111 1233222 33333 2567777
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
|+ ||.|+=|..+........ +..+.. +.+...-....-.|+++...|. .+-++.++.|+.+.-|
T Consensus 78 ~g-dG~V~gw~W~E~~es~~~---------K~lwe~-----~~P~~~~~~evPeINam~ldP~-enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 78 GG-DGLVYGWEWNEEEESLAT---------KRLWEV-----KIPMQVDAVEVPEINAMWLDPS-ENSILFAGGDGVIYQV 141 (325)
T ss_pred cc-CceEEEeeehhhhhhccc---------hhhhhh-----cCccccCcccCCccceeEeccC-CCcEEEecCCeEEEEE
Confidence 76 499999987643221000 000000 0000010122346899999998 5566666789999999
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe----------ecCCeEEEEeCCCC
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA----------VAADVESLAWDPHA 364 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------~~~~v~~v~~~p~~ 364 (502)
|+++|+..+++++|++.|.++.-.... ..+++|+.||++++||+++++....... ....|-+++-+.
T Consensus 142 dlE~G~i~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-- 218 (325)
T KOG0649|consen 142 DLEDGRIQREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-- 218 (325)
T ss_pred EecCCEEEEEEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--
Confidence 999999999999999999999885544 5799999999999999999887653321 223466666553
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. .+++| ....+.+|.+|.. .+...+. ...++..+.|-. .++++++..+.|.-|.+..- ....
T Consensus 219 d-WlvCG-gGp~lslwhLrss---------e~t~vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gv---l~a~ 280 (325)
T KOG0649|consen 219 D-WLVCG-GGPKLSLWHLRSS---------ESTCVFP-IPARVHLVDFVD---DCVLIGGEGNHVQSYTLNGV---LQAN 280 (325)
T ss_pred c-eEEec-CCCceeEEeccCC---------CceEEEe-cccceeEeeeec---ceEEEeccccceeeeeeccE---EEEe
Confidence 2 45544 4667999999986 3333333 334566677774 67888888888999987542 1222
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vw 477 (502)
.+......++..|+..--.+|..+|....+.|+
T Consensus 281 ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 281 IPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccCCccceeeecccCCceEEEEecccceeeeee
Confidence 222233455666654332346667777777765
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1e-15 Score=155.01 Aligned_cols=247 Identities=18% Similarity=0.215 Sum_probs=174.5
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-CCCCcEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILA 283 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~ 283 (502)
|+|=...++++...-.|+|||...+..+..+- .-..-...|+.|.+- .+...+|+
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~------------------------n~~~~~t~Vs~l~liNe~D~aLlL 1127 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFD------------------------NGAFPDTRVSDLELINEQDDALLL 1127 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceecccc------------------------CCCCCCCccceeeeecccchhhee
Confidence 35557788888877899999997654432211 000233568888874 34466899
Q ss_pred EEecCCcEEEEECC-----CCeeeEEecc-------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-Ee
Q 010769 284 SASADKQVKIWDVA-----AGKCNLTLEH-------HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-WA 350 (502)
Q Consensus 284 sgs~Dg~v~vwd~~-----~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~ 350 (502)
+|+.||.|+||+-- +.+.+..+.+ ..+.-.-+.|.... .+|++++.-..|+|||........-. ..
T Consensus 1128 tas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1128 TASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccC
Confidence 99999999999742 2233333321 11222446788777 45555666889999999876554321 23
Q ss_pred ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCC--eeEEEEcCCCCCEEEEEeCCCc
Q 010769 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKA--VCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
....++++.-+....+.+++|..||.|++||.|.... ...+.....|+.. |..+.+.+.|-..|++|+.+|.
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 4455777776665667999999999999999998742 2356677788877 9999999988667999999999
Q ss_pred EEEEECCCCCeeEEEEecCCC--C-CEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 429 VKLWDLSNNQPSCIASRNPKA--G-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~--~-~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
|++||++........+...|. | .++++..++..+ ++|+|+. +.|+||++.....
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhh
Confidence 999999985322333333332 3 599999999999 7998888 8999999976554
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=148.98 Aligned_cols=307 Identities=14% Similarity=0.166 Sum_probs=217.0
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
..|.+-|+.+.|+..|..|++|+.+. .+-+|.|........-...|...+ +...|+++ .+..-++++
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~---~vv~WdW~~~~~~l~f~SGH~~Nv-----fQaKFiP~-----s~d~ti~~~ 205 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDL---QVVVWDWVSGSPKLSFESGHCNNV-----FQAKFIPF-----SGDRTIVTS 205 (559)
T ss_pred cCCCCccceeeecccCceeeccCccc---eEEeehhhccCcccccccccccch-----hhhhccCC-----CCCcCceec
Confidence 56899999999999999999999775 567777766554111112333333 33344433 346678999
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
+.||.+++=.+.....+. ....+..|.++|.-++.-|...+.|.|++.|+.|.-.|
T Consensus 206 s~dgqvr~s~i~~t~~~e------------------------~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~D 261 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVE------------------------NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHID 261 (559)
T ss_pred cccCceeeeeecccccee------------------------cceecccccCccceeeecCCCCCcccccccccceeeee
Confidence 999999998775322221 22344579999999999999889999999999999999
Q ss_pred CCCCeeeEEe---ccCCC---CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc------ceE------eecCCeEE
Q 010769 296 VAAGKCNLTL---EHHTD---KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG------FKW------AVAADVES 357 (502)
Q Consensus 296 ~~~~~~~~~~---~~h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~------~~~~~v~~ 357 (502)
++++.+...+ ..+.. ...+++.+|...+.+++|+.|..+++||.|.-.... .+. ...-.|++
T Consensus 262 lr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 262 LRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred eccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence 9987654444 22333 567899999998899999999999999988543221 011 22346999
Q ss_pred EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC-CCCC--CCccEE-EecCCC--CeeEEEEc-CCCCCEEEEEeCCCcEE
Q 010769 358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP-DSTS--QQSSFT-LHAHDK--AVCTISYN-PLVPNLLATGSTDKMVK 430 (502)
Q Consensus 358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~--~~~~~~-~~~h~~--~v~~l~~s-p~~~~~l~t~s~dg~i~ 430 (502)
++|+.++. -++++..|-.|++|.-..+.... .+.. ...+.. +.+|.. .|-++-|- |.. .++++||.-|.|.
T Consensus 342 l~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIF 419 (559)
T KOG1334|consen 342 LVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIF 419 (559)
T ss_pred EEecCCcc-ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEE
Confidence 99997665 57778888899999544332210 0000 011222 566753 46666554 544 8999999999999
Q ss_pred EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
||+-.+++.+... .+...-|+|+.-+|--+ +||++|-|..|+||-..+.+.
T Consensus 420 iW~K~t~eii~~M--egDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 420 IWDKKTGEIIRFM--EGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred EEecchhHHHHHh--hcccceEeccCCCCCCc-hhhccCCccceeeecCCcccc
Confidence 9999998844433 34344899999999999 799999999999999865543
No 196
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=2.2e-17 Score=153.09 Aligned_cols=226 Identities=16% Similarity=0.238 Sum_probs=182.0
Q ss_pred CCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769 204 KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 204 ~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
.++.+|.+|+.|+..|.|..+|..+......+ .-...|.++.|..+ .+++|
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei----------------------------~v~Etv~Dv~~LHn-eq~~A 186 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI----------------------------NVMETVRDVTFLHN-EQFFA 186 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeee----------------------------ehhhhhhhhhhhcc-hHHHH
Confidence 33789999999999999999998754332211 23467889999877 55666
Q ss_pred EEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC
Q 010769 284 SASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPH 363 (502)
Q Consensus 284 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 363 (502)
.+ ....+.||| ..|..++.++.| ..|..+.|-|.. .+|++++..|.++--|+.+++.+..+....+.+..++-+|.
T Consensus 187 VA-QK~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 187 VA-QKKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY 262 (545)
T ss_pred hh-hhceEEEec-CCCcEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc
Confidence 55 557899999 668888888754 568999999998 88999999999999999999988877777788899999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEE
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
+. ++-+|..+|+|.+|..... .++..+..|.++|++|++.+.| ++++|.+.|..|+|||+++... +.
T Consensus 263 Na-Vih~GhsnGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~q--l~ 329 (545)
T KOG1272|consen 263 NA-VIHLGHSNGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQ--LH 329 (545)
T ss_pred cc-eEEEcCCCceEEecCCCCc---------chHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccccc--cc
Confidence 65 7889999999999998875 7888889999999999999998 9999999999999999998762 32
Q ss_pred EecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
+... .-+...++||..| +||++ ....|.||.=
T Consensus 330 t~~t-p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQKG--LLALS-YGDHVQIWKD 361 (545)
T ss_pred eeec-CCCcccccccccc--ceeee-cCCeeeeehh
Confidence 3222 2356778898887 46654 4457999963
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.9e-15 Score=133.46 Aligned_cols=291 Identities=15% Similarity=0.250 Sum_probs=183.1
Q ss_pred ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCE-EEEecCCCcEEE
Q 010769 145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNF-MAVGSMEPAIEI 223 (502)
Q Consensus 145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~-la~g~~dg~I~i 223 (502)
..|+|+|++||+++.. ++-|... . .+..||-...-....-++| ..+.-+ |.+...++.|.+
T Consensus 14 c~fSp~g~yiAs~~~y----rlviRd~--~-----tlq~~qlf~cldki~yieW-------~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY----RLVIRDS--E-----TLQLHQLFLCLDKIVYIEW-------KADSCHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCCCeeeeeeee----EEEEecc--c-----hhhHHHHHHHHHHhhheee-------eccceeeeeeeeccceEEE
Confidence 5799999999999744 2333332 2 4444543221111234566 445544 455677889999
Q ss_pred eeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE
Q 010769 224 WDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 303 (502)
Q Consensus 224 wdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~ 303 (502)
|++...+ -..........+.+++|+|+|+++|.+...+-.|.||.+.+.+...
T Consensus 76 wsl~Qpe---------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 76 WSLVQPE---------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred EEeecce---------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 9996421 1112234567899999999999999999999999999999877644
Q ss_pred EeccCCCCeEEEEEcCCCCcEEEEEECC------------------------------------CcEEEEeCCCCCCccc
Q 010769 304 TLEHHTDKVQAVAWNHHSPQILLSGSFD------------------------------------RSVVMKDARISTHSGF 347 (502)
Q Consensus 304 ~~~~h~~~v~~l~~~~~~~~~l~s~~~d------------------------------------g~i~vwd~~~~~~~~~ 347 (502)
++.....+..++|+|+| ++.+..+.- ..+.+||.--.-.+ .
T Consensus 129 -~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-~ 205 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-Y 205 (447)
T ss_pred -ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee-e
Confidence 33344566888999998 666655431 12333332111110 1
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCC------------------------------------CCCC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKS------------------------------------DPDS 391 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------------------------------------~~~~ 391 (502)
.....-.+..+.|+|.+. ++++|+.|+.+++.+--+.+. ....
T Consensus 206 aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~ 284 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL 284 (447)
T ss_pred eeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcc
Confidence 223345688899999755 899999999988765433221 0000
Q ss_pred ---------------------CCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCC
Q 010769 392 ---------------------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWDLSNNQPSCIASRNPK 448 (502)
Q Consensus 392 ---------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~ 448 (502)
...++...+......+.-++|+++. .+++|-.. -+.+-+||++..+. ...--.
T Consensus 285 ~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l---~avLiQ 360 (447)
T KOG4497|consen 285 EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL---HAVLIQ 360 (447)
T ss_pred ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh---hhhhhh
Confidence 0000011111123457778999987 77777543 35699999998773 222234
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
..+|....|+|..+. |+.+.....+++|-......+....
T Consensus 361 k~piraf~WdP~~pr-L~vctg~srLY~W~psg~~~V~vP~ 400 (447)
T KOG4497|consen 361 KHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGPRVVGVPK 400 (447)
T ss_pred ccceeEEEeCCCCce-EEEEcCCceEEEEcCCCceEEecCC
Confidence 467999999999985 5555666689999987765554433
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=2.3e-17 Score=162.77 Aligned_cols=225 Identities=17% Similarity=0.287 Sum_probs=172.7
Q ss_pred ccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 010769 257 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 336 (502)
Q Consensus 257 ~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 336 (502)
+....+.+|..+|.|+.|... +.++++|+.|..|+||.+.++.++.+..+|.+.|+.++.+..+ .++++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEE
Confidence 344566799999999999999 5699999999999999999999999999999999999999887 88999999999999
Q ss_pred EeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC-----CCCCccEEEe----------
Q 010769 337 KDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-----TSQQSSFTLH---------- 401 (502)
Q Consensus 337 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~---------- 401 (502)
|.++.+..+..+.+|.+.|++++|+|. .+++.||++++||.+-......+ .....+..+.
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 999999999999999999999999994 37788999999999822111000 0000000000
Q ss_pred ------cCCCCeeEEEEcCC----------CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEE
Q 010769 402 ------AHDKAVCTISYNPL----------VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL 465 (502)
Q Consensus 402 ------~h~~~v~~l~~sp~----------~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll 465 (502)
+.....-+++|... ...+.+++-.+..+++|++.++. ......+|...+..+.++|-.+.+.
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcHhh
Confidence 00001111222221 11334444455668889988887 4666778889999999999988778
Q ss_pred EEEeCCCcEEEEECCCCcccccccc
Q 010769 466 AIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 466 asg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
.++|.||...|||+-.+..++..+.
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~ 436 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFI 436 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeec
Confidence 8999999999999999998877763
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=5.5e-16 Score=149.63 Aligned_cols=230 Identities=19% Similarity=0.303 Sum_probs=166.1
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
++|-|+|..|+.+.. ..+.|||.+.+..++ .+++|.+.|.|++|+.+ +..+
T Consensus 18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llq---------------------------tLKgHKDtVycVAys~d-GkrF 68 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---------------------------PLKGHKDTVYCVAYAKD-GKRF 68 (1081)
T ss_pred eEECCCCceEEEecC-CEEEEEeCCCccccc---------------------------ccccccceEEEEEEccC-Ccee
Confidence 344789888877754 578899998755544 45689999999999999 5699
Q ss_pred EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
|||+.|..|.+|...-.- +..+ .|++.|+|+.|+|-. +.|++++.+ -.-+|........ .......+.+++|..
T Consensus 69 ASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTN 142 (1081)
T ss_pred ccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeecC
Confidence 999999999999854322 2233 499999999999998 788888754 3567766543322 344556789999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC----CEEEEEeCCCcEEEEECCCCC
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP----NLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~----~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+|. +++.|..+|+|.+-+..... ...+....+...+|.+++|+|..+ ..+++.....++.+|.+....
T Consensus 143 DGq-ylalG~~nGTIsiRNk~gEe-------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 143 DGQ-YLALGMFNGTISIRNKNGEE-------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred CCc-EEEEeccCceEEeecCCCCc-------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence 876 89999999999987543321 122233345678999999999642 467777778888888776432
Q ss_pred eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
+-.-..-.-...|+++.++|.| +..||.++.+++|--
T Consensus 215 ---Igk~r~L~FdP~CisYf~NGEy-~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 215 ---IGKDRALNFDPCCISYFTNGEY-ILLGGSDKQLSLFTR 251 (1081)
T ss_pred ---ecccccCCCCchhheeccCCcE-EEEccCCCceEEEee
Confidence 2211112223568999999998 566888999988853
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.2e-15 Score=133.50 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=162.9
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
++.-..+|+++.|-.|+||+-.. .+.. .........|+||+|-|.+...|+.|
T Consensus 107 hqH~~~fava~nddvVriy~kss-t~pt--------------------------~Lks~sQrnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 107 HQHIIAFAVATNDDVVRIYDKSS-TCPT--------------------------KLKSVSQRNVTCLAWRPLSASELAVG 159 (445)
T ss_pred chhhhhhhhhccCcEEEEeccCC-CCCc--------------------------eecchhhcceeEEEeccCCcceeeee
Confidence 55566688999999999998653 1110 01112346799999999988889888
Q ss_pred ecCCcEEEEECCCC----ee----------eEEeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCCCCccceEe
Q 010769 286 SADKQVKIWDVAAG----KC----------NLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGFKWA 350 (502)
Q Consensus 286 s~Dg~v~vwd~~~~----~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 350 (502)
+.. -|++|..... +. +....+| .+|++++|+++| ..+++++. +..|.|||..++......+.
T Consensus 160 Cr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 160 CRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred ecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccccc
Confidence 885 4999986421 11 1122344 689999999999 66666654 67899999999988776667
Q ss_pred ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430 (502)
Q Consensus 351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~ 430 (502)
..+.+.-+.|+|++. .|++++-|+..++|..... ... .......+.|...+|+|.|..+|++++..-.++
T Consensus 237 glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~--------wt~-erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQS--------WTK-ERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CCCceeeEEEcCCCC-EEEEecccceeeeehhccc--------cee-cceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 778899999999987 7888888999999965443 111 122223458999999999977777777655444
Q ss_pred EEECCCCCe-----------eEEEEe-----c----CCCCCEEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCC
Q 010769 431 LWDLSNNQP-----------SCIASR-----N----PKAGAVFSVAFSEDSPFVLAIGGSK--------GKLEIWDTLSD 482 (502)
Q Consensus 431 vwd~~~~~~-----------~~~~~~-----~----~~~~~v~~~~~spd~~~llasg~~d--------g~i~vwd~~~~ 482 (502)
-..+....+ ..+..+ . .-.+.+.+++|.|.|.| ||+.-.. +.|.+||.+..
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhccccc
Confidence 332222110 011111 1 12467889999999997 5554332 23667887765
Q ss_pred cccccc
Q 010769 483 AGISNR 488 (502)
Q Consensus 483 ~~~~~~ 488 (502)
..+.-.
T Consensus 386 p~vels 391 (445)
T KOG2139|consen 386 PPVELS 391 (445)
T ss_pred CceEEE
Confidence 554433
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.5e-14 Score=126.96 Aligned_cols=306 Identities=17% Similarity=0.209 Sum_probs=189.8
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg 219 (502)
-.+.-++|+|.-.-++++..++ .|.+|+........|..- ...-..|++|-+. .+.-|++|+. +
T Consensus 99 ~dlr~~aWhqH~~~fava~ndd-----vVriy~ksst~pt~Lks~----sQrnvtclawRPl------saselavgCr-~ 162 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDD-----VVRIYDKSSTCPTKLKSV----SQRNVTCLAWRPL------SASELAVGCR-A 162 (445)
T ss_pred cceeeEeechhhhhhhhhccCc-----EEEEeccCCCCCceecch----hhcceeEEEeccC------Ccceeeeeec-c
Confidence 3567789999888888888887 666666655322222211 2233479999633 4668888887 4
Q ss_pred cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec-CCcEEEEECCC
Q 010769 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA-DKQVKIWDVAA 298 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~-Dg~v~vwd~~~ 298 (502)
-|.||..+..-....... +. ...........+| ..|++|+|++++ ..|++++. |..|.|||..+
T Consensus 163 gIciW~~s~tln~~r~~~-~~------------s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdt 227 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIR-MM------------STHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDT 227 (445)
T ss_pred eeEEEEcCcccccccccc-cc------------cccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCC
Confidence 578999864322211000 00 0111222334466 889999999995 57777765 67899999999
Q ss_pred CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 378 (502)
+.++......-+.++-+.|+|++ .+|++++.|+..++|..........-....+.|...+|+|.|..++++++..-.|+
T Consensus 228 g~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 228 GQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred CCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 98776654456789999999999 88999999999999966543322222234558999999999998888877666555
Q ss_pred EEECCCCCCCCC-CCCC---CccEEE-----ec----CCCCeeEEEEcCCCCCEEEEEeCCC--------cEEEEECCCC
Q 010769 379 GFDIRTAKSDPD-STSQ---QSSFTL-----HA----HDKAVCTISYNPLVPNLLATGSTDK--------MVKLWDLSNN 437 (502)
Q Consensus 379 i~d~~~~~~~~~-~~~~---~~~~~~-----~~----h~~~v~~l~~sp~~~~~l~t~s~dg--------~i~vwd~~~~ 437 (502)
-........... +... .++..+ .+ ..+++.+++|.|.| .+||+.-..+ .|.+||.+..
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 443332211110 0000 001111 11 14678999999999 7777755433 3677887765
Q ss_pred CeeEEEE--ecCCCCCEEEEEEcC---CCCcEEEEEeCCCcEEEEECC
Q 010769 438 QPSCIAS--RNPKAGAVFSVAFSE---DSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 438 ~~~~~~~--~~~~~~~v~~~~~sp---d~~~llasg~~dg~i~vwd~~ 480 (502)
.+..... ..... ...-++|+| +++ +|..+=+.|.+.-|.+.
T Consensus 386 p~vels~cg~i~ge-~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 386 PPVELSYCGMIGGE-YPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CceEEEecccccCC-CCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence 4322221 11111 123345544 456 67777788888888763
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.8e-14 Score=126.93 Aligned_cols=180 Identities=19% Similarity=0.340 Sum_probs=136.6
Q ss_pred CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CCCccceEee--cCCeEEEEeCCCCC
Q 010769 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-STHSGFKWAV--AADVESLAWDPHAE 365 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~--~~~v~~v~~~p~~~ 365 (502)
..|.|||=...+++.++. ...+|.++.+.++- +++. ..+.|.||.... .+........ +..+.+ ..|...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~--~~~~~~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCS--LCPTSN 147 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEe--ecCCCC
Confidence 479999977778888886 57899999998853 4444 467899999873 3333222221 223333 344333
Q ss_pred CEEEE--EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc-EEEEECCCCCeeEE
Q 010769 366 HSFVV--SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM-VKLWDLSNNQPSCI 442 (502)
Q Consensus 366 ~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~-i~vwd~~~~~~~~~ 442 (502)
..+++ |..-|.|++-|+..... .+...+.+|.+.|.|++++.+| .++||+|..|+ |||||..++.+...
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence 33333 56779999999987631 2467889999999999999998 99999999998 89999999997666
Q ss_pred EEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 443 ASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
.........|.+++|||+..+ ||+++..|+|+|+.++....
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred eecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCCC
Confidence 666666778999999999995 99999999999999987553
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=3.4e-15 Score=141.13 Aligned_cols=232 Identities=13% Similarity=0.143 Sum_probs=159.9
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 220 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~ 220 (502)
.+....++-.|..|+..-.+. |-+|.|.........+ ....-...-|.|-.+.... -.+.+--|++|-.-|.
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~----lyv~~~~g~~~~~~pi--~k~~y~gt~P~cHdfn~~~--a~~~g~dllIGf~tGq 196 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRE----LYVYSYRGAADLSKPI--DKREYKGTSPTCHDFNSFT--ATPKGLDLLIGFTTGQ 196 (636)
T ss_pred ceeeccccCCCCEEEEecCCe----EEEEEccCcchhccch--hhhcccCCCCceecccccc--cCCCCcceEEeeccCc
Confidence 345566666677776665442 4555555323211111 1111112234555443221 1466778888888899
Q ss_pred EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-
Q 010769 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG- 299 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~- 299 (502)
|.+.+... .+.. +.......-....|+|+.|-|....+++.+-.+|.+.+||....
T Consensus 197 vq~idp~~----~~~s-------------------klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~ 253 (636)
T KOG2394|consen 197 VQLIDPIN----FEVS-------------------KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC 253 (636)
T ss_pred eEEecchh----hHHH-------------------HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc
Confidence 98887642 1000 00000011234789999999988889999999999999975310
Q ss_pred ---------------------------eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769 300 ---------------------------KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 300 ---------------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 352 (502)
.++..+....+.|...+|+|+| .+|++.+.||.++|||..+..........-
T Consensus 254 ~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF 332 (636)
T KOG2394|consen 254 GATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYF 332 (636)
T ss_pred cCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhc
Confidence 1111122234578899999998 999999999999999999887776666677
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
+...||+|+|++. ++++|++|..|.+|.+... +.+..-++|.++|+.++|.|
T Consensus 333 GGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 333 GGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEcCCcc-EEEecCCcceEEEEEeccc---------eEEEeccccccceeeEeecc
Confidence 8899999999987 8999999999999999876 78888899999999999997
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.9e-16 Score=146.42 Aligned_cols=221 Identities=19% Similarity=0.296 Sum_probs=162.0
Q ss_pred ceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccc
Q 010769 180 NLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIK 259 (502)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 259 (502)
.|.+|...+ .|++| +.+|.+||+|+.|-.+.|||.-.. +...
T Consensus 45 eL~GH~GCV-----N~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~--------------------------Kllh 86 (758)
T KOG1310|consen 45 ELTGHTGCV-----NCLEW-------NADGELLASGSDDTRLIVWDPFEY--------------------------KLLH 86 (758)
T ss_pred hhcccccee-----cceee-------cCCCCEEeecCCcceEEeecchhc--------------------------ceee
Confidence 566666555 68999 789999999999999999998521 2223
Q ss_pred cccCCcccceeeEEecCCC-CcEEEEEecCCcEEEEECCCC----------eeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769 260 YKKGSHTDSVLGLAWNKEF-RNILASASADKQVKIWDVAAG----------KCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 260 ~~~~~h~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
..-.+|...|.++.|-|.. ..+++||+.|..|+|+|+... ...+.+..|...|..|+..|.+++.+.++
T Consensus 87 sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa 166 (758)
T KOG1310|consen 87 SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA 166 (758)
T ss_pred eeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence 3445899999999999863 348899999999999999842 34455677999999999999999999999
Q ss_pred ECCCcEEEEeCCCCCCccceE----------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC------CC
Q 010769 329 SFDRSVVMKDARISTHSGFKW----------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD------ST 392 (502)
Q Consensus 329 ~~dg~i~vwd~~~~~~~~~~~----------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~ 392 (502)
+.||+|+-+|+|.+....... ..--...|+..+|..+++|++|+.+-..++||.|....... ..
T Consensus 167 sEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~ 246 (758)
T KOG1310|consen 167 SEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTC 246 (758)
T ss_pred cCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCC
Confidence 999999999999754322111 11134678999999999999999999999999654322110 00
Q ss_pred ---CCCccEEE-ecCC-----------CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 393 ---SQQSSFTL-HAHD-----------KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 393 ---~~~~~~~~-~~h~-----------~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
.-.++..+ .+|- ..++-+.|+|+|..+|++-+.+ .|+++|+...+.
T Consensus 247 pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 247 PPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred CCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence 00112222 2222 1256688999996777766654 699999998774
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=2.2e-16 Score=146.54 Aligned_cols=279 Identities=18% Similarity=0.156 Sum_probs=204.5
Q ss_pred ccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769 143 EDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIE 222 (502)
Q Consensus 143 ~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~ 222 (502)
..+.+..+|+.|+.|+..| +|-...|.... | |..+.+-.-...+.|+ .+.+|+|++- ...+.
T Consensus 133 Y~~~ytrnGrhlllgGrKG---HlAa~Dw~t~~-----L--~~Ei~v~Etv~Dv~~L-------Hneq~~AVAQ-K~y~y 194 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKG---HLAAFDWVTKK-----L--HFEINVMETVRDVTFL-------HNEQFFAVAQ-KKYVY 194 (545)
T ss_pred eeeeecCCccEEEecCCcc---ceeeeecccce-----e--eeeeehhhhhhhhhhh-------cchHHHHhhh-hceEE
Confidence 5577889999999998887 45555554332 2 2222233333445554 5688888885 57899
Q ss_pred EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeee
Q 010769 223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCN 302 (502)
Q Consensus 223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~ 302 (502)
|||-.. ...+.+..| ..|..|.|.|. -.+|++++..|.++.-|+.+|+.+
T Consensus 195 vYD~~G----------------------------tElHClk~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklV 244 (545)
T KOG1272|consen 195 VYDNNG----------------------------TELHCLKRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLV 244 (545)
T ss_pred EecCCC----------------------------cEEeehhhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhh
Confidence 998642 222233333 67899999998 568999999999999999999999
Q ss_pred EEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEEC
Q 010769 303 LTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382 (502)
Q Consensus 303 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~ 382 (502)
..+..-.+.+..++-+|-+ .++-+|..+|+|.+|...+.........|.++|.++++.+.|. ++++++.|..++|||+
T Consensus 245 a~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 245 ASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeee
Confidence 9998888999999999998 7899999999999999999988888889999999999999765 8999999999999999
Q ss_pred CCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEe--cCCCCCEEEEEEcC
Q 010769 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD-LSNNQPSCIASR--NPKAGAVFSVAFSE 459 (502)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~--~~~~~~v~~~~~sp 459 (502)
|+. ..+.+... ..+...+++|..| +++++....|.||. .-.+.+.+...+ ....++|..+.|+|
T Consensus 323 R~~---------~ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 323 RNF---------YQLHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred ccc---------cccceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 987 33444443 4567788888744 44455556799994 222111111111 12245899999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 460 DSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 460 d~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
-.. +|..|-..|.-.|.=..+|++.
T Consensus 390 ~ED-vLGIGH~~G~tsilVPGsGePN 414 (545)
T KOG1272|consen 390 YED-VLGIGHAGGITSILVPGSGEPN 414 (545)
T ss_pred HHH-eeeccccCCceeEeccCCCCCC
Confidence 876 6877777776555555555544
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=2.9e-15 Score=133.18 Aligned_cols=209 Identities=20% Similarity=0.290 Sum_probs=166.4
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 341 (502)
-..+|+|.+|+++ +..+|.+.....|.||..... +..++++.|...|++++|+|.. +.|++++.|...++|....
T Consensus 9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence 3478999999999 779999999999999988655 4788899999999999999999 8899999999999999854
Q ss_pred CC---CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769 342 ST---HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 342 ~~---~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
+. ....+..+...+++|.|+|.. +.|++|+....|.+|-+.....-. .....-..+.+.|+++.|+|++ -
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn-V 159 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN-V 159 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc-c
Confidence 32 344566889999999999975 589999999999999887542111 1111234467789999999987 8
Q ss_pred EEEEEeCCCcEEEEECCCC----C----------e--eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 419 LLATGSTDKMVKLWDLSNN----Q----------P--SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~----~----------~--~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
+|++|+.|+.++||..--. + | .++.......+.|..+.|+|+|. .|+-.+.|+.+.+=|....
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCC
Confidence 9999999999999974210 0 0 12333335568899999999999 6888999999999998766
Q ss_pred c
Q 010769 483 A 483 (502)
Q Consensus 483 ~ 483 (502)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 5
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=7.6e-14 Score=135.39 Aligned_cols=249 Identities=10% Similarity=0.104 Sum_probs=150.7
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC-C
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM-E 218 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~-d 218 (502)
.....+.++|++++|+++.... ..+.+|.++. .+ .+........+..|..+.+ +|++++|++++. +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~-~g---~l~~~~~~~~~~~p~~i~~-------~~~g~~l~v~~~~~ 101 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPE--FRVLSYRIAD-DG---ALTFAAESPLPGSPTHIST-------DHQGRFLFSASYNA 101 (330)
T ss_pred CCCccEEECCCCCEEEEEECCC--CcEEEEEECC-CC---ceEEeeeecCCCCceEEEE-------CCCCCEEEEEEcCC
Confidence 4567789999999998876533 3455566642 22 2322222223333444433 899998888764 7
Q ss_pred CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~ 298 (502)
+.|.+|+++....... ..... .+.....+++++|+++.++++...++.|.+||+.+
T Consensus 102 ~~v~v~~~~~~g~~~~-----------------------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 102 NCVSVSPLDKDGIPVA-----------------------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CeEEEEEECCCCCCCC-----------------------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 8999999863211110 00001 12234677889999665556777789999999976
Q ss_pred CeeeE-------EeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCC--CCcc--ceEee------cCCeEEEEe
Q 010769 299 GKCNL-------TLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDARIS--THSG--FKWAV------AADVESLAW 360 (502)
Q Consensus 299 ~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~--~~~~--~~~~~------~~~v~~v~~ 360 (502)
...+. .+. .......+.|+|++ ++++++.. ++.|.+|++... .... ..... ......+.+
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 33221 111 12346789999999 66655554 999999999742 2111 01111 112335889
Q ss_pred CCCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEECC
Q 010769 361 DPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDLS 435 (502)
Q Consensus 361 ~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~~ 435 (502)
+|++. +++++ ..++.|.+|++...... ...+..... ......++++|++ ++|+++. .+++|.+|++.
T Consensus 236 ~pdg~-~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg-~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 236 TPDGR-HLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSG-KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCC-EEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCC-CEEEEEEccCCcEEEEEEc
Confidence 99877 55555 45789999999654100 011222222 1345678999998 5666555 48999999875
No 208
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.9e-14 Score=131.36 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=168.9
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe----eeEEeccCCCCeEEEEEcCCCCcEEEEEECC--CcEEEE
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK----CNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMK 337 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vw 337 (502)
..+.+|..++.... .|++|-.+|.+.+|....+. .+..+..+ ..+..|.-++..+.++++|+.. ..+.+|
T Consensus 103 l~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 103 LGTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred cccccccchhhcCC---EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 34566777766533 78889999999999988442 23333332 5677777788887888889999 889999
Q ss_pred eCCCCCCccce---------EeecCCeEEEEeCCC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769 338 DARISTHSGFK---------WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 338 d~~~~~~~~~~---------~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
|+.+.+.+-.. ...+-.++.+.|-+. ..+.|++++.-+.|++||.+.+ .+|+..+.....++
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPI 250 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcc
Confidence 99876322110 122345678888774 1458999999999999999987 58999999889999
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+++...|.+ +++++|..-+.+..||++.++. ....+.+..|.|+++..+|.++ +||++|-|..|||+|+.+.+++..
T Consensus 251 s~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 251 SSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred eeeeecCCC-cEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhh
Confidence 999999998 9999999999999999999873 3445788899999999999999 599999999999999999888776
Q ss_pred ccc
Q 010769 488 RFS 490 (502)
Q Consensus 488 ~~~ 490 (502)
.|-
T Consensus 328 vYv 330 (412)
T KOG3881|consen 328 VYV 330 (412)
T ss_pred hhh
Confidence 653
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.5e-15 Score=140.84 Aligned_cols=183 Identities=16% Similarity=0.243 Sum_probs=145.8
Q ss_pred CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769 279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 358 (502)
...|+.++.||.+.+.+ +.++.-+.+..|.+.+.+-.|+|+| .-|++++.||.|++|.-. +-...........|.|+
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEE
Confidence 34788899999999987 6678888889999999999999999 889999999999999854 33333344567789999
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+|.|++.+.+++.+ +.+.+=.+... ..+....+|.+-|.++.|++.. .++++|+.|-..+|||-...
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n---------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~- 218 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAAN---------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA- 218 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccc---------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc-
Confidence 99999887777654 55666555543 5567788999999999999987 99999999999999997654
Q ss_pred eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 439 PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
.++....|..+|++++|.|+. +++.++.+ ++++=..+.|
T Consensus 219 --~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R~~~p~~G 257 (737)
T KOG1524|consen 219 --NLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TARFSSPRVG 257 (737)
T ss_pred --ccccCChhccceeeeeecccc--ceeeeeee-eeeecCCCcc
Confidence 367778899999999999994 46666543 5664333333
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.9e-14 Score=144.19 Aligned_cols=209 Identities=16% Similarity=0.111 Sum_probs=136.4
Q ss_pred CCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769 205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
|||+|+.||.++.+ ..|++||+.++... ....+.+| ...++|+|++..+
T Consensus 211 wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------------------------~l~~~~g~---~~~~~wSPDG~~L 262 (429)
T PRK01742 211 WSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------------------------VVASFRGH---NGAPAFSPDGSRL 262 (429)
T ss_pred EcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------------------------EEecCCCc---cCceeECCCCCEE
Confidence 38999999987654 47999998653210 11112233 3468999996544
Q ss_pred EEEEecCCcEEEE--ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEE
Q 010769 282 LASASADKQVKIW--DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359 (502)
Q Consensus 282 l~sgs~Dg~v~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~ 359 (502)
+++.+.+|.+.|| |+.+++. ..+..+...+.+..|+|++..+++++..+|...||++...........+.. .+..
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~ 339 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQ 339 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCcc
Confidence 4445578876655 6665553 456667777889999999944555555678889988764332222222222 4578
Q ss_pred eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CC
Q 010769 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NN 437 (502)
Q Consensus 360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~ 437 (502)
|+|++. .++..+.++ +.+||+.++. .. .+..+ ....++.|+|++ .+|+.++.++.+.+|.+. ++
T Consensus 340 ~SpDG~-~ia~~~~~~-i~~~Dl~~g~---------~~-~lt~~-~~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 340 ISADGK-TLVMINGDN-VVKQDLTSGS---------TE-VLSST-FLDESPSISPNG-IMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred CCCCCC-EEEEEcCCC-EEEEECCCCC---------eE-EecCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECCC
Confidence 999987 555555554 5669998762 11 11111 123567899998 888888889988888763 34
Q ss_pred CeeEEEEecCCCCCEEEEEEcCC
Q 010769 438 QPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~spd 460 (502)
+ ....+..|.+.+...+|+|-
T Consensus 406 ~--~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 R--FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred C--ceEEccCCCCCCCCcccCCC
Confidence 3 45666677788899999985
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.4e-14 Score=143.35 Aligned_cols=204 Identities=14% Similarity=0.148 Sum_probs=135.5
Q ss_pred CCcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 010769 263 GSHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 337 (502)
..|...+.+.+|+|++. .|+.++.+ ..|++||+.+++. +..+.+| ...++|+|+|..++++.+.+|.+.||
T Consensus 200 t~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred ccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEE
Confidence 35777899999999954 66666543 3699999988753 3334433 44689999994444445578876665
Q ss_pred --eCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769 338 --DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 338 --d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
|+.++.... ...+...+....|+|++..+++++..+|..++|++.... .....+ .+.. ..+.|+|+
T Consensus 276 ~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~SpD 343 (429)
T PRK01742 276 VMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--------GGASLV-GGRG--YSAQISAD 343 (429)
T ss_pred EEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCeEEe-cCCC--CCccCCCC
Confidence 555544322 334455678899999988666666678888899876531 112222 3333 45789999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC--CCccccccc
Q 010769 416 VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL--SDAGISNRF 489 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~--~~~~~~~~~ 489 (502)
+ +.|+.++.++ +.+||+.+++...+. ... ...++.|+|+|++ |+.++.++.+.+|.+. ++..++++.
T Consensus 344 G-~~ia~~~~~~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 344 G-KTLVMINGDN-VVKQDLTSGSTEVLS--STF--LDESPSISPNGIM-IIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred C-CEEEEEcCCC-EEEEECCCCCeEEec--CCC--CCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCceEEcc
Confidence 8 7777777655 666999888743222 111 2356789999995 7777788888888763 455555543
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.5e-14 Score=135.39 Aligned_cols=286 Identities=15% Similarity=0.181 Sum_probs=191.6
Q ss_pred CCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 136 DEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
-++...-+.+.++|+|++|++.+... -.+++|.+..-.. .+-.|-+ +-+..+.-+ +.+-..++.-
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YK--P~ikvydlanLSL---KFERhlD----ae~V~feiL------sDD~SK~v~L 112 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYK--PQIKVYDLANLSL---KFERHLD----AEVVDFEIL------SDDYSKSVFL 112 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccC--CceEEEEccccee---eeeeccc----ccceeEEEe------ccchhhheEe
Confidence 35667788999999999998887665 3567776664332 2223333 222333322 4444445555
Q ss_pred cCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEE
Q 010769 216 SMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWD 295 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd 295 (502)
..|.+|.+..-.. ...... -...-..++++.-.. =|++++....|.-++
T Consensus 113 ~~DR~IefHak~G-------------------------~hy~~R-----IP~~GRDm~y~~~sc-Dly~~gsg~evYRlN 161 (703)
T KOG2321|consen 113 QNDRTIEFHAKYG-------------------------RHYRTR-----IPKFGRDMKYHKPSC-DLYLVGSGSEVYRLN 161 (703)
T ss_pred ecCceeeehhhcC-------------------------eeeeee-----cCcCCccccccCCCc-cEEEeecCcceEEEE
Confidence 5677776653211 000000 112223445544323 244555556799999
Q ss_pred CCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE------eec-----CCeEEEEeCCCC
Q 010769 296 VAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW------AVA-----ADVESLAWDPHA 364 (502)
Q Consensus 296 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~-----~~v~~v~~~p~~ 364 (502)
+..|+.+..|....+.++++..++.. .+|++|+.+|.|-+||.|......... .+. ..|+++.|+-+|
T Consensus 162 LEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g 240 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG 240 (703)
T ss_pred ccccccccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc
Confidence 99999999998888999999999988 899999999999999999876544222 122 239999999864
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
..+++|+..|.|.|||+|+. ...+..-+...-+|..+.|.+.+..--+.......++|||-.++++ ...
T Consensus 241 -L~~aVGts~G~v~iyDLRa~--------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~--~as 309 (703)
T KOG2321|consen 241 -LHVAVGTSTGSVLIYDLRAS--------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP--MAS 309 (703)
T ss_pred -eeEEeeccCCcEEEEEcccC--------CceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc--eee
Confidence 57999999999999999987 2333444555678999999886433333334456799999999985 333
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
... ...+..+++-|++. ++.++..++.+..|=+..
T Consensus 310 iEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 310 IEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccc
Confidence 332 34588999999987 688888888777665544
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=3.5e-14 Score=146.23 Aligned_cols=312 Identities=13% Similarity=0.169 Sum_probs=193.1
Q ss_pred CCCccccccccccCCC-ceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccc-cCCCcceeeeecCCCCCCCCCCEEE
Q 010769 136 DEDSEDLEDMTINPND-AVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 136 ~~~~~~v~~~~~~p~~-~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~s~~~~~la 213 (502)
.+|...|..++.++.. .++++|+.+| +++||......+........-... ..+...|+.. -+.++.+|
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DG---tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-------~~~~~~~A 1114 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDG---TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-------CGNGDQFA 1114 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCc---eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-------ccCCCeEE
Confidence 3577788888888766 9999999887 789998876554211111111111 1122233333 25799999
Q ss_pred EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc-EEEEEecCCcEE
Q 010769 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN-ILASASADKQVK 292 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~sgs~Dg~v~ 292 (502)
+|+.||.|++..++........... ............|...+|....+. .|+.+..-+.|.
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~------------------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQ------------------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeee------------------eecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 9999999999999863211111100 001111112223344445443333 788888889999
Q ss_pred EEECCCCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE--eecCCeEEEEeCCCCC--C
Q 010769 293 IWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAE--H 366 (502)
Q Consensus 293 vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~--~ 366 (502)
.||++......+++ ...+.|++++.+|.+ +.+++|+..|.+.+||+|-+..+. .| .+..+++.+..+|..+ .
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~-sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPIL-SWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceee-cccCcccCCcceEEeeccCCCCc
Confidence 99998876655553 235789999999999 899999999999999999766543 34 3456778887776543 3
Q ss_pred EEEE-Ee-CCCeEEEEECCCCCCCCCCCCC--Ccc--EEEe------cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 367 SFVV-SL-EDGTIKGFDIRTAKSDPDSTSQ--QSS--FTLH------AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 367 ~l~~-~~-~dg~i~i~d~~~~~~~~~~~~~--~~~--~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
..++ |. ..+.|.+|++.++......... .+. +... .+.-......+. .+..++++|+.|..|+.||.
T Consensus 1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCccceeeccC
Confidence 3443 44 5788999999987431110000 000 0000 111111222222 23479999999999999997
Q ss_pred CCCCee----------------------------------------------EE--------EEecCCCCCEEEEEEcCC
Q 010769 435 SNNQPS----------------------------------------------CI--------ASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 435 ~~~~~~----------------------------------------------~~--------~~~~~~~~~v~~~~~spd 460 (502)
...... .. .....|..+|+.+++...
T Consensus 1334 ~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~ 1413 (1431)
T KOG1240|consen 1334 TRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKS 1413 (1431)
T ss_pred CCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhcc
Confidence 542100 00 001235667888888776
Q ss_pred CCcEEEEEeCCCcEEEEE
Q 010769 461 SPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 461 ~~~llasg~~dg~i~vwd 478 (502)
..-+|++++.+|.|+||.
T Consensus 1414 ~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1414 EQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CccEEEEecCCCeeeecC
Confidence 655799999999999994
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=9.1e-13 Score=119.66 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=164.1
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC-
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME- 218 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d- 218 (502)
..+..+.|+.+..+|..|+.+| .++|..+.-.. +.|... .+.. -++-+ | ...++|..+.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G----yk~~~~~~~~k-----~~~~~~--~~~~-IvEmL-----F--SSSLvaiV~~~q 66 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG----YKIFSCSPFEK-----CFSKDT--EGVS-IVEML-----F--SSSLVAIVSIKQ 66 (391)
T ss_pred cceeeeeeccceeEEEccCCCc----eeEEecCchHH-----hhcccC--CCeE-EEEee-----c--ccceeEEEecCC
Confidence 3456667889999999999886 57776654432 112111 1110 01111 1 34566655544
Q ss_pred -CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 219 -PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 219 -g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
+.+++.++.. .... ........|.++.++.+ .|+.+-.+ .|.|||++
T Consensus 67 pr~Lkv~~~Kk---------------------------~~~I-Ce~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~ 114 (391)
T KOG2110|consen 67 PRKLKVVHFKK---------------------------KTTI-CEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIK 114 (391)
T ss_pred CceEEEEEccc---------------------------CceE-EEEecCCceEEEEEccc---eEEEEEcc-cEEEEecc
Confidence 3467766632 1111 11124578999999876 46666654 49999999
Q ss_pred CCeeeEEecc---CCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769 298 AGKCNLTLEH---HTDKVQAVAWNHHSPQILLSG--SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 298 ~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 372 (502)
+.+.++++.. +...+.++.+++.+ .+++-- ...|.|.+||+.+-+.......|.+.+.+++|+++|. ++++++
T Consensus 115 ~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATAS 192 (391)
T KOG2110|consen 115 DMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATAS 192 (391)
T ss_pred cceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEec
Confidence 9999998853 44557777777766 555542 2368999999999888887889999999999999876 899999
Q ss_pred CCCe-EEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 373 EDGT-IKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 373 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
..|+ ||+|.+..+ ..++.+... ...|.+++|+|++ .+|++.|..++|++|.+..
T Consensus 193 eKGTVIRVf~v~~G---------~kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEG---------QKLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred cCceEEEEEEcCCc---------cEeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecc
Confidence 9996 799999887 556666533 3468999999998 8999999999999998864
No 215
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3e-13 Score=135.47 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=99.4
Q ss_pred CCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC--C--eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769 263 GSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G--KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 338 (502)
..|+..++|.+++|. +.++|+|..||.|.+|.--. . ...+.+.-|...|.++.|+++| .+|++|+..|.+.+|.
T Consensus 202 ~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 202 VHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEe
Confidence 357778999999999 66999999999999996432 1 2345567799999999999999 8999999999999999
Q ss_pred CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCC
Q 010769 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~ 384 (502)
+.+++ ...+.+..+.|..+.++|++. +.++...|+.|.+.....
T Consensus 280 ~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 280 LETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccc
Confidence 99988 555778899999999999876 677777899998887643
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=5e-15 Score=139.98 Aligned_cols=205 Identities=14% Similarity=0.184 Sum_probs=143.5
Q ss_pred ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEe
Q 010769 145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIW 224 (502)
Q Consensus 145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iw 224 (502)
..=.|.+--|++|..-+ .|+.++........|+.....+...-.+|+.|++- +...++++-.+|.+++|
T Consensus 179 ~~a~~~g~dllIGf~tG-----qvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg------~~~~Fl~a~~sGnlyly 247 (636)
T KOG2394|consen 179 FTATPKGLDLLIGFTTG-----QVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG------SDSLFLVAHASGNLYLY 247 (636)
T ss_pred cccCCCCcceEEeeccC-----ceEEecchhhHHHHhhhhcccccccceEEEEEEeC------CCceEEEEEecCceEEe
Confidence 33456777888888777 44444333222234455444445566799999843 56677777889999999
Q ss_pred eCCCCCCCCc-eeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE
Q 010769 225 DLDVIDEVQP-HVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL 303 (502)
Q Consensus 225 dl~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~ 303 (502)
|......... ....-.....-+.-..+.++...++..+.--.+.|+..+|+|+ +.+||+.|.||.+||+|..+.+.+.
T Consensus 248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHH
Confidence 8754322211 1110000000000011122222344444444569999999998 5699999999999999999988888
Q ss_pred EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 304 TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 304 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
.++..-+...|++|+|+| +++++|+.|-.|.||.+...+.+..-.+|.+.|..|+|.|
T Consensus 327 ~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 887778899999999999 9999999999999999999888887789999999999997
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=7e-15 Score=135.53 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=145.6
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|+.+|..|++|+.||++|||++.... .......|...|.+|.|+|+ +.+|++
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~---------------------------t~l~e~~~~~eV~DL~FS~d-gk~las 203 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSML---------------------------TILEEIAHHAEVKDLDFSPD-GKFLAS 203 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcch---------------------------hhhhhHhhcCccccceeCCC-CcEEEE
Confidence 37899999999999999999976432 22234468899999999999 669999
Q ss_pred EecCCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCC--Cc-EEEEE-ECCCcEEEEeCCCCCCc-----cceEeecC
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHS--PQ-ILLSG-SFDRSVVMKDARISTHS-----GFKWAVAA 353 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~--~~-~l~s~-~~dg~i~vwd~~~~~~~-----~~~~~~~~ 353 (502)
-+.| ..+||+++++.++..... -......+.|+.++ .. ++++. ..-+.|+.|++...... ........
T Consensus 204 ig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 204 IGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred ecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 9999 999999999977666542 23455667777654 12 33332 33466777776543321 11122345
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.|.+++.+++|. +++.|+.+|.|.+++.... ........+|...|+.+.|+|+. +++++.+.+..+.|..
T Consensus 283 siSsl~VS~dGk-f~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 283 SISSLAVSDDGK-FLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTK 352 (398)
T ss_pred cceeEEEcCCCc-EEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEE
Confidence 799999999876 8999999999999999876 34455567899999999999997 8999999999888887
Q ss_pred CCC
Q 010769 434 LSN 436 (502)
Q Consensus 434 ~~~ 436 (502)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 755
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=4.1e-14 Score=145.68 Aligned_cols=224 Identities=19% Similarity=0.270 Sum_probs=164.2
Q ss_pred cccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC-------eeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769 256 SSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG-------KCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 256 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
......+..|...|..++.++....+++|||.||+|++|+++.- +...++......+.++...+.+ ..++.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVS 1116 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEE
Confidence 45556677899999999999987689999999999999998631 2334444456789999999988 889999
Q ss_pred ECCCcEEEEeCCCCCCcc--ce------EeecCC-eEEEEeCCCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE
Q 010769 329 SFDRSVVMKDARISTHSG--FK------WAVAAD-VESLAWDPHAE-HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF 398 (502)
Q Consensus 329 ~~dg~i~vwd~~~~~~~~--~~------~~~~~~-v~~v~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 398 (502)
+.||.|++.++....... .. ....+. +..-+|..... ..++.++..+.|..||+++. ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~---------~~~w 1187 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR---------HDAW 1187 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh---------hhHH
Confidence 999999999987521111 00 011222 33334443333 37888999999999999987 3334
Q ss_pred EE--ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCC---CcEEEEEe-CCC
Q 010769 399 TL--HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS---PFVLAIGG-SKG 472 (502)
Q Consensus 399 ~~--~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~---~~llasg~-~dg 472 (502)
++ ....+.|++++.+|.+ .++++|+..|.+.+||++-+.+.+......+ .+|..+..+|-. .+.+++|. ..+
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCC
Confidence 33 3345789999999988 8999999999999999999987766666544 778888777643 34444444 567
Q ss_pred cEEEEECCCCccccccccC
Q 010769 473 KLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~ 491 (502)
.|.+|++.+|.+-......
T Consensus 1266 evs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred ceeeeecccCcceEEEEcC
Confidence 8999999999765554444
No 219
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=1.6e-14 Score=141.29 Aligned_cols=296 Identities=19% Similarity=0.291 Sum_probs=212.3
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d 218 (502)
+..+.++.++|.|+-+|.|+.. .+|+.+......+..+.||. .|-+.-.+.|.. +|...+-++.+..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~-----h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSP-----HPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--Ccchhcceeccc-----CCCCceeEEecCc
Confidence 4578999999999999999865 56677766666678888884 333444556632 2345566666666
Q ss_pred CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~ 298 (502)
..-.||++... ....+...+.+|+.+|+.+-|+|+.+.+|++++.|-.|..||+++
T Consensus 91 qkaiiwnlA~s------------------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 91 QKAIIWNLAKS------------------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred chhhhhhhhcC------------------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 66669998632 235566677899999999999999999999999999999999987
Q ss_pred C-eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-eEeecCCeEEEEeCCCCCCEEEEEeCCCe
Q 010769 299 G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAVAADVESLAWDPHAEHSFVVSLEDGT 376 (502)
Q Consensus 299 ~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~l~~~~~dg~ 376 (502)
. .++..+..-......++|+-..+. +++.+..+.|.+||+|.+..+.. ..++-..+..+.|+..-...+.+++.||+
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 6 455665555566778999988855 45556778899999998776543 33456667778887765557899999999
Q ss_pred EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC-cEEEEE---------CCCCCeeEEEEec
Q 010769 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK-MVKLWD---------LSNNQPSCIASRN 446 (502)
Q Consensus 377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg-~i~vwd---------~~~~~~~~~~~~~ 446 (502)
|++||..... ...........+|..-++.|.|..+++--...+ .+.+++ ..+. +..+..+.
T Consensus 226 vkfw~y~kSt--------~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~ 296 (1081)
T KOG0309|consen 226 VKFWDYSKST--------TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFV 296 (1081)
T ss_pred eeeecccccc--------cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC-Ccceeeec
Confidence 9999988652 222333345667777778887655544433222 333333 3322 34688999
Q ss_pred CCCCCEEEEEEcCC---------CCcEEEEEeCCCcEEEEECCC
Q 010769 447 PKAGAVFSVAFSED---------SPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 447 ~~~~~v~~~~~spd---------~~~llasg~~dg~i~vwd~~~ 481 (502)
+|...|..+.|-.. ..|-|+|-+.|..+++|-+.+
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 99998887777543 246799999999999999864
No 220
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=7.7e-12 Score=121.58 Aligned_cols=278 Identities=14% Similarity=0.168 Sum_probs=174.3
Q ss_pred ceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC----CCcEEEeeCCCCC-CCCceeee
Q 010769 164 SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM----EPAIEIWDLDVID-EVQPHVIL 238 (502)
Q Consensus 164 ~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~----dg~I~iwdl~~~~-~~~~~~~l 238 (502)
..|.++.++...+ .|...+......-|..+++ +|++++|.+... .|.|..|.+.... .+..
T Consensus 13 ~gI~~~~~d~~~g---~l~~~~~~~~~~~Ps~l~~-------~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~---- 78 (345)
T PF10282_consen 13 GGIYVFRFDEETG---TLTLVQTVAEGENPSWLAV-------SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL---- 78 (345)
T ss_dssp TEEEEEEEETTTT---EEEEEEEEEESSSECCEEE--------TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----
T ss_pred CcEEEEEEcCCCC---CceEeeeecCCCCCceEEE-------EeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----
Confidence 4677777776766 6665554444444444444 788999888766 4789999886421 1111
Q ss_pred CCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC-CeeeEE---ec--------
Q 010769 239 GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-GKCNLT---LE-------- 306 (502)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-~~~~~~---~~-------- 306 (502)
.............++++|+++.++++...+|+|.++++.. +..... +.
T Consensus 79 --------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 79 --------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp --------------------EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred --------------------eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 1111112345567999999654444445689999999986 433222 21
Q ss_pred --cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-cc----ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEE
Q 010769 307 --HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SG----FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379 (502)
Q Consensus 307 --~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 379 (502)
.......++.|+|++..++++.-....|.+|++..... .. .........+.++|+|++..++++.-.++.|.+
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 12356789999999944444444456899999977652 11 112345668999999998876777778899999
Q ss_pred EECCCCCCCCCCCCCCccEEEecC------CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC--CCCeeEEEEecCCCCC
Q 010769 380 FDIRTAKSDPDSTSQQSSFTLHAH------DKAVCTISYNPLVPNLLATGSTDKMVKLWDLS--NNQPSCIASRNPKAGA 451 (502)
Q Consensus 380 ~d~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~ 451 (502)
|++...... ...+..+... ......|+++|++..++++....++|.+|++. ++++..+.........
T Consensus 219 ~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 219 FDYDPSDGS-----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF 293 (345)
T ss_dssp EEEETTTTE-----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred EeecccCCc-----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence 998832110 1222222211 12578899999994444555567889999993 3555555555444455
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 452 v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
.+.++++|+|++|+++...++.|.+|++.
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 89999999999877777778899999874
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=4e-13 Score=118.56 Aligned_cols=156 Identities=14% Similarity=0.257 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcEEEEEEC---------CCcEEEEeCCCCCCccceE--eecCCeEEEEeCCCCCCEEEE-EeCCCeEEEE
Q 010769 313 QAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVV-SLEDGTIKGF 380 (502)
Q Consensus 313 ~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~-~~~dg~i~i~ 380 (502)
..+.|++.|..+++.... -+...+|-++......... ...++|..++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999655555541 2345666665444333233 334579999999998755444 4467899999
Q ss_pred ECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCeeEEEEecCCCCCEEEEEE
Q 010769 381 DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAF 457 (502)
Q Consensus 381 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 457 (502)
|++. ..+..+. ...+..+.|+|+| ++|++++. .|.|.+||+++.+ .+.... | ..++.++|
T Consensus 89 d~~~----------~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~~-~-~~~t~~~W 151 (194)
T PF08662_consen 89 DVKG----------KKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK--KISTFE-H-SDATDVEW 151 (194)
T ss_pred cCcc----------cEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE--Eeeccc-c-CcEEEEEE
Confidence 9972 4555553 5678899999998 88888764 4669999999766 343333 3 34789999
Q ss_pred cCCCCcEEEEEeC-----CCcEEEEECCCCcccc
Q 010769 458 SEDSPFVLAIGGS-----KGKLEIWDTLSDAGIS 486 (502)
Q Consensus 458 spd~~~llasg~~-----dg~i~vwd~~~~~~~~ 486 (502)
+|+|+|++++.+. |+.++||+.. |+.+.
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence 9999985555443 7889999995 55543
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3e-12 Score=128.02 Aligned_cols=206 Identities=11% Similarity=0.087 Sum_probs=130.1
Q ss_pred CcccceeeEEecCCCCcEEEEEe---cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769 264 SHTDSVLGLAWNKEFRNILASAS---ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs---~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd 338 (502)
.+...+.+.+|+|+|. .|+..+ ....|.+|++.+++.... ......+..+.|+|+|..++++.+.+| .|.+||
T Consensus 196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 3567899999999965 555443 235799999988854332 223334557899999954555555555 488899
Q ss_pred CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEE--ECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... .......+....|+|++..+++++...|...+| ++.++ ....+..+........|+|+|
T Consensus 274 ~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 274 LASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----------APQRITWEGSQNQDADVSSDG 342 (429)
T ss_pred CCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------CeEEeecCCCCccCEEECCCC
Confidence 98765433 233345678899999987555555555555555 55443 223344444556778999998
Q ss_pred CCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc---EEEEECCCCccccccc
Q 010769 417 PNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK---LEIWDTLSDAGISNRF 489 (502)
Q Consensus 417 ~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~---i~vwd~~~~~~~~~~~ 489 (502)
++|+..+. + ..|.+||+.++....+.. . .......|+|||++ |+.++.++. +.++++. +...+++.
T Consensus 343 -~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~--~--~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~l~ 414 (429)
T PRK03629 343 -KFMVMVSSNGGQQHIAKQDLATGGVQVLTD--T--FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKARLP 414 (429)
T ss_pred -CEEEEEEccCCCceEEEEECCCCCeEEeCC--C--CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEECc
Confidence 66655543 3 358889998887433321 1 22346789999996 555555543 6777773 44444443
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=8.6e-13 Score=118.60 Aligned_cols=296 Identities=16% Similarity=0.224 Sum_probs=180.5
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCC--Ccee---eeeccc--------cCCCcceeeeecCCCC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGD--PNLY---VHHHII--------IPAFPLCMAWLDCPLK 204 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~--~~l~---~~~~~~--------~~~~~~~~~w~~~~~~ 204 (502)
+.+-|.++.|..+|.+|++|...| +|-.|....... -+++ ..|+.. +......+.|+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgG-----RVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~---- 94 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGG-----RVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD---- 94 (433)
T ss_pred hhcceeeEEeecccceEeecCCCC-----eEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC----
Confidence 356789999999999999999887 665555433211 1122 122211 222345677753
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
..+...++..+.|.+|++|.+..... ++........+-...|++|..-. .
T Consensus 95 -~~n~a~FLlstNdktiKlWKi~er~~----------------------k~~~~~~~~~~~~~~~~~lr~p~-------~ 144 (433)
T KOG1354|consen 95 -DGNLAEFLLSTNDKTIKLWKIRERGS----------------------KKEGYNLPEEGPPGTITSLRLPV-------E 144 (433)
T ss_pred -CCCccEEEEecCCcceeeeeeecccc----------------------ccccccccccCCCCccceeecee-------e
Confidence 13466788888999999999863211 10111111112233344443211 1
Q ss_pred EecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--------ecCCe
Q 010769 285 ASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADV 355 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v 355 (502)
+..+-.+- -.+.+.+ .+|+..|.++.++.+. ..++++ .|=.|.+|++........... ...-|
T Consensus 145 ~~~~~~ve------a~prRv~aNaHtyhiNSIS~NsD~-Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVI 216 (433)
T KOG1354|consen 145 GRHDLEVE------ASPRRVYANAHTYHINSISVNSDK-ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVI 216 (433)
T ss_pred ccccceee------eeeeeeccccceeEeeeeeecCcc-ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHH
Confidence 11111110 1223333 4689999999999998 666665 477899999875543322221 22348
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCC-------CCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 356 ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDS-------TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 356 ~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
++..|+|..-+.|+-++..|+|++.|+|........ ..+....-+..--..|+.+.|++.| +++++-.. -+
T Consensus 217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-lt 294 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LT 294 (433)
T ss_pred hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ce
Confidence 899999988889999999999999999964221100 0001111112223578999999998 88887543 57
Q ss_pred EEEEECCC-CCeeEEEEecCCC------------CC---EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 429 VKLWDLSN-NQPSCIASRNPKA------------GA---VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 429 i~vwd~~~-~~~~~~~~~~~~~------------~~---v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
|++||+.. .+| +.+.+.|. .. -+.++|+.++.+ ++||+....++++++..|...
T Consensus 295 vk~wD~nme~~p--v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 295 VKLWDLNMEAKP--VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred eEEEeccccCCc--ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCcce
Confidence 99999954 343 33333332 12 357899999985 999999999999997665543
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.1e-12 Score=127.01 Aligned_cols=209 Identities=16% Similarity=0.056 Sum_probs=131.9
Q ss_pred CCCCCEEEEecC---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 206 REKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 206 s~~~~~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
||+|+.||..+. ...|.+|++..+... .... ....+..++|+|++..++
T Consensus 207 SPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------------------~l~~---~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 207 SPDGSKLAYVTFESGRSALVIQTLANGAVR-------------------------QVAS---FPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EccC---CCCCcCCeEECCCCCEEE
Confidence 899999987542 357899998653210 1111 122345689999966555
Q ss_pred EEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEE--eCCCCCCccceEeecCCeEE
Q 010769 283 ASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRSVVMK--DARISTHSGFKWAVAADVES 357 (502)
Q Consensus 283 ~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~v~~ 357 (502)
++.+.+| .|.+||+.+++... +..+...+....|+|++ +.|+.++ .++...+| ++.++.... ..........
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~ 335 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD 335 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence 5555555 48899998887654 43345567889999999 5554444 44554555 555543322 2223344567
Q ss_pred EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc---EEEE
Q 010769 358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM---VKLW 432 (502)
Q Consensus 358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~---i~vw 432 (502)
..|+|++..+++++..++ .|.+||+.++. ...+.. ........|+|+| .+|+.++.++. +.++
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLTD-TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEeCC-CCCCCCceECCCC-CEEEEEEcCCCceEEEEE
Confidence 899999885555554443 58888987652 222221 1234567899998 77777776654 6777
Q ss_pred ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769 433 DLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
++.... ...+..|.+.+...+|+|-
T Consensus 404 ~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 404 STDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred ECCCCC---eEECccCCCCcCCcccCCC
Confidence 875544 3445567778888999873
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.7e-12 Score=129.88 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=128.2
Q ss_pred CcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC-
Q 010769 264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA- 339 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~- 339 (502)
.+...+.+.+|+|++. .|+..+.. ..|.+||+.+++... +....+.+.+..|+|++..++++.+.+|...||.+
T Consensus 193 ~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4667899999999954 66655532 359999999887543 33334566789999999555567788887776654
Q ss_pred -CCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769 340 -RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 340 -~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
..+... ....+........|+|++..+++++...|...+|.+.... .....+..+.......+|+|+| +
T Consensus 271 ~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--------g~~~~lt~~g~~~~~~~~SpDG-~ 340 (427)
T PRK02889 271 ADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--------GAAQRVTFTGSYNTSPRISPDG-K 340 (427)
T ss_pred CCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--------CceEEEecCCCCcCceEECCCC-C
Confidence 333322 1223334456788999988666666556777777654321 1122222233344568899998 6
Q ss_pred EEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEEC
Q 010769 419 LLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDT 479 (502)
Q Consensus 419 ~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~ 479 (502)
+|+..+.++ .|.+||+.+++...+. .. .......|+|+|+++++++...|. +.+.++
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt---~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALT---DT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEcc---CC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 776665544 5999999888743322 11 234678999999976666655554 555555
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.2e-12 Score=129.70 Aligned_cols=203 Identities=12% Similarity=0.088 Sum_probs=135.7
Q ss_pred CcccceeeEEecCCCCcEEEEEec---CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEe
Q 010769 264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~---Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd 338 (502)
.|...+.+.+|+|++. .|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+|+|..++++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 5777899999999955 5655543 468999999888653 344566678889999999555667776665 67778
Q ss_pred CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ...+........|+|++..+++++..+| .|+++|+... ....+..+...+....|+|+|
T Consensus 277 ~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 277 LRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS----------NPRRISFGGGRYSTPVWSPRG 345 (435)
T ss_pred CCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC----------CeEEeecCCCcccCeEECCCC
Confidence 87765433 3334445677899999875555554444 5777787643 233444445567778999999
Q ss_pred CCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCcc
Q 010769 417 PNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDAG 484 (502)
Q Consensus 417 ~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~~ 484 (502)
+.|+..+.+ ..|.+|++..+.... .. ....+....|+|||++++.++... ..|+++++..+..
T Consensus 346 -~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 346 -DLIAFTKQGGGQFSIGVMKPDGSGERI-LT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred -CEEEEEEcCCCceEEEEEECCCCceEe-cc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 666655443 358888986654322 11 122467889999999755554433 2578888865543
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=1e-11 Score=120.66 Aligned_cols=253 Identities=13% Similarity=0.098 Sum_probs=158.1
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
++|+|+++.+++.||.|.++|+.+.+.+... . -.....+++++++|+.++++
T Consensus 44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---------------------------~-~G~~~~~i~~s~DG~~~~v~ 95 (369)
T PF02239_consen 44 FSPDGRYLYVANRDGTVSVIDLATGKVVATI---------------------------K-VGGNPRGIAVSPDGKYVYVA 95 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTSSSEEEEE---------------------------E--SSEEEEEEE--TTTEEEEE
T ss_pred ecCCCCEEEEEcCCCeEEEEECCcccEEEEE---------------------------e-cCCCcceEEEcCCCCEEEEE
Confidence 3899999999999999999999864432221 1 12346789999997655556
Q ss_pred EecCCcEEEEECCCCeeeEEeccC-------CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeE
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEHH-------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVE 356 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~ 356 (502)
+...+.+.++|..+.++++.+... ...+.++..+|..+.++++.-..+.|.+.|........ ..........
T Consensus 96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~ 175 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPH 175 (369)
T ss_dssp EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEE
T ss_pred ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccc
Confidence 678999999999999998887432 34678888888884455555556888888887664433 2334455678
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC----------------------------------------------CC
Q 010769 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD----------------------------------------------PD 390 (502)
Q Consensus 357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------------------------------~~ 390 (502)
...|+|++.+++++......|.++|..+.... ..
T Consensus 176 D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 176 DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred ccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 89999988766666666777888887665320 00
Q ss_pred CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE----eCCCcEEEEECCCCCeeEEEEecC-CCCCEEEEEEcCCCCcEE
Q 010769 391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATG----STDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVL 465 (502)
Q Consensus 391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~----s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~ll 465 (502)
....+.+..+.....+ .-+..+|++ .++.+. ...++|.++|..+.+ .+..+.. ....+..+.|+++|+++.
T Consensus 256 ~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp TTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred hhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEE
Confidence 0112233333333334 556779988 666666 445889999999885 3334322 223589999999999877
Q ss_pred EEEeCCC-cEEEEECCCCccccccc
Q 010769 466 AIGGSKG-KLEIWDTLSDAGISNRF 489 (502)
Q Consensus 466 asg~~dg-~i~vwd~~~~~~~~~~~ 489 (502)
++.-..+ .|.|||..+.+.+.++.
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEEEEE
Confidence 7776665 89999999999887765
No 228
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.55 E-value=3.2e-13 Score=117.14 Aligned_cols=159 Identities=22% Similarity=0.291 Sum_probs=126.3
Q ss_pred CcccceeeEEecCCC--CcEEEEEecCCcEEEEECCCCee----------eEEeccCCCCeEEEEEcCCCCcEEEEEECC
Q 010769 264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAGKC----------NLTLEHHTDKVQAVAWNHHSPQILLSGSFD 331 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~--~~~l~sgs~Dg~v~vwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 331 (502)
+..+.++|..|.-.. ..+|++|-.+|.|.+||+.++.. ......|..+|.++.|.+.- ..=++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCcc
Confidence 455778888864332 34677888999999999998733 33445689999999998765 455778888
Q ss_pred CcEEEEeCCCCC--Cc--cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769 332 RSVVMKDARIST--HS--GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 332 g~i~vwd~~~~~--~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
..+..|.+.-.. .. ....-....+..+...|+++ ++++++.|+.|++|..++. .++..+.-|...|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------~pLAVLkyHsagv 296 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGV 296 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------Cchhhhhhhhcce
Confidence 888999886432 11 11222345688899999876 9999999999999999997 8888999999999
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 408 CTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
++++|+|+. .++|++|.|++|.+|++
T Consensus 297 n~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCC-chhhhccCCceEEeeec
Confidence 999999986 89999999999999986
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.4e-12 Score=129.29 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=130.6
Q ss_pred CcccceeeEEecCCCCcEEEEEec---CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769 264 SHTDSVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~---Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd 338 (502)
.|...+.+.+|+|++. .|+.++. ...|.+|++.+++... +..+.+...+..|+|+|..++++.+.+| .|++||
T Consensus 201 ~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 4667899999999955 6666653 3469999998876533 3334455568899999955666666666 589999
Q ss_pred CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ...+.......+|+|++..+++++...|. |+++++.++ . ...+..+......++|+|+|
T Consensus 279 ~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~-~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 279 LGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S-AERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-eEEeecCCCCccCEEECCCC
Confidence 98766433 23333445678999998755555555555 666666544 1 22232333445578999998
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEEECCC
Q 010769 417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLS 481 (502)
Q Consensus 417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d--g~i~vwd~~~ 481 (502)
+.|+..+.++ .|.+||+.+++...+ . +........|+|+|++++++.... +.|.++++..
T Consensus 348 -~~Ia~~~~~~~~~~I~v~d~~~g~~~~L---t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 348 -KKIAMVHGSGGQYRIAVMDLSTGSVRTL---T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -CEEEEEECCCCceeEEEEECCCCCeEEC---C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 6666554332 599999988774322 2 222345679999999755555443 3577777744
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=6.8e-13 Score=121.26 Aligned_cols=214 Identities=13% Similarity=0.155 Sum_probs=159.5
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
...|++|..+|.+.+|....++.-. .+...+..+ ..+..|.-++...+++|+|+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hs-----------------------s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHS-----------------------SKLIKLATG-PGLYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCcccc-----------------------ccceeeecC-CceeeeccCCCCCceEecCchh
Confidence 4467778889999999987543211 011111122 5567777777777889999998
Q ss_pred --CcEEEEECCCCeeeEEeccC---------CCCeEEEEEcCC--CCcEEEEEECCCcEEEEeCCCCCCccceE-eecCC
Q 010769 289 --KQVKIWDVAAGKCNLTLEHH---------TDKVQAVAWNHH--SPQILLSGSFDRSVVMKDARISTHSGFKW-AVAAD 354 (502)
Q Consensus 289 --g~v~vwd~~~~~~~~~~~~h---------~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~ 354 (502)
..+++||+.+.+.+.+-+.- .-.++.+.|-+. . +.|++++.-+.+++||.+.++.+...+ -...+
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFDFLENP 249 (412)
T ss_pred cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEeccccCc
Confidence 88999999988665544321 124677888776 4 789999999999999999877665444 34678
Q ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
++++...|.+. ++++|..-|.+..||+|.+ ......+.+..+.|++|..+|.. .+|++||-|..|+|+|+
T Consensus 250 is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~--------kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 250 ISSTGLTPSGN-FIYTGNTKGQLAKFDLRGG--------KLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDI 319 (412)
T ss_pred ceeeeecCCCc-EEEEecccchhheecccCc--------eeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeec
Confidence 99999999765 8999999999999999987 23444588889999999999987 89999999999999999
Q ss_pred CCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769 435 SNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 435 ~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
.+.++...... ...++++-+.++
T Consensus 320 ktrkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 320 KTRKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred ccchhhhhhhh---hccccEEEecCC
Confidence 99663222222 244666666554
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.9e-12 Score=127.03 Aligned_cols=211 Identities=15% Similarity=0.096 Sum_probs=131.7
Q ss_pred CCCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769 203 LKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 203 ~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
+.|+|+|+.|+..+.. ..|.+|++..+... .+..+.....+++|+|++.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----------------------------LVASFRGINGAPSFSPDGR 260 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----------------------------EeccCCCCccCceECCCCC
Confidence 3448999999987643 46999998653210 0112233445789999976
Q ss_pred cEEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-CCCc--EEEEeCCCCCCccceEeecCC
Q 010769 280 NILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDRS--VVMKDARISTHSGFKWAVAAD 354 (502)
Q Consensus 280 ~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~ 354 (502)
.++++.+.+| .|.+||+.+++.. .+..+.......+|+|++ +.|+.++ .+|. |.++++.++...... .....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeEEee-cCCCC
Confidence 6666767666 5999999887653 455555566788999999 5555444 4555 666666655433222 22334
Q ss_pred eEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC---CCcE
Q 010769 355 VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DKMV 429 (502)
Q Consensus 355 v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg~i 429 (502)
....+|+|++..++++...++ .|.+||+.++. . ..+. +........|+|+| ++|+..+. .+.|
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~-~~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L 405 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---------V-RTLT-PGSLDESPSFAPNG-SMVLYATREGGRGVL 405 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---------e-EECC-CCCCCCCceECCCC-CEEEEEEecCCceEE
Confidence 557899999885444444333 58999987652 1 1222 33345567999998 65555444 2357
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcC
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp 459 (502)
.++++.... ...+..+.+.+...+|+|
T Consensus 406 ~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 788886543 233333456677778876
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=5.2e-14 Score=125.56 Aligned_cols=232 Identities=17% Similarity=0.247 Sum_probs=163.1
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILAS 284 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 284 (502)
|||+|+++|+.+.- .+.|-|..+.+..+-+. --+.|.-+.|..+...+|..
T Consensus 16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~----------------------------cldki~yieW~ads~~ilC~ 66 (447)
T KOG4497|consen 16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFL----------------------------CLDKIVYIEWKADSCHILCV 66 (447)
T ss_pred ECCCCCeeeeeeee-EEEEeccchhhHHHHHH----------------------------HHHHhhheeeeccceeeeee
Confidence 48999999999875 67787876543322111 13567888999887777888
Q ss_pred EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC
Q 010769 285 ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA 364 (502)
Q Consensus 285 gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~ 364 (502)
...++.|.+|++....-...+......+.+++|+|+|..+|.+...+-.|.+|.+.+....... -....+..++|+|++
T Consensus 67 ~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 67 AYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDG 145 (447)
T ss_pred eeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCC
Confidence 8999999999999998888898888999999999999889999999999999999987655422 234456889999998
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~ 444 (502)
. +.+..+.-.....+.+..-+ ....+..+...+-..+.+.|+|+| ..|| |||---.- .+..
T Consensus 146 ~-f~ai~sRrDCkdyv~i~~c~------~W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley--kv~a 206 (447)
T KOG4497|consen 146 Q-FCAILSRRDCKDYVQISSCK------AWILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY--KVYA 206 (447)
T ss_pred c-eeeeeecccHHHHHHHHhhH------HHHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--eeee
Confidence 7 44444432222222221100 023344555556678999999998 5554 56543222 1111
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 445 RNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 445 ~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
.. ..-.+..++|+|.++ +|+.|+.|+.+||-+--+.+.+.+
T Consensus 207 Ye-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 207 YE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred ee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhh
Confidence 11 123588899999999 599999999999988776665543
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=2.8e-13 Score=126.98 Aligned_cols=257 Identities=19% Similarity=0.231 Sum_probs=185.7
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-CcEEE
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-RNILA 283 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~ 283 (502)
|...|..|++|+.|..|.+||....... .....+|...|..-.|-|.. ...++
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------------------l~f~SGH~~NvfQaKFiP~s~d~ti~ 203 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGSPK--------------------------LSFESGHCNNVFQAKFIPFSGDRTIV 203 (559)
T ss_pred ecccCceeeccCccceEEeehhhccCcc--------------------------cccccccccchhhhhccCCCCCcCce
Confidence 3678999999999999999999753222 22345899999888888862 34789
Q ss_pred EEecCCcEEEEECCC-Cee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE---eecC---C
Q 010769 284 SASADKQVKIWDVAA-GKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAA---D 354 (502)
Q Consensus 284 sgs~Dg~v~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~---~ 354 (502)
+++.||.|++=.+.. +.+ ...+..|.++|.-++.-|..+..|++++.|+.+.-+|+++........ .... .
T Consensus 204 ~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 204 TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence 999999999987653 332 344567999999999999999999999999999999999876543222 1222 4
Q ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe------cCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
...++.+|...+.|++|+.+..+++||.|........ .++..+. ...-.|++++|+..+..+| ++..|-.
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~ 359 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---GVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDED 359 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchhhcccc---chhhhcCCccccccCcccceeEEecCCcccee-eeecccc
Confidence 6788999998889999999999999999976432211 1122222 2345799999998774444 4555677
Q ss_pred EEEEECCCCCe----------eEE-EEecCCCC--CEEEEEE-cCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 429 VKLWDLSNNQP----------SCI-ASRNPKAG--AVFSVAF-SEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 429 i~vwd~~~~~~----------~~~-~~~~~~~~--~v~~~~~-spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
|++|.-..+.- ..+ ..+.+|.. .|-.+-| -|...| +++|+.=|.|.||+-.+++.++-+-+.+
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii~~MegDr 436 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEIIRFMEGDR 436 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHHHHhhccc
Confidence 99995433211 111 12455543 4666665 577776 8888888999999999999887665554
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.3e-12 Score=124.87 Aligned_cols=242 Identities=14% Similarity=0.175 Sum_probs=161.8
Q ss_pred CCCCCEE-EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcc--cceeeEEecCCCCcEE
Q 010769 206 REKGNFM-AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNKEFRNIL 282 (502)
Q Consensus 206 s~~~~~l-a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~l 282 (502)
+|+|+|+ |+|...+.|+|||+..... .+..|. ..|.-.-++.+ -..+
T Consensus 60 s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------------KFERhlDae~V~feiLsDD-~SK~ 109 (703)
T KOG2321|consen 60 SPDGQYLLATGTYKPQIKVYDLANLSL-----------------------------KFERHLDAEVVDFEILSDD-YSKS 109 (703)
T ss_pred cCCCcEEEEecccCCceEEEEccccee-----------------------------eeeecccccceeEEEeccc-hhhh
Confidence 8999875 7889999999999974221 222332 33444444444 3344
Q ss_pred EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCC
Q 010769 283 ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDP 362 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p 362 (502)
+.-..|.+|-+... .|.- ..++ -...-..++++.-. .-|++++....|+-+++..+.....+....+.+++|..++
T Consensus 110 v~L~~DR~IefHak-~G~h-y~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 110 VFLQNDRTIEFHAK-YGRH-YRTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred eEeecCceeeehhh-cCee-eeee-cCcCCccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 44556677765532 2211 1111 12233456666544 3355555667788899998887776666678899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-----CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-----AVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
-.+ ++++|+.+|.|.+||.|........ .....+..|.+ .|+++.|+.+| -.+++|+..|.|.|||++..
T Consensus 186 ~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l---~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 186 EHG-LLACGTEDGVVEFWDPRDKSRVGTL---DAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ccc-eEEecccCceEEEecchhhhhheee---ecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccC
Confidence 654 8999999999999999986321111 11111223443 49999999987 89999999999999999999
Q ss_pred CeeEEEEecCCCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCcccccc
Q 010769 438 QPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~spd~~-~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
+|..+.. ++..-+|..+.|.+.+. -.|++ .....++|||-.+|+.....
T Consensus 261 ~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asi 310 (703)
T KOG2321|consen 261 KPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASI 310 (703)
T ss_pred Cceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeec
Confidence 9755543 44567899999977632 13544 44568999999999876543
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.52 E-value=1.1e-11 Score=109.41 Aligned_cols=244 Identities=15% Similarity=0.130 Sum_probs=169.1
Q ss_pred CCC-EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 208 KGN-FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~-~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
+|. .|+.+-..|.|.++..+.......+.-+. ...-......++.|++. +..++++-
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls---------------------~~ki~~~~~lslD~~~~-~~~i~vs~ 140 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS---------------------SKKISVVEALSLDISTS-GTKIFVSD 140 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccc---------------------hhhhhheeeeEEEeecc-CceEEEEc
Confidence 455 56777778999999875322211110000 00001114567889888 55788888
Q ss_pred cCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc--ceEeecCCeEEEEeCC
Q 010769 287 ADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAWDP 362 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~v~~~p 362 (502)
.+|.+.+-+...... ++..+.|.-.+....|+...++++++|+.|+.+..||+|.+.... ....|...|.++.-+|
T Consensus 141 s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~ 220 (339)
T KOG0280|consen 141 SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP 220 (339)
T ss_pred CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCC
Confidence 889998666555543 347789999999999999998999999999999999999655322 1345788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee--
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS-- 440 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~-- 440 (502)
..+.++++|+-|-.|++||.|+. .+|++.-. -.+.|..+.++|.-...|+.++.-+-.+|-++..+...
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm--------~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~ 291 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNM--------GKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQ 291 (339)
T ss_pred CCCceEEEeccccceeeeehhcc--------cCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchh
Confidence 88889999999999999999976 35555443 34889999999964333344444344888888766543
Q ss_pred -EEEEecCCCCCEEEEEEcCCCCcEEEEEe-CCCcEE-EEECCCCc
Q 010769 441 -CIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLE-IWDTLSDA 483 (502)
Q Consensus 441 -~~~~~~~~~~~v~~~~~spd~~~llasg~-~dg~i~-vwd~~~~~ 483 (502)
.......|.+-+..-.|..... +|||++ .|..++ +|-..++.
T Consensus 292 ~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 292 IVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred eeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccCC
Confidence 3445566777777777855544 477754 466644 78766654
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=1.8e-10 Score=102.95 Aligned_cols=234 Identities=14% Similarity=0.187 Sum_probs=154.3
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE-EecCC--
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA-VGSME-- 218 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la-~g~~d-- 218 (502)
..+++|+.+..-+++|...| .+||..+.-..... ..+++ .+ +.+.=+- -..++|| +||..
T Consensus 8 ~lsvs~NQD~ScFava~~~G----friyn~~P~ke~~~--r~~~~---~G--~~~veML------fR~N~laLVGGg~~p 70 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG----FRIYNCDPFKESAS--RQFID---GG--FKIVEML------FRSNYLALVGGGSRP 70 (346)
T ss_pred eeEEEEccCCceEEEEecCc----eEEEecCchhhhhh--hcccc---Cc--hhhhhHh------hhhceEEEecCCCCC
Confidence 44589999999999998776 68888775322000 01111 11 1110000 1245554 44443
Q ss_pred ----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 219 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 219 ----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
..+.|||=....+ . ..-....+|.++.+.++ .|+..- .+.|.||
T Consensus 71 ky~pNkviIWDD~k~~~---------------------------i-~el~f~~~I~~V~l~r~---riVvvl-~~~I~Vy 118 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERC---------------------------I-IELSFNSEIKAVKLRRD---RIVVVL-ENKIYVY 118 (346)
T ss_pred CCCCceEEEEecccCcE---------------------------E-EEEEeccceeeEEEcCC---eEEEEe-cCeEEEE
Confidence 4799999221110 0 11135678999999987 454444 4789999
Q ss_pred ECC-CCeeeEEeccCC--CCeEEEEEcCCCCcEEEE-EECCCcEEEEeCCCCCC--ccceEeecCCeEEEEeCCCCCCEE
Q 010769 295 DVA-AGKCNLTLEHHT--DKVQAVAWNHHSPQILLS-GSFDRSVVMKDARISTH--SGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 295 d~~-~~~~~~~~~~h~--~~v~~l~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~v~~~p~~~~~l 368 (502)
... +.+.++.+..-. ..+.+++-+... .+|+. |-.-|.|.|-|+..... ......|.+.|.|++.+.+|. ++
T Consensus 119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~v 196 (346)
T KOG2111|consen 119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LV 196 (346)
T ss_pred EcCCChhheeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EE
Confidence 988 556666664322 234333333322 33333 45579999999987665 355678999999999999876 89
Q ss_pred EEEeCCCe-EEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 369 VVSLEDGT-IKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 369 ~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
++++..|+ |+|||..++ ..+..+.. ....|.+++|||+. .+||++|..|+|+||.++.
T Consensus 197 ATaStkGTLIRIFdt~~g---------~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDG---------TLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEeccCcEEEEEEEcCCC---------cEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeec
Confidence 99999997 899999998 55555542 34579999999998 9999999999999999876
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.47 E-value=2e-12 Score=114.01 Aligned_cols=207 Identities=18% Similarity=0.165 Sum_probs=149.5
Q ss_pred cceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE
Q 010769 193 PLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL 272 (502)
Q Consensus 193 ~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 272 (502)
.+++.| ++.+.-++++-.+|.+.+-+...+. .......+.|.-.++..
T Consensus 124 ~lslD~-------~~~~~~i~vs~s~G~~~~v~~t~~~-------------------------le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 124 ALSLDI-------STSGTKIFVSDSRGSISGVYETEMV-------------------------LEKVQTWKVHEFEAWTA 171 (339)
T ss_pred eeEEEe-------eccCceEEEEcCCCcEEEEecceee-------------------------eeecccccccceeeeee
Confidence 355666 6778889999999999854443211 11222456899999999
Q ss_pred EecCCCCcEEEEEecCCcEEEEECC-CCeeeEE-eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe
Q 010769 273 AWNKEFRNILASASADKQVKIWDVA-AGKCNLT-LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA 350 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~-~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 350 (502)
.|+....+++++|+.|+.+.-||++ .++.+.. .+.|...|.++.-+|..+.++++|++|-.|++||.|+-..+.....
T Consensus 172 ~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~ 251 (339)
T KOG0280|consen 172 KFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK 251 (339)
T ss_pred ecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence 9998888899999999999999998 3344444 4678999999999988889999999999999999997666655667
Q ss_pred ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCcE
Q 010769 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMV 429 (502)
Q Consensus 351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i 429 (502)
..+.|..+.++|.....+++++.-.-.++.+........ .........|.+-+..-.|.... .+|+||+. |+.+
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~ 326 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKI 326 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhcCceEEEecccccch----heeeeccccccceeecccccccc-ceeeeeeccccce
Confidence 779999999999755455555555556777776653210 12344456677777777775543 67888764 5554
Q ss_pred E-EEECCC
Q 010769 430 K-LWDLSN 436 (502)
Q Consensus 430 ~-vwd~~~ 436 (502)
+ +|-.-+
T Consensus 327 ~~~Wl~~t 334 (339)
T KOG0280|consen 327 RQLWLHIT 334 (339)
T ss_pred eeeeeecc
Confidence 4 664333
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.7e-11 Score=121.78 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=132.8
Q ss_pred CCCCCEEEEecC---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 206 REKGNFMAVGSM---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 206 s~~~~~la~g~~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
+|+|+.|+..+. ++.|.+|++.++... .+..+...+.+.+|+|++..++
T Consensus 210 SpDG~~lay~s~~~g~~~i~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 210 SPNRQEITYMSYANGRPRVYLLDLETGQRE----------------------------LVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred CCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------------EeecCCCcccCcEECCCCCEEE
Confidence 899999988764 468999999753210 1123455677889999977666
Q ss_pred EEEecCCc--EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-CCC--cEEEEeCCCCCCccceEeecCCeEE
Q 010769 283 ASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-FDR--SVVMKDARISTHSGFKWAVAADVES 357 (502)
Q Consensus 283 ~sgs~Dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~ 357 (502)
++.+.++. |.+||+.++.. ..+..+........|+|++ +.|+..+ .+| .|.++|+..+.... .......+..
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~ 338 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYST 338 (435)
T ss_pred EEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccC
Confidence 67777665 77779887765 4455566667789999999 5555444 444 57788876654433 2223455677
Q ss_pred EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-C-----CcE
Q 010769 358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-D-----KMV 429 (502)
Q Consensus 358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-d-----g~i 429 (502)
..|+|++..++++....+ .|.+||+... ....+. ....+..+.|+|+| ++|+..+. . ..+
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~----------~~~~lt-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L 406 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGS----------GERILT-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKL 406 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCC----------ceEecc-CCCCCCCCeECCCC-CEEEEEEccCCCCCcceE
Confidence 899999885555543333 5788887543 112222 22346788999998 55554333 2 257
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
.++++...... .+. ..+.+...+|+|-
T Consensus 407 ~~~dl~g~~~~---~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 407 YTVDLTGRNER---EVP-TPGDASDPAWSPL 433 (435)
T ss_pred EEEECCCCceE---Ecc-CCCCccCcccCCC
Confidence 88888766532 222 2344667778763
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.6e-11 Score=121.45 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=126.6
Q ss_pred CCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769 205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
|+|+|+.|+..+.. ..|.+||+.++... .+......+.+.+|+|++..+
T Consensus 203 wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----------------------------~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 203 WSPDGTKLAYVSFESKKPVVYVHDLATGRRR----------------------------VVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred EcCCCCEEEEEEccCCCcEEEEEECCCCCEE----------------------------EeecCCCCccceEECCCCCEE
Confidence 38999999887643 46999999753211 011122345688999997655
Q ss_pred EEEEecCCcEEEEEC--CCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC--CCCCccceEeecCCeEE
Q 010769 282 LASASADKQVKIWDV--AAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTHSGFKWAVAADVES 357 (502)
Q Consensus 282 l~sgs~Dg~v~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~ 357 (502)
+++.+.+|...||.+ ..+. ...+..+........|+|+|..+++++...|...+|.+. ++.... ..........
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~ 332 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTS 332 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCc
Confidence 567788887666654 4443 455655666667889999994444454445666777654 332222 1112233456
Q ss_pred EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCc--EEEE
Q 010769 358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKM--VKLW 432 (502)
Q Consensus 358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~--i~vw 432 (502)
.+|+|++..+++++...+ .|.+||+.++. ...+. .........|+|++ ++|+.++. .|. +.+.
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~----------~~~lt-~~~~~~~p~~spdg-~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQ----------VTALT-DTTRDESPSFAPNG-RYILYATQQGGRSVLAAV 400 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCC----------eEEcc-CCCCccCceECCCC-CEEEEEEecCCCEEEEEE
Confidence 789999875444443333 69999998752 12222 22334678999999 55555443 433 5555
Q ss_pred ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769 433 DLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
++. +. ....+..+.+.+...+|+|-
T Consensus 401 ~~~-g~--~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SSD-GR--IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ECC-CC--ceEEeecCCCCCCCCccCCC
Confidence 664 33 22333345566777888874
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.3e-11 Score=118.82 Aligned_cols=189 Identities=13% Similarity=0.189 Sum_probs=156.3
Q ss_pred CCcEEEEEecCCcEEEEECCCCeeeEEec---cCCCCeEEEEEc------C-------------CCCcEEEEEECCCcEE
Q 010769 278 FRNILASASADKQVKIWDVAAGKCNLTLE---HHTDKVQAVAWN------H-------------HSPQILLSGSFDRSVV 335 (502)
Q Consensus 278 ~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~---~h~~~v~~l~~~------~-------------~~~~~l~s~~~dg~i~ 335 (502)
...++|....||.+++|+...++....|. .-++..++..|. | .+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 35689999999999999999988777663 234556666662 1 1335788889999999
Q ss_pred EEeCCCCCCccceE--eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc
Q 010769 336 MKDARISTHSGFKW--AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 413 (502)
Q Consensus 336 vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 413 (502)
+|++..++...... .|.+.|.++.|+.... .|++++.|+.+..|+.... ............+.+++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEK---------VIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccc---------eeeeeeccCCCccceEEEc
Confidence 99999887665443 5788999999988755 8999999999999999886 6677777888889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC-----CCcEEEEEeCCCcEEEEECCC
Q 010769 414 PLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED-----SPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 414 p~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd-----~~~llasg~~dg~i~vwd~~~ 481 (502)
|++ .+|++++ ++|++||+.+.+ .+..+.+|.++|.+++|.-. |.|+|.+......+.+|-+..
T Consensus 154 ~D~-~~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDG-KILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCC-CEEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 997 8898887 479999999998 68899999999999999877 788888888888899998865
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=1.1e-11 Score=109.48 Aligned_cols=152 Identities=18% Similarity=0.331 Sum_probs=102.4
Q ss_pred eeEEecCCCCcEEEEEec---------CCcEEEEECCC-CeeeEEecc-CCCCeEEEEEcCCCCcEEEE-EECCCcEEEE
Q 010769 270 LGLAWNKEFRNILASASA---------DKQVKIWDVAA-GKCNLTLEH-HTDKVQAVAWNHHSPQILLS-GSFDRSVVMK 337 (502)
Q Consensus 270 ~~l~~~~~~~~~l~sgs~---------Dg~v~vwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s-~~~dg~i~vw 337 (502)
..+.|+|.|..+++.... -+...||-++. +..+..+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899997666665552 13455665532 233444432 34579999999999554333 4467899999
Q ss_pred eCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe---CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769 338 DARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
|++. ..+ ..-....+..+.|+|+|. ++++++ ..|.|.+||+++. ..+.... | ..++.++|+|
T Consensus 89 d~~~-~~i--~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~---------~~i~~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVKG-KKI--FSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK---------KKISTFE-H-SDATDVEWSP 153 (194)
T ss_pred cCcc-cEe--EeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC---------EEeeccc-c-CcEEEEEEcC
Confidence 9972 222 222356788999999987 555543 3578999999965 4444433 3 3478999999
Q ss_pred CCCCEEEEEeC------CCcEEEEECCCC
Q 010769 415 LVPNLLATGST------DKMVKLWDLSNN 437 (502)
Q Consensus 415 ~~~~~l~t~s~------dg~i~vwd~~~~ 437 (502)
+| ++|++++. |+.++||++...
T Consensus 154 dG-r~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 DG-RYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CC-CEEEEEEeccceeccccEEEEEecCe
Confidence 99 77777664 788999998643
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.9e-11 Score=114.20 Aligned_cols=288 Identities=16% Similarity=0.263 Sum_probs=179.8
Q ss_pred ccccccccCCCceEEEEE-----ecCCcc--eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEE
Q 010769 141 DLEDMTINPNDAVIVCAR-----NEDDVS--HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMA 213 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~-----~~~~~~--~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la 213 (502)
.+.++.|+|-|++|.+=. .++..+ .+.+|...+ .. ..+..... ..-.| .+.|+.+..+.|
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~--~~s~~q~k------~Q~~W---~~qfs~dEsl~a 141 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GV--QRSQIQKK------MQNGW---VPQFSIDESLAA 141 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeecc--ce--ehhheehh------hhcCc---ccccccchhhhh
Confidence 688999999999997631 111111 344555443 20 00111111 12234 244577766544
Q ss_pred EecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC-cEEEE-----Eec
Q 010769 214 VGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR-NILAS-----ASA 287 (502)
Q Consensus 214 ~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s-----gs~ 287 (502)
-- ..+.+.+|++....... .. -|...|+.+.++|... ..+|+ ++.
T Consensus 142 rl-v~nev~f~~~~~f~~~~--------------------------~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 142 RL-VSNEVQFYDLGSFKTIQ--------------------------HK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred hh-hcceEEEEecCCcccee--------------------------ee--eeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 33 34789999987522111 11 2567899999998733 34443 356
Q ss_pred CCcEEEEECCCCee-----eEEeccCCCCeEEEEEcCCCCcEEEEEEC--C---------CcEEEEeCCCCCCccceEee
Q 010769 288 DKQVKIWDVAAGKC-----NLTLEHHTDKVQAVAWNHHSPQILLSGSF--D---------RSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 288 Dg~v~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--d---------g~i~vwd~~~~~~~~~~~~~ 351 (502)
-+.|+||.+..... .++| ....-..+.|++.|..+|+.++. | .++++.++.... .......
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L~k 269 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPLLK 269 (566)
T ss_pred CcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEecCC
Confidence 67899998763221 1222 12233457899988666665543 2 367788877322 3334455
Q ss_pred cCCeEEEEeCCCCCCE-EEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010769 352 AADVESLAWDPHAEHS-FVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST---DK 427 (502)
Q Consensus 352 ~~~v~~v~~~p~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~---dg 427 (502)
.++|.++.|+|.+..+ ++.|..-..+.|||++. .+++.+ ..++-+++-|+|.| ++|+.+|. -|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----------~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----------KPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPG 336 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCC----------CEeEeC--CCCCccceEECCCC-CEEEEeecCCCCC
Confidence 7899999999987643 33466788999999984 455544 46777899999999 78777776 47
Q ss_pred cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCcccccccc
Q 010769 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS-----KGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~-----dg~i~vwd~~~~~~~~~~~~ 490 (502)
.|-|||+.+.+ ++..+... .-+-+.|+|||+|+|.+... |+.++||+......-.+.|.
T Consensus 337 ~mEvwDv~n~K--~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~ 400 (566)
T KOG2315|consen 337 DMEVWDVPNRK--LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFK 400 (566)
T ss_pred ceEEEeccchh--hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhh
Confidence 89999999866 55555543 34558999999985554444 67899999965443333333
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=9.9e-11 Score=117.59 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=129.7
Q ss_pred CcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769 264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd 338 (502)
.+...+.+.+|+|++. +|+.++.. ..|++|++.+++... +..+...+.+++|+|++..++++.+.++ .|++|+
T Consensus 187 ~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 3556788999999955 56655543 479999999886543 3335566778999999955555665554 588889
Q ss_pred CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ...+........|+|++..+++++...+ .|+++++.+. ....+..+...+..+.|+|++
T Consensus 265 ~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 265 LDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG----------EVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC----------CEEEeecCCCCccCeEECCCC
Confidence 87765332 2223334456789998875555555444 5777777654 233444455667888999998
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC--cEEEEECC
Q 010769 417 PNLLATGSTDK---MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTL 480 (502)
Q Consensus 417 ~~~l~t~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg--~i~vwd~~ 480 (502)
.+|+.++.++ .|.+||+.++....+.. . .......|+|++++++++...++ .+++.+..
T Consensus 334 -~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~---~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 -DLIAFVHREGGGFNIAVMDLDGGGERVLTD---T-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred -CEEEEEEccCCceEEEEEeCCCCCeEEccC---C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7777776665 78999998865322221 1 22445689999997655555444 35555543
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=3.8e-11 Score=108.23 Aligned_cols=250 Identities=15% Similarity=0.239 Sum_probs=171.9
Q ss_pred CCCCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEE
Q 010769 135 DDEDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAV 214 (502)
Q Consensus 135 ~~~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~ 214 (502)
-+.|.+.|++...-|...-+..++.+. +++||.-......-+. .+|. .|..+.++.+ .+....|++
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~dr---tvrv~lkrds~q~wps--I~~~--mP~~~~~~~y-------~~e~~~L~v 85 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDR---TVRVWLKRDSGQYWPS--IYHY--MPSPCSAMEY-------VSESRRLYV 85 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccc---eeeeEEeccccccCch--hhhh--CCCCceEeee-------eccceEEEE
Confidence 355778899999999999999998776 6788876555433233 3343 3455566655 577889999
Q ss_pred ecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEE
Q 010769 215 GSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIW 294 (502)
Q Consensus 215 g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vw 294 (502)
|-..|++.-+.+...- .+.........|...|..+-|+-. ...+++.+.|..+.--
T Consensus 86 g~~ngtvtefs~sedf-----------------------nkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~h 141 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDF-----------------------NKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWH 141 (404)
T ss_pred EEecceEEEEEhhhhh-----------------------hhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEE
Confidence 9999999888774210 112222334479999999999877 5688899998766544
Q ss_pred ECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC--CCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769 295 DVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 295 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 372 (502)
-.+.+..+..+.. ....+++.+.- .+...|...|.|.+..+... ..+..+.+|.+.+.+++|.|. +.++++|.
T Consensus 142 c~e~~~~lg~Y~~-~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~ 216 (404)
T KOG1409|consen 142 CTESGNRLGGYNF-ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGA 216 (404)
T ss_pred eeccCCcccceEe-eccCCCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEecc
Confidence 4444443332211 11111111111 13445555666655544332 334445578889999999996 45899999
Q ss_pred CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 373 EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 373 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
.|..+.+||+.-. ......+.+|...|..+...+.- +.|.+++.||.|.+|+++.
T Consensus 217 ~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccc
Confidence 9999999999876 35667788999999999988876 8899999999999999865
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.3e-10 Score=115.00 Aligned_cols=206 Identities=13% Similarity=0.107 Sum_probs=125.4
Q ss_pred CcccceeeEEecCCCCcEEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEeC
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDA 339 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~ 339 (502)
.+...+.+..|+|++..++++...++ .|.+||+.+++... +...........|+|+|..++++.+.+|. |.++|+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 35567889999999654444433333 58889998876432 22223344578999999556666777775 777788
Q ss_pred CCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769 340 RISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
.++.... ...+.......+|+|++..+++++..+|. |+++|+.++ . ...+..+.......+|+|+|
T Consensus 294 ~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~-~~~Lt~~g~~~~~~~~SpDG- 361 (448)
T PRK04792 294 ATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------K-VSRLTFEGEQNLGGSITPDG- 361 (448)
T ss_pred CCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEEecCCCCCcCeeECCCC-
Confidence 7665432 22334456778999998866666655554 556666654 1 22222222334557899998
Q ss_pred CEEEEEe-CCC--cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCccccc
Q 010769 418 NLLATGS-TDK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAGISN 487 (502)
Q Consensus 418 ~~l~t~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~~~~~~~~~ 487 (502)
++|+..+ ..+ .|.++|+.+++...+.. . .......|+|+|++++.+...+|. ++++++ ++...+.
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~ 431 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAMQVLTS---T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR 431 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCeEEccC---C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 5555444 344 35667888776433221 1 122345799999976666665554 667776 3444333
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=4.8e-10 Score=106.23 Aligned_cols=308 Identities=13% Similarity=0.125 Sum_probs=193.2
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
....+..+++||.|.+|++....+ +++|-...... .+...|. .+.. +.|||.++||.+-+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~----V~~~~g~~~~~---l~~~~~~--------~V~~----~~fSP~~kYL~tw~~ 91 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG----VECWGGPSKAK---LVRFRHP--------DVKY----LDFSPNEKYLVTWSR 91 (561)
T ss_pred cCcchhheeecCcchheehhhccc----eEEccccchhh---eeeeecC--------Ccee----cccCcccceeeeecc
Confidence 456789999999999999998775 67776654432 2222221 1122 344899999999776
Q ss_pred CCc---------------EEEeeCCCCCCCCceeeeCCcchhh-hhhcc-------------------ccCCcccccccc
Q 010769 218 EPA---------------IEIWDLDVIDEVQPHVILGGIDEEK-KKKKS-------------------KKGKKSSIKYKK 262 (502)
Q Consensus 218 dg~---------------I~iwdl~~~~~~~~~~~l~~~~~~~-~~~~~-------------------~~~~~~~~~~~~ 262 (502)
.+. +.|||..++..+..+......-... -.+.. ...-.......+
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc
Confidence 655 8999998877665543332220000 00000 000000000011
Q ss_pred CCcccceeeEEecCCCCc-EEEE-----EecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-------
Q 010769 263 GSHTDSVLGLAWNKEFRN-ILAS-----ASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------- 329 (502)
Q Consensus 263 ~~h~~~V~~l~~~~~~~~-~l~s-----gs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~------- 329 (502)
....|+..+|+|.+.+ .||. ....+++++|.+..++.+.+-......-..+.|++.|..+|+-.-
T Consensus 172 --r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 172 --RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred --cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence 1256778888887322 3333 466789999999877766554433444457899999843333211
Q ss_pred ---CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769 330 ---FDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 405 (502)
Q Consensus 330 ---~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~ 405 (502)
....+.|++++....... ....++|...+|.|.+..+.++. .....+.++|++.. . .+.....
T Consensus 250 syfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l--~~~~Pe~ 316 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------L--RFYFPEQ 316 (561)
T ss_pred ceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc----------e--EEecCCc
Confidence 125688888886555442 36688999999999887654444 68889999999853 2 2333445
Q ss_pred CeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-----CCCcEEEE
Q 010769 406 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-----SKGKLEIW 477 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~-----~dg~i~vw 477 (502)
.=..+.|+|.+ ++++.++.+ |.+-+||..... .++..+.+. ...-+.|+|+++|++.... .|..|+||
T Consensus 317 ~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf-~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 317 KRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRF-KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred ccccccccCcc-cEEEEecCCccccceEEeccCCce-EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEE
Confidence 55778899998 888887765 679999987654 344344433 3455789999997544332 36689999
Q ss_pred ECCCCc
Q 010769 478 DTLSDA 483 (502)
Q Consensus 478 d~~~~~ 483 (502)
++....
T Consensus 393 ~v~g~~ 398 (561)
T COG5354 393 DVYGAK 398 (561)
T ss_pred EecCch
Confidence 996544
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.6e-10 Score=114.79 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=126.1
Q ss_pred CcccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEe
Q 010769 264 SHTDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKD 338 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd 338 (502)
.+...+...+|+|++. .|+..+.. ..|.+|++.+++... +....+.+....|+|+|..++++.+.+| .|.+||
T Consensus 196 ~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 4567789999999965 55554433 369999998886533 3333445567899999955555666665 588889
Q ss_pred CCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 339 ARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
+.++.... ............|+|++..+++++..+| .|+++++.++ . ...+...........|+|++
T Consensus 274 ~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g---------~-~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 274 LASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG---------R-AERVTFVGNYNARPRLSADG 342 (430)
T ss_pred CCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC---------C-EEEeecCCCCccceEECCCC
Confidence 88765432 2333445667889999886666655554 4666777654 1 12222122334567899998
Q ss_pred CCEEEEEeC-CC--cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC--cEEEEECCC
Q 010769 417 PNLLATGST-DK--MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--KLEIWDTLS 481 (502)
Q Consensus 417 ~~~l~t~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg--~i~vwd~~~ 481 (502)
+.|+..+. ++ .|.+||+.++....+.. . .......|+|+|++++.+....| .|.++++..
T Consensus 343 -~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 343 -KTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -CEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 56655543 33 48889998877433322 1 12235689999997666655444 466667643
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1.5e-09 Score=105.48 Aligned_cols=286 Identities=13% Similarity=0.176 Sum_probs=169.2
Q ss_pred ccccccccCCCceEEEEEecC-CcceeEEEEEecCCCCCCceeeeeccc-cCCCcceeeeecCCCCCCCCCCEEEEecC-
Q 010769 141 DLEDMTINPNDAVIVCARNED-DVSHLEVYILEESDGGDPNLYVHHHII-IPAFPLCMAWLDCPLKDREKGNFMAVGSM- 217 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~-~~~~l~v~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~s~~~~~la~g~~- 217 (502)
.-.-++++|++++|.++.... ....+..|.++...+ .|....... ...-|..+.. +|++++|+++..
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---~L~~~~~~~~~g~~p~~i~~-------~~~g~~l~vany~ 107 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---TLTLLNSVPSGGSSPCHIAV-------DPDGRFLYVANYG 107 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---EEEEEEEEEESSSCEEEEEE-------CTTSSEEEEEETT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---eeEEeeeeccCCCCcEEEEE-------ecCCCEEEEEEcc
Confidence 446788999999999987653 445777777776644 444433333 2333333332 789999998875
Q ss_pred CCcEEEeeCCCCCCCCcee-eeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 218 EPAIEIWDLDVIDEVQPHV-ILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
+|.|.+++++....+.... +..- ....... .........++.|+|+++.++++.-....|.+|++
T Consensus 108 ~g~v~v~~l~~~g~l~~~~~~~~~-----------~g~g~~~---~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~ 173 (345)
T PF10282_consen 108 GGSVSVFPLDDDGSLGEVVQTVRH-----------EGSGPNP---DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI 173 (345)
T ss_dssp TTEEEEEEECTTSEEEEEEEEEES-----------EEEESST---TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEEccCCcccceeeeeccc-----------CCCCCcc---cccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence 7999999997532222110 0000 0000000 01123446789999996655555545568999999
Q ss_pred CCCe--e--eEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc-cceE--e-------ecCCeEEEEeC
Q 010769 297 AAGK--C--NLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS-GFKW--A-------VAADVESLAWD 361 (502)
Q Consensus 297 ~~~~--~--~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~--~-------~~~~v~~v~~~ 361 (502)
.... . ...+. ........+.|+|++..++++.-.++.|.++++...... .... . .......++++
T Consensus 174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 7654 2 12222 234568899999999566667777899999998832211 1111 0 11257789999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCCC
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDKMVKLWDL--SNNQ 438 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg~i~vwd~--~~~~ 438 (502)
|++..++++....+.|.+|++...... ...+..+.........++++|++ ++|+++. .++.|.+|++ .++.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCc
Confidence 998866666677889999999432100 13344444445568999999999 6665555 6778999976 4555
Q ss_pred eeEEEEecCCCCCEEEEEE
Q 010769 439 PSCIASRNPKAGAVFSVAF 457 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~~~~ 457 (502)
+...... .......||.|
T Consensus 328 l~~~~~~-~~~~~p~ci~f 345 (345)
T PF10282_consen 328 LTPVGSS-VPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEE-EESSSEEEEEE
T ss_pred EEEeccc-ccCCCCEEEeC
Confidence 4333322 22344666665
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=5.4e-10 Score=111.44 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=125.8
Q ss_pred ccceeeEEecCCCCc--EEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC----cEEEE
Q 010769 266 TDSVLGLAWNKEFRN--ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR----SVVMK 337 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~--~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vw 337 (502)
...+.+-+|+|+|.. ++++...+| .|.+.++.+++... +....+......|+|+|..++++....| .+.+|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 345667799999765 333444444 57778888775433 2223445567899999955554443333 34446
Q ss_pred eCCCCC--CccceEee-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEE--CCCCCCCCCCCCCCccEEEecCCCCeeEEEE
Q 010769 338 DARIST--HSGFKWAV-AADVESLAWDPHAEHSFVVSLEDGTIKGFD--IRTAKSDPDSTSQQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 338 d~~~~~--~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 412 (502)
++..+. ........ .......+|+|+|..+++++..+|...+|. +... ......+..+...+....|
T Consensus 263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~--------g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE--------GQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc--------ccceEEeccCCCCccceeE
Confidence 766431 11112221 233467899999886666666677555554 4321 1223344445566788999
Q ss_pred cCCCCCEEEEEeC-C--CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCcc
Q 010769 413 NPLVPNLLATGST-D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAG 484 (502)
Q Consensus 413 sp~~~~~l~t~s~-d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d--g~i~vwd~~~~~~ 484 (502)
+|+| +.|+..+. + ..|.+||+.+++...+. .....+....|+|||+++++++... ..|++|++.+++.
T Consensus 335 SPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 335 SPDG-KKIAFCSVIKGVRQICVYDLATGRDYQLT---TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEcc---CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 9999 65655443 3 36999999988743332 2234567899999999766555443 4688889877654
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=3e-10 Score=110.45 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=140.7
Q ss_pred cEE-EEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769 280 NIL-ASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 280 ~~l-~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 358 (502)
+++ ++-..++.|.|.|..+.+.+..+.........+.++|++ +++++++.||.|.++|+.+.+... ..........+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~-~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA-TIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE-EEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE-EEecCCCcceE
Confidence 455 455668999999999999999997655545567899999 788888999999999999988655 45666778999
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-------CCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-------DKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
+++++|..++++....+.+.++|.++. +++..+... ...+.++..+|..+.++++.-.-+.|.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tl---------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETL---------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT-----------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccc---------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence 999999866666678999999999987 666666543 3467888888887456666666688988
Q ss_pred EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 432 WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
.|....++....... .........|+|+++|++++......|-++|+.+++.+..
T Consensus 155 Vdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 898877654443433 3456788999999999888777788999999999877654
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=2.7e-10 Score=109.95 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=149.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec------C---
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN------K--- 276 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~------~--- 276 (502)
+|.+.|+|..+.||.++||+.........+.... .-++..+++.|. |
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~------------------------~~s~t~~~~~w~L~~~~s~~k~ 57 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA------------------------SLSGTCTYTKWGLSADYSPMKW 57 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch------------------------hccCcceeEEEEEEeccchHHH
Confidence 4568899999999999999987644322211110 111222333331 1
Q ss_pred ----------CCCcEEEEEecCCcEEEEECCCCeeeEEec--cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769 277 ----------EFRNILASASADKQVKIWDVAAGKCNLTLE--HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 277 ----------~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 344 (502)
.+...++-|...|.|.+|++..++....+. .|.+.|.++.|+.+- ..|.+++.|+.+..|+......
T Consensus 58 ~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 58 LSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred HhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee
Confidence 123478888999999999999999888874 689999999999887 7899999999999999999888
Q ss_pred ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC-----CCCE
Q 010769 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL-----VPNL 419 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~~ 419 (502)
....+.....+.+++.+|++. .+++++ +.|++||+.+. +.+..+.+|.++|++++|.-. |..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEecccccccee
Confidence 876667778899999999966 666654 78999999997 889999999999999999876 5455
Q ss_pred EEEEeCCCcEEEEECCC
Q 010769 420 LATGSTDKMVKLWDLSN 436 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~ 436 (502)
|.+...+..+.+|-+..
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 66666677788886654
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=5.2e-10 Score=112.37 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=116.8
Q ss_pred CCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc
Q 010769 204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 280 (502)
Q Consensus 204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 280 (502)
.|+|+|++||.++.. ..|++|++.++... .+..+...+.+++|+|++..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----------------------------~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----------------------------KVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----------------------------EeecCCCCccceEECCCCCE
Confidence 348999999987654 47999998753210 11123455667899999665
Q ss_pred EEEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCeE
Q 010769 281 ILASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVE 356 (502)
Q Consensus 281 ~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~ 356 (502)
++++.+.++ .|.+|++.+++.. .+..+........|+|++..+++++...+ .|.++++.+..... .........
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc
Confidence 656666555 5888998877543 34445555567899999944444444444 57777877654322 222345567
Q ss_pred EEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC---cEE
Q 010769 357 SLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---MVK 430 (502)
Q Consensus 357 ~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---~i~ 430 (502)
.+.|+|++. +++.+..++ .|.+||+.+.. ...+.. ........|+|++ ++|+..+.++ .++
T Consensus 326 ~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~----------~~~l~~-~~~~~~p~~spdg-~~l~~~~~~~~~~~l~ 392 (417)
T TIGR02800 326 SPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG----------ERVLTD-TGLDESPSFAPNG-RMILYATTRGGRGVLG 392 (417)
T ss_pred CeEECCCCC-EEEEEEccCCceEEEEEeCCCCC----------eEEccC-CCCCCCceECCCC-CEEEEEEeCCCcEEEE
Confidence 889999887 455555444 78888887641 122221 2234556899998 5555555443 355
Q ss_pred EEECCC
Q 010769 431 LWDLSN 436 (502)
Q Consensus 431 vwd~~~ 436 (502)
+.+...
T Consensus 393 ~~~~~g 398 (417)
T TIGR02800 393 LVSTDG 398 (417)
T ss_pred EEECCC
Confidence 555443
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.5e-08 Score=92.83 Aligned_cols=279 Identities=11% Similarity=0.177 Sum_probs=177.8
Q ss_pred eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCc
Q 010769 165 HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGI 241 (502)
Q Consensus 165 ~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~ 241 (502)
.+.+|.++...+ .+..-.......-|.-++| +|++++|.++..+ |.|.-|.++..+.... .+.
T Consensus 17 gI~v~~ld~~~g---~l~~~~~v~~~~nptyl~~-------~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln-- 82 (346)
T COG2706 17 GIYVFNLDTKTG---ELSLLQLVAELGNPTYLAV-------NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLN-- 82 (346)
T ss_pred ceEEEEEeCccc---ccchhhhccccCCCceEEE-------CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--Eee--
Confidence 567788876665 4443333334445566666 7899888887554 7888888874321111 000
Q ss_pred chhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE-ecCCcEEEEECCC-CeeeE--EeccCCCC------
Q 010769 242 DEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA-SADKQVKIWDVAA-GKCNL--TLEHHTDK------ 311 (502)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg-s~Dg~v~vwd~~~-~~~~~--~~~~h~~~------ 311 (502)
.....+ .+-+.++++++++ +|+++ -..|.|.++-++. |.... .+..|.+.
T Consensus 83 -----------------~~~~~g--~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ 142 (346)
T COG2706 83 -----------------RQTLPG--SPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ 142 (346)
T ss_pred -----------------ccccCC--CCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence 001112 2238899999965 55555 4568999999865 43221 12235544
Q ss_pred ----eEEEEEcCCCCcEEEEEEC-CCcEEEEeCCCCCCccc---eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECC
Q 010769 312 ----VQAVAWNHHSPQILLSGSF-DRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIR 383 (502)
Q Consensus 312 ----v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~ 383 (502)
+.+..+.|++ ++|++... --.|.+|++..+..... ........+.+.|+|+++...+++=-+++|.+|...
T Consensus 143 ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 143 ESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred cCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 8889999999 66666643 34689999986554321 224566789999999988555566679999999988
Q ss_pred CCCCCCCCCCCCccEEEe------cCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCC--CCeeEEEEecCCCCCEEE
Q 010769 384 TAKSDPDSTSQQSSFTLH------AHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--NQPSCIASRNPKAGAVFS 454 (502)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~ 454 (502)
..... ...+..+. ........|.++|+| ++|+++.. ...|-+|.+.. ++...+.....+...-+.
T Consensus 222 ~~~g~-----~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~ 295 (346)
T COG2706 222 PAVGK-----FEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD 295 (346)
T ss_pred CCCce-----EEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc
Confidence 74110 01112111 123567889999999 77777654 44688887754 344444445555555789
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 455 ~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
+.|+|.+++|+|++-...+|.+|.+.....
T Consensus 296 F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 296 FNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred ceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 999999998666665566899998865543
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.3e-09 Score=109.58 Aligned_cols=213 Identities=14% Similarity=0.086 Sum_probs=125.6
Q ss_pred CCCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCc
Q 010769 204 KDREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRN 280 (502)
Q Consensus 204 ~~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 280 (502)
.|+|+|+.|+..+.. ..|.+||+.++... ..... .......+|+|++..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-------------------------~lt~~---~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-------------------------KVTSF---PGINGAPRFSPDGKK 275 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeE-------------------------EecCC---CCCcCCeeECCCCCE
Confidence 348999999876543 35888887643210 00111 122346799999765
Q ss_pred EEEEEecCCc--EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEeCCCCCCccceEeecCCeE
Q 010769 281 ILASASADKQ--VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRS--VVMKDARISTHSGFKWAVAADVE 356 (502)
Q Consensus 281 ~l~sgs~Dg~--v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~ 356 (502)
++++.+.+|. |.+||+.+++. ..+..+........|+|++..+++++..++. |.++|+.+++...... ......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~ 353 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNL 353 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCc
Confidence 6666777775 77788887764 3444455567788999999545555544444 5566776555332221 222334
Q ss_pred EEEeCCCCCCEEEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc--EEEE
Q 010769 357 SLAWDPHAEHSFVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLW 432 (502)
Q Consensus 357 ~v~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~vw 432 (502)
..+|+|++..+++++..++. |.++|+.++. ...+... .......|+|++..++++...++. ++++
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----------~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA----------MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCC----------eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 57899998866666555554 5556766541 1222211 122345799999444555544544 6777
Q ss_pred ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769 433 DLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
+..... ...+..+.+.+...+|+|-
T Consensus 423 ~~~G~~---~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 423 SIDGRF---KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ECCCCc---eEECcCCCCCcCCCccCCC
Confidence 774433 3334444566777888873
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.4e-09 Score=109.53 Aligned_cols=211 Identities=14% Similarity=0.133 Sum_probs=126.4
Q ss_pred CCCCCCEEEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769 205 DREKGNFMAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 205 ~s~~~~~la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
|+|+|+.|+..+.+ ..|.+|++.++... . +....+.+...+|+|++..+
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-------------------------~---l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-------------------------Q---ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-------------------------E---ccCCCCCcCCeEECCCCCEE
Confidence 38999999876544 46888898653211 0 11122334568999996655
Q ss_pred EEEEecCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCeEE
Q 010769 282 LASASADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADVES 357 (502)
Q Consensus 282 l~sgs~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~ 357 (502)
+++.+.+| .|.+||+.+++.. .+..+........|+|++..++++...+| .|.++++.++....... .......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 55666665 5888899887654 45555666777899999955555554444 46667776655332221 1223445
Q ss_pred EEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-CCC--cEEEE
Q 010769 358 LAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS-TDK--MVKLW 432 (502)
Q Consensus 358 v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s-~dg--~i~vw 432 (502)
..|+|++..++++...++ .|.+||+.++. ...+. +........|+|+| ++|+..+ ..+ .|.++
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----------~~~lt-~~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----------VRILT-DTSLDESPSVAPNG-TMLIYATRQQGRGVLMLV 403 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCC----------EEEcc-CCCCCCCceECCCC-CEEEEEEecCCceEEEEE
Confidence 789999885555554444 57888887652 11121 22223356899998 5555444 333 46677
Q ss_pred ECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769 433 DLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
++.... ...+..+.+.+...+|+|-
T Consensus 404 ~~~g~~---~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 404 SINGRV---RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCc---eEECcCCCCCcCCCccCCC
Confidence 775443 2223334556777778763
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=9.6e-10 Score=112.63 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=142.7
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg 219 (502)
+.|....+.-....++.++..+ .+++++.... .+...- ..--.|+-...+-..++++.-++++|+.-+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~n-----s~~i~d~~~~---~~~~~i----~~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRN-----SLLIRDSKNS---SVLSKI----QSDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred ccccccchhhhcceEEEEEcCc-----eEEEEecccC---ceehhc----CCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 3444455555667777777666 5555554443 222110 000011111111233477888999999999
Q ss_pred cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~ 299 (502)
.|.+|+... + .+...+.+|.+.|.++.|+.+ +.+++++|.|.++++|.+.++
T Consensus 156 ~iivW~~~~-d--------------------------n~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 156 EIIVWKPHE-D--------------------------NKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred cEEEEeccc-c--------------------------CCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccc
Confidence 999999861 1 111145689999999999999 569999999999999999998
Q ss_pred eeeE-EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEE
Q 010769 300 KCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 300 ~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~ 378 (502)
+... +.-+|+..|..++|+|. .+++++.|.++++|+................+..++..+.. ...++++.||.++
T Consensus 208 ~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 208 EVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLK 283 (967)
T ss_pred cccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchh
Confidence 7766 66789999999999996 79999999999999776554443233345568888888754 4788899999999
Q ss_pred EEECCCC
Q 010769 379 GFDIRTA 385 (502)
Q Consensus 379 i~d~~~~ 385 (502)
+|++...
T Consensus 284 ~~~l~~r 290 (967)
T KOG0974|consen 284 LWDLNGR 290 (967)
T ss_pred hhhhhcc
Confidence 9987543
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=3.5e-10 Score=115.76 Aligned_cols=192 Identities=13% Similarity=0.175 Sum_probs=149.9
Q ss_pred EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCe-----EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKV-----QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 346 (502)
Q Consensus 272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 346 (502)
..+.-. ...++.++.++.+.+||...+.....+.. ...+ .-+.+++.. -++++|+.-+.|.+|+........
T Consensus 93 ~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 93 AKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred cchhhh-cceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc
Confidence 333334 34788888889999999988777666652 3222 122334554 789999999999999998555444
Q ss_pred ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769 347 FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 347 ~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d 426 (502)
...+|.+.+.++.|+-++. ++++.++|.++++|++.+.. ......-+|+..|..+.|.|+ .++|++.|
T Consensus 170 ~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgHsaRvw~~~~~~n---~i~t~ged 237 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSRE--------VLGCTGFGHSARVWACCFLPN---RIITVGED 237 (967)
T ss_pred eecccCCceEEEEEccCCc-EEEEEecCcceeeeeccccc--------ccCcccccccceeEEEEeccc---eeEEeccc
Confidence 5778999999999999876 89999999999999999873 333567789999999999984 89999999
Q ss_pred CcEEEEECCCCCeeEEEEecCCC-CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 427 KMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
.+.++|+....+. ..+..|. ..|+.++..+... +++|++.||.+++|++...
T Consensus 238 ctcrvW~~~~~~l---~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 238 CTCRVWGVNGTQL---EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEEEeccccee---hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhcc
Confidence 9999997765542 2455553 4689999988887 6999999999999998653
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.9e-09 Score=106.26 Aligned_cols=181 Identities=10% Similarity=0.091 Sum_probs=106.5
Q ss_pred ceeeEEecCCCCcEEEEEecCC----cEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe--
Q 010769 268 SVLGLAWNKEFRNILASASADK----QVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-- 338 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg----~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd-- 338 (502)
.....+|+|+|..++++...+| .+.+|++..+ +.......+.......+|+|+|..++++...+|...+|.
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3456799999665555543333 3445777653 333333333344567899999944455555567655554
Q ss_pred CCCC-CCccceEeecCCeEEEEeCCCCCCEEEEEeCC--CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769 339 ARIS-THSGFKWAVAADVESLAWDPHAEHSFVVSLED--GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 339 ~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
+... ............+....|+|++..+++++..+ ..|.+||+.++. ...+......+....|+|+
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------~~~Lt~~~~~~~~p~wSpD 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------DYQLTTSPENKESPSWAID 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----------eEEccCCCCCccceEECCC
Confidence 4321 11221222334567889999988655555444 368999998762 2233333345678999999
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCC
Q 010769 416 VPNLLATGST--DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS 461 (502)
Q Consensus 416 ~~~~l~t~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~ 461 (502)
|..+++++.. ...|++|++..++...+.. ..+.+...+|+|-.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~---~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKIVI---GSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEeec---CCCcccCceecCCC
Confidence 8444444443 3568889998877433332 33556678888753
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=7.3e-09 Score=113.68 Aligned_cols=260 Identities=13% Similarity=0.147 Sum_probs=159.4
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+++++++-+..+.|++|+.... . ...+++.... ...... ....+-.....|++.+++..++++-..
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~-~---i~~ig~~g~~-------G~~dG~---~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGN-F---IVQIGSTGEE-------GLRDGS---FEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCC-E---EEEEccCCCc-------CCCCCc---hhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4667777778899999997532 1 1111110000 000000 001223446889999884434444455
Q ss_pred CCcEEEEECCCCeeeEEeccC-----------------CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce--
Q 010769 288 DKQVKIWDVAAGKCNLTLEHH-----------------TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-- 348 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-- 348 (502)
.+.|+++|+.++.. .++.+- -.....++++|++..++++.+.++.|++||...+......
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence 67899999877653 333110 1234679999965478888888999999998765432100
Q ss_pred ------------EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC----CCCCCccEEEec--------CC
Q 010769 349 ------------WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD----STSQQSSFTLHA--------HD 404 (502)
Q Consensus 349 ------------~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~--------h~ 404 (502)
...-.....++++|++..++++-+.++.|++||+.++..... .........+.. .-
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 001123567999998876777778889999999886521000 000000011100 11
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec-----------CCCCCEEEEEEcCCCCcEEEEEeCCCc
Q 010769 405 KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN-----------PKAGAVFSVAFSEDSPFVLAIGGSKGK 473 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~v~~~~~spd~~~llasg~~dg~ 473 (502)
....+++++++| .++++-+.++.|++||..++....+.... ........++++++|+ ++++-+.++.
T Consensus 804 ~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~ 881 (1057)
T PLN02919 804 QHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSL 881 (1057)
T ss_pred cCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCE
Confidence 124588999988 78888888999999999887633222111 1122467899999998 7888888999
Q ss_pred EEEEECCCCcc
Q 010769 474 LEIWDTLSDAG 484 (502)
Q Consensus 474 i~vwd~~~~~~ 484 (502)
|++||+.++..
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999998765
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=130.27 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=152.2
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 342 (502)
.|-..|.++.-+|. ..+.+||+.||.|++|....++.+..++ ..+..|+.+.|+.+| +.+..+..||.+.+|... +
T Consensus 2206 ~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred cccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-C
Confidence 35577888888888 4578899999999999998888877773 344899999999999 788899999999999987 3
Q ss_pred CCccceEeecCCeEEEEeCCCCCCEEEEE---eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769 343 THSGFKWAVAADVESLAWDPHAEHSFVVS---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 343 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
+.......|......++|-. . .+++. +.++.+.+||..... .....-..|.+.++++++.|.. .+
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~--------~~s~v~~~H~~gaT~l~~~P~~-ql 2350 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPP--------MNSLVHTCHDGGATVLAYAPKH-QL 2350 (2439)
T ss_pred cceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCc--------ccceeeeecCCCceEEEEcCcc-eE
Confidence 33322334555666666654 2 34443 467899999987652 2222338899999999999987 99
Q ss_pred EEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 420 LATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
|++||.+|.|++||++..+. ...++. +. ... .+++|+..|.|+||++..-..+......+
T Consensus 2351 lisggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEecCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcCchhh
Confidence 99999999999999998763 323221 44 334 58999999999999998887666554444
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.6e-09 Score=101.30 Aligned_cols=290 Identities=13% Similarity=0.159 Sum_probs=184.2
Q ss_pred ccccccccCCCceEEEEEecCCc--------ceeEEEEEecCCCCCCceeeeec--cccCCCcceeeeecCCCCCCCCCC
Q 010769 141 DLEDMTINPNDAVIVCARNEDDV--------SHLEVYILEESDGGDPNLYVHHH--IIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~--------~~l~v~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~w~~~~~~~s~~~~ 210 (502)
.|.-+.|||..++|++-+..-.. ..|.||....+.. +...+. ...+..|+ +. ||.+++
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l----krsF~~~~~~~~~WP~-fr-------WS~DdK 318 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL----KRSFPVIKSPYLKWPI-FR-------WSHDDK 318 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch----hcceeccCCCccccce-EE-------eccCCc
Confidence 46778888999999887644322 4667776665542 112221 11111121 23 489999
Q ss_pred EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec---
Q 010769 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA--- 287 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~--- 287 (502)
|+|.-+. ..|.||+......+. + +. -.-..|...+|+|. +++||--.-
T Consensus 319 y~Arm~~-~sisIyEtpsf~lld------~---------------Ks------lki~gIr~FswsP~-~~llAYwtpe~~ 369 (698)
T KOG2314|consen 319 YFARMTG-NSISIYETPSFMLLD------K---------------KS------LKISGIRDFSWSPT-SNLLAYWTPETN 369 (698)
T ss_pred eeEEecc-ceEEEEecCceeeec------c---------------cc------cCCccccCcccCCC-cceEEEEccccc
Confidence 9998776 578899876432221 1 00 12356888999998 667764322
Q ss_pred --CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEE----------ECCCcEEEEeCCCCCCccceEeecCCe
Q 010769 288 --DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG----------SFDRSVVMKDARISTHSGFKWAVAADV 355 (502)
Q Consensus 288 --Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~----------~~dg~i~vwd~~~~~~~~~~~~~~~~v 355 (502)
-..+.|-.+.+++.+++-..|.-.=..|.|-.+| .+|+.- +.=..+-|+.++....+.........|
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 2357777777887777776666555667787777 555432 222346678888877777777888899
Q ss_pred EEEEeCCCCCCEEEEEeC--CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE---eCCCcEE
Q 010769 356 ESLAWDPHAEHSFVVSLE--DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG---STDKMVK 430 (502)
Q Consensus 356 ~~v~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~---s~dg~i~ 430 (502)
...+|-|.|..+.+..+. ..++.+|-+.+.... ...+..+. ....+.+.|+|.| ++++.+ |..|.+.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-----~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-----PSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLE 520 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCc-----hhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceE
Confidence 999999998866555543 357889988753110 13333333 3667899999998 666654 4578899
Q ss_pred EEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCc
Q 010769 431 LWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS------KGKLEIWDTLSDA 483 (502)
Q Consensus 431 vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~------dg~i~vwd~~~~~ 483 (502)
++|+...... ......| ...+.+.|.|.|+| ++++++ |..-+||++...-
T Consensus 521 F~D~~~a~~k-~~~~~eh-~~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 521 FYDTDYADLK-DTASPEH-FAATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EEecchhhhh-hccCccc-cccccceECCCCCE-EEEeeehhhhccccceEEEEeecHH
Confidence 9999853311 1222223 34677899999998 555554 4457888886543
No 262
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.22 E-value=1.6e-10 Score=100.47 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=105.0
Q ss_pred CcEEEEEecCCcEEEEECCCCee-eEEecc-CCCCeEEEEEcCCCCcEEEEEE-----CCCcEEEEeCCCCCCccceEee
Q 010769 279 RNILASASADKQVKIWDVAAGKC-NLTLEH-HTDKVQAVAWNHHSPQILLSGS-----FDRSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 279 ~~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~-h~~~v~~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~ 351 (502)
.+-++++..||.+.+++.+.-.. .+.+.. |.+ -.+.++...+ +++.++. .-+..+.|+++..+........
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecc-cEEecCCcceEeeccceeeecccccccccccccc
Confidence 45799999999999999765211 111111 111 1222233333 3444332 1234566777654433322233
Q ss_pred cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769 352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
...|.+++-+|...+++++|+.+|.+.+||.|+. ..+...+.+|..+++.+-|+|..|..|++++.||.+..
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 3449999999998889999999999999999988 47777889999999999999999999999999999999
Q ss_pred EECCC
Q 010769 432 WDLSN 436 (502)
Q Consensus 432 wd~~~ 436 (502)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99875
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2e-09 Score=105.78 Aligned_cols=233 Identities=13% Similarity=0.285 Sum_probs=145.2
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
.|++| +....|+|+|+.||.++|..+.+...-....-|. .......-..+.||...|.-+.
T Consensus 18 ~c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla------------a~snLsmNQtLeGH~~sV~vvT 78 (1189)
T KOG2041|consen 18 HCAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA------------AASNLSMNQTLEGHNASVMVVT 78 (1189)
T ss_pred EEEEE-------cccCCeEEeccccceeEEEEccccCCcccccccc------------cccccchhhhhccCcceEEEEE
Confidence 48888 5778999999999999999886532211100000 1112333446789999999999
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCeeeEEe--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc----
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTL--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---- 347 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---- 347 (502)
|+.+ .+.|-|...+|.|.||-+-.|.-...+ ....+-|.+++|+.+| ..+.....||.|.+=.+...+....
T Consensus 79 WNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg 156 (1189)
T KOG2041|consen 79 WNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKG 156 (1189)
T ss_pred eccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcch
Confidence 9998 568889999999999999877654333 2245678999999999 7788888888776654432221100
Q ss_pred ------eE------------------------------------------eecCCeEEEEeC--------CCCCCEEEEE
Q 010769 348 ------KW------------------------------------------AVAADVESLAWD--------PHAEHSFVVS 371 (502)
Q Consensus 348 ------~~------------------------------------------~~~~~v~~v~~~--------p~~~~~l~~~ 371 (502)
.| ..+..+..+.|. |+.+ .|+++
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavc 235 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVC 235 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEE
Confidence 00 001113333443 2222 56666
Q ss_pred eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC---------cEEEEECCCCCeeEE
Q 010769 372 LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK---------MVKLWDLSNNQPSCI 442 (502)
Q Consensus 372 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg---------~i~vwd~~~~~~~~~ 442 (502)
..+|.+.+..-.+. ..|+..- ..-.+..+.|+++| ..|+.++.+. .|.+|..-. . .+
T Consensus 236 y~nGr~QiMR~eND--------~~Pvv~d--tgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G-~--i~ 301 (1189)
T KOG2041|consen 236 YANGRMQIMRSEND--------PEPVVVD--TGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYG-H--IV 301 (1189)
T ss_pred EcCceehhhhhcCC--------CCCeEEe--cccEeecceecCCC-cEEEEccCcccccCccccceEEEeccch-h--he
Confidence 66666665433332 1222221 22567889999998 8999888653 455554332 2 24
Q ss_pred EEecCCCCCEEEEEEcCCCC
Q 010769 443 ASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd~~ 462 (502)
.++......|++++|-..|-
T Consensus 302 gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 302 GTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred EEEecCCceeeeeEEcCCce
Confidence 44555556788888876653
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8.6e-09 Score=99.09 Aligned_cols=284 Identities=14% Similarity=0.176 Sum_probs=176.9
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec----
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS---- 216 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~---- 216 (502)
.....+++++|+++|.+..+ .++++..... . ..+..... - .+++.|||-|+||.+--
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~------~v~i~~~~~~---~-~~lt~~~~--~-------~~~L~fSP~g~yL~T~e~~~i 96 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQ------VVKVFEIATL---K-VVLCVELK--K-------TYDLLFSPKGNYLLTWEPWAI 96 (566)
T ss_pred cceeEEEcCCCcEEEEEcCC------eEEEEEccCC---c-EEEEeccc--e-------eeeeeeccccccccccccccc
Confidence 36778899999999988765 7777776654 1 11111111 1 22344588888888621
Q ss_pred ------CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 217 ------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 217 ------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
....+.+|++.++..... . ....+.. ++++|+.+ . .|++=-..+.
T Consensus 97 ~~~~~~~~pn~~v~~vet~~~~s~-~-------------------------q~k~Q~~-W~~qfs~d-E-sl~arlv~ne 147 (566)
T KOG2315|consen 97 YGPKNASNPNVLVYNVETGVQRSQ-I-------------------------QKKMQNG-WVPQFSID-E-SLAARLVSNE 147 (566)
T ss_pred ccCCCCCCCceeeeeeccceehhh-e-------------------------ehhhhcC-cccccccc-h-hhhhhhhcce
Confidence 124577898876211111 0 0012222 68899998 4 3444444578
Q ss_pred EEEEECCCCeeeEEeccCCCCeEEEEEcCCCC-cEEEE-----EECCCcEEEEeCCCCCC---ccceEeecCCeEEEEeC
Q 010769 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP-QILLS-----GSFDRSVVMKDARISTH---SGFKWAVAADVESLAWD 361 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s-----~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~v~~~ 361 (502)
|.+|++..-+.+. -.-|...|+.+.++|... ..+++ .+.-+.|+||....... .....-....-..+.|+
T Consensus 148 v~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN 226 (566)
T KOG2315|consen 148 VQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWN 226 (566)
T ss_pred EEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEec
Confidence 9999987743222 233678899999999843 33332 34556899998763221 11111223444567899
Q ss_pred CCCCCEEEEEeC-----------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE-EeCCCcE
Q 010769 362 PHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT-GSTDKMV 429 (502)
Q Consensus 362 p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t-~s~dg~i 429 (502)
+-+..+|+..+. ..+++++++... .....+ ...++|.++.|+|.+..+.++ |-.-..+
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKV 296 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEecCc---------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceE
Confidence 877766655542 235777777732 233333 257899999999998444443 4456789
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCcccccc
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS--KGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~--dg~i~vwd~~~~~~~~~~ 488 (502)
.|||++..- ++.+ ..++-+++-|+|.|++++++|-. .|.|.|||+.+.+++.+.
T Consensus 297 tifnlr~~~---v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 297 TIFNLRGKP---VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEEcCCCCE---eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 999997542 4443 45788899999999976655543 378999999998777554
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=5.6e-09 Score=91.40 Aligned_cols=238 Identities=15% Similarity=0.088 Sum_probs=152.1
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
+-.+||.|+..|...+|...+.+.... .-..|...|+-+.=..+...-+..++.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--------------------------~cd~snn~v~~~~r~cd~~~~~~i~sn 136 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--------------------------QCDVSNNDVTLVKRYCDLKFPLNIASN 136 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--------------------------eecccccchhhhhhhcccccceeeccC
Confidence 456899999999999999875433211 111232322222211121234667888
Q ss_pred CCcEEEEECCCCeeeEEeccCCC--CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---EeecCCeEEEEeCC
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTD--KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK---WAVAADVESLAWDP 362 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~v~~~p 362 (502)
|.++++.++..+.....+ |.. .+.++++++++ +++++.+....|.+|.+......... ......-.+..|+.
T Consensus 137 dht~k~~~~~~~s~~~~~--h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred CcceeEEEEecCccccee--eccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 999999988754332222 332 38899999998 89999999999999988765433222 12344567888998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC-EEEEEeCCCcEEEEECCCCCeeE
Q 010769 363 HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN-LLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~-~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
.+. .|++++.||++.|||+|...... .....+...|.+.+..+.|++.|+- +|...-.-+.+.|.|+++.+...
T Consensus 214 ~~~-~FAv~~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 214 NDL-QFAVVFQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred Ccc-eEEEEecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 655 89999999999999999863211 1112233458999999999986643 33333345779999999986433
Q ss_pred EEEec------CCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 442 IASRN------PKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 442 ~~~~~------~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
+.... .....|+...|+.++.. +.+.+.+ .+.=|++.+
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEecCccccccccccccccccccCCCcc-cccccch-hhheeeccc
Confidence 33322 22245888888888775 3333332 344555544
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=1.3e-08 Score=109.79 Aligned_cols=314 Identities=16% Similarity=0.247 Sum_probs=188.3
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEE--ecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYIL--EESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g 215 (502)
....|-++.+.++...|+++...| .|..+ +.... .....--..+..-..|++| |||+.+||..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~G-----di~~~~~~~~~~---~~~~E~VG~vd~GI~a~~W-------SPD~Ella~v 138 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASG-----DIILVREDPDPD---EDEIEIVGSVDSGILAASW-------SPDEELLALV 138 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCc-----eEEEEEccCCCC---CceeEEEEEEcCcEEEEEE-------CCCcCEEEEE
Confidence 456899999999999999999888 44444 22111 1111111234444589999 8999999999
Q ss_pred cCCCcEEEeeCCCCCCCCc-----------eeeeCCcchhhhhhccccCC-------cccc----ccccCCcccceeeEE
Q 010769 216 SMEPAIEIWDLDVIDEVQP-----------HVILGGIDEEKKKKKSKKGK-------KSSI----KYKKGSHTDSVLGLA 273 (502)
Q Consensus 216 ~~dg~I~iwdl~~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~-------~~~~----~~~~~~h~~~V~~l~ 273 (502)
+.+++|.+..-+- +.+.. ..+.-|.++...+.+.+..| .... ...+. +.+.-..|+
T Consensus 139 T~~~~l~~mt~~f-d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 139 TGEGNLLLMTRDF-DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred eCCCEEEEEeccc-eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 9999988765321 11110 00000000000000000000 0000 11222 556778899
Q ss_pred ecCCCCcEEEEEec---C---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEeCCCCCC
Q 010769 274 WNKEFRNILASASA---D---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRSVVMKDARISTH 344 (502)
Q Consensus 274 ~~~~~~~~l~sgs~---D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~ 344 (502)
|-.| +.++|+.+. . ..++||+ +.|....+...-.+--.+++|.|.| +++++.-. ...|.+|.-...+.
T Consensus 217 WRGD-G~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLrh 293 (928)
T PF04762_consen 217 WRGD-GEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLRH 293 (928)
T ss_pred ECCC-CcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcEe
Confidence 9999 457777764 2 5799999 4466555444344445678999999 77777654 34566776554333
Q ss_pred ccceE---eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEE
Q 010769 345 SGFKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 345 ~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l 420 (502)
-.... .....|..+.|++++. +|++...+. |++|-..+.. .-..+.+.. ....+..+.|+|..+..|
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 22222 2345789999999876 677766544 9999988752 122222322 223455599999887888
Q ss_pred EEEeCCCcEEEEEC----CCC----------------CeeEE--------------EEecCCCCCEEEEEEcCCCCcEEE
Q 010769 421 ATGSTDKMVKLWDL----SNN----------------QPSCI--------------ASRNPKAGAVFSVAFSEDSPFVLA 466 (502)
Q Consensus 421 ~t~s~dg~i~vwd~----~~~----------------~~~~~--------------~~~~~~~~~v~~~~~spd~~~lla 466 (502)
...+.+|.+..+++ ..+ ....+ ..+. -..+|..++|++++. .+|
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~a 442 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFA 442 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEE
Confidence 88887777765443 111 10111 1111 246799999999987 488
Q ss_pred EEeCCCcEEEEECCCC
Q 010769 467 IGGSKGKLEIWDTLSD 482 (502)
Q Consensus 467 sg~~dg~i~vwd~~~~ 482 (502)
+-..+|.|.+|.....
T Consensus 443 vl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEECCCCEEEEEecCC
Confidence 8899999999986543
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=3e-09 Score=96.17 Aligned_cols=235 Identities=15% Similarity=0.220 Sum_probs=168.4
Q ss_pred CCCCEEEEecCCCcEEEeeC-CCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 207 EKGNFMAVGSMEPAIEIWDL-DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
|...-+.+.+.|.++|||-- +.++.... .......+++++++++. ...|+.|
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wps--------------------------I~~~mP~~~~~~~y~~e-~~~L~vg 86 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPS--------------------------IYHYMPSPCSAMEYVSE-SRRLYVG 86 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCch--------------------------hhhhCCCCceEeeeecc-ceEEEEE
Confidence 45666889999999999953 22221111 11234578999999998 5588999
Q ss_pred ecCCcEEEEECC----CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeC
Q 010769 286 SADKQVKIWDVA----AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWD 361 (502)
Q Consensus 286 s~Dg~v~vwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~ 361 (502)
-..|++.-+.+. ....++....|...|..+-|+-.. ..+++.+.|..+.---.+.+.... ........+++.+.
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg-~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLG-GYNFETPASALQFD 164 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCccc-ceEeeccCCCCcee
Confidence 999999988654 445566677899999999998766 788888888876544444433322 11222222222222
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
- . +.++|...|.|..-.+.... ..++.++.+|...+.+++|.|.. ++|.+|..|..+.+||+...+. .
T Consensus 165 ~--~-~~fvGd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g-~ 232 (404)
T KOG1409|consen 165 A--L-YAFVGDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKG-T 232 (404)
T ss_pred e--E-EEEecccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcc-e
Confidence 1 1 45566667766665554332 37788999999999999999976 9999999999999999987653 4
Q ss_pred EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
.....+|...|..+...+--+ .|.+++.||.|.+|++....
T Consensus 233 ~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 233 AYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecccee
Confidence 667788889999988888777 58889999999999997544
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.17 E-value=1e-07 Score=90.77 Aligned_cols=249 Identities=11% Similarity=0.104 Sum_probs=144.7
Q ss_pred CCCCCEEEEecC----------CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec
Q 010769 206 REKGNFMAVGSM----------EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN 275 (502)
Q Consensus 206 s~~~~~la~g~~----------dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 275 (502)
||+++.|.++.. +..|.|||+.+......+.+-.. +.. ........++++
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-----------------p~~---~~~~~~~~~~ls 113 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-----------------PRF---LVGTYPWMTSLT 113 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-----------------chh---hccCccceEEEC
Confidence 899998887766 68999999987654433221100 000 012234578899
Q ss_pred CCCCcEEEEEe-c-CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc-eEee-
Q 010769 276 KEFRNILASAS-A-DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF-KWAV- 351 (502)
Q Consensus 276 ~~~~~~l~sgs-~-Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~- 351 (502)
|+++ +|+... . +..|.+.|+.+++.+..+.- .+...-...+... +.+-+.||.....-+........ ....
T Consensus 114 ~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~---~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDT---FFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCc---cEEEeecCceEEEEecCCCceEEeeeeee
Confidence 9965 555444 3 78999999999999988864 2222222332222 22333455544433322211110 0000
Q ss_pred -c--CCe-EEEEeCC-CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-------cCCCCeeEEEEcCCCCCE
Q 010769 352 -A--ADV-ESLAWDP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-------AHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 352 -~--~~v-~~v~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~~ 419 (502)
. ..+ ..-.|.+ ++ ..++++.. |.|.+.|+....... ..+...+. ...+.+.-++++|++.++
T Consensus 189 ~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~----~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKF----LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred cCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCccee----cceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 0 000 0003445 44 46666666 999999975542111 11111111 133444559999998444
Q ss_pred EEEEe---------CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCcccccc
Q 010769 420 LATGS---------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 420 l~t~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
++... ..+.|.++|..+.+. +..+.. ...+..++++||++ .++++...++.|.++|+.+++.+++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 44231 125799999998873 333332 35789999999999 65666657889999999999998876
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=2.8e-07 Score=84.68 Aligned_cols=290 Identities=12% Similarity=0.185 Sum_probs=176.7
Q ss_pred CCccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 137 EDSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
.+....+-|+|+|+.+.|-++...++.+.+..|.++...+ .|..-....++.-|.|- ++.+++|++|+++.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G---~Lt~ln~~~~~g~~p~y------vsvd~~g~~vf~An 107 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG---RLTFLNRQTLPGSPPCY------VSVDEDGRFVFVAN 107 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC---eEEEeeccccCCCCCeE------EEECCCCCEEEEEE
Confidence 3556788899999999999998887777888888887655 55555555566665442 22278999999987
Q ss_pred CC-CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe-cCCcEEEE
Q 010769 217 ME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS-ADKQVKIW 294 (502)
Q Consensus 217 ~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs-~Dg~v~vw 294 (502)
.. |.|.++-+.....+.+..-.-.+.. + ..... ..+.-+.+..+.|+++ +|+++. .--.|.+|
T Consensus 108 Y~~g~v~v~p~~~dG~l~~~v~~~~h~g----------~-~p~~r---Q~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y 172 (346)
T COG2706 108 YHSGSVSVYPLQADGSLQPVVQVVKHTG----------S-GPHER---QESPHVHSANFTPDGR-YLVVPDLGTDRIFLY 172 (346)
T ss_pred ccCceEEEEEcccCCccccceeeeecCC----------C-CCCcc---ccCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence 65 8999999865333322211100000 0 00000 1112277888999954 665553 33469999
Q ss_pred ECCCCeeeEEec---cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC-ccce---------EeecCCeEEEEeC
Q 010769 295 DVAAGKCNLTLE---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH-SGFK---------WAVAADVESLAWD 361 (502)
Q Consensus 295 d~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~---------~~~~~~v~~v~~~ 361 (502)
++..|+....-. .-......|.|||++.-..++.-.+++|.+|....... .... +........+..+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 999776432211 23456788999999944445556799999999876411 1111 1223457788999
Q ss_pred CCCCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-CCcEEEEECCC--C
Q 010769 362 PHAEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-DKMVKLWDLSN--N 437 (502)
Q Consensus 362 p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-dg~i~vwd~~~--~ 437 (502)
|+|+ +|+++ .....|.+|.+...... ...+.....+...-..+.|+|.+ ++|+++.. +.+|.+|.+.. +
T Consensus 253 ~dGr-FLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 253 PDGR-FLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CCCC-EEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcCCCc
Confidence 9987 45554 34457888887755210 12222333445557889999988 77777665 45688886654 4
Q ss_pred CeeEEEEecCCCCCEEEEEEc
Q 010769 438 QPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~~~~s 458 (502)
+...+.. ........|+.|.
T Consensus 326 ~L~~~~~-~~~~p~Pvcv~f~ 345 (346)
T COG2706 326 RLTLLGR-YAVVPEPVCVKFL 345 (346)
T ss_pred eEEeccc-ccCCCCcEEEEEc
Confidence 3222222 1233344566654
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=1.2e-09 Score=97.38 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=159.9
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCC-CCCceeeeCCcchhhhhhccccCCccccccccCCc------------ccceeeE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVID-EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH------------TDSVLGL 272 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~V~~l 272 (502)
...|.|||+|...|.|.+|.-.... +.. +....+++| ...|..+
T Consensus 35 d~tg~YlatGDkgGRVvlfer~~s~~cey-----------------------kf~teFQshe~EFDYLkSleieEKin~I 91 (460)
T COG5170 35 DETGLYLATGDKGGRVVLFEREKSYGCEY-----------------------KFFTEFQSHELEFDYLKSLEIEEKINAI 91 (460)
T ss_pred ccccceEeecCCCceEEEeecccccccch-----------------------hhhhhhcccccchhhhhhccHHHHhhhe
Confidence 5679999999999999999764321 111 111112222 3467888
Q ss_pred EecCC-CCcEEEEEecCCcEEEEECCCCe-------------------e-----------------------eEEe-ccC
Q 010769 273 AWNKE-FRNILASASADKQVKIWDVAAGK-------------------C-----------------------NLTL-EHH 308 (502)
Q Consensus 273 ~~~~~-~~~~l~sgs~Dg~v~vwd~~~~~-------------------~-----------------------~~~~-~~h 308 (502)
.|..+ +++.++..+.|.+|++|.+.... + .+.+ ..|
T Consensus 92 ~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH 171 (460)
T COG5170 92 EWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH 171 (460)
T ss_pred eeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc
Confidence 88654 56677778899999999875220 0 0011 347
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe--------ecCCeEEEEeCCCCCCEEEEEeCCCeEEEE
Q 010769 309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA--------VAADVESLAWDPHAEHSFVVSLEDGTIKGF 380 (502)
Q Consensus 309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~ 380 (502)
...|.++.++.+. ..++++ .|=.|.+|++........... ...-|++..|+|...+.|..++..|.|++-
T Consensus 172 ~yhiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 172 PYHINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eeEeeeeeecCch-heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 7788899999887 556554 477899999886554322221 123488999999877889999999999999
Q ss_pred ECCCCCCCCCCCCCCccE----------EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC-
Q 010769 381 DIRTAKSDPDSTSQQSSF----------TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA- 449 (502)
Q Consensus 381 d~~~~~~~~~~~~~~~~~----------~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~- 449 (502)
|+|........ ..++ -+..-.+.|+.+.|+++| +++++-.. -+|++||++..+. ++.+...|.
T Consensus 250 DlRq~alcdn~---~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~ 323 (460)
T COG5170 250 DLRQSALCDNS---KKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCD 323 (460)
T ss_pred hhhhhhhccCc---hhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccC-CceeechHHH
Confidence 99965321111 1111 112234678899999998 78877654 5799999987652 455554442
Q ss_pred -----------CCE---EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 450 -----------GAV---FSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 450 -----------~~v---~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
..| +.+.|+.+... +.+|+..+..-+|-+
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~-v~sgsy~NNfgiyp~ 366 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKH-VLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCccc-ccccccccceeeecc
Confidence 223 46788888875 777888777777764
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=1.1e-09 Score=98.99 Aligned_cols=206 Identities=13% Similarity=0.234 Sum_probs=140.4
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-----eeEEeccCC------------CCeEEEEEcCCCC-cEEE
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-----CNLTLEHHT------------DKVQAVAWNHHSP-QILL 326 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~-~~l~ 326 (502)
..+.|.++.|... +.+||+|..+|.|.++.-.... ....++.|. .+|..+.|.+++. ..++
T Consensus 24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 4577999999998 5699999999999999643222 233444443 4788999988763 4677
Q ss_pred EEECCCcEEEEeCCCCCCcc--------------------c----------------eEeecCCeEEEEeCCCCCCEEEE
Q 010769 327 SGSFDRSVVMKDARISTHSG--------------------F----------------KWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 327 s~~~dg~i~vwd~~~~~~~~--------------------~----------------~~~~~~~v~~v~~~p~~~~~l~~ 370 (502)
..+.|.+|++|.++...... . ...|...|++++++.+.. .+.
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t~l 180 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--TFL 180 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--eEe
Confidence 78889999999886432111 0 012345688899988765 445
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCee----E
Q 010769 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPS----C 441 (502)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~----~ 441 (502)
+..|=.|.+|++.-... .-.+.-+..+ +.-|++..|+|...++++-.+..|+|++.|++..... .
T Consensus 181 SADdLRINLWnlei~d~------sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQ------SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred eccceeeeeccccccCC------ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 56788999999876521 1112222223 2458899999987789999999999999999954310 0
Q ss_pred EEEe----------cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 442 IASR----------NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 442 ~~~~----------~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
++.. ..-...|..+.|+++|+| +++- .--+|+|||+..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGry-ilsR-Dyltvk~wD~nm 302 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSR-DYLTVKLWDLNM 302 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEe-ccceeEEEeccc
Confidence 1111 112346888999999997 4432 236899999944
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.1e-10 Score=111.22 Aligned_cols=210 Identities=19% Similarity=0.262 Sum_probs=143.7
Q ss_pred cccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCC-------CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC
Q 010769 260 YKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR 332 (502)
Q Consensus 260 ~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 332 (502)
..+.||+..|..++-..+ .+-++++|.|++|++|.++. ..|..+++.|..+|.++.|-.+. +.++ +.||
T Consensus 729 ~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDG 804 (1034)
T ss_pred ecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccC
Confidence 356799999999987666 67899999999999999863 34778889999999999998876 5554 5589
Q ss_pred cEEEEeCCCCCCccc-eE-eecCCeEEEEeCCC-CCCEEEEE-eCCCeEEEEECCCCCCCCCCCCCCccEEE---ecCCC
Q 010769 333 SVVMKDARISTHSGF-KW-AVAADVESLAWDPH-AEHSFVVS-LEDGTIKGFDIRTAKSDPDSTSQQSSFTL---HAHDK 405 (502)
Q Consensus 333 ~i~vwd~~~~~~~~~-~~-~~~~~v~~v~~~p~-~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~h~~ 405 (502)
.|.+||.-.++.... .+ ...+.+..+..-++ ...++++| +...+|+++|.|...- .+-+.. .+...
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-------~~E~kVcna~~Pna 877 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-------TCELKVCNAPGPNA 877 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-------eeeEEeccCCCCch
Confidence 999999866655432 22 11222222222222 22344444 7888999999997631 222222 33456
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEE-EECCCCcc
Q 010769 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEI-WDTLSDAG 484 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~v-wd~~~~~~ 484 (502)
.+.+++..+.| +.++++-..|+|.+.|.++++. +....+..-....++- |..++ |+....|.++.| |....+..
T Consensus 878 ~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqlaa-psdq~-L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 878 LTRAIAVADKG-NKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLAA-PSDQA-LAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred heeEEEeccCc-chhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhcC-chhHH-HHhhcccceeEeeehhcCCee
Confidence 68999999998 8999999999999999999973 3333333233333332 44453 666777778888 87766554
Q ss_pred c
Q 010769 485 I 485 (502)
Q Consensus 485 ~ 485 (502)
.
T Consensus 953 h 953 (1034)
T KOG4190|consen 953 H 953 (1034)
T ss_pred e
Confidence 3
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=5.3e-10 Score=110.20 Aligned_cols=220 Identities=19% Similarity=0.291 Sum_probs=157.1
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC--CcEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF--RNILA 283 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~ 283 (502)
+|.|+-+|.++.-|.. |-|++.. ..|...| ...-.-.|-.+.|+|.. ...++
T Consensus 33 ~p~grdi~lAsr~gl~-i~dld~p--~~ppr~l-----------------------~h~tpw~vad~qws~h~a~~~wiV 86 (1081)
T KOG0309|consen 33 NPSGRDIVLASRQGLY-IIDLDDP--FTPPRWL-----------------------HHITPWQVADVQWSPHPAKPYWIV 86 (1081)
T ss_pred ccccchhhhhhhcCeE-EEeccCC--CCCceee-----------------------eccCcchhcceecccCCCCceeEE
Confidence 6778888888877654 5577531 1111110 00112346677887752 22344
Q ss_pred EEecCCcEEEEECCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecCCeEEEE
Q 010769 284 SASADKQVKIWDVAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAADVESLA 359 (502)
Q Consensus 284 sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~v~ 359 (502)
+.+ ...-.+|++... ..-..+-+|+..|+.+.|+|+.+.++++++.|-.+..||+|++......+ ........|.
T Consensus 87 sts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 87 STS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVK 165 (1081)
T ss_pred ecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceee
Confidence 444 455678988643 33445578999999999999999999999999999999999987654333 4456678899
Q ss_pred eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
|+...++ +++.+....|++||+|.+ ..++..+.+|...|.++.|+......+.+++.|++|++||......
T Consensus 166 wnyk~p~-vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 166 WNYKDPN-VLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred ecccCcc-hhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc
Confidence 9988774 556666778999999998 6889999999999999999987667899999999999999977543
Q ss_pred eEEEEecCCCCCEEEEEEcCCCC
Q 010769 440 SCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
..... .....+|+.-.+.|-|.
T Consensus 237 e~~~~-vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 237 ESKRT-VTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cccee-ccccCcceeccccccCc
Confidence 22222 22345677777777553
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=2.4e-08 Score=87.44 Aligned_cols=202 Identities=13% Similarity=0.013 Sum_probs=137.8
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 358 (502)
.+||.|+..|...+|.+.+.+....+ ..|...|+-+.=.-+...-+..++.|.++++.++.............-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 48999999999999999876543332 33444343222112222346778888888888887554332222222337899
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE-EEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF-TLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
++++++. ++++.+....|..|.+..... ..+. ........-.+.+|+... ..+|+++.||++.|||++..
T Consensus 165 ~~snd~~-~~~~Vgds~~Vf~y~id~~se-------y~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 165 HYSNDPS-WGSSVGDSRRVFRYAIDDESE-------YIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred EEcCCCc-eEEEecCCCcceEEEeCCccc-------eeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEeccc
Confidence 9999866 788888889999999876521 2222 333444556788899876 89999999999999999986
Q ss_pred Cee---EEEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCCcccccccc
Q 010769 438 QPS---CIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 438 ~~~---~~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
... ...+...|.|.+..+.|++.|.. ||...-.-+.+.|-|+++......+..
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 532 22345678999999999987642 344344457899999999887665443
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=1.3e-09 Score=117.14 Aligned_cols=187 Identities=17% Similarity=0.244 Sum_probs=140.2
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME 218 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d 218 (502)
-+.|.++.=+|...+.++|+.++ .+++|.|..+. .+++...... +.... ..|+.+|+.+.++..|
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dg---sv~~~~w~~~~----~v~~~rt~g~-s~vtr-------~~f~~qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDG---SVRMFEWGHGQ----QVVCFRTAGN-SRVTR-------SRFNHQGNKFGIVDGD 2272 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCc---eEEEEeccCCC----eEEEeeccCc-chhhh-------hhhcccCCceeeeccC
Confidence 35688899999999999999887 56777776554 4444443222 22222 2347789999999999
Q ss_pred CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe---cCCcEEEEE
Q 010769 219 PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS---ADKQVKIWD 295 (502)
Q Consensus 219 g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs---~Dg~v~vwd 295 (502)
|.+.+|... +++....+.|......+.|-. ..+++++ .++.+.+||
T Consensus 2273 g~l~l~q~~----------------------------pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2273 GDLSLWQAS----------------------------PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred CceeecccC----------------------------CcceeccccCCccccceeeee---hhhhccccCCCCCcccchh
Confidence 999999986 222233456888888888875 3666664 468899999
Q ss_pred CCCC---eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEe
Q 010769 296 VAAG---KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSL 372 (502)
Q Consensus 296 ~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 372 (502)
..-. .++. ..|.+.++++++-|.. ++|++|+.+|.|++||++..+....... ++ ...+|++|+
T Consensus 2322 tl~~~~~s~v~--~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~s 2387 (2439)
T KOG1064|consen 2322 TLLPPMNSLVH--TCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGS 2387 (2439)
T ss_pred cccCcccceee--eecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccC
Confidence 6532 2333 7799999999999999 9999999999999999998766543222 33 245899999
Q ss_pred CCCeEEEEECCCC
Q 010769 373 EDGTIKGFDIRTA 385 (502)
Q Consensus 373 ~dg~i~i~d~~~~ 385 (502)
..|.++||++...
T Consensus 2388 s~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEF 2400 (2439)
T ss_pred cccceEEEEcccc
Confidence 9999999999876
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=5e-08 Score=93.70 Aligned_cols=282 Identities=14% Similarity=0.213 Sum_probs=164.3
Q ss_pred cccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC---
Q 010769 142 LEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME--- 218 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d--- 218 (502)
-+-+.|||-|.+|++-...| +.+|-=..-.. ..-+.|. .+.++++ ||..+||+|-+..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G----I~lWGG~~f~r--~~RF~Hp---------~Vq~idf----SP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG----IALWGGESFDR--IQRFYHP---------GVQFIDF----SPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeEEecCCceEEEEEeccc----eeeecCccHHH--HHhccCC---------Cceeeec----CCccceEEEecCCccc
Confidence 46689999999999998775 45553221110 0111121 3344333 8999999986643
Q ss_pred --------CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 219 --------PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 219 --------g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
..|+|||+.++..+..+.++. +....-.-+.||.+ ..++|.-.. .+
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~------------------------~~~~~WP~frWS~D-dKy~Arm~~-~s 327 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIK------------------------SPYLKWPIFRWSHD-DKYFARMTG-NS 327 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccC------------------------CCccccceEEeccC-CceeEEecc-ce
Confidence 468999999877665544321 11112234579988 567776665 57
Q ss_pred EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC-----CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
|.||+..+-.++-.-.-.-..|....|+|.+ ++|+-=.- -..+.+-.+.+.+.+....-+.-.-..+.|..+|.
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 9999876533322212234578888999987 66553221 11233333333332221111111122344555444
Q ss_pred CEEEE----------EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC--CCcEEEEE
Q 010769 366 HSFVV----------SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST--DKMVKLWD 433 (502)
Q Consensus 366 ~~l~~----------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~--dg~i~vwd 433 (502)
+|++ .+.-..+.|+.++.. ..++..+. -...|...+|-|.|.++.+..+. ..++.+|-
T Consensus 407 -yLcvkvdR~tK~~~~g~f~n~eIfrireK--------dIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 407 -YLCVKVDRHTKSKVKGQFSNLEIFRIREK--------DIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred -EEEEEEEeeccccccceEeeEEEEEeecc--------CCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEE
Confidence 2222 122234667777765 24444443 45678999999999555444443 35688888
Q ss_pred CCC--CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEE--eCCCcEEEEECCC
Q 010769 434 LSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIG--GSKGKLEIWDTLS 481 (502)
Q Consensus 434 ~~~--~~~~~~~~~~~~~~~v~~~~~spd~~~llasg--~~dg~i~vwd~~~ 481 (502)
+.+ .++.++..+.. ...+.+.|+|.|+++++.+ |..|.+.++|+.-
T Consensus 477 ~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 477 VETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 874 33444444443 5678899999999865544 3478999999975
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=6.1e-07 Score=80.08 Aligned_cols=237 Identities=15% Similarity=0.200 Sum_probs=134.5
Q ss_pred ccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCc--ceeeeecCCCCCCCCCCEEEEecCCCcEE
Q 010769 145 MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFP--LCMAWLDCPLKDREKGNFMAVGSMEPAIE 222 (502)
Q Consensus 145 ~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~w~~~~~~~s~~~~~la~g~~dg~I~ 222 (502)
+..+++|++||+.... .|+|..-...-. .....-..+-..+| -.++| ||++.+||.+...|+|+
T Consensus 3 ~~~~~~Gk~lAi~qd~----~iEiRsa~Ddf~---si~~kcqVpkD~~PQWRkl~W-------SpD~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ----CIEIRSAKDDFS---SIIGKCQVPKDPNPQWRKLAW-------SPDCTLLAYAESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEEecc----EEEEEeccCCch---heeEEEecCCCCCchheEEEE-------CCCCcEEEEEcCCCeEE
Confidence 5667899999888644 467765554333 33232232333333 13444 99999999999999999
Q ss_pred EeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-----CcEEEEEecCCcEEEEECC
Q 010769 223 IWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF-----RNILASASADKQVKIWDVA 297 (502)
Q Consensus 223 iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~~~l~sgs~Dg~v~vwd~~ 297 (502)
+||+...... .+.++ . .....-..+|..|.|.+.. ...|+.-...|.++-|-+.
T Consensus 69 vfdl~g~~lf---~I~p~---------------~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 69 VFDLMGSELF---VIPPA---------------M---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEecccceeE---EcCcc---------------c---ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 9998642211 11000 0 0011234677778775542 2356667778888877653
Q ss_pred C-----CeeeEEec---cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEE
Q 010769 298 A-----GKCNLTLE---HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFV 369 (502)
Q Consensus 298 ~-----~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~ 369 (502)
. .+..++|. .+...|.++.|+|.. ++|++|+.... ..+. .......+++-+.-.+.+.+..
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEE
Confidence 2 23344442 357799999999998 67777665332 0000 0111222332222222232222
Q ss_pred EEe-CCCe------EEEEECCCCCCCCCCCCCCccEEE-ecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769 370 VSL-EDGT------IKGFDIRTAKSDPDSTSQQSSFTL-HAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 370 ~~~-~dg~------i~i~d~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
+.. .++. ..+|.+-+ ...+.. ......|..|..||+| .+||+...+|.|.+|++.+-+
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~----------~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPS----------FKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccccCccccccccccceeeccc----------eeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence 222 2221 11222211 111111 2245679999999999 999999999999999998765
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=3.5e-07 Score=90.82 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=120.6
Q ss_pred ceeeEEecCCCCcEEEEEec---CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEeCCCC
Q 010769 268 SVLGLAWNKEFRNILASASA---DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARIS 342 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~---Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~ 342 (502)
.+....|+|++..+++..+. ...|.++|+.+++...... ..+......|+|+|..++++.+.+ ..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 67789999996654554333 3569999998886544433 455667788999996666666555 45777787766
Q ss_pred CCccceEeecCCeEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769 343 THSGFKWAVAADVESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 343 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
.... ............|+|+|..+++++...| .|+++|+.++. . ..+..... ....|+|+|..++
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---------~-~rlt~~g~--~~~~~SPDG~~Ia 334 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---------V-EQVVFHGK--NNSSVSTYKNYIV 334 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---------e-EeCccCCC--cCceECCCCCEEE
Confidence 5332 2223333445689999987777765555 47777776552 1 11111111 1248999994444
Q ss_pred EEEeCC--------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEECCC
Q 010769 421 ATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLS 481 (502)
Q Consensus 421 ~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~~~ 481 (502)
++.... ..|.+.|+.++....+.. . +......|+|||+.++.+....+. |.+.++..
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCeEECCC---C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 444332 368888988887433322 1 223358899999976555544444 55666644
No 279
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=9.3e-08 Score=95.32 Aligned_cols=241 Identities=16% Similarity=0.158 Sum_probs=162.6
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCC-------
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF------- 278 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~------- 278 (502)
+| +.+||.|+. ..|.|-|..+.+.+ ..+..|...|+.+.|.|..
T Consensus 24 ~~-~GLiAygsh-slV~VVDs~s~q~i---------------------------qsie~h~s~V~~VrWap~~~p~~llS 74 (1062)
T KOG1912|consen 24 SP-SGLIAYGSH-SLVSVVDSRSLQLI---------------------------QSIELHQSAVTSVRWAPAPSPRDLLS 74 (1062)
T ss_pred Cc-cceEEEecC-ceEEEEehhhhhhh---------------------------hccccCccceeEEEeccCCCchhccC
Confidence 55 447788765 56777776543322 2344688999999998742
Q ss_pred ----CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEeCCCCCCccceEee
Q 010769 279 ----RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 279 ----~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 351 (502)
..+||++...|.|.+||...+..+..+..|..+++.++|-+.. ..+|++-....+|.+|+..+++..-.....
T Consensus 75 ~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 75 PSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 2367888889999999999999999999999999999997532 257888888899999999988754322223
Q ss_pred cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-------------------------C
Q 010769 352 AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-------------------------A 406 (502)
Q Consensus 352 ~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-------------------------~ 406 (502)
.....|+.+.|.+...|...+..|.|.+.+.-.......+ .+..+.-..|.. .
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 3456679999988878888888888888776544322111 111111111211 1
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCC--CcEEEEEeCCCcEEEEECCC
Q 010769 407 VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDS--PFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 407 v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~--~~llasg~~dg~i~vwd~~~ 481 (502)
...++|+|.-.+.+.. .....+.|+|+.-.....+..+. .+.+.-+.|-|++ . .|.+.-.+|.+.+|-.+.
T Consensus 233 ~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd-~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRD-ALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcc-eEEEEecCCeEEEEEeec
Confidence 2235778876444443 34566999999988744444444 3444456666654 4 588899999999998765
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.5e-08 Score=90.49 Aligned_cols=274 Identities=13% Similarity=0.277 Sum_probs=166.4
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCC--CCce---eeeeccc--------cCCCcceeeeecCCCC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGG--DPNL---YVHHHII--------IPAFPLCMAWLDCPLK 204 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~--~~~l---~~~~~~~--------~~~~~~~~~w~~~~~~ 204 (502)
..+-|+++.|..+|.+|++|-..| +|-.|...... +-.+ +..|+.. +......+.|..-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgG-----RVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~--- 96 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGG-----RVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD--- 96 (460)
T ss_pred ccceeeEEEeccccceEeecCCCc-----eEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC---
Confidence 467899999999999999997766 56555543321 0011 1223222 2223456777531
Q ss_pred CCCCCCEEEEecCCCcEEEeeCCCCCC--CCceee-------eCCc-chhhhhh--ccccCC----ccccccccCCcccc
Q 010769 205 DREKGNFMAVGSMEPAIEIWDLDVIDE--VQPHVI-------LGGI-DEEKKKK--KSKKGK----KSSIKYKKGSHTDS 268 (502)
Q Consensus 205 ~s~~~~~la~g~~dg~I~iwdl~~~~~--~~~~~~-------l~~~-~~~~~~~--~~~~~~----~~~~~~~~~~h~~~ 268 (502)
.+.+.++..+.|.+|++|.+..... +....+ .++. ...+... ...... ....+.....|+-.
T Consensus 97 --t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 97 --TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred --CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 2345666777899999999853211 000000 0000 0000000 000000 01112233578899
Q ss_pred eeeEEecCCCCcEEEEEecCCcEEEEECCCCe---eeEEeccCC-----CCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGK---CNLTLEHHT-----DKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~---~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
|.+++|+.+ ...+++ +.|-.|.+|++.... .+.-++.|. .-|++..|+|.....+.-.+..|.|++.|+|
T Consensus 175 iNSiS~NsD-~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNSD-KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecCc-hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 999999998 445554 456789999987532 222334443 4688999999987889999999999999999
Q ss_pred CCCCccc----------------eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC
Q 010769 341 ISTHSGF----------------KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD 404 (502)
Q Consensus 341 ~~~~~~~----------------~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~ 404 (502)
....... +......|..+.|++.|. ++.+..--+|++||++.. ..|+.++..|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsRdyltvkiwDvnm~--------k~pikTi~~h~ 322 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSRDYLTVKIWDVNMA--------KNPIKTIPMHC 322 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEeccceEEEEecccc--------cCCceeechHH
Confidence 5332110 011234577889999765 445555678999999988 47788776653
Q ss_pred C------------Ce---eEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 405 K------------AV---CTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 405 ~------------~v---~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
. .| ..+.|+.+. ..+++|+..+..-+|-.
T Consensus 323 ~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 323 DLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecc
Confidence 1 22 346777766 77888888777777753
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=1e-06 Score=78.62 Aligned_cols=195 Identities=15% Similarity=0.241 Sum_probs=115.6
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-------CCCCeEEEEEcCCC-----CcEEEEEECCCcEE
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-------HTDKVQAVAWNHHS-----PQILLSGSFDRSVV 335 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~ 335 (502)
.-.-++|+|+ ..+||.+...|+|+++|+.... +..+.. -+..|..|.|.+.. ...|++-.+.|.++
T Consensus 45 QWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECCC-CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 4567999999 6699999999999999987533 333321 23566777675432 24677888899888
Q ss_pred EEeCCCCCCccc----eE----eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769 336 MKDARISTHSGF----KW----AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 336 vwd~~~~~~~~~----~~----~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
-|-+..+..... .+ .....|.++.|+|... +|++|+.... ... . -.+....+
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~------~~~----------~---s~a~~~GL 182 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQN------QDG----------M---SKASSCGL 182 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCC------CCc----------c---ccccccCc
Confidence 887643221111 11 2356899999999755 6666543221 000 0 01122233
Q ss_pred eEEEEcCCCCCEEEEEeC-CCc------EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 408 CTISYNPLVPNLLATGST-DKM------VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~-dg~------i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
++-....+.|.+..+.+. ++. ..+|.+-+.+ ...........|..|..||||. +||+...+|.|.+|++-
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~--~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK--FFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIP 259 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeecccee--eeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecC
Confidence 333333333333322222 221 2344433322 1111223456799999999999 69999999999999998
Q ss_pred CCccccc
Q 010769 481 SDAGISN 487 (502)
Q Consensus 481 ~~~~~~~ 487 (502)
+-.+.+.
T Consensus 260 sL~~~~~ 266 (282)
T PF15492_consen 260 SLRLQRS 266 (282)
T ss_pred cchhhcc
Confidence 7766544
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.7e-07 Score=93.47 Aligned_cols=300 Identities=12% Similarity=0.113 Sum_probs=192.3
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCC---CCCC--CCEE
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLK---DREK--GNFM 212 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~---~s~~--~~~l 212 (502)
+.....++.|+|.| +||.|+.. -|.+.+...-+......+|. +....+.|.+...- +||. .-+|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs------lV~VVDs~s~q~iqsie~h~----s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS------LVSVVDSRSLQLIQSIELHQ----SAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred CcccccccccCccc-eEEEecCc------eEEEEehhhhhhhhccccCc----cceeEEEeccCCCchhccCccccceeE
Confidence 44557889999998 45555533 45555544332222223443 45578899765433 2332 4467
Q ss_pred EEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCC---CCcEEEEEecCC
Q 010769 213 AVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKE---FRNILASASADK 289 (502)
Q Consensus 213 a~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~~l~sgs~Dg 289 (502)
|++...|.|.+||+.. ......+..|.++|..++|-+. .+.+|+.-....
T Consensus 83 AsaD~~GrIil~d~~~---------------------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss 135 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVL---------------------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS 135 (1062)
T ss_pred EeccccCcEEEEEehh---------------------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc
Confidence 8888889999999864 2223345578899999998653 346777777788
Q ss_pred cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC---ccceE----eecC---------
Q 010769 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH---SGFKW----AVAA--------- 353 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~----~~~~--------- 353 (502)
+|.+|+..+|+.............|+.+.|-..+.+..-+..|.+.+.+.-.... ....+ .|..
T Consensus 136 ~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 136 TLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred EEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 9999999999999888777778888999998877777777788887776532211 11111 1100
Q ss_pred ----------------CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769 354 ----------------DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 354 ----------------~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
-...++|+|+-.+.++.. -...+.++|+.-. .++.......+.+.-+.+.|+..
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~---------~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYE---------CCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhh---------ceeEEEEeccCCcceeEeccCCC
Confidence 012356788766555544 4677899999865 56666666667677777877653
Q ss_pred -CEEEEEeCCCcEEEEECCCCCee---------------EEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 418 -NLLATGSTDKMVKLWDLSNNQPS---------------CIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 418 -~~l~t~s~dg~i~vwd~~~~~~~---------------~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
..|++...||.+.+|-.+..... +-.......-.+.....+|..+..++.--++|.+.+|.+++
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 47888889999999976542100 00000111223344455666444555556788899999987
Q ss_pred Cccc
Q 010769 482 DAGI 485 (502)
Q Consensus 482 ~~~~ 485 (502)
++.-
T Consensus 366 ~ri~ 369 (1062)
T KOG1912|consen 366 GRIH 369 (1062)
T ss_pred CCcC
Confidence 6543
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=6.9e-07 Score=98.41 Aligned_cols=168 Identities=9% Similarity=0.153 Sum_probs=112.5
Q ss_pred eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc---------------CCCCeEEEEEcCCCCcEEEEEECCCc
Q 010769 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH---------------HTDKVQAVAWNHHSPQILLSGSFDRS 333 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~---------------h~~~v~~l~~~~~~~~~l~s~~~dg~ 333 (502)
-.+|+++|+++.++++.+.++.|++||..++... .+.+ .-.....|+++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 4589999965778888888999999999877543 2211 11245679999998557777788899
Q ss_pred EEEEeCCCCCCccce------------Ee---------ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCC
Q 010769 334 VVMKDARISTHSGFK------------WA---------VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDST 392 (502)
Q Consensus 334 i~vwd~~~~~~~~~~------------~~---------~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 392 (502)
|++||+.++...... +. .-.....+++++++. ++++-+.++.|++||..+........
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEec
Confidence 999999865421100 00 011246788999875 77888889999999987652100000
Q ss_pred CCCc----cEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 393 SQQS----SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 393 ~~~~----~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
.... -....++-.....++++++| +++++-+.++.|++||+.+++.
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 0000 00011222356789999998 8888888999999999988763
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=4.6e-08 Score=90.59 Aligned_cols=162 Identities=14% Similarity=0.160 Sum_probs=110.9
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEe---cC
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVG---SM 217 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g---~~ 217 (502)
.......+|.+++||++.... ..-+..|..... .........++.-|..+.++ .....+.++ +.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K---~~~~f~~~~~~~---~~kl~~~~~v~~~~~ai~~~-------~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK---QRAVFDYRENPK---GAKLLDVSCVPKRPTAISFI-------REDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCC---ceEEEEEecCCC---cceeeeEeecccCcceeeee-------eccceEEEEeecCC
Confidence 345667889999999998876 233555554442 12222222334444444443 223333333 33
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
...+.+|....+ .....-||-..++.|+|+|+ ..+|+++..|..|+|-...
T Consensus 131 ~~~~di~s~~~~----------------------------~~~~~lGhvSml~dVavS~D-~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 131 VYSFDILSADSG----------------------------RCEPILGHVSMLLDVAVSPD-DQFIITADRDEKIRVSRYP 181 (390)
T ss_pred ceeeeeeccccc----------------------------CcchhhhhhhhhheeeecCC-CCEEEEecCCceEEEEecC
Confidence 345556655421 11123489999999999999 5699999999999998887
Q ss_pred CCeeeEEe-ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769 298 AGKCNLTL-EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 346 (502)
Q Consensus 298 ~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 346 (502)
..-.+.+| -||+..|..++.-++. .|++|+.|++|++||+++++...
T Consensus 182 a~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 182 ATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred cccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecccCCccc
Confidence 77677776 4699999999998764 69999999999999999988763
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=4.1e-06 Score=90.68 Aligned_cols=304 Identities=16% Similarity=0.257 Sum_probs=184.9
Q ss_pred CccccccccccCCCceEEEEEecCCcc-eeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVS-HLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~-~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
.++.-..++|..||.++|+.+.+.... .-.+.+|+.. + .|....+ .+++..-+++| .|.|++||+..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE-~v~gLe~~l~W-------rPsG~lIA~~q 275 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSE-PVDGLEGALSW-------RPSGNLIASSQ 275 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c---eEEeccc-cCCCccCCccC-------CCCCCEEEEEE
Confidence 455778899999999999998743322 2344445443 2 4443333 55666677888 78999999986
Q ss_pred C---CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 217 M---EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 217 ~---dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
. ...|.+|.-+... .......+......|..|+||++ +.+||....|. |.+
T Consensus 276 ~~~~~~~VvFfErNGLr------------------------hgeF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~~-vqL 329 (928)
T PF04762_consen 276 RLPDRHDVVFFERNGLR------------------------HGEFTLRFDPEEEKVIELAWNSD-SEILAVWLEDR-VQL 329 (928)
T ss_pred EcCCCcEEEEEecCCcE------------------------eeeEecCCCCCCceeeEEEECCC-CCEEEEEecCC-ceE
Confidence 5 3456666644211 11222222345678999999999 66888877655 999
Q ss_pred EECCCCe--eeEEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC----CCCC--------c-------------
Q 010769 294 WDVAAGK--CNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR----ISTH--------S------------- 345 (502)
Q Consensus 294 wd~~~~~--~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~----~~~~--------~------------- 345 (502)
|-..+-. ..+.+.. ....+..+.|+|..+..|...+.+|.+..+++. .... .
T Consensus 330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF 409 (928)
T ss_pred EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence 9887653 2233321 234455699999988888888887777665432 1100 0
Q ss_pred ----------cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE----------EecCCC
Q 010769 346 ----------GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT----------LHAHDK 405 (502)
Q Consensus 346 ----------~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~h~~ 405 (502)
.........|..++|++.+. .+++-..+|.|.+|........... ....... ......
T Consensus 410 ~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 487 (928)
T PF04762_consen 410 RRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVK-PPKLLSSISLDSMDISDSELPLG 487 (928)
T ss_pred cccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCccccc-Ccchhhhcccccccccccccccc
Confidence 01123457799999999765 5888889999999986543211000 0011111 112244
Q ss_pred CeeEEEEcCCCCCEEEEEeCC---CcEEEEECCCCC-eeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 406 AVCTISYNPLVPNLLATGSTD---KMVKLWDLSNNQ-PSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~d---g~i~vwd~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
.+..++|.... .+++....+ ..+.++++.... ...+.......+.+..+...+... .++.-..+|.+...+...
T Consensus 488 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 488 SLRQLAWLNDD-TLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cEEEEEEeCCC-EEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCC
Confidence 57788888765 555554443 568888875433 223333344456666666666655 355567788888666554
Q ss_pred Cc
Q 010769 482 DA 483 (502)
Q Consensus 482 ~~ 483 (502)
..
T Consensus 566 ~~ 567 (928)
T PF04762_consen 566 EL 567 (928)
T ss_pred Cc
Confidence 43
No 286
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.5e-08 Score=92.23 Aligned_cols=220 Identities=15% Similarity=0.179 Sum_probs=140.0
Q ss_pred ccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769 261 KKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 261 ~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
.+.+|...|.+|+|+|....+|..++.+.+|+|.|+.+..++..+..+ ..+++++|.-+..+++.+|-.+|.|.+||+|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 344788999999999996668999999999999999999999999877 8899999999998999999999999999999
Q ss_pred CCCCccceE---eecCCeEEEEeCC------CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE
Q 010769 341 ISTHSGFKW---AVAADVESLAWDP------HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS 411 (502)
Q Consensus 341 ~~~~~~~~~---~~~~~v~~v~~~p------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 411 (502)
......... ....+|..++.-+ .+. +++.... .+..|.+...... ..++. .....+.+.+++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~-----~p~vl-ele~pG~cismq 337 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAEC-----LPCVL-ELEPPGICISMQ 337 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccC-----CCccc-ccCCCcceeeee
Confidence 876543222 1223444443322 222 3333322 2456665543211 11111 122356667777
Q ss_pred EcCCCCCEEEEEeCCCc------EEE-EECCCCCeeEEEEecCC-CC---CE---EEEEEcCCCCcEEEEEeCCCcEEEE
Q 010769 412 YNPLVPNLLATGSTDKM------VKL-WDLSNNQPSCIASRNPK-AG---AV---FSVAFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 412 ~sp~~~~~l~t~s~dg~------i~v-wd~~~~~~~~~~~~~~~-~~---~v---~~~~~spd~~~llasg~~dg~i~vw 477 (502)
+.+....+|+|.-.+.+ |-+ -|...+.+.+.... .+ .+ ++ ..+.-.++..+++.+|+..+.+.+|
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 77765566666554321 111 12233333322221 11 11 11 1222345667788888888899999
Q ss_pred ECCCCccccccccC
Q 010769 478 DTLSDAGISNRFSK 491 (502)
Q Consensus 478 d~~~~~~~~~~~~~ 491 (502)
|+.+.+.++++.-.
T Consensus 417 D~~s~evvQ~l~~~ 430 (463)
T KOG1645|consen 417 DPHSFEVVQTLALS 430 (463)
T ss_pred ccchhheeeecccC
Confidence 99999988765443
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=9.6e-07 Score=83.55 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=131.4
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC-cEEEEeCCCCCCccceEeec
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~ 352 (502)
|++-.+.+++..|. |...|.+...+-.++. +|...|.-..+..++ .-++.|..|| .+-++|.+++.... ....-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL 401 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEE-eeCCc
Confidence 45545678888887 7788887665544432 466778888887777 5789999999 99999999876543 44556
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC----c
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----M 428 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----~ 428 (502)
+.|.++..+|+|. .++++.....|.++|+.++ .+...-....+-|+.+.|+|++ +++|-+--+| .
T Consensus 402 g~I~av~vs~dGK-~~vvaNdr~el~vididng---------nv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~ 470 (668)
T COG4946 402 GNIEAVKVSPDGK-KVVVANDRFELWVIDIDNG---------NVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQS 470 (668)
T ss_pred cceEEEEEcCCCc-EEEEEcCceEEEEEEecCC---------CeeEecccccceeEEEEEcCCc-eeEEEecCcceeeee
Confidence 7899999999876 7888888899999999987 3444444566789999999998 8998876665 5
Q ss_pred EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEE
Q 010769 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAI 467 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llas 467 (502)
|+++|+..++..-+.+ ..+.=.+-+|.|+++||..-
T Consensus 471 Iklydm~~~Kiy~vTT---~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 471 IKLYDMDGGKIYDVTT---PTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEEecCCCeEEEecC---CcccccCcccCCCCcEEEEE
Confidence 8999999987433333 33445667899999986543
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=7.5e-09 Score=93.72 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=122.4
Q ss_pred EEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCC
Q 010769 316 AWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 395 (502)
Q Consensus 316 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 395 (502)
+|+-.-.-+-++.+.+..|.+-++.++-... +...+.|.++.|...++ ++..|+.+|.|..+|+|...... ..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--f~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~----~~ 290 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--FQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN----GW 290 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--cccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC----Cc
Confidence 5653322233566677888898988765443 44778899999988655 89999999999999999863211 23
Q ss_pred ccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEE--EEEcCCCCcEEEEEeCCC
Q 010769 396 SSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFS--VAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 396 ~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~--~~~spd~~~llasg~~dg 472 (502)
+... .-|.+.|+++..-.....+|++.+.+|+|++||++.-+. ..+.+..+|...-.- +...+... .++++|.|.
T Consensus 291 ~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDc 368 (425)
T KOG2695|consen 291 CAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDC 368 (425)
T ss_pred ceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCee
Confidence 3333 348999999987774448899999999999999997662 126777777543322 23345555 477799999
Q ss_pred cEEEEECCCCccccccccCCCCC
Q 010769 473 KLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 473 ~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
..|||.+..+..+.+....+..+
T Consensus 369 ytRiWsl~~ghLl~tipf~~s~~ 391 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYSAS 391 (425)
T ss_pred EEEEEecccCceeeccCCCCccc
Confidence 99999999999988766555443
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=2.8e-06 Score=80.48 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=135.4
Q ss_pred cccCCCceEEEEEecCCcceeEEEEEecCCCCCCceee----eeccccCCCcceeeeecCCCCCC-CCCCEEEEecCCCc
Q 010769 146 TINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYV----HHHIIIPAFPLCMAWLDCPLKDR-EKGNFMAVGSMEPA 220 (502)
Q Consensus 146 ~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~w~~~~~~~s-~~~~~la~g~~dg~ 220 (502)
..+.+|+.|+..... .||.|+........|-. ......+.+...+.++. -|+ .+|+++|..+. |.
T Consensus 273 ~~nsDGkrIvFq~~G------dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyle---dfa~~~Gd~ia~VSR-Gk 342 (668)
T COG4946 273 NANSDGKRIVFQNAG------DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLE---DFAVVNGDYIALVSR-GK 342 (668)
T ss_pred ccCCCCcEEEEecCC------cEEEeCCCcCcceeeecCCccccccccccccCHHHhhh---hhccCCCcEEEEEec-Cc
Confidence 345678888766533 89999987762222211 11122223333333332 123 36999998876 77
Q ss_pred EEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC-cEEEEECCCC
Q 010769 221 IEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK-QVKIWDVAAG 299 (502)
Q Consensus 221 I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg-~v~vwd~~~~ 299 (502)
..|.+...+-.+ ..+|...|.-..+..+. .-++.|..|| .+-|+|..++
T Consensus 343 aFi~~~~~~~~i-----------------------------qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 343 AFIMRPWDGYSI-----------------------------QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred EEEECCCCCeeE-----------------------------EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCc
Confidence 777665322111 12577778888888774 4788999999 8999999887
Q ss_pred eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCC----
Q 010769 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDG---- 375 (502)
Q Consensus 300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg---- 375 (502)
+.. .+...-+.|.++..+++| .+++++.....|.+.|+.++.....-....+-|+.+.|+|++. +++-+--+|
T Consensus 393 e~k-r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq 469 (668)
T COG4946 393 EVK-RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQ 469 (668)
T ss_pred eEE-EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeee
Confidence 754 444567889999999999 8899999899999999999887665555667799999999876 666655444
Q ss_pred eEEEEECCCCC
Q 010769 376 TIKGFDIRTAK 386 (502)
Q Consensus 376 ~i~i~d~~~~~ 386 (502)
.|++||+..++
T Consensus 470 ~Iklydm~~~K 480 (668)
T COG4946 470 SIKLYDMDGGK 480 (668)
T ss_pred eEEEEecCCCe
Confidence 58888887643
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.3e-08 Score=92.61 Aligned_cols=250 Identities=13% Similarity=0.134 Sum_probs=166.3
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
..+++.+++.||.++.|.-... ........+..|...|.+++.+-+ +.+++|++.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~i------------------------sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d 73 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRI------------------------SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVED 73 (558)
T ss_pred hhheEEeeecchhhhhcCCCCc------------------------cceeehhhhHHHHHHHHhhhcccc-ceeEeeccC
Confidence 4789999999999999964321 112334455678899999999988 568888777
Q ss_pred -CCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCcc--ceEeecCCeEEEEe
Q 010769 288 -DKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHSG--FKWAVAADVESLAW 360 (502)
Q Consensus 288 -Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~v~~ 360 (502)
|..++++|+.+-..+.-++. -.+.+. +..++... .+.++...++.+.++|-+...+.. ....|..+|.++.+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 99999999987654433321 122222 12222211 233344567899999988765433 23357889999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEECCCC-C-----CCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 361 DPHAEHSFVVSLEDGTIKGFDIRTA-K-----SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 361 ~p~~~~~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
+|.+. .+++....|.|..|..... + .........-++.+.-......++.|+|++ ..+.+-+.|..|+++.+
T Consensus 153 ~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 153 NQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVF 230 (558)
T ss_pred ecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEe
Confidence 99776 6888888999999998741 1 111111122233334455678999999998 88999999999999999
Q ss_pred CCCCeeEEEE------------------------------ecCC-CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 435 SNNQPSCIAS------------------------------RNPK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 435 ~~~~~~~~~~------------------------------~~~~-~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
++++...... +..| ...-+.+.|...+.|||. |+-= .|+|.++.++.
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly-~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY-GTIL-GIKVINLDTNT 308 (558)
T ss_pred ccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe-ecce-eEEEEEeecCe
Confidence 8875311000 0011 123456789999997554 4444 49999999988
Q ss_pred cccc
Q 010769 484 GISN 487 (502)
Q Consensus 484 ~~~~ 487 (502)
.++-
T Consensus 309 v~ri 312 (558)
T KOG0882|consen 309 VVRI 312 (558)
T ss_pred EEEE
Confidence 7654
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=7.6e-06 Score=75.73 Aligned_cols=220 Identities=14% Similarity=0.099 Sum_probs=139.6
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec-CCCCcEEEEEe
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN-KEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~sgs 286 (502)
++.++++-...+.|..|+....... ... .....++++. ++ + .|+.+.
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~--------------------------~~~----~~~~~G~~~~~~~-g-~l~v~~ 58 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE--------------------------VID----LPGPNGMAFDRPD-G-RLYVAD 58 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE--------------------------EEE----SSSEEEEEEECTT-S-EEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE--------------------------EEe----cCCCceEEEEccC-C-EEEEEE
Confidence 6888888888899999998642110 011 1126777777 55 4 555555
Q ss_pred cCCcEEEEECCCCeeeEEecc-----CCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEeCCCCCCccceEeecC
Q 010769 287 ADKQVKIWDVAAGKCNLTLEH-----HTDKVQAVAWNHHSPQILLSGSFD--------RSVVMKDARISTHSGFKWAVAA 353 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~ 353 (502)
.. .+.++|+.+++....+.. .....+.+++.++| ++.++.... |.|..++.. .+ .......-.
T Consensus 59 ~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~ 134 (246)
T PF08450_consen 59 SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLG 134 (246)
T ss_dssp TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEES
T ss_pred cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcc
Confidence 54 456669998865443332 34567899999999 677766544 456666666 33 333444456
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
..+.++|+|++..++++-+..+.|..|++......... ......+....+..-.+++..+| ++.++....+.|.+++
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN--RRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFD 211 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE--EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEE
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceee--eeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEEC
Confidence 67899999998766667788999999999754110000 01111222222347889999988 7777777889999999
Q ss_pred CCCCCeeEEEEecCCCCCEEEEEE-cCCCCcEEEEEe
Q 010769 434 LSNNQPSCIASRNPKAGAVFSVAF-SEDSPFVLAIGG 469 (502)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~llasg~ 469 (502)
.. ++........ ...+++++| -++...|++|..
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence 88 6644444443 347999999 467666676653
No 292
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=8.3e-08 Score=97.37 Aligned_cols=186 Identities=15% Similarity=0.211 Sum_probs=136.0
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
++..++.|+....+..+|+.+...... ..-....|.-++.+ ..+|.+|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---------------------------~~v~a~~v~imR~N---nr~lf~G~t 195 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---------------------------TNVSASGVTIMRYN---NRNLFCGDT 195 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---------------------------eeccCCceEEEEec---CcEEEeecc
Confidence 466677777777777888865322111 11122236666554 348999999
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC---------CCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---------DRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~v 358 (502)
.|+|.+-|+++.+.++++..|++.|..+..+ | ++|++++. |..|+|||+|.-+..... .......-+
T Consensus 196 ~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~P~fl 271 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYGPQFL 271 (1118)
T ss_pred cceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccCchhh
Confidence 9999999999999999999999999877664 5 78888876 456899999987765432 223334667
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 359 AWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 359 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.|+|.-...+++.+..|...+.|..+.... ...+..+......+..+.+++++ ..|+.|..+|.|.+|-
T Consensus 272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhcccccceEEEEecccceeeccccccCCC-----ccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 889987778999999999999995544210 12334444455669999999998 9999999999999997
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.84 E-value=7e-06 Score=81.23 Aligned_cols=228 Identities=15% Similarity=0.139 Sum_probs=136.8
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceee-EEecCCCCcEEEEEe
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLG-LAWNKEFRNILASAS 286 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~sgs 286 (502)
++..+++++.+|.+..+|..+++.+..... ...+.+ ... . ...++.++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----------------------------~~~~~~~p~v--~-~~~v~v~~ 152 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL----------------------------SSEVLSPPLV--A-NGLVVVRT 152 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc----------------------------CceeecCCEE--E-CCEEEEEC
Confidence 477888899999999999876554321100 011111 111 1 23677788
Q ss_pred cCCcEEEEECCCCeeeEEeccCCCCeE-----EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-eecC---Ce--
Q 010769 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQ-----AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AVAA---DV-- 355 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~-----~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~---~v-- 355 (502)
.+|.|..||..+|+.+..+......+. +.... + ..++.+..++.+..+|.++++..-... .... .+
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 899999999999998877654322111 11111 2 357778888999999998876432110 0000 00
Q ss_pred -EEEEeCC--CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769 356 -ESLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 356 -~~v~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
..+.-+| .+ ..+++++.+|.++.||..++ +.++..... ........ + ..+++++.+|.|..+
T Consensus 230 ~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG---------~~~W~~~~~--~~~~p~~~--~-~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 230 LVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSG---------RVLWKRDAS--SYQGPAVD--D-NRLYVTDADGVVVAL 294 (377)
T ss_pred hhccCCccEEEC-CEEEEEEcCCEEEEEECCCC---------cEEEeeccC--CccCceEe--C-CEEEEECCCCeEEEE
Confidence 0000011 12 36788888999999999887 445544421 11222222 3 678888899999999
Q ss_pred ECCCCCeeEEEEecC-CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769 433 DLSNNQPSCIASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 433 d~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
|..+++. +..... ......+... .+. .|++++.+|.|+++|..+++.+.+..
T Consensus 295 d~~tG~~--~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 295 DRRSGSE--LWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred ECCCCcE--EEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 9998873 333311 1111222222 244 47778999999999999998876544
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=8.3e-08 Score=88.92 Aligned_cols=160 Identities=15% Similarity=0.212 Sum_probs=108.0
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc---eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 010769 314 AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 390 (502)
Q Consensus 314 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 390 (502)
.+..++.+ .+++++..+....+++++....... ........+++.|..... ...++..-|-++-+|+-...
T Consensus 67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~---- 140 (390)
T KOG3914|consen 67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD---- 140 (390)
T ss_pred ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-eEEEEeecCCceeeeeeccc----
Confidence 34455555 7777777777776777665443111 112233344555544433 34444444545555544321
Q ss_pred CCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769 391 STSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 391 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~llasg~ 469 (502)
..+...+.+|-+.++.++|+|++ .+|+|+..|..|++-.+.... .+.. .-+|...|..++.-++. +|++||
T Consensus 141 ---~~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f--~IesfclGH~eFVS~isl~~~~--~LlS~s 212 (390)
T KOG3914|consen 141 ---SGRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF--VIESFCLGHKEFVSTISLTDNY--LLLSGS 212 (390)
T ss_pred ---ccCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc--chhhhccccHhheeeeeeccCc--eeeecC
Confidence 13345567899999999999998 999999999999998776543 2222 34689999999998876 488999
Q ss_pred CCCcEEEEECCCCccccc
Q 010769 470 SKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 470 ~dg~i~vwd~~~~~~~~~ 487 (502)
.|++|++||+.+++++..
T Consensus 213 GD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDT 230 (390)
T ss_pred CCCcEEEEecccCCcccc
Confidence 999999999999998844
No 295
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.83 E-value=1.8e-08 Score=87.90 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=123.3
Q ss_pred eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE------------EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 010769 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL------------TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVM 336 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 336 (502)
|+.+.+..+ ..|+++..++.+.....-++.+.. .+..|+++-.+-..+-.+ +-+++++.||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEEE
Confidence 566666655 478888888777776655444332 222233322222222233 56899999999999
Q ss_pred EeCCCCCCccceEe-ecCCeEEEEeCCCCCCEEEEEe-----CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE
Q 010769 337 KDARISTHSGFKWA-VAADVESLAWDPHAEHSFVVSL-----EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI 410 (502)
Q Consensus 337 wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 410 (502)
++.+.-........ ......+.+....+. ++.++. .-+..+.|+++... ........- ..|+++
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~--------t~~~~~~~~-~~v~~l 185 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIK--------TLIPSKKAL-DAVTAL 185 (319)
T ss_pred EechHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccc--------ccccccccc-ccchhh
Confidence 99876211111110 011111222222222 232221 22345566665431 122222222 339999
Q ss_pred EEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 411 SYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 411 ~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
+-+|...+++++|+.||.+.+||+++.. .....+..|..+|+.+.|+|..+--|.+++.||.+..||.++
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999887899999999999999999874 345566789999999999998766688999999999999875
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.8e-08 Score=93.10 Aligned_cols=212 Identities=17% Similarity=0.133 Sum_probs=153.6
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCC--C-eeeEEeccCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEeC
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAA--G-KCNLTLEHHTDKVQAVAWNHHSPQILLSGSF-DRSVVMKDA 339 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~ 339 (502)
-|.+.|+.+.-... .++++++.||.++.|.-.. + ..+..+..|-..|.+++.+.++ .++.|++. |..++++|+
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEe
Confidence 48888888876654 6999999999999998543 1 3445567788899999999998 88888777 999999999
Q ss_pred CCCCCccceEeecCCeEEEEe--CCCCC--CEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769 340 RISTHSGFKWAVAADVESLAW--DPHAE--HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~v~~--~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
..-..... .....-...+.| +|... .+.+....+|.+.++|-+...+ +....-.-|..+|.++.++|.
T Consensus 84 En~Dminm-iKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 84 ENFDMINM-IKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred eccchhhh-cccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEEEEeecc
Confidence 87665431 111111222233 22111 2333345789999999887632 455666779999999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CC-e-----------eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 416 VPNLLATGSTDKMVKLWDLSN-NQ-P-----------SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~-~~-~-----------~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
+ ..+++....|.|.-|.... .+ | .-+..+....+...++.|+|++.. +++-+.|..|+++.+.++
T Consensus 156 ~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 156 G-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred c-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccc
Confidence 8 8888888899999998873 00 0 012222334456789999999995 888889999999999999
Q ss_pred cccccc
Q 010769 483 AGISNR 488 (502)
Q Consensus 483 ~~~~~~ 488 (502)
+.++.+
T Consensus 234 klvqei 239 (558)
T KOG0882|consen 234 KLVQEI 239 (558)
T ss_pred hhhhhh
Confidence 987654
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.4e-08 Score=92.01 Aligned_cols=176 Identities=18% Similarity=0.263 Sum_probs=125.8
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC----CCccce
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS----THSGFK 348 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~ 348 (502)
+|+-+-..+-++.+.+..|-+-++.+|.. +.|. ..+.|.++.|+..+ ++++.|..+|.|..+|+|.. .-....
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 66543222335667778899999988753 3444 57789999999877 89999999999999999976 334456
Q ss_pred EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE--EcCCCCCEEEEEeCC
Q 010769 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS--YNPLVPNLLATGSTD 426 (502)
Q Consensus 349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~~~~~l~t~s~d 426 (502)
.-|.+.|+++..-.....++++++.+|.|.+||+|..+. ...+.+..+|-..-.-+- ..+.. ..+++++.|
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdD 367 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDD 367 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccccccccccccccc-ceEEEccCe
Confidence 678899999987764556899999999999999998632 234777788865433332 33433 788889999
Q ss_pred CcEEEEECCCCCeeEEEEecCC--CCCEEEEEEc
Q 010769 427 KMVKLWDLSNNQPSCIASRNPK--AGAVFSVAFS 458 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~s 458 (502)
...+||.+..+...+...+... ...+.+++|.
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceehh
Confidence 9999999999984433333221 1235556664
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=4.9e-06 Score=82.69 Aligned_cols=192 Identities=9% Similarity=0.019 Sum_probs=112.4
Q ss_pred CCCCCCCE-EEEecCC---CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCC
Q 010769 204 KDREKGNF-MAVGSME---PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFR 279 (502)
Q Consensus 204 ~~s~~~~~-la~g~~d---g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 279 (502)
.|+|+|+. ++..+.. ..|.++|+.++... . +....+.+....|+|++.
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-------------------------~---lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-------------------------K---IASSQGMLVVSDVSKDGS 245 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-------------------------E---EecCCCcEEeeEECCCCC
Confidence 34899984 6654433 56888887643210 0 111234455678999977
Q ss_pred cEEEEEecC--CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCCe
Q 010769 280 NILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAADV 355 (502)
Q Consensus 280 ~~l~sgs~D--g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v 355 (502)
.++++.+.+ ..|.++++.+++. ..+..+........|+|+|..++++....+ .|.+.|+.++........ +.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-
Confidence 666666555 4577778877764 344434433455689999966666655544 577777776654332221 11
Q ss_pred EEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769 356 ESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 356 ~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
....|+|++..+++++... ..|.+.|+.++. ...+... .......|+|+|..++++....+
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----------~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----------IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----------eEECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence 1248999998666666543 367888887652 2223222 23346889999944444433333
Q ss_pred --cEEEEECCCCC
Q 010769 428 --MVKLWDLSNNQ 438 (502)
Q Consensus 428 --~i~vwd~~~~~ 438 (502)
.+.+.++....
T Consensus 391 ~~~L~~~~l~g~~ 403 (419)
T PRK04043 391 QSALGIIRLNYNK 403 (419)
T ss_pred cEEEEEEecCCCe
Confidence 35666766543
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.79 E-value=7.1e-06 Score=81.21 Aligned_cols=259 Identities=12% Similarity=0.113 Sum_probs=144.7
Q ss_pred CCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCC
Q 010769 150 NDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVI 229 (502)
Q Consensus 150 ~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~ 229 (502)
++..+++++.++ .+|.++...+ .+.-.+. ++..+.+. +. -.+..+++++.+|.|..||..++
T Consensus 104 ~~~~v~v~~~~g-----~l~ald~~tG---~~~W~~~--~~~~~~~~------p~--v~~~~v~v~~~~g~l~a~d~~tG 165 (377)
T TIGR03300 104 DGGLVFVGTEKG-----EVIALDAEDG---KELWRAK--LSSEVLSP------PL--VANGLVVVRTNDGRLTALDAATG 165 (377)
T ss_pred cCCEEEEEcCCC-----EEEEEECCCC---cEeeeec--cCceeecC------CE--EECCEEEEECCCCeEEEEEcCCC
Confidence 456677776666 7788876554 2221111 11111110 00 12557777888999999999765
Q ss_pred CCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCC
Q 010769 230 DEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHT 309 (502)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~ 309 (502)
+.+..... ............+ ... + ..++.++.++.+..+|+.+|+.+.......
T Consensus 166 ~~~W~~~~------------------~~~~~~~~~~~sp----~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 166 ERLWTYSR------------------VTPALTLRGSASP----VIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred ceeeEEcc------------------CCCceeecCCCCC----EEE-C--CEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 54322110 0000000011111 111 2 267788888999999999998765543110
Q ss_pred C----C------e-EEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC-CeEEEEeCCCCCCEEEEEeCCCeE
Q 010769 310 D----K------V-QAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA-DVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 310 ~----~------v-~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~dg~i 377 (502)
. . + .+..+ .+ ..+++++.+|.+..||..+++.. |.... ....... .+ ..+++++.+|.|
T Consensus 221 ~~g~~~~~~~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~---W~~~~~~~~~p~~--~~-~~vyv~~~~G~l 291 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVL---WKRDASSYQGPAV--DD-NRLYVTDADGVV 291 (377)
T ss_pred CCCCCchhhhhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEE---EeeccCCccCceE--eC-CEEEEECCCCeE
Confidence 0 0 0 01111 13 46777888999999999877543 22211 1111222 23 367888899999
Q ss_pred EEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE-EE
Q 010769 378 KGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF-SV 455 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~ 455 (502)
+.+|..++ ..++..... .....+.... + ..|++++.+|.|+++|..+++. +.....+...+. +.
T Consensus 292 ~~~d~~tG---------~~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~~tG~~--~~~~~~~~~~~~~sp 357 (377)
T TIGR03300 292 VALDRRSG---------SELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPP 357 (377)
T ss_pred EEEECCCC---------cEEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCccccCC
Confidence 99999887 444444221 1222222232 3 6888999999999999999884 444444443332 22
Q ss_pred EEcCCCCcEEEEEeCCCcEEEE
Q 010769 456 AFSEDSPFVLAIGGSKGKLEIW 477 (502)
Q Consensus 456 ~~spd~~~llasg~~dg~i~vw 477 (502)
.+. ++. |..++.||.|+.|
T Consensus 358 ~~~-~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 358 VVV-GDG--LLVQTRDGDLYAF 376 (377)
T ss_pred EEE-CCE--EEEEeCCceEEEe
Confidence 333 343 5667889988765
No 300
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.77 E-value=5.8e-09 Score=101.74 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=154.6
Q ss_pred ceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEE
Q 010769 194 LCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLA 273 (502)
Q Consensus 194 ~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 273 (502)
-|++|.. ..+.-.+++|..+|.|.+-.+.... ........+|...+++++
T Consensus 60 kcva~~y-----~~d~cIlavG~atG~I~l~s~r~~h-------------------------dSs~E~tp~~ar~Ct~lA 109 (783)
T KOG1008|consen 60 KCVASFY-----GNDRCILAVGSATGNISLLSVRHPH-------------------------DSSAEVTPGYARPCTSLA 109 (783)
T ss_pred eeehhhc-----CCchhhhhhccccCceEEeecCCcc-------------------------cccceecccccccccccc
Confidence 4777631 2345689999999999998774311 111122346889999999
Q ss_pred ecCCCCcEEEEEe----cCCcEEEEECCCC--eee--EEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769 274 WNKEFRNILASAS----ADKQVKIWDVAAG--KCN--LTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 274 ~~~~~~~~l~sgs----~Dg~v~vwd~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 344 (502)
|++-..+.||.|- .|..+.|||+.++ .+. ..|.+ .-....+++|-.+. .++++|...+.+.++|+|....
T Consensus 110 wneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 110 WNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred cccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh
Confidence 9998778888873 3668999999876 222 22222 33456689999666 8899999999999999995332
Q ss_pred ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE-CCCCCCCCCCCCCCccEEEecCC----CCeeEEEEcCCCCCE
Q 010769 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDPDSTSQQSSFTLHAHD----KAVCTISYNPLVPNL 419 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~sp~~~~~ 419 (502)
.. ..-....+..+...|..++++++. .+|.|.+|| .++. ..++..+.... ..+..++|+|..+.+
T Consensus 189 ~~-~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 189 SV-SSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hh-hhhhhhhcccceecCCCCCceecc-ccCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 21 111222455566777656555554 499999999 4544 23333333222 348999999988788
Q ss_pred EEEEeCC-CcEEEEECCCC--------CeeEEEE----ecCC--CCCEEEEEEcCCCC-cEEEEEeCCCcEEEEEC
Q 010769 420 LATGSTD-KMVKLWDLSNN--------QPSCIAS----RNPK--AGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 420 l~t~s~d-g~i~vwd~~~~--------~~~~~~~----~~~~--~~~v~~~~~spd~~-~llasg~~dg~i~vwd~ 479 (502)
+++.+.| ++|+++++... .+..... +.+. -..|.++.|++..+ ....++-..-++.-+++
T Consensus 259 la~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred hhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 8888875 67999998642 1111111 2222 25688888887652 12333444444444444
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=1.4e-07 Score=93.22 Aligned_cols=199 Identities=18% Similarity=0.267 Sum_probs=141.3
Q ss_pred ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe---------------eeEEeccCCCCeEEEEEcCCCCcEEEEEEC
Q 010769 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK---------------CNLTLEHHTDKVQAVAWNHHSPQILLSGSF 330 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 330 (502)
.....|++|+.. ..++|+|+.||.++|..+.+.. .-+++.+|+..|.-+.|+... +.|.++..
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDT 91 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCC
Confidence 356889999998 6699999999999999876431 124567999999999999988 88999999
Q ss_pred CCcEEEEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee
Q 010769 331 DRSVVMKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408 (502)
Q Consensus 331 dg~i~vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~ 408 (502)
+|.|.+|-+-.++-... .....+-|.+++|+.+|. .+.....||.|.+=.+... .++..........
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN----------RIwgKeLkg~~l~ 160 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN----------RIWGKELKGQLLA 160 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc----------eecchhcchhecc
Confidence 99999999876653221 224456789999999876 6888888998877666532 2332222233455
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCC-----eeEEEE----ecCCCCCEEEEEEc--------CCCCcEEEEEeCC
Q 010769 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQ-----PSCIAS----RNPKAGAVFSVAFS--------EDSPFVLAIGGSK 471 (502)
Q Consensus 409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~-----~~~~~~----~~~~~~~v~~~~~s--------pd~~~llasg~~d 471 (502)
.+.|+++. ..++.+-..|.+.+||...+- ..+... +......|..+.|. |+.+ .||.+-.+
T Consensus 161 hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~n 238 (1189)
T KOG2041|consen 161 HVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYAN 238 (1189)
T ss_pred ceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcC
Confidence 78899987 777777778999999976531 112111 11112235566663 5777 68888888
Q ss_pred CcEEEEEC
Q 010769 472 GKLEIWDT 479 (502)
Q Consensus 472 g~i~vwd~ 479 (502)
|.+.|-.-
T Consensus 239 Gr~QiMR~ 246 (1189)
T KOG2041|consen 239 GRMQIMRS 246 (1189)
T ss_pred ceehhhhh
Confidence 88776543
No 302
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.71 E-value=4.4e-05 Score=73.00 Aligned_cols=242 Identities=11% Similarity=0.092 Sum_probs=130.7
Q ss_pred cccCCCceEEEEEe---------cCCcceeEEEEEecCCCCCCceeeeeccccCCCccee-eeecCCCCCCCCCCEEEEe
Q 010769 146 TINPNDAVIVCARN---------EDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCM-AWLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 146 ~~~p~~~~l~~~~~---------~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~w~~~~~~~s~~~~~la~g 215 (502)
.++|+++.|.++.. +.+ .+.| |+... +..-+++.++.-|-.. .-.+..++++|+|++|.+.
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d--~V~v--~D~~t-----~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTD--YVEV--IDPQT-----HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCC--EEEE--EECcc-----CcEEeEEccCCCchhhccCccceEEECCCCCEEEEe
Confidence 39999999988887 443 3444 44443 2334444444333200 0011123348999999987
Q ss_pred cC--CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 216 SM--EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 216 ~~--dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
.. +..|.|.|+.....+....+ .+...-...++. .++ +-+.||....
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~v----------------------------p~~~~vy~t~e~-~~~--~~~~Dg~~~~ 171 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDV----------------------------PDCYHIFPTAND-TFF--MHCRDGSLAK 171 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeC----------------------------CCCcEEEEecCC-ccE--EEeecCceEE
Confidence 74 58999999976433322111 111111112221 111 2234444444
Q ss_pred EECCC-Cee-eEE---eccCCCCeEEE-EEcC-CCCcEEEEEECCCcEEEEeCCCCCCcc-ceEe-----------ecCC
Q 010769 294 WDVAA-GKC-NLT---LEHHTDKVQAV-AWNH-HSPQILLSGSFDRSVVMKDARISTHSG-FKWA-----------VAAD 354 (502)
Q Consensus 294 wd~~~-~~~-~~~---~~~h~~~v~~l-~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-----------~~~~ 354 (502)
..+.. |+. ..+ |..-..++..- .|.+ ++ ..+.+... |+|.+.|+....... ..+. ..+.
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 33321 221 111 11100011000 3455 55 55655555 999999975433211 1111 1233
Q ss_pred eEEEEeCCCCCCEEEEEe---------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe-
Q 010769 355 VESLAWDPHAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS- 424 (502)
Q Consensus 355 v~~v~~~p~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s- 424 (502)
..-++++|++..+++... ..+.|.++|..+. +.+..+.. ...+..++++|++..+|++..
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEEeCC
Confidence 445999998875555342 2257999999886 56666553 457899999999842666554
Q ss_pred CCCcEEEEECCCCCe
Q 010769 425 TDKMVKLWDLSNNQP 439 (502)
Q Consensus 425 ~dg~i~vwd~~~~~~ 439 (502)
.++.|.++|..+.+.
T Consensus 320 ~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 320 GDKTLYIFDAETGKE 334 (352)
T ss_pred CCCcEEEEECcCCeE
Confidence 688899999999873
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=4.9e-07 Score=91.97 Aligned_cols=183 Identities=17% Similarity=0.242 Sum_probs=139.6
Q ss_pred CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEE
Q 010769 279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESL 358 (502)
Q Consensus 279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v 358 (502)
+..++.|+.-..+..+|+++.+..+......+.|+-++.+. +++.+|...|+|.+-|.++.+.+.....|.+.+..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nn---r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNN---RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecC---cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 34677888888899999999888777765555677666543 789999999999999999999888888899888877
Q ss_pred EeCCCCCCEEEEEeC---------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769 359 AWDPHAEHSFVVSLE---------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 359 ~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
... |. ++++++. |..|++||+|+. +.+..+.-+.++ .-+.|+|.-...+++++..|..
T Consensus 224 Dv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm---------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 224 DVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM---------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred ecc--CC-eEEEeecccccccccccchhhhhhhhhh---------hccCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 665 34 5666553 556899999987 333333334443 5578888877889999999999
Q ss_pred EEEE---CCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 430 KLWD---LSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 430 ~vwd---~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
.+-| +.+.. ..+.........+.++.+++++. .||.|..+|.|.+|--
T Consensus 291 q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 291 QFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeccccccCCCc-cceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 9999 43332 23444555555699999999999 5999999999999983
No 304
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.4e-07 Score=90.47 Aligned_cols=232 Identities=16% Similarity=0.268 Sum_probs=144.4
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
.+.+-+++++.|.+|++|.+..... ..+.......+..|+.+|.++.|..+.+ +++ |
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD--------------------~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~--S 801 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGD--------------------EIGTSACQFTYQAHKKPIHDIGFLADLR-SIA--S 801 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccC--------------------ccccceeeeEhhhccCcccceeeeeccc-eee--e
Confidence 3577889999999999999864211 1122334566778999999999998833 454 5
Q ss_pred cCCcEEEEECCCCeeeEEecc--CCCCeEEEEEcCC-CCcEEEEE-ECCCcEEEEeCCCCCCccceEe-----ecCCeEE
Q 010769 287 ADKQVKIWDVAAGKCNLTLEH--HTDKVQAVAWNHH-SPQILLSG-SFDRSVVMKDARISTHSGFKWA-----VAADVES 357 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~ 357 (502)
.||.|.+||.-.++++..+.. ..+.+..+..-+. ...++++| +...+|+++|.|...-...... ...-+.+
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 689999999888877664421 1223333333333 22444444 7789999999998765432221 2345789
Q ss_pred EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE-EECCC
Q 010769 358 LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL-WDLSN 436 (502)
Q Consensus 358 v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v-wd~~~ 436 (502)
++..+.|. .++++-.+|+|.+.|.|++ +.+..+.........++ .|.. ..|+....|.++.| |-.-.
T Consensus 882 iaVa~~GN-~lAa~LSnGci~~LDaR~G---------~vINswrpmecdllqla-apsd-q~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 882 IAVADKGN-KLAAALSNGCIAILDARNG---------KVINSWRPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEeccCcc-hhhHHhcCCcEEEEecCCC---------ceeccCCcccchhhhhc-Cchh-HHHHhhcccceeEeeehhcC
Confidence 99998765 7999999999999999998 33333333222233332 2333 67777777888888 87666
Q ss_pred CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 010769 437 NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWD 478 (502)
Q Consensus 437 ~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd 478 (502)
+. ...+..+...+..-+ -.-|+. |+++.....+.||-
T Consensus 950 gi--mh~q~kpppepahfl--qsvgpS-LV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 950 GI--MHLQDKPPPEPAHFL--QSVGPS-LVTAQNGNILGVYA 986 (1034)
T ss_pred Ce--eeeccCCCCcchhhh--hccCce-eEEeccCcEEEEEe
Confidence 54 223332222221111 122443 55565556677774
No 305
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.66 E-value=5.7e-06 Score=79.17 Aligned_cols=233 Identities=11% Similarity=0.153 Sum_probs=150.4
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
..+||.|.+|++.... -|.+|.-.....+.. ..| ..|..+.|+|. +++|
T Consensus 38 ~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~----------------------------~~~-~~V~~~~fSP~-~kYL 86 (561)
T COG5354 38 VSESPLGTYLFSEHAA-GVECWGGPSKAKLVR----------------------------FRH-PDVKYLDFSPN-EKYL 86 (561)
T ss_pred eeecCcchheehhhcc-ceEEccccchhheee----------------------------eec-CCceecccCcc-ccee
Confidence 3348999999998764 577998764332111 124 45889999999 6788
Q ss_pred EEEecCC---------------cEEEEECCCCeeeEEeccCCCC--eE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769 283 ASASADK---------------QVKIWDVAAGKCNLTLEHHTDK--VQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 283 ~sgs~Dg---------------~v~vwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 344 (502)
.+-+.-+ .+++||+.++..+..+..-..+ .+ -+.|+-+. .+++-. ....++|+++ +...
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~ 163 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNI 163 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCcc
Confidence 8865543 4999999999999999766555 45 67888877 554443 4567999997 3332
Q ss_pred cc-ceEee-cCCeEEEEeCCCCCC-EEEE-----EeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 345 SG-FKWAV-AADVESLAWDPHAEH-SFVV-----SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 345 ~~-~~~~~-~~~v~~v~~~p~~~~-~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
.. ..... ...+....|+|.+.+ .|+. ....+.+++|.+... ..+.+..-..-.-..+.|++.|
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lfk~~~~qLkW~~~g 234 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLFKVSGVQLKWQVLG 234 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeEeecccEEEEecCC
Confidence 21 11111 356888889986432 2222 356778999988754 3333332223334567888887
Q ss_pred CCEEEE-Ee----------CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCc-EEEEEeCCCcEEEEECCCC
Q 010769 417 PNLLAT-GS----------TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPF-VLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 417 ~~~l~t-~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~-llasg~~dg~i~vwd~~~~ 482 (502)
.+|+. .- ....++|++++... +... ....++|..++|.|.++. .+++|-....+.++|++.+
T Consensus 235 -~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~--i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 235 -KYLLVLVMTHTKSNKSYFGESNLYLLRITERS--IPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred -ceEEEEEEEeeecccceeccceEEEEeecccc--ccee-ccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 44332 11 12457888887544 1112 145689999999998753 3444456788999999876
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.2e-06 Score=88.22 Aligned_cols=186 Identities=18% Similarity=0.193 Sum_probs=133.7
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 344 (502)
..+.+.|++++. ..|+-|+.+|.|++++... .+ .+...|+.. ...| .++++|+.||+|.|..+-+.+.
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcc
Confidence 357788888874 4899999999999999653 33 333345543 4456 8999999999999999887765
Q ss_pred ccceEeecCCeEEEEeCCC----CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769 345 SGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~p~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
.. ......++.+++++|+ ....|++|+..| +.++.-+-... +....+....++|.++.|.. +++
T Consensus 106 ~~-~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~W~g---~lI 173 (846)
T KOG2066|consen 106 IT-QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIKWRG---NLI 173 (846)
T ss_pred ce-eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEEecC---cEE
Confidence 54 5677788999999997 344799999998 77776543311 22224666789999999993 788
Q ss_pred EEEeCCCcEEEEECCCCCeeEEEEecCCCC------CEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 421 ATGSTDKMVKLWDLSNNQPSCIASRNPKAG------AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 421 ~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
|=++.+| |+|||+.+.+.. ........ ....+.|.++.+ |+. |...+|+|..++
T Consensus 174 AWand~G-v~vyd~~~~~~l--~~i~~p~~~~R~e~fpphl~W~~~~~--LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRL--TNIPPPSQSVRPELFPPHLHWQDEDR--LVI-GWGDSVKICSIK 233 (846)
T ss_pred EEecCCC-cEEEecccccee--eccCCCCCCCCcccCCCceEecCCCe--EEE-ecCCeEEEEEEe
Confidence 8888777 999999987632 22221112 234688988876 444 445579999988
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=5.4e-05 Score=70.02 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=126.8
Q ss_pred eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc-CCCCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769 271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSPQILLSGSFDRSVVMKDARISTHSGFKW 349 (502)
Q Consensus 271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 349 (502)
++.|.+..+.++++-...+.|..|+..+++... +... . ...+.+. +++ .|+.+...+ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 568888546677777788999999998876543 2211 2 6777777 554 455555544 5556988775543333
Q ss_pred e-----ecCCeEEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC
Q 010769 350 A-----VAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV 416 (502)
Q Consensus 350 ~-----~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 416 (502)
. .....+.+++.|+|. ++++.... |.|..++.. . . +..+...-...+.|+|+|++
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~---------~-~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G---------K-VTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S---------E-EEEEEEEESSEEEEEEETTS
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C---------e-EEEEecCcccccceEECCcc
Confidence 2 223478899999876 55554432 557777776 3 2 22222234557899999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCCe-----eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 417 PNLLATGSTDKMVKLWDLSNNQP-----SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
..++++-+..+.|..|++..... .....+....+..-.+++..+|. +.++....+.|.+++.. ++.+..+
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEE
Confidence 44556777888899999864321 12223333334588999999998 67777778899999987 6665543
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.60 E-value=0.0001 Score=72.69 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=83.5
Q ss_pred ceeeEEecCCCCcEEEEE----ecCCc----EEEEECCCCee----eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 010769 268 SVLGLAWNKEFRNILASA----SADKQ----VKIWDVAAGKC----NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVV 335 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sg----s~Dg~----v~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 335 (502)
...++.|+...++.+.+. +.+|. -++|++..++. +.++ .....|.|++++|+. ..|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-~kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-DKLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-ceEEEEecCCeEE
Confidence 346777876556666654 33443 34677665532 2222 367899999999999 8899999999999
Q ss_pred EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769 336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 336 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~ 385 (502)
+||...+... .....-.++.++|+|+|. +|++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence 9999876433 334455678999999876 8999999999999998755
No 309
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.59 E-value=1.5e-08 Score=98.97 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=139.8
Q ss_pred ccceeeEEecCCC-CcEEEEEecCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEE----CCCcEEEEe
Q 010769 266 TDSVLGLAWNKEF-RNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGS----FDRSVVMKD 338 (502)
Q Consensus 266 ~~~V~~l~~~~~~-~~~l~sgs~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~dg~i~vwd 338 (502)
...+.|++++-+. +.+++.|..+|.|.+-.++...- .....+|...+++++|++-..+.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4557788776543 36899999999999988765432 2334568889999999998767777763 356799999
Q ss_pred CCCCCC----ccceE-eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEc
Q 010769 339 ARISTH----SGFKW-AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYN 413 (502)
Q Consensus 339 ~~~~~~----~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 413 (502)
+.+.-. ...+. .......+++|..+ ..++++|.....+.++|+|.. ........+..+..+...
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs----------~~~~~svnTk~vqG~tVd 204 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQS----------LDSVSSVNTKYVQGITVD 204 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhh----------hhhhhhhhhhhcccceec
Confidence 986521 11111 23445678999865 448899999999999999954 222222334567778888
Q ss_pred CCCCCEEEEEeCCCcEEEEE-CCCCCeeEEEEe----cCCCCCEEEEEEcCCCCcEEEEEeCC-CcEEEEECCC
Q 010769 414 PLVPNLLATGSTDKMVKLWD-LSNNQPSCIASR----NPKAGAVFSVAFSEDSPFVLAIGGSK-GKLEIWDTLS 481 (502)
Q Consensus 414 p~~~~~l~t~s~dg~i~vwd-~~~~~~~~~~~~----~~~~~~v~~~~~spd~~~llasg~~d-g~i~vwd~~~ 481 (502)
|..++++++-. ||.|-+|| .++-+. .+... ......+..++|+|..+.++++...| ++|+++++..
T Consensus 205 p~~~nY~cs~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 205 PFSPNYFCSNS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCCceeccc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 86668887766 99999999 333221 11111 11223599999999877778777765 6899999853
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=2.7e-08 Score=100.33 Aligned_cols=203 Identities=18% Similarity=0.180 Sum_probs=141.9
Q ss_pred ccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC-cEE
Q 010769 257 SIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR-SVV 335 (502)
Q Consensus 257 ~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~ 335 (502)
+....+..|+...+|++|+-. .+.|+.|+..|.|+++++.+|........|.++|+.+.-+.+|...|.+++... -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 334456678899999999988 679999999999999999999999999999999999999999955555555555 567
Q ss_pred EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE-Ee---cCCCCeeEEE
Q 010769 336 MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LH---AHDKAVCTIS 411 (502)
Q Consensus 336 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~---~h~~~v~~l~ 411 (502)
+|++...-..... -..-.++.|+.... .-+.|+......+||+.+.. ++.+ +. +....-++..
T Consensus 1171 LW~~~s~~~~~Hs---f~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~---------~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHS---FDEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCS---------PLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred HhccccccCcccc---ccccceeehhhhHH-HHHhcccccceEEEecccCc---------HHHHhcCcchhhhhhccccc
Confidence 8998753222211 23356788887533 45667767789999999972 3322 21 2223347788
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 412 YNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 412 ~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
|+|.. .+++ .||. +||++..+ .+..+..... -..-.|+|.|..+++ +-.|||+++-+.++..
T Consensus 1238 FsP~D-~LIl---ndGv--LWDvR~~~--aIh~FD~ft~-~~~G~FHP~g~eVII------NSEIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1238 FSPCD-TLIL---NDGV--LWDVRIPE--AIHRFDQFTD-YGGGGFHPSGNEVII------NSEIWDMRTFKLLHSV 1299 (1516)
T ss_pred cCCCc-ceEe---eCce--eeeeccHH--HHhhhhhhee-cccccccCCCceEEe------echhhhhHHHHHHhcC
Confidence 99987 6665 3553 89998875 3433332221 123359999986444 2358999998876543
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=2.7e-07 Score=58.08 Aligned_cols=39 Identities=33% Similarity=0.646 Sum_probs=36.7
Q ss_pred CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 338 (502)
++++.++.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 46789999999999999999998 9999999999999997
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.53 E-value=2.5e-05 Score=82.50 Aligned_cols=286 Identities=12% Similarity=0.204 Sum_probs=156.8
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
.++.|.++.|.-+.+-|+.+...|+ |...+.... ...+.+. +..-..|++| ||++..++..+.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~-----iilvd~et~-~~eivg~----vd~GI~aasw-------S~Dee~l~liT~ 129 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGD-----IILVDPETL-ELEIVGN----VDNGISAASW-------SPDEELLALITG 129 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCc-----EEEEccccc-ceeeeee----ccCceEEEee-------cCCCcEEEEEeC
Confidence 4578999999999999999998883 333333322 0011111 2233367788 899999999998
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
.+++.+-.-+ .+..... .. ..-....+....+-|-.. .+.+ .|+. |.....+..
T Consensus 130 ~~tll~mT~~-f~~i~E~---------------------~L-~~d~~~~sk~v~VGwGrk-eTqf-rgs~-gr~~~~~~~ 183 (1265)
T KOG1920|consen 130 RQTLLFMTKD-FEPIAEK---------------------PL-DADDERKSKFVNVGWGRK-ETQF-RGSE-GRQAARQKI 183 (1265)
T ss_pred CcEEEEEecc-ccchhcc---------------------cc-ccccccccccceeccccc-ceee-ecch-hhhcccccc
Confidence 8888665432 1111100 00 000001122233344332 1111 1211 111111111
Q ss_pred CC-eeeEEeccCCCCeEEEEEcCCCCcEEEEEE----CC-CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEE
Q 010769 298 AG-KCNLTLEHHTDKVQAVAWNHHSPQILLSGS----FD-RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVS 371 (502)
Q Consensus 298 ~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~d-g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 371 (502)
.. +......-+ +.=++|.|.-+| .++++.. .+ +.|++||.. +..........+--.+++|-|.|. .+++-
T Consensus 184 ~~ek~~~~~~~~-~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs-~iA~i 259 (1265)
T KOG1920|consen 184 EKEKALEQIEQD-DHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGS-LIAAI 259 (1265)
T ss_pred cccccccchhhc-cCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCC-eEeee
Confidence 10 001111112 233468999998 7777632 23 799999987 333332333444557899999766 44443
Q ss_pred ---eCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE---EeCCCcEEEEECCCCCeeEEEEe
Q 010769 372 ---LEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT---GSTDKMVKLWDLSNNQPSCIASR 445 (502)
Q Consensus 372 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t---~s~dg~i~vwd~~~~~~~~~~~~ 445 (502)
+.++.|.+|.-..... ......+......|..++|+.++ .+|++ ......|++|-+.+....+...+
T Consensus 260 q~~~sd~~IvffErNGL~h------g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 260 QCKTSDSDIVFFERNGLRH------GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred eecCCCCcEEEEecCCccc------cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 4566788887654321 12222333344559999999987 77777 44455599999988765444444
Q ss_pred cCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 446 NPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 446 ~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
....... +.|+|-..+.|.+-...|...++++
T Consensus 333 ~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 333 QFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 3322222 7788876655665556666655554
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=6.2e-08 Score=97.82 Aligned_cols=199 Identities=17% Similarity=0.229 Sum_probs=133.5
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
+-+.++|++|+..|.|++|++.++.... ....|..+|+-+.-+.+|..+|.++
T Consensus 1110 s~~~~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1110 SGGTNHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred ecCCceEEeeeccceEEEEEccCccccc---------------------------cccccccccccccccCCcceeeeec
Confidence 6789999999999999999998755433 3457999999999999977666666
Q ss_pred ecCC-cEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE----eecCCeEEEE
Q 010769 286 SADK-QVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW----AVAADVESLA 359 (502)
Q Consensus 286 s~Dg-~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~v~ 359 (502)
+... -..+|++.. +...++|. .-.++.|+... ..-+.|+.-..+.+||+.+........ .....-+++.
T Consensus 1163 s~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred cccCchHHHhccccccCcccccc----ccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 6555 578999864 45555554 34577887764 455566666789999999887654322 2233347889
Q ss_pred eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
|+|... +++ .|| .+||+|.. ..+..+...+..+. -.|+|+| .-++.-+ -|||+++.+
T Consensus 1238 FsP~D~-LIl---ndG--vLWDvR~~---------~aIh~FD~ft~~~~-G~FHP~g-~eVIINS-----EIwD~RTF~- 1294 (1516)
T KOG1832|consen 1238 FSPCDT-LIL---NDG--VLWDVRIP---------EAIHRFDQFTDYGG-GGFHPSG-NEVIINS-----EIWDMRTFK- 1294 (1516)
T ss_pred cCCCcc-eEe---eCc--eeeeeccH---------HHHhhhhhheeccc-ccccCCC-ceEEeec-----hhhhhHHHH-
Confidence 999765 443 355 47999976 44444443332222 3489998 5566544 389999876
Q ss_pred eEEEEecCCCCCEEEEEEcCCCC
Q 010769 440 SCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
++.....- .-..+.|+..|.
T Consensus 1295 -lLh~VP~L--dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1295 -LLHSVPSL--DQCAVTFNSTGD 1314 (1516)
T ss_pred -HHhcCccc--cceEEEeccCcc
Confidence 23322211 124566777766
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=7.5e-07 Score=82.67 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=115.2
Q ss_pred EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEE
Q 010769 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVV 370 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~ 370 (502)
|++.+..+-+...-+.+|...|..++|+|...-++..++.+..|+|.|+++....... .....+++++|.-+..+++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-eccCCceeeeeccCCcceeEE
Confidence 5666555555555667788999999999998558999999999999999987766533 344889999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEE------EcCCCCCEEEEEeCCCcEEEEECCCCC--ee
Q 010769 371 SLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTIS------YNPLVPNLLATGSTDKMVKLWDLSNNQ--PS 440 (502)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~------~sp~~~~~l~t~s~dg~i~vwd~~~~~--~~ 440 (502)
|..+|.|.+||+|... .++..+.+ ...+|..++ ..+.+ .+|+..+.+ +..|.+.... +.
T Consensus 254 Gl~nG~VlvyD~R~~~--------~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE--------GPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred eccCceEEEEEccCCC--------chHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhccccCCC
Confidence 9999999999999873 23332222 122333332 33334 566655554 5677665432 22
Q ss_pred EEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769 441 CIASRNPKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 441 ~~~~~~~~~~~v~~~~~spd~~~llasg~~ 470 (502)
++.... ..+.+.+++.++-.+.+|++.-.
T Consensus 323 ~vlele-~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 323 CVLELE-PPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred cccccC-CCcceeeeeecCccceEEEEecC
Confidence 333333 34667788888866667776544
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.3e-05 Score=81.61 Aligned_cols=199 Identities=14% Similarity=0.143 Sum_probs=130.9
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCC-eEEEEEcCCCCcEEEEEECCCc-----EEEEeCCC
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHHSPQILLSGSFDRS-----VVMKDARI 341 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~-----i~vwd~~~ 341 (502)
.|.| |++. +..++.|+.+|.|.+.+ +.-+.++.|+.+... |+.+ |.-++.++|++.+.|+. |++|++..
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEec-ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccc
Confidence 5555 4555 45899999999988877 334555778877777 4444 44444478888877654 89999875
Q ss_pred CCC---ccc-----eEe-----ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee
Q 010769 342 STH---SGF-----KWA-----VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408 (502)
Q Consensus 342 ~~~---~~~-----~~~-----~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~ 408 (502)
.+. +.. ... ...++.+++.+.+ -..+++|-.+|.|.++.-.-... . .....-......+|+
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RD---r--gsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRD---R--GSRQDYSHRGKEPIT 175 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhc---c--ccceeeeccCCCCce
Confidence 321 111 111 2456788888876 45899999999999885322110 0 122222334467999
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
++++..++...+.+++ -..|.+|.+.... ........|..+++|.+|++.... +++++.. .|.+|+...
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~q-fIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQ-FICAGSE-FLYFYDSDG 244 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCC-cceeeeccCCccceeeecCCCCcc-EEEecCc-eEEEEcCCC
Confidence 9999988744333333 3469999998554 345567788889999999987764 4444433 699999863
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.49 E-value=5.3e-05 Score=69.63 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=114.1
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec----C--
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----A-- 353 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~-- 353 (502)
..+++++.++.|..||..+|+.+.++.. ...+....... + ..+++++.++.|+.+|..+++..-...... .
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-c-cccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 4677778999999999999999887764 22221111222 2 456777788899999988887644311111 0
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe-----------eEEEEcCCCCCEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-----------CTISYNPLVPNLLAT 422 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-----------~~l~~sp~~~~~l~t 422 (502)
......+. + ..++++..++.|..+|++++ +.++......... ..+.+. + ..++.
T Consensus 114 ~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~ 178 (238)
T PF13360_consen 114 SSSSPAVD--G-DRLYVGTSSGKLVALDPKTG---------KLLWKYPVGEPRGSSPISSFSDINGSPVIS--D-GRVYV 178 (238)
T ss_dssp --SEEEEE--T-TEEEEEETCSEEEEEETTTT---------EEEEEEESSTT-SS--EEEETTEEEEEECC--T-TEEEE
T ss_pred cccCceEe--c-CEEEEEeccCcEEEEecCCC---------cEEEEeecCCCCCCcceeeecccccceEEE--C-CEEEE
Confidence 11122222 3 36888888999999999998 6677666544221 222222 2 36666
Q ss_pred EeCCCc-EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769 423 GSTDKM-VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 423 ~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~ 486 (502)
++.++. +.+ |+.+++. +.... ...+..+ ....+.. |++++.++.|..||+++++.+-
T Consensus 179 ~~~~g~~~~~-d~~tg~~--~w~~~--~~~~~~~-~~~~~~~-l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 179 SSGDGRVVAV-DLATGEK--LWSKP--ISGIYSL-PSVDGGT-LYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECCTSSEEEE-ETTTTEE--EEEEC--SS-ECEC-EECCCTE-EEEEETTTEEEEEETTTTEEEE
T ss_pred EcCCCeEEEE-ECCCCCE--EEEec--CCCccCC-ceeeCCE-EEEEeCCCEEEEEECCCCCEEe
Confidence 777775 555 9999983 33333 2223332 3455553 5556689999999999998753
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.5e-05 Score=81.14 Aligned_cols=193 Identities=15% Similarity=0.184 Sum_probs=128.2
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccc-eeeEEecCCCCcEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDS-VLGLAWNKEFRNILAS 284 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s 284 (502)
++++..+|.|+.+|.|.+.+-. ......++.+... |..|. .-++.++|++
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------~~~~~~fqa~~~siv~~L~-~~~~~~~L~s 82 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------FQLIRGFQAYEQSIVQFLY-ILNKQNFLFS 82 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------ceeeehheecchhhhhHhh-cccCceEEEE
Confidence 6789999999999999887643 1222234455555 44444 4443678888
Q ss_pred EecCCc-----EEEEECCCC------eee--EEecc-----CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC--CCCC
Q 010769 285 ASADKQ-----VKIWDVAAG------KCN--LTLEH-----HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR--ISTH 344 (502)
Q Consensus 285 gs~Dg~-----v~vwd~~~~------~~~--~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~ 344 (502)
.+.|+. |+||+++.- +++ +.+.. ...++.+++.+.+- ..+++|-.+|.|..+.-. ..+.
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccc
Confidence 877654 999998632 344 12222 34678899999886 889999999999988532 1222
Q ss_pred ccce--EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769 345 SGFK--WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 345 ~~~~--~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t 422 (502)
.... .....+|+.+.+..++...+++++ ...|.+|.+... ......+..|..++.|.++++..+.++++
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr--------~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR--------TPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC--------CcceeeeccCCccceeeecCCCCccEEEe
Confidence 2222 234678999999887765334433 456889998844 22345577888899999999865334444
Q ss_pred EeCCCcEEEEECCCCCe
Q 010769 423 GSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~ 439 (502)
++ ..+.+|+.....+
T Consensus 233 ~~--e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 233 GS--EFLYFYDSDGRGP 247 (933)
T ss_pred cC--ceEEEEcCCCcce
Confidence 33 4599999886653
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2.2e-05 Score=79.33 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=119.4
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+++|+-|+-.|.|++++.+..- .....|+.. .-. +.+++|||.
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~-----------------------------~~~~~~s~~------~~~-Gey~asCS~ 91 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP-----------------------------KTNFDHSSS------ILE-GEYVASCSD 91 (846)
T ss_pred hcceeeeccccceEEEEecCCcc-----------------------------ccccccccc------ccC-CceEEEecC
Confidence 48899999999999999876310 011123332 334 569999999
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCC----CCcEEEEEECCCcEEEEeCCCCC--CccceEeecCCeEEEEeC
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDARIST--HSGFKWAVAADVESLAWD 361 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~v~~~ 361 (502)
||+|.|-.+-+.+...++. ...++.+++++|+ ....+++|+.-| +.++.-+-.. .........+.|.++.|.
T Consensus 92 DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~ 169 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR 169 (846)
T ss_pred CCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence 9999999999888777776 4578999999998 236799999988 7776544221 122244567889999998
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
. ++++-+...| |++||+.+.+...... .+. ........-..+.|.+.. .|+.| ...+|+|..++.
T Consensus 170 g---~lIAWand~G-v~vyd~~~~~~l~~i~--~p~-~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 170 G---NLIAWANDDG-VKVYDTPTRQRLTNIP--PPS-QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKK 234 (846)
T ss_pred C---cEEEEecCCC-cEEEeccccceeeccC--CCC-CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEec
Confidence 4 3666666555 8999998763221110 011 011112234567788743 45544 445699988873
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=5.8e-06 Score=83.63 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=81.4
Q ss_pred CCCCCEEEEecCC----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcE
Q 010769 206 REKGNFMAVGSME----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNI 281 (502)
Q Consensus 206 s~~~~~la~g~~d----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~ 281 (502)
+|...++|+++.. |+|.||- ++++.... . ...-.+++|+|+|. ..+
T Consensus 24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------------------V---t~P~hatSLCWHpe-~~v 73 (1416)
T KOG3617|consen 24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------------------V---TYPVHATSLCWHPE-EFV 73 (1416)
T ss_pred CCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------------------c---ccceehhhhccChH-HHH
Confidence 7888899998764 7888873 33331110 0 11223667999999 778
Q ss_pred EEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769 282 LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 282 l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
|++|-.-|.+.+|...+.+.......|..+|+.+.|+++| ..|+++..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 9999999999999988776666667799999999999999 899999999999999765
No 320
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=7.3e-07 Score=56.04 Aligned_cols=38 Identities=32% Similarity=0.679 Sum_probs=35.5
Q ss_pred CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
+++..+.+|...|++++|+|++ .+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4678899999999999999997 9999999999999997
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.42 E-value=7.9e-05 Score=68.82 Aligned_cols=206 Identities=14% Similarity=0.083 Sum_probs=126.8
Q ss_pred eeeEEecCCCCcEEEEEecCCc-EEEEECCCCeeeEEeccCCCCeE--EEEEcCCCCcEEEEEE-----CCCcEEEEeCC
Q 010769 269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDKVQ--AVAWNHHSPQILLSGS-----FDRSVVMKDAR 340 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~-v~vwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~l~s~~-----~dg~i~vwd~~ 340 (502)
...++.+|..+..++.+-.-|+ ..+||..+++....+....+.-. .-.|+++| ++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECc
Confidence 4467888865777888877765 77899999988877754332221 35799999 6777653 35899999998
Q ss_pred -CCCCccceEeecCCeEEEEeCCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCCCCCCCCccEE--E
Q 010769 341 -ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL-----------------EDGTIKGFDIRTAKSDPDSTSQQSSFT--L 400 (502)
Q Consensus 341 -~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~ 400 (502)
+-..+.....+.-....+.+.|+++.+++.-+ .+.++.+.|.+++ ..+.. +
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---------~ll~q~~L 156 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---------ALLEQVEL 156 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---------ceeeeeec
Confidence 33333323334445667788998864333321 1223344444444 22322 3
Q ss_pred --ecCCCCeeEEEEcCCCCCEEEEEeCCCc-------EEEEECCCCCeeEEEEe-----cCCCCCEEEEEEcCCCCcEEE
Q 010769 401 --HAHDKAVCTISYNPLVPNLLATGSTDKM-------VKLWDLSNNQPSCIASR-----NPKAGAVFSVAFSEDSPFVLA 466 (502)
Q Consensus 401 --~~h~~~v~~l~~sp~~~~~l~t~s~dg~-------i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~spd~~~lla 466 (502)
..|.-.|..+++.++| ..++..-..|- |-++..... ...... ..-.+.+-+|++++++.++.+
T Consensus 157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 3367789999999886 44443333221 333332221 111111 122466899999999997667
Q ss_pred EEeCCCcEEEEECCCCccccc
Q 010769 467 IGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 467 sg~~dg~i~vwd~~~~~~~~~ 487 (502)
|+=..+.+.+||..++..+..
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ECCCCCEEEEEECCCCCEeec
Confidence 766778999999999987654
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.35 E-value=2.9e-05 Score=76.37 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=89.3
Q ss_pred ecCCeEEEEeCCCCCCEEEEE----eCCCe----EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEE
Q 010769 351 VAADVESLAWDPHAEHSFVVS----LEDGT----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 351 ~~~~v~~v~~~p~~~~~l~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t 422 (502)
......++.|+...++.+.+. +.+|. -.+|++...+. .....+.....+.|.+++++|+. ..|+.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl------qrvsvtsipL~s~v~~ca~sp~E-~kLvl 276 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL------QRVSVTSIPLPSQVICCARSPSE-DKLVL 276 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce------eEEEEEEEecCCcceEEecCccc-ceEEE
Confidence 344556677776555555543 22333 34566543321 11122223567889999999987 89999
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCCCC
Q 010769 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKYSK 494 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~~~ 494 (502)
|+.||+|.+||...+..... ...-..+.++|+|+|. ++++|+..|.+.+||+.-+..-.+.++....
T Consensus 277 GC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~ 343 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDAT 343 (545)
T ss_pred EecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCC
Confidence 99999999999987642211 2234478899999999 6899999999999999877766666555433
No 323
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.33 E-value=0.00021 Score=65.10 Aligned_cols=202 Identities=15% Similarity=0.189 Sum_probs=117.6
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 342 (502)
+-...+.+|+|+|+.+.++++....+.|..+++ +|+.++++... .+-.-.|++..++ .++++.-.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecc
Confidence 445569999999986778888888889988886 47888777433 3567888998776 66666656899999988443
Q ss_pred CCc--c---ceE------eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccE--E------EecC
Q 010769 343 THS--G---FKW------AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSF--T------LHAH 403 (502)
Q Consensus 343 ~~~--~---~~~------~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~------~~~h 403 (502)
... . ... .....+..++|+|.+.. |+++-...-..+|.++.... ...+. . ....
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPG------GFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-------SS--EEEE-HHHH-HT--
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccC------ccceeeccccccccccce
Confidence 211 1 011 13356899999998764 55556666666777664210 01111 1 1123
Q ss_pred CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC-------CCCEEEEEEcCCCCcEEEEEeCCCcEEE
Q 010769 404 DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 404 ~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~~~~spd~~~llasg~~dg~i~v 476 (502)
...+++++++|..+.+++.......|..+| ..+++.....+... ....-.|+|.++|. |++ .+.-+.+++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI-vsEpNlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI-VSEPNLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEE-EETTTEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEE-EcCCceEEE
Confidence 456899999998767888888889999999 55665555555431 12467899999997 444 456666655
Q ss_pred E
Q 010769 477 W 477 (502)
Q Consensus 477 w 477 (502)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.32 E-value=0.00067 Score=67.50 Aligned_cols=223 Identities=9% Similarity=0.060 Sum_probs=125.0
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
+..+++++.+|.|.-+|..+++.+..... ........+...++. . . + .++.++.+
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------~~~~~~~~~~~sP~v----~-~-~-~v~~~~~~ 214 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNL------------------DVPSLTLRGESAPAT----A-F-G-GAIVGGDN 214 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecC------------------CCCcccccCCCCCEE----E-C-C-EEEEEcCC
Confidence 45677788889999999887655432211 000000011112221 1 1 2 46667788
Q ss_pred CcEEEEECCCCeeeEEeccCCC-------CeEEEEEcC--CCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEE
Q 010769 289 KQVKIWDVAAGKCNLTLEHHTD-------KVQAVAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLA 359 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~ 359 (502)
|.+..+|..+|+.+........ ....+..+| .+ ..++.++.+|.+..+|..+++..- ...... ...+.
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W-~~~~~~-~~~~~ 291 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVW-KREYGS-VNDFA 291 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEE-eecCCC-ccCcE
Confidence 9999999999887665431110 001111112 13 456777789999999998876432 111111 11122
Q ss_pred eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
.. +. .+++++.+|.|..+|..++ ..++...... ....+..+. + ..|+.++.+|.|.++|..+++
T Consensus 292 ~~--~~-~vy~~~~~g~l~ald~~tG---------~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 292 VD--GG-RIYLVDQNDRVYALDTRGG---------VELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred EE--CC-EEEEEcCCCeEEEEECCCC---------cEEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence 21 23 6778888999999999887 3344332111 112222222 2 678889999999999999998
Q ss_pred eeEEEEecCCCCCEEE-EEEcCCCCcEEEEEeCCCcEEEEEC
Q 010769 439 PSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKGKLEIWDT 479 (502)
Q Consensus 439 ~~~~~~~~~~~~~v~~-~~~spd~~~llasg~~dg~i~vwd~ 479 (502)
. +.........+.+ ..+ .++ .|..++.+|.|+.++.
T Consensus 357 ~--~~~~~~~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 357 F--VAQQKVDSSGFLSEPVV-ADD--KLLIQARDGTVYAITR 393 (394)
T ss_pred E--EEEEEcCCCcceeCCEE-ECC--EEEEEeCCceEEEEeC
Confidence 4 3333222222322 222 234 3667889999888764
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.31 E-value=0.00067 Score=62.82 Aligned_cols=226 Identities=14% Similarity=0.072 Sum_probs=135.4
Q ss_pred CC-CCCEEEEecCCC-cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEE
Q 010769 206 RE-KGNFMAVGSMEP-AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILA 283 (502)
Q Consensus 206 s~-~~~~la~g~~dg-~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 283 (502)
+| .+..+|.+-.-| ...+||..++....... ...-..+.+| -.|+++|+ +|+
T Consensus 13 ~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------------------a~~gRHFyGH------g~fs~dG~-~Ly 66 (305)
T PF07433_consen 13 HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------------------APPGRHFYGH------GVFSPDGR-LLY 66 (305)
T ss_pred CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------------------CCCCCEEecC------EEEcCCCC-EEE
Confidence 55 566777777665 46788887655433211 1222345566 46999955 666
Q ss_pred EE-----ecCCcEEEEECC-CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC------------------CCcEEEEeC
Q 010769 284 SA-----SADKQVKIWDVA-AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF------------------DRSVVMKDA 339 (502)
Q Consensus 284 sg-----s~Dg~v~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~------------------dg~i~vwd~ 339 (502)
+. +..|.|-|||.. +-+.+..+..|.-....+.+.|++ ..|+++.. +.++.+.|.
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 65 335889999998 567788888888778889999999 55555521 234555566
Q ss_pred CCCCCccce----EeecCCeEEEEeCCCCCCEEEEEeC-CC-------eEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769 340 RISTHSGFK----WAVAADVESLAWDPHAEHSFVVSLE-DG-------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 340 ~~~~~~~~~----~~~~~~v~~v~~~p~~~~~l~~~~~-dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
+++...... ..+...+..+++.+++. ++.+.. .| .|.++......... ..+......-.+.+
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~----~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLL----PAPEEQWRRLNGYI 219 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceec----cCChHHHHhhCCce
Confidence 666544321 12455788889988764 444321 11 23333332210000 00001112345789
Q ss_pred eEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeC
Q 010769 408 CTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGS 470 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~ 470 (502)
-+|++++++..+.+|+=.-+.+.+||..+++...... ...+..++..+++ | +++++.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f-~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-F-LVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-e-EEeCCC
Confidence 9999999884455666678889999999998432222 2346677777776 3 555443
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=0.00061 Score=60.27 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=68.2
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeE-EecCCCCcEEEEEec
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGL-AWNKEFRNILASASA 287 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~~l~sgs~ 287 (502)
|++++.|+..|.+++.++.++.....+.+++. |.+- ...++ +.++..|+.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----------------------------vk~~a~~d~~-~glIycgsh 113 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----------------------------VKVRAQCDFD-GGLIYCGSH 113 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhh----------------------------hccceEEcCC-CceEEEecC
Confidence 88999999999999999988766555444331 1111 22344 459999999
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
|++....|..+..++...+-..+...+-+..|-. ..|..+...|.+.--...
T Consensus 114 d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 114 DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKN 165 (354)
T ss_pred CCcEEEecccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccC
Confidence 9999999999999988876443333344455533 345555556665554443
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.001 Score=66.11 Aligned_cols=229 Identities=10% Similarity=0.070 Sum_probs=132.6
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+..+++++.+|.+..+|..+++.+.....-+ .....++ .. + ..++.++.
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-----------------------~~~ssP~----v~-~--~~v~v~~~ 168 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-----------------------EALSRPV----VS-D--GLVLVHTS 168 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-----------------------ceecCCE----EE-C--CEEEEECC
Confidence 35677788889999999988766544211100 0011111 11 2 35677888
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEE-EEEcC--CCCcEEEEEECCCcEEEEeCCCCCCccceEeecCC--------eE
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQA-VAWNH--HSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD--------VE 356 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~-l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~ 356 (502)
++.|..+|..+|+.+..+......+.. ..-+| .+ ..++.++.+|.+..+|..+++..-. .....+ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQPTGATEIDRLV 246 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhhe-eccccCCCccchhccc
Confidence 899999999999988777532111000 00011 12 3466777889999999887764321 111000 00
Q ss_pred EEEeCC--CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 357 SLAWDP--HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 357 ~v~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
.+.-+| .+. .+++++.+|.+..+|..++ +.++..... ....+... + ..|+.++.+|.+..+|.
T Consensus 247 ~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG---------~~~W~~~~~--~~~~~~~~--~-~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 247 DVDTTPVVVGG-VVYALAYNGNLVALDLRSG---------QIVWKREYG--SVNDFAVD--G-GRIYLVDQNDRVYALDT 311 (394)
T ss_pred ccCCCcEEECC-EEEEEEcCCeEEEEECCCC---------CEEEeecCC--CccCcEEE--C-CEEEEEcCCCeEEEEEC
Confidence 111122 123 5777778999999999987 444443321 11122222 3 57777888999999999
Q ss_pred CCCCeeEEEEecCCC-CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 435 SNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 435 ~~~~~~~~~~~~~~~-~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
.+++. +....... ....+.... ++ .|..++.+|.|.+.|..+++.+.+.
T Consensus 312 ~tG~~--~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 312 RGGVE--LWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCCcE--EEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEE
Confidence 98873 33222111 112222222 33 3667889999999999999877554
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=5.9e-05 Score=76.66 Aligned_cols=112 Identities=12% Similarity=0.276 Sum_probs=76.3
Q ss_pred ccccccCCCceEEEEEecCC-cceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcE
Q 010769 143 EDMTINPNDAVIVCARNEDD-VSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAI 221 (502)
Q Consensus 143 ~~~~~~p~~~~l~~~~~~~~-~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I 221 (502)
+-..|+|...++++++..-. .+++.||.-. ++. . .|-.. |.-..++.| +|..-.||.|-.-|.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadt-GEP---q--r~Vt~--P~hatSLCW-------Hpe~~vLa~gwe~g~~ 83 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADT-GEP---Q--RDVTY--PVHATSLCW-------HPEEFVLAQGWEMGVS 83 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecC-CCC---C--ccccc--ceehhhhcc-------ChHHHHHhhcccccee
Confidence 34579999999999976542 2344444322 221 1 11111 111244567 6778889999889999
Q ss_pred EEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECC
Q 010769 222 EIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVA 297 (502)
Q Consensus 222 ~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~ 297 (502)
.+|..... ........|+.+|..+.|+++ ++.|.++..=|.|.+|.+.
T Consensus 84 ~v~~~~~~---------------------------e~htv~~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 84 DVQKTNTT---------------------------ETHTVVETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEEecCCc---------------------------eeeeeccCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 99987642 122233469999999999999 5699999999999999875
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00023 Score=71.31 Aligned_cols=161 Identities=12% Similarity=0.185 Sum_probs=100.2
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP 219 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg 219 (502)
.-|.=-++..++.+|+.|+..| -||.|+...+....+... . .....|+..+ |++..++|.|+..|
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G-----~lyl~~R~~~~~~~~~~~---~-~~~~~~~~~v------s~~e~lvAagt~~g 98 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAG-----SVYLYNRHTGEMRKLKNE---G-ATGITCVRSV------SSVEYLVAAGTASG 98 (726)
T ss_pred ceEEEEEeecCCceEEEecccc-----eEEEEecCchhhhccccc---C-ccceEEEEEe------cchhHhhhhhcCCc
Confidence 3444456777899999999888 888888766522222110 0 1122333333 67889999999999
Q ss_pred cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769 220 AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 220 ~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~ 299 (502)
.|.|+-++. ....+...+ ...-..|...|+|++|+++ ...|++|...|+|.+-.+.+.
T Consensus 99 ~V~v~ql~~-~~p~~~~~~--------------------t~~d~~~~~rVTal~Ws~~-~~k~ysGD~~Gkv~~~~L~s~ 156 (726)
T KOG3621|consen 99 RVSVFQLNK-ELPRDLDYV--------------------TPCDKSHKCRVTALEWSKN-GMKLYSGDSQGKVVLTELDSR 156 (726)
T ss_pred eEEeehhhc-cCCCcceee--------------------ccccccCCceEEEEEeccc-ccEEeecCCCceEEEEEechh
Confidence 999998875 222221111 1112248899999999999 669999999999999888772
Q ss_pred ----eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769 300 ----KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 300 ----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 341 (502)
-..+.+-...+.|..+.+... .+|++.. - ...++++..
T Consensus 157 ~~~~~~~q~il~~ds~IVQlD~~q~--~LLVStl-~-r~~Lc~tE~ 198 (726)
T KOG3621|consen 157 QAFLSKSQEILSEDSEIVQLDYLQS--YLLVSTL-T-RCILCQTEA 198 (726)
T ss_pred hhhccccceeeccCcceEEeecccc--eehHhhh-h-hhheeecch
Confidence 112223334567777776542 3444333 2 234455543
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00011 Score=72.79 Aligned_cols=204 Identities=14% Similarity=0.090 Sum_probs=122.5
Q ss_pred ccceeeEEecCCCCcEEEEEecC---CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcE--EEEeCC
Q 010769 266 TDSVLGLAWNKEFRNILASASAD---KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSV--VMKDAR 340 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~D---g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i--~vwd~~ 340 (502)
...+..-+|+|++..+.+..-.. ..+.++++.+++....+. ..+.-..-+|+|+|..++++...||.. .++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 35566778999865544443222 359999999886544443 233344567999998888888888865 555666
Q ss_pred CCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769 341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
...... +....+.-..=.|+|+|..+++++...|.-.+|-.... ......+....+.-..-.|+|+| .+|
T Consensus 271 ~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~--------g~~~~riT~~~~~~~~p~~SpdG-~~i 340 (425)
T COG0823 271 GKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE--------GSQVTRLTFSGGGNSNPVWSPDG-DKI 340 (425)
T ss_pred CCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC--------CCceeEeeccCCCCcCccCCCCC-CEE
Confidence 655333 22233333466799999988888888887555544433 12233444333333477899999 555
Q ss_pred EEEeC-CCc--EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 421 ATGST-DKM--VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 421 ~t~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+..+. .|. |.+.++.++.. .....+......-.|.|++..++.+++.-+.=.++.+....
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g 403 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGK---IRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDG 403 (425)
T ss_pred EEEeccCCceeeEEeccCCCCc---EEEccccccCCCCCcCCCCceEEEeccCCCCceEEEeeccc
Confidence 54443 454 66667766552 11222223344567888888766655555444555554433
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.17 E-value=0.00027 Score=74.95 Aligned_cols=202 Identities=15% Similarity=0.251 Sum_probs=130.1
Q ss_pred ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeC----CC
Q 010769 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDA----RI 341 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~----~~ 341 (502)
.+.|.++.|..+ .+-++.+...|.|.+-|..+..... ...-...|.+++|+|++ ..++..+..+++.+-.- -.
T Consensus 68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecc-cceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchh
Confidence 378999999988 6678888899999999887764322 22346789999999999 78888887777766332 10
Q ss_pred -----------CCCccceEe-----------------------------ecCCeEEEEeCCCCCCEEEEE-----eCCCe
Q 010769 342 -----------STHSGFKWA-----------------------------VAADVESLAWDPHAEHSFVVS-----LEDGT 376 (502)
Q Consensus 342 -----------~~~~~~~~~-----------------------------~~~~v~~v~~~p~~~~~l~~~-----~~dg~ 376 (502)
.+.+..-|+ ....-++++|.-+|. +|+++ .....
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEeccCCcee
Confidence 010100010 112234689998876 66663 22378
Q ss_pred EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCe-eEEEEecCCCCCE
Q 010769 377 IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQP-SCIASRNPKAGAV 452 (502)
Q Consensus 377 i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~-~~~~~~~~~~~~v 452 (502)
|++||.. +.. -..-....+.-.+++|-|.| .++++.. .|+.|.+|.-+.-+. ............|
T Consensus 224 irV~drE-g~L---------ns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 224 IRVYDRE-GAL---------NSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EEEeccc-chh---------hcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence 9999987 311 11111122334678999987 7777753 356799997654331 1222334444559
Q ss_pred EEEEEcCCCCcEEEE---EeCCCcEEEEECCCCc
Q 010769 453 FSVAFSEDSPFVLAI---GGSKGKLEIWDTLSDA 483 (502)
Q Consensus 453 ~~~~~spd~~~llas---g~~dg~i~vwd~~~~~ 483 (502)
..++|+.++. +||+ ......|++|-+.+..
T Consensus 293 e~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 293 EELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred heeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 9999999998 6777 4555569999887644
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.15 E-value=0.00061 Score=68.96 Aligned_cols=257 Identities=13% Similarity=0.151 Sum_probs=136.7
Q ss_pred EEEecCCCcEEEeeCCCCCCCCceeeeCCcchh------hhhhccccCCc-cccccccCCcccceeeEEec---CCCCcE
Q 010769 212 MAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEE------KKKKKSKKGKK-SSIKYKKGSHTDSVLGLAWN---KEFRNI 281 (502)
Q Consensus 212 la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~~---~~~~~~ 281 (502)
|.+|+..|.++|+-+.++..+..+.++...+.. ..++....... .....--..|. .+++. -+|+ +
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp----~~s~t~g~ydGr-~ 143 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP----HMSFTDGTYDGR-Y 143 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC----cccccCCcccee-E
Confidence 678899999999999998887776666543221 01100000000 00000000111 11121 1333 4
Q ss_pred EEEEe-cCCcEEEEECCCCeeeEEecc-CCCCeEEEE-------------------EcCCCCcEEEEEECCCcEEEEeCC
Q 010769 282 LASAS-ADKQVKIWDVAAGKCNLTLEH-HTDKVQAVA-------------------WNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 282 l~sgs-~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~-------------------~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
|+.-. ....|-.-++...++-+.+.- ....+..++ +.|+|..+..+.-..+.+.+.|..
T Consensus 144 ~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~e 223 (635)
T PRK02888 144 LFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAE 223 (635)
T ss_pred EEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECc
Confidence 44433 355666666665544332210 111222222 234442222233344566777776
Q ss_pred CCCCccceEeecCCeEEEEeCCCCCCEEEEEe---------------------------------------CCCeEEEEE
Q 010769 341 ISTHSGFKWAVAADVESLAWDPHAEHSFVVSL---------------------------------------EDGTIKGFD 381 (502)
Q Consensus 341 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~---------------------------------------~dg~i~i~d 381 (502)
+.+.. ......+....+.++|++...++++. .++.|.++|
T Consensus 224 tmeV~-~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID 302 (635)
T PRK02888 224 TMEVA-WQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVD 302 (635)
T ss_pred cceEE-EEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEE
Confidence 54332 23344455566777777664444431 124466666
Q ss_pred CCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe----------eEEEEecCCCCC
Q 010769 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP----------SCIASRNPKAGA 451 (502)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~----------~~~~~~~~~~~~ 451 (502)
.++..... ...+..+. -......+.++|+|..+++++..+.+|.|+|+.+.+. ..+.......+
T Consensus 303 ~~t~~~~~----~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG- 376 (635)
T PRK02888 303 GRKAANAG----SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG- 376 (635)
T ss_pred CCccccCC----cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-
Confidence 66510000 12333333 4456788999999966666777799999999987542 12333333333
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 452 v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
-...+|.++|. .+.+-.-|..|..|++.+
T Consensus 377 PLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 34678999987 688888999999999976
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.14 E-value=0.00088 Score=65.50 Aligned_cols=272 Identities=15% Similarity=0.195 Sum_probs=143.8
Q ss_pred ccccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeecc---cc------------CCCcceeeeecCCC
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHI---II------------PAFPLCMAWLDCPL 203 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~---~~------------~~~~~~~~w~~~~~ 203 (502)
...+....|+|+|+.||..... .||..+...+....|. ++. +. -.....+-|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~------nly~~~~~~~~~~~lT--~dg~~~i~nG~~dwvyeEEv~~~~~~~~W----- 108 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDN------NLYLRDLATGQETQLT--TDGEPGIYNGVPDWVYEEEVFDRRSAVWW----- 108 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETT------EEEEESSTTSEEEESE--S--TTTEEESB--HHHHHHTSSSSBSEEE-----
T ss_pred ccccccceeecCCCeeEEEecC------ceEEEECCCCCeEEec--cccceeEEcCccceeccccccccccceEE-----
Confidence 4578899999999999999854 7888865443111111 111 00 111234444
Q ss_pred CCCCCCCEEEEecCC-CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 204 KDREKGNFMAVGSME-PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 204 ~~s~~~~~la~g~~d-g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
||+|++||....| ..|+.+.+....... +.--.+..+.+-.-|...
T Consensus 109 --Spd~~~la~~~~d~~~v~~~~~~~~~~~~------------------------------~~yp~~~~~~YPk~G~~n- 155 (353)
T PF00930_consen 109 --SPDSKYLAFLRFDEREVPEYPLPDYSPPD------------------------------SQYPEVESIRYPKAGDPN- 155 (353)
T ss_dssp ---TTSSEEEEEEEE-TTS-EEEEEEESSST------------------------------ESS-EEEEEE--BTTS---
T ss_pred --CCCCCEEEEEEECCcCCceEEeeccCCcc------------------------------ccCCcccccccCCCCCcC-
Confidence 8999999987655 455555542100000 000123444442221111
Q ss_pred EEEecCCcEEEEECCCCeeeE-E-e---ccCCCCeEEEEEcCCCCcEEEE-EECCC---cEEEEeCCCCCCccceEe-ec
Q 010769 283 ASASADKQVKIWDVAAGKCNL-T-L---EHHTDKVQAVAWNHHSPQILLS-GSFDR---SVVMKDARISTHSGFKWA-VA 352 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~~~~~~-~-~---~~h~~~v~~l~~~~~~~~~l~s-~~~dg---~i~vwd~~~~~~~~~~~~-~~ 352 (502)
. .-.+.|+++.+++... . . ..-..-+..+.|.+++..+++. ...+. .+.++|..++........ ..
T Consensus 156 p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 156 P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp -----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 1 1246778888776532 1 1 2234578899999998313333 23332 466677776554332222 22
Q ss_pred CCe---EEEEeC-CCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE-EEEcCCCCCEEEEEeCCC
Q 010769 353 ADV---ESLAWD-PHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT-ISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 353 ~~v---~~v~~~-p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~t~s~dg 427 (502)
+.| ....|. +++..++.....+|.-++|-+... ......+....-.|.. +.+++.+..+..++..++
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--------GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--------SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--------ccceeccccCceeecccceEcCCCCEEEEEecCCC
Confidence 222 244554 777777777778887666555443 2334455555566744 677888756666776533
Q ss_pred ----cEEEEECC-CCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769 428 ----MVKLWDLS-NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 428 ----~i~vwd~~-~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d 471 (502)
.|+.-++. .+.+. .+....+.-..+.|||+++|++.+++.-
T Consensus 304 p~~r~lY~v~~~~~~~~~---~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPK---CLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp TTSBEEEEEETTETTEEE---ESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred CCceEEEEEEeCCCCCeE---eccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 56666777 55533 3333333337999999999877776643
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.06 E-value=0.004 Score=58.46 Aligned_cols=247 Identities=15% Similarity=0.131 Sum_probs=135.2
Q ss_pred CCCCCEEEEec----------CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec
Q 010769 206 REKGNFMAVGS----------MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN 275 (502)
Q Consensus 206 s~~~~~la~g~----------~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 275 (502)
+|+++.+.+++ ..-.|.+||..+......+.+.++ ++.. .......++++
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k---------------~R~~-----~~~~~~~~~ls 103 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK---------------PRAQ-----VVPYKNMFALS 103 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS----------------B-------BS--GGGEEE-
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc---------------chhe-----ecccccceEEc
Confidence 78999888743 235799999987544433333221 0000 11123345777
Q ss_pred CCCCcEEEEEe--cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE-ee-
Q 010769 276 KEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW-AV- 351 (502)
Q Consensus 276 ~~~~~~l~sgs--~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~- 351 (502)
.+++ +++... --.+|.|.|+..++.+..+.. .+ +..+ -|.++.-|.+-+.||.+.-..+.......... ..
T Consensus 104 ~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F 178 (342)
T PF06433_consen 104 ADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF 178 (342)
T ss_dssp TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred cCCc-EEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence 7744 554443 345789999999998887752 22 2222 24444568899999999999888544332111 10
Q ss_pred ---cCC-eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec----------CCCCeeEEEEcCCCC
Q 010769 352 ---AAD-VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA----------HDKAVCTISYNPLVP 417 (502)
Q Consensus 352 ---~~~-v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~sp~~~ 417 (502)
..+ +..-++...+. .++--+-.|.|+-.|+..... .....+.. -.+.-.-+++++..
T Consensus 179 ~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~-------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~- 249 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSA-------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS- 249 (342)
T ss_dssp STTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSE-------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-
T ss_pred CCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcc-------cccCcccccCccccccCcCCcceeeeeecccc-
Confidence 111 11222322223 455567789999888876521 12222211 11334456777655
Q ss_pred CEEEEEeC---CC-------cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCcccc
Q 010769 418 NLLATGST---DK-------MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVL-AIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 418 ~~l~t~s~---dg-------~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ll-asg~~dg~i~vwd~~~~~~~~ 486 (502)
+.|++--. ++ .|-++|+.+.+......+. .++.+|+.+.+..=+| +....++.|.+||..+++.++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 33333221 22 2777888888743333332 4577899988764345 445568999999999999887
Q ss_pred ccc
Q 010769 487 NRF 489 (502)
Q Consensus 487 ~~~ 489 (502)
+.-
T Consensus 327 ~~~ 329 (342)
T PF06433_consen 327 SIE 329 (342)
T ss_dssp EE-
T ss_pred ehh
Confidence 653
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00041 Score=68.71 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=111.5
Q ss_pred EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE
Q 010769 291 VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS 367 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 367 (502)
+.+-|.. +.....+......+..-+|+|++..+....-.. ..+.++++.++.... .....+.-..-+|+|+|..+
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCccCCccCCCCCCEE
Confidence 4444433 444445544556677788999985544443333 348899998877654 33345556667899999988
Q ss_pred EEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCeeEEE
Q 010769 368 FVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM--VKLWDLSNNQPSCIA 443 (502)
Q Consensus 368 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~--i~vwd~~~~~~~~~~ 443 (502)
+++...+|. |+++|+... ....+....+.-+.-.|+|+|..++++.+..|. |.++++...... ..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~----------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-ri 321 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGK----------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RL 321 (425)
T ss_pred EEEECCCCCccEEEEcCCCC----------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Ee
Confidence 888888886 555566654 123343333334467899999666667666776 555566665532 22
Q ss_pred EecCCCCCEEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCcc
Q 010769 444 SRNPKAGAVFSVAFSEDSPFVLAIGGSKGK--LEIWDTLSDAG 484 (502)
Q Consensus 444 ~~~~~~~~v~~~~~spd~~~llasg~~dg~--i~vwd~~~~~~ 484 (502)
+... +.-..-.|+|+|.+++..+..+|. |.+.++.++..
T Consensus 322 T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 322 TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 2222 222277899999976665544454 77777766653
No 336
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.00 E-value=0.0006 Score=71.55 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=98.2
Q ss_pred CcEEEEE-ecCCcEEEEECCCCeeeEEeccCCCC-eEEEEEcCC----CCcEEEEEECCCcEEEEeCCCCCCcc-----c
Q 010769 279 RNILASA-SADKQVKIWDVAAGKCNLTLEHHTDK-VQAVAWNHH----SPQILLSGSFDRSVVMKDARISTHSG-----F 347 (502)
Q Consensus 279 ~~~l~sg-s~Dg~v~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~-----~ 347 (502)
.++|+.- .....|.-.|++.|+.+.....|... |..++-... .+...+.|-.+..+..||.|...... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 4454443 34578999999999999999877644 555543211 12345678888999999999754211 1
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK 427 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg 427 (502)
.........|++-+.+| .+++|+.+|.||+||- .+ .+....+++-..+|.+|..+.+| ++|++.+ +.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g--------~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~t 639 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LG--------KRAKTALPGLGDPIIGIDVTADG-KWILATC-KT 639 (794)
T ss_pred ccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cc--------hhhhhcCCCCCCCeeEEEecCCC-cEEEEee-cc
Confidence 12334567788777654 7999999999999994 33 24445566778999999999999 5554444 34
Q ss_pred cEEEEEC
Q 010769 428 MVKLWDL 434 (502)
Q Consensus 428 ~i~vwd~ 434 (502)
.+.|++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 6777775
No 337
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.95 E-value=0.0017 Score=59.48 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=110.0
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
++.++++++.++.|..||..++..+..... ...+...... . ...++.++.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~----------------------------~~~~~~~~~~-~-~~~v~v~~~ 84 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL----------------------------PGPISGAPVV-D-GGRVYVGTS 84 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC----------------------------SSCGGSGEEE-E-TTEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec----------------------------cccccceeee-c-ccccccccc
Confidence 577788888899999999976544332211 0011010111 2 236777778
Q ss_pred CCcEEEEECCCCeeeEEe-ccCC---CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecC----------
Q 010769 288 DKQVKIWDVAAGKCNLTL-EHHT---DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAA---------- 353 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~-~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------- 353 (502)
++.|..+|+.+|+.+..+ .... .....+.....+ ..++++..++.|..+|+++++..-.......
T Consensus 85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 85 DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred eeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 889999999999998874 3221 111122222224 6788888899999999998876432222111
Q ss_pred Ce-EEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEE
Q 010769 354 DV-ESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLW 432 (502)
Q Consensus 354 ~v-~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vw 432 (502)
.+ ..+.+. . . .++++..+|.+..+|+.++ ..++... ...+..+ ....+ ..|+.++.++.|..|
T Consensus 164 ~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg---------~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 164 DINGSPVIS-D-G-RVYVSSGDGRVVAVDLATG---------EKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYAL 227 (238)
T ss_dssp TEEEEEECC-T-T-EEEEECCTSSEEEEETTTT---------EEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEE
T ss_pred ccccceEEE-C-C-EEEEEcCCCeEEEEECCCC---------CEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEE
Confidence 11 223333 2 3 6777777776444499987 4445433 2223331 23445 677777799999999
Q ss_pred ECCCCC
Q 010769 433 DLSNNQ 438 (502)
Q Consensus 433 d~~~~~ 438 (502)
|+++++
T Consensus 228 d~~tG~ 233 (238)
T PF13360_consen 228 DLKTGK 233 (238)
T ss_dssp ETTTTE
T ss_pred ECCCCC
Confidence 999997
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00019 Score=71.84 Aligned_cols=154 Identities=12% Similarity=0.145 Sum_probs=103.2
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCCeeeE-EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce---
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAGKCNL-TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK--- 348 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--- 348 (502)
++... ..+++.|+.-|.|.+|+-..++... ...+..+.+..+..++.. .++++|+..|.|.++-+.........
T Consensus 40 c~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 40 CVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeec
Confidence 34444 4599999999999999966554322 222344556667788887 88999999999999988764433211
Q ss_pred ---EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769 349 ---WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 349 ---~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
..|+..|++++|++++. .+++|...|.|.+-.+..... . ......+..-.+.|..+.+.. .+|+.++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~-~----~~~~q~il~~ds~IVQlD~~q---~~LLVStl 188 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQA-F----LSKSQEILSEDSEIVQLDYLQ---SYLLVSTL 188 (726)
T ss_pred cccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhh-h----ccccceeeccCcceEEeeccc---ceehHhhh
Confidence 13567899999999876 799999999999888776200 0 133445555677888888775 33433333
Q ss_pred CCcEEEEECCCCC
Q 010769 426 DKMVKLWDLSNNQ 438 (502)
Q Consensus 426 dg~i~vwd~~~~~ 438 (502)
-. ..++++....
T Consensus 189 ~r-~~Lc~tE~et 200 (726)
T KOG3621|consen 189 TR-CILCQTEAET 200 (726)
T ss_pred hh-hheeecchhH
Confidence 33 3355555443
No 339
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=0.0028 Score=56.28 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=95.3
Q ss_pred cCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCC
Q 010769 275 NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAAD 354 (502)
Q Consensus 275 ~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 354 (502)
.++...+++.||..+.+.--|..+|+....-. -...+.+-+.- -| .+++.|.+.|.+++.+..++.....+.....-
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 34446789999999999999999998765432 12233332222 23 67999999999999999998665433333222
Q ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010769 355 VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL 434 (502)
Q Consensus 355 v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~ 434 (502)
-......+++. ++++|+.|++.+..|.++. .++++.+...+...+-++.|- +..|+.+...|.|.--..
T Consensus 96 k~~a~~d~~~g-lIycgshd~~~yalD~~~~---------~cVykskcgG~~f~sP~i~~g-~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 96 KVRAQCDFDGG-LIYCGSHDGNFYALDPKTY---------GCVYKSKCGGGTFVSPVIAPG-DGSLYAAITAGAVLAVTK 164 (354)
T ss_pred ccceEEcCCCc-eEEEecCCCcEEEeccccc---------ceEEecccCCceeccceecCC-CceEEEEeccceEEEEcc
Confidence 22334456555 8999999999999999986 667776544444444455552 244444555555444433
Q ss_pred C
Q 010769 435 S 435 (502)
Q Consensus 435 ~ 435 (502)
+
T Consensus 165 ~ 165 (354)
T KOG4649|consen 165 N 165 (354)
T ss_pred C
Confidence 3
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0052 Score=60.64 Aligned_cols=212 Identities=13% Similarity=0.114 Sum_probs=141.4
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCc
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHS 345 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~ 345 (502)
.-..++.++.+.+..++...++.|.+.|..+.+.......-. ....+++++++..+.++-. .++++.+.|..+....
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 345678888866677777777999999988887777664322 6778999999955555544 3788999998887766
Q ss_pred cceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769 346 GFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 346 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
.. ......-..++++|++...+++-..++.|.++|........ . ....... -...-..+.++|++.+..++...
T Consensus 154 ~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 AT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVG-VGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccc-cCCCCceEEECCCCCEEEEEecc
Confidence 54 33332338899999988666666689999999976542110 0 0000111 12334678899998545555444
Q ss_pred C--CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 426 D--KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 426 d--g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+ +.+...|..++............ ....+.++|+|.++.+.-+..+.+.+-|..+......
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 4 68999998887632211112222 4567899999997555545568899999888776554
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.85 E-value=0.0061 Score=60.74 Aligned_cols=232 Identities=14% Similarity=0.190 Sum_probs=112.0
Q ss_pred ccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccc
Q 010769 188 IIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTD 267 (502)
Q Consensus 188 ~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 267 (502)
....+|..+.+ +|+|+++++++ +|.-.|+...... ....+
T Consensus 30 ~~~~~p~~ls~-------npngr~v~V~g-~geY~iyt~~~~r--------------------------------~k~~G 69 (443)
T PF04053_consen 30 SCEIYPQSLSH-------NPNGRFVLVCG-DGEYEIYTALAWR--------------------------------NKAFG 69 (443)
T ss_dssp E-SS--SEEEE--------TTSSEEEEEE-TTEEEEEETTTTE--------------------------------EEEEE
T ss_pred CCCcCCeeEEE-------CCCCCEEEEEc-CCEEEEEEccCCc--------------------------------ccccC
Confidence 34445666655 79999999955 6777777732100 01235
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 347 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 347 (502)
.-..+.|.+. +.+|+-...++|.|+.--.......++. ...+..|-. | .+|+..+.+ .|.+||+.+++.+.
T Consensus 70 ~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~- 140 (443)
T PF04053_consen 70 SGLSFVWSSR--NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIR- 140 (443)
T ss_dssp E-SEEEE-TS--SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEE-
T ss_pred ceeEEEEecC--ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceee-
Confidence 5667889884 4577777788999974333333334432 123444433 5 666666544 89999999887654
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC--CCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA--KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
..... +|..|.|++++. +++..+. ..+.+++.... ..............+......|.+..|..+ -++.| +.
T Consensus 141 ~i~v~-~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt-T~ 214 (443)
T PF04053_consen 141 RIDVS-AVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT-TS 214 (443)
T ss_dssp EESS--E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--T
T ss_pred EEecC-CCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE-cC
Confidence 22222 389999999876 5555554 45666654321 000000000133444433677888999863 33444 33
Q ss_pred CCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 426 DKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 426 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
. .++. +..+....+..+. .++.=+...|... .+.....++.|..+.+..
T Consensus 215 ~-~lkY--l~~Ge~~~i~~ld---~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 215 N-HLKY--LVNGETGIIAHLD---KPLYLLGYLPKEN-RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp T-EEEE--EETTEEEEEEE-S---S--EEEEEETTTT-EEEEE-TT--EEEEE--H
T ss_pred C-eEEE--EEcCCcceEEEcC---CceEEEEEEccCC-EEEEEECCCCEEEEEECH
Confidence 3 6766 4455533344433 4566677777555 466678888888887653
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.83 E-value=0.0024 Score=62.64 Aligned_cols=213 Identities=16% Similarity=0.148 Sum_probs=117.7
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-------------------------------------------eeEE
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGK-------------------------------------------CNLT 304 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-------------------------------------------~~~~ 304 (502)
.|+.++|.+. ..-|+.|...|.|.||.....+ +...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 4888999998 4588999999999998653211 1111
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE--------eecCCeEEEEeCC---C----CCCEEE
Q 010769 305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW--------AVAADVESLAWDP---H----AEHSFV 369 (502)
Q Consensus 305 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~v~~~p---~----~~~~l~ 369 (502)
+....++|++++.+.-| +++.|..+|.+.|.|+|.+..+.... .....++++.|.. . ..-+++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22346899999998777 89999999999999999876543211 1223577787752 1 123789
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEE-EcCC--------------------CCCEEEEEeCCCc
Q 010769 370 VSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTIS-YNPL--------------------VPNLLATGSTDKM 428 (502)
Q Consensus 370 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~sp~--------------------~~~~l~t~s~dg~ 428 (502)
+|+..|.+.+|.+-..... ............+.++|..+. |+.+ .+.++++++ +..
T Consensus 160 vGTn~G~v~~fkIlp~~~g--~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~ 236 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNG--RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESD 236 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG---EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred EEeCCCCEEEEEEecCCCC--ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccc
Confidence 9999999999988521100 000011111124556665554 3211 123555544 667
Q ss_pred EEEEECCCCCeeEEEEecCCCCCEEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFS----EDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s----pd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
++++...+.+.. .......-....+.+- ..+.+.|++-..+|.|++|.+-.-+.+.+.
T Consensus 237 irv~~~~~~k~~--~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 237 IRVFKPPKSKGA--HKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp EEEE-TT---EE--EEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred eEEEeCCCCccc--ceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 999999887632 2222221223344453 123346888899999999999887776544
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.83 E-value=0.00053 Score=71.91 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=98.5
Q ss_pred cEEEEE-ECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCC------CCEEEEEeCCCeEEEEECCCCCCCCCCCCCC
Q 010769 323 QILLSG-SFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHA------EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQ 395 (502)
Q Consensus 323 ~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 395 (502)
++|+.. .....|+-.|+..++.+. .|.....+.-..+.|+. +...++|-.+..|..||.|.... +
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~-eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------k 565 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVE-EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------K 565 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEE-EeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-------c
Confidence 444433 346788888999888765 56555544444455531 23567788899999999997521 2
Q ss_pred ccEE---EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769 396 SSFT---LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 396 ~~~~---~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg 472 (502)
.+.. .-......+|++-+.+ .+||+|+.+|.||+||--..+ ....+++-..+|.+|..+.||+|+|||+ +.
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc--~t 639 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC--KT 639 (794)
T ss_pred eeeccccccccCCCceEEEecCC--ceEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee--cc
Confidence 2211 1123456777777765 589999999999999953322 3445566678999999999999988875 45
Q ss_pred cEEEEECC
Q 010769 473 KLEIWDTL 480 (502)
Q Consensus 473 ~i~vwd~~ 480 (502)
.|.|+++.
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 78888874
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.011 Score=58.82 Aligned_cols=174 Identities=10% Similarity=0.125 Sum_probs=89.5
Q ss_pred cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe-------ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe-
Q 010769 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-------EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD- 338 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd- 338 (502)
+.|.++.|+.+ . .|+.-..||++++||+.... ...+ .-....+....+...| -.++ ..++.+.+..
T Consensus 81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvL--t~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG-IVVL--TGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCC-C-eEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC-EEEE--CCCCeEEEEeC
Confidence 78999999886 4 56677899999999986333 1111 1111222223333345 3333 3344444432
Q ss_pred CCCCCCccceEeecCCeE---------E-EEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee
Q 010769 339 ARISTHSGFKWAVAADVE---------S-LAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC 408 (502)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~---------~-v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~ 408 (502)
.................. . ..++.+.. ..+....++.+.+.+-... ..+. ..+++.
T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~------------~~i~-~~~~i~ 220 (410)
T PF04841_consen 155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSF------------KQID-SDGPII 220 (410)
T ss_pred ccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccc------------cccc-CCCCeE
Confidence 221111010000011000 0 12232222 3333344455554433221 0111 246899
Q ss_pred EEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769 409 TISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 409 ~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
.+++||++ ++||.-..+|.+.+.+..-.+..+..... .......+.|+-+..
T Consensus 221 ~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 221 KIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence 99999998 89999999999999876655533333222 234556777776653
No 345
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.80 E-value=0.0096 Score=58.37 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=57.1
Q ss_pred cEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCC----CEEEEEEc--------------
Q 010769 397 SFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAG----AVFSVAFS-------------- 458 (502)
Q Consensus 397 ~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~~s-------------- 458 (502)
.+.+......+.+++.+|.+ ++.|+...=|.|.++|+.++....+ .++... .+....-.
T Consensus 300 r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrm--WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRM--WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhh--hccCccceEEEEEeecccccccccccccCCCC
Confidence 34455566779999999997 8888877779999999988753221 111111 01000000
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 459 EDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 459 pd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
....+|++=+-..|.|.||.++++..+...
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 012345666677899999999999987654
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.80 E-value=0.0056 Score=62.20 Aligned_cols=159 Identities=10% Similarity=0.039 Sum_probs=98.5
Q ss_pred ecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE------------------------
Q 010769 274 WNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------------------------ 329 (502)
Q Consensus 274 ~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~------------------------ 329 (502)
+.|++..+..+.-..+.+.+.|..+.+...++.- ......+++++++ .++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3445332223333446677778777766665542 2233455666666 3443332
Q ss_pred ----------------CCCcEEEEeCCC----CCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 010769 330 ----------------FDRSVVMKDARI----STHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDP 389 (502)
Q Consensus 330 ----------------~dg~i~vwd~~~----~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 389 (502)
.++.|.+.|.++ ................+.++|++..+++++..+..|.++|+.+.....
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 124578888776 333444556777888999999999888888889999999998863210
Q ss_pred CC--CCC-CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 390 DS--TSQ-QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 390 ~~--~~~-~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
.. ... ..+..... ...-...+|.+.| +...|...|..|..|++..
T Consensus 358 ~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 00 000 11222222 2233567788887 7888888899999999876
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.80 E-value=0.033 Score=55.89 Aligned_cols=254 Identities=14% Similarity=0.203 Sum_probs=130.8
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCC-
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEP- 219 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg- 219 (502)
.+..+.++|++++||.+-..+..-...+++++...+ .+.. .....+.+ ..+.| .++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~-d~i~~~~~-~~~~W-------~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLP-DGIENPKF-SSVSW-------SDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEE-EEEEEEES-EEEEE-------CTTSSEEEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcC-Cccccccc-ceEEE-------eCCCCEEEEEEeCcc
Confidence 345788999999999886555443567777777665 3322 11111111 22777 57777666554332
Q ss_pred ----------cEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCC
Q 010769 220 ----------AIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADK 289 (502)
Q Consensus 220 ----------~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg 289 (502)
.|+.|.+.+..... ..++ ....+......+..+++++.+++......
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d-~lvf----------------------e~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSED-ELVF----------------------EEPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG--EEEE----------------------C-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred cccccCCCCcEEEEEECCCChHhC-eeEE----------------------eecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 36666665322110 1111 11112122567888999665555454433
Q ss_pred ---cEEEEECCCC----eeeEEeccCCCCe-EEEEEcCCCCcEEEEEE---CCCcEEEEeCCCCCCcc---ceEeecCC-
Q 010769 290 ---QVKIWDVAAG----KCNLTLEHHTDKV-QAVAWNHHSPQILLSGS---FDRSVVMKDARISTHSG---FKWAVAAD- 354 (502)
Q Consensus 290 ---~v~vwd~~~~----~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~---~~~~~~~~- 354 (502)
.|.+.++..+ .....+......+ ..+... .+ .+++... ..+.|...++....... ....+...
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 4778888764 2233333333334 334333 33 4554443 24677777887766421 23334443
Q ss_pred -eEEEEeCCCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEEEeC---CC
Q 010769 355 -VESLAWDPHAEHSFVVSLEDG--TIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLATGST---DK 427 (502)
Q Consensus 355 -v~~v~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t~s~---dg 427 (502)
+..+.. .+..+++....++ .|+++++... .....+.. -.+.|..+...+.++.+.++.+. -+
T Consensus 328 ~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~---------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~ 396 (414)
T PF02897_consen 328 SLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG---------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPP 396 (414)
T ss_dssp EEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T---------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEE
T ss_pred eEEEEEE--ECCEEEEEEEECCccEEEEEECCCC---------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCC
Confidence 444444 3455666666666 4788888822 23333332 23445666666666555555443 35
Q ss_pred cEEEEECCCCCeeEE
Q 010769 428 MVKLWDLSNNQPSCI 442 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~ 442 (502)
++..||+.+++...+
T Consensus 397 ~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 397 TVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEETTTTCEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 688899998875443
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.79 E-value=0.021 Score=58.42 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=126.0
Q ss_pred CEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccce-eeEEecCCCCcEEEEEe--
Q 010769 210 NFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSV-LGLAWNKEFRNILASAS-- 286 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~~l~sgs-- 286 (502)
..+++++.+|.|.-+|..+++.+-....... . .....+ .+..+.. .+++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~---------------~-------~~~~~i~ssP~v~~---~~v~vg~~~ 165 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQ---------------V-------PPGYTMTGAPTIVK---KLVIIGSSG 165 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCC---------------c-------CcceEecCCCEEEC---CEEEEeccc
Confidence 6888888999999999987654432111000 0 000001 0111111 2444443
Q ss_pred -------cCCcEEEEECCCCeeeEEeccCCCC--------------------e-EEEEEcCCCCcEEEEEECCC------
Q 010769 287 -------ADKQVKIWDVAAGKCNLTLEHHTDK--------------------V-QAVAWNHHSPQILLSGSFDR------ 332 (502)
Q Consensus 287 -------~Dg~v~vwd~~~~~~~~~~~~h~~~--------------------v-~~l~~~~~~~~~l~s~~~dg------ 332 (502)
.++.|..+|..+|+.+..+...... + .+..+.+.+ .+++.++.++
T Consensus 166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~ 244 (488)
T cd00216 166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWG 244 (488)
T ss_pred cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccC
Confidence 4678999999999988776532110 1 122333334 4666676554
Q ss_pred ------------cEEEEeCCCCCCccceEeecCCeE------EEEeC----CCC--CCEEEEEeCCCeEEEEECCCCCCC
Q 010769 333 ------------SVVMKDARISTHSGFKWAVAADVE------SLAWD----PHA--EHSFVVSLEDGTIKGFDIRTAKSD 388 (502)
Q Consensus 333 ------------~i~vwd~~~~~~~~~~~~~~~~v~------~v~~~----p~~--~~~l~~~~~dg~i~i~d~~~~~~~ 388 (502)
.|..+|..+++..-.......... ...+. -++ ...+++++.+|.+..+|.+++
T Consensus 245 ~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG--- 321 (488)
T cd00216 245 GRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG--- 321 (488)
T ss_pred CccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---
Confidence 688888887765421111111000 00110 111 125788889999999999998
Q ss_pred CCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE------------------eCCCcEEEEECCCCCeeEEEEecCC--
Q 010769 389 PDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG------------------STDKMVKLWDLSNNQPSCIASRNPK-- 448 (502)
Q Consensus 389 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~------------------s~dg~i~vwd~~~~~~~~~~~~~~~-- 448 (502)
+.++..... ...++.+| ..++.+ ..+|.|.-.|+.+++. +......
T Consensus 322 ------~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~--~W~~~~~~~ 387 (488)
T cd00216 322 ------KLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV--VWEKREGTI 387 (488)
T ss_pred ------cEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE--eeEeeCCcc
Confidence 556554321 11223333 222221 2357788888888873 3333221
Q ss_pred C------CCE--EEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccccc
Q 010769 449 A------GAV--FSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 449 ~------~~v--~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
. .+. ..+.. .+. +|.+++.+|.|+.+|..+++.+-+.
T Consensus 388 ~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 388 RDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred ccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCCceeeEE
Confidence 0 111 11222 334 4777889999999999999987553
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.77 E-value=0.015 Score=54.75 Aligned_cols=238 Identities=18% Similarity=0.164 Sum_probs=128.5
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.++.|++|+.+| |.++++..... +.. ..+...|..|...+.. +.|++-+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~--~~~--------------------------i~~~~~I~ql~vl~~~-~~llvLs- 54 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK--PTR--------------------------ILKLSSITQLSVLPEL-NLLLVLS- 54 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc--cee--------------------------EeecceEEEEEEeccc-CEEEEEc-
Confidence 589999999998 88988821111 000 0122339999999984 4554443
Q ss_pred CCcEEEEECCCCeeeEEe--------------ccCCCCeEEEE--EcCCCCcEEEEEECCCcEEEEeCCCCC----Cccc
Q 010769 288 DKQVKIWDVAAGKCNLTL--------------EHHTDKVQAVA--WNHHSPQILLSGSFDRSVVMKDARIST----HSGF 347 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~--------------~~h~~~v~~l~--~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~ 347 (502)
|+.+.++++..-...... ......+...+ -...+ ...++.....+|.+|...... ....
T Consensus 55 d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~k 133 (275)
T PF00780_consen 55 DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLK 133 (275)
T ss_pred CCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeE
Confidence 599999998754433210 11233444444 12333 344445555689998887642 1223
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCc---cEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQS---SFTLHAHDKAVCTISYNPLVPNLLATGS 424 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~sp~~~~~l~t~s 424 (502)
.......+.+++|.+ ..+++|..++ ..+.|+.++....-...... .........++..+.... + .+|++.
T Consensus 134 e~~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~- 206 (275)
T PF00780_consen 134 EISLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N-EFLLCY- 206 (275)
T ss_pred EEEcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c-eEEEEe-
Confidence 456678899999984 3577776544 77888886532110000000 000111223444444443 3 455543
Q ss_pred CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccC
Q 010769 425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSK 491 (502)
Q Consensus 425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~ 491 (502)
+..-.+.|... ++.....+.- ...+.++++. .+|+++. +. +.|.||++.+++.++..-..
T Consensus 207 -~~~g~fv~~~G-~~~r~~~i~W-~~~p~~~~~~--~pyli~~-~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 207 -DNIGVFVNKNG-EPSRKSTIQW-SSAPQSVAYS--SPYLIAF-SS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred -cceEEEEcCCC-CcCcccEEEc-CCchhEEEEE--CCEEEEE-CC-CEEEEEECcCCcEEEEEECC
Confidence 33344445433 3222112221 2245556663 4565654 33 56999999999888766543
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.75 E-value=0.0013 Score=50.97 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=72.1
Q ss_pred eeeEEe---cCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc
Q 010769 269 VLGLAW---NKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 345 (502)
Q Consensus 269 V~~l~~---~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 345 (502)
|++|++ ..++.+.|+.||.|..|++|+- ...+..+. ..+.|++|.-...+ .|+.+..+|+|-+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~---R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ---R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc---e
Confidence 445544 4566789999999999999983 46677776 46778888877664 699999999999997632 1
Q ss_pred cceEeecCCeEEEEeC---CCCCCEEEEEeCCCeEE
Q 010769 346 GFKWAVAADVESLAWD---PHAEHSFVVSLEDGTIK 378 (502)
Q Consensus 346 ~~~~~~~~~v~~v~~~---p~~~~~l~~~~~dg~i~ 378 (502)
......+..+.++.+. .+|..-|++|-.+|.|-
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1222334456666553 34445799999999874
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.011 Score=58.91 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=93.3
Q ss_pred cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe---ecCCe-----EEEEeC
Q 010769 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA---VAADV-----ESLAWD 361 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v-----~~v~~~ 361 (502)
.|+||+. .|+.+.++.--.+.+.++.|+.+. .|++...||.+++||+.... ..... ....| ....+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC
Confidence 5999984 567777765445899999998865 57778899999999987433 11111 11112 112222
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCC-CCC-CCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe
Q 010769 362 PHAEHSFVVSLEDGTIKGFDIRTAKSD-PDS-TSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP 439 (502)
Q Consensus 362 p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~ 439 (502)
. ++ +++-+.++.+.+..--..... ... ...........+........++.+. ...+....++.+.+.+-...+
T Consensus 137 ~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~- 211 (410)
T PF04841_consen 137 K-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFK- 211 (410)
T ss_pred C-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccccc-
Confidence 2 22 444445565555432221100 000 0000000011111110012233333 334444444555544322211
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 440 SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 440 ~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
... ..+++..|+.||++++ ||.-..+|.+.|....-.+.+
T Consensus 212 ----~i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 212 ----QID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred ----ccc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECccccee
Confidence 011 2468999999999995 888888999988876554444
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.71 E-value=0.0037 Score=61.39 Aligned_cols=252 Identities=12% Similarity=0.060 Sum_probs=125.0
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcc----------hhhhhh-ccc----c-CCccccccccCCcccce
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGID----------EEKKKK-KSK----K-GKKSSIKYKKGSHTDSV 269 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~----------~~~~~~-~~~----~-~~~~~~~~~~~~h~~~V 269 (502)
++...-||+|...|.|.||.+...+...........+ ...+.. ... . +....+...+....++|
T Consensus 10 a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~v 89 (395)
T PF08596_consen 10 APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPV 89 (395)
T ss_dssp ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SE
T ss_pred cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcE
Confidence 4667789999999999999875432221000000000 000000 000 0 11123333445568999
Q ss_pred eeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe--cc------CCCCeEEEEEcC---CC----CcEEEEEECCCcE
Q 010769 270 LGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL--EH------HTDKVQAVAWNH---HS----PQILLSGSFDRSV 334 (502)
Q Consensus 270 ~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~--~~------h~~~v~~l~~~~---~~----~~~l~s~~~dg~i 334 (502)
++++.+.- + ++|.|..+|++.|.|++....+..- .. ....|+++.|.- .+ .-.|++|+..|.+
T Consensus 90 tal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v 167 (395)
T PF08596_consen 90 TALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNV 167 (395)
T ss_dssp EEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEE
T ss_pred eEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCE
Confidence 99999865 4 9999999999999999887776552 22 345688888861 11 1478899999999
Q ss_pred EEEeCCCC--C-CccceE----eecCCeEEEE-eCCCC-------------------CCEEEEEeCCCeEEEEECCCCCC
Q 010769 335 VMKDARIS--T-HSGFKW----AVAADVESLA-WDPHA-------------------EHSFVVSLEDGTIKGFDIRTAKS 387 (502)
Q Consensus 335 ~vwd~~~~--~-~~~~~~----~~~~~v~~v~-~~p~~-------------------~~~l~~~~~dg~i~i~d~~~~~~ 387 (502)
.+|.+.-. . ...... .+.+.+..+. ++.+. -.-+++......++++...+.
T Consensus 168 ~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~-- 245 (395)
T PF08596_consen 168 LTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS-- 245 (395)
T ss_dssp EEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----
T ss_pred EEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC--
Confidence 99987521 1 111111 2234444443 32211 012444455778999988765
Q ss_pred CCCCCCCCccEEEecCCCCeeEEEEcC----CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC--CCCCEEEEEEcCCC
Q 010769 388 DPDSTSQQSSFTLHAHDKAVCTISYNP----LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP--KAGAVFSVAFSEDS 461 (502)
Q Consensus 388 ~~~~~~~~~~~~~~~h~~~v~~l~~sp----~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~spd~ 461 (502)
+...........+.++.+-+ .+...|++-..+|.|++|.+..-+......+.. ....+....++++|
T Consensus 246 -------k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 246 -------KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp --------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred -------cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 33333222222333344421 123788888999999999999887544444321 11234456778999
Q ss_pred CcEEEEEe
Q 010769 462 PFVLAIGG 469 (502)
Q Consensus 462 ~~llasg~ 469 (502)
.. ++-.|
T Consensus 319 di-~~~~g 325 (395)
T PF08596_consen 319 DI-FYWTG 325 (395)
T ss_dssp -E-EEE-S
T ss_pred CE-EEEeC
Confidence 84 44433
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0032 Score=61.44 Aligned_cols=145 Identities=18% Similarity=0.258 Sum_probs=100.9
Q ss_pred cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCC------EEEEEeCCCeEEEEECCCCCCCCCCCCCCc
Q 010769 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEH------SFVVSLEDGTIKGFDIRTAKSDPDSTSQQS 396 (502)
Q Consensus 323 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 396 (502)
-+|.++..-..++-.|+..++.+. .|.....|+-+.+.|+... .-++|-.+..|.-||.|-... ..
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVe-EWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~k 418 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVE-EWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NK 418 (644)
T ss_pred eEeeCCCCcCcceeeecccceeee-EeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------ce
Confidence 345556666778888888887665 6777777888888886431 345677899999999995421 12
Q ss_pred cEEEecCC----CCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 010769 397 SFTLHAHD----KAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG 472 (502)
Q Consensus 397 ~~~~~~h~----~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg 472 (502)
+....+|. ....|++-.. ..++|+||.+|.|++||--..+ ....+++-..+|..+..+.+|.++|+|+ +.
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc--~t 492 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC--KT 492 (644)
T ss_pred eeeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec--cc
Confidence 22223332 3345555554 4699999999999999973332 3445677788999999999999877754 55
Q ss_pred cEEEEECCC
Q 010769 473 KLEIWDTLS 481 (502)
Q Consensus 473 ~i~vwd~~~ 481 (502)
.+.+-++.-
T Consensus 493 yLlLi~t~~ 501 (644)
T KOG2395|consen 493 YLLLIDTLI 501 (644)
T ss_pred EEEEEEEec
Confidence 788877643
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.69 E-value=0.038 Score=52.13 Aligned_cols=251 Identities=15% Similarity=0.157 Sum_probs=127.7
Q ss_pred cccccccCCCceEEEEEecC--Cc---ceeEEEEEecCCCCCCceeeeeccccCCCcceee-eecCCCCCCCCCCEEEEe
Q 010769 142 LEDMTINPNDAVIVCARNED--DV---SHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMA-WLDCPLKDREKGNFMAVG 215 (502)
Q Consensus 142 v~~~~~~p~~~~l~~~~~~~--~~---~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~~~s~~~~~la~g 215 (502)
.-.+.++|+++.+.++.+-- .. .+=-|-+|+.. .|....++.+|..|-... -.....+.+.+++++++.
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-----TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-----TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-----TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-----cCcccceEecCCcchheecccccceEEccCCcEEEEE
Confidence 34467899999988764210 00 00023334433 556666777776422111 011112235566666655
Q ss_pred cCC--CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEE
Q 010769 216 SME--PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKI 293 (502)
Q Consensus 216 ~~d--g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~v 293 (502)
... ..|.|-|+....-+.. -..--|...-|.+..-+.+-|.||++.-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~e-------------------------------i~~PGC~~iyP~~~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGE-------------------------------IDTPGCWLIYPSGNRGFSMLCGDGSLLT 161 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEE-------------------------------EEGTSEEEEEEEETTEEEEEETTSCEEE
T ss_pred ccCCCCeEEEEECCCCceeee-------------------------------ecCCCEEEEEecCCCceEEEecCCceEE
Confidence 443 3555666543111110 0111122223443446888899999999
Q ss_pred EECC-CCeeeEEe----ccCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEee-----------cCCe
Q 010769 294 WDVA-AGKCNLTL----EHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAV-----------AADV 355 (502)
Q Consensus 294 wd~~-~~~~~~~~----~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~-----------~~~v 355 (502)
..+. .|+...+. ..-..++. .-.+...+ ..++-.++.|.|+-.|+....... ..+.. ++.-
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 9887 55544222 11122222 22344444 345557889999998887654221 11111 2233
Q ss_pred EEEEeCCCCCCEEEEEe-------CCC--eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEE-eC
Q 010769 356 ESLAWDPHAEHSFVVSL-------EDG--TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATG-ST 425 (502)
Q Consensus 356 ~~v~~~p~~~~~l~~~~-------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~-s~ 425 (502)
.-+++++..+.+++.-. .++ .|-+||+.+. +.+.++.. ..++.+|+.+.+..-+|++. ..
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAG 310 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEEETT
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEEcCC
Confidence 45667765443333221 122 3667777775 66666653 34578999998765566554 45
Q ss_pred CCcEEEEECCCCCe
Q 010769 426 DKMVKLWDLSNNQP 439 (502)
Q Consensus 426 dg~i~vwd~~~~~~ 439 (502)
++.+.+||..+++.
T Consensus 311 ~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 311 DGTLDVYDAATGKL 324 (342)
T ss_dssp TTEEEEEETTT--E
T ss_pred CCeEEEEeCcCCcE
Confidence 78999999999984
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.68 E-value=0.059 Score=51.83 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=90.0
Q ss_pred cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEEC---CCc-EEEEeCCCCCCccce-Eee--cCCeEEEEeCC
Q 010769 290 QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSF---DRS-VVMKDARISTHSGFK-WAV--AADVESLAWDP 362 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~~~~-~~~--~~~v~~v~~~p 362 (502)
.|.--|+.+|+....+. -+..+..+.|+|..+.+|+-|-. +.. -+||-+++....... ..+ ...+..=-|.|
T Consensus 169 ~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred eEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 45566777777654444 46678889999998776666533 332 366766543321111 111 12234446899
Q ss_pred CCCCEEEEEeC----CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCC-----------
Q 010769 363 HAEHSFVVSLE----DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDK----------- 427 (502)
Q Consensus 363 ~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg----------- 427 (502)
+|..+++.+.. +..|.-+|+.+.. ... +. .......+-.++++ .+++-=+.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~---------~~~-~~-~~p~~~H~~ss~Dg-~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGE---------RRR-LM-EMPWCSHFMSSPDG-KLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT-----------EEE-EE-EE-SEEEEEE-TTS-SEEEEEE--------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCC---------ceE-EE-eCCceeeeEEcCCC-CEEEecCCCCCccccccccce
Confidence 99877776542 3357777777652 111 11 11235556667777 6665534332
Q ss_pred -----cEEEEECCCCCeeEEEEe-------cCCCC-CEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 428 -----MVKLWDLSNNQPSCIASR-------NPKAG-AVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 428 -----~i~vwd~~~~~~~~~~~~-------~~~~~-~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
.|+++++..++...+... .++.. .=....|+||++++|.++...|...||=+.
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 466788877664333322 11111 124578999999999999999988887553
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.016 Score=57.11 Aligned_cols=208 Identities=18% Similarity=0.168 Sum_probs=135.4
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF 347 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 347 (502)
....+...+.+....++-.....+.+.+............-...-..+..++.+.+.+++...++.|.+.|..+.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~- 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG- 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-
Confidence 4556677777544444444444566655552222222221114456788888886677777778999999977655443
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEe--CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~ 425 (502)
..........++++|++..+.++-. .++.+.+.|..+. ........-..+ ..+++.|++...+++-..
T Consensus 111 ~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred EeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEEecCCCc-ceEEECCCCCeEEEEecC
Confidence 3334447788999998875555555 3788999998876 444444443345 899999999556666668
Q ss_pred CCcEEEEECCCCCeeEEEE---ecCCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCccccc
Q 010769 426 DKMVKLWDLSNNQPSCIAS---RNPKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIWDTLSDAGISN 487 (502)
Q Consensus 426 dg~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~spd~~~llasg~~d--g~i~vwd~~~~~~~~~ 487 (502)
++.|.+.|........ .. .......-..+.++|++.++.++-..+ +.+...|..++.....
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 8999999977765221 11 111123346789999999766665555 6899999988777655
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.66 E-value=0.017 Score=57.71 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=106.5
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCc
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPA 220 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~ 220 (502)
....+.++|+|+.+++++ ++ +-.+|..... .... .+......| .+ .+.+|+-...+.
T Consensus 34 ~p~~ls~npngr~v~V~g-~g-----eY~iyt~~~~-----r~k~----~G~g~~~vw-------~~-~n~yAv~~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCG-DG-----EYEIYTALAW-----RNKA----FGSGLSFVW-------SS-RNRYAVLESSST 90 (443)
T ss_dssp --SEEEE-TTSSEEEEEE-TT-----EEEEEETTTT-----EEEE----EEE-SEEEE--------T-SSEEEEE-TTS-
T ss_pred CCeeEEECCCCCEEEEEc-CC-----EEEEEEccCC-----cccc----cCceeEEEE-------ec-CccEEEEECCCe
Confidence 357899999999999943 44 3334432211 1111 111245566 34 444666666889
Q ss_pred EEEe-eCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCC
Q 010769 221 IEIW-DLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 221 I~iw-dl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~ 299 (502)
|.|+ ++.... . + ...+ ...+..|-. +.+|+..+. +.|.+||+.++
T Consensus 91 I~I~kn~~~~~-~-----------------------k--~i~~---~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~ 136 (443)
T PF04053_consen 91 IKIYKNFKNEV-V-----------------------K--SIKL---PFSVEKIFG----GNLLGVKSS-DFICFYDWETG 136 (443)
T ss_dssp EEEEETTEE-T-T---------------------------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT-
T ss_pred EEEEEcCcccc-c-----------------------e--EEcC---CcccceEEc----CcEEEEECC-CCEEEEEhhHc
Confidence 9996 442100 0 0 0011 112333322 345655554 48999999999
Q ss_pred eeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC-----------CCccceEeecCCeEEEEeCCCCCCEE
Q 010769 300 KCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS-----------THSGFKWAVAADVESLAWDPHAEHSF 368 (502)
Q Consensus 300 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~v~~v~~~p~~~~~l 368 (502)
+.++.+... +|..+.|++++ .+++..+. ..+.+++.... ............|.+.+|..+ .|
T Consensus 137 ~~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~f 209 (443)
T PF04053_consen 137 KLIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CF 209 (443)
T ss_dssp -EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EE
T ss_pred ceeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EE
Confidence 999999733 48999999998 66666654 46777665432 011222233678999999864 45
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769 369 VVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
+-.+.. .|+. +..+ -...+..-..++.=+.+.|.. +.+.....++.|..+.+.
T Consensus 210 iYtT~~-~lkY--l~~G----------e~~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 210 IYTTSN-HLKY--LVNG----------ETGIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT-EEEE--EETT----------EEEEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--
T ss_pred EEEcCC-eEEE--EEcC----------CcceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEEC
Confidence 544444 7766 3333 223333335566667777754 667777777777777654
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00026 Score=70.10 Aligned_cols=95 Identities=16% Similarity=0.310 Sum_probs=80.8
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-AVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 343 (502)
-...|.-+.|+|. ..++|.+..+|.|.+..++ .+.+.++..|...++ +++|.|+| ++|+.|-.||+|++.|+.++.
T Consensus 19 l~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCC
Confidence 3456888999999 6799999999999999988 788888987888887 99999998 999999999999999999877
Q ss_pred Cccc-eEeecCCeEEEEeCC
Q 010769 344 HSGF-KWAVAADVESLAWDP 362 (502)
Q Consensus 344 ~~~~-~~~~~~~v~~v~~~p 362 (502)
.... ......+|.++-|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 6542 245567788888875
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.021 Score=52.18 Aligned_cols=202 Identities=15% Similarity=0.260 Sum_probs=105.9
Q ss_pred cccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCC--cceeeeecCCCCCCCCCCEEEEecC
Q 010769 140 EDLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAF--PLCMAWLDCPLKDREKGNFMAVGSM 217 (502)
Q Consensus 140 ~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~w~~~~~~~s~~~~~la~g~~ 217 (502)
++++.++|.|+.+.|++...+.. .|+.++... .+... +.+..+ +=.+++ -.++.|+++--.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~----~i~els~~G----~vlr~--i~l~g~~D~EgI~y-------~g~~~~vl~~Er 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPG----EIYELSLDG----KVLRR--IPLDGFGDYEGITY-------LGNGRYVLSEER 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTT----EEEEEETT------EEEE--EE-SS-SSEEEEEE--------STTEEEEEETT
T ss_pred CCccccEEcCCCCeEEEEECCCC----EEEEEcCCC----CEEEE--EeCCCCCCceeEEE-------ECCCEEEEEEcC
Confidence 45999999999887777765542 677777643 22211 112221 123444 245667776666
Q ss_pred CCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCcccccccc-CCcccceeeEEecCCCCcEEEEEecCCcEEEEEC
Q 010769 218 EPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKK-GSHTDSVLGLAWNKEFRNILASASADKQVKIWDV 296 (502)
Q Consensus 218 dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~ 296 (502)
++.+.++++........... .......+ ..+...+-.|+|.|.+. .|+.+-...-..||.+
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~ 146 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRAD-----------------VQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEV 146 (248)
T ss_dssp TTEEEEEEE----TT--EEE-----------------EEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEE
T ss_pred CCcEEEEEEeccccccchhh-----------------ceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEE
Confidence 89999998854221111100 01111111 24566799999999844 5556666666677766
Q ss_pred CC---CeeeEE--------eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec----------CCe
Q 010769 297 AA---GKCNLT--------LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA----------ADV 355 (502)
Q Consensus 297 ~~---~~~~~~--------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------~~v 355 (502)
.. ...+.. .......+.+++++|..+++++.+..+..|..+|. .++... ..... ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 147 NGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp ESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGGG-SS---SE
T ss_pred ccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCcccCcccccCCc
Confidence 53 211111 11234568899999998788888888999999994 444332 22211 357
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEE
Q 010769 356 ESLAWDPHAEHSFVVSLEDGTIKGF 380 (502)
Q Consensus 356 ~~v~~~p~~~~~l~~~~~dg~i~i~ 380 (502)
..|+|.++|. +++.++-+..++|
T Consensus 225 EGIa~d~~G~--LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGN--LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT----EEEEETTTEEEEE
T ss_pred cEEEECCCCC--EEEEcCCceEEEe
Confidence 8999999763 6666676666554
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.60 E-value=0.011 Score=56.98 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=89.9
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCe-eeEEec-cCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGK-CNLTLE-HHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI 341 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~-~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 341 (502)
...++|++|+-.. + .|+.+. .+.|.+|++...+ ....-. .....++++... + ++++.|..-..+.++..+.
T Consensus 86 ~~~g~V~ai~~~~--~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 86 EVKGPVTAICSFN--G-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EESS-EEEEEEET--T-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEET
T ss_pred eecCcceEhhhhC--C-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEc
Confidence 3568899998763 3 344433 4789999998777 333222 123367777665 3 5899999988898886554
Q ss_pred CCC-ccceEe--ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEE---EEcC
Q 010769 342 STH-SGFKWA--VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTI---SYNP 414 (502)
Q Consensus 342 ~~~-~~~~~~--~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l---~~sp 414 (502)
... ...... ....++++.+-+++. .++++..+|.|.++.....................- ....|+++ ++.|
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence 222 111111 234578888886664 899999999999998864221111100011111222 24557777 5555
Q ss_pred --CCC-----CEEEEEeCCCcEEEE
Q 010769 415 --LVP-----NLLATGSTDKMVKLW 432 (502)
Q Consensus 415 --~~~-----~~l~t~s~dg~i~vw 432 (502)
.+. ..++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 221 247777888888743
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.00012 Score=63.71 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=82.4
Q ss_pred cEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769 323 QILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 402 (502)
Q Consensus 323 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 402 (502)
..+...+.+|.|+-++++..+........ +.+..-.+.....+++|+.+|.|++|...... ...-....
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~---~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s 99 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERF---IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS 99 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhh---hhcceeecccCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence 34566677889988888765433221111 11111111223369999999999999887331 11111122
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC-CCEEEEEEcCCCCcEEEEE--eCCCcEEEEEC
Q 010769 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA-GAVFSVAFSEDSPFVLAIG--GSKGKLEIWDT 479 (502)
Q Consensus 403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~llasg--~~dg~i~vwd~ 479 (502)
....|.++.-.-....+.++++.+|.|+.|++.-++. +-....|. .++..+..+..+. +++.+ |.+..++.|++
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcch
Confidence 2223333322222225899999999999999988873 33333444 3444444444445 35555 66667777777
Q ss_pred CCCc
Q 010769 480 LSDA 483 (502)
Q Consensus 480 ~~~~ 483 (502)
....
T Consensus 177 e~~~ 180 (238)
T KOG2444|consen 177 EKIK 180 (238)
T ss_pred hhhh
Confidence 5433
No 362
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.57 E-value=0.031 Score=54.62 Aligned_cols=201 Identities=16% Similarity=0.204 Sum_probs=106.1
Q ss_pred ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe-cc-------C---------CCCeEEEEEcCCCCcEEEEE
Q 010769 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL-EH-------H---------TDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~-------h---------~~~v~~l~~~~~~~~~l~s~ 328 (502)
...+....|+|+ ++.++-.. ++.|.++++.++...+.- .+ - -+.-..+-|+|++ +.|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEE
Confidence 567889999999 45666554 578999998877544321 12 0 1223578899999 555443
Q ss_pred E-CCCc-----------------------------------EEEEeCCCCCCccceEe-----ecCCeEEEEeCCCCCCE
Q 010769 329 S-FDRS-----------------------------------VVMKDARISTHSGFKWA-----VAADVESLAWDPHAEHS 367 (502)
Q Consensus 329 ~-~dg~-----------------------------------i~vwd~~~~~~~~~~~~-----~~~~v~~v~~~p~~~~~ 367 (502)
. .+.. +.++++.+++....... ...-+..+.|.+++..+
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 3 2322 23344444332211111 12237788898876523
Q ss_pred EEE-EeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCe---eEEEEc-CCCCCEEEEEeCCCcEEE--EECCCC
Q 010769 368 FVV-SLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV---CTISYN-PLVPNLLATGSTDKMVKL--WDLSNN 437 (502)
Q Consensus 368 l~~-~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~s-p~~~~~l~t~s~dg~i~v--wd~~~~ 437 (502)
++. ...+. .+.++|..++.. ..+. .....+.| ..+.|. +++..+|.....+|.-+| ++...+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~-------~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGET-------RVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTC-------EEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred EEEEcccCCCEEEEEEEECCCCce-------eEEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 332 23222 366677766521 2222 22233333 345554 666677777778876544 555555
Q ss_pred CeeEEEEecCCCCCEEE-EEEcCCCCcEEEEEeCCC--cEEEEECC
Q 010769 438 QPSCIASRNPKAGAVFS-VAFSEDSPFVLAIGGSKG--KLEIWDTL 480 (502)
Q Consensus 438 ~~~~~~~~~~~~~~v~~-~~~spd~~~llasg~~dg--~i~vwd~~ 480 (502)
. ...+....-.|.. +.|++++..++.++..++ .-.||.+.
T Consensus 271 ~---~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 271 K---PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp E---EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred c---eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 4 3344444555744 778898887777777633 34444443
No 363
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.54 E-value=0.12 Score=54.63 Aligned_cols=299 Identities=14% Similarity=0.172 Sum_probs=159.9
Q ss_pred CCccccccccccCCC---c---eEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCC
Q 010769 137 EDSEDLEDMTINPND---A---VIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGN 210 (502)
Q Consensus 137 ~~~~~v~~~~~~p~~---~---~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~ 210 (502)
+-+.+|.|+.|+|.| + ++++|...+. ..+-.+. ... .+..|.....+.+|-.+-...+ -.+..
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~---~~~l~~~-pd~---~~~~~~~l~~~~iPRSIl~~~~----e~d~~ 596 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDI---SMILTFL-PDL---ILITHEQLSGEIIPRSILLTTF----EGDIH 596 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecce---EEEEEEC-CCc---ceeeeeccCCCccchheeeEEe----eccce
Confidence 345689999999873 2 7888887762 1222222 222 5556666677777765544322 34589
Q ss_pred EEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecCCc
Q 010769 211 FMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASADKQ 290 (502)
Q Consensus 211 ~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~ 290 (502)
+|.++..||.+.-|.++........ .| +.. -.+.++.--.|+...++.++++| |.-
T Consensus 597 yLlvalgdG~l~~fv~d~~tg~lsd-----------------~K----k~~--lGt~P~~Lr~f~sk~~t~vfa~s-drP 652 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDINTGQLSD-----------------RK----KVT--LGTQPISLRTFSSKSRTAVFALS-DRP 652 (1096)
T ss_pred EEEEEcCCceEEEEEEEcccceEcc-----------------cc----ccc--cCCCCcEEEEEeeCCceEEEEeC-CCC
Confidence 9999999999998887654332210 00 001 12345555566666555555544 444
Q ss_pred EEEEECCCCeeeEE-eccCCCCeE-EEEEcC-CCCcEEEEEECCCcEEEEeCCCCCCc-cceEeecCCeEEEEeCCCCCC
Q 010769 291 VKIWDVAAGKCNLT-LEHHTDKVQ-AVAWNH-HSPQILLSGSFDRSVVMKDARISTHS-GFKWAVAADVESLAWDPHAEH 366 (502)
Q Consensus 291 v~vwd~~~~~~~~~-~~~h~~~v~-~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~v~~~p~~~~ 366 (502)
..+|--+ ++.+.+ +.. . .+. .+.|+. ..+..|+++. .+.+++.-+..-+.. ............+++.+.. .
T Consensus 653 ~viY~~n-~kLv~spls~-k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l 727 (1096)
T KOG1897|consen 653 TVIYSSN-GKLVYSPLSL-K-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-L 727 (1096)
T ss_pred EEEEecC-CcEEEeccch-H-HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccc-e
Confidence 5555433 333221 110 1 111 122322 2223454444 456666665432222 1224455667778887733 2
Q ss_pred EEEEEeCC--------------CeEEEEECCCCCCCCCCCCCCccEEEecCC-------CCeeEEEEcCCCCCEEEEEeC
Q 010769 367 SFVVSLED--------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-------KAVCTISYNPLVPNLLATGST 425 (502)
Q Consensus 367 ~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~~l~t~s~ 425 (502)
++.+.+.- ..++++|-.+. ..+..|. -.|.++.|..+...++++|..
T Consensus 728 ~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf------------~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 728 TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF------------EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred EEEEEecccccchhhcCCcceEEEEEEecCCce------------eEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence 34433311 12455554443 2233332 235556688774477777763
Q ss_pred ----------CCcEEEEECCC-CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 426 ----------DKMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 426 ----------dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
.|.|.||.+.. ++...+.... -.+.+.++..- +|+ +|| +-+..|++|+..+.+.++..-+++
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~f-ngk-llA--~In~~vrLye~t~~~eLr~e~~~~ 868 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVEF-NGK-LLA--GINQSVRLYEWTTERELRIECNIS 868 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhhh-CCe-EEE--ecCcEEEEEEccccceehhhhccc
Confidence 47788888777 4433333333 34556665443 455 455 455689999999887766554443
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.0002 Score=62.29 Aligned_cols=107 Identities=12% Similarity=0.091 Sum_probs=70.2
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
-+.-|++|+.+|.|.+|+.......... ...-...|.++--+-+...+.++++.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--------------------------~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--------------------------VCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh--------------------------hhcccccceeccccccccceeEEecc
Confidence 3778999999999999998732211111 01112333333323232458999999
Q ss_pred CCcEEEEECCCCeeeEEeccCC-CCeEEEEEcCCCCcEEEEE--ECCCcEEEEeCCC
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHT-DKVQAVAWNHHSPQILLSG--SFDRSVVMKDARI 341 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~--~~dg~i~vwd~~~ 341 (502)
||.|+.|++.-++.+.....|+ .++..+..+..+ .++..+ +.+..++.|++..
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 9999999999988888887787 555555555544 556666 6677777777653
No 365
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0044 Score=65.38 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=74.5
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+.++++|+..|.+-..|+... +.+ .+.-..-..+|++++|+.+ +.+++.|-.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~------------------------~~~ne~v~~~Vtsvafn~d-g~~l~~G~~ 150 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGP------------------------LHQNERVQGPVTSVAFNQD-GSLLLAGLG 150 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cch------------------------hhcCCccCCcceeeEecCC-CceeccccC
Confidence 3667899999999988887532 111 0111134589999999999 568999999
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEE---EEcCCCCcEEEEEECCCcEEEEeC
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAV---AWNHHSPQILLSGSFDRSVVMKDA 339 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l---~~~~~~~~~l~s~~~dg~i~vwd~ 339 (502)
+|.|.+||+.+++.++.+..|..+++++ .|..++ ..++++...|. +|.+
T Consensus 151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 9999999999999988887666655544 444555 57888887776 5554
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.38 E-value=0.017 Score=55.61 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=108.2
Q ss_pred CcEEEEECCCCeeeEEeccC-CCCeEEE---EEcCC---CCcEEEEEEC---------C-CcEEEEeCCCC----CCcc-
Q 010769 289 KQVKIWDVAAGKCNLTLEHH-TDKVQAV---AWNHH---SPQILLSGSF---------D-RSVVMKDARIS----THSG- 346 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h-~~~v~~l---~~~~~---~~~~l~s~~~---------d-g~i~vwd~~~~----~~~~- 346 (502)
..|++.|..+.+.+.++.-. ...+.++ .+..+ ...+|++|+. . |.|.++++... ....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888888777666422 2334444 33332 1367777753 2 88999999884 1111
Q ss_pred -ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEE
Q 010769 347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 347 -~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~ 423 (502)
......++|.+++-- ++ .++++. .+.|.+|++... ..+.....+ ...++++... + .+++.|
T Consensus 82 i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~---------~~l~~~~~~~~~~~i~sl~~~--~-~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNS---------KTLLKKAFYDSPFYITSLSVF--K-NYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETT---------SSEEEEEEE-BSSSEEEEEEE--T-TEEEEE
T ss_pred EEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCc---------ccchhhheecceEEEEEEecc--c-cEEEEE
Confidence 223567889888765 23 344443 589999999876 212222222 3356666655 3 688888
Q ss_pred eCCCcEEEEECCC--CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 424 STDKMVKLWDLSN--NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 424 s~dg~i~vwd~~~--~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
..-..|.++.+.. .+. ...........++++.|-+++. .++++..+|.|.++....
T Consensus 146 D~~~sv~~~~~~~~~~~l-~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKL-ILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ESSSSEEEEEEETTTE-E-EEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred EcccCEEEEEEEccCCEE-EEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence 8888888875543 322 3333444456689999987776 588899999999998863
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.15 Score=48.35 Aligned_cols=194 Identities=11% Similarity=0.036 Sum_probs=105.0
Q ss_pred cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEec----c-CCCCeEEEEEcCCCCcEEEEEEC-----------
Q 010769 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLE----H-HTDKVQAVAWNHHSPQILLSGSF----------- 330 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~----~-h~~~v~~l~~~~~~~~~l~s~~~----------- 330 (502)
+.+.++.....++ .|+++.. -+.++++.++..+..+. + -....+.+...|+| .+.++...
T Consensus 66 ~~~~~~~~~d~~g-~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~ 141 (307)
T COG3386 66 GGFSSGALIDAGG-RLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERP 141 (307)
T ss_pred CCcccceeecCCC-eEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCC
Confidence 3345555444434 4554433 46777776655433321 1 12345677888888 44333222
Q ss_pred CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEE
Q 010769 331 DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTI 410 (502)
Q Consensus 331 dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 410 (502)
-|.|+.++. .+........+-...+.++|+|++..++++=+..+.|.-|++......... ......+....+..-.+
T Consensus 142 ~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~--~~~~~~~~~~~G~PDG~ 218 (307)
T COG3386 142 TGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG--RRGFVDFDEEPGLPDGM 218 (307)
T ss_pred cceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC--cceEEEccCCCCCCCce
Confidence 122333332 223222222334456789999998865666666788998887631100000 11122233345666777
Q ss_pred EEcCCCCCEEEEEeCCC-cEEEEECCCCCeeEEEEecCCCCCEEEEEEc-CCCCcEEEEEeCC
Q 010769 411 SYNPLVPNLLATGSTDK-MVKLWDLSNNQPSCIASRNPKAGAVFSVAFS-EDSPFVLAIGGSK 471 (502)
Q Consensus 411 ~~sp~~~~~l~t~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~llasg~~d 471 (502)
+...+| .+-+++...| .|.+|+.. +++ +.........+++++|- |+.+.|++++...
T Consensus 219 ~vDadG-~lw~~a~~~g~~v~~~~pd-G~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 219 AVDADG-NLWVAAVWGGGRVVRFNPD-GKL--LGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEeCCC-CEEEecccCCceEEEECCC-CcE--EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 777777 5544444443 89999988 664 33343344667888884 5566567766655
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.33 E-value=0.019 Score=59.61 Aligned_cols=194 Identities=16% Similarity=0.212 Sum_probs=102.8
Q ss_pred eeeEEecCCCCcEEEEEecC------CcEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCc-----EE
Q 010769 269 VLGLAWNKEFRNILASASAD------KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRS-----VV 335 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~D------g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-----i~ 335 (502)
-.+++...+ .+.++|+.+ .++..||..+.+-.. .+....... ....-++.+.++|+.||. +-
T Consensus 325 ~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~---~v~~l~g~iYavGG~dg~~~l~svE 399 (571)
T KOG4441|consen 325 RVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF---GVAVLDGKLYAVGGFDGEKSLNSVE 399 (571)
T ss_pred cccEEEECC--EEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc---eeEEECCEEEEEeccccccccccEE
Confidence 445555543 588888888 357788887765332 222111111 111122378899999874 55
Q ss_pred EEeCCCCCCccc--eEeecCCeEEEEeCCCCCCEEEEEeCCC------eEEEEECCCCCCCCCCCCCCccEEEecCCCCe
Q 010769 336 MKDARISTHSGF--KWAVAADVESLAWDPHAEHSFVVSLEDG------TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV 407 (502)
Q Consensus 336 vwd~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v 407 (502)
.||.++.+-... ..........+.+ ++.+.++|+.++ ++..||..+.. ...+..+..-....
T Consensus 400 ~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~ 469 (571)
T KOG4441|consen 400 CYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGF 469 (571)
T ss_pred EecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccc
Confidence 677665432110 0011112222233 344677776444 47788887653 12222222112222
Q ss_pred eEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-----cEEEE
Q 010769 408 CTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-----KLEIW 477 (502)
Q Consensus 408 ~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-----~i~vw 477 (502)
. ++... ..+.+.||.|+. |..||..+.+...+.........+..+.+ +..+.++||.+| +|..|
T Consensus 470 g-~a~~~--~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~y 543 (571)
T KOG4441|consen 470 G-VAVLN--GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECY 543 (571)
T ss_pred e-EEEEC--CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEecccCccccceeEEc
Confidence 2 22222 377888887763 78899999886555434333333332332 233788899886 47777
Q ss_pred ECCCCc
Q 010769 478 DTLSDA 483 (502)
Q Consensus 478 d~~~~~ 483 (502)
|..+++
T Consensus 544 dp~~d~ 549 (571)
T KOG4441|consen 544 DPETDT 549 (571)
T ss_pred CCCCCc
Confidence 776544
No 369
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00073 Score=41.04 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=34.2
Q ss_pred CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769 299 GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 299 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 338 (502)
++++..+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 45667777889999999999988 8999999999999996
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.32 E-value=0.14 Score=51.27 Aligned_cols=205 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred cceeeEEecCCCCcEEEEEecCCc----EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC----------C
Q 010769 267 DSVLGLAWNKEFRNILASASADKQ----VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD----------R 332 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~Dg~----v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----------g 332 (502)
..+..++++|++..++++-+..|. |+++|+.+++.+...-. ......+.|.+++..++.+.... .
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 345567899997655556566664 99999999977653211 11223499999984444444332 2
Q ss_pred cEEEEeCCCCCCc-cceEee-cC-C-eEEEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCC
Q 010769 333 SVVMKDARISTHS-GFKWAV-AA-D-VESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDK 405 (502)
Q Consensus 333 ~i~vwd~~~~~~~-~~~~~~-~~-~-v~~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~ 405 (502)
.|+.|.+.+.... ...+.. .. . ...+..++++..+++...... .+.+.++...... ......+..+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~-----~~~~~~l~~~~~ 277 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP-----DAKPKLLSPRED 277 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS-----S-SEEEEEESSS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC-----cCCcEEEeCCCC
Confidence 3677777765543 122222 22 2 567888998876555554433 4777788763100 123333443444
Q ss_pred CeeEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCee-EEEEecCCCC--CEEEEEEcCCCCcEEEEEeCCC--cEEEE
Q 010769 406 AVCTISYNPLVPNLLATGS---TDKMVKLWDLSNNQPS-CIASRNPKAG--AVFSVAFSEDSPFVLAIGGSKG--KLEIW 477 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s---~dg~i~vwd~~~~~~~-~~~~~~~~~~--~v~~~~~spd~~~llasg~~dg--~i~vw 477 (502)
.+....-+..+ .+++... ..+.|.-.++...... ....+..+.. .+..+.. .+.+|++....++ .|++|
T Consensus 278 ~~~~~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence 44333322222 4444332 2456777787776531 1113333433 3555554 4455777776666 58889
Q ss_pred ECC
Q 010769 478 DTL 480 (502)
Q Consensus 478 d~~ 480 (502)
++.
T Consensus 355 ~~~ 357 (414)
T PF02897_consen 355 DLD 357 (414)
T ss_dssp ETT
T ss_pred ECC
Confidence 988
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.011 Score=57.92 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=97.2
Q ss_pred EEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCC------cEEEEEECCCcEEEEeCCCCCCccceE-----
Q 010769 281 ILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSP------QILLSGSFDRSVVMKDARISTHSGFKW----- 349 (502)
Q Consensus 281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~----- 349 (502)
+|.++..-..|+-.|++.|+.+.....|.. |+-+.+.|+.. ..-+.|-.+..|.-||.|-...-...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 444555666788889999999999987766 77778877641 123456778899999999655421111
Q ss_pred -eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 350 -AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 350 -~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
.......|.+-.. ..++++|+.+|-|++||- .+ .+....+++...+|..+..+.+| .+|++.+ +..
T Consensus 427 y~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdr-i~--------~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~ty 493 (644)
T KOG2395|consen 427 YSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDR-IG--------RRAKTALPGLGDAIKHVDVTADG-KWILATC-KTY 493 (644)
T ss_pred cccccccceeeecC--CceEEEeecCCcEEeehh-hh--------hhhhhcccccCCceeeEEeeccC-cEEEEec-ccE
Confidence 1233455555544 347999999999999997 33 24556677888999999999998 4444333 456
Q ss_pred EEEEECC
Q 010769 429 VKLWDLS 435 (502)
Q Consensus 429 i~vwd~~ 435 (502)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 6666653
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0018 Score=64.44 Aligned_cols=96 Identities=16% Similarity=0.277 Sum_probs=76.9
Q ss_pred ecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee-EEEEcCCCCCEEEEEeCCCcE
Q 010769 351 VAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC-TISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 351 ~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~~~l~t~s~dg~i 429 (502)
....+..+.|+|.-+ +++.++.+|.|.++.+. . +.++++..|...++ +++|.|+| ++||.|-.||+|
T Consensus 19 l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~---------qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I 86 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMD-LIATRTEKGELLIHRLN-W---------QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTI 86 (665)
T ss_pred cccceEEEEEcCccc-hhheeccCCcEEEEEec-c---------ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeE
Confidence 455688899999755 89999999999999887 3 78899998888888 99999998 999999999999
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcC
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSE 459 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp 459 (502)
++.|+.++....-. .......|.++.|++
T Consensus 87 ~L~Dve~~~~l~~~-~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGRLVSF-LFSVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCceecc-ccccccchheeeccc
Confidence 99999988732221 122345677777764
No 373
>PHA02713 hypothetical protein; Provisional
Probab=97.20 E-value=0.022 Score=59.15 Aligned_cols=186 Identities=5% Similarity=0.034 Sum_probs=93.2
Q ss_pred CcEEEEEecC------CcEEEEECCCCeee--EEeccCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCCc
Q 010769 279 RNILASASAD------KQVKIWDVAAGKCN--LTLEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHS 345 (502)
Q Consensus 279 ~~~l~sgs~D------g~v~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~ 345 (502)
+.+++.|+.+ ..+..||+.+.... ..+.........+.+ ++ .+.+.||.++ .+..||..+..=.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DD-TIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CC-EEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 4577777753 34778888776432 112111112222222 34 7778888764 3778887754211
Q ss_pred c--ceEeecCCeEEEEeCCCCCCEEEEEeCCC-----------------------eEEEEECCCCCCCCCCCCCCccEEE
Q 010769 346 G--FKWAVAADVESLAWDPHAEHSFVVSLEDG-----------------------TIKGFDIRTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 346 ~--~~~~~~~~v~~v~~~p~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~ 400 (502)
. ...........+.. ++.+.++|+.++ .+..||..+.. ...+..+
T Consensus 381 ~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m 450 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNF 450 (557)
T ss_pred ECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-------EeecCCC
Confidence 0 00000111122222 244666666542 46777776542 1111111
Q ss_pred ecCCCCeeEEEEcCCCCCEEEEEeCC------CcEEEEECCC-CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-
Q 010769 401 HAHDKAVCTISYNPLVPNLLATGSTD------KMVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG- 472 (502)
Q Consensus 401 ~~h~~~v~~l~~sp~~~~~l~t~s~d------g~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg- 472 (502)
.........+.+. + .+.+.|+.+ ..+..||..+ .+...+............+.+ ++. +.++||.+|
T Consensus 451 ~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~ 524 (557)
T PHA02713 451 WTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESY 524 (557)
T ss_pred CcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeecce
Confidence 1111111122222 3 666777654 2467899998 665554444433333333333 444 899999888
Q ss_pred -cEEEEECCCCc
Q 010769 473 -KLEIWDTLSDA 483 (502)
Q Consensus 473 -~i~vwd~~~~~ 483 (502)
.+..||+.+++
T Consensus 525 ~~~e~yd~~~~~ 536 (557)
T PHA02713 525 MLQDTFNVYTYE 536 (557)
T ss_pred eehhhcCccccc
Confidence 77888887654
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.06 E-value=0.0015 Score=39.60 Aligned_cols=38 Identities=34% Similarity=0.575 Sum_probs=33.2
Q ss_pred CccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 395 QSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 395 ~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4556677889999999999987 8999999999999996
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.25 Score=45.26 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=108.3
Q ss_pred CcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769 264 SHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 342 (502)
+-...|.+|.|+|+ .+.|++......-.||=...|+.++++.- .-...-.+.|...+ ++.++--.++.+.++.+...
T Consensus 83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence 44455999999999 55666666667777776678898888742 12334567777776 77777777888888877654
Q ss_pred CCccc----eE-----ee-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC-CCCCCccEEEecCCCCeeEEE
Q 010769 343 THSGF----KW-----AV-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD-STSQQSSFTLHAHDKAVCTIS 411 (502)
Q Consensus 343 ~~~~~----~~-----~~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~ 411 (502)
..... .. .+ +.....++|.|... .|++.-+-.-+.||.+........ .....+.....-.-..|+++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32110 11 11 45688999999866 566666777777777664421000 000000000011124578899
Q ss_pred EcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769 412 YNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 412 ~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
|++..+.+|+-+..++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 99877678888888888888887654
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.01 E-value=0.049 Score=42.30 Aligned_cols=103 Identities=24% Similarity=0.266 Sum_probs=68.5
Q ss_pred eEEEEe---CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE
Q 010769 355 VESLAW---DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL 431 (502)
Q Consensus 355 v~~v~~---~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v 431 (502)
|+++++ ..++.+.|++|+.|..|++|+-. ..+..+. -...|++++-... ..++.+..+|+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----------e~~~Ei~-e~~~v~~L~~~~~--~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----------EIVAEIT-ETDKVTSLCSLGG--GRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----------cEEEEEe-cccceEEEEEcCC--CEEEEEecCCEEEE
Confidence 445554 44566889999999999999865 3455555 3456777776653 67999999999999
Q ss_pred EECCCCCeeEEEEecCCCCCEEEEEEc---CCCCcEEEEEeCCCcEEE
Q 010769 432 WDLSNNQPSCIASRNPKAGAVFSVAFS---EDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 432 wd~~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~llasg~~dg~i~v 476 (502)
|+-... +...... ..++++.+. .+|..-|++|-++|.|-+
T Consensus 68 Y~~~~R----lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 68 YDRSQR----LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EeCcce----eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 986433 2333322 235555543 344435888888888753
No 377
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.98 E-value=0.11 Score=53.25 Aligned_cols=193 Identities=16% Similarity=0.225 Sum_probs=109.3
Q ss_pred EEEEEecCCcEEEEECCCCeeeEEeccCCC------CeE--EEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec
Q 010769 281 ILASASADKQVKIWDVAAGKCNLTLEHHTD------KVQ--AVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA 352 (502)
Q Consensus 281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 352 (502)
.++.++.++.|.-.|..+|+.+.++..... .+. .+... ++ ..++.++.++.|+.+|.++++..-. ....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~-~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWK-FGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeee-ecCC
Confidence 677788889999999999988877653322 010 11111 21 4677788899999999998775421 1111
Q ss_pred CCe---EEEEeCC--CCCCEEEEEe---------CCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-------------
Q 010769 353 ADV---ESLAWDP--HAEHSFVVSL---------EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK------------- 405 (502)
Q Consensus 353 ~~v---~~v~~~p--~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~------------- 405 (502)
..+ ..+.-+| .+. ++++++ .+|.|..+|..++ +.++.......
T Consensus 140 ~~~~~~~~i~ssP~v~~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG---------~~~W~~~~~~~~~~~~~~~~~~~~ 209 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKK-LVIIGSSGAEFFACGVRGALRAYDVETG---------KLLWRFYTTEPDPNAFPTWGPDRQ 209 (488)
T ss_pred CCcCcceEecCCCEEECC-EEEEeccccccccCCCCcEEEEEECCCC---------ceeeEeeccCCCcCCCCCCCCCcc
Confidence 110 0011111 012 455554 3678999999887 44454433111
Q ss_pred -------Ce-eEEEEcCCCCCEEEEEeCCC------------------cEEEEECCCCCeeEEEEecCCCC----CEEEE
Q 010769 406 -------AV-CTISYNPLVPNLLATGSTDK------------------MVKLWDLSNNQPSCIASRNPKAG----AVFSV 455 (502)
Q Consensus 406 -------~v-~~l~~sp~~~~~l~t~s~dg------------------~i~vwd~~~~~~~~~~~~~~~~~----~v~~~ 455 (502)
.+ .+.++.+.+ .+++.++.++ .|.-+|+.+++..-......+.. .....
T Consensus 210 ~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p 288 (488)
T cd00216 210 MWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQP 288 (488)
T ss_pred eecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCC
Confidence 01 123444444 5677776554 68889999988432222222211 00000
Q ss_pred EEc----CCC--CcEEEEEeCCCcEEEEECCCCccccc
Q 010769 456 AFS----EDS--PFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 456 ~~s----pd~--~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
.+. -++ ..++++++.+|.+...|..+++.+-+
T Consensus 289 ~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 289 SLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred eEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 111 122 12477788899999999999998754
No 378
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.96 E-value=0.4 Score=46.26 Aligned_cols=197 Identities=12% Similarity=0.078 Sum_probs=100.3
Q ss_pred eEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc--CCCCcEEEEEEC------------------
Q 010769 271 GLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN--HHSPQILLSGSF------------------ 330 (502)
Q Consensus 271 ~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~~l~s~~~------------------ 330 (502)
...++|+.+ .|+-......|+-.|+.+.+....+......+-...|. .++ ..+ +|..
T Consensus 85 g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~-t~~-~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 85 GGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDC-TKL-VGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp T-EE-TTSS-EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTS-SEE-EEEEEEGGG-----SHHHHHHH
T ss_pred ceEEecCCC-eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCc-cEE-EEEEEeehhccCccccHHHHHH
Confidence 456677744 55444455689999999987655555556666556664 333 333 3321
Q ss_pred -----CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeC---CCe-EEEEECCCCCCCCCCCCCCccEEEe
Q 010769 331 -----DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLE---DGT-IKGFDIRTAKSDPDSTSQQSSFTLH 401 (502)
Q Consensus 331 -----dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~---dg~-i~i~d~~~~~~~~~~~~~~~~~~~~ 401 (502)
...|...|+.+++.. ..+.....+..+.|+|..+.+++-|-+ +.. -++|-+++.. ...+.+.
T Consensus 162 ~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------~~~~~v~ 232 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------SNVKKVH 232 (386)
T ss_dssp HHC---EEEEEEETTT--EE-EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EESS
T ss_pred HhhCCCceEEEEECCCCcee-EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--------Ccceeee
Confidence 123555566665543 345566778899999998877776643 221 3677776552 3333333
Q ss_pred cCC--CCeeEEEEcCCCCCEEEEEe----CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC---
Q 010769 402 AHD--KAVCTISYNPLVPNLLATGS----TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG--- 472 (502)
Q Consensus 402 ~h~--~~v~~l~~sp~~~~~l~t~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg--- 472 (502)
.|. ..+..=-|.|+|..+...+. .+..|.-+|+.+.+...+.... ....+.-++||. |++-=|.|.
T Consensus 233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~-L~vGDG~d~p~~ 307 (386)
T PF14583_consen 233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGK-LFVGDGGDAPVD 307 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSS-EEEEEE------
T ss_pred cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCC-EEEecCCCCCcc
Confidence 332 23444568999866555433 2445777888887654433332 355667789998 454433332
Q ss_pred -------------cEEEEECCCCcc
Q 010769 473 -------------KLEIWDTLSDAG 484 (502)
Q Consensus 473 -------------~i~vwd~~~~~~ 484 (502)
.|+++++..+..
T Consensus 308 v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 308 VADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp -------------EEEEEETTTTEE
T ss_pred ccccccceecCCcEEEEeccccCce
Confidence 466777776553
No 379
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.00022 Score=68.61 Aligned_cols=210 Identities=18% Similarity=0.222 Sum_probs=140.8
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 344 (502)
|-.......|-+.+.+ ++.++.+..|..|| +.++....+. .++....++|..+++..++.+-..+.+.+||+.+...
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 3344556678888665 77788888999999 4455444443 4567778999998877888888899999999987654
Q ss_pred ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769 345 SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 424 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s 424 (502)
...-.+....-.-+.|++..+ .++.+...|.+.+++.++. +.......|...++++++.+.+ +.+.++
T Consensus 110 qqLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~d 177 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCD 177 (615)
T ss_pred HHHhccCcchHHHHhhccCCc-cccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecC
Confidence 433333333333378888655 7888889999999999876 3344444488899999999854 444444
Q ss_pred CCCc----------EEEEECCCC----------------------------------------CeeEEEEecCCCCCEEE
Q 010769 425 TDKM----------VKLWDLSNN----------------------------------------QPSCIASRNPKAGAVFS 454 (502)
Q Consensus 425 ~dg~----------i~vwd~~~~----------------------------------------~~~~~~~~~~~~~~v~~ 454 (502)
.|.. +.++..... .+..+ .+....+-+.|
T Consensus 178 cd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~~~gni~c 256 (615)
T KOG2247|consen 178 CDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQEKYGNIHC 256 (615)
T ss_pred cHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-EeeecCCceeE
Confidence 4432 333322210 11112 33334567889
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCccccccccCC
Q 010769 455 VAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRFSKY 492 (502)
Q Consensus 455 ~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~~~~ 492 (502)
..|--||+ |..+-.-|.|.+-.+.+++.....|...
T Consensus 257 yrwylDg~--i~igf~ag~iV~iS~h~aeLgaeffqkl 292 (615)
T KOG2247|consen 257 YRWYLDGY--ILIGFDAGYIVSISAHNAELGAEFFQKL 292 (615)
T ss_pred EEEecccc--ccccccceeEEEEeccchHHHHHHHHHh
Confidence 99999987 4556677788888888888877766543
No 380
>PHA02713 hypothetical protein; Provisional
Probab=96.90 E-value=0.07 Score=55.47 Aligned_cols=147 Identities=11% Similarity=0.109 Sum_probs=75.2
Q ss_pred CcEEEEEecCC-----cEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCC-------------------
Q 010769 279 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDR------------------- 332 (502)
Q Consensus 279 ~~~l~sgs~Dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------------------- 332 (502)
+.+.+.|+.++ ++..||..+.+-.. .+.........+.. ++ .+.+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccc
Confidence 45777777654 48889988764322 22211111222222 34 7777787653
Q ss_pred ----cEEEEeCCCCCCc--cceEeecCCeEEEEeCCCCCCEEEEEeCC------CeEEEEECCC-CCCCCCCCCCCccEE
Q 010769 333 ----SVVMKDARISTHS--GFKWAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRT-AKSDPDSTSQQSSFT 399 (502)
Q Consensus 333 ----~i~vwd~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~ 399 (502)
.+..||..+.+=. ............+.+. +.+.++|+.+ ..+..||..+ .. ...+..
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~---~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~ 498 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK---DDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITT 498 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEEC---CEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccc
Confidence 3667777654311 1010111111122222 3466666643 2467888876 31 222333
Q ss_pred EecCCCCeeEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCeeE
Q 010769 400 LHAHDKAVCTISYNPLVPNLLATGSTDK--MVKLWDLSNNQPSC 441 (502)
Q Consensus 400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg--~i~vwd~~~~~~~~ 441 (502)
+.........+.+. +.+.++|+.++ .+..||..+.+...
T Consensus 499 m~~~r~~~~~~~~~---~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 499 TESRLSALHTILHD---NTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred cCcccccceeEEEC---CEEEEEeeecceeehhhcCcccccccc
Confidence 33222333333332 38888999888 77888888877543
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.89 E-value=0.14 Score=49.87 Aligned_cols=185 Identities=14% Similarity=0.084 Sum_probs=83.9
Q ss_pred CCCCcEEEEEec------CCcEEEEECCCCeeeEEeccC---CCCeEEEEEcCCCCcEEEEEEC----------------
Q 010769 276 KEFRNILASASA------DKQVKIWDVAAGKCNLTLEHH---TDKVQAVAWNHHSPQILLSGSF---------------- 330 (502)
Q Consensus 276 ~~~~~~l~sgs~------Dg~v~vwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~---------------- 330 (502)
|+ +.+++|+-. -|-+.+.|-++.......... ...-..+-|.|.. +.++|+..
T Consensus 139 p~-G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 139 PD-GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHH
T ss_pred CC-ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhh
Confidence 45 447776522 246888887777766665432 2344567788877 77777753
Q ss_pred ----CCcEEEEeCCCCCCccceEeec---CCeEEEEe--CCCCCCEEEEEeCCCeEEEEEC-CCCCCCCCCCCCCccEEE
Q 010769 331 ----DRSVVMKDARISTHSGFKWAVA---ADVESLAW--DPHAEHSFVVSLEDGTIKGFDI-RTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 331 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~v~~--~p~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~ 400 (502)
..++.+||+.+.+..+. .... ..+..|.| .|....-|+.+.-.++|..|-- ..+. .. .+.+..+
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~-idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W~---a~kVi~i 290 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQT-IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--WA---AEKVIDI 290 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEE-EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--EE---EEEEEEE
T ss_pred cccccCeEEEEECCCCcEeeE-EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--ee---eeEEEEC
Confidence 35899999998876653 3222 22445655 4544444555445555555433 2221 00 0111111
Q ss_pred e-----------------cCCCCeeEEEEcCCCCCEEEE-EeCCCcEEEEECCCC-CeeEEEEec--C------------
Q 010769 401 H-----------------AHDKAVCTISYNPLVPNLLAT-GSTDKMVKLWDLSNN-QPSCIASRN--P------------ 447 (502)
Q Consensus 401 ~-----------------~h~~~v~~l~~sp~~~~~l~t-~s~dg~i~vwd~~~~-~~~~~~~~~--~------------ 447 (502)
. +-..-|+.|.+|.+. ++|.. +=..|.|+.||+... .|.++-+.. +
T Consensus 291 p~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g 369 (461)
T PF05694_consen 291 PAKKVEGWILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG 369 (461)
T ss_dssp --EE--SS---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS--
T ss_pred CCcccCcccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc
Confidence 1 113558999999998 55555 456899999999874 333333321 1
Q ss_pred --CCCCEEEEEEcCCCCcEEEEEe
Q 010769 448 --KAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 448 --~~~~v~~~~~spd~~~llasg~ 469 (502)
-.+...-++.|-||+.+.+|.|
T Consensus 370 ~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 370 KRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ----S----EEE-TTSSEEEEE--
T ss_pred cccCCCCCeEEEccCCeEEEEEee
Confidence 1123466888899987666654
No 382
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.015 Score=61.92 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=70.5
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee-eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC-NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 343 (502)
...-+.++.|+|.-....+.+..|+.|+|..+..... +.++. ....++|++|+|.| ..++.|-..|++.-|-..-..
T Consensus 154 k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~lei 231 (1405)
T KOG3630|consen 154 KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEI 231 (1405)
T ss_pred cccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEeecccce
Confidence 3455778999998777788889999999987764332 33333 46778999999999 899999999999888754331
Q ss_pred Ccc---ceEeecCCeEEEEeCCCCC
Q 010769 344 HSG---FKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 344 ~~~---~~~~~~~~v~~v~~~p~~~ 365 (502)
... .-......|.+|+|-....
T Consensus 232 k~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 232 KSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred eecccCCCcCCCcceeEEEEeccee
Confidence 111 0111256799999986443
No 383
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.015 Score=61.88 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCcEEEE--EECCCcEEEEeCCCCCCcc-----------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeE
Q 010769 311 KVQAVAWNHHSPQILLS--GSFDRSVVMKDARISTHSG-----------FKWAVAADVESLAWDPHAEHSFVVSLEDGTI 377 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s--~~~dg~i~vwd~~~~~~~~-----------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i 377 (502)
++..+..++++ .+.++ .+.+-.|.+||++.-.... ..........++.|+|.=+..++++..|+.|
T Consensus 102 pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 44555555665 33332 3334478899988543221 0111233467889999767678888899999
Q ss_pred EEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecC-CCCCEEEEE
Q 010769 378 KGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNP-KAGAVFSVA 456 (502)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~ 456 (502)
++.-+... ...+..+ ......++++|+|.| ..++.|-..|++.-|-..-.....+..... ....|.+++
T Consensus 181 ~V~~~~~~--------~~~v~s~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 181 RVKSTKQL--------AQNVTSF-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhhhhhh--------hhhhccc-CcccceeeEEecccc-ceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 98877654 1222222 245678999999998 899999999999988654332111111111 147899999
Q ss_pred EcCCCCcEEEEE
Q 010769 457 FSEDSPFVLAIG 468 (502)
Q Consensus 457 ~spd~~~llasg 468 (502)
|-....|+++-+
T Consensus 251 Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 251 WLSTQEFLVVYG 262 (1405)
T ss_pred EecceeEEEEec
Confidence 998887654443
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.78 E-value=0.45 Score=44.57 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=90.0
Q ss_pred CcEEEEEecCCcEEEEECCC-CeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccc----------
Q 010769 279 RNILASASADKQVKIWDVAA-GKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGF---------- 347 (502)
Q Consensus 279 ~~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---------- 347 (502)
++.|+.|..+| |.++++.. ........ ...|..+...+.- +.|++-+ |+.++++++..-.....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 45788998888 99999833 33333332 3349999999877 4444443 59999999875443321
Q ss_pred ----eEeecCCeEEEE-eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCC-CccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769 348 ----KWAVAADVESLA-WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQ-QSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 348 ----~~~~~~~v~~v~-~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
.......+...+ -........++......|.+|........ . .....+ .-...+.+++|.+ ..|+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~-----f~~~~ke~-~lp~~~~~i~~~~---~~i~ 152 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNS-----FSKLLKEI-SLPDPPSSIAFLG---NKIC 152 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccc-----ccceeEEE-EcCCCcEEEEEeC---CEEE
Confidence 111223344444 11222234444445558888888764110 1 223333 3457789999994 6677
Q ss_pred EEeCCCcEEEEECCCCCeeEEE
Q 010769 422 TGSTDKMVKLWDLSNNQPSCIA 443 (502)
Q Consensus 422 t~s~dg~i~vwd~~~~~~~~~~ 443 (502)
.|..++ ..+.|+.++.+..+.
T Consensus 153 v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred EEeCCc-eEEEecCCCCceEEe
Confidence 777554 889999977654444
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.78 E-value=0.32 Score=47.42 Aligned_cols=117 Identities=12% Similarity=0.125 Sum_probs=61.9
Q ss_pred ceeeEEecCCCCcEEEEEec--------------------CCcEEEEECCCCeeeEEeccCC--CCeEEEEEc--CCCCc
Q 010769 268 SVLGLAWNKEFRNILASASA--------------------DKQVKIWDVAAGKCNLTLEHHT--DKVQAVAWN--HHSPQ 323 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~--------------------Dg~v~vwd~~~~~~~~~~~~h~--~~v~~l~~~--~~~~~ 323 (502)
--..+-|+|. .++++|... -.++.+||+.+.+.++++..-. ..+..|.|. |....
T Consensus 182 ~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~ 260 (461)
T PF05694_consen 182 FGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY 260 (461)
T ss_dssp ----EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E
T ss_pred CCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc
Confidence 3456667776 567776543 3689999999999999986433 235567765 44434
Q ss_pred EEEEEECCCcEEEEeC-CCCCCcc---------------------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 010769 324 ILLSGSFDRSVVMKDA-RISTHSG---------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 324 ~l~s~~~dg~i~vwd~-~~~~~~~---------------------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d 381 (502)
-|+.+...++|..|-- ..+.-.. .+.....-++.+..|.+...+.+++-..|.|+.||
T Consensus 261 gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 261 GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence 4555555566655543 2211000 00111344788999999887677777899999999
Q ss_pred CCCC
Q 010769 382 IRTA 385 (502)
Q Consensus 382 ~~~~ 385 (502)
+...
T Consensus 341 ISDP 344 (461)
T PF05694_consen 341 ISDP 344 (461)
T ss_dssp -SST
T ss_pred cCCC
Confidence 9876
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.64 E-value=0.15 Score=50.97 Aligned_cols=156 Identities=14% Similarity=0.189 Sum_probs=96.2
Q ss_pred cccceeeEEecCCCCcEEEEEe--cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEeC
Q 010769 265 HTDSVLGLAWNKEFRNILASAS--ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS---PQILLSGSFDRSVVMKDA 339 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs--~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~ 339 (502)
--.+|..++|.-. ...+++.- ..|.+++=| .+.+..| ..|..+.|.|-+ ...|++.-....|.+|-+
T Consensus 18 AiHPvhGlaWTDG-kqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWTDG-KQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEecCC-CEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3467899999744 55666543 334443322 2334333 468999999864 135677778899999998
Q ss_pred CCCCCccceE--e----ecC----CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeE
Q 010769 340 RISTHSGFKW--A----VAA----DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCT 409 (502)
Q Consensus 340 ~~~~~~~~~~--~----~~~----~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 409 (502)
.........+ . ... -...+.|+|... ++++-+....-.+++++.. ...+..-....+.|.|
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d--------~srVkaDi~~~G~IhC 160 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCD--------SSRVKADIKTSGLIHC 160 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeC--------CceEEEeccCCceEEE
Confidence 6322111111 1 111 124568999766 5555554444456777765 2344443456788999
Q ss_pred EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010769 410 ISYNPLVPNLLATGSTDKMVKLWDLSNN 437 (502)
Q Consensus 410 l~~sp~~~~~l~t~s~dg~i~vwd~~~~ 437 (502)
.+|.++|.+++++.+..=.-++||-...
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 9999999777777776666789986543
No 387
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.61 E-value=1.1 Score=46.32 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=21.1
Q ss_pred EEEEEeCCCcEEEEECCCCcccccc
Q 010769 464 VLAIGGSKGKLEIWDTLSDAGISNR 488 (502)
Q Consensus 464 llasg~~dg~i~vwd~~~~~~~~~~ 488 (502)
+++.++.+|.++.+|..+++.+-+.
T Consensus 474 lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred EEEEECCCCeEEEEECCCCCEeEEE
Confidence 5667888999999999999988544
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.011 Score=62.58 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=73.2
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEec
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRN 446 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~ 446 (502)
.+++|++.|.|..+|++.. ..+...-..-.++|++++|+.+| .+++.|-.+|.|.+||+..+++.......
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n--------L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN--------LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc--------cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeec
Confidence 6888999999999998864 13333333346899999999998 99999999999999999998765554443
Q ss_pred CC-CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 447 PK-AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 447 ~~-~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
++ ...|..+.+..++. .+.++...|. +|.+.
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 33 22344455555555 5777777776 66653
No 389
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.48 E-value=0.69 Score=43.91 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=110.8
Q ss_pred EEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEe-
Q 010769 272 LAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWA- 350 (502)
Q Consensus 272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~- 350 (502)
-.|.+....++.+--..+.|.-|+..+++. ..+. +...+.++.....+ ..|+++.. .+.+++............
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 357777555677777788899999876643 2232 23334444443333 34554432 355566544433111111
Q ss_pred ----ecCCeEEEEeCCCCCCEEEEEeCC------------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcC
Q 010769 351 ----VAADVESLAWDPHAEHSFVVSLED------------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNP 414 (502)
Q Consensus 351 ----~~~~v~~v~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 414 (502)
.....+.+...|+|. ++.++.. |.|+.++.. + .....+..+-..-++|+|||
T Consensus 105 ~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g---------~~~~l~~~~~~~~NGla~Sp 172 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPD-G---------GVVRLLDDDLTIPNGLAFSP 172 (307)
T ss_pred cCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCC-C---------CEEEeecCcEEecCceEECC
Confidence 123456677788765 4444333 234333321 1 23333344445568899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC--C---CeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCcccccc
Q 010769 415 LVPNLLATGSTDKMVKLWDLSN--N---QPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG-KLEIWDTLSDAGISNR 488 (502)
Q Consensus 415 ~~~~~l~t~s~dg~i~vwd~~~--~---~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg-~i~vwd~~~~~~~~~~ 488 (502)
++..++++=+..+.|.-|++.. . ............+..-.++...+|.+ .+++...| .|.+|+.. ++.+..+
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-EEecccCCceEEEECCC-CcEEEEE
Confidence 9955555656668888887752 1 11122233334566667888888874 43444444 89999988 7766554
Q ss_pred c
Q 010769 489 F 489 (502)
Q Consensus 489 ~ 489 (502)
.
T Consensus 251 ~ 251 (307)
T COG3386 251 K 251 (307)
T ss_pred E
Confidence 3
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.47 E-value=0.36 Score=50.24 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=75.3
Q ss_pred CcEEEEEecCCc-----EEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC------cEEEEeCCCCCCcc-
Q 010769 279 RNILASASADKQ-----VKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMKDARISTHSG- 346 (502)
Q Consensus 279 ~~~l~sgs~Dg~-----v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~- 346 (502)
+.+.|+|+.||. |-.||..+.+....-. ......+.....-++.+.++|+.++ ++..||..+..-..
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 568888988864 6778877654322111 1112222222222237888888665 45677776543211
Q ss_pred -ceEeecCCeEEEEeCCCCCCEEEEEeCCCe-----EEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEE
Q 010769 347 -FKWAVAADVESLAWDPHAEHSFVVSLEDGT-----IKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLL 420 (502)
Q Consensus 347 -~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 420 (502)
.............+ +..++++|+.++. |..||..+.. ...+..+......+....+ +..+.
T Consensus 460 ~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~-------W~~v~~m~~~rs~~g~~~~---~~~ly 526 (571)
T KOG4441|consen 460 APMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ-------WTMVAPMTSPRSAVGVVVL---GGKLY 526 (571)
T ss_pred CCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc-------eeEcccCccccccccEEEE---CCEEE
Confidence 11111111222222 2457788887763 7778887652 1222222222233333333 24778
Q ss_pred EEEeCCCc-----EEEEECCCCCe
Q 010769 421 ATGSTDKM-----VKLWDLSNNQP 439 (502)
Q Consensus 421 ~t~s~dg~-----i~vwd~~~~~~ 439 (502)
++|+.||. |..||..+.+.
T Consensus 527 ~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 527 AVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EEecccCccccceeEEcCCCCCce
Confidence 88887764 66677666653
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.46 E-value=1.1 Score=44.46 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEec---CCCCcEEEE
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWN---KEFRNILAS 284 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~~~~l~s 284 (502)
+...|++|+..|.++||+...........++. ..-..+|..|..- +......++
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-----------------------~~l~~PILqv~~G~F~s~~~~~~La 92 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-----------------------TQLKDPILQVECGKFVSGSEDLQLA 92 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-----------------------EecCCcEEEEEeccccCCCCcceEE
Confidence 57799999999999999984322111111111 1234567777643 221222333
Q ss_pred EecCCcEEEEECCC--Ce-------eeEEeccCC--CCeEEEEEcCC----CCcEEEEEECCCcEEEEeCCCCCCccceE
Q 010769 285 ASADKQVKIWDVAA--GK-------CNLTLEHHT--DKVQAVAWNHH----SPQILLSGSFDRSVVMKDARISTHSGFKW 349 (502)
Q Consensus 285 gs~Dg~v~vwd~~~--~~-------~~~~~~~h~--~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 349 (502)
.-.-..+.||.+.. |. .+..+..|. .....+++-|- +..++.+-+.||.+.+|+-+...... ..
T Consensus 93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~-~l 171 (418)
T PF14727_consen 93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR-FL 171 (418)
T ss_pred EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE-Ec
Confidence 35556777777621 11 112222222 22333443332 23688889999999999976533211 11
Q ss_pred eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCC
Q 010769 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRT 384 (502)
Q Consensus 350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~ 384 (502)
...--...+++.+... .|++++.+..|..|....
T Consensus 172 p~~llPgPl~Y~~~tD-sfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 172 PDFLLPGPLCYCPRTD-SFVTASSSWTLECYKYQD 205 (418)
T ss_pred CCCCCCcCeEEeecCC-EEEEecCceeEEEecHHH
Confidence 1111223456666544 788888888999887643
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.43 E-value=0.31 Score=50.75 Aligned_cols=191 Identities=11% Similarity=0.174 Sum_probs=98.1
Q ss_pred cceeeEEecCCCCcEEEEEe-----cCC--cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC--------
Q 010769 267 DSVLGLAWNKEFRNILASAS-----ADK--QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-------- 331 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs-----~Dg--~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------- 331 (502)
..+...+++|++....++.. .|. .|.+++.. +.. ..+.. ....+.-.|+|+| ..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG-~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDA-DAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCC-CceEEEecCcceEEEec
Confidence 46788899999665544442 244 45555542 222 22321 2237788999997 444444322
Q ss_pred ----CcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cCCCC
Q 010769 332 ----RSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKA 406 (502)
Q Consensus 332 ----g~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~ 406 (502)
+.+.+.++..+.... ...+.|..+.|+|+|..++++. +|.|++--+....... .. ......+. .-...
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-ee-ecccEEeecccCCc
Confidence 233333443332221 3456799999999998655554 4777763322211000 00 01112222 23334
Q ss_pred eeEEEEcCCCCCEEEEEeCCCcEEEE--ECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcE
Q 010769 407 VCTISYNPLVPNLLATGSTDKMVKLW--DLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKL 474 (502)
Q Consensus 407 v~~l~~sp~~~~~l~t~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i 474 (502)
+.++.|.+++ .+ +++..++...+| ++...... .........++.+++-++. . ++ ....+|.+
T Consensus 499 ~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~-~-iy-v~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS-T-VY-VTDARAVL 562 (591)
T ss_pred cccceEecCC-EE-EEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc-e-EE-EEcCCceE
Confidence 6889999987 44 455554444444 44433211 1122223567888888874 3 34 44566633
No 393
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.40 E-value=0.97 Score=48.16 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=53.5
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCC----------Cee---eEEe--------ccCCCCeEEEEEcCCC--
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAA----------GKC---NLTL--------EHHTDKVQAVAWNHHS-- 321 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~----------~~~---~~~~--------~~h~~~v~~l~~~~~~-- 321 (502)
-.-.|..|.+||+| .+||..|..| |.|-.+.. |+. .+++ ..+...|..+.|||.+
T Consensus 83 ~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 83 PLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 34579999999995 4666666655 44433321 111 1111 1345689999999985
Q ss_pred CcEEEEEECCCcEEEEeCCCCCCcc
Q 010769 322 PQILLSGSFDRSVVMKDARISTHSG 346 (502)
Q Consensus 322 ~~~l~s~~~dg~i~vwd~~~~~~~~ 346 (502)
...|++-..|+++++||+.....+.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCe
Confidence 3788889999999999997655443
No 394
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.29 E-value=0.37 Score=50.18 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=90.1
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE-----CCC--cEEEEeCCCCCCccceEeecCCeEEEEe
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS-----FDR--SVVMKDARISTHSGFKWAVAADVESLAW 360 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-----~dg--~i~vwd~~~~~~~~~~~~~~~~v~~v~~ 360 (502)
+|.+.-.+-..-.++.-..+....+.+.+.+|+|....++.. .+. .|.+++.. .... ........++-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~-~lt~g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAV-QVLEGHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccce-eeecCCCCCCceE
Confidence 666655442222233222233346788999999954444442 233 45555542 2222 1222234788899
Q ss_pred CCCCCCEEEEEeC-----------CCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769 361 DPHAEHSFVVSLE-----------DGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 361 ~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
+|++..+.++... .+.+.+.++..+ .... ...+.|..+.|||+| ..|+... ++.|
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g---------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v 470 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS---------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKV 470 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCc---------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEE
Confidence 9987643333221 123333333322 1111 335679999999999 5444443 4677
Q ss_pred EE---EECCCCCeeE--EEEecC-CCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 430 KL---WDLSNNQPSC--IASRNP-KAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 430 ~v---wd~~~~~~~~--~~~~~~-~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
++ -....+...+ ...+.. -...+.++.|.+++. |+ ++..++...+|.+.
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEe
Confidence 77 4433443211 111222 223468899999998 34 44555555566654
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.27 E-value=0.22 Score=49.99 Aligned_cols=159 Identities=13% Similarity=0.253 Sum_probs=95.5
Q ss_pred CCeEEEEEcCCCCcEEEEEE--CCCcEEEEeCCCCCCccceEeecCCeEEEEeCCC----CCCEEEEEeCCCeEEEEECC
Q 010769 310 DKVQAVAWNHHSPQILLSGS--FDRSVVMKDARISTHSGFKWAVAADVESLAWDPH----AEHSFVVSLEDGTIKGFDIR 383 (502)
Q Consensus 310 ~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~----~~~~l~~~~~dg~i~i~d~~ 383 (502)
-++..++|.. |.+.+++.- .+|.+++=|.+ ..+.-..|..++|.|- .+ .+++.-....|.+|-+.
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~-------viGqFEhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSK-------VIGQFEHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCcc-------EeeccceeeeeeecCcccCCCC-ceEEEeccceEEEEEec
Confidence 4788899964 436666653 34444332221 2344456889999985 33 45555667889999987
Q ss_pred CCCCCCCCCCCCccEEEecC---CC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEc
Q 010769 384 TAKSDPDSTSQQSSFTLHAH---DK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFS 458 (502)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~h---~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~s 458 (502)
...... .+.+.....+ .- --.++.|+|.. ..|+.-.....-.+++++.........+ ...|.|.|.+|.
T Consensus 91 ~s~~e~----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT 164 (671)
T PF15390_consen 91 PSTTER----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWT 164 (671)
T ss_pred cCcccc----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEec
Confidence 432111 1222221111 11 12457799976 6666555444445667765543333334 456889999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 459 EDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 459 pd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
+||+.|+++.|+.=.-+|||-....
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCchhh
Confidence 9999777777776678899975543
No 396
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.27 E-value=0.019 Score=37.17 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 449 AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 449 ~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
...|.+++|+|... +||.|..+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcCc
Confidence 45699999999998 7999999999999999 55543
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.24 Score=45.42 Aligned_cols=205 Identities=11% Similarity=0.107 Sum_probs=112.9
Q ss_pred EecCCCCcEEEEEecCCcEEEEECCCCee--eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccce-E
Q 010769 273 AWNKEFRNILASASADKQVKIWDVAAGKC--NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFK-W 349 (502)
Q Consensus 273 ~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~ 349 (502)
+|-+.+......++.. .-+|...-... .+.+.+-...+.++.|+|+. +.|++......-.|+=...++.+... .
T Consensus 49 a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL 125 (316)
T COG3204 49 AWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPL 125 (316)
T ss_pred EEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecc
Confidence 3433323344444444 44554432211 11234455669999999999 66666666666666655555544321 1
Q ss_pred eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCC-CCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCc
Q 010769 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTS-QQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKM 428 (502)
Q Consensus 350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~ 428 (502)
..-+....+.|...+ .++++--.++.+.++.+........... .-++......+...-+++|.|.. ..|..+-.-.-
T Consensus 126 ~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P 203 (316)
T COG3204 126 TGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNP 203 (316)
T ss_pred cccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCC
Confidence 223456677777643 2455555677888887765422111100 01111111125677899999987 66666666666
Q ss_pred EEEEECCCCC-eeEEEEecCC-------CCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 429 VKLWDLSNNQ-PSCIASRNPK-------AGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 429 i~vwd~~~~~-~~~~~~~~~~-------~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
+.||.+.... ...+.....+ ...|.++.|.+....+|+-+..++.+.-.|....
T Consensus 204 ~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 204 IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 7777665432 1111111111 2347788898876668888888888877776544
No 398
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.25 E-value=2.1 Score=45.78 Aligned_cols=175 Identities=9% Similarity=0.056 Sum_probs=110.5
Q ss_pred cEEEEECCCCeeeEEeccC----CCCeEEEEEcCCCCcEEEEEEC----------CCcEEEEeCCCCCCccce--EeecC
Q 010769 290 QVKIWDVAAGKCNLTLEHH----TDKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFK--WAVAA 353 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~--~~~~~ 353 (502)
.++++|-++-+.++..+.. ...|.++.|..+...++++|.. .|.|.+|.+...+..... ....+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 4777777766554433211 1245566688875577777753 578888887763322212 23345
Q ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010769 354 DVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWD 433 (502)
Q Consensus 354 ~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd 433 (502)
.+.++.-- +. .++ ++-+..|++|+..+. +.++.-..|..++..+...-.+ ..++.|..-+++.+.-
T Consensus 831 av~aL~~f--ng-kll-A~In~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 831 AVYALVEF--NG-KLL-AGINQSVRLYEWTTE---------RELRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQ 896 (1096)
T ss_pred ceeehhhh--CC-eEE-EecCcEEEEEEcccc---------ceehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEE
Confidence 55555432 23 233 345678999999876 4566666788888888888877 8899998888877765
Q ss_pred CCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 434 LSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 434 ~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
.+..+- ........+...++++.+-.+..| +.+...|.+.+-...
T Consensus 897 y~~~eg~f~evArD~~p~Wmtaveil~~d~y--lgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 897 YKGDEGNFEEVARDYNPNWMTAVEILDDDTY--LGAENSGNLFTVRKD 942 (1096)
T ss_pred EeccCCceEEeehhhCccceeeEEEecCceE--EeecccccEEEEEec
Confidence 554431 123344566778888888877764 444566777665543
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.21 E-value=0.16 Score=52.90 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=87.5
Q ss_pred cEEEEEecCC------cEEEEECCCCeeeEE--eccCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCCcc
Q 010769 280 NILASASADK------QVKIWDVAAGKCNLT--LEHHTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTHSG 346 (502)
Q Consensus 280 ~~l~sgs~Dg------~v~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~ 346 (502)
.+++.|+.++ .+..||+.+.+.... +.........+.+ ++ .+++.||.++ .+..||..+.+-..
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 4666666542 577888877654321 1111112222222 34 7788888653 46677776543111
Q ss_pred ce-EeecCCeEEEEeCCCCCCEEEEEeCC------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCE
Q 010769 347 FK-WAVAADVESLAWDPHAEHSFVVSLED------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNL 419 (502)
Q Consensus 347 ~~-~~~~~~v~~v~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 419 (502)
.. ......-.+++.. ++.+++.|+.. ..+..||..+..- ..+..+....... ++... ++ .+
T Consensus 373 ~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-------~~~~~~p~~r~~~-~~~~~-~~-~i 440 (534)
T PHA03098 373 EPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW-------SKGSPLPISHYGG-CAIYH-DG-KI 440 (534)
T ss_pred CCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee-------eecCCCCccccCc-eEEEE-CC-EE
Confidence 00 0011111112221 23466666632 3578888876421 1111111111111 22222 23 66
Q ss_pred EEEEeCC--------CcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010769 420 LATGSTD--------KMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 483 (502)
Q Consensus 420 l~t~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~ 483 (502)
++.|+.. ..+.+||..+.+...+............+.+ ++. +++.||.+ ..+.+||+.++.
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCCCE
Confidence 6666643 2388899988765433222211111122222 454 67778764 468889887653
No 400
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.19 E-value=0.4 Score=47.27 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=38.9
Q ss_pred cceeeEEecCC----------CCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcC
Q 010769 267 DSVLGLAWNKE----------FRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH 319 (502)
Q Consensus 267 ~~V~~l~~~~~----------~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 319 (502)
..|+++.|-|- +...++.|..+|.|++|.. +|..+..-..|..+|..+....
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 45666665432 1468999999999999984 6777666667899999998854
No 401
>PRK10115 protease 2; Provisional
Probab=96.14 E-value=2.3 Score=45.58 Aligned_cols=199 Identities=7% Similarity=0.014 Sum_probs=97.6
Q ss_pred cceeeEEecCCCCcEEEEEecCC----cEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEE
Q 010769 267 DSVLGLAWNKEFRNILASASADK----QVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD-----RSVVMK 337 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~Dg----~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vw 337 (502)
-.+..+.|+|+++.++++...+| .|++.|+.++..+...-... . ..++|.+++..++++...+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 45778899999664555544444 58899998886432221111 1 5699999985555555432 357777
Q ss_pred eCCCCCC--ccceEeecCCeEEEEeCC-CCCCEEEEEe--CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCe-eEEE
Q 010769 338 DARISTH--SGFKWAVAADVESLAWDP-HAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAV-CTIS 411 (502)
Q Consensus 338 d~~~~~~--~~~~~~~~~~v~~v~~~p-~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~ 411 (502)
++.++.. ............-..+.+ ++..+++.+. .++.+.+++..... ..+ ..+..+...+ ..+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~-------~~~-~~~~~~~~~~~~~~~ 276 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD-------AEP-FVFLPRRKDHEYSLD 276 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC-------CCc-eEEEECCCCCEEEEE
Confidence 7777632 221222222233223333 5554443332 33568888854321 121 2222222222 2222
Q ss_pred EcCCCCCEEEEEeC-CC--cEEEEECCC-CCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 412 YNPLVPNLLATGST-DK--MVKLWDLSN-NQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 412 ~sp~~~~~l~t~s~-dg--~i~vwd~~~-~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
+..+ .+++.... .. .|...++.. .+...+... .....|..+.+.. .+++++...+|.-+++-+.
T Consensus 277 -~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 -HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLFT--DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred -eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEc
Confidence 2222 33333222 12 343344442 222122211 1123677888873 3578877778765555443
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.07 E-value=0.41 Score=42.31 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=88.3
Q ss_pred ccccccccccCCCceEEEEEecCCcc-----eeEEEEEecCCCCCCceeeeecccc---CCCcceeeeecCCCCCCCC-C
Q 010769 139 SEDLEDMTINPNDAVIVCARNEDDVS-----HLEVYILEESDGGDPNLYVHHHIII---PAFPLCMAWLDCPLKDREK-G 209 (502)
Q Consensus 139 ~~~v~~~~~~p~~~~l~~~~~~~~~~-----~l~v~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~w~~~~~~~s~~-~ 209 (502)
....++-..+|+|++. +|...+-.. .-.+|.|.. .||-..+ -.++..++| +.+ .
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~---------~h~v~~i~~~v~IsNgl~W-------d~d~K 170 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA---------GHQVELIWNCVGISNGLAW-------DSDAK 170 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEecc---------CCCceeeehhccCCccccc-------cccCc
Confidence 4567888899999994 444333111 112333322 2221111 234455666 444 5
Q ss_pred CEEEEecCCCcEEEeeC--CCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 210 NFMAVGSMEPAIEIWDL--DVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 210 ~~la~g~~dg~I~iwdl--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
.+-.+-+.+-+|.-||. .+++...+..++.- ++. +.. .|. .--.++.... +++.+++-.
T Consensus 171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dl----------rk~---~~~----e~~-~PDGm~ID~e-G~L~Va~~n 231 (310)
T KOG4499|consen 171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDL----------RKS---QPF----ESL-EPDGMTIDTE-GNLYVATFN 231 (310)
T ss_pred EEEEEccCceEEeeeecCCCcccccCcceeEEe----------ccC---CCc----CCC-CCCcceEccC-CcEEEEEec
Confidence 56667777788877884 45444443333210 111 100 111 1112233344 667888888
Q ss_pred CCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEE
Q 010769 288 DKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSG 328 (502)
Q Consensus 288 Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 328 (502)
.++|...|+.+|+.+..++..+..|+|++|--.+-.+|++.
T Consensus 232 g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 89999999999999999988899999999975532344433
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.96 E-value=0.023 Score=36.82 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=29.7
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCee
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKC 301 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~ 301 (502)
....|.+++|+|. ..+||.|+.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999 669999999999999998 4543
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.91 E-value=1.8 Score=41.87 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=45.1
Q ss_pred CccEEEecCCCCeeEEEEcCCC------CCEEEEEeCCCcEEEEECCCCCe-eEEEEe-cCCCCCEEEEEEcCCCCcEEE
Q 010769 395 QSSFTLHAHDKAVCTISYNPLV------PNLLATGSTDKMVKLWDLSNNQP-SCIASR-NPKAGAVFSVAFSEDSPFVLA 466 (502)
Q Consensus 395 ~~~~~~~~h~~~v~~l~~sp~~------~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~-~~~~~~v~~~~~spd~~~lla 466 (502)
.++..+..| ..++.+.|.... ..+|++.-..+.|....+..... .....+ ......+..+++.|||. |++
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv 321 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYV 321 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEE
Confidence 355555555 556777776421 14666665567788887764432 222222 33444899999999998 677
Q ss_pred EEeCCCcEE
Q 010769 467 IGGSKGKLE 475 (502)
Q Consensus 467 sg~~dg~i~ 475 (502)
+...+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 666788764
No 405
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.84 E-value=2.7 Score=43.43 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=38.3
Q ss_pred cEEEEECCCCeeeEEeccCCC---------CeEEEEEcCCCC--cEEEEEECCCcEEEEeCCCCCCc
Q 010769 290 QVKIWDVAAGKCNLTLEHHTD---------KVQAVAWNHHSP--QILLSGSFDRSVVMKDARISTHS 345 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~h~~---------~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~ 345 (502)
+|.-.|+++|+....++.... ...-+....++. ..++.+..+|.+.+.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 677788999998877754221 112223334552 47889999999999999987753
No 406
>PHA03098 kelch-like protein; Provisional
Probab=95.75 E-value=0.45 Score=49.51 Aligned_cols=158 Identities=11% Similarity=0.071 Sum_probs=73.7
Q ss_pred CcEEEEEecC-----CcEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEeCCCCCCc
Q 010769 279 RNILASASAD-----KQVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD------RSVVMKDARISTHS 345 (502)
Q Consensus 279 ~~~l~sgs~D-----g~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~ 345 (502)
+.+++.|+.+ ..+..||..+++-.. .+....... +++. -++ .+++.|+.. ..+..||..+.+-.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 4577777765 357788887664322 121111111 1222 233 677777742 35778887754211
Q ss_pred cc--eEeecCCeEEEEeCCCCCCEEEEEeCC--------CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC
Q 010769 346 GF--KWAVAADVESLAWDPHAEHSFVVSLED--------GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL 415 (502)
Q Consensus 346 ~~--~~~~~~~v~~v~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 415 (502)
.. .........++.. ++.+++.|+.+ ..+.+||..+..- ..+..+.........+.+ +
T Consensus 420 ~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-------~~~~~~~~~r~~~~~~~~--~ 487 (534)
T PHA03098 420 KGSPLPISHYGGCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-------TELSSLNFPRINASLCIF--N 487 (534)
T ss_pred ecCCCCccccCceEEEE---CCEEEEECCccCCCCCcccceEEEecCCCCce-------eeCCCCCcccccceEEEE--C
Confidence 10 0000011112222 23466666543 2378888876521 111111111111122222 3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCeeEEEEecCCCCCE
Q 010769 416 VPNLLATGSTD-----KMVKLWDLSNNQPSCIASRNPKAGAV 452 (502)
Q Consensus 416 ~~~~l~t~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v 452 (502)
+ .+++.|+.+ +.|.+||..+.+...+.......+.|
T Consensus 488 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 488 N-KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred C-EEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 3 677777654 46888998887654444444333433
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.70 E-value=3.1 Score=44.41 Aligned_cols=36 Identities=11% Similarity=0.317 Sum_probs=29.5
Q ss_pred CcccceeeEEecCCC--CcEEEEEecCCcEEEEECCCC
Q 010769 264 SHTDSVLGLAWNKEF--RNILASASADKQVKIWDVAAG 299 (502)
Q Consensus 264 ~h~~~V~~l~~~~~~--~~~l~sgs~Dg~v~vwd~~~~ 299 (502)
.+...|..+.|+|.+ +..|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 456789999999984 457778888999999999754
No 408
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=95.60 E-value=0.0047 Score=59.07 Aligned_cols=18 Identities=6% Similarity=0.291 Sum_probs=12.1
Q ss_pred eeccCCCCccCCcccCCCCHH
Q 010769 6 SWVPKGASKAVPEEAEPPSKE 26 (502)
Q Consensus 6 ~~~~~g~~~~~~~~~~~~~~~ 26 (502)
-||.+- ..+..|..+ ++-
T Consensus 14 dWi~~~--~~~~~KlTi-~Dt 31 (458)
T PF10446_consen 14 DWIRQD--TDYKRKLTI-NDT 31 (458)
T ss_pred hhhhcc--ccccccccH-HHH
Confidence 388874 677778777 543
No 409
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=1.1 Score=40.97 Aligned_cols=142 Identities=10% Similarity=0.051 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCcEEEEEECCCc-EEEEeCCCCCCccceEeecCC--eEEEEeCCCCCCEEEEE-----eCCCeEEEEEC
Q 010769 311 KVQAVAWNHHSPQILLSGSFDRS-VVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVS-----LEDGTIKGFDI 382 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~-----~~dg~i~i~d~ 382 (502)
....+.++|..+.-++.+-.-|+ ..++|....+.+.......+. .-.=+|+|+|. +|++. ..-|.|-+||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEec
Confidence 34457788877666666666665 467888776655433322221 12346899887 45443 23478999999
Q ss_pred CCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeC-------CC-----------cEEEEECCCCCeeEEEE
Q 010769 383 RTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGST-------DK-----------MVKLWDLSNNQPSCIAS 444 (502)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~-------dg-----------~i~vwd~~~~~~~~~~~ 444 (502)
+.. ...+-.+..|.-.-..+.+.++| +.|+.+.. -| ++.+.|..++..+...+
T Consensus 148 r~~--------fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~ 218 (366)
T COG3490 148 REG--------FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT 218 (366)
T ss_pred ccc--------cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence 976 46777888888888899999999 65555432 11 12223333333222222
Q ss_pred ec--CCCCCEEEEEEcCCCC
Q 010769 445 RN--PKAGAVFSVAFSEDSP 462 (502)
Q Consensus 445 ~~--~~~~~v~~~~~spd~~ 462 (502)
+. .+.-.|..+...+||.
T Consensus 219 Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred CchhhhhcceeeeeeCCCCc
Confidence 22 3345678888888887
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=95.47 E-value=0.47 Score=48.47 Aligned_cols=183 Identities=10% Similarity=0.046 Sum_probs=86.5
Q ss_pred CcEEEEEecCC-----cEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEeCCCCCCcc--c
Q 010769 279 RNILASASADK-----QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFD--RSVVMKDARISTHSG--F 347 (502)
Q Consensus 279 ~~~l~sgs~Dg-----~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~--~ 347 (502)
..+++.|+.++ ++..||..+++... .+.........+. -++ .+.+.|+.+ ..+..||..+.+-.. .
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECC-EEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 34667777543 57778887765432 2221111122222 234 777778764 357778765432110 0
Q ss_pred eEeecCCeEEEEeCCCCCCEEEEEeCCC---eEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEe
Q 010769 348 KWAVAADVESLAWDPHAEHSFVVSLEDG---TIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGS 424 (502)
Q Consensus 348 ~~~~~~~v~~v~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s 424 (502)
..........+.. ++.+.++|+.++ .+..||.++..= ..+..+.........+.+. + .+.+.|+
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W-------~~~~~m~~~r~~~~~~~~~--~-~IYv~GG 415 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW-------QFGPSTYYPHYKSCALVFG--R-RLFLVGR 415 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE-------EeCCCCCCccccceEEEEC--C-EEEEECC
Confidence 0000111122222 234666666543 467788765420 1111111111111222222 2 5556653
Q ss_pred CCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCc
Q 010769 425 TDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK-----GKLEIWDTLSDA 483 (502)
Q Consensus 425 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d-----g~i~vwd~~~~~ 483 (502)
.+.+||..+++...+.......... +++. -++. ++++||.+ ..+..||..+++
T Consensus 416 ---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 ---NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ---ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCCe
Confidence 5788999887754443332222222 2222 2444 78888864 357788876653
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.78 Score=45.28 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=90.3
Q ss_pred CcE-EEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCC------CcEEEEEECCCcEEEEeCCCCCCccceEee
Q 010769 279 RNI-LASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHS------PQILLSGSFDRSVVMKDARISTHSGFKWAV 351 (502)
Q Consensus 279 ~~~-l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 351 (502)
+++ +..|..-..+.-.|+..|+.+.....|..- -+.|.|.. +..-++|-.+..|.-.|.|...........
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444 445666677888899999999988877654 56777753 122345666666776777754422211222
Q ss_pred c-----CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC
Q 010769 352 A-----ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD 426 (502)
Q Consensus 352 ~-----~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d 426 (502)
. ....|..-.. ..++++++..|-|++||--.. +....+++....|..+..+.+|..+|||| .
T Consensus 557 KdY~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k 623 (776)
T COG5167 557 KDYKTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTANGKHILATC--K 623 (776)
T ss_pred hhcccccccccccccc--CceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeecCCcEEEEee--c
Confidence 2 2223332222 338999999999999996543 34445666778899999999985555555 3
Q ss_pred CcEEEEECC
Q 010769 427 KMVKLWDLS 435 (502)
Q Consensus 427 g~i~vwd~~ 435 (502)
..+.+-|++
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 457777764
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.20 E-value=5.6 Score=42.92 Aligned_cols=196 Identities=15% Similarity=0.198 Sum_probs=108.5
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEeccCCCC--------eEEEEEcCC---------------CCcEEEEEECCCcEEE
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDK--------VQAVAWNHH---------------SPQILLSGSFDRSVVM 336 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~--------v~~l~~~~~---------------~~~~l~s~~~dg~i~v 336 (502)
..|+.++.++.|.-.|..+|+.+.++...... ...+.+... ....++.++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 36778888899999999999988877532211 122333211 1146788889999999
Q ss_pred EeCCCCCCccceEeecCCeE-------------EEEeCCC-CCCEEEEEeC----------CCeEEEEECCCCCCCCCCC
Q 010769 337 KDARISTHSGFKWAVAADVE-------------SLAWDPH-AEHSFVVSLE----------DGTIKGFDIRTAKSDPDST 392 (502)
Q Consensus 337 wd~~~~~~~~~~~~~~~~v~-------------~v~~~p~-~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~ 392 (502)
.|.++++..-. +...+.+. .+.-.|- ....+++|+. +|.|+-+|.++++
T Consensus 275 LDA~TGk~~W~-fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk------ 347 (764)
T TIGR03074 275 LDADTGKLCED-FGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA------ 347 (764)
T ss_pred EECCCCCEEEE-ecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc------
Confidence 99988876531 12111110 0111110 0125666643 6889999999984
Q ss_pred CCCccEEEecC----------------C-CCe-eEEEEcCCCCCEEEEEe------------------CCCcEEEEECCC
Q 010769 393 SQQSSFTLHAH----------------D-KAV-CTISYNPLVPNLLATGS------------------TDKMVKLWDLSN 436 (502)
Q Consensus 393 ~~~~~~~~~~h----------------~-~~v-~~l~~sp~~~~~l~t~s------------------~dg~i~vwd~~~ 436 (502)
.++.+..- . ..+ ..+++.+.. .+++.+. ..++|.-.|..+
T Consensus 348 ---l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 348 ---LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred ---EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCC
Confidence 33333210 0 111 223444433 2333221 134466677777
Q ss_pred CCeeEEEEecCCC--------CCEEEEEEcC-CCC--cEEEEEeCCCcEEEEECCCCccccc
Q 010769 437 NQPSCIASRNPKA--------GAVFSVAFSE-DSP--FVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 437 ~~~~~~~~~~~~~--------~~v~~~~~sp-d~~--~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
++..-.+....|. .++ -+.+.. +|. -+++.++.+|.+.+.|-.+++.+..
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 7743333332231 111 112222 441 2588899999999999999998754
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.16 E-value=2.6 Score=38.90 Aligned_cols=161 Identities=11% Similarity=0.046 Sum_probs=89.1
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe-CCCCCCcc
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD-ARISTHSG 346 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~ 346 (502)
.+.+.++++++..+.+....++.-.||-...+.....+. ....+..-.|.+++ .+.+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCccee
Confidence 688999999965444444233333444333333333321 22377788999997 6666666666666663 33333222
Q ss_pred ceE--eec-CCeEEEEeCCCCCCEEEEEe--CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769 347 FKW--AVA-ADVESLAWDPHAEHSFVVSL--EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 347 ~~~--~~~-~~v~~v~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
... ... ..|..+.++|+|..+.++.. ..+.|.+--+.............+..........+..+.|.+++ .+++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence 111 111 28999999999987666652 35677776654332110000012222223345688999999987 5555
Q ss_pred EEeC-CCcEEE
Q 010769 422 TGST-DKMVKL 431 (502)
Q Consensus 422 t~s~-dg~i~v 431 (502)
.+.. ++.+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 5444 443433
No 414
>PRK10115 protease 2; Provisional
Probab=95.09 E-value=5.9 Score=42.51 Aligned_cols=249 Identities=12% Similarity=0.098 Sum_probs=118.4
Q ss_pred ccccccccCCCceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCC--
Q 010769 141 DLEDMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSME-- 218 (502)
Q Consensus 141 ~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~d-- 218 (502)
.+..+.++|++++|+.+...+..-...|++.+...+ ... ...++.....+.| +++++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg---~~l---~~~i~~~~~~~~w-------~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG---NWY---PELLDNVEPSFVW-------ANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC---CCC---CccccCcceEEEE-------eeCCCEEEEEEecCC
Confidence 467789999999999987665555667777776543 110 0111222234666 6777777666543
Q ss_pred ----CcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCccccee-eEEecCCCCcEEEEEec--CCcE
Q 010769 219 ----PAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVL-GLAWNKEFRNILASASA--DKQV 291 (502)
Q Consensus 219 ----g~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~~l~sgs~--Dg~v 291 (502)
..|..+++.+...... . .+........ .+..+.++..+++.++. ++.+
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~-----------------------l--v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~ 249 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDE-----------------------L--VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEV 249 (686)
T ss_pred CCCCCEEEEEECCCChhHCe-----------------------E--EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccE
Confidence 2455566654311110 0 1111111122 22333354434433322 3568
Q ss_pred EEEECC--CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEeCCCCCCccceEee--cCCeEEEEeCCCC
Q 010769 292 KIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFD---RSVVMKDARISTHSGFKWAV--AADVESLAWDPHA 364 (502)
Q Consensus 292 ~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~--~~~v~~v~~~p~~ 364 (502)
.+|+.. .+.....+..-......+. +..+ .+++....+ ..|...++...........+ ...+..+.+..
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-- 325 (686)
T PRK10115 250 LLLDAELADAEPFVFLPRRKDHEYSLD-HYQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-- 325 (686)
T ss_pred EEEECcCCCCCceEEEECCCCCEEEEE-eCCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--
Confidence 888843 3332222221122222222 3333 444433322 23444444422222223333 23577777773
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cCCCCeeEEEEc--CCCCCEEEEEeC---CCcEEEEECCCCC
Q 010769 365 EHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGST---DKMVKLWDLSNNQ 438 (502)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~---dg~i~vwd~~~~~ 438 (502)
..++++...+|.-+++-+... ...+..+. .....+..+.++ +++..++++.+. -+.+..+|+.+++
T Consensus 326 ~~l~~~~~~~g~~~l~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 DWLVVEERQRGLTSLRQINRK--------TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEeCCEEEEEEEcCC--------CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 457777777887666554422 11222222 222223333344 333345555443 4668888888765
Q ss_pred e
Q 010769 439 P 439 (502)
Q Consensus 439 ~ 439 (502)
.
T Consensus 398 ~ 398 (686)
T PRK10115 398 R 398 (686)
T ss_pred E
Confidence 3
No 415
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=1.5 Score=45.48 Aligned_cols=176 Identities=13% Similarity=0.202 Sum_probs=86.2
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEE--e--ccCCCCeEEEEEcCCCCcEEEEEECCCcEEE-EeCCCC
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLT--L--EHHTDKVQAVAWNHHSPQILLSGSFDRSVVM-KDARIS 342 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v-wd~~~~ 342 (502)
.+..+.|+.+ ..|++...+|++.||++-.. .+.. . ......|..+.+...| +++-..+|.+.+ .+....
T Consensus 85 ~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~G---Vavlt~~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDD--EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNG---VAVLTVSGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCC--ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCc---eEEEecCCcEEEEcCCCcc
Confidence 7889999988 36888899999999997532 2222 1 1223345555555566 333334455444 333322
Q ss_pred CCccceEeecCCeEEEEeC---CCC-CCEEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCC
Q 010769 343 THSGFKWAVAADVESLAWD---PHA-EHSFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVP 417 (502)
Q Consensus 343 ~~~~~~~~~~~~v~~v~~~---p~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 417 (502)
..............+-+|. |+. ...++--. ..| ..++-.... ......+....+.+..+..||+.
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~--------~~q~~~~~~~~~~~~ki~VS~n~- 228 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES--------RVQLHALSWPNSSVVKISVSPNR- 228 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc--------cccccccCCCCceEEEEEEcCCc-
Confidence 2111000011111112232 211 11111110 111 111212211 11222222234567888999987
Q ss_pred CEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCC
Q 010769 418 NLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSED 460 (502)
Q Consensus 418 ~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd 460 (502)
++|+--...|.|.+-++...+..+-+....|.- --.++|+.+
T Consensus 229 ~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgn 270 (829)
T KOG2280|consen 229 RFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGN 270 (829)
T ss_pred ceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecC
Confidence 899999999999998887766433333333322 224555444
No 416
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=3 Score=38.28 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=107.0
Q ss_pred eeeEEecCCCCcEEEEEecCCc-EEEEECCCCeeeEEeccCCCC--eEEEEEcCCCCcEEEEEEC-----CCcEEEEeCC
Q 010769 269 VLGLAWNKEFRNILASASADKQ-VKIWDVAAGKCNLTLEHHTDK--VQAVAWNHHSPQILLSGSF-----DRSVVMKDAR 340 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~-v~vwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~ 340 (502)
...+.|+|..+.-++.+-.-|+ ..++|.+..+...++...++. --.-.|||+| .+|.+.-. -|.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEecc
Confidence 3456777776656666666665 567888877665554321111 1123589999 66666543 3789999998
Q ss_pred CCC-CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEE--------------------ECCCCCCCCCCCCCCccEE
Q 010769 341 IST-HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGF--------------------DIRTAKSDPDSTSQQSSFT 399 (502)
Q Consensus 341 ~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~--------------------d~~~~~~~~~~~~~~~~~~ 399 (502)
..- .+.....+.-....+.|.++|.. +++. +|-|... |..++.. ....+
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~l-------iekh~ 218 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL-------IEKHT 218 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcE-EEEe--CCceecccccCccccchhhcCccEEEEeccccch-------hhhcc
Confidence 432 22223345556678889998874 4433 2334333 2222210 00011
Q ss_pred Ee--cCCCCeeEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCeeEEEEec-----CCCCCEEEEEEcCCCCcEEEE
Q 010769 400 LH--AHDKAVCTISYNPLVPNLLATGSTDKM-----VKLWDLSNNQPSCIASRN-----PKAGAVFSVAFSEDSPFVLAI 467 (502)
Q Consensus 400 ~~--~h~~~v~~l~~sp~~~~~l~t~s~dg~-----i~vwd~~~~~~~~~~~~~-----~~~~~v~~~~~spd~~~llas 467 (502)
+. .+.-.|..++..++| ..++.+-..|. -.|=-...+++....... ....-|-+++.+.+...+.+|
T Consensus 219 Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lT 297 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALT 297 (366)
T ss_pred CchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEe
Confidence 11 233456666666665 44333322221 000001111111111100 011246677887766655555
Q ss_pred EeCCCcEEEEECCCCccccc
Q 010769 468 GGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 468 g~~dg~i~vwd~~~~~~~~~ 487 (502)
+=..+...+||..++..+..
T Consensus 298 SP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 298 SPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cCCCCeEEEEEcCCCcEEec
Confidence 55556788999999987654
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.85 E-value=0.048 Score=56.85 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=97.8
Q ss_pred ccccccccccCCCc-eEEEEEecCCcceeEEEEEecCCCC-CCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEec
Q 010769 139 SEDLEDMTINPNDA-VIVCARNEDDVSHLEVYILEESDGG-DPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGS 216 (502)
Q Consensus 139 ~~~v~~~~~~p~~~-~l~~~~~~~~~~~l~v~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~ 216 (502)
.+.|-+++|-.... .++ .+++.+-||..+.-.+. .+.|.+|-..+....|--+.|.++ -++.-++..+-
T Consensus 132 ~G~v~dl~fah~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~----~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPI----AVNKVYICYGL 202 (1283)
T ss_pred CCCcccccccccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccc----ccccceeeecc
Confidence 34566666643321 111 23345678877764442 346667777777788877888776 34568899999
Q ss_pred CCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEe-----------cCCCCcEEEEE
Q 010769 217 MEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAW-----------NKEFRNILASA 285 (502)
Q Consensus 217 ~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----------~~~~~~~l~sg 285 (502)
.+|.|++.+.+.. ....+.+|...+..++| +|+ +..|+.+
T Consensus 203 ~~~~i~lL~~~ra----------------------------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv~a~a 253 (1283)
T KOG1916|consen 203 KGGEIRLLNINRA----------------------------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTVFAWA 253 (1283)
T ss_pred CCCceeEeeechH----------------------------HHHHHHhcCCCcccHHHHhhchhhheeeCCC-CcEEEEe
Confidence 9999999887631 11223346666655554 666 5577777
Q ss_pred ecCCcEEEEECC-----CCeeeEEeccCC-CCeEEEEEcCCC------C--cEEEEE-ECCCcEEEEeCCCCCCc
Q 010769 286 SADKQVKIWDVA-----AGKCNLTLEHHT-DKVQAVAWNHHS------P--QILLSG-SFDRSVVMKDARISTHS 345 (502)
Q Consensus 286 s~Dg~v~vwd~~-----~~~~~~~~~~h~-~~v~~l~~~~~~------~--~~l~s~-~~dg~i~vwd~~~~~~~ 345 (502)
+.||.++.|.+. ..+|++..+.|. .+-.|.-++.+. + .+++++ ..+..+++|.....++.
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 888877777653 224455556666 333333243221 0 123333 33556777776554443
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.76 E-value=3.4 Score=38.15 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEE-CCCCCCCC
Q 010769 311 KVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFD-IRTAKSDP 389 (502)
Q Consensus 311 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~ 389 (502)
.+.+.++++++..+.+....++.-.+|-.+......... ....+..-.|++++. +.++...+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~--- 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT--- 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCc---
Confidence 688999999994444444233334444444333322111 334778889999854 555555566666653 22221
Q ss_pred CCCCCCccEEEecC--CCCeeEEEEcCCCCCEEEEEe--CCCcEEEEECCC---CCeeE----EEEecCCCCCEEEEEEc
Q 010769 390 DSTSQQSSFTLHAH--DKAVCTISYNPLVPNLLATGS--TDKMVKLWDLSN---NQPSC----IASRNPKAGAVFSVAFS 458 (502)
Q Consensus 390 ~~~~~~~~~~~~~h--~~~v~~l~~sp~~~~~l~t~s--~dg~i~vwd~~~---~~~~~----~~~~~~~~~~v~~~~~s 458 (502)
......... ...|+.+.+||+|.++.+... .++.|.+--+.. +.+.. ..........+..+.|.
T Consensus 100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 111112211 128999999999955444442 346666654432 21111 11122334678999999
Q ss_pred CCCCcEEEEEeCCCcEEE
Q 010769 459 EDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 459 pd~~~llasg~~dg~i~v 476 (502)
+++..++++...++.+..
T Consensus 175 ~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCEEEEEeCCCCCceeE
Confidence 999854444444443444
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.71 E-value=3.4 Score=37.90 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=105.9
Q ss_pred cceeeEEecCCCCcEEEEEecCC--cEEEEECCCCeeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769 267 DSVLGLAWNKEFRNILASASADK--QVKIWDVAAGKCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~Dg--~v~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 343 (502)
.-..+|.|..+ +.++-|.+.-| .|+.+|+.+++......-. .----.++...+ .+..-.-.++...+||..+.+
T Consensus 45 aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccce
Confidence 34567888655 45777777766 7999999999877655321 122233333322 455556678899999998766
Q ss_pred CccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CC---CCeeEEEEcCCCCC
Q 010769 344 HSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HD---KAVCTISYNPLVPN 418 (502)
Q Consensus 344 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~---~~v~~l~~sp~~~~ 418 (502)
... .+...+.-..++.. +. .++.+..+..|+++|..+. .....+.. .. ..++-+.|.. | .
T Consensus 122 ~~~-~~~y~~EGWGLt~d--g~-~Li~SDGS~~L~~~dP~~f---------~~~~~i~V~~~g~pv~~LNELE~i~-G-~ 186 (264)
T PF05096_consen 122 KIG-TFPYPGEGWGLTSD--GK-RLIMSDGSSRLYFLDPETF---------KEVRTIQVTDNGRPVSNLNELEYIN-G-K 186 (264)
T ss_dssp EEE-EEE-SSS--EEEEC--SS-CEEEE-SSSEEEEE-TTT----------SEEEEEE-EETTEE---EEEEEEET-T-E
T ss_pred EEE-EEecCCcceEEEcC--CC-EEEEECCccceEEECCccc---------ceEEEEEEEECCEECCCcEeEEEEc-C-E
Confidence 554 44555666666633 44 5777777888999998765 33333332 22 2345566652 3 4
Q ss_pred EEEEEeCCCcEEEEECCCCCeeEEEEec-------------CCCCCEEEEEEcCCCCcEEEEE
Q 010769 419 LLATGSTDKMVKLWDLSNNQPSCIASRN-------------PKAGAVFSVAFSEDSPFVLAIG 468 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~~~~~~~~~~-------------~~~~~v~~~~~spd~~~llasg 468 (502)
+.|=.=....|...|..+++......+. +...-.+.|++.|....+++||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 4444445566777788887743332221 1134688999999888667765
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.67 E-value=0.003 Score=65.30 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=83.2
Q ss_pred eeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEE-----------EcCCCCcEEEEEECCCcEEEE
Q 010769 269 VLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVA-----------WNHHSPQILLSGSFDRSVVMK 337 (502)
Q Consensus 269 V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~-----------~~~~~~~~l~s~~~dg~i~vw 337 (502)
|..+-|-++ .-++..+-.+++|++....+... ..|.+|+..++.++ .+|+| ..|++++.||.+++|
T Consensus 186 V~wcp~~~~-~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 186 VSWCPIAVN-KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFY 262 (1283)
T ss_pred eeecccccc-cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCcccee
Confidence 333333444 45777777888999877664432 33455776665544 47888 899999999999988
Q ss_pred eCCCCCCcc----ceEe-ec-CCeEEEEeCCC-------CCC-EEEEEe-CCCeEEEEECCCCCCCCCCCCCCccEEEec
Q 010769 338 DARISTHSG----FKWA-VA-ADVESLAWDPH-------AEH-SFVVSL-EDGTIKGFDIRTAKSDPDSTSQQSSFTLHA 402 (502)
Q Consensus 338 d~~~~~~~~----~~~~-~~-~~v~~v~~~p~-------~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 402 (502)
.+.-..... ..|. |. .+-.|.-++.+ +.. ++++++ .+..+++|......+.... ....+.....
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~-~~d~v~iV~p 341 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK-LIDGVQIVGP 341 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh-cccceEeecC
Confidence 765332211 1222 22 12222222221 111 233333 3456888877655221000 0011122223
Q ss_pred CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010769 403 HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 403 h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~ 436 (502)
|.+.|+-+.....--..+++-+.++.|++|--+.
T Consensus 342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred CCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 4444443322211112345566788899986544
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.49 E-value=0.17 Score=31.78 Aligned_cols=34 Identities=35% Similarity=0.413 Sum_probs=27.5
Q ss_pred CCEEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCc
Q 010769 450 GAVFSVAFSEDSP--FVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 450 ~~v~~~~~spd~~--~llasg~~dg~i~vwd~~~~~ 483 (502)
|.|.++.|+|... -+|+.+-..|.|.|+|++++-
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 4689999997543 478888888999999998643
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.36 E-value=1.2 Score=44.12 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=89.2
Q ss_pred EEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC------CEEEEEeCCCeEEEEECCCCCCCCCCCCCCcc
Q 010769 324 ILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE------HSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSS 397 (502)
Q Consensus 324 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 397 (502)
++..|+....++--|+..++.+. .|.....+ -|.|.|... ..-++|-++..|.-.|.|... ..+
T Consensus 482 i~~dg~~~~kLykmDIErGkvve-eW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--------NKi 551 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVE-EWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--------NKI 551 (776)
T ss_pred EEecCCCcccceeeecccceeee-EeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccC--------Cce
Confidence 34445555667777777766554 66666666 677877521 234566677777777777542 111
Q ss_pred EEEe----cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCc
Q 010769 398 FTLH----AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGK 473 (502)
Q Consensus 398 ~~~~----~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~ 473 (502)
.... ......+|..-.. ..++|++|..|-|++||--..+ ....+++-...|..+..+.+|.++||+| ...
T Consensus 552 ~v~esKdY~tKn~Fss~~tTe--sGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTC--k~y 625 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTE--SGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATC--KNY 625 (776)
T ss_pred eeeeehhcccccccccccccc--CceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEee--cce
Confidence 1111 1112223333233 3699999999999999965543 2334555667899999999999988876 347
Q ss_pred EEEEECCC
Q 010769 474 LEIWDTLS 481 (502)
Q Consensus 474 i~vwd~~~ 481 (502)
|.+-|+.-
T Consensus 626 llL~d~~i 633 (776)
T COG5167 626 LLLTDVPI 633 (776)
T ss_pred EEEEeccc
Confidence 88888753
No 423
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.27 E-value=5.4 Score=43.45 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=78.8
Q ss_pred eecCCeEEEEeC---CC--CCCEEEEEeCCCeEEEEECCCC------CCCCCCCCCCccEEEecC---CCCeeEEEEcCC
Q 010769 350 AVAADVESLAWD---PH--AEHSFVVSLEDGTIKGFDIRTA------KSDPDSTSQQSSFTLHAH---DKAVCTISYNPL 415 (502)
Q Consensus 350 ~~~~~v~~v~~~---p~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~h---~~~v~~l~~sp~ 415 (502)
....+|..|+|. .. ....++..-....+.|+...-. ..........++..+..+ ..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356788888887 21 1112444444556777762211 111111112445555432 357788999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC--e-eEEEEecCCCCC----------EEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 010769 416 VPNLLATGSTDKMVKLWDLSNNQ--P-SCIASRNPKAGA----------VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSD 482 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~~~--~-~~~~~~~~~~~~----------v~~~~~spd~~~llasg~~dg~i~vwd~~~~ 482 (502)
....||+....|...||++.... . ........+.|. -..+.|.++...+|+ + ....+.++|+.+.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~-~r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-C-NRSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-E-cCCceEEEECCCC
Confidence 77899999999999999992111 0 011111111122 347889888775554 3 4557999999987
Q ss_pred cccc
Q 010769 483 AGIS 486 (502)
Q Consensus 483 ~~~~ 486 (502)
....
T Consensus 235 ~~~~ 238 (765)
T PF10214_consen 235 WQTE 238 (765)
T ss_pred Cccc
Confidence 7643
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.11 E-value=6.8 Score=38.91 Aligned_cols=294 Identities=9% Similarity=0.101 Sum_probs=142.9
Q ss_pred CceEEEEEecCCcceeEEEEEecCCCCCCceeeeeccccCCCcceeeeecCCCCCCCCCCEEEEecCCCcEEEeeCCCCC
Q 010769 151 DAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPLKDREKGNFMAVGSMEPAIEIWDLDVID 230 (502)
Q Consensus 151 ~~~l~~~~~~~~~~~l~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~s~~~~~la~g~~dg~I~iwdl~~~~ 230 (502)
...|++|+..| .|+||.-.........+....+ +....++++.-.|-. ......||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G---~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s--~~~~~~LaV-LhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 37 SDKIIVGSYSG---ILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVS--GSEDLQLAV-LHPRKLSVYSVSLVD 108 (418)
T ss_pred ccEEEEecccc---EEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccC--CCCcceEEE-ecCCEEEEEEEEecC
Confidence 35888898887 4455544322211123333332 344556776643311 224456666 445788899884322
Q ss_pred CCCceeeeCCcchhhhhhccccCCccccccccCCcc--cceeeEEecC----CCCcEEEEEecCCcEEEEECCCCeeeEE
Q 010769 231 EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHT--DSVLGLAWNK----EFRNILASASADKQVKIWDVAAGKCNLT 304 (502)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~~~----~~~~~l~sgs~Dg~v~vwd~~~~~~~~~ 304 (502)
.... ......+ .....|. .....+.+-| .++.+|+.-|.||++.+++-+.-...+.
T Consensus 109 g~~~-----------------~g~~~~L-~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~ 170 (418)
T PF14727_consen 109 GTVE-----------------HGNQYQL-ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF 170 (418)
T ss_pred CCcc-----------------cCcEEEE-EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE
Confidence 1100 0000000 0111121 2222232222 2256889999999999999655433333
Q ss_pred eccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC--------------------CCCccceE--eecCCeE---EEE
Q 010769 305 LEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI--------------------STHSGFKW--AVAADVE---SLA 359 (502)
Q Consensus 305 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~--------------------~~~~~~~~--~~~~~v~---~v~ 359 (502)
+.. .--.-.+.|.+.. ..|++++.+..+.-|.... ++.....| .....+. .+.
T Consensus 171 lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~ 248 (418)
T PF14727_consen 171 LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVR 248 (418)
T ss_pred cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEE
Confidence 332 2233456677776 6788888888888876421 11111222 2233333 333
Q ss_pred eCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCee--EE--EEcCCCCCEEEEEeCCCcEEEEECC
Q 010769 360 WDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVC--TI--SYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 360 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l--~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
++.....+++.| ...+.+.+-... .+...++........ .+ ...|.....++.++.++++.||.=.
T Consensus 249 ~~~~~~~IvvLg--er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~ 318 (418)
T PF14727_consen 249 FSSSESDIVVLG--ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT 318 (418)
T ss_pred cCCCCceEEEEe--cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC
Confidence 333222223322 334444443211 011122211111111 11 1122222358888999999998533
Q ss_pred CCCeeEEEEecCCCCCEEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 436 NNQPSCIASRNPKAGAVFSVAF--SEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 436 ~~~~~~~~~~~~~~~~v~~~~~--spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+ +++.......+| ++.. -++-+.+|++-+.+|.+.+-=+.|...+..
T Consensus 319 ~----L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 319 T----LVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred e----EEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence 2 334433333343 2322 223334788899999999988888765443
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.83 E-value=2.4 Score=44.04 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc-ceEeecCCeEEEEeC--CCCCCEEEEEeCCCeEEEEECCCCC
Q 010769 310 DKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG-FKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAK 386 (502)
Q Consensus 310 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~i~d~~~~~ 386 (502)
..++-+.-+.-+ ...++-+....+.|||.+...... ..+.....|..+.|. |++. .+++.+-...|.+|--....
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchh
Confidence 344445555544 455555556689999998776322 122347789999995 5555 45555567777777543221
Q ss_pred CCCCCCCCCccEEE--ecCC-CCeeEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010769 387 SDPDSTSQQSSFTL--HAHD-KAVCTISYNPLVPNLLATGSTDKMVKLWDLS 435 (502)
Q Consensus 387 ~~~~~~~~~~~~~~--~~h~-~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~ 435 (502)
.....+...++..+ ..|+ .+|....|.++| . |++|+ .+.+.|++-.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~-LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-T-LVVGS-GNQLFVFDKW 156 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCC-e-EEEEe-CCEEEEECCC
Confidence 11111112344433 3444 689999999987 4 44443 3468888643
No 426
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.76 E-value=0.54 Score=45.65 Aligned_cols=169 Identities=13% Similarity=0.061 Sum_probs=95.5
Q ss_pred eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEee--cC----CeE-EEEeCCCCCCEEEEEeCC
Q 010769 302 NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAV--AA----DVE-SLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 302 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~----~v~-~v~~~p~~~~~l~~~~~d 374 (502)
+..+..-...|..+-..|++ +.+..-+. ..+.++++.+.......... .+ .|+ ++..- .|...++++..|
T Consensus 213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~d 289 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHED 289 (733)
T ss_pred hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCC
Confidence 33344455678888899999 66655544 67888888765433221111 11 121 11111 244568888889
Q ss_pred CeEEEE-ECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769 375 GTIKGF-DIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453 (502)
Q Consensus 375 g~i~i~-d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 453 (502)
|.|.-| |++...... ...++.+.-...++.-+.--. ..+-+++-+..|++.++.....++...... ...+.
T Consensus 290 G~vsQWFdvr~~~~p~----l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~ 361 (733)
T COG4590 290 GLVSQWFDVRRDGQPH----LNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQ 361 (733)
T ss_pred CceeeeeeeecCCCCc----ceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhh---hcCcc
Confidence 888766 666552100 111222222223333333222 236678888899998887666654322222 23466
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCc
Q 010769 454 SVAFSEDSPFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 454 ~~~~spd~~~llasg~~dg~i~vwd~~~~~ 483 (502)
-+++||.+.+++. -..|.++++.+.+..
T Consensus 362 ~~~~Sp~~~~Ll~--e~~gki~~~~l~Nr~ 389 (733)
T COG4590 362 LVAMSPNQAYLLS--EDQGKIRLAQLENRN 389 (733)
T ss_pred eeeeCcccchhee--ecCCceEEEEecCCC
Confidence 7899999997443 456789999987644
No 427
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.75 E-value=4.8 Score=35.90 Aligned_cols=149 Identities=12% Similarity=0.166 Sum_probs=86.7
Q ss_pred CCeEEEEEcCCCCcEEEEEEC----------CCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEE
Q 010769 310 DKVQAVAWNHHSPQILLSGSF----------DRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKG 379 (502)
Q Consensus 310 ~~v~~l~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i 379 (502)
...+.-..+|+| ++ ..|.. .|.++.|-.. ..+...+..-.--+.++|+.+...+.++-+.+-.|.-
T Consensus 109 nR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCC-ce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 345556678888 55 33332 2334444332 2222334444455678999887767777778888877
Q ss_pred EE--CCCCCCCCCCCCCCccEEEecC----CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEE
Q 010769 380 FD--IRTAKSDPDSTSQQSSFTLHAH----DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVF 453 (502)
Q Consensus 380 ~d--~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 453 (502)
|| ..++.... .+.++.+... .-.--.+++...| ++.+++-..++|..+|..+++. +.++......|+
T Consensus 185 ~dyd~~tG~~sn----r~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~--L~eiklPt~qit 257 (310)
T KOG4499|consen 185 YDYDCPTGDLSN----RKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKI--LLEIKLPTPQIT 257 (310)
T ss_pred eecCCCcccccC----cceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcE--EEEEEcCCCceE
Confidence 77 55543211 1333333221 1112334455555 7777777889999999999994 444444577899
Q ss_pred EEEEcCC-CCcEEEEEe
Q 010769 454 SVAFSED-SPFVLAIGG 469 (502)
Q Consensus 454 ~~~~spd-~~~llasg~ 469 (502)
|++|--. -..+.+++.
T Consensus 258 sccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTTA 274 (310)
T ss_pred EEEecCCCccEEEEEeh
Confidence 9999644 232344443
No 428
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.73 E-value=4 Score=43.01 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=73.8
Q ss_pred ceeeEEecCC-CCcEEEEEecCCcEEEEECCC-------C-------------eeeEEeccCCCCeEEEEEc--CCCCcE
Q 010769 268 SVLGLAWNKE-FRNILASASADKQVKIWDVAA-------G-------------KCNLTLEHHTDKVQAVAWN--HHSPQI 324 (502)
Q Consensus 268 ~V~~l~~~~~-~~~~l~sgs~Dg~v~vwd~~~-------~-------------~~~~~~~~h~~~v~~l~~~--~~~~~~ 324 (502)
.|+.|....- +..+|+.|..||.|.+|.+.+ . ++-..+. ....+++|+++ ... ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence 4555544322 245899999999999997531 0 0112222 34578999998 555 78
Q ss_pred EEEEECCCcEEEEeCCCC--CCc-cceEeecCCeEEEEeCCCC--CC---EEEEEeCCCeEEEEEC
Q 010769 325 LLSGSFDRSVVMKDARIS--THS-GFKWAVAADVESLAWDPHA--EH---SFVVSLEDGTIKGFDI 382 (502)
Q Consensus 325 l~s~~~dg~i~vwd~~~~--~~~-~~~~~~~~~v~~v~~~p~~--~~---~l~~~~~dg~i~i~d~ 382 (502)
+|+++....|.||-.... +.. .....+...|.+|+|.++. +. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888765542 111 1122466779999997754 22 6777889999999888
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.37 E-value=0.011 Score=57.38 Aligned_cols=136 Identities=17% Similarity=0.163 Sum_probs=92.3
Q ss_pred CCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEE
Q 010769 206 REKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASA 285 (502)
Q Consensus 206 s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sg 285 (502)
.+.+.-+++++.+..+..||-...-. ....-++....++|..++...++.+
T Consensus 43 ~~e~~nlavaca~tiv~~YD~agq~~-----------------------------le~n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDKAGQVI-----------------------------LELNPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred ecCCCceehhhhhhHHHhhhhhccee-----------------------------cccCCchhHhhhhhccccchhhhhh
Confidence 45555588888888888888532100 0012346677888888877677778
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCC
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAE 365 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 365 (502)
-..+.+.+|++.+......=.+.+..-.-+.|++.. ..++.+...|.+.+++.++.+.....-.|...+++++|.+.+
T Consensus 94 ek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd- 171 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED- 171 (615)
T ss_pred hcCCCeeechhhhhhHHHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-
Confidence 888999999998653221111111122227888877 778888899999999999887776555688899999999854
Q ss_pred CEEEEEeC
Q 010769 366 HSFVVSLE 373 (502)
Q Consensus 366 ~~l~~~~~ 373 (502)
+.+.++.
T Consensus 172 -~vil~dc 178 (615)
T KOG2247|consen 172 -YVILCDC 178 (615)
T ss_pred -eeeecCc
Confidence 3444443
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.35 E-value=4.1 Score=38.51 Aligned_cols=151 Identities=10% Similarity=0.084 Sum_probs=72.5
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCC-CC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARI-ST 343 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~ 343 (502)
-...+..+.-+++ +.++++++.-....-|+.-...-...-+..+..|++|.|.|++ .+.+ ....|.|++-+... ..
T Consensus 143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~-~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWM-LARGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEE-EeCCcEEEEccCCCCcc
Confidence 3467888888888 4577777665566678754322222223356899999999997 5544 44888888877211 11
Q ss_pred C----ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCC
Q 010769 344 H----SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLV 416 (502)
Q Consensus 344 ~----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~ 416 (502)
. ........-.+..++|.+.+. +++ ++..|.+. .....+ +.-.... .-...+..|.|.+.
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa-~gg~G~l~-~S~DgG---------ktW~~~~~~~~~~~n~~~i~f~~~- 286 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE-IWA-VGGSGTLL-VSTDGG---------KTWQKDRVGENVPSNLYRIVFVNP- 286 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS--EEE-EESTT-EE-EESSTT---------SS-EE-GGGTTSSS---EEEEEET-
T ss_pred ccccccCCcccCceeeEEEEecCCCC-EEE-EeCCccEE-EeCCCC---------ccceECccccCCCCceEEEEEcCC-
Confidence 0 000111223478899998644 444 55566543 333333 2222222 22455788888764
Q ss_pred CCEEEEEeCCCcEEEE
Q 010769 417 PNLLATGSTDKMVKLW 432 (502)
Q Consensus 417 ~~~l~t~s~dg~i~vw 432 (502)
..-.+.+.+|.|--|
T Consensus 287 -~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 -DKGFVLGQDGVLLRY 301 (302)
T ss_dssp -TEEEEE-STTEEEEE
T ss_pred -CceEEECCCcEEEEe
Confidence 334444567766544
No 431
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.33 E-value=7 Score=36.55 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=61.8
Q ss_pred CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEE------CCCcEEEEeCCCCCCccceE----eecCCeEEE
Q 010769 289 KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGS------FDRSVVMKDARISTHSGFKW----AVAADVESL 358 (502)
Q Consensus 289 g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~----~~~~~v~~v 358 (502)
..|++||..+.+-..--.+-.+.|++|.|..+. .++++|. ....+..||+.+..-..... ...+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 459999988877665555667899999998555 6777664 35567889987765322222 235778888
Q ss_pred EeCCC-CCCEEEEEe-C--CCeEEEEECCCC
Q 010769 359 AWDPH-AEHSFVVSL-E--DGTIKGFDIRTA 385 (502)
Q Consensus 359 ~~~p~-~~~~l~~~~-~--dg~i~i~d~~~~ 385 (502)
.+... ...+++.|. . +..|..||-.+.
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 77443 333454544 2 334777765544
No 432
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.30 E-value=6.5 Score=36.09 Aligned_cols=168 Identities=10% Similarity=0.033 Sum_probs=96.0
Q ss_pred eeeEEeccC-CCCeEEEEEcCCCCcEEEEEECCC--cEEEEeCCCCCCccceEeecCC--eEEEEeCCCCCCEEEEEeCC
Q 010769 300 KCNLTLEHH-TDKVQAVAWNHHSPQILLSGSFDR--SVVMKDARISTHSGFKWAVAAD--VESLAWDPHAEHSFVVSLED 374 (502)
Q Consensus 300 ~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d 374 (502)
+.+.++.+. ..-.+.+.|..++ .++-+.+.-| .|+.+|+.+++... ....... -..++.. +..++...-.+
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~-~~~l~~~~FgEGit~~--~d~l~qLTWk~ 109 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ-SVPLPPRYFGEGITIL--GDKLYQLTWKE 109 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE-EEE-TTT--EEEEEEE--TTEEEEEESSS
T ss_pred EEEEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE-EEECCccccceeEEEE--CCEEEEEEecC
Confidence 345555422 3456788886666 7777777766 78899999876543 2222222 2333333 24466677788
Q ss_pred CeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC---CCC
Q 010769 375 GTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK---AGA 451 (502)
Q Consensus 375 g~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~---~~~ 451 (502)
+...+||..+. +.+.++. ..+.-..++.. + ..|+.......++++|..+.+.......... ...
T Consensus 110 ~~~f~yd~~tl---------~~~~~~~-y~~EGWGLt~d--g-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 110 GTGFVYDPNTL---------KKIGTFP-YPGEGWGLTSD--G-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp SEEEEEETTTT---------EEEEEEE--SSS--EEEEC--S-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred CeEEEEccccc---------eEEEEEe-cCCcceEEEcC--C-CEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 99999999876 5555554 33556777733 4 4455544466799999887664333222222 234
Q ss_pred EEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcccc
Q 010769 452 VFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGIS 486 (502)
Q Consensus 452 v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~ 486 (502)
++-+.|. +|. +.|-.=....|...|..+|..+.
T Consensus 177 LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 177 LNELEYI-NGK-IYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BEEE
T ss_pred cEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeEEE
Confidence 5667775 443 56655566677788888887654
No 433
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=7.2 Score=36.07 Aligned_cols=167 Identities=14% Similarity=0.125 Sum_probs=102.3
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeec--CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCC
Q 010769 309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVA--ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAK 386 (502)
Q Consensus 309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 386 (502)
.+-+..+.++. ++...+..+.-++++|+.++..+....... +-..++..+ | ++.+++..+.-+.++|+....
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCC
Confidence 34455666664 567777788889999999988765443332 333444443 3 477777756667789998773
Q ss_pred CCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEE
Q 010769 387 SDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVL 465 (502)
Q Consensus 387 ~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~ll 465 (502)
. ....-+.......-..++.| | ++...+..|+-+.+-|+.+... .++.... -...+.++..+++.-| +
T Consensus 160 s------P~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y-~ 228 (370)
T COG5276 160 S------PQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAY-L 228 (370)
T ss_pred C------ceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeE-E
Confidence 2 12223333334444667777 3 6777777899999999987653 3333332 3336888988888764 4
Q ss_pred EEEeCCCcEEEEECCCCccccccccCCCCC
Q 010769 466 AIGGSKGKLEIWDTLSDAGISNRFSKYSKP 495 (502)
Q Consensus 466 asg~~dg~i~vwd~~~~~~~~~~~~~~~~~ 495 (502)
+. ... .+.+-|..+.+. .++|+.+...
T Consensus 229 vv-y~e-gvlivd~s~~ss-p~~~gsyet~ 255 (370)
T COG5276 229 VV-YDE-GVLIVDVSGPSS-PTVFGSYETS 255 (370)
T ss_pred EE-ccc-ceEEEecCCCCC-ceEeeccccC
Confidence 43 333 467777755442 3445554443
No 434
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.11 E-value=0.035 Score=53.33 Aligned_cols=12 Identities=8% Similarity=0.326 Sum_probs=7.3
Q ss_pred CCCCEEEEecCC
Q 010769 207 EKGNFMAVGSME 218 (502)
Q Consensus 207 ~~~~~la~g~~d 218 (502)
|+..=|++|+.|
T Consensus 190 PDSTDFVCGTLD 201 (458)
T PF10446_consen 190 PDSTDFVCGTLD 201 (458)
T ss_pred CCcccccCCCcC
Confidence 556666666654
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.99 E-value=0.44 Score=29.94 Aligned_cols=33 Identities=24% Similarity=0.238 Sum_probs=27.6
Q ss_pred cceeeEEecCCCC--cEEEEEecCCcEEEEECCCC
Q 010769 267 DSVLGLAWNKEFR--NILASASADKQVKIWDVAAG 299 (502)
Q Consensus 267 ~~V~~l~~~~~~~--~~l~sgs~Dg~v~vwd~~~~ 299 (502)
++|.++.|+|... .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998745 68888888899999999853
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=92.97 E-value=7.6 Score=39.72 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=30.0
Q ss_pred CcEEEEEecCC---cEEEEECCCCeeeE--EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC
Q 010769 279 RNILASASADK---QVKIWDVAAGKCNL--TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS 342 (502)
Q Consensus 279 ~~~l~sgs~Dg---~v~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 342 (502)
+.+.+.|+.++ ++..||..+.+-.. .+.........+.+ ++ .+.+.| |.+.+||.++.
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~-~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GR-RLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CC-EEEEEC---CceEEecCCCC
Confidence 45667777553 47788887664332 11111111122222 33 566666 35678887654
No 437
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.97 E-value=5.6 Score=41.97 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=69.8
Q ss_pred cEEEEEECCCcEEEEeCCC-------C----C--------CccceEeecCCeEEEEeC--CCCCCEEEEEeCCCeEEEEE
Q 010769 323 QILLSGSFDRSVVMKDARI-------S----T--------HSGFKWAVAADVESLAWD--PHAEHSFVVSLEDGTIKGFD 381 (502)
Q Consensus 323 ~~l~s~~~dg~i~vwd~~~-------~----~--------~~~~~~~~~~~v~~v~~~--p~~~~~l~~~~~dg~i~i~d 381 (502)
.+|+.+..||.|.+|.+.. . . .+.........++.++++ .. .+++++++....|.+|-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-SRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-ceEEEEecCCceEEEEE
Confidence 6889999999999997531 0 0 012233456678889987 43 44788888888888876
Q ss_pred CCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCC--CC---EEEEEeCCCcEEEEEC
Q 010769 382 IRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLV--PN---LLATGSTDKMVKLWDL 434 (502)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--~~---~l~t~s~dg~i~vwd~ 434 (502)
...... ......-..|...|.+|+|.++. +. .|++++-.|.+.+|++
T Consensus 194 f~l~~~------r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDE------RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eecccc------ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 654311 01111122366778899998754 22 7888899999999887
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=3.9 Score=40.76 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=52.6
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCcEEEEE---------CCCCCeeEE----------EEecCCCCCEEEEEEcCCC--Cc
Q 010769 405 KAVCTISYNPLVPNLLATGSTDKMVKLWD---------LSNNQPSCI----------ASRNPKAGAVFSVAFSEDS--PF 463 (502)
Q Consensus 405 ~~v~~l~~sp~~~~~l~t~s~dg~i~vwd---------~~~~~~~~~----------~~~~~~~~~v~~~~~spd~--~~ 463 (502)
-.|..+..++.| ..++-.|.+|.+.++= +..+++... ++... .-.+..++|+|+. .-
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~-~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST-SLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC-ceeeeeccccCCccCCc
Confidence 357788889988 7777777788655542 122332211 11111 1246788999986 22
Q ss_pred EEEEEeCCCcEEEEECCCCccccccc
Q 010769 464 VLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 464 llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
.|..-++|..||+|+++....+...-
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccC
Confidence 35566789999999999887774433
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.53 E-value=9.1 Score=35.75 Aligned_cols=219 Identities=12% Similarity=0.124 Sum_probs=116.9
Q ss_pred ceeeEEecCCCCcEEEEEecCCcEEEEECC------CC-eeeEEecc-----CCCCeEEEEEcCCC-----------CcE
Q 010769 268 SVLGLAWNKEFRNILASASADKQVKIWDVA------AG-KCNLTLEH-----HTDKVQAVAWNHHS-----------PQI 324 (502)
Q Consensus 268 ~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~------~~-~~~~~~~~-----h~~~v~~l~~~~~~-----------~~~ 324 (502)
.-+.|+++|. +.+-++....+...+||.. .. ..+-++.. .....+.+.|+... ...
T Consensus 24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3578999998 4577777778899999986 12 22333331 23467788887443 134
Q ss_pred EEEEECCCcEEEEeCCCCCC---cc-ceEe--ecCCe-EEEEeC--CCCCCEEEEEeCCCeEEEEECCCCCCCCC-----
Q 010769 325 LLSGSFDRSVVMKDARISTH---SG-FKWA--VAADV-ESLAWD--PHAEHSFVVSLEDGTIKGFDIRTAKSDPD----- 390 (502)
Q Consensus 325 l~s~~~dg~i~vwd~~~~~~---~~-~~~~--~~~~v-~~v~~~--p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----- 390 (502)
++.++.+|+|.-|....... .. .... ..+.| .-+++. ..+..+.++--..++|.+||-.-......
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67888999999998543222 11 1111 11222 234443 22344455556789999998654321000
Q ss_pred --CCCCCccEEEecCCC--CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcC------C
Q 010769 391 --STSQQSSFTLHAHDK--AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE------D 460 (502)
Q Consensus 391 --~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp------d 460 (502)
.+..-..+.+..-.+ .|+-..-.+.. +.=+.|..-|.|-+||+...- .......+....-+.|+..| .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~l-~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQL-LRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCcE-EEEeccCCcccCCceeeeChhhhCCCC
Confidence 000000000000000 11111112222 222333345789999987542 22222334445566777755 3
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcccccccc
Q 010769 461 SPFVLAIGGSKGKLEIWDTLSDAGISNRFS 490 (502)
Q Consensus 461 ~~~llasg~~dg~i~vwd~~~~~~~~~~~~ 490 (502)
+. ||+---.||+|..||..++..+..+..
T Consensus 261 g~-lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 261 GA-LLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CC-eEEeecCCceeEEecCCCCceeeeecC
Confidence 45 566555699999999998886655443
No 440
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=6.8 Score=40.94 Aligned_cols=181 Identities=10% Similarity=0.110 Sum_probs=92.7
Q ss_pred cCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceE---eecCCe-EEEEeCC
Q 010769 287 ADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKW---AVAADV-ESLAWDP 362 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v-~~v~~~p 362 (502)
.--.|+|+++ +|+.+..+.-....+..+.|+.+. -|++...+|++++|++-......... .....| .|-.|+
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~- 137 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH- 137 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-
Confidence 3456888885 466666664444588899999876 68888999999999986543322111 112233 444444
Q ss_pred CCCCEEEEEeCCCeEEEE-ECCCCCCCCCCCCCCccEEEec---CCCCeeEEEEcCCC--CCEEEEEe-CCCcEEEEECC
Q 010769 363 HAEHSFVVSLEDGTIKGF-DIRTAKSDPDSTSQQSSFTLHA---HDKAVCTISYNPLV--PNLLATGS-TDKMVKLWDLS 435 (502)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~sp~~--~~~l~t~s-~dg~i~vwd~~ 435 (502)
. + +++-..+|.+.+- +.... ..+++.. ..-+-+|-...+.. ...++-.. ..+ ..++-..
T Consensus 138 ~-G--Vavlt~~g~v~~i~~~~~~----------~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~ 203 (829)
T KOG2280|consen 138 N-G--VAVLTVSGQVILINGVEEP----------KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVE 203 (829)
T ss_pred C-c--eEEEecCCcEEEEcCCCcc----------hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccccee
Confidence 2 3 4444455555443 33221 1111111 11111121111111 01111111 011 1122222
Q ss_pred CCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 436 NNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 436 ~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
.... ....+....+.+..+..||++++ ||--...|.|.+-.+...+.+..
T Consensus 204 ~~~~-q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 204 ESRV-QLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred cccc-cccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhhhc
Confidence 2111 12222222467888999999996 88888899998888776655433
No 441
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.24 E-value=10 Score=35.71 Aligned_cols=176 Identities=9% Similarity=0.071 Sum_probs=92.3
Q ss_pred cEEEEECCCCeeeEEecc------CCCCeEEEEEcCCCC-----cEEEEEECCCcEEEEeCCCCCCccc-----------
Q 010769 290 QVKIWDVAAGKCNLTLEH------HTDKVQAVAWNHHSP-----QILLSGSFDRSVVMKDARISTHSGF----------- 347 (502)
Q Consensus 290 ~v~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~----------- 347 (502)
.|.+||+.+++.++++.- ..+.+..+.+..... ...++=+..+.|.|+|+.+++....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889999888777642 235677777766321 3344444557899999987653221
Q ss_pred --------eEeecCCeEEEEeCC---CCCCEEEEEe-CCCeEEEEECCCCCCCCCCCC---CCccEEEecCCCCeeEEEE
Q 010769 348 --------KWAVAADVESLAWDP---HAEHSFVVSL-EDGTIKGFDIRTAKSDPDSTS---QQSSFTLHAHDKAVCTISY 412 (502)
Q Consensus 348 --------~~~~~~~v~~v~~~p---~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~h~~~v~~l~~ 412 (502)
.+.....+..++.+| ++. .++-+. ....++-.............. ...+..+....+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r-~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGR-WLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCcc-EEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 112233456666655 332 344333 222333332211110000000 0112222222246778899
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCC----CCeeEEEEecCCCCCEEEEEEcC--CCCcEEEEE
Q 010769 413 NPLVPNLLATGSTDKMVKLWDLSN----NQPSCIASRNPKAGAVFSVAFSE--DSPFVLAIG 468 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~v~~~~~sp--d~~~llasg 468 (502)
.+.| .++++--..+.|..|+... .....+..-......+.++.+.+ +|. |.+.+
T Consensus 194 D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 194 DPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp ETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred CCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEEE
Confidence 9977 8888888889999999987 22223333222256788999999 776 44443
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.20 E-value=5.8 Score=41.39 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=62.0
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEe-cCCCCeeEEEEc--CCCCCEEEEEeCCCcEEEEECC-----CCC
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLH-AHDKAVCTISYN--PLVPNLLATGSTDKMVKLWDLS-----NNQ 438 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s--p~~~~~l~t~s~dg~i~vwd~~-----~~~ 438 (502)
..++......+.|||.+.+ ...+... .....|..+.|. |++ +.+++.|..+.|.+|--. ...
T Consensus 43 ~a~V~~~~~~LtIWD~~~~---------~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSG---------VLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred EEEEECCCCEEEEEEcCCc---------EEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcCC
Confidence 4445555668999999976 2222111 346789999886 466 677777788888888532 211
Q ss_pred e----eEEEEecCCC-CCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 439 P----SCIASRNPKA-GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 439 ~----~~~~~~~~~~-~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
| ........+. .+|....|.++|.. ++ |+ .+.+.|++-.
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L-vV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTL-VV-GS-GNQLFVFDKW 156 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeE-EE-Ee-CCEEEEECCC
Confidence 1 1122222333 57899999999973 43 32 2368888743
No 443
>PLN02153 epithiospecifier protein
Probab=92.14 E-value=6.9 Score=37.97 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=28.9
Q ss_pred CcEEEEECCCCCeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCC--------------CcEEEEECCCCc
Q 010769 427 KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIWDTLSDA 483 (502)
Q Consensus 427 g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~d--------------g~i~vwd~~~~~ 483 (502)
..|.+||+.+.+...+.... +......++.. -++. +++.||.. ..|..+|+.+..
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKY-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCE-EEEECcccCCccccccccccccccEEEEEcCccE
Confidence 45889999887754443211 10111122222 2343 78888852 257788876543
No 444
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.00 E-value=13 Score=36.30 Aligned_cols=198 Identities=13% Similarity=0.145 Sum_probs=109.6
Q ss_pred CcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcC----CCCcE-EEEEE-CC---CcEEEEeCCCCCCccceE
Q 010769 279 RNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNH----HSPQI-LLSGS-FD---RSVVMKDARISTHSGFKW 349 (502)
Q Consensus 279 ~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~-l~s~~-~d---g~i~vwd~~~~~~~~~~~ 349 (502)
..+++.....+-+.+||+. |+.++.+. .+.++.+.... .+... |+.++ .+ .+|++|-+..........
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4578888888999999987 55566664 23444443321 22121 33333 32 469999775322111011
Q ss_pred --------eecCCeEEEEe--CC-CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCC
Q 010769 350 --------AVAADVESLAW--DP-HAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPN 418 (502)
Q Consensus 350 --------~~~~~v~~v~~--~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 418 (502)
.....+..+|+ +| ++..++++...+|.+..|-+...... ......++.+.. .+.+-.|...... .
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g--~v~~~lVR~f~~-~sQ~EGCVVDDe~-g 220 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG--KVSATLVREFKV-GSQPEGCVVDDET-G 220 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS--SEEEEEEEEEE--SS-EEEEEEETTT-T
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC--cEeeEEEEEecC-CCcceEEEEeccc-C
Confidence 11123455554 44 35557778889999998888632110 000234566654 4478888888766 7
Q ss_pred EEEEEeCCCcEEEEECCCC---CeeEEEEecC--CCCCEEEEEEc--CCC-CcEEEEEeCCCcEEEEECCCCc
Q 010769 419 LLATGSTDKMVKLWDLSNN---QPSCIASRNP--KAGAVFSVAFS--EDS-PFVLAIGGSKGKLEIWDTLSDA 483 (502)
Q Consensus 419 ~l~t~s~dg~i~vwd~~~~---~~~~~~~~~~--~~~~v~~~~~s--pd~-~~llasg~~dg~i~vwd~~~~~ 483 (502)
.|+.+=.+.-|.-|+.... ....+....+ ....|-.|+.- +++ .|||++.-.+++..||+.....
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 8999988877777777532 2223333322 34567777764 343 5788888788899999987643
No 445
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.68 E-value=12 Score=35.38 Aligned_cols=160 Identities=11% Similarity=0.158 Sum_probs=75.5
Q ss_pred ccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769 306 EHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 306 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~ 385 (502)
..-.+.+..+.-++++ .+++++..-..+.-|+--...-..........|.++.|.|++. +......|.|++=+....
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~--lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN--LWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS---EEEEETTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC--EEEEeCCcEEEEccCCCC
Confidence 3445778888889998 7666665555555676543322222333467799999999854 434458888888772221
Q ss_pred CCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEE-ecCCCCCEEEEEEcCCCCcE
Q 010769 386 KSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIAS-RNPKAGAVFSVAFSEDSPFV 464 (502)
Q Consensus 386 ~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l 464 (502)
.... .+++..+....-.+..++|.+.+ .+.++|+ .|.+ +.....++.-.... ...-.+.++.+.|.+... -
T Consensus 218 ~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-g 289 (302)
T PF14870_consen 218 GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-G 289 (302)
T ss_dssp EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-E
T ss_pred cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-e
Confidence 0000 01111111223347889999875 5555554 4544 44555555211111 123345688888876654 2
Q ss_pred EEEEeCCCcEEEE
Q 010769 465 LAIGGSKGKLEIW 477 (502)
Q Consensus 465 lasg~~dg~i~vw 477 (502)
++ -|.+|.|.-|
T Consensus 290 f~-lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FV-LGQDGVLLRY 301 (302)
T ss_dssp EE-E-STTEEEEE
T ss_pred EE-ECCCcEEEEe
Confidence 44 4678877655
No 446
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.51 E-value=11 Score=37.08 Aligned_cols=149 Identities=7% Similarity=0.029 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCcEEEEEE-----------CCC-cEEEEeCCCCCCc----cceEeecCCeEEEEeCCCCCCEEEEEeC
Q 010769 310 DKVQAVAWNHHSPQILLSGS-----------FDR-SVVMKDARISTHS----GFKWAVAADVESLAWDPHAEHSFVVSLE 373 (502)
Q Consensus 310 ~~v~~l~~~~~~~~~l~s~~-----------~dg-~i~vwd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 373 (502)
.....|+|.++| +++++-. ..+ .|.+++-....-. ..+...-.....+++.+++ ++++..
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVATP 89 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeCC
Confidence 456678888888 6555542 123 6666654432211 1111222345778888764 444444
Q ss_pred CCeEEEEECCCCCCCCCCCCCCccEE-Eec----CCCCeeEEEEcCCCCCEEEEEeCC-------------------CcE
Q 010769 374 DGTIKGFDIRTAKSDPDSTSQQSSFT-LHA----HDKAVCTISYNPLVPNLLATGSTD-------------------KMV 429 (502)
Q Consensus 374 dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~----h~~~v~~l~~sp~~~~~l~t~s~d-------------------g~i 429 (502)
...+++.|........ . ....+.. +.. +......++|.|+| .+.++-+.. |.|
T Consensus 90 ~~i~~~~d~~gdg~ad-~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 90 PDILFLRDKDGDDKAD-G-EREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CeEEEEeCCCCCCCCC-C-ccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceE
Confidence 4433344543221000 0 0111211 222 23457889999998 555543311 345
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG 469 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~ 469 (502)
.-++....+.. +. ..++ .....++|+|+|. ++++-.
T Consensus 167 ~r~~pdg~~~e-~~-a~G~-rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKLR-VV-AHGF-QNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred EEEecCCCeEE-EE-ecCc-CCCccceECCCCC-EEEEcc
Confidence 55555544421 11 1222 3356899999998 465433
No 447
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=12 Score=34.72 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=95.7
Q ss_pred ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEecc-CC-CCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCC
Q 010769 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEH-HT-DKVQAVAWNHHSPQILLSGSFDRSVVMKDARIST 343 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 343 (502)
.+-+..+.++.+ +...+..+.-++|.|+.+...-..+.. .. +--.++.. .| +++..+..+.-+.+.|+..++
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCC
Confidence 456777888765 677777888899999987643332211 12 33344444 45 778888877788899998877
Q ss_pred CccceEee---cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCC-CeeEEEEcCCCCCE
Q 010769 344 HSGFKWAV---AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDK-AVCTISYNPLVPNL 419 (502)
Q Consensus 344 ~~~~~~~~---~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~~ 419 (502)
.+...-.. ......++.+- ++.+++..++-+.+.|+... ..+++.-.-..+ .+.++..+++. .+
T Consensus 160 sP~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp--------~sPvli~~~n~g~g~~sv~vsdnr-~y 227 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNP--------HSPVLIGSYNTGPGTYSVSVSDNR-AY 227 (370)
T ss_pred CceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCC--------CCCeEEEEEecCCceEEEEecCCe-eE
Confidence 65533222 22335666653 36777888999999999987 344444333333 78888888753 33
Q ss_pred EEEEeCCCcEEEEECCCCC
Q 010769 420 LATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 420 l~t~s~dg~i~vwd~~~~~ 438 (502)
++. ...| +.+-|..+.+
T Consensus 228 ~vv-y~eg-vlivd~s~~s 244 (370)
T COG5276 228 LVV-YDEG-VLIVDVSGPS 244 (370)
T ss_pred EEE-cccc-eEEEecCCCC
Confidence 333 3333 5566665543
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.40 E-value=14 Score=35.49 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=15.8
Q ss_pred CEEEEEeCCCc----EEEEECCCCCee
Q 010769 418 NLLATGSTDKM----VKLWDLSNNQPS 440 (502)
Q Consensus 418 ~~l~t~s~dg~----i~vwd~~~~~~~ 440 (502)
++.+.|+.++. +.+||+.+.+..
T Consensus 173 ~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 173 ELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEcCCCCccccceEEEecCCCeeE
Confidence 67777776543 568898887643
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.31 E-value=2.9 Score=37.63 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=55.1
Q ss_pred EeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-----ecCCCCeeEEEEcCCCCCEEEEE
Q 010769 349 WAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-----HAHDKAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 349 ~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~t~ 423 (502)
.....++..+... +. ++++-+.+|.+++||+.+.+......+..++... ......|..+.++.+| .-|++-
T Consensus 9 i~Lgs~~~~l~~~--~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l 84 (219)
T PF07569_consen 9 IVLGSPVSFLECN--GS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL 84 (219)
T ss_pred EecCCceEEEEeC--CC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEE
Confidence 3344555555543 33 7888999999999999987543322111111111 0356778999999877 666665
Q ss_pred eCCCcEEEEECCCCCe
Q 010769 424 STDKMVKLWDLSNNQP 439 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~ 439 (502)
+ +|..+.|+..-+..
T Consensus 85 s-ng~~y~y~~~L~~W 99 (219)
T PF07569_consen 85 S-NGDSYSYSPDLGCW 99 (219)
T ss_pred e-CCCEEEecccccee
Confidence 5 57889998876654
No 450
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.26 E-value=17 Score=36.10 Aligned_cols=152 Identities=11% Similarity=0.111 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEE-EEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 010769 312 VQAVAWNHHSPQILLSGSFDRSVV-MKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPD 390 (502)
Q Consensus 312 v~~l~~~~~~~~~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 390 (502)
...+..++++ .+++.+. .|.+. -||--...=..........+..+.|.+++. +++ .+..|.+.. ....+....
T Consensus 241 f~~v~~~~dG-~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l-~g~~G~l~~-S~d~G~~~~- 314 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWL-LTRGGGLYV-SKGTGLTEE- 314 (398)
T ss_pred eeeEEEcCCC-CEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEE-EeCCceEEE-ecCCCCccc-
Confidence 3445556665 4444443 34332 333221100111223345688899988765 444 445666543 222221000
Q ss_pred CCCCCccEEEec--CCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCe-eEEEEecCCCCCEEEEEEcCCCCcEEEE
Q 010769 391 STSQQSSFTLHA--HDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQP-SCIASRNPKAGAVFSVAFSEDSPFVLAI 467 (502)
Q Consensus 391 ~~~~~~~~~~~~--h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~spd~~~llas 467 (502)
......... ....+..+.|.+++ . ++.++..|.+.... ..++. ........-...++.+.|.+++. .++
T Consensus 315 ---~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~- 386 (398)
T PLN00033 315 ---DFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFV- 386 (398)
T ss_pred ---ccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEE-
Confidence 001111111 12358889998865 4 55556677665553 33432 12111223345788999988776 354
Q ss_pred EeCCCcEEEE
Q 010769 468 GGSKGKLEIW 477 (502)
Q Consensus 468 g~~dg~i~vw 477 (502)
.|.+|.|.-|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 4678877655
No 451
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.26 E-value=16 Score=35.98 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=24.5
Q ss_pred EEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCC------cEEEEECCC
Q 010769 429 VKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKG------KLEIWDTLS 481 (502)
Q Consensus 429 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg------~i~vwd~~~ 481 (502)
+.+||+.+.+...+........... +..-++. ++++||... .|.++....
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~--av~~~~~-iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGV--SVSWNNG-VLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred hheEEecCCcccccCcCCCCccceE--EEEeCCE-EEEEcCCCCCCcEeeeEEEEEEcC
Confidence 4578888776433322221111122 2333454 677887642 455555544
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.92 E-value=7.5 Score=31.52 Aligned_cols=120 Identities=11% Similarity=0.158 Sum_probs=70.4
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCC----CCCEEEEEeCCCcEEEE
Q 010769 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPL----VPNLLATGSTDKMVKLW 432 (502)
Q Consensus 357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~t~s~dg~i~vw 432 (502)
.-.|....+ .|++++.-|.|.+++.......... ....+.. ..-...|++|+-.+- ....|+.|+. .++..|
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~-LNin~~italaaG~l~~~~~~D~LliGt~-t~llaY 78 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISF-LNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY 78 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeE-EECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence 345666555 6888889999999987654221111 0122333 335667888765552 3356777765 569999
Q ss_pred ECCCCCeeEEEEecCCCCCEEEEEEc---C-CCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 433 DLSNNQPSCIASRNPKAGAVFSVAFS---E-DSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 433 d~~~~~~~~~~~~~~~~~~v~~~~~s---p-d~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
|+..+.- ++....+ ..|.++.+- . ..+ ++++ |.+..|.-||....+..
T Consensus 79 DV~~N~d--~Fyke~~-DGvn~i~~g~~~~~~~~-l~iv-GGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 79 DVENNSD--LFYKEVP-DGVNAIVIGKLGDIPSP-LVIV-GGNCSIQGFDYEGNEIF 130 (136)
T ss_pred EcccCch--hhhhhCc-cceeEEEEEecCCCCCc-EEEE-CceEEEEEeCCCCcEEE
Confidence 9998863 3332222 446666662 2 234 4444 45667887777655543
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.79 E-value=17 Score=35.32 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=20.7
Q ss_pred cEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 010769 428 MVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSK 471 (502)
Q Consensus 428 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~d 471 (502)
.+.+||..+.+...+..+... .-...+..-++. +++.||.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~-iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNG-VLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCC--ceeeEEEEcCCE-EEEEeccC
Confidence 467888877654333322211 112223333454 67778765
No 454
>PLN02153 epithiospecifier protein
Probab=90.64 E-value=17 Score=35.20 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=14.7
Q ss_pred CcEEEEEecC-----CcEEEEECCCCee
Q 010769 279 RNILASASAD-----KQVKIWDVAAGKC 301 (502)
Q Consensus 279 ~~~l~sgs~D-----g~v~vwd~~~~~~ 301 (502)
..+++.|+.+ ..+.+||+.+.+-
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEE
Confidence 3466667653 3578889877643
No 455
>PLN02193 nitrile-specifier protein
Probab=90.30 E-value=9.1 Score=39.06 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=35.4
Q ss_pred CEEEEEeCC----CcEEEEECCCCCeeEEEEec--CCCCCEEEEEEcCCCCcEEEEEeCC--------------CcEEEE
Q 010769 418 NLLATGSTD----KMVKLWDLSNNQPSCIASRN--PKAGAVFSVAFSEDSPFVLAIGGSK--------------GKLEIW 477 (502)
Q Consensus 418 ~~l~t~s~d----g~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~llasg~~d--------------g~i~vw 477 (502)
.+++.++.+ ..+.+||+.+.+...+.... +......+++. -++. +++.||.. ..+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCE-EEEECCccCCccccccCccceeccEEEE
Confidence 666666655 45899999988754443221 11111122222 2344 77888853 247888
Q ss_pred ECCCCc
Q 010769 478 DTLSDA 483 (502)
Q Consensus 478 d~~~~~ 483 (502)
|+.+.+
T Consensus 408 D~~t~~ 413 (470)
T PLN02193 408 DTETLQ 413 (470)
T ss_pred EcCcCE
Confidence 887653
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.99 E-value=1.6 Score=45.49 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCC---CCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecC---CCCc
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVID---EVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNK---EFRN 280 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~ 280 (502)
++...|+++..||.+......... ........+............. .. ......-...+..++++. ++..
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFP---WS-YRGDNSSSSVAASLAVSSSEINDDT 231 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS----TT----SSSS---EEEEEE-----ETTT
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCC---cc-cccCCCCCCccceEEEecceeCCCC
Confidence 367788888999998888876422 1111111110000000000000 00 000111234455555555 2367
Q ss_pred EEEEEecCCcEEEEECCCCeeeEEec
Q 010769 281 ILASASADKQVKIWDVAAGKCNLTLE 306 (502)
Q Consensus 281 ~l~sgs~Dg~v~vwd~~~~~~~~~~~ 306 (502)
+|++.+.|+++|+||+.+++++.++.
T Consensus 232 ~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 232 FLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEec
Confidence 99999999999999999999977653
No 457
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.93 E-value=9.2 Score=31.00 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=65.8
Q ss_pred EEecCCCCcEEEEEecCCcEEEEECCCCe--------eeEEeccCCCCeEEEEEcCC----CCcEEEEEECCCcEEEEeC
Q 010769 272 LAWNKEFRNILASASADKQVKIWDVAAGK--------CNLTLEHHTDKVQAVAWNHH----SPQILLSGSFDRSVVMKDA 339 (502)
Q Consensus 272 l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~--------~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~ 339 (502)
-.|.... ..|++++.-|.|.|++..... .+..+. -...|++|+-.+- +...|+.|+ ...|..||+
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3455553 367888888999999876432 334443 4567777765442 235566665 567999999
Q ss_pred CCCCCccceEeecCCeEEEEeCCCC--CCEEEEEeCCCeEEEEECCCC
Q 010769 340 RISTHSGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~ 385 (502)
....-.. .......+.++.+-.-+ +.-++..+.+..|.-||..-.
T Consensus 81 ~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 8765443 33445667777662211 123444445677777776543
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.62 E-value=6.8 Score=38.44 Aligned_cols=124 Identities=6% Similarity=0.090 Sum_probs=79.2
Q ss_pred eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
...++|.++.|+++.. .+++-..+..|.+++....... .......+..+..|.++.|+.+ .-+|..+..| +
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~-----l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ-----LEYTQECKTKNANILGFCWTSS--TEIAFITDQG-I 134 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh-----hHHHHHhccCcceeEEEEEecC--eeEEEEecCC-e
Confidence 3456899999999865 8999999999999988543110 1122233344556899999975 3455555444 7
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCc
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGG-SKGKLEIWDTLSDA 483 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~-~dg~i~vwd~~~~~ 483 (502)
-+|-....+. .+.....|...|.-..|+++.+.+|.+.+ ..+++.=+.++++.
T Consensus 135 e~y~v~pekr-slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 135 EFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEEEEchhhh-hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 7776554331 23344556667888889999875555555 44455555555544
No 459
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.42 E-value=17 Score=33.39 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=111.5
Q ss_pred cceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc
Q 010769 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG 346 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 346 (502)
..-..++-.|+ +..-+++...+.|--.|..+|+....--+....-..|..-|++.. -++-+.. .|.-.|-++.....
T Consensus 62 ~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~-Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 62 SAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSA-WITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCe-eEecCcc-eeEEecCcccceEE
Confidence 44566777888 457788888888888898998876655555666677888888843 3332222 45545554443322
Q ss_pred ceE---eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec-CCCCeeEEEEcCCCCCEEEE
Q 010769 347 FKW---AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA-HDKAVCTISYNPLVPNLLAT 422 (502)
Q Consensus 347 ~~~---~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~~~l~t 422 (502)
... ......+...|.+.|. +.+++. .|.---.|-. ...+..+.. ....-+.|+..|+| .+-++
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa----------~~~i~vfpaPqG~gpyGi~atpdG-svwya 205 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA----------RNVISVFPAPQGGGPYGICATPDG-SVWYA 205 (353)
T ss_pred eecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc----------cCceeeeccCCCCCCcceEECCCC-cEEEE
Confidence 111 2245578889999875 566654 2211111111 122222222 22345778888988 55555
Q ss_pred EeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 423 GSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 423 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
.-.++.|-..|...+....+-...........+--+|.++ +-++-...+.+..+|...
T Consensus 206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eccccceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCccc
Confidence 5556667777766654322322222223344555566666 455555556666666544
No 460
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.42 E-value=1.9 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=23.2
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCC--CcEEEE
Q 010769 447 PKAGAVFSVAFSEDSPFVLAIGGSK--GKLEIW 477 (502)
Q Consensus 447 ~~~~~v~~~~~spd~~~llasg~~d--g~i~vw 477 (502)
...+.-....|+|||++++.++... |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445678899999999888888877 777776
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=9.5 Score=42.54 Aligned_cols=151 Identities=15% Similarity=0.198 Sum_probs=86.4
Q ss_pred EECCCcEEEEeCCCCCCccceEeecCCeEEEEe--------CCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE
Q 010769 328 GSFDRSVVMKDARISTHSGFKWAVAADVESLAW--------DPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT 399 (502)
Q Consensus 328 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~--------~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 399 (502)
.+.|+.+.+|+..+.......-.....|..|.. .|.=.+++++++ --.|.++-+.-.............++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence 455889999999986655544455555555543 222233444443 33455554432211111100112244
Q ss_pred EecCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEEC----CCC-------C------------eeEEEEec-CCCCCEEEE
Q 010769 400 LHAHDKAVCTISYNPLVPNLLATGSTDKMVKLWDL----SNN-------Q------------PSCIASRN-PKAGAVFSV 455 (502)
Q Consensus 400 ~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~----~~~-------~------------~~~~~~~~-~~~~~v~~~ 455 (502)
+......|+++....+| +.+.+| .||. +|.+ ..+ + |. +..+. .+..+|..+
T Consensus 174 i~~dg~~V~~I~~t~nG-RIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENG-RIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQI 248 (1311)
T ss_pred eecCCceEEEEEeccCC-cEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceee
Confidence 45556778999877766 666555 4554 4432 111 0 11 22223 566789999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCccc
Q 010769 456 AFSEDSPFVLAIGGSKGKLEIWDTLSDAGI 485 (502)
Q Consensus 456 ~~spd~~~llasg~~dg~i~vwd~~~~~~~ 485 (502)
....... ++.+-+..|+|.+|++..+-..
T Consensus 249 ~ID~SR~-IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 249 TIDNSRN-ILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred Eeccccc-eeeeeccCceEEEEEccCCCcc
Confidence 9988776 7888999999999999874443
No 462
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.17 E-value=38 Score=37.02 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=75.0
Q ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE-ecCC----------CCeeEEEEcCCCCCEEE
Q 010769 353 ADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL-HAHD----------KAVCTISYNPLVPNLLA 421 (502)
Q Consensus 353 ~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~h~----------~~v~~l~~sp~~~~~l~ 421 (502)
.+...|+|+|.....|++....|...+|++....... .....+ ..+. ..-..+.|.++. ..|+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lL 219 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLL 219 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccC-----CcceeeccCCCccccCCCcccCcceeeEecCCC-CEEE
Confidence 4577899999888899999999999999992221100 111111 1111 233478898876 5566
Q ss_pred EEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC-cEEEEEeCCCcEEEEECCC
Q 010769 422 TGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP-FVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 422 t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~llasg~~dg~i~vwd~~~ 481 (502)
.++. ..+.++|+.+...............|..+.-+|..+ ++++. ....|...++..
T Consensus 220 v~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 220 VCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred EEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 6654 458999999876423222233456788888888722 22332 224688888877
No 463
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.70 E-value=14 Score=35.44 Aligned_cols=102 Identities=6% Similarity=0.025 Sum_probs=47.1
Q ss_pred CcEEEEEecC-----CcEEEEECCCCee---eEEeccCCCC--eEEEEEcCCCCcEEEEEECC-----CcEEEEeCCCCC
Q 010769 279 RNILASASAD-----KQVKIWDVAAGKC---NLTLEHHTDK--VQAVAWNHHSPQILLSGSFD-----RSVVMKDARIST 343 (502)
Q Consensus 279 ~~~l~sgs~D-----g~v~vwd~~~~~~---~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 343 (502)
..+++.|+.+ ..+..+|+.+.+. ...+..-..+ -.+++.. .+ .+++.|+.. ..+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence 3466667654 3566777766543 1222111111 1122222 23 677777642 357788877543
Q ss_pred Cccce-Eee--cCCeEEEEeCCCCCCEEEEEeCCCe----EEEEECCCC
Q 010769 344 HSGFK-WAV--AADVESLAWDPHAEHSFVVSLEDGT----IKGFDIRTA 385 (502)
Q Consensus 344 ~~~~~-~~~--~~~v~~v~~~p~~~~~l~~~~~dg~----i~i~d~~~~ 385 (502)
=.... ... .....++.. +..+++.|+.++. +.+||..+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~---~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKL---QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCCCCCcceEEEE---CCEEEEEcCCCCccccceEEEecCCC
Confidence 21110 000 111112222 2346777765542 467887764
No 464
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.53 E-value=27 Score=37.96 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=48.0
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEe----c-----------c----CCCCeEEEEEcCCCCcEE
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTL----E-----------H----HTDKVQAVAWNHHSPQIL 325 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~----~-----------~----h~~~v~~l~~~~~~~~~l 325 (502)
....|.++....- +.+++.+-.||+|.++|-.+.+.+... . + +-..+..++|+|.+ ..+
T Consensus 258 ~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~ 335 (753)
T PF11635_consen 258 LNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSL 335 (753)
T ss_pred cCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceE
Confidence 3466888887766 558999999999999997766443322 0 0 11234457899998 777
Q ss_pred EEEECCCcEE
Q 010769 326 LSGSFDRSVV 335 (502)
Q Consensus 326 ~s~~~dg~i~ 335 (502)
+.-..+|.+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 7778888755
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.27 E-value=4.2 Score=35.04 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=26.2
Q ss_pred cceeeEEecCCC-----CcEEEEEecCCcEEEEECC
Q 010769 267 DSVLGLAWNKEF-----RNILASASADKQVKIWDVA 297 (502)
Q Consensus 267 ~~V~~l~~~~~~-----~~~l~sgs~Dg~v~vwd~~ 297 (502)
..|..++|||.| +.+||+...++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 379999999953 5689999999999999865
No 466
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.25 E-value=3 Score=37.50 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=47.8
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEe
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASAS 286 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs 286 (502)
..+++|++-+.+|.+++||+.....+.+...+...-. ... ..-......|..+.++.+|. -|++-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~------------~~~-~~~~~~~~~i~~~~lt~~G~-PiV~ls 85 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLN------------SSP-VSDKSSSPNITSCSLTSNGV-PIVTLS 85 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhc------------ccc-cccCCCCCcEEEEEEcCCCC-EEEEEe
Confidence 3688999999999999999987655443211100000 000 00004567788888987744 454444
Q ss_pred cCCcEEEEECCCCe
Q 010769 287 ADKQVKIWDVAAGK 300 (502)
Q Consensus 287 ~Dg~v~vwd~~~~~ 300 (502)
+|....|+..-+.
T Consensus 86 -ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 86 -NGDSYSYSPDLGC 98 (219)
T ss_pred -CCCEEEeccccce
Confidence 4788888865443
No 467
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=88.21 E-value=0.24 Score=53.80 Aligned_cols=15 Identities=0% Similarity=0.091 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHHHccc
Q 010769 21 EPPSKEEIEEIINSGA 36 (502)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (502)
.+ +++.|+.|+.-+.
T Consensus 619 ~~-t~~~l~~ll~vl~ 633 (784)
T PF04931_consen 619 HL-TESGLQLLLDVLD 633 (784)
T ss_pred hc-CHHHHHHHHHHhc
Confidence 35 6777777665553
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.14 E-value=11 Score=39.40 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=27.8
Q ss_pred CccccccccccCCCceEEEEEecCCcceeEEEEEecC
Q 010769 138 DSEDLEDMTINPNDAVIVCARNEDDVSHLEVYILEES 174 (502)
Q Consensus 138 ~~~~v~~~~~~p~~~~l~~~~~~~~~~~l~v~~~~~~ 174 (502)
.++.+.+++-+|.+..++.|+.++ ++.+|.|...
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~---si~lfn~~~r 46 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDG---SIILFNFIPR 46 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCC---cEEEEeeccc
Confidence 456789999999999999999997 5677777544
No 469
>PLN02193 nitrile-specifier protein
Probab=87.91 E-value=34 Score=34.92 Aligned_cols=102 Identities=8% Similarity=0.062 Sum_probs=48.3
Q ss_pred CcEEEEEecC-----CcEEEEECCCCeeeEEecc----CCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEeCCCCCC
Q 010769 279 RNILASASAD-----KQVKIWDVAAGKCNLTLEH----HTDKVQAVAWNHHSPQILLSGSFDR-----SVVMKDARISTH 344 (502)
Q Consensus 279 ~~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~ 344 (502)
..+++.|+.+ ..+.+||+.+.+-...-.. ....-.++.. -.+ .+++.|+.++ .+..||+.+.+-
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCEE
Confidence 3466666654 3588889887654321110 1111112222 223 6777777654 356677665321
Q ss_pred ccce-----EeecCCeEEEEeCCCCCCEEEEEeCC----CeEEEEECCCC
Q 010769 345 SGFK-----WAVAADVESLAWDPHAEHSFVVSLED----GTIKGFDIRTA 385 (502)
Q Consensus 345 ~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d----g~i~i~d~~~~ 385 (502)
.... .........+.+ . ..+++.++.+ ..+.+||+.+.
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~-gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--Q-GKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--C-CcEEEEECCCCCccCceEEEECCCC
Confidence 1000 000111122222 2 3366666654 45888998765
No 470
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.70 E-value=45 Score=35.08 Aligned_cols=167 Identities=14% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCcc---ceEeecCCeEEEEeCC-----CCCCEEEEEeC-C---Ce
Q 010769 309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSG---FKWAVAADVESLAWDP-----HAEHSFVVSLE-D---GT 376 (502)
Q Consensus 309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~v~~~p-----~~~~~l~~~~~-d---g~ 376 (502)
..+|..+.+.+++ ..+++...+|.|.+||........ ....+...+.--+|-+ .+..++++-+. . -.
T Consensus 129 ~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 6789999999888 889999999999999993222111 0111111111112222 12234443332 2 24
Q ss_pred EEEEECCCCCCCCCCCCCCccEEEe---cCCCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCC----
Q 010769 377 IKGFDIRTAKSDPDSTSQQSSFTLH---AHDKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKA---- 449 (502)
Q Consensus 377 i~i~d~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~---- 449 (502)
.+++.+... ...+..+. .+........|+-+. +.|+.- .++.|.+|++...+......+..-.
T Consensus 208 ykL~~l~~~--------~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~ 277 (670)
T PF10395_consen 208 YKLISLSNE--------SSSIFELSSTILENFGLEDSKFCYQF-GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES 277 (670)
T ss_pred EEEEEeccC--------CcceEEeehheeccCCcccceEEEeC-CEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccc
Confidence 677777222 13333332 222222223333222 333333 6778999999887644444443111
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 450 ~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
..+.++.--...+ +|. +.++.|++.|+.-...+.++-
T Consensus 278 ~~~vSl~~~s~nR-vLL--s~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 278 DDLVSLKPPSPNR-VLL--SVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ccceEeecCCCCe-EEE--EcCCEEEEEeehhhhhhhhhh
Confidence 1233443322233 455 346689999997666554433
No 471
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.66 E-value=34 Score=33.59 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=31.3
Q ss_pred cceeeEEecCCCCcEEEEEecCCcEEEEECCC-------Ceee-EEecc----CCCCeEEEEEcCCCCcEEEEEE
Q 010769 267 DSVLGLAWNKEFRNILASASADKQVKIWDVAA-------GKCN-LTLEH----HTDKVQAVAWNHHSPQILLSGS 329 (502)
Q Consensus 267 ~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~-------~~~~-~~~~~----h~~~v~~l~~~~~~~~~l~s~~ 329 (502)
...+.|++.++ + +++ ++.....++.+... .+.+ ..+.. +......+.|.|+| .+.++-+
T Consensus 72 ~~p~Gi~~~~~-G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 72 SMVTGLAVAVG-G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CCccceeEecC-C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 34678888887 4 444 44444333445431 1112 22322 12347789999998 5555444
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.40 E-value=6.4 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCC-----CCEEEEEeCCCeEEEEECCC
Q 010769 353 ADVESLAWDPHA-----EHSFVVSLEDGTIKGFDIRT 384 (502)
Q Consensus 353 ~~v~~v~~~p~~-----~~~l~~~~~dg~i~i~d~~~ 384 (502)
..+.+++|+|.| ..+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 45788899999999997654
No 473
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.07 E-value=30 Score=32.45 Aligned_cols=225 Identities=12% Similarity=0.132 Sum_probs=116.9
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCC---CCceeee-CCcchhhhhhccccCCccccccccCCcccceeeEEecCCC
Q 010769 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDE---VQPHVIL-GGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEF 278 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~---~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 278 (502)
++++|.+.+-++....+...+||.+.... ..++.+. ... .-..-....+.+.|+...
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-------------------~~~~~~~~PTGiVfN~~~ 88 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-------------------PPLAAEGTPTGQVFNGSD 88 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-------------------CCCCCCCCccEEEEeCCC
Confidence 34478888888888889999999862110 0111110 000 000122456667776431
Q ss_pred -----------CcEEEEEecCCcEEEEECCCCee-----eEEec-cCCCCe-EEEEEc--CCCCcEEEEEECCCcEEEEe
Q 010769 279 -----------RNILASASADKQVKIWDVAAGKC-----NLTLE-HHTDKV-QAVAWN--HHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 279 -----------~~~l~sgs~Dg~v~vwd~~~~~~-----~~~~~-~h~~~v-~~l~~~--~~~~~~l~s~~~dg~i~vwd 338 (502)
...++.++.||+|.-|...-+.. ...+. .....| ..+++. ..+..+.++--..++|.+||
T Consensus 89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 12467889999999998543221 12222 112333 234443 33434455555689999998
Q ss_pred CCCCCCccc-eE---------------eecCC--eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEE
Q 010769 339 ARISTHSGF-KW---------------AVAAD--VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTL 400 (502)
Q Consensus 339 ~~~~~~~~~-~~---------------~~~~~--v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 400 (502)
-.-...... .+ ...+. |+-..-.+.. +.=+.|..-|.|-+||+.- ..++++
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G----------~l~~r~ 237 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNG----------QLLRRV 237 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCC----------cEEEEe
Confidence 653321110 00 00000 1111112222 1234445567899999874 445555
Q ss_pred e--cCCCCeeEEEEcCC-----CCCEEEEEeCCCcEEEEECCCCCeeEEEEecCC------CCCEEEEEEcC
Q 010769 401 H--AHDKAVCTISYNPL-----VPNLLATGSTDKMVKLWDLSNNQPSCIASRNPK------AGAVFSVAFSE 459 (502)
Q Consensus 401 ~--~h~~~v~~l~~sp~-----~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~------~~~v~~~~~sp 459 (502)
. +.-..-+.|+..|- ...+|+---.||+|..||..+++. +-.+... ...++.++|-.
T Consensus 238 as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~--~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 238 ASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ--LGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce--eeeecCCCCCeEEecCeEEeeeCC
Confidence 2 22234466776552 225666655699999999988763 2222221 12467888865
No 474
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.96 E-value=17 Score=40.75 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=25.8
Q ss_pred ccceeeEEecCCCCcEEEEEecCCcEEEEECCC
Q 010769 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAA 298 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~ 298 (502)
......++|.|. .+++|.|...|.|+++-...
T Consensus 35 ~~~~~~~afD~~-q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPT-QGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccc-cceEEEEEecccEEEecccc
Confidence 345667788888 67999999999999997543
No 475
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.94 E-value=32 Score=32.67 Aligned_cols=242 Identities=15% Similarity=0.068 Sum_probs=112.7
Q ss_pred CCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEecC
Q 010769 209 GNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASAD 288 (502)
Q Consensus 209 ~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~D 288 (502)
+++|+.|+.+|...+. +.... ..+ ....+...|+++...+...-+++.++..
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~-~~~--------------------------~kl~~~~~v~q~~v~~~~~lLi~Lsgk~ 64 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQP-GTL--------------------------EKLIGRRSVTQIWVLEENNVLLMISGKK 64 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCC-CCe--------------------------EEecCcCceEEEEEEhhhCEEEEEeCCc
Confidence 4799999999876554 54211 011 1113567899999998844333334444
Q ss_pred CcEEEEECCCCee---------------eEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCC--CCccce---
Q 010769 289 KQVKIWDVAAGKC---------------NLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARIS--THSGFK--- 348 (502)
Q Consensus 289 g~v~vwd~~~~~~---------------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~--- 348 (502)
..++++++..-.. ....-.|......+.........++++....+|.++..... +.....
T Consensus 65 ~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~ 144 (302)
T smart00036 65 PQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKF 144 (302)
T ss_pred ceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccc
Confidence 4599999842221 01112344434444444322245556666777777654332 111110
Q ss_pred ---EeecCCeEEEEeCCC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCC-CCeeEEEEcCCCCCEEEEE
Q 010769 349 ---WAVAADVESLAWDPH-AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHD-KAVCTISYNPLVPNLLATG 423 (502)
Q Consensus 349 ---~~~~~~v~~v~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~sp~~~~~l~t~ 423 (502)
.....++..+..+++ ....+.+|+..+...++++......... ....+...... .++..+.+.. + .+|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d--~sl~~~~~~~~~~p~~i~~l~~-~-e~Llc- 219 (302)
T smart00036 145 LFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKED--LSLPFLSEETSLKPISVVQVPR-D-EFLLC- 219 (302)
T ss_pred cccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccc--ccccccccccccCceEEEEECC-C-eEEEE-
Confidence 011122333322332 1235666766433344444321000000 00000111111 4555555443 3 44443
Q ss_pred eCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 010769 424 STDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISNRF 489 (502)
Q Consensus 424 s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~~~ 489 (502)
- +....+-|....+......+. -.+...++++.. +|+++. + +..|.|+++.++..++.+-
T Consensus 220 ~-~~~~v~Vn~~G~~~~r~~~l~-w~~~p~~~~~~~--pyll~~-~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 220 Y-DEFGVFVNLYGKRRSRNPILH-WEFMPESFAYHS--PYLLAF-H-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred E-CcEEEEEeCCCCccccceEEE-cCCcccEEEEEC--CEEEEE-c-CCcEEEEECCCCceEEEEe
Confidence 3 333555555531211111121 124456777763 666665 3 4569999999998765543
No 476
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.41 E-value=60 Score=35.30 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=42.0
Q ss_pred cEEEEEecCCcEEEEECCCCeeeEEeccCCCCeE-------------EEEEcC--CCCcEEEEEEC----------CCcE
Q 010769 280 NILASASADKQVKIWDVAAGKCNLTLEHHTDKVQ-------------AVAWNH--HSPQILLSGSF----------DRSV 334 (502)
Q Consensus 280 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~~l~s~~~----------dg~i 334 (502)
..++.++.|+.|.-.|..+|+.+..|.. .+.|. .+.-.| .+ ..+++|+. +|.|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEE
Confidence 3788889999999999999998877642 22210 011111 02 35666643 6889
Q ss_pred EEEeCCCCCCc
Q 010769 335 VMKDARISTHS 345 (502)
Q Consensus 335 ~vwd~~~~~~~ 345 (502)
+-+|.++++..
T Consensus 339 ~A~Da~TGkl~ 349 (764)
T TIGR03074 339 RAFDVNTGALV 349 (764)
T ss_pred EEEECCCCcEe
Confidence 99999988754
No 477
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.67 E-value=28 Score=30.87 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=62.9
Q ss_pred EEEEEecCCcEEEEECC--CCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCC------cEEEE-eCCCC----CCcc-
Q 010769 281 ILASASADKQVKIWDVA--AGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDR------SVVMK-DARIS----THSG- 346 (502)
Q Consensus 281 ~l~sgs~Dg~v~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------~i~vw-d~~~~----~~~~- 346 (502)
.|+.+...+.|.+|++. ..+...+|.. -+.|..+.++..| .+|+|--.+. .+|+| +.+.. ....
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45444666789999998 3456677764 3789999999999 7888764322 45554 22211 1100
Q ss_pred ---------------------ceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769 347 ---------------------FKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 347 ---------------------~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~ 385 (502)
........+.+++..|..++ +++|+ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEE
Confidence 01122446778888887664 55554 567888887654
No 478
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.62 E-value=52 Score=33.91 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=57.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecC-CCCeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEE
Q 010769 364 AEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAH-DKAVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCI 442 (502)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~ 442 (502)
....++.+..+|.++...+..... .......+. ....+++.+...++.+|+.||.-|.=.++.+.......+
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~ 293 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVL 293 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEE
T ss_pred CCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEE
Confidence 455899999999999888775410 111222222 455677777764334888888755544444444444445
Q ss_pred EEecCCCCCEEEEEEcCC----CC------cEEEEEe--CCCcEEEEE
Q 010769 443 ASRNPKAGAVFSVAFSED----SP------FVLAIGG--SKGKLEIWD 478 (502)
Q Consensus 443 ~~~~~~~~~v~~~~~spd----~~------~llasg~--~dg~i~vwd 478 (502)
..+. .-+||..+++.+. .. .+++++| .+|.+++..
T Consensus 294 ~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 294 DSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred Eecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 4444 5688998888532 11 3566655 356777764
No 479
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.42 E-value=45 Score=33.05 Aligned_cols=116 Identities=9% Similarity=0.173 Sum_probs=70.6
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeE----EeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNL----TLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDAR 340 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 340 (502)
..++|.++.|+++ ...||.--.+++|.+++....+... +-+..+..|....|.... -++..+..| +-+|-+.
T Consensus 65 d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 4569999999999 6699999999999999974333222 223345568899998764 344444333 5555544
Q ss_pred CCCC-ccceEeecCCeEEEEeCCCCCCEEEEEe-CCCeEEEEECCC
Q 010769 341 ISTH-SGFKWAVAADVESLAWDPHAEHSFVVSL-EDGTIKGFDIRT 384 (502)
Q Consensus 341 ~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~-~dg~i~i~d~~~ 384 (502)
.... ......+...|.-..|.+...-.+++.+ ..+++.=+-+++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 3222 2223355667777888887654444444 333333344433
No 480
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=28 Score=30.64 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=59.3
Q ss_pred CcEEEEEecC--CcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeE
Q 010769 279 RNILASASAD--KQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVE 356 (502)
Q Consensus 279 ~~~l~sgs~D--g~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 356 (502)
++++.+.+.- ..|++||+.+++.+.+-.-....+..=-...-+..+..-.-.+|....+|.++.+... .+...+.-.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-~~~y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-RFSYEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-ccccCCcce
Confidence 4567666553 3699999999988766543222222111112232444455668888889988776654 344445555
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEECCCC
Q 010769 357 SLAWDPHAEHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 357 ~v~~~p~~~~~l~~~~~dg~i~i~d~~~~ 385 (502)
.++-. +.+ ++.+....+++.-|..+.
T Consensus 135 gLt~d--~~~-LimsdGsatL~frdP~tf 160 (262)
T COG3823 135 GLTSD--DKN-LIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eeecC--Ccc-eEeeCCceEEEecCHHHh
Confidence 55443 343 555555666776666554
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.25 E-value=22 Score=39.80 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.9
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCC
Q 010769 413 NPLVPNLLATGSTDKMVKLWDLSNNQ 438 (502)
Q Consensus 413 sp~~~~~l~t~s~dg~i~vwd~~~~~ 438 (502)
++.+ ..++++..||.+.+||...++
T Consensus 243 ~~~~-~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDG-SHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCC-ceEEEEEecCCEEeeecCCCc
Confidence 6666 899999999999999998864
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=19 Score=36.17 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=53.2
Q ss_pred cccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCC
Q 010769 265 HTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTH 344 (502)
Q Consensus 265 h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 344 (502)
-.-.|..+..++.|. .++-.+.+|.+.++=.+..-.-..+......|+|-.+.-.. . |++.+
T Consensus 102 V~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~-~ftss--------------- 163 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-R-FFTSS--------------- 163 (741)
T ss_pred ceEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-e-eeccC---------------
Confidence 345688888999965 55566666766554333222223333333334444443222 2 22221
Q ss_pred ccceEeecCCeEEEEeCCCC--CCEEEEEeCCCeEEEEECCCC
Q 010769 345 SGFKWAVAADVESLAWDPHA--EHSFVVSLEDGTIKGFDIRTA 385 (502)
Q Consensus 345 ~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~dg~i~i~d~~~~ 385 (502)
..-.+..++|+|++ ...++.-+.|..|++|++...
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 01124456788875 456777777888888887765
No 483
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.50 E-value=5.4 Score=24.54 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCCCcEEEEEecCCcEEEEECCCCeeeEEecc
Q 010769 276 KEFRNILASASADKQVKIWDVAAGKCNLTLEH 307 (502)
Q Consensus 276 ~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~ 307 (502)
|+++.++++...+++|.++|+.+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 44454566666788999999998888877754
No 484
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.39 E-value=36 Score=38.27 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=83.1
Q ss_pred ecCCcEEEEECCCCeeeEEeccCCCCeEEEEEc-CCCC------cEEEEEECCCcEEEEeCCC----CCCcc----ceEe
Q 010769 286 SADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWN-HHSP------QILLSGSFDRSVVMKDARI----STHSG----FKWA 350 (502)
Q Consensus 286 s~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~------~~l~s~~~dg~i~vwd~~~----~~~~~----~~~~ 350 (502)
+.|+.+.+|+.+++.....+.+.+..|..+..- |.-+ ++++..+.--.|.++-+.- ..... ....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 568899999999987777777666667666542 2110 2233333334455543321 11111 1111
Q ss_pred e-cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCC---------CCC----CCCCccEEEe-cCCCCeeEEEEcCC
Q 010769 351 V-AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSD---------PDS----TSQQSSFTLH-AHDKAVCTISYNPL 415 (502)
Q Consensus 351 ~-~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~----~~~~~~~~~~-~h~~~v~~l~~sp~ 415 (502)
. +..|.|+....+|. .|+ ++.||.|+-+-....... ... .-...+..+. .+..+|..+.+...
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2 44588888665554 444 455664443222211110 000 0001122333 56779999999886
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 010769 416 VPNLLATGSTDKMVKLWDLSN 436 (502)
Q Consensus 416 ~~~~l~t~s~dg~i~vwd~~~ 436 (502)
. ++|.+-+..|+|.+|++..
T Consensus 254 R-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 R-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c-ceeeeeccCceEEEEEccC
Confidence 5 8999999999999999987
No 485
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=83.23 E-value=51 Score=36.83 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=86.1
Q ss_pred CcceeeeecCCCCCC--CCCCEEEEecC---------CCcEEEeeCCCC--CCCCceeeeCCcchhhhhhccccCCcccc
Q 010769 192 FPLCMAWLDCPLKDR--EKGNFMAVGSM---------EPAIEIWDLDVI--DEVQPHVILGGIDEEKKKKKSKKGKKSSI 258 (502)
Q Consensus 192 ~~~~~~w~~~~~~~s--~~~~~la~g~~---------dg~I~iwdl~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 258 (502)
.++++..+....... ....|||+|+. -|.+.|+++-.. +.-.|. .+.+-+
T Consensus 1027 ~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~-----------------t~~KlK 1089 (1366)
T KOG1896|consen 1027 HVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF-----------------TKNKLK 1089 (1366)
T ss_pred eeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc-----------------ccceee
Confidence 345555544333222 22568998864 288999987321 111110 111111
Q ss_pred ccccCCcccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEe
Q 010769 259 KYKKGSHTDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKD 338 (502)
Q Consensus 259 ~~~~~~h~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 338 (502)
.......+++|..++=-. + +|++|.. ..|.||+++...-+.-+..-.-++.-.....-. ++|+.|.--..|.+.-
T Consensus 1090 el~~eE~KGtVsavceV~--G-~l~~~~G-qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vk-nlIl~gDV~ksisfl~ 1164 (1366)
T KOG1896|consen 1090 ELYIEEQKGTVSAVCEVR--G-HLLSSQG-QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVK-NLILAGDVMKSISFLG 1164 (1366)
T ss_pred eeehhhcccceEEEEEec--c-EEEEccC-cEEEEEEeccCCcceeeEEeccceeEEehhhhh-hheehhhhhhceEEEE
Confidence 222233456777776432 3 4555443 579999994332211111111222222222223 5677777667777666
Q ss_pred CCCCCCccceEe---ecCCeEEEEeCCCCCC-EEEEEeCCCeEEEEECC
Q 010769 339 ARISTHSGFKWA---VAADVESLAWDPHAEH-SFVVSLEDGTIKGFDIR 383 (502)
Q Consensus 339 ~~~~~~~~~~~~---~~~~v~~v~~~p~~~~-~l~~~~~dg~i~i~d~~ 383 (502)
............ ..-.+.++.|--+|.+ .|+++..+++|++|-..
T Consensus 1165 fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1165 FQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 554332222221 1224667777665554 57788889999888654
No 486
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=83.11 E-value=38 Score=31.12 Aligned_cols=73 Identities=7% Similarity=0.038 Sum_probs=44.5
Q ss_pred CCCeeEEEEcC------CCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEE-EEcCCCCcEEEEEeCCCcEEE
Q 010769 404 DKAVCTISYNP------LVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSV-AFSEDSPFVLAIGGSKGKLEI 476 (502)
Q Consensus 404 ~~~v~~l~~sp------~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~llasg~~dg~i~v 476 (502)
...|+|++--. +....|+.|...|.|.|.|...........+..-...|... .|. ...|.|+.++.||.|++
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~d-evdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYD-EVDYRIVVACRDGKIYT 254 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeee-ccceEEEEEeCCCEEEE
Confidence 34577775432 34578999999999999998877633333333221111111 222 14456888899998876
Q ss_pred E
Q 010769 477 W 477 (502)
Q Consensus 477 w 477 (502)
-
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 487
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.92 E-value=47 Score=32.07 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=33.0
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEE-EecCCCCeeEEEEcCCCCCEEEEEeCCCcEE
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFT-LHAHDKAVCTISYNPLVPNLLATGSTDKMVK 430 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~ 430 (502)
+|++....+.|....+..... ...... +......+..+++.|+| .++++...+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~r~~~v~~~pDG-~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGS------VTEEEEFLGGFGGRPRDVAQGPDG-ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEE------EEEEEEECTTSSS-EEEEEEETTS-EEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCC------ccceEEccccCCCCceEEEEcCCC-eEEEEECCCCeEe
Confidence 555555567788777764410 001111 12344478999999998 7777766777764
No 488
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.12 E-value=3.7 Score=43.73 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=44.9
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeEEEEecCCCCCEEEEEEcC--------------CCCcEEEEEeCC
Q 010769 406 AVCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSCIASRNPKAGAVFSVAFSE--------------DSPFVLAIGGSK 471 (502)
Q Consensus 406 ~v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~sp--------------d~~~llasg~~d 471 (502)
.-..++.+|.| ++.|+...=|.|.+.|+.......+ ..+... .++.|-+ -..++++-+-..
T Consensus 323 ~ge~lslSP~g-tlAAVTD~lgRVlLlDta~~ivvr~--wKGYRD--Asc~fv~vkek~~~s~~~~sRvAlFLvIyAPRr 397 (1244)
T KOG2727|consen 323 KGEKLSLSPSG-TLAAVTDSLGRVLLLDTAALIVVRL--WKGYRD--ASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRR 397 (1244)
T ss_pred ccceeeeCCCc-cEEEEecccCcEEEEehhhhhHHHH--hccccc--ceeEEEEcccccCCCccCcCceeEEEEEecccc
Confidence 34567889987 7777777778888988866532111 111111 1122211 012344555667
Q ss_pred CcEEEEECCCCccccc
Q 010769 472 GKLEIWDTLSDAGISN 487 (502)
Q Consensus 472 g~i~vwd~~~~~~~~~ 487 (502)
|.+-||.+.+|..+..
T Consensus 398 giLEVW~~q~gpRV~A 413 (1244)
T KOG2727|consen 398 GILEVWQMQTGPRVLA 413 (1244)
T ss_pred cHHHHHHhccCCeEEE
Confidence 8888888888877643
No 489
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.28 E-value=57 Score=31.96 Aligned_cols=196 Identities=14% Similarity=0.131 Sum_probs=105.0
Q ss_pred CCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCc---ccceeeEEecCCCCcE-E
Q 010769 207 EKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSH---TDSVLGLAWNKEFRNI-L 282 (502)
Q Consensus 207 ~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~-l 282 (502)
|...+|+.....+-+.+||++... ++. ...+. -+-...+.+. ++.. |
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~--------------------------~~~Gr~NNVDvrygf~l~--g~~vDl 116 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS--------------------------LPVGRPNNVDVRYGFPLN--GKTVDL 116 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEE--------------------------E-SS-EEEEEEEEEEEET--TEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEe--------------------------ecCCCcceeeeecceecC--CceEEE
Confidence 456677777788899999997421 110 00111 1222333332 2222 4
Q ss_pred EEEec-C---CcEEEEECC--CCeeeEEecc-------CCCCeEEEEE--cC-CCCcEEEEEECCCcEEEEeCCCC-C--
Q 010769 283 ASASA-D---KQVKIWDVA--AGKCNLTLEH-------HTDKVQAVAW--NH-HSPQILLSGSFDRSVVMKDARIS-T-- 343 (502)
Q Consensus 283 ~sgs~-D---g~v~vwd~~--~~~~~~~~~~-------h~~~v~~l~~--~~-~~~~~l~s~~~dg~i~vwd~~~~-~-- 343 (502)
+.++. + .+|++|.+. ++. +..+.. ....+..+|+ ++ .+..+++....+|.+.-|-+... .
T Consensus 117 avas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~ 195 (381)
T PF02333_consen 117 AVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK 195 (381)
T ss_dssp EEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS
T ss_pred EEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc
Confidence 44443 2 469999775 343 333321 1123566665 34 34457778889999888877532 1
Q ss_pred C---ccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEec--CCCCeeEEEEc--CCC
Q 010769 344 H---SGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHA--HDKAVCTISYN--PLV 416 (502)
Q Consensus 344 ~---~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s--p~~ 416 (502)
. ....+...+.+..|....... .++++-++.-|.-|+........ ...+....+ ....|-.|++- +++
T Consensus 196 v~~~lVR~f~~~sQ~EGCVVDDe~g-~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g 270 (381)
T PF02333_consen 196 VSATLVREFKVGSQPEGCVVDDETG-RLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDG 270 (381)
T ss_dssp EEEEEEEEEE-SS-EEEEEEETTTT-EEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC
T ss_pred EeeEEEEEecCCCcceEEEEecccC-CEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCC
Confidence 1 223455677899999887654 79999999888888876442100 112222222 34567777764 344
Q ss_pred CCEEEEEe-CCCcEEEEECCCC
Q 010769 417 PNLLATGS-TDKMVKLWDLSNN 437 (502)
Q Consensus 417 ~~~l~t~s-~dg~i~vwd~~~~ 437 (502)
..+|++++ .+++..||+....
T Consensus 271 ~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 271 KGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp -EEEEEEEGGGTEEEEEESSTT
T ss_pred CeEEEEEcCCCCeEEEEecCCC
Confidence 45555555 4778999998753
No 490
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=47 Score=36.31 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEEEEEec
Q 010769 208 KGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNILASASA 287 (502)
Q Consensus 208 ~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~sgs~ 287 (502)
-|+.|.+|+.+|.+.+|.+.............. ....... -+..+|.-|...+. ..++ -...
T Consensus 25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~--------------~~~~~~~--~~kk~i~~l~~~~~-~~~l-l~l~ 86 (877)
T KOG2063|consen 25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTE--------------TVKFEKE--FSKKPINKLLVCAS-LELL-LILS 86 (877)
T ss_pred hCCEEEEEcCCCcEEEEeccccccccchhhhcc--------------hhHHhhh--hccchhHHHhhcch-hcch-heec
Confidence 489999999999999999864322111100000 0000001 12566777776665 2233 3345
Q ss_pred CCcEEEEECCCCee
Q 010769 288 DKQVKIWDVAAGKC 301 (502)
Q Consensus 288 Dg~v~vwd~~~~~~ 301 (502)
|+.|.++++.+-+.
T Consensus 87 dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 87 DSQIAVHKLPELEP 100 (877)
T ss_pred CCcceeeecCcccc
Confidence 67788888766544
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=81.07 E-value=55 Score=31.67 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=13.0
Q ss_pred cEEEEEECC-----------CcEEEEeCCCC
Q 010769 323 QILLSGSFD-----------RSVVMKDARIS 342 (502)
Q Consensus 323 ~~l~s~~~d-----------g~i~vwd~~~~ 342 (502)
.+.+.|+.. ..+..||..+.
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 677777763 24667787654
No 492
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.06 E-value=30 Score=34.12 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=12.9
Q ss_pred cEEEEEECCC-----------cEEEEeCCCC
Q 010769 323 QILLSGSFDR-----------SVVMKDARIS 342 (502)
Q Consensus 323 ~~l~s~~~dg-----------~i~vwd~~~~ 342 (502)
.+++.|+... .+..||..+.
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 6777777542 3667787653
No 493
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=80.98 E-value=59 Score=31.94 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=100.6
Q ss_pred EEEEECCCCeeeEEecc--CCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCE-
Q 010769 291 VKIWDVAAGKCNLTLEH--HTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHS- 367 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~- 367 (502)
|.|.| .....+..+++ ....|.++.|..+- -+++|--.-.-+.+.|+..++.+.......-+-.+--.+|-|.+.
T Consensus 408 vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~ 485 (603)
T COG4880 408 VYILD-ENLNVVGKLTGLAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL 485 (603)
T ss_pred eEEEc-CCCcEEEEEeccCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence 44444 33445555544 35688899998766 566666666678889999887766554444444444567766554
Q ss_pred EEEEeCCCe--EEEEECCCCCCCCCCCCCCccEEEecCCCC----eeEEEEcCCCCCEEEEEeCCCcEEEEECCCCCeeE
Q 010769 368 FVVSLEDGT--IKGFDIRTAKSDPDSTSQQSSFTLHAHDKA----VCTISYNPLVPNLLATGSTDKMVKLWDLSNNQPSC 441 (502)
Q Consensus 368 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~sp~~~~~l~t~s~dg~i~vwd~~~~~~~~ 441 (502)
+-+|..+|. |.+||+........ ....++..-=++ -..+.|.|...-+++-+...|. ++.+..+. .
T Consensus 486 lGvG~~~g~vKiSLFdiSdl~~PkE----v~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~--k 557 (603)
T COG4880 486 LGVGAYQGGVKISLFDISDLAAPKE----VSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGS--K 557 (603)
T ss_pred EEeecccCCceEEEEeccCCCCchh----hhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCc--e
Confidence 446666675 56788876532110 001111100001 1234455544334444555555 44444442 3
Q ss_pred EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 010769 442 IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAGISN 487 (502)
Q Consensus 442 ~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~~~~ 487 (502)
+.....|...+...-|..|- +...|+. .+.++|-.+.+.+..
T Consensus 558 l~k~~e~k~na~RA~fi~dy--lY~vg~~--ev~~ldenswe~Vge 599 (603)
T COG4880 558 LRKRAERKLNADRAFFIKDY--LYLVGGN--EVWKLDENSWEVVGE 599 (603)
T ss_pred eeehhhhcccceeeEEecce--EEEeccc--eeEEeccchHhhhhh
Confidence 44445566666667777664 4444544 477777666665543
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.85 E-value=26 Score=36.82 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCccceEeecCCeEEEEeCCCCCCEEEEEeCCCeEEEEEC
Q 010769 309 TDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHSGFKWAVAADVESLAWDPHAEHSFVVSLEDGTIKGFDI 382 (502)
Q Consensus 309 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~ 382 (502)
...++++.-+|.+ +.++.+..||.|++|+....+... .+....+-..+.|..+| +++.++|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFTNHG---LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeeeccc---eEEEeccchhheeec
Confidence 4567888889988 889999999999999986544322 33334445556665543 666666666666643
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.36 E-value=35 Score=34.20 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 010769 450 GAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLS 481 (502)
Q Consensus 450 ~~v~~~~~spd~~~llasg~~dg~i~vwd~~~ 481 (502)
..|.++...+..+ +|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 3488899988887 688899999999999975
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=78.23 E-value=1.2e+02 Score=33.71 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=91.0
Q ss_pred EEEEECCCCeeeEEeccCC----CCeEEEEEcCCCCc-EEEEEEC-----------CCcEEEEeCCCCCCccceEeecCC
Q 010769 291 VKIWDVAAGKCNLTLEHHT----DKVQAVAWNHHSPQ-ILLSGSF-----------DRSVVMKDARISTHSGFKWAVAAD 354 (502)
Q Consensus 291 v~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~-~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~ 354 (502)
|++.|..+++.+..+.... -.+..+.|+..+.. ++++|.. +|.++.|++-...... ...|...
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~l-ellh~T~ 933 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKL-ELLHKTE 933 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCcee-eeeeccC
Confidence 6777777666555543211 24556666655533 3333332 3446666654333211 1222222
Q ss_pred --eEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcEEE-
Q 010769 355 --VESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMVKL- 431 (502)
Q Consensus 355 --v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i~v- 431 (502)
-.-.+..|..+ .+++| ....+++||+...+. .....+......|+++++.- ..++.|..--.|.+
T Consensus 934 ~~~~v~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~l-------LRk~e~k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 934 IPGPVGAICPFQG-RVLAG-VGRFLRLYDLGKKKL-------LRKCELKFIPNRISSIQTYG---ARIVVGDIQESVHFV 1001 (1205)
T ss_pred CCccceEEeccCC-EEEEe-cccEEEEeeCChHHH-------HhhhhhccCceEEEEEeecc---eEEEEeeccceEEEE
Confidence 22245567655 45544 467899999987621 11112222456688887764 45666655444555
Q ss_pred -EECCCCCeeEEEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 010769 432 -WDLSNNQPSCIASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTL 480 (502)
Q Consensus 432 -wd~~~~~~~~~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~ 480 (502)
|+-..++. .++.-..-.-.|+++.+-..+. +|.|..=|++.+-.+-
T Consensus 1002 ~y~~~~n~l-~~fadD~~pR~Vt~~~~lD~~t--vagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1002 RYRREDNQL-IVFADDPVPRHVTALELLDYDT--VAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEecCCCeE-EEEeCCCccceeeEEEEecCCc--eeeccccCcEEEEECC
Confidence 44444442 2222233344577777766664 7766666777766553
No 497
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.06 E-value=62 Score=29.95 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=110.7
Q ss_pred CCCCCCCCEEEEecCCCcEEEeeCCCCCCCCceeeeCCcchhhhhhccccCCccccccccCCcccceeeEEecCCCCcEE
Q 010769 203 LKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDEEKKKKKSKKGKKSSIKYKKGSHTDSVLGLAWNKEFRNIL 282 (502)
Q Consensus 203 ~~~s~~~~~la~g~~dg~I~iwdl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l 282 (502)
++..++|..-.++...+.|--.|-.+++... ...+....-..|..-|++...+
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~---------------------------ypLg~Ga~Phgiv~gpdg~~Wi 119 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVET---------------------------YPLGSGASPHGIVVGPDGSAWI 119 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEE---------------------------EecCCCCCCceEEECCCCCeeE
Confidence 3346777777777666666655554432211 1112233345566677755443
Q ss_pred EEEecCCcEEEEECCCCeeeEEe----ccCCCCeEEEEEcCCCCcEEEEEECC---------CcEEEEeCCCCCCccceE
Q 010769 283 ASASADKQVKIWDVAAGKCNLTL----EHHTDKVQAVAWNHHSPQILLSGSFD---------RSVVMKDARISTHSGFKW 349 (502)
Q Consensus 283 ~sgs~Dg~v~vwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~ 349 (502)
.=++. -|.-.|-++... .+| ...........|.+.| ++-+++... +.|++|+.-
T Consensus 120 td~~~--aI~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaP--------- 186 (353)
T COG4257 120 TDTGL--AIGRLDPKTLEV-TRFPLPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAP--------- 186 (353)
T ss_pred ecCcc--eeEEecCcccce-EEeecccccCCCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccC---------
Confidence 32222 344455444432 222 3334567788899988 777776521 223333332
Q ss_pred eecCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCCCcE
Q 010769 350 AVAADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTDKMV 429 (502)
Q Consensus 350 ~~~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~dg~i 429 (502)
.......++..|+|+ +.+++.....|...|...... ..+-.-.........+..+|.+ +.-+|....+.+
T Consensus 187 -qG~gpyGi~atpdGs-vwyaslagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l 256 (353)
T COG4257 187 -QGGGPYGICATPDGS-VWYASLAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSL 256 (353)
T ss_pred -CCCCCcceEECCCCc-EEEEeccccceEEcccccCCc-------ceecCCCcccccccccccCccC-cEEEeccCCcee
Confidence 233456678889877 666666677777777666521 1111111212334555556666 666666667778
Q ss_pred EEEECCCCCeeEEEEecCCCCCEEEEEEcCCCC
Q 010769 430 KLWDLSNNQPSCIASRNPKAGAVFSVAFSEDSP 462 (502)
Q Consensus 430 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 462 (502)
..||..... -....+.+....-.++.....++
T Consensus 257 ~rfdPs~~s-W~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 257 HRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred eEeCccccc-ceeeeCCCCCCCcceeeeccCCc
Confidence 888776554 22334444334444555555544
No 498
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.99 E-value=12 Score=22.64 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=21.3
Q ss_pred ecCCCCeeEEEEcCCCCCEEEEEeCC--CcEEEE
Q 010769 401 HAHDKAVCTISYNPLVPNLLATGSTD--KMVKLW 432 (502)
Q Consensus 401 ~~h~~~v~~l~~sp~~~~~l~t~s~d--g~i~vw 432 (502)
......-....|+|+|..++.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455678889999996666666666 666665
No 499
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=76.90 E-value=54 Score=29.15 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=64.6
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEEEEeCC---C---cEEEE---ECC--
Q 010769 367 SFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLATGSTD---K---MVKLW---DLS-- 435 (502)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~t~s~d---g---~i~vw---d~~-- 435 (502)
.++++...+.|.+|++.+.. ..+..++..- +.|..+.++..| .+|+|-=.+ . .+|+| ...
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~-------~~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE-------CPLLCTFSTV-GRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC-------CceeEEEcch-hheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 45555777889999998442 2556666644 789999999998 888885432 2 45664 222
Q ss_pred CCCeeE---------------------EEEecCCCCCEEEEEEcCCCCcEEEEEeCCCcEEEEECCCCcc
Q 010769 436 NNQPSC---------------------IASRNPKAGAVFSVAFSEDSPFVLAIGGSKGKLEIWDTLSDAG 484 (502)
Q Consensus 436 ~~~~~~---------------------~~~~~~~~~~v~~~~~spd~~~llasg~~dg~i~vwd~~~~~~ 484 (502)
...+.. +..++. ..++.+++.+|-...+|+ | .++++.||.+.....
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlV-g-~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLV-G-CGNKLVLFTLKYQTI 167 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEE-E-cCCEEEEEEEEEEEE
Confidence 112211 111111 345778888885443444 4 455899998865443
No 500
>PRK13684 Ycf48-like protein; Provisional
Probab=76.38 E-value=76 Score=30.65 Aligned_cols=154 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred ccceeeEEecCCCCcEEEEEecCCcEEEEECCCCeeeEEeccCCCCeEEEEEcCCCCcEEEEEECCCcEEEEeCCCCCCc
Q 010769 266 TDSVLGLAWNKEFRNILASASADKQVKIWDVAAGKCNLTLEHHTDKVQAVAWNHHSPQILLSGSFDRSVVMKDARISTHS 345 (502)
Q Consensus 266 ~~~V~~l~~~~~~~~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 345 (502)
...+.++.+.|+ +.+++++..-...+.++-....-......-...++++.+.+++ .++..+..|.+++-....+..-
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~vg~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDG--NLWMLARGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCC-CeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCC--CEEEEecCCEEEEccCCCCCcc
Q ss_pred cceEee----cCCeEEEEeCCCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCCCccEEEecCCCCeeEEEEcCCCCCEEE
Q 010769 346 GFKWAV----AADVESLAWDPHAEHSFVVSLEDGTIKGFDIRTAKSDPDSTSQQSSFTLHAHDKAVCTISYNPLVPNLLA 421 (502)
Q Consensus 346 ~~~~~~----~~~v~~v~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 421 (502)
...... ...+..+.+.|.+. .++++.....++--|--.. ...+.....-......+.|.. +...+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~S~d~G~t--------W~~~~~~~~~~~~~~~~~~~~--~~~~~ 317 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLVSKDGGKT--------WEKDPVGEEVPSNFYKIVFLD--PEKGF 317 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEEeCCCCCC--------CeECCcCCCCCcceEEEEEeC--CCceE
Q ss_pred EEeCCCcEEEEE
Q 010769 422 TGSTDKMVKLWD 433 (502)
Q Consensus 422 t~s~dg~i~vwd 433 (502)
..+..|.|--|+
T Consensus 318 ~~G~~G~il~~~ 329 (334)
T PRK13684 318 VLGQRGVLLRYV 329 (334)
T ss_pred EECCCceEEEec
Done!