Query 010770
Match_columns 501
No_of_seqs 349 out of 2479
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 3.1E-48 6.7E-53 349.2 25.6 349 1-380 1-366 (392)
2 PLN02193 nitrile-specifier pro 100.0 7.3E-44 1.6E-48 371.0 37.5 304 2-324 151-467 (470)
3 PLN02153 epithiospecifier prot 100.0 3.8E-43 8.2E-48 352.8 36.6 312 3-324 8-338 (341)
4 KOG4441 Proteins containing BT 100.0 6.4E-42 1.4E-46 360.7 28.8 269 31-338 285-555 (571)
5 PLN02193 nitrile-specifier pro 100.0 6.8E-39 1.5E-43 333.8 36.6 290 20-337 111-418 (470)
6 PHA02713 hypothetical protein; 100.0 4.2E-39 9.1E-44 340.8 30.7 269 32-336 259-540 (557)
7 KOG0379 Kelch repeat-containin 100.0 3.6E-38 7.9E-43 327.4 32.8 408 11-497 52-472 (482)
8 KOG4441 Proteins containing BT 100.0 1E-38 2.2E-43 336.5 27.0 254 3-299 312-567 (571)
9 PLN02153 epithiospecifier prot 100.0 4.9E-37 1.1E-41 308.5 32.3 274 53-337 4-292 (341)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 4.8E-37 1E-41 309.5 31.8 278 15-323 3-344 (346)
11 PHA02713 hypothetical protein; 100.0 1.8E-37 4E-42 328.3 26.4 242 3-286 283-544 (557)
12 KOG4152 Host cell transcriptio 100.0 1.5E-37 3.2E-42 301.8 21.3 343 1-373 16-400 (830)
13 PRK14131 N-acetylneuraminic ac 100.0 2.4E-36 5.1E-41 306.9 30.8 282 15-325 24-368 (376)
14 TIGR03548 mutarot_permut cycli 100.0 2.5E-36 5.4E-41 301.2 29.3 271 18-312 2-314 (323)
15 KOG4693 Uncharacterized conser 100.0 6E-37 1.3E-41 276.3 19.7 241 2-255 54-313 (392)
16 PHA03098 kelch-like protein; P 100.0 4.3E-34 9.4E-39 304.4 29.5 267 32-337 252-519 (534)
17 PHA03098 kelch-like protein; P 100.0 4.8E-34 1E-38 304.1 28.3 235 20-285 285-521 (534)
18 KOG0379 Kelch repeat-containin 100.0 7.7E-34 1.7E-38 295.1 26.2 248 72-336 56-308 (482)
19 PHA02790 Kelch-like protein; P 100.0 1.8E-32 4E-37 286.3 27.5 214 23-283 264-478 (480)
20 KOG1230 Protein containing rep 100.0 7E-33 1.5E-37 263.8 20.2 255 15-284 62-349 (521)
21 TIGR03548 mutarot_permut cycli 100.0 3.5E-32 7.6E-37 271.3 24.9 233 3-257 52-316 (323)
22 TIGR03547 muta_rot_YjhT mutatr 100.0 3.1E-31 6.6E-36 267.2 27.0 241 2-273 41-344 (346)
23 PRK14131 N-acetylneuraminic ac 100.0 4E-31 8.7E-36 268.6 27.6 248 3-281 63-374 (376)
24 PHA02790 Kelch-like protein; P 100.0 2.1E-31 4.5E-36 278.4 25.4 211 82-336 267-477 (480)
25 KOG1230 Protein containing rep 100.0 4.5E-31 9.8E-36 251.5 19.9 256 72-336 62-347 (521)
26 KOG4152 Host cell transcriptio 100.0 2.2E-29 4.7E-34 245.1 15.7 242 55-311 16-274 (830)
27 KOG2437 Muskelin [Signal trans 100.0 1E-30 2.3E-35 253.9 3.8 393 2-426 239-697 (723)
28 COG3055 Uncharacterized protei 99.8 1.5E-16 3.2E-21 150.9 22.8 277 15-321 32-370 (381)
29 COG3055 Uncharacterized protei 99.7 8.3E-16 1.8E-20 145.9 19.5 243 2-276 70-375 (381)
30 KOG2437 Muskelin [Signal trans 99.6 5.5E-16 1.2E-20 151.9 5.5 203 110-317 237-463 (723)
31 PF13964 Kelch_6: Kelch motif 99.2 8.2E-11 1.8E-15 82.8 6.1 49 76-127 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.1 2.7E-10 5.8E-15 80.1 6.3 49 19-77 1-50 (50)
33 PLN02772 guanylate kinase 99.0 4.3E-09 9.3E-14 104.5 11.6 89 73-163 21-110 (398)
34 PF13415 Kelch_3: Galactose ox 98.9 3.8E-09 8.2E-14 73.8 5.9 47 86-135 1-49 (49)
35 PF01344 Kelch_1: Kelch motif; 98.9 3.6E-09 7.8E-14 73.3 5.4 44 76-119 1-45 (47)
36 PF13418 Kelch_4: Galactose ox 98.9 3.4E-09 7.3E-14 74.1 4.5 44 19-62 1-45 (49)
37 PF13415 Kelch_3: Galactose ox 98.8 6.7E-09 1.4E-13 72.6 5.9 46 138-186 2-49 (49)
38 PF07646 Kelch_2: Kelch motif; 98.8 1E-08 2.3E-13 71.6 6.2 44 76-119 1-47 (49)
39 PLN02772 guanylate kinase 98.8 3.8E-08 8.1E-13 97.8 10.5 92 173-279 20-112 (398)
40 PF13418 Kelch_4: Galactose ox 98.8 7.6E-09 1.6E-13 72.3 4.0 47 126-175 1-48 (49)
41 PF07646 Kelch_2: Kelch motif; 98.7 3.3E-08 7.3E-13 69.0 5.9 44 19-63 1-47 (49)
42 PF01344 Kelch_1: Kelch motif; 98.7 2.9E-08 6.3E-13 68.6 4.5 43 126-169 1-44 (47)
43 PF13854 Kelch_5: Kelch motif 98.6 7.2E-08 1.6E-12 64.8 5.3 40 16-56 1-42 (42)
44 PF13854 Kelch_5: Kelch motif 98.6 7.9E-08 1.7E-12 64.6 5.4 40 73-112 1-42 (42)
45 PF07250 Glyoxal_oxid_N: Glyox 98.6 7E-06 1.5E-10 77.1 18.3 151 104-287 48-210 (243)
46 smart00612 Kelch Kelch domain. 98.5 1.4E-07 3.1E-12 64.9 4.9 47 139-188 1-47 (47)
47 PF03089 RAG2: Recombination a 98.5 5.2E-06 1.1E-10 77.3 14.7 133 7-149 75-231 (337)
48 smart00612 Kelch Kelch domain. 98.5 2.4E-07 5.1E-12 63.8 4.5 47 32-87 1-47 (47)
49 PF03089 RAG2: Recombination a 98.3 0.00056 1.2E-08 64.1 24.1 127 72-199 18-176 (337)
50 TIGR01640 F_box_assoc_1 F-box 98.3 0.00027 5.9E-09 66.8 22.7 201 46-277 14-230 (230)
51 PF07250 Glyoxal_oxid_N: Glyox 98.3 5.3E-05 1.1E-09 71.3 16.3 147 48-226 48-206 (243)
52 TIGR01640 F_box_assoc_1 F-box 98.0 0.0018 4E-08 61.1 21.1 191 102-309 14-215 (230)
53 PRK11138 outer membrane biogen 97.0 0.41 8.8E-06 49.1 25.5 219 27-308 66-301 (394)
54 PRK11138 outer membrane biogen 96.8 0.49 1.1E-05 48.5 23.8 208 28-308 118-342 (394)
55 TIGR03300 assembly_YfgL outer 96.6 0.77 1.7E-05 46.6 23.2 197 46-308 155-368 (377)
56 PF07893 DUF1668: Protein of u 96.4 0.16 3.5E-06 50.9 16.5 120 27-169 73-215 (342)
57 PF12768 Rax2: Cortical protei 96.3 0.049 1.1E-06 52.7 11.7 112 44-169 14-129 (281)
58 PF13360 PQQ_2: PQQ-like domai 96.2 1.1 2.4E-05 41.9 24.6 185 26-278 32-233 (238)
59 KOG2055 WD40 repeat protein [G 96.1 0.34 7.3E-06 48.8 16.0 160 24-222 218-378 (514)
60 PF07893 DUF1668: Protein of u 95.8 0.27 5.8E-06 49.4 14.5 128 136-287 75-219 (342)
61 PF12768 Rax2: Cortical protei 95.7 0.12 2.6E-06 50.1 11.4 113 100-227 14-130 (281)
62 TIGR03300 assembly_YfgL outer 95.4 3.6 7.7E-05 41.8 25.9 208 29-308 64-286 (377)
63 cd00094 HX Hemopexin-like repe 95.2 1.1 2.3E-05 41.0 15.5 152 81-278 11-178 (194)
64 PRK13684 Ycf48-like protein; P 95.0 4.3 9.3E-05 40.6 20.2 181 25-254 137-323 (334)
65 TIGR02800 propeller_TolB tol-p 94.9 5.2 0.00011 41.1 23.3 147 102-284 214-363 (417)
66 cd00094 HX Hemopexin-like repe 94.5 3.2 7E-05 37.9 16.5 154 25-221 12-178 (194)
67 PRK00178 tolB translocation pr 94.5 7 0.00015 40.4 23.0 146 102-284 223-372 (430)
68 PRK04792 tolB translocation pr 94.1 8.5 0.00018 40.2 20.8 146 46-226 242-390 (448)
69 PRK04922 tolB translocation pr 94.1 8.4 0.00018 40.0 20.8 188 45-282 227-418 (433)
70 TIGR02800 propeller_TolB tol-p 93.8 9.1 0.0002 39.3 21.0 146 46-226 214-362 (417)
71 PRK05137 tolB translocation pr 93.7 10 0.00022 39.4 24.9 191 45-284 181-375 (435)
72 PF05096 Glu_cyclase_2: Glutam 93.6 0.91 2E-05 43.2 11.1 109 134-278 52-160 (264)
73 PRK05137 tolB translocation pr 93.5 11 0.00024 39.2 21.7 194 46-284 226-421 (435)
74 PRK04792 tolB translocation pr 93.4 11 0.00025 39.2 23.6 147 102-284 242-391 (448)
75 PRK13684 Ycf48-like protein; P 93.4 9.4 0.0002 38.2 23.3 176 86-309 142-321 (334)
76 PF08268 FBA_3: F-box associat 93.1 1.3 2.9E-05 37.4 10.5 84 137-226 5-88 (129)
77 PF08450 SGL: SMP-30/Gluconola 92.9 8.4 0.00018 36.4 22.3 200 30-284 11-222 (246)
78 PRK00178 tolB translocation pr 92.8 14 0.00029 38.3 21.1 146 45-226 222-371 (430)
79 KOG2055 WD40 repeat protein [G 92.4 2.5 5.4E-05 42.8 12.6 159 136-336 223-385 (514)
80 PF02897 Peptidase_S9_N: Proly 92.4 8.1 0.00018 39.7 17.4 206 30-275 134-357 (414)
81 PF05096 Glu_cyclase_2: Glutam 92.1 4.1 8.8E-05 38.9 13.2 157 29-225 54-210 (264)
82 TIGR03866 PQQ_ABC_repeats PQQ- 91.6 13 0.00028 35.5 20.8 103 32-164 2-106 (300)
83 PRK03629 tolB translocation pr 91.5 19 0.00041 37.3 24.2 169 102-312 223-395 (429)
84 PF13360 PQQ_2: PQQ-like domai 91.2 13 0.00027 34.6 26.8 195 47-308 4-219 (238)
85 cd00200 WD40 WD40 domain, foun 91.0 13 0.00028 34.4 23.4 110 29-166 19-128 (289)
86 cd00200 WD40 WD40 domain, foun 90.8 14 0.0003 34.3 24.0 64 87-164 105-168 (289)
87 PRK04922 tolB translocation pr 90.5 24 0.00052 36.6 24.1 147 102-284 228-377 (433)
88 PF02897 Peptidase_S9_N: Proly 90.2 16 0.00035 37.5 16.9 191 86-309 134-344 (414)
89 KOG0310 Conserved WD40 repeat- 89.5 27 0.00059 35.8 18.7 216 29-313 78-302 (487)
90 PF14870 PSII_BNR: Photosynthe 89.2 24 0.00051 34.7 18.8 195 3-253 92-295 (302)
91 PF08450 SGL: SMP-30/Gluconola 88.5 22 0.00048 33.5 20.6 164 29-226 50-221 (246)
92 PF02191 OLF: Olfactomedin-lik 88.5 23 0.0005 33.7 16.9 157 73-251 65-237 (250)
93 PF14870 PSII_BNR: Photosynthe 88.4 27 0.00059 34.3 22.0 240 3-311 7-253 (302)
94 PF09910 DUF2139: Uncharacteri 88.0 27 0.00058 33.9 19.2 160 17-193 30-219 (339)
95 KOG0310 Conserved WD40 repeat- 87.5 6.2 0.00013 40.3 10.8 119 129-280 71-190 (487)
96 PRK04043 tolB translocation pr 87.4 39 0.00084 35.0 20.2 152 102-285 213-367 (419)
97 PRK03629 tolB translocation pr 87.2 40 0.00086 35.0 21.3 190 46-283 223-414 (429)
98 PF03178 CPSF_A: CPSF A subuni 87.0 18 0.00038 35.8 14.1 123 153-309 62-191 (321)
99 PF12217 End_beta_propel: Cata 86.3 31 0.00066 32.7 21.8 258 41-312 39-335 (367)
100 TIGR03866 PQQ_ABC_repeats PQQ- 86.0 32 0.0007 32.7 24.6 106 31-165 43-149 (300)
101 PLN00033 photosystem II stabil 85.8 45 0.00097 34.2 20.8 111 113-252 271-389 (398)
102 PLN00181 protein SPA1-RELATED; 85.2 72 0.0016 36.0 21.9 64 87-164 545-609 (793)
103 PF10282 Lactonase: Lactonase, 84.8 26 0.00057 35.1 14.3 171 22-226 146-332 (345)
104 PRK02889 tolB translocation pr 84.6 53 0.0012 34.0 22.2 148 102-284 220-369 (427)
105 PRK11028 6-phosphogluconolacto 84.0 46 0.001 32.8 24.8 107 31-163 47-158 (330)
106 PRK11028 6-phosphogluconolacto 83.1 50 0.0011 32.6 23.7 104 32-162 3-111 (330)
107 PF10282 Lactonase: Lactonase, 83.1 53 0.0011 32.8 21.4 220 48-308 17-263 (345)
108 COG4946 Uncharacterized protei 82.0 67 0.0014 33.2 17.2 186 99-328 104-298 (668)
109 TIGR03075 PQQ_enz_alc_DH PQQ-d 80.8 84 0.0018 33.6 26.1 124 30-169 69-199 (527)
110 PF02191 OLF: Olfactomedin-lik 80.5 54 0.0012 31.2 17.0 138 44-194 87-237 (250)
111 PF09910 DUF2139: Uncharacteri 80.4 59 0.0013 31.6 17.7 132 101-250 77-219 (339)
112 PF08268 FBA_3: F-box associat 79.3 28 0.00061 29.2 10.4 84 84-169 3-88 (129)
113 PRK04043 tolB translocation pr 77.4 93 0.002 32.2 22.0 192 46-283 213-408 (419)
114 PRK02889 tolB translocation pr 76.0 1E+02 0.0022 31.9 20.9 145 46-226 220-368 (427)
115 PRK01742 tolB translocation pr 74.8 1.1E+02 0.0024 31.7 22.0 60 102-169 228-288 (429)
116 COG4946 Uncharacterized protei 72.1 1.3E+02 0.0028 31.3 16.6 196 28-284 234-440 (668)
117 PF14583 Pectate_lyase22: Olig 70.6 81 0.0018 32.0 12.3 240 26-311 42-303 (386)
118 PTZ00421 coronin; Provisional 69.6 1.6E+02 0.0034 31.3 20.6 64 87-164 138-201 (493)
119 cd00216 PQQ_DH Dehydrogenases 69.4 1.6E+02 0.0034 31.2 22.2 121 30-169 61-193 (488)
120 KOG0281 Beta-TrCP (transducin 68.2 29 0.00064 34.2 8.3 94 212-330 342-435 (499)
121 COG4257 Vgb Streptogramin lyas 68.1 1.2E+02 0.0026 29.3 18.2 183 47-284 125-314 (353)
122 PLN00033 photosystem II stabil 65.1 1.7E+02 0.0037 30.0 26.2 134 2-168 75-214 (398)
123 TIGR03075 PQQ_enz_alc_DH PQQ-d 64.9 2E+02 0.0043 30.8 19.0 97 82-193 65-171 (527)
124 cd00216 PQQ_DH Dehydrogenases 64.5 1.9E+02 0.0042 30.5 24.5 74 31-117 111-192 (488)
125 PF03178 CPSF_A: CPSF A subuni 64.3 1.5E+02 0.0032 29.2 13.1 120 46-194 62-190 (321)
126 PF02239 Cytochrom_D1: Cytochr 64.2 1.7E+02 0.0037 29.7 14.5 97 45-167 15-114 (369)
127 smart00284 OLF Olfactomedin-li 62.9 1.4E+02 0.0031 28.4 17.4 157 73-251 70-242 (255)
128 PF12217 End_beta_propel: Cata 62.6 1.5E+02 0.0032 28.4 16.6 224 23-254 78-334 (367)
129 KOG2321 WD40 repeat protein [G 62.6 71 0.0015 33.8 10.2 124 17-167 131-264 (703)
130 KOG0649 WD40 repeat protein [G 62.2 1.4E+02 0.0031 28.2 14.6 149 14-194 110-263 (325)
131 KOG2048 WD40 repeat protein [G 61.9 2.4E+02 0.0051 30.6 19.2 87 173-284 423-514 (691)
132 PRK10115 protease 2; Provision 60.5 2.7E+02 0.006 30.9 23.2 217 24-285 176-404 (686)
133 smart00284 OLF Olfactomedin-li 58.1 1.8E+02 0.0038 27.9 16.8 163 16-194 70-242 (255)
134 PF02239 Cytochrom_D1: Cytochr 58.0 2.2E+02 0.0047 28.9 13.2 203 45-277 99-304 (369)
135 KOG0807 Carbon-nitrogen hydrol 56.4 11 0.00025 35.1 3.1 65 431-498 63-129 (295)
136 PF09826 Beta_propel: Beta pro 54.8 3E+02 0.0064 29.5 19.6 174 139-329 173-359 (521)
137 PF13088 BNR_2: BNR repeat-lik 54.2 2E+02 0.0043 27.3 12.6 156 26-192 114-275 (275)
138 PRK01742 tolB translocation pr 53.4 2.7E+02 0.0059 28.7 19.7 101 46-167 228-330 (429)
139 PRK10115 protease 2; Provision 47.6 4.4E+02 0.0095 29.3 21.8 211 30-283 137-354 (686)
140 COG1520 FOG: WD40-like repeat 46.9 3.1E+02 0.0068 27.5 22.5 133 27-193 65-203 (370)
141 COG4257 Vgb Streptogramin lyas 45.6 2.9E+02 0.0064 26.8 15.2 152 86-283 72-226 (353)
142 PLN00181 protein SPA1-RELATED; 41.4 5.7E+02 0.012 28.9 23.2 61 86-163 587-650 (793)
143 KOG0649 WD40 repeat protein [G 41.2 3.2E+02 0.0069 25.9 14.1 156 113-308 100-263 (325)
144 COG1520 FOG: WD40-like repeat 40.3 4E+02 0.0086 26.7 22.6 98 47-167 122-225 (370)
145 PTZ00420 coronin; Provisional 39.5 5.3E+02 0.011 27.9 16.7 61 88-164 139-200 (568)
146 COG4880 Secreted protein conta 39.3 4.5E+02 0.0098 27.1 12.5 92 42-148 402-493 (603)
147 KOG0316 Conserved WD40 repeat- 39.0 3.4E+02 0.0074 25.6 14.1 94 46-164 81-176 (307)
148 TIGR02658 TTQ_MADH_Hv methylam 38.8 4.3E+02 0.0092 26.7 21.8 89 16-116 43-142 (352)
149 KOG0289 mRNA splicing factor [ 38.6 4.6E+02 0.01 27.0 15.0 34 126-164 347-380 (506)
150 KOG2321 WD40 repeat protein [G 36.5 5.7E+02 0.012 27.4 14.1 62 126-198 133-197 (703)
151 PF14583 Pectate_lyase22: Olig 35.3 2.3E+02 0.0051 28.8 8.9 111 22-147 191-303 (386)
152 PF05567 Neisseria_PilC: Neiss 35.3 4.7E+02 0.01 26.1 11.7 22 31-54 95-116 (335)
153 PF10820 DUF2543: Protein of u 35.2 5.5 0.00012 29.1 -1.8 59 433-496 21-79 (81)
154 TIGR03074 PQQ_membr_DH membran 34.9 7.1E+02 0.015 28.1 15.7 153 26-220 191-387 (764)
155 PF13540 RCC1_2: Regulator of 34.6 52 0.0011 19.7 2.7 19 20-38 7-25 (30)
156 PLN02919 haloacid dehalogenase 34.0 8.5E+02 0.018 28.7 26.5 217 23-278 627-891 (1057)
157 KOG0289 mRNA splicing factor [ 32.9 5.7E+02 0.012 26.4 13.9 58 104-170 413-471 (506)
158 KOG4649 PQQ (pyrrolo-quinoline 32.0 4.7E+02 0.01 25.2 13.8 107 25-164 16-126 (354)
159 PTZ00421 coronin; Provisional 31.3 6.6E+02 0.014 26.6 17.9 108 32-163 139-247 (493)
160 KOG0318 WD40 repeat stress pro 30.8 6.7E+02 0.015 26.6 14.1 136 136-313 453-595 (603)
161 PF06433 Me-amine-dh_H: Methyl 29.8 3.7E+02 0.0081 26.9 9.1 242 14-278 31-280 (342)
162 PF13088 BNR_2: BNR repeat-lik 29.2 4.9E+02 0.011 24.5 18.9 228 55-306 29-275 (275)
163 KOG0646 WD40 repeat protein [G 28.5 6.9E+02 0.015 26.0 15.4 213 23-278 85-310 (476)
164 PF13570 PQQ_3: PQQ-like domai 28.2 1.3E+02 0.0028 19.0 4.0 25 81-111 16-40 (40)
165 COG0823 TolB Periplasmic compo 28.2 6.9E+02 0.015 25.9 11.4 107 44-170 260-368 (425)
166 COG3823 Glutamine cyclotransfe 27.6 5.1E+02 0.011 24.1 11.1 163 123-308 41-247 (262)
167 KOG2048 WD40 repeat protein [G 27.1 8.5E+02 0.018 26.6 16.5 156 86-284 393-560 (691)
168 PF07734 FBA_1: F-box associat 26.5 4.3E+02 0.0093 22.9 9.5 82 83-169 2-91 (164)
169 PRK01029 tolB translocation pr 24.6 7.9E+02 0.017 25.3 19.7 61 210-284 351-412 (428)
170 TIGR02658 TTQ_MADH_Hv methylam 22.6 8E+02 0.017 24.7 26.1 120 31-167 13-142 (352)
171 KOG0278 Serine/threonine kinas 22.4 6.9E+02 0.015 23.9 11.1 68 230-313 222-290 (334)
172 COG0823 TolB Periplasmic compo 21.7 9.1E+02 0.02 25.0 12.9 107 152-285 261-369 (425)
173 KOG0296 Angio-associated migra 21.4 8.5E+02 0.018 24.5 14.0 109 30-168 75-185 (399)
174 KOG0291 WD40-repeat-containing 20.6 1.2E+03 0.026 26.0 17.3 184 24-250 355-547 (893)
175 COG2706 3-carboxymuconate cycl 20.1 8.8E+02 0.019 24.2 18.3 208 4-236 125-341 (346)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.1e-48 Score=349.16 Aligned_cols=349 Identities=23% Similarity=0.358 Sum_probs=291.4
Q ss_pred CcceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCCCc-----cCCceEEEEcCCCcEEeceecC--C--CCCCC
Q 010770 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKR-----FLSDVVVYDIDNKLWFQPECTG--N--GSNGQ 71 (501)
Q Consensus 1 ~~~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~~~-----~~~~v~~yd~~t~~W~~l~~~~--~--~~~~~ 71 (501)
|+.|+---. . -..|.+|+++.++ ++||.|||+..+. ..-|+.++|..+-+|+++++.- . ...-+
T Consensus 1 m~~WTVHLe---G---GPrRVNHAavaVG-~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp 73 (392)
T KOG4693|consen 1 MATWTVHLE---G---GPRRVNHAAVAVG-SRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYP 73 (392)
T ss_pred CceEEEEec---C---Ccccccceeeeec-ceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCC
Confidence 677876543 2 2579999999999 7999999986543 3458999999999999988621 1 11234
Q ss_pred CCCCCcceeEEEEeCCEEEEEccccC-CCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCC--
Q 010770 72 VGPGPRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG-- 148 (501)
Q Consensus 72 ~~p~~R~~h~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-- 148 (501)
..|-.|++|+.+.+++++||+||+++ ....|-+++||+++++|.+....+-.|.+|.+|++|++++ .+|||||+..
T Consensus 74 ~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a 152 (392)
T KOG4693|consen 74 AVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDA 152 (392)
T ss_pred ccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECc-EEEEecChHHHH
Confidence 55778999999999999999999987 6678899999999999999988889999999999999987 9999999864
Q ss_pred CcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCc---ccccccccccccccCCCCceEEe
Q 010770 149 KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI---MGDLWALKGLIEEENETPGWTQL 225 (501)
Q Consensus 149 ~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~---~~d~~~l~~~~~Yd~~t~~W~~~ 225 (501)
..+.++++++|..|.+|+.+.+.|..|.-|..|+++++++.+|||||+...... .++.| .+.+..+|..|..|+..
T Consensus 153 ~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Y-c~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 153 QRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQY-CDTIMALDLATGAWTRT 231 (392)
T ss_pred HhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhh-cceeEEEeccccccccC
Confidence 467899999999999999999999999999999999999999999998764322 22333 36677889999999999
Q ss_pred ecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEE
Q 010770 226 KLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYL 305 (501)
Q Consensus 226 ~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iy 305 (501)
+..+-.|..|..|++.++++++|+|||+++.- +.-++++|.|||.+..|+.+...+..|++|..++++++++++|
T Consensus 232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l-----n~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~ 306 (392)
T KOG4693|consen 232 PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL-----NVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY 306 (392)
T ss_pred CCCCcCCCcccccceEEEcceEEEecccchhh-----hhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE
Confidence 87778899999999999999999999998632 5678999999999999999999999999999999999999999
Q ss_pred EEccCCCCC--ccCcEEEecCCCCccccceecCCCCCCCCCCcccccccccceeeccccccchhhhhhhhhcCceec
Q 010770 306 LFGGFDGKS--TFGDIWWLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVS 380 (501)
Q Consensus 306 v~GG~~~~~--~~~d~w~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 380 (501)
+|||..... .++. ++.--..++..+.+.+.+++ |++.|++++++.+.+|+.+++++.+
T Consensus 307 LFGGTsP~~~~~~Sp-----------t~~~G~~~~~~LiD~SDLHv------LDF~PsLKTLa~~~Vl~~~ldqs~L 366 (392)
T KOG4693|consen 307 LFGGTSPLPCHPLSP-----------TNYNGMISPSGLIDLSDLHV------LDFAPSLKTLAMQSVLMFELDQSEL 366 (392)
T ss_pred EecCCCCCCCCCCCc-----------cccCCCCCccccccccccee------eecChhHHHHHHHHHHHHhhhhhhc
Confidence 999976522 1111 11111334456677777777 9999999999999999999988776
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.3e-44 Score=371.04 Aligned_cols=304 Identities=24% Similarity=0.428 Sum_probs=250.4
Q ss_pred cceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCC-C-ccCCceEEEEcCCCcEEeceecCCCCCCCCCCC-Ccc
Q 010770 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD-K-RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRA 78 (501)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~-~-~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~-~R~ 78 (501)
-+|.++++ .+.+|.+|.+|++++++ ++||||||... + ...+++|+||+.+++|..++..+ ..|. +|.
T Consensus 151 ~~W~~~~~---~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g------~~P~~~~~ 220 (470)
T PLN02193 151 GKWIKVEQ---KGEGPGLRCSHGIAQVG-NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG------DVPHLSCL 220 (470)
T ss_pred ceEEEccc---CCCCCCCccccEEEEEC-CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC------CCCCCccc
Confidence 37999875 55689999999999998 79999999853 2 24478999999999999876432 1343 467
Q ss_pred eeEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEE
Q 010770 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (501)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 158 (501)
+|++++++++||||||......++++|+||+.+++|+++++.+..|.+|..|++++.++ +|||+||.+.....+++++|
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~~~~~~~~~~~~y 299 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGVSATARLKTLDSY 299 (470)
T ss_pred ceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECC-EEEEECCCCCCCCcceEEEE
Confidence 89999999999999999877788999999999999999987555689999999988855 99999999877778999999
Q ss_pred ECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceee
Q 010770 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH 238 (501)
Q Consensus 159 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~ 238 (501)
|+.+++|+.++..+.+|.+|.+|++++++++||++||.... .++.+++||+.+++|+.+...+..|.+|..|
T Consensus 300 d~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 300 NIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--------ccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 99999999998766788999999999999999999997542 1477888899999999998777789999999
Q ss_pred EEEEeCCEEEEEcCCCCCCC--CcccccccCeEEEEEcCCCceEEcccCC---CCCCcccceEEE--EE-C-CEEEEEcc
Q 010770 239 TITSGGHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLSAQWKRLPIGN---EPPPARAYHSMT--CL-G-SLYLLFGG 309 (501)
Q Consensus 239 s~~~~~~~i~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~~~~---~~p~~r~~~~~~--~~-~-~~iyv~GG 309 (501)
+++..+++||||||...... ........+++|+||+.+++|+.+...+ .+|.+|..|+++ .+ + +.+++|||
T Consensus 372 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG 451 (470)
T PLN02193 372 ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGG 451 (470)
T ss_pred EEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcC
Confidence 99999999999999764211 0111246789999999999999998654 357788777543 23 3 45999999
Q ss_pred CCC-CCccCcEEEecC
Q 010770 310 FDG-KSTFGDIWWLVP 324 (501)
Q Consensus 310 ~~~-~~~~~d~w~~~~ 324 (501)
..+ +..++|+|.|..
T Consensus 452 ~~~~~~~~~D~~~~~~ 467 (470)
T PLN02193 452 KAPTNDRFDDLFFYGI 467 (470)
T ss_pred CCCccccccceEEEec
Confidence 975 457999998854
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.8e-43 Score=352.78 Aligned_cols=312 Identities=23% Similarity=0.394 Sum_probs=242.1
Q ss_pred ceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCC--CccCCceEEEEcCCCcEEeceecCCCCCCCCCCC-Ccce
Q 010770 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD--KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRAF 79 (501)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~-~R~~ 79 (501)
.|.++.+. .+.+|.+|.+|++++++ ++|||+||... ....+++++||+.+++|..++..+. .|. .+.+
T Consensus 8 ~W~~~~~~--~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~------~p~~~~~~ 78 (341)
T PLN02153 8 GWIKVEQK--GGKGPGPRCSHGIAVVG-DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD------VPRISCLG 78 (341)
T ss_pred eEEEecCC--CCCCCCCCCcceEEEEC-CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC------CCCCccCc
Confidence 69988752 24579999999999998 79999999853 2346899999999999998764321 232 2457
Q ss_pred eEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecC--CCCCCcCCccEEEEEcCcEEEEEecCCCCc------c
Q 010770 80 HIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSF--GDLPSPRDFAAASAIGNRKIVMYGGWDGKK------W 151 (501)
Q Consensus 80 h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~------~ 151 (501)
|++++++++||+|||......++++++||+.+++|+.+++. ...|.+|..|++++.++ +|||+||.+... .
T Consensus 79 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~ 157 (341)
T PLN02153 79 VRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGVSKGGLMKTPER 157 (341)
T ss_pred eEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECC-EEEEECCccCCCccCCCcc
Confidence 88999999999999998777789999999999999998752 12388999999988855 999999986432 4
Q ss_pred cccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCc-ccccccccccccccCCCCceEEeecCCC
Q 010770 152 LSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI-MGDLWALKGLIEEENETPGWTQLKLPGQ 230 (501)
Q Consensus 152 ~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~d~~~l~~~~~Yd~~t~~W~~~~~~g~ 230 (501)
++++++||+.+++|+.++..+..|.+|.+|++++++++|||+||....... -.+.+.++.+++||+.+++|+.+...+.
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 578999999999999998655567899999999999999999997532000 0011235778899999999999987777
Q ss_pred CCCCceeeEEEEeCCEEEEEcCCCCCCC--CcccccccCeEEEEEcCCCceEEcccCCCCCCcccc--eEEEE-E-CCEE
Q 010770 231 APSSRCGHTITSGGHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAY--HSMTC-L-GSLY 304 (501)
Q Consensus 231 ~p~~r~~~s~~~~~~~i~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~--~~~~~-~-~~~i 304 (501)
+|.+|..|++++.+++||||||...... ........+++|+||+.+++|+.+.....+|.||.. ++++. . +++|
T Consensus 238 ~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~ 317 (341)
T PLN02153 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGL 317 (341)
T ss_pred CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceE
Confidence 8999999999999999999999742110 001134568999999999999999865555545533 34443 3 3589
Q ss_pred EEEccCCCC-CccCcEEEecC
Q 010770 305 LLFGGFDGK-STFGDIWWLVP 324 (501)
Q Consensus 305 yv~GG~~~~-~~~~d~w~~~~ 324 (501)
|||||.... ..++|+|.+..
T Consensus 318 ~~~gG~~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 318 LMHGGKLPTNERTDDLYFYAV 338 (341)
T ss_pred EEEcCcCCCCccccceEEEec
Confidence 999999764 57899997753
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.4e-42 Score=360.74 Aligned_cols=269 Identities=24% Similarity=0.410 Sum_probs=247.1
Q ss_pred cEEEEEcccCC-CccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEcccc-CCCCCCcEEEEE
Q 010770 31 SKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF-GSRRLGDFWVLD 108 (501)
Q Consensus 31 ~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~-~~~~~~~~~~yd 108 (501)
+.||++||+.+ ....+.+.+||+.++.|..++ ++|.+|..+++++++++||++||++ +...++++++||
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---------~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---------PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecC---------CCCcccccccEEEECCEEEEEccccCCCcccceEEEec
Confidence 78999999986 678899999999999999987 6789999999999999999999999 688899999999
Q ss_pred CCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC
Q 010770 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (501)
Q Consensus 109 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~ 188 (501)
+.+++|..+++ |+.+|..++++++++ +||++||+++...++++++||+.+++|+.++ +|+.+|.+|+++++++
T Consensus 356 ~~~~~W~~~a~---M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRTNQWTPVAP---MNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCCceeccCC---ccCccccceeEEECC-EEEEEeccccccccccEEEecCCCCcccccC---CCCcceeeeEEEEECC
Confidence 99999999885 999999999999955 9999999999999999999999999999998 8999999999999999
Q ss_pred EEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCe
Q 010770 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYND 268 (501)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 268 (501)
+||++||...... .++++++|||.+++|+.++ +|+.+|.++++++.+++||++||.++. .....
T Consensus 429 ~iYi~GG~~~~~~------~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~-------~~~~~ 492 (571)
T KOG4441|consen 429 KLYIIGGGDGSSN------CLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGT-------SALSS 492 (571)
T ss_pred EEEEEcCcCCCcc------ccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCC-------Cccce
Confidence 9999999877553 4789999999999999999 899999999999999999999999863 24567
Q ss_pred EEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCCCccCcEEEecCCCCccccceecCCC
Q 010770 269 TIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPP 338 (501)
Q Consensus 269 v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~~~~~~d~~~~~w~~~~~ 338 (501)
+++|||.+++|+.+..+ +.+|..++++++++++|++||.++...++. +++|||.+++|+....
T Consensus 493 VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~----ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNT----VECYDPETDTWTEVTE 555 (571)
T ss_pred EEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccce----eEEcCCCCCceeeCCC
Confidence 99999999999999875 449999999999999999999999888877 5678999999998743
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.8e-39 Score=333.76 Aligned_cols=290 Identities=23% Similarity=0.355 Sum_probs=236.0
Q ss_pred CcCcEEEEECCcEEEEEcccCCCccCCceEEE--EcCC----CcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEc
Q 010770 20 RSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVY--DIDN----KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFG 93 (501)
Q Consensus 20 R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~y--d~~t----~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~G 93 (501)
..|...+. .+++|+.|+|..+.. ++.+-+| ++.+ ++|..++..+ .+|.||+.|+++++++.|||+|
T Consensus 111 ~~g~~f~~-~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~------~~P~pR~~h~~~~~~~~iyv~G 182 (470)
T PLN02193 111 RPGVKFVL-QGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG------EGPGLRCSHGIAQVGNKIYSFG 182 (470)
T ss_pred CCCCEEEE-cCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC------CCCCCccccEEEEECCEEEEEC
Confidence 34444444 458999999986543 5555444 7655 8999987543 3689999999999999999999
Q ss_pred cccC-C-CCCCcEEEEECCCCeEEEEecCCCCCCc-CCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEccc
Q 010770 94 GRFG-S-RRLGDFWVLDTDIWQWSELTSFGDLPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV 170 (501)
Q Consensus 94 G~~~-~-~~~~~~~~yd~~t~~W~~~~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 170 (501)
|... . ...+++|+||+.+++|+.+++.+++|.. |..|+++++++ +||||||.+....++++|+||+.+++|+++++
T Consensus 183 G~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~ 261 (470)
T PLN02193 183 GEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP 261 (470)
T ss_pred CcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCCEEEEcCc
Confidence 9853 2 2347899999999999998766566654 56788888865 99999999877788999999999999999985
Q ss_pred CCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEE
Q 010770 171 TGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLF 250 (501)
Q Consensus 171 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~ 250 (501)
.+..|.+|.+|+++.++++||||||..... .++.++.||+.+++|+.++.++.+|.+|..|++++.+++||++
T Consensus 262 ~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-------~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 262 VEEGPTPRSFHSMAADEENVYVFGGVSATA-------RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred CCCCCCCccceEEEEECCEEEEECCCCCCC-------CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence 445589999999999999999999986543 2467788999999999998777788999999999999999999
Q ss_pred cCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCC---------CccCcEEE
Q 010770 251 GGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK---------STFGDIWW 321 (501)
Q Consensus 251 GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~d~w~ 321 (501)
||.+. ...+++++||+.+++|+.+...+..|.+|..|++++++++||||||.... ...+|+|.
T Consensus 335 GG~~g--------~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 335 YGFNG--------CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred ECCCC--------CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 99753 13589999999999999999877678899999999999999999997531 13467776
Q ss_pred ecCCCCccccceecCC
Q 010770 322 LVPEEDPIAKRYTESP 337 (501)
Q Consensus 322 ~~~~~d~~~~~w~~~~ 337 (501)
|+ +.+++|+..+
T Consensus 407 ~D----~~t~~W~~~~ 418 (470)
T PLN02193 407 LD----TETLQWERLD 418 (470)
T ss_pred EE----cCcCEEEEcc
Confidence 55 5588898764
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-39 Score=340.83 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=226.3
Q ss_pred EEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEcccc-CCCCCCcEEEEECC
Q 010770 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF-GSRRLGDFWVLDTD 110 (501)
Q Consensus 32 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~ 110 (501)
.+++.||. .......+++||+.+++|..++ ++|.+|.+|++++++++||++||.. +....+++++||+.
T Consensus 259 ~l~~~~g~-~~~~~~~v~~yd~~~~~W~~l~---------~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~ 328 (557)
T PHA02713 259 CLVCHDTK-YNVCNPCILVYNINTMEYSVIS---------TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE 328 (557)
T ss_pred EEEEecCc-cccCCCCEEEEeCCCCeEEECC---------CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC
Confidence 45555552 1223357899999999999986 5788999999999999999999986 34457899999999
Q ss_pred CCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEE
Q 010770 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190 (501)
Q Consensus 111 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~l 190 (501)
+++|.++++ ||.+|..++++++++ +||++||.++....+++++||+.+++|+.++ +||.+|.++++++++++|
T Consensus 329 ~n~W~~~~~---m~~~R~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~I 401 (557)
T PHA02713 329 NKIHVELPP---MIKNRCRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYI 401 (557)
T ss_pred CCeEeeCCC---CcchhhceeEEEECC-EEEEECCcCCCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEE
Confidence 999999985 999999999999955 9999999987777889999999999999998 999999999999999999
Q ss_pred EEEcccCCCCCc-----cc------ccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCC
Q 010770 191 LIYGGRGGGGPI-----MG------DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (501)
Q Consensus 191 yv~GG~~~~~~~-----~~------d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~ 259 (501)
|++||.+..... .+ +...++.+++|||.+++|+.++ +++.+|..+++++.+++||++||.+...
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~-- 476 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEK-- 476 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCC--
Confidence 999998643211 00 0112578999999999999998 8899999999999999999999986422
Q ss_pred cccccccCeEEEEEcCC-CceEEcccCCCCCCcccceEEEEECCEEEEEccCCCCCccCcEEEecCCCCccccceecC
Q 010770 260 SRYDIYYNDTIILDRLS-AQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTES 336 (501)
Q Consensus 260 ~~~~~~~~~v~~yd~~~-~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~~~~~~d~~~~~w~~~ 336 (501)
...+.+++|||.+ ++|+.++.+ |.+|..+++++++++||++||.++.. ..++||+.+++|+..
T Consensus 477 ----~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~~~-------~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 477 ----NVKTCIFRYNTNTYNGWELITTT---ESRLSALHTILHDNTIMMLHCYESYM-------LQDTFNVYTYEWNHI 540 (557)
T ss_pred ----ccceeEEEecCCCCCCeeEcccc---CcccccceeEEECCEEEEEeeeccee-------ehhhcCcccccccch
Confidence 1235689999999 899999985 66999999999999999999988732 367999999999976
No 7
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.6e-38 Score=327.41 Aligned_cols=408 Identities=30% Similarity=0.445 Sum_probs=313.7
Q ss_pred CCCCCCCCCCcCcEEEEECCcEEEEEcccCCCccCCc--eEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCE
Q 010770 11 DFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSD--VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH 88 (501)
Q Consensus 11 ~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~ 88 (501)
+..+..|.+|.+|+++.++ +++|||||........+ +|++|..+..|......+. .|.+|++|+++.++++
T Consensus 52 ~~~~~~p~~R~~hs~~~~~-~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~------~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLIG-NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD------EPSPRYGHSLSAVGDK 124 (482)
T ss_pred ccCCCCcchhhccceeEEC-CEEEEECCCCCCCccccceeEEeecCCcccccccccCC------CCCcccceeEEEECCe
Confidence 4567899999999999997 79999999987666555 9999999999999887764 6799999999999999
Q ss_pred EEEEccccC-CCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCc-ccccEEEEECCCCceE
Q 010770 89 MFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWM 166 (501)
Q Consensus 89 iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~ 166 (501)
||+|||.+. ...+++++.||+.|++|..+.+.+++|.+|.+|+++++++ ++|||||.+... ..+++|+||+.+.+|.
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~~W~ 203 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLNDLHIYDLETSTWS 203 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceeeeeeeccccccce
Confidence 999999985 5668999999999999999999999999999999999986 999999998776 8999999999999999
Q ss_pred EcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCE
Q 010770 167 QLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHY 246 (501)
Q Consensus 167 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~ 246 (501)
++.+.|..|.||++|++++++++++||||......+++|+|.| |+.+..|..+...+..|.+|.+|+++..+.+
T Consensus 204 ~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l------dl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~ 277 (482)
T KOG0379|consen 204 ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL------DLSTWEWKLLPTGGDLPSPRSGHSLTVSGDH 277 (482)
T ss_pred ecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee------ecccceeeeccccCCCCCCcceeeeEEECCE
Confidence 9999999999999999999999999999998666677777766 9999999988888999999999999999999
Q ss_pred EEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCC-CCCCcccceEEEEEC----CEEEEEccCCCC-CccCcEE
Q 010770 247 LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN-EPPPARAYHSMTCLG----SLYLLFGGFDGK-STFGDIW 320 (501)
Q Consensus 247 i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~-~~p~~r~~~~~~~~~----~~iyv~GG~~~~-~~~~d~w 320 (501)
++++||..... .....++|.||+.+..|..+.... ..|.+|..|+++.+. ....++||.... ...++++
T Consensus 278 ~~l~gG~~~~~-----~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (482)
T KOG0379|consen 278 LLLFGGGTDPK-----QEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVF 352 (482)
T ss_pred EEEEcCCcccc-----cccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcc
Confidence 99999987642 025789999999999999999887 678899999888764 334455553322 2333443
Q ss_pred EecCCCCccccceecCCCCCCCCCCcccccccccceeeccccccchhhhhhhhhcCceecccCCCcccCCccchHHHHHH
Q 010770 321 WLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPGLQIMDELEDEEFLEL 400 (501)
Q Consensus 321 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 400 (501)
.+...-....+.|... ............+.. .
T Consensus 353 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~--------~---------------- 384 (482)
T KOG0379|consen 353 SLQIKLLSRKNEVQEP------------------------GTRAVEKVLALFRAE--------S---------------- 384 (482)
T ss_pred cccccccccCCccccc------------------------ccccchhhHhhhhcc--------c----------------
Confidence 3332222222222211 000000000000000 0
Q ss_pred HhhhhcCcccCCCcchhhhhhHHHHhhhccCCCCcccccccchhhHHHHHHHHHHHhcccc---cCCCCCCceeEEEEEe
Q 010770 401 ASRLMGAGVFSNGQVSRIQATQVLRDHWKKSTPRSIPIKELGPLLRDYQRLIARHLANLQS---TELGLPGKEAYTFYHL 477 (501)
Q Consensus 401 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 477 (501)
.+......++...+.+..+-+...+++|+.+.-.+++.++.......++ ....-.+....++.+.
T Consensus 385 ------------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (482)
T KOG0379|consen 385 ------------SAICIAELLYHERRRRNDSLKNTLQVKELSILCLDRIGLETFEKYTQESLTLFLFGGNVDLTEESSPL 452 (482)
T ss_pred ------------cccchHHhhhcchhhhcccccceecccchhhhhhhhhhhhccchhhhhhhhhhhhccccCcchhcccc
Confidence 0222245566667777778888888888888888877766554432222 2344455667788888
Q ss_pred cCCccccccchhHHHHHHhh
Q 010770 478 KNSSQLHMVDIPKLLEEYKK 497 (501)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~ 497 (501)
+.+..+...+.....+++..
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~ 472 (482)
T KOG0379|consen 453 KSSSELLSNDDRSMLRELNG 472 (482)
T ss_pred cccccccccchhhhhHHHhc
Confidence 88888888787777766554
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-38 Score=336.55 Aligned_cols=254 Identities=21% Similarity=0.347 Sum_probs=229.6
Q ss_pred ceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccC-CCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeE
Q 010770 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (501)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~ 81 (501)
+|..+++ +|.+|..+++++++ ++||++||.+ +...++.+++||+.+++|+.++ +++.+|..++
T Consensus 312 ~w~~~a~------m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---------~M~~~R~~~~ 375 (571)
T KOG4441|consen 312 EWSSLAP------MPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---------PMNTKRSDFG 375 (571)
T ss_pred cEeecCC------CCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccC---------CccCccccce
Confidence 5888874 99999999999998 6999999999 7888999999999999999976 6899999999
Q ss_pred EEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCc-ccccEEEEEC
Q 010770 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDT 160 (501)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~ 160 (501)
++++++.||++||+++...++++++||+.+++|..+.+ |+.+|.+|++++++ ++||++||.++.. .++++++|||
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~-g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLG-GKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEEC-CEEEEEcCcCCCccccceEEEEcC
Confidence 99999999999999999999999999999999999985 88999999999995 5999999998887 8999999999
Q ss_pred CCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEE
Q 010770 161 ISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI 240 (501)
Q Consensus 161 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~ 240 (501)
.+++|+.++ +|+.+|.++++++++++||++||.++.. .+..+++|||.+++|+.++ +++.+|..+++
T Consensus 452 ~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~-------~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~ 518 (571)
T KOG4441|consen 452 ETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTS-------ALSSVERYDPETNQWTMVA---PMTSPRSAVGV 518 (571)
T ss_pred CCCceeecC---CcccccccceEEEECCEEEEECCccCCC-------ccceEEEEcCCCCceeEcc---cCccccccccE
Confidence 999999999 9999999999999999999999998733 3577999999999999997 88999999999
Q ss_pred EEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEE
Q 010770 241 TSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTC 299 (501)
Q Consensus 241 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~ 299 (501)
+..++++|+.||..+. ...+.+..|||.+++|+....+ ...|...++++
T Consensus 519 ~~~~~~ly~vGG~~~~-------~~l~~ve~ydp~~d~W~~~~~~---~~~~~~~~~~~ 567 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGN-------NNLNTVECYDPETDTWTEVTEP---ESGRGGAGVAV 567 (571)
T ss_pred EEECCEEEEEecccCc-------cccceeEEcCCCCCceeeCCCc---cccccCcceEE
Confidence 9999999999997764 4889999999999999999882 22444444444
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.9e-37 Score=308.47 Aligned_cols=274 Identities=24% Similarity=0.367 Sum_probs=214.4
Q ss_pred cCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccC--CCCCCcEEEEECCCCeEEEEecCCCCCCc-CCc
Q 010770 53 IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSP-RDF 129 (501)
Q Consensus 53 ~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~~~~p~~-r~~ 129 (501)
+....|..+..... .+|.||.+|++++++++|||+||... ....+++++||+.+++|..+++.+..|.. +..
T Consensus 4 ~~~~~W~~~~~~~~-----~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~ 78 (341)
T PLN02153 4 TLQGGWIKVEQKGG-----KGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLG 78 (341)
T ss_pred ccCCeEEEecCCCC-----CCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCc
Confidence 46778999875432 46899999999999999999999854 23457999999999999998864444443 346
Q ss_pred cEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccC--CCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccc
Q 010770 130 AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT--GSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLW 207 (501)
Q Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~ 207 (501)
|+++++++ +||+|||.+....++++++||+.+++|+.++.. ...|.+|.+|++++++++|||+||....+.. +...
T Consensus 79 ~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~-~~~~ 156 (341)
T PLN02153 79 VRMVAVGT-KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLM-KTPE 156 (341)
T ss_pred eEEEEECC-EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCcc-CCCc
Confidence 78888865 999999998777788999999999999998721 1237899999999999999999998754321 1112
Q ss_pred cccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCC-cccccccCeEEEEEcCCCceEEcccCC
Q 010770 208 ALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL-SRYDIYYNDTIILDRLSAQWKRLPIGN 286 (501)
Q Consensus 208 ~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~-~~~~~~~~~v~~yd~~~~~W~~v~~~~ 286 (501)
.++.+++||+.+++|+.++..+..|.+|.+|++++.+++|||+||....-.. .......+++++||+.+++|+.+...+
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 3577889999999999998666667899999999999999999997531000 000123578999999999999998776
Q ss_pred CCCCcccceEEEEECCEEEEEccCCC---------CCccCcEEEecCCCCccccceecCC
Q 010770 287 EPPPARAYHSMTCLGSLYLLFGGFDG---------KSTFGDIWWLVPEEDPIAKRYTESP 337 (501)
Q Consensus 287 ~~p~~r~~~~~~~~~~~iyv~GG~~~---------~~~~~d~w~~~~~~d~~~~~w~~~~ 337 (501)
..|.+|..|++++++++||||||... ....+|+|.|+ +.+++|+...
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d----~~~~~W~~~~ 292 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALD----TETLVWEKLG 292 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEE----cCccEEEecc
Confidence 67889999999999999999999742 12346877654 5588898663
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4.8e-37 Score=309.45 Aligned_cols=278 Identities=22% Similarity=0.299 Sum_probs=215.1
Q ss_pred CCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEc--CCCcEEeceecCCCCCCCCCC-CCcceeEEEEeCCEEEE
Q 010770 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDI--DNKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (501)
Q Consensus 15 ~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~l~~~~~~~~~~~~p-~~R~~h~~~~~~~~iyv 91 (501)
++|.+|..+++++++ ++|||+||... +++++||+ .+++|..++ ++| .+|..|++++++++|||
T Consensus 3 ~lp~~~~~~~~~~~~-~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~---------~~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIG-DKVYVGLGSAG----TSWYKLDLKKPSKGWQKIA---------DFPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEEC-CEEEEEccccC----CeeEEEECCCCCCCceECC---------CCCCCCcccceEEEECCEEEE
Confidence 488999999988888 79999999743 67999996 578999986 456 58999999999999999
Q ss_pred EccccCC------CCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCc---------------
Q 010770 92 FGGRFGS------RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK--------------- 150 (501)
Q Consensus 92 ~GG~~~~------~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~--------------- 150 (501)
+||.... ..++++++||+.+++|++++. .+|.+|.+|+++.+.+++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 9998642 247899999999999999973 36777877877744466999999986321
Q ss_pred -------------------ccccEEEEECCCCceEEcccCCCCCC-CCcceeEEEeCCEEEEEcccCCCCCccccccccc
Q 010770 151 -------------------WLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (501)
Q Consensus 151 -------------------~~~~~~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~ 210 (501)
..+++++||+.+++|+.++ ++|. +|.+++++.++++|||+||....+.. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~ 217 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLR------TA 217 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCcc------ch
Confidence 1378999999999999997 8885 68999999999999999998643311 12
Q ss_pred cccc--ccCCCCceEEeecCCCCCCCc-------eeeEEEEeCCEEEEEcCCCCCCCC------cc----cccccCeEEE
Q 010770 211 GLIE--EENETPGWTQLKLPGQAPSSR-------CGHTITSGGHYLLLFGGHGTGGWL------SR----YDIYYNDTII 271 (501)
Q Consensus 211 ~~~~--Yd~~t~~W~~~~~~g~~p~~r-------~~~s~~~~~~~i~v~GG~~~~~~~------~~----~~~~~~~v~~ 271 (501)
.++. ||+++++|+.++ .+|.+| .+|++++.+++||++||....+.. .. .......+.+
T Consensus 218 ~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred heEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence 2333 456788999988 555544 466677899999999998632100 00 0011246899
Q ss_pred EEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCC-CccCcEEEec
Q 010770 272 LDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWLV 323 (501)
Q Consensus 272 yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~d~w~~~ 323 (501)
||+++++|+.+..+ |.+|..+++++++++|||+||.+.. ..++|++.+.
T Consensus 295 yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 295 YALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 99999999999875 5589888888999999999998764 4577777654
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=328.33 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=212.1
Q ss_pred ceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccC-CCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeE
Q 010770 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (501)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~ 81 (501)
+|..+++ +|.+|.+|++++++ ++||++||.. +....+++++||+.+++|..++ ++|.+|..++
T Consensus 283 ~W~~l~~------mp~~r~~~~~a~l~-~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---------~m~~~R~~~~ 346 (557)
T PHA02713 283 EYSVIST------IPNHIINYASAIVD-NEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---------PMIKNRCRFS 346 (557)
T ss_pred eEEECCC------CCccccceEEEEEC-CEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---------CCcchhhcee
Confidence 6888864 89999999999888 7999999985 3456789999999999999876 6789999999
Q ss_pred EEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCc-----------
Q 010770 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK----------- 150 (501)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~----------- 150 (501)
+++++++||++||.++...++++++||+.+++|..+++ ||.+|..+++++++ ++||++||.++..
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLD-QYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC---CCcccccccEEEEC-CEEEEEeCCCcccccccccccccc
Confidence 99999999999999877778899999999999999985 99999999999985 5999999986421
Q ss_pred -------ccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCC-Cce
Q 010770 151 -------WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET-PGW 222 (501)
Q Consensus 151 -------~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t-~~W 222 (501)
..+.+++|||.+++|+.++ +|+.+|.++++++++++|||+||.+.... ..+.+++|||.+ ++|
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTNTYNGW 493 (557)
T ss_pred cccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCCCCCCe
Confidence 3578999999999999998 99999999999999999999999864321 125679999999 899
Q ss_pred EEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCC
Q 010770 223 TQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN 286 (501)
Q Consensus 223 ~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~ 286 (501)
+.++ ++|.+|..+++++.+++||++||.++ ...+.+||+.+++|+.+....
T Consensus 494 ~~~~---~m~~~r~~~~~~~~~~~iyv~Gg~~~----------~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 494 ELIT---TTESRLSALHTILHDNTIMMLHCYES----------YMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred eEcc---ccCcccccceeEEECCEEEEEeeecc----------eeehhhcCcccccccchhhhc
Confidence 9998 89999999999999999999999864 137899999999999988753
No 12
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.5e-37 Score=301.78 Aligned_cols=343 Identities=29% Similarity=0.533 Sum_probs=276.3
Q ss_pred CcceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCccee
Q 010770 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFH 80 (501)
Q Consensus 1 ~~~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h 80 (501)
+.+|.++. .+.|+.|.+|.||.++++. +.|+||||- +.+..+++++||..+++|......+ +.|.+-..|
T Consensus 16 ~~rWrrV~--~~tGPvPrpRHGHRAVaik-ELiviFGGG-NEGiiDELHvYNTatnqWf~PavrG------DiPpgcAA~ 85 (830)
T KOG4152|consen 16 VVRWRRVQ--QSTGPVPRPRHGHRAVAIK-ELIVIFGGG-NEGIIDELHVYNTATNQWFAPAVRG------DIPPGCAAF 85 (830)
T ss_pred ccceEEEe--cccCCCCCccccchheeee-eeEEEecCC-cccchhhhhhhccccceeecchhcC------CCCCchhhc
Confidence 35899997 4779999999999999998 799999995 4456789999999999999987665 478888888
Q ss_pred EEEEeCCEEEEEccccC-CCCCCcEEEEECCCCeEEEEec----CCCCCCcCCccEEEEEcCcEEEEEecCCCC------
Q 010770 81 IAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS----FGDLPSPRDFAAASAIGNRKIVMYGGWDGK------ 149 (501)
Q Consensus 81 ~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~----~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~------ 149 (501)
..+..+.+||+|||+.+ +++.||+|.+-.....|.++.+ .|.+|.+|.+|+...+++ +.|+|||...+
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdseDpkn 164 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSEDPKN 164 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccccccccCccc
Confidence 88999999999999987 6778999888888889988865 567899999999999986 99999997432
Q ss_pred ---cccccEEEEECCCCc----eEEcccCCCCCCCCcceeEEEe------CCEEEEEcccCCCCCccccccccccccccc
Q 010770 150 ---KWLSDVYVLDTISLE----WMQLPVTGSVPPPRCGHTATMV------EKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (501)
Q Consensus 150 ---~~~~~~~~yd~~t~~----W~~~~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd 216 (501)
.+++|+|++++..+. |...-+.|..|.+|-.|+++.. ..++||+||.++ ..+.|+|.| |
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~L------d 236 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTL------D 236 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEE------e
Confidence 478999999987543 9998889999999999999887 238999999976 467888888 9
Q ss_pred CCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCC-------CCCCcccccccCeEEEEEcCCCceEEcccC----
Q 010770 217 NETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT-------GGWLSRYDIYYNDTIILDRLSAQWKRLPIG---- 285 (501)
Q Consensus 217 ~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~-------~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~---- 285 (501)
++|-+|.+....|-.|.+|.-|+++.+++++|||||.-. ......+-.+.+.+-++|+++..|..+-..
T Consensus 237 l~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed 316 (830)
T KOG4152|consen 237 LDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLED 316 (830)
T ss_pred cceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccc
Confidence 999999999999999999999999999999999999531 111223345678888999999999986331
Q ss_pred CCCCCcccceEEEEECCEEEEEccCCCCC-------ccCcEEEecCCCCccccceecCCCCCCCCCCcccccccccceee
Q 010770 286 NEPPPARAYHSMTCLGSLYLLFGGFDGKS-------TFGDIWWLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAV 358 (501)
Q Consensus 286 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~d~w~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (501)
...|.+|.+||++.++.++|+..|.+|-. -..|+|.++-+..+.-.+-... ....+..++.+
T Consensus 317 ~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~-----------rA~tNSlevsW 385 (830)
T KOG4152|consen 317 NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLV-----------RANTNSLEVSW 385 (830)
T ss_pred cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEE-----------ecccceeEEec
Confidence 22588999999999999999999998742 3567887775544433322221 22233355677
Q ss_pred ccccccchhhhhhhh
Q 010770 359 KESQRESSAIVELQK 373 (501)
Q Consensus 359 ~~~~~~~~~~~~l~~ 373 (501)
..-.....|+++|++
T Consensus 386 ~~V~ta~gYlLQl~~ 400 (830)
T KOG4152|consen 386 GAVATADGYLLQLQY 400 (830)
T ss_pred hhhccccceeEEeec
Confidence 777777778877774
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.4e-36 Score=306.94 Aligned_cols=282 Identities=20% Similarity=0.262 Sum_probs=215.9
Q ss_pred CCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcC--CCcEEeceecCCCCCCCCCC-CCcceeEEEEeCCEEEE
Q 010770 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (501)
Q Consensus 15 ~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~~~~~~p-~~R~~h~~~~~~~~iyv 91 (501)
++|.+|..+++++++ ++|||+||... +.+++||+. +++|..++ ++| .+|..|++++++++|||
T Consensus 24 ~lP~~~~~~~~~~~~-~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~---------~~p~~~r~~~~~v~~~~~IYV 89 (376)
T PRK14131 24 DLPVPFKNGTGAIDN-NTVYVGLGSAG----TSWYKLDLNAPSKGWTKIA---------AFPGGPREQAVAAFIDGKLYV 89 (376)
T ss_pred CCCcCccCCeEEEEC-CEEEEEeCCCC----CeEEEEECCCCCCCeEECC---------cCCCCCcccceEEEECCEEEE
Confidence 489999988888887 79999999743 458999987 47899876 344 48999999999999999
Q ss_pred EccccC------CCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC----------------
Q 010770 92 FGGRFG------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK---------------- 149 (501)
Q Consensus 92 ~GG~~~------~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~---------------- 149 (501)
+||... ...++++++||+.+++|+.+++ ..|.++.+|+++++.+++||++||....
T Consensus 90 ~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~ 167 (376)
T PRK14131 90 FGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK 167 (376)
T ss_pred EcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence 999864 1346899999999999999974 3577788888877446699999997532
Q ss_pred ------------------cccccEEEEECCCCceEEcccCCCCCC-CCcceeEEEeCCEEEEEcccCCCCCccccccccc
Q 010770 150 ------------------KWLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (501)
Q Consensus 150 ------------------~~~~~~~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~ 210 (501)
...+++++||+.+++|+.+. ++|. +|.+|+++.++++|||+||....+....++|.+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~- 243 (376)
T PRK14131 168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQG- 243 (376)
T ss_pred hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEE-
Confidence 02478999999999999987 7875 788999999999999999976544333333322
Q ss_pred ccccccCCCCceEEeecCCCCCCCce--------eeEEEEeCCEEEEEcCCCCCCCCc-----c-----cccccCeEEEE
Q 010770 211 GLIEEENETPGWTQLKLPGQAPSSRC--------GHTITSGGHYLLLFGGHGTGGWLS-----R-----YDIYYNDTIIL 272 (501)
Q Consensus 211 ~~~~Yd~~t~~W~~~~~~g~~p~~r~--------~~s~~~~~~~i~v~GG~~~~~~~~-----~-----~~~~~~~v~~y 272 (501)
.||+++++|+.+. .+|.+|. ++.+++.+++|||+||.+...... . .......+++|
T Consensus 244 ---~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 317 (376)
T PRK14131 244 ---KFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY 317 (376)
T ss_pred ---EecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE
Confidence 4688999999988 5665553 233567899999999976422000 0 00011357899
Q ss_pred EcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCC-CccCcEEEecCC
Q 010770 273 DRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWLVPE 325 (501)
Q Consensus 273 d~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~d~w~~~~~ 325 (501)
|+.+++|+.+..+ |.+|..++++.++++|||+||.... ..++|++.|...
T Consensus 318 d~~~~~W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 318 ALVNGKWQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred EecCCcccccCcC---CCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 9999999998864 5689999999999999999997653 467888876644
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.5e-36 Score=301.20 Aligned_cols=271 Identities=19% Similarity=0.298 Sum_probs=211.0
Q ss_pred CCCcCcEEEEECCcEEEEEcccCCC----------ccCCceEEEEcCC--CcEEeceecCCCCCCCCCCCCcceeEEEEe
Q 010770 18 QPRSGHSAVNIGKSKVVVFGGLVDK----------RFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAI 85 (501)
Q Consensus 18 ~~R~~h~~~~~~~~~iyv~GG~~~~----------~~~~~v~~yd~~t--~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~ 85 (501)
..+.||.+++++ +.|||+||.+.. ...+++++|+... .+|..++ ++|.+|..++++++
T Consensus 2 ~~~~g~~~~~~~-~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---------~lp~~r~~~~~~~~ 71 (323)
T TIGR03548 2 LGVAGCYAGIIG-DYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---------QLPYEAAYGASVSV 71 (323)
T ss_pred CceeeEeeeEEC-CEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---------cCCccccceEEEEE
Confidence 357788889998 699999998643 2346899886332 3798875 57889998999999
Q ss_pred CCEEEEEccccCCCCCCcEEEEECCCCeEE-EEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
++.||++||.++...++++++||+.+++|. .....+++|.+|..|+++++++ +||++||.......+++++||+.+++
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEEEcCCCCC
Confidence 999999999988777899999999999983 1222235999999999998855 99999998666668899999999999
Q ss_pred eEEcccCCCCC-CCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCC--CCCCCceeeEE-
Q 010770 165 WMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG--QAPSSRCGHTI- 240 (501)
Q Consensus 165 W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g--~~p~~r~~~s~- 240 (501)
|++++ ++| .+|..|+++.++++|||+||..... ..++++||+.+++|+.++... ..|.++..+++
T Consensus 151 W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~ 219 (323)
T TIGR03548 151 WFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNIA--------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASI 219 (323)
T ss_pred eeECC---CCCCCCCCcceEEEECCEEEEEcCCCCcc--------ccceEEEecCCCeeEECCCCCCCCCceeccceeEE
Confidence 99997 676 4789999999999999999985432 245679999999999987432 23444444444
Q ss_pred EEeCCEEEEEcCCCCCCCCc-------------------------ccccccCeEEEEEcCCCceEEcccCCCCCCcccce
Q 010770 241 TSGGHYLLLFGGHGTGGWLS-------------------------RYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYH 295 (501)
Q Consensus 241 ~~~~~~i~v~GG~~~~~~~~-------------------------~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~ 295 (501)
++.+++||++||.+...... ....+.+++++||+.+++|+.++.+ +..+|..+
T Consensus 220 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~ 297 (323)
T TIGR03548 220 KINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGA 297 (323)
T ss_pred EECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCch
Confidence 44678999999986421000 0011247899999999999999864 23589999
Q ss_pred EEEEECCEEEEEccCCC
Q 010770 296 SMTCLGSLYLLFGGFDG 312 (501)
Q Consensus 296 ~~~~~~~~iyv~GG~~~ 312 (501)
+++.++++||++||...
T Consensus 298 ~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 298 ALLLTGNNIFSINGELK 314 (323)
T ss_pred heEEECCEEEEEecccc
Confidence 99999999999999654
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=6e-37 Score=276.30 Aligned_cols=241 Identities=28% Similarity=0.485 Sum_probs=210.2
Q ss_pred cceEEeeeCCC----CC---CCCCCCcCcEEEEECCcEEEEEcccCC-CccCCceEEEEcCCCcEEeceecCCCCCCCCC
Q 010770 2 HYWVRASSSDF----GG---TVPQPRSGHSAVNIGKSKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVG 73 (501)
Q Consensus 2 ~~W~~~~~~~~----~g---~~P~~R~~h~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~ 73 (501)
++|+++++-.. .+ ..|..|+||+++.+. +++||+||.++ .+..+-+++||++++.|.+....+. .
T Consensus 54 ~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~------v 126 (392)
T KOG4693|consen 54 YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF------V 126 (392)
T ss_pred eeEEecCcccccccccCCCCccchhhcCceEEEEc-ceEEEEcCccCcccccceeeeeccccccccccceeee------c
Confidence 68999987221 11 467789999999999 79999999987 6678899999999999999887664 7
Q ss_pred CCCcceeEEEEeCCEEEEEccccC--CCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC--
Q 010770 74 PGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-- 149 (501)
Q Consensus 74 p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-- 149 (501)
|.+|.+|++|++++.+|||||+.. ....++++++|..|.+|+.+.+.+++|.-|.+|++++++ +.+|||||+...
T Consensus 127 PgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~g 205 (392)
T KOG4693|consen 127 PGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESG 205 (392)
T ss_pred CCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCC
Confidence 999999999999999999999965 556889999999999999999999999999999999996 599999997532
Q ss_pred -------cccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCce
Q 010770 150 -------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW 222 (501)
Q Consensus 150 -------~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W 222 (501)
.+.+.+-.+|..|..|...++.+-.|.+|..|++.+.|++||+|||+.+.-.. .+++++.|||.+..|
T Consensus 206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W 280 (392)
T KOG4693|consen 206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMW 280 (392)
T ss_pred CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh-----hhcceeecccccchh
Confidence 35667888999999999998888889999999999999999999999763211 245566669999999
Q ss_pred EEeecCCCCCCCceeeEEEEeCCEEEEEcCCCC
Q 010770 223 TQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT 255 (501)
Q Consensus 223 ~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~ 255 (501)
+.+...|..|.+|..+++++.++++|+|||...
T Consensus 281 ~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 281 SVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 999999999999999999999999999999754
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=304.42 Aligned_cols=267 Identities=16% Similarity=0.141 Sum_probs=220.0
Q ss_pred EEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCC-CCCCcEEEEECC
Q 010770 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS-RRLGDFWVLDTD 110 (501)
Q Consensus 32 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~ 110 (501)
.+++.||.. .....+..|+..+.+|..+.. .| .+.+|+++++++.||++||.... ...+++++||+.
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~ 319 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTIID---------IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK 319 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhcccccC---------cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCC
Confidence 455556644 234556788998999988752 22 24567899999999999999763 356799999999
Q ss_pred CCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEE
Q 010770 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190 (501)
Q Consensus 111 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~l 190 (501)
+++|..+++ +|.+|..|+++++++ +||++||.+.....+++++||+.+++|+.++ ++|.+|.+|+++.++++|
T Consensus 320 ~~~W~~~~~---~~~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~i 392 (534)
T PHA03098 320 TKSWNKVPE---LIYPRKNPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLI 392 (534)
T ss_pred CCeeeECCC---CCcccccceEEEECC-EEEEEeCCCCCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEE
Confidence 999998874 899999999999855 9999999987777889999999999999988 899999999999999999
Q ss_pred EEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEE
Q 010770 191 LIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (501)
Q Consensus 191 yv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 270 (501)
||+||....+. .++.+++||+.+++|+.++ ++|.+|.+|+++..+++||++||.+.... ....+.++
T Consensus 393 Yv~GG~~~~~~------~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~v~ 459 (534)
T PHA03098 393 YVIGGISKNDE------LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDN----IKVYNIVE 459 (534)
T ss_pred EEECCcCCCCc------ccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCC----CcccceEE
Confidence 99999765432 2577889999999999987 78999999999999999999999864321 11346799
Q ss_pred EEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCCCccCcEEEecCCCCccccceecCC
Q 010770 271 ILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESP 337 (501)
Q Consensus 271 ~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~~~~~~d~~~~~w~~~~ 337 (501)
+||+.+++|+.++.+ |.+|..++++.++++|||+||.++....++++ .||+.+++|+..+
T Consensus 460 ~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~----~yd~~~~~W~~~~ 519 (534)
T PHA03098 460 SYNPVTNKWTELSSL---NFPRINASLCIFNNKIYVVGGDKYEYYINEIE----VYDDKTNTWTLFC 519 (534)
T ss_pred EecCCCCceeeCCCC---CcccccceEEEECCEEEEEcCCcCCcccceeE----EEeCCCCEEEecC
Confidence 999999999999874 45899999999999999999988765567765 4667799998764
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.8e-34 Score=304.11 Aligned_cols=235 Identities=19% Similarity=0.259 Sum_probs=202.2
Q ss_pred CcCcEEEEECCcEEEEEcccCCCc-cCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCC
Q 010770 20 RSGHSAVNIGKSKVVVFGGLVDKR-FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS 98 (501)
Q Consensus 20 R~~h~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~ 98 (501)
+..|++++++ +.||++||..... ..+++++||+.+++|..++ ++|.+|.+|++++++++||++||..+.
T Consensus 285 ~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---------~~~~~R~~~~~~~~~~~lyv~GG~~~~ 354 (534)
T PHA03098 285 VYCFGSVVLN-NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---------ELIYPRKNPGVTVFNNRIYVIGGIYNS 354 (534)
T ss_pred cccceEEEEC-CEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---------CCCcccccceEEEECCEEEEEeCCCCC
Confidence 4556777787 7999999987543 5679999999999998875 568899999999999999999999877
Q ss_pred CCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCC-CcccccEEEEECCCCceEEcccCCCCCCC
Q 010770 99 RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVPPP 177 (501)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~p~~ 177 (501)
...+++++||+.+++|+.+++ +|.+|..|+++++++ +||++||... ...++++++||+.+++|+.++ ++|.+
T Consensus 355 ~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~ 427 (534)
T PHA03098 355 ISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPIS 427 (534)
T ss_pred EecceEEEEcCCCCceeeCCC---cCcCCccceEEEECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCcc
Confidence 778999999999999999875 999999999988855 9999999753 345788999999999999998 89999
Q ss_pred CcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCC
Q 010770 178 RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGG 257 (501)
Q Consensus 178 r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~ 257 (501)
|.+|+++.++++|||+||....... ..++.+++||+.+++|+.++ .+|.+|..++++..+++||++||.....
T Consensus 428 r~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 428 HYGGCAIYHDGKIYVIGGISYIDNI----KVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYEY 500 (534)
T ss_pred ccCceEEEECCEEEEECCccCCCCC----cccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCCc
Confidence 9999999999999999998653311 12456899999999999997 6788899999999999999999987532
Q ss_pred CCcccccccCeEEEEEcCCCceEEcccC
Q 010770 258 WLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (501)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (501)
..+++++||+.+++|+.++..
T Consensus 501 -------~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 501 -------YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred -------ccceeEEEeCCCCEEEecCCC
Confidence 468899999999999999864
No 18
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=7.7e-34 Score=295.07 Aligned_cols=248 Identities=41% Similarity=0.706 Sum_probs=223.6
Q ss_pred CCCCCcceeEEEEeCCEEEEEccccCCCCCCc--EEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCC-
Q 010770 72 VGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD--FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG- 148 (501)
Q Consensus 72 ~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~--~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~- 148 (501)
..|.+|+.|+++.+++++|||||........+ +|++|..+..|......+..|.+|.+|+++++++ +||+|||.+.
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfGG~~~~ 134 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGD-KLYLFGGTDKK 134 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECC-eEEEEccccCC
Confidence 57999999999999999999999987655555 9999999999999999999999999999999976 9999999984
Q ss_pred CcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecC
Q 010770 149 KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLP 228 (501)
Q Consensus 149 ~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~ 228 (501)
...++++++||+.|++|+.+.+.+.+|++|.+|+++.++++||||||....+... +++++||+.+.+|.++.+.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~------ndl~i~d~~~~~W~~~~~~ 208 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSL------NDLHIYDLETSTWSELDTQ 208 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccce------eeeeeeccccccceecccC
Confidence 5668899999999999999999999999999999999999999999998876544 5555669999999999999
Q ss_pred CCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEc
Q 010770 229 GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (501)
Q Consensus 229 g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 308 (501)
|..|.||.+|++++++++++|+||.... +.+++|+|.||+.+..|..+...+..|.+|.+|++++.+.+++++|
T Consensus 209 g~~P~pR~gH~~~~~~~~~~v~gG~~~~------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 209 GEAPSPRYGHAMVVVGNKLLVFGGGDDG------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFG 282 (482)
T ss_pred CCCCCCCCCceEEEECCeEEEEeccccC------CceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEc
Confidence 9999999999999999999999998732 4699999999999999999998888999999999999999999999
Q ss_pred cCCCC-C-ccCcEEEecCCCCccccceecC
Q 010770 309 GFDGK-S-TFGDIWWLVPEEDPIAKRYTES 336 (501)
Q Consensus 309 G~~~~-~-~~~d~w~~~~~~d~~~~~w~~~ 336 (501)
|.... . .++|+|.|+.. +..|+..
T Consensus 283 G~~~~~~~~l~~~~~l~~~----~~~w~~~ 308 (482)
T KOG0379|consen 283 GGTDPKQEPLGDLYGLDLE----TLVWSKV 308 (482)
T ss_pred CCccccccccccccccccc----ccceeee
Confidence 98874 2 68898877665 7788766
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=286.28 Aligned_cols=214 Identities=19% Similarity=0.283 Sum_probs=187.1
Q ss_pred cEEEE-ECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCC
Q 010770 23 HSAVN-IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL 101 (501)
Q Consensus 23 h~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~ 101 (501)
|+.++ .+ +.||++||.++....+.+++||+.+++|..++ ++|.+|..+++++++++||++||..+.
T Consensus 264 ~~~~~~~~-~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---------~m~~~r~~~~~v~~~~~iYviGG~~~~--- 330 (480)
T PHA02790 264 MCTSTHVG-EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---------PMNSPRLYASGVPANNKLYVVGGLPNP--- 330 (480)
T ss_pred CcceEEEC-CEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---------CCCchhhcceEEEECCEEEEECCcCCC---
Confidence 44344 55 79999999977777889999999999999986 578899999999999999999997532
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcce
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 181 (501)
+++++||+.+++|..+++ +|.+|..|++++++ ++||++||.+.. .+.+++||+.+++|+.++ +|+.+|.+|
T Consensus 331 ~sve~ydp~~n~W~~~~~---l~~~r~~~~~~~~~-g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~ 401 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPS---LLKPRCNPAVASIN-NVIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKS 401 (480)
T ss_pred CceEEEECCCCeEEECCC---CCCCCcccEEEEEC-CEEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccc
Confidence 579999999999999985 99999999999885 599999998643 367899999999999998 899999999
Q ss_pred eEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcc
Q 010770 182 TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSR 261 (501)
Q Consensus 182 ~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~ 261 (501)
++++++++|||+||. +++||+++++|+.++ ++|.+|..+++++.+++||++||.+...
T Consensus 402 ~~~~~~~~IYv~GG~---------------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~~---- 459 (480)
T PHA02790 402 CALVFGRRLFLVGRN---------------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRGS---- 459 (480)
T ss_pred eEEEECCEEEEECCc---------------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCCc----
Confidence 999999999999983 357899999999998 7899999999999999999999986422
Q ss_pred cccccCeEEEEEcCCCceEEcc
Q 010770 262 YDIYYNDTIILDRLSAQWKRLP 283 (501)
Q Consensus 262 ~~~~~~~v~~yd~~~~~W~~v~ 283 (501)
..+.+++||+.+++|+...
T Consensus 460 ---~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 460 ---YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ---ccceEEEEECCCCeEEecC
Confidence 4578999999999998754
No 20
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=7e-33 Score=263.81 Aligned_cols=255 Identities=28% Similarity=0.551 Sum_probs=212.6
Q ss_pred CCCCCCcCcEEEEE-CCcEEEEEcccCC-C---ccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeC-CE
Q 010770 15 TVPQPRSGHSAVNI-GKSKVVVFGGLVD-K---RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CH 88 (501)
Q Consensus 15 ~~P~~R~~h~~~~~-~~~~iyv~GG~~~-~---~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~~ 88 (501)
.+|.||.+.++++. ..+.+++|||..- + ...+|+++||+.+++|..+.. +..|.||+.|.+|++. +.
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-------pn~P~pRsshq~va~~s~~ 134 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-------PNAPPPRSSHQAVAVPSNI 134 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-------CCCcCCCccceeEEeccCe
Confidence 57899999998884 3358999999642 2 346899999999999999874 3579999999999986 89
Q ss_pred EEEEccccCC------CCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC----cccccEEEE
Q 010770 89 MFIFGGRFGS------RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVL 158 (501)
Q Consensus 89 iyv~GG~~~~------~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~y 158 (501)
+|+|||.... -.+.|+|+||..+++|+++... ..|.+|.+|-|++..+ +|++|||+... .++|++|+|
T Consensus 135 l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~F 212 (521)
T KOG1230|consen 135 LWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAF 212 (521)
T ss_pred EEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEE
Confidence 9999997431 2378999999999999999864 5899999999999976 99999998543 478999999
Q ss_pred ECCCCceEEcccCCCCCCCCcceeEEEe-CCEEEEEcccCC--------CCCcccccccccccccccCCC-----CceEE
Q 010770 159 DTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGG--------GGPIMGDLWALKGLIEEENET-----PGWTQ 224 (501)
Q Consensus 159 d~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~--------~~~~~~d~~~l~~~~~Yd~~t-----~~W~~ 224 (501)
|+.|.+|+++.+.|.-|.||.||++.+. .+.|||+||++. .+...+|+|.| ++.. -.|+.
T Consensus 213 dLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L------~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 213 DLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLL------KPEDGREDKWVWTK 286 (521)
T ss_pred eccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeee------cCCcCCCcceeEee
Confidence 9999999999998889999999999998 899999999874 34466777776 6666 68999
Q ss_pred eecCCCCCCCceeeEEEEe-CCEEEEEcCCCC--CCCCcccccccCeEEEEEcCCCceEEccc
Q 010770 225 LKLPGQAPSSRCGHTITSG-GHYLLLFGGHGT--GGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 225 ~~~~g~~p~~r~~~s~~~~-~~~i~v~GG~~~--~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
+...|..|.||.++++++. +++-+.|||.-. ....+-...+.|++|.||+..++|.....
T Consensus 287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 9988999999999999985 559999999743 11122345689999999999999987643
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.5e-32 Score=271.30 Aligned_cols=233 Identities=19% Similarity=0.297 Sum_probs=182.8
Q ss_pred ceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEE-eceecCCCCCCCCCCCCcceeE
Q 010770 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWF-QPECTGNGSNGQVGPGPRAFHI 81 (501)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-~l~~~~~~~~~~~~p~~R~~h~ 81 (501)
+|.+++ ++|.+|..|++++++ ++||++||..+...++++++||+.+++|. ..... +++|.+|..|+
T Consensus 52 ~W~~~~------~lp~~r~~~~~~~~~-~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~------~~lp~~~~~~~ 118 (323)
T TIGR03548 52 KWVKDG------QLPYEAAYGASVSVE-NGIYYIGGSNSSERFSSVYRITLDESKEELICETI------GNLPFTFENGS 118 (323)
T ss_pred eEEEcc------cCCccccceEEEEEC-CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEc------CCCCcCccCce
Confidence 588876 489999888888887 79999999988778899999999999983 11111 25789999999
Q ss_pred EEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC-CcCCccEEEEEcCcEEEEEecCCCCcccccEEEEEC
Q 010770 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT 160 (501)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 160 (501)
+++++++|||+||..+...++++++||+.+++|+++++ +| .+|..|+++++++ +|||+||.+... ..++++||+
T Consensus 119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~-~iYv~GG~~~~~-~~~~~~yd~ 193 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD---FPGEPRVQPVCVKLQN-ELYVFGGGSNIA-YTDGYKYSP 193 (323)
T ss_pred EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC---CCCCCCCcceEEEECC-EEEEEcCCCCcc-ccceEEEec
Confidence 99999999999998766678999999999999999974 66 4788888877855 999999986543 457899999
Q ss_pred CCCceEEcccCC--CCCCCCcceeEEE-eCCEEEEEcccCCCCCccc-------------------------cccc-ccc
Q 010770 161 ISLEWMQLPVTG--SVPPPRCGHTATM-VEKRLLIYGGRGGGGPIMG-------------------------DLWA-LKG 211 (501)
Q Consensus 161 ~t~~W~~~~~~~--~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~-------------------------d~~~-l~~ 211 (501)
.+++|+.++... ..|..+.+++.++ .+++|||+||...... .+ +.+. .+.
T Consensus 194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (323)
T TIGR03548 194 KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVY-NDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK 272 (323)
T ss_pred CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHH-HHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence 999999997321 2344444555444 4789999999864210 00 0011 256
Q ss_pred cccccCCCCceEEeecCCCCC-CCceeeEEEEeCCEEEEEcCCCCCC
Q 010770 212 LIEEENETPGWTQLKLPGQAP-SSRCGHTITSGGHYLLLFGGHGTGG 257 (501)
Q Consensus 212 ~~~Yd~~t~~W~~~~~~g~~p-~~r~~~s~~~~~~~i~v~GG~~~~~ 257 (501)
+++||+.+++|+.++ ++| .+|.+++++..+++||++||....+
T Consensus 273 v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 273 ILIYNVRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred EEEEECCCCeeeEcc---cccccccCchheEEECCEEEEEeccccCC
Confidence 999999999999997 555 5899999999999999999986644
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.1e-31 Score=267.24 Aligned_cols=241 Identities=24% Similarity=0.332 Sum_probs=185.6
Q ss_pred cceEEeeeCCCCCCCC-CCCcCcEEEEECCcEEEEEcccCCC------ccCCceEEEEcCCCcEEeceecCCCCCCCCCC
Q 010770 2 HYWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVDK------RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGP 74 (501)
Q Consensus 2 ~~W~~~~~~~~~g~~P-~~R~~h~~~~~~~~~iyv~GG~~~~------~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p 74 (501)
.+|.++++ +| .+|.+|++++++ ++|||+||.... ..++++++||+.+++|+.++. ++|
T Consensus 41 ~~W~~l~~------~p~~~R~~~~~~~~~-~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--------~~p 105 (346)
T TIGR03547 41 KGWQKIAD------FPGGPRNQAVAAAID-GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--------RSP 105 (346)
T ss_pred CCceECCC------CCCCCcccceEEEEC-CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--------CCC
Confidence 36888864 77 589999999998 799999998642 247899999999999999852 246
Q ss_pred CCcceeEEE-EeCCEEEEEccccCCC----------------------------------CCCcEEEEECCCCeEEEEec
Q 010770 75 GPRAFHIAV-AIDCHMFIFGGRFGSR----------------------------------RLGDFWVLDTDIWQWSELTS 119 (501)
Q Consensus 75 ~~R~~h~~~-~~~~~iyv~GG~~~~~----------------------------------~~~~~~~yd~~t~~W~~~~~ 119 (501)
.+|.+|+++ +++++||++||.+... .++++++||+.+++|+.+++
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~ 185 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE 185 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc
Confidence 778888777 6899999999986321 24789999999999999975
Q ss_pred CCCCCC-cCCccEEEEEcCcEEEEEecCCCCc-ccccEEEEE--CCCCceEEcccCCCCCCCC-------cceeEEEeCC
Q 010770 120 FGDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLD--TISLEWMQLPVTGSVPPPR-------CGHTATMVEK 188 (501)
Q Consensus 120 ~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd--~~t~~W~~~~~~~~~p~~r-------~~~~~~~~~~ 188 (501)
+|. +|..++++++++ +|||+||..... ....++.|+ +.+++|+.++ +||.+| .+|+++++++
T Consensus 186 ---~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~ 258 (346)
T TIGR03547 186 ---NPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNG 258 (346)
T ss_pred ---CCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECC
Confidence 775 678888888855 999999986433 234566665 5778999998 777654 3566778899
Q ss_pred EEEEEcccCCCCCc--------c-c-ccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCC
Q 010770 189 RLLIYGGRGGGGPI--------M-G-DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (501)
Q Consensus 189 ~lyv~GG~~~~~~~--------~-~-d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~ 258 (501)
+|||+||....+.. . . ....+..+++||+++++|+.+. ++|.+|..++++..+++|||+||.+..+
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~~iyv~GG~~~~~- 334 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNNGVLLIGGENSGG- 334 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCCEEEEEeccCCCC-
Confidence 99999998632110 0 0 0012346899999999999998 7899999999888999999999987644
Q ss_pred CcccccccCeEEEEE
Q 010770 259 LSRYDIYYNDTIILD 273 (501)
Q Consensus 259 ~~~~~~~~~~v~~yd 273 (501)
...++|+.|.
T Consensus 335 -----~~~~~v~~~~ 344 (346)
T TIGR03547 335 -----KAVTDVYLLS 344 (346)
T ss_pred -----CEeeeEEEEE
Confidence 4667887664
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=4e-31 Score=268.63 Aligned_cols=248 Identities=24% Similarity=0.295 Sum_probs=190.0
Q ss_pred ceEEeeeCCCCCCCC-CCCcCcEEEEECCcEEEEEcccCC------CccCCceEEEEcCCCcEEeceecCCCCCCCCCCC
Q 010770 3 YWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVD------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG 75 (501)
Q Consensus 3 ~W~~~~~~~~~g~~P-~~R~~h~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~ 75 (501)
.|.++++ +| .+|.+|++++++ ++|||+||... ...++++|+||+.+++|..++. ..|.
T Consensus 63 ~W~~l~~------~p~~~r~~~~~v~~~-~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--------~~p~ 127 (376)
T PRK14131 63 GWTKIAA------FPGGPREQAVAAFID-GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--------RSPV 127 (376)
T ss_pred CeEECCc------CCCCCcccceEEEEC-CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--------CCCC
Confidence 5888764 55 489999998888 79999999864 1346899999999999999862 1467
Q ss_pred CcceeEEEE-eCCEEEEEccccCC----------------------------------CCCCcEEEEECCCCeEEEEecC
Q 010770 76 PRAFHIAVA-IDCHMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSF 120 (501)
Q Consensus 76 ~R~~h~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~W~~~~~~ 120 (501)
+|.+|++++ .+++||++||.+.. ...+++++||+.+++|+.+.+
T Consensus 128 ~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~- 206 (376)
T PRK14131 128 GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE- 206 (376)
T ss_pred cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-
Confidence 778888777 79999999997531 124789999999999999874
Q ss_pred CCCCC-cCCccEEEEEcCcEEEEEecCCCCc-ccccEE--EEECCCCceEEcccCCCCCCCCcc--------eeEEEeCC
Q 010770 121 GDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVY--VLDTISLEWMQLPVTGSVPPPRCG--------HTATMVEK 188 (501)
Q Consensus 121 ~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~--~yd~~t~~W~~~~~~~~~p~~r~~--------~~~~~~~~ 188 (501)
+|. +|..|+++.+++ +|||+||..... ....++ .||+.+++|+.++ ++|.+|.+ +.++++++
T Consensus 207 --~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~ 280 (376)
T PRK14131 207 --SPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNG 280 (376)
T ss_pred --CCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECC
Confidence 775 677777777754 999999975432 234444 4577899999998 77776642 33566799
Q ss_pred EEEEEcccCCCCCcc----------cccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCC
Q 010770 189 RLLIYGGRGGGGPIM----------GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (501)
Q Consensus 189 ~lyv~GG~~~~~~~~----------~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~ 258 (501)
+|||+||........ ..+-....+++||+++++|+.+. .+|.+|..++++..+++|||+||....+
T Consensus 281 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~~iyv~GG~~~~~- 356 (376)
T PRK14131 281 VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNNGVLLIGGETAGG- 356 (376)
T ss_pred EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCCEEEEEcCCCCCC-
Confidence 999999986432110 00111235789999999999887 7899999999999999999999976532
Q ss_pred CcccccccCeEEEEEcCCCceEE
Q 010770 259 LSRYDIYYNDTIILDRLSAQWKR 281 (501)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~ 281 (501)
...++|++|++..+.++.
T Consensus 357 -----~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 357 -----KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred -----cEeeeEEEEEEcCCEEEE
Confidence 367899999998887764
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.1e-31 Score=278.36 Aligned_cols=211 Identities=16% Similarity=0.230 Sum_probs=183.9
Q ss_pred EEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECC
Q 010770 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (501)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 161 (501)
.+..++.||++||.++....+++++||+.+++|..+++ ||.+|..+++++++ ++||++||.+.. +++++||+.
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~-~~iYviGG~~~~---~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP---MNSPRLYASGVPAN-NKLYVVGGLPNP---TSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC---CCchhhcceEEEEC-CEEEEECCcCCC---CceEEEECC
Confidence 34589999999998776677899999999999999985 99999999998885 599999997532 569999999
Q ss_pred CCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEE
Q 010770 162 SLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT 241 (501)
Q Consensus 162 t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~ 241 (501)
+++|+.++ +||.+|.+|++++++++||++||.... .+.+++|||.+++|+.++ ++|.+|..|+++
T Consensus 340 ~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---------~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~ 404 (480)
T PHA02790 340 DAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---------DTTTEYLLPNHDQWQFGP---STYYPHYKSCAL 404 (480)
T ss_pred CCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---------CccEEEEeCCCCEEEeCC---CCCCccccceEE
Confidence 99999998 899999999999999999999997532 256889999999999988 789999999999
Q ss_pred EeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCCCccCcEEE
Q 010770 242 SGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWW 321 (501)
Q Consensus 242 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~ 321 (501)
+.+++||++||. +.+||+.+++|+.++++ |.+|..+++++++++||++||.++....+.
T Consensus 405 ~~~~~IYv~GG~---------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~--- 463 (480)
T PHA02790 405 VFGRRLFLVGRN---------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDT--- 463 (480)
T ss_pred EECCEEEEECCc---------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccce---
Confidence 999999999973 46899999999999875 558999999999999999999875444444
Q ss_pred ecCCCCccccceecC
Q 010770 322 LVPEEDPIAKRYTES 336 (501)
Q Consensus 322 ~~~~~d~~~~~w~~~ 336 (501)
.++|||.+++|+..
T Consensus 464 -ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 464 -IEVYNNRTYSWNIW 477 (480)
T ss_pred -EEEEECCCCeEEec
Confidence 55788999999865
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=4.5e-31 Score=251.49 Aligned_cols=256 Identities=23% Similarity=0.436 Sum_probs=209.6
Q ss_pred CCCCCcceeEEEEe--CCEEEEEcccc--C--CCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEec
Q 010770 72 VGPGPRAFHIAVAI--DCHMFIFGGRF--G--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG 145 (501)
Q Consensus 72 ~~p~~R~~h~~~~~--~~~iyv~GG~~--~--~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG 145 (501)
++|+||+..++++. .+.|++|||.- + ...+++++.||+.+++|.++.. ...|.+|..|+++++..+.+|+|||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEecc
Confidence 67999999988776 45899999963 2 2347999999999999999875 4688999999999998779999999
Q ss_pred CCCC------cccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCC
Q 010770 146 WDGK------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET 219 (501)
Q Consensus 146 ~~~~------~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t 219 (501)
--.. -...++|.||..+++|+++...| -|.+|.||-|++..++|+||||+.... .+...+|++++||+++
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~n---r~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSN---RDYIYYNDVYAFDLDT 216 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCC---CceEEeeeeEEEeccc
Confidence 5322 25689999999999999998665 799999999999999999999997653 3444567777779999
Q ss_pred CceEEeecCCCCCCCceeeEEEEe-CCEEEEEcCCCCCCC--CcccccccCeEEEEEcCC-----CceEEcccCCCCCCc
Q 010770 220 PGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLS-----AQWKRLPIGNEPPPA 291 (501)
Q Consensus 220 ~~W~~~~~~g~~p~~r~~~s~~~~-~~~i~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~-----~~W~~v~~~~~~p~~ 291 (501)
-+|+.+.++|.-|.+|.+|.+.+. .+.|||+||+...-. ........+|+|.+++.. -.|+++.+.+..|.|
T Consensus 217 ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp 296 (521)
T KOG1230|consen 217 YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP 296 (521)
T ss_pred eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence 999999998889999999999887 899999999865321 112235678999999988 789999999999999
Q ss_pred ccceEEEEEC-CEEEEEccCCCC---------CccCcEEEecCCCCccccceecC
Q 010770 292 RAYHSMTCLG-SLYLLFGGFDGK---------STFGDIWWLVPEEDPIAKRYTES 336 (501)
Q Consensus 292 r~~~~~~~~~-~~iyv~GG~~~~---------~~~~d~w~~~~~~d~~~~~w~~~ 336 (501)
|.++++++.. ++-|.|||.... ..++|+|.|++ ..++|+..
T Consensus 297 Rsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdl----t~nrW~~~ 347 (521)
T KOG1230|consen 297 RSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDL----TRNRWSEG 347 (521)
T ss_pred CCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheec----ccchhhHh
Confidence 9999998875 599999996541 15677765554 47777654
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.2e-29 Score=245.14 Aligned_cols=242 Identities=26% Similarity=0.412 Sum_probs=203.4
Q ss_pred CCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEE
Q 010770 55 NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASA 134 (501)
Q Consensus 55 t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~ 134 (501)
--.|..+..... +.|.||.+|-++++.+-|.||||-++ ...+++++||..+|+|......|++|.+...|.++.
T Consensus 16 ~~rWrrV~~~tG-----PvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 16 VVRWRRVQQSTG-----PVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred ccceEEEecccC-----CCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 347999886643 67999999999999999999999765 467889999999999999999999999999999988
Q ss_pred EcCcEEEEEecCCC-CcccccEEEEECCCCceEEccc----CCCCCCCCcceeEEEeCCEEEEEcccCCCCCc--ccccc
Q 010770 135 IGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPV----TGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI--MGDLW 207 (501)
Q Consensus 135 ~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~----~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~--~~d~~ 207 (501)
.+. +||+|||.-. ..+.|++|.+....-.|+++.+ .|.+|.||.||+..+++++-|+|||...+... .|-..
T Consensus 90 dGt-rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 90 DGT-RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred cCc-eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccch
Confidence 877 9999999754 4688999888888888988864 56789999999999999999999998654321 11123
Q ss_pred cccccccccCCC----CceEEeecCCCCCCCceeeEEEEe------CCEEEEEcCCCCCCCCcccccccCeEEEEEcCCC
Q 010770 208 ALKGLIEEENET----PGWTQLKLPGQAPSSRCGHTITSG------GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (501)
Q Consensus 208 ~l~~~~~Yd~~t----~~W~~~~~~g~~p~~r~~~s~~~~------~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (501)
.|++++..++.. -.|......|..|.+|..|+++++ ..++||+||+.+ ..+.|+|.+|+++.
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--------~RLgDLW~Ldl~Tl 240 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--------CRLGDLWTLDLDTL 240 (830)
T ss_pred hhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--------ccccceeEEeccee
Confidence 344444445552 359888888999999999999985 348999999986 46799999999999
Q ss_pred ceEEcccCCCCCCcccceEEEEECCEEEEEccCC
Q 010770 278 QWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (501)
Q Consensus 278 ~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 311 (501)
.|.+....+.+|.||.-|+++.+++++|||||+-
T Consensus 241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred ecccccccCCCCCCcccccceeecceeEEeccee
Confidence 9999999888999999999999999999999975
No 27
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.96 E-value=1e-30 Score=253.87 Aligned_cols=393 Identities=21% Similarity=0.266 Sum_probs=273.7
Q ss_pred cceEEeeeCCCCC----CCCCCCcCcEEEEE-CCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCC
Q 010770 2 HYWVRASSSDFGG----TVPQPRSGHSAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (501)
Q Consensus 2 ~~W~~~~~~~~~g----~~P~~R~~h~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~ 76 (501)
.+|.++.+++..+ ..|.+|+||+|+.. +++.||++|||++.+.+.|+|.|+...+.|..+...+ ..|..
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t------~~PG~ 312 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT------EGPGA 312 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC------CCCcc
Confidence 4799999877554 58999999999984 6679999999999999999999999999999987654 37999
Q ss_pred cceeEEEEeCC--EEEEEccccCC------CCCCcEEEEECCCCeEEEEec---CCCCCCcCCccEEEEEcC-cEEEEEe
Q 010770 77 RAFHIAVAIDC--HMFIFGGRFGS------RRLGDFWVLDTDIWQWSELTS---FGDLPSPRDFAAASAIGN-RKIVMYG 144 (501)
Q Consensus 77 R~~h~~~~~~~--~iyv~GG~~~~------~~~~~~~~yd~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~-~~iyv~G 144 (501)
|++|-||..-. ++|+.|-+-+. ..-+|+|+||.+++.|..+.. ..+.|...+.|+|++.++ +.|||+|
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEec
Confidence 99999999855 89999988542 234689999999999999865 235799999999999976 3599999
Q ss_pred cCCC--C-cccccEEEEECCCCceEEcccCCC-------CCCCCcceeEEEe--CCEEEEEcccCCCCCccccccccccc
Q 010770 145 GWDG--K-KWLSDVYVLDTISLEWMQLPVTGS-------VPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGL 212 (501)
Q Consensus 145 G~~~--~-~~~~~~~~yd~~t~~W~~~~~~~~-------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~ 212 (501)
|..- + ..+..+|.||.....|..++..-. ....|.+|+|-.+ ++++|++||..... .++.+
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-------El~L~ 465 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-------ELNLF 465 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-------EEeeh
Confidence 9743 2 468899999999999998864211 1235888888776 56899999987654 35666
Q ss_pred ccccCCCCceEEeec-----CCCCCCCceeeEEEE--eCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccC
Q 010770 213 IEEENETPGWTQLKL-----PGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (501)
Q Consensus 213 ~~Yd~~t~~W~~~~~-----~g~~p~~r~~~s~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (501)
..||+...+=..++. ....|.+-+...+.. ..+.|.+.-|.+.... .++....+.+|+|++.++.|.++...
T Consensus 466 f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~-~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 466 FSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKE-KREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred hcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhcc-CccccccCcEEEEEecccchhhHhhh
Confidence 777665544333220 111233322222222 5568888888776442 22345679999999999999987543
Q ss_pred CC---------------------CCCcccceEEEEE--CCEEEEEccCCCCC-----ccCcEEEecCCCCccccceecCC
Q 010770 286 NE---------------------PPPARAYHSMTCL--GSLYLLFGGFDGKS-----TFGDIWWLVPEEDPIAKRYTESP 337 (501)
Q Consensus 286 ~~---------------------~p~~r~~~~~~~~--~~~iyv~GG~~~~~-----~~~d~w~~~~~~d~~~~~w~~~~ 337 (501)
.. .|.+|+.|+.++. -.-+|++||..+.. .++|+|.++++........+.+
T Consensus 545 ~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~rp~~~~~l~~~- 623 (723)
T KOG2437|consen 545 DQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICRPSKDYLLRHC- 623 (723)
T ss_pred HHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhcccchhhhhhcc-
Confidence 11 2678888887643 56789999988754 5788999888744444444444
Q ss_pred CCCCCCCCcccccccccceeeccccccchhhhhhhhhcCceecccCCCcccCCccchHHHHHHHhhhhcCccc--CCCcc
Q 010770 338 PKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPGLQIMDELEDEEFLELASRLMGAGVF--SNGQV 415 (501)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~--~~~~~ 415 (501)
+....++.+.+++-...+.+..++ + -......+.+ .....+||..+|+-|+...+- ..+..
T Consensus 624 -------~~~~~~HrF~E~~~~~~l~a~~yl---q--~~~~~~~D~s-----~~~~~~e~~lla~~l~~sG~d~~K~~~~ 686 (723)
T KOG2437|consen 624 -------KYLIRKHRFEEKAQVDPLSALKYL---Q--NDLYITVDHS-----DPEETKEFQLLASALFKSGSDFTKLGFS 686 (723)
T ss_pred -------hhhhHHHHHHHHhhhhhHHHhHhh---h--hcceeccccC-----chhhhHHHHHHHHHHHhcCCchhhhhhh
Confidence 333344444444444444444444 3 3333445566 444458999999988875443 22333
Q ss_pred hhhhhhHHHHh
Q 010770 416 SRIQATQVLRD 426 (501)
Q Consensus 416 ~~~~~~~~~~~ 426 (501)
.|+..++.+.|
T Consensus 687 ~R~~t~~~~~D 697 (723)
T KOG2437|consen 687 DRDHTYAQRTD 697 (723)
T ss_pred hhHHHHHHHHH
Confidence 34444444444
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=1.5e-16 Score=150.94 Aligned_cols=277 Identities=20% Similarity=0.304 Sum_probs=198.1
Q ss_pred CCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcCC--CcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEE
Q 010770 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF 92 (501)
Q Consensus 15 ~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~ 92 (501)
+.|.+--+-+...+++ .+||-=|..+ ...++.|+.. ..|+.++.. +-.+|....+++++++||+|
T Consensus 32 dlPvg~KnG~Ga~ig~-~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~F--------pG~~rnqa~~a~~~~kLyvF 98 (381)
T COG3055 32 DLPVGFKNGAGALIGD-TVYVGLGSAG----TAFYVLDLKKPGKGWTKIADF--------PGGARNQAVAAVIGGKLYVF 98 (381)
T ss_pred CCCccccccccceecc-eEEEEeccCC----ccceehhhhcCCCCceEcccC--------CCcccccchheeeCCeEEEe
Confidence 3666666667788884 8888777433 3467777764 599999865 34679999999999999999
Q ss_pred ccccC-----CCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC------------------
Q 010770 93 GGRFG-----SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK------------------ 149 (501)
Q Consensus 93 GG~~~-----~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~------------------ 149 (501)
||... ...++++++||+.+++|.++.+ ..|....+++++...+.+||++||.+..
T Consensus 99 gG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 99 GGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred eccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 99853 2347899999999999999986 4677788888888877799999996420
Q ss_pred ----------------cccccEEEEECCCCceEEcccCCCCC-CCCcceeEEEeCCEEEEEcccCCCCCccccccccccc
Q 010770 150 ----------------KWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGL 212 (501)
Q Consensus 150 ----------------~~~~~~~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~ 212 (501)
.....+..|++.+++|+.+- ..| .++++.+.+.-++++.++-|.-..+-+....+..
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~--- 250 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQA--- 250 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccccceeEE---
Confidence 13456899999999999875 344 5677766655578899999987766433332222
Q ss_pred ccccCCCCceEEeecCCCCCCCc-------eeeEEEEeCCEEEEEcCCCCCCCCc------------ccccccCeEEEEE
Q 010770 213 IEEENETPGWTQLKLPGQAPSSR-------CGHTITSGGHYLLLFGGHGTGGWLS------------RYDIYYNDTIILD 273 (501)
Q Consensus 213 ~~Yd~~t~~W~~~~~~g~~p~~r-------~~~s~~~~~~~i~v~GG~~~~~~~~------------~~~~~~~~v~~yd 273 (501)
.+.-...+|..+. +.|.+. .++-.-..++.+.+.||..-.+... ....+.++||+||
T Consensus 251 -~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d 326 (381)
T COG3055 251 -DFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD 326 (381)
T ss_pred -EeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc
Confidence 2234566898886 333222 2222334778899999865433111 2235678899999
Q ss_pred cCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCCC-ccCcEEE
Q 010770 274 RLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKS-TFGDIWW 321 (501)
Q Consensus 274 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~d~w~ 321 (501)
.+.|+.+... |.++.+..++..++.+|++||..... .+.+++.
T Consensus 327 --~g~Wk~~GeL---p~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~ 370 (381)
T COG3055 327 --NGSWKIVGEL---PQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYS 370 (381)
T ss_pred --CCceeeeccc---CCCccceEEEecCCcEEEEccccCCCeeeeeEEE
Confidence 9999999985 45888888889999999999977543 4445443
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.71 E-value=8.3e-16 Score=145.92 Aligned_cols=243 Identities=22% Similarity=0.353 Sum_probs=172.4
Q ss_pred cceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCCC-----ccCCceEEEEcCCCcEEeceecCCCCCCCCCCCC
Q 010770 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDK-----RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (501)
Q Consensus 2 ~~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~ 76 (501)
..|+++. +|+| .+|-+..+++++ ++||+|||.... +..+++++|||.+++|.++.+. .|..
T Consensus 70 k~W~~~a--~FpG---~~rnqa~~a~~~-~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--------sP~g 135 (381)
T COG3055 70 KGWTKIA--DFPG---GARNQAVAAVIG-GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--------SPTG 135 (381)
T ss_pred CCceEcc--cCCC---cccccchheeeC-CeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--------cccc
Confidence 3688887 3433 578888888888 799999998643 3478999999999999999764 4677
Q ss_pred cceeEEEEeCC-EEEEEccccCC----------------------------------CCCCcEEEEECCCCeEEEEecCC
Q 010770 77 RAFHIAVAIDC-HMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSFG 121 (501)
Q Consensus 77 R~~h~~~~~~~-~iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~W~~~~~~~ 121 (501)
-.+++++.+++ +||++||.+.. ....+++.|+|.+++|+.+-.
T Consensus 136 l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~-- 213 (381)
T COG3055 136 LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE-- 213 (381)
T ss_pred cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--
Confidence 78899999988 99999997421 123568999999999998863
Q ss_pred CCCCcCCccEEEEEcCcEEEEEecCCCC-cccccEEEEEC--CCCceEEcccCCCCCCC-------CcceeEEEeCCEEE
Q 010770 122 DLPSPRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDT--ISLEWMQLPVTGSVPPP-------RCGHTATMVEKRLL 191 (501)
Q Consensus 122 ~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~--~t~~W~~~~~~~~~p~~-------r~~~~~~~~~~~ly 191 (501)
.|-.-...++++++++++.++-|.-.. -....++.++. ..-+|..++ ++|.+ ..++-.-..++.+.
T Consensus 214 -~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~l 289 (381)
T COG3055 214 -NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVL 289 (381)
T ss_pred -CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEE
Confidence 444444446677777788888885433 23444555554 467899986 44433 33444444578999
Q ss_pred EEcccCCCCC--------cc-----cccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCC
Q 010770 192 IYGGRGGGGP--------IM-----GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (501)
Q Consensus 192 v~GG~~~~~~--------~~-----~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~ 258 (501)
|.||....+. .. .--|. +.++.+| .+.|+.+. ++|.++....++..++.+|++||.+.++
T Consensus 290 v~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~-~~Vy~~d--~g~Wk~~G---eLp~~l~YG~s~~~nn~vl~IGGE~~~G- 362 (381)
T COG3055 290 VAGGANFPGALKAYKNGKFYAHEGLSKSWN-SEVYIFD--NGSWKIVG---ELPQGLAYGVSLSYNNKVLLIGGETSGG- 362 (381)
T ss_pred EecCCCChhHHHHHHhcccccccchhhhhh-ceEEEEc--CCceeeec---ccCCCccceEEEecCCcEEEEccccCCC-
Confidence 9999764321 10 01121 2344445 89999887 8999998888888999999999998766
Q ss_pred CcccccccCeEEEEEcCC
Q 010770 259 LSRYDIYYNDTIILDRLS 276 (501)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~ 276 (501)
....+|+.+-.+.
T Consensus 363 -----ka~~~v~~l~~~g 375 (381)
T COG3055 363 -----KATTRVYSLSWDG 375 (381)
T ss_pred -----eeeeeEEEEEEcC
Confidence 4555666655443
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.60 E-value=5.5e-16 Score=151.87 Aligned_cols=203 Identities=18% Similarity=0.269 Sum_probs=154.5
Q ss_pred CCCeEEEEecCC-------CCCCcCCccEEEEE-cCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcce
Q 010770 110 DIWQWSELTSFG-------DLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (501)
Q Consensus 110 ~t~~W~~~~~~~-------~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 181 (501)
-+..|.++++.. ..|.-|.+|+|+.. ++++||++||+++...+.++|.|+...+.|+.+...+..|..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 356799887754 56889999999985 4569999999999999999999999999999999888899999999
Q ss_pred eEEEeC--CEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCC---CCCCCceeeEEEEeCCE--EEEEcCCC
Q 010770 182 TATMVE--KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG---QAPSSRCGHTITSGGHY--LLLFGGHG 254 (501)
Q Consensus 182 ~~~~~~--~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g---~~p~~r~~~s~~~~~~~--i~v~GG~~ 254 (501)
-|+... .+||+.|-+-..... +..-.-+++++||.+++.|..++... .-|...+.|.+++.+++ +|||||..
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r-~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVR-NSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccc-cccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 999884 499999976543211 11111245566699999999987321 25788899999998877 99999986
Q ss_pred CCCCCcccccccCeEEEEEcCCCceEEcccCCC-------CCCcccceEEEEE--CCEEEEEccCCCCCccC
Q 010770 255 TGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNE-------PPPARAYHSMTCL--GSLYLLFGGFDGKSTFG 317 (501)
Q Consensus 255 ~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~-------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 317 (501)
... ....+..+|.||.....|..+..... --..|.+|++-.. +..+|+|||......++
T Consensus 396 ~~~----~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~ 463 (723)
T KOG2437|consen 396 LTC----NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELN 463 (723)
T ss_pred ccC----CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEe
Confidence 533 12356789999999999987654211 1236777776544 67899999977655443
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.15 E-value=8.2e-11 Score=82.75 Aligned_cols=49 Identities=31% Similarity=0.599 Sum_probs=45.5
Q ss_pred CcceeEEEEeCCEEEEEccccC-CCCCCcEEEEECCCCeEEEEecCCCCCCcC
Q 010770 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPR 127 (501)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r 127 (501)
||.+|++++++++|||+||..+ ...++++++||+.+++|+++++ ||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 6899999999999999999988 7889999999999999999985 88886
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.09 E-value=2.7e-10 Score=80.10 Aligned_cols=49 Identities=45% Similarity=0.769 Sum_probs=44.3
Q ss_pred CCcCcEEEEECCcEEEEEcccCC-CccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCc
Q 010770 19 PRSGHSAVNIGKSKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPR 77 (501)
Q Consensus 19 ~R~~h~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R 77 (501)
||.+|++++++ ++|||+||..+ ...++++++||+.+++|+.++ ++|.||
T Consensus 1 pR~~~s~v~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---------~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVG-GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---------PMPTPR 50 (50)
T ss_pred CCccCEEEEEC-CEEEEECCCCCCCCccccEEEEcCCCCcEEECC---------CCCCCC
Confidence 69999999999 79999999988 788999999999999999987 567776
No 33
>PLN02772 guanylate kinase
Probab=98.97 E-value=4.3e-09 Score=104.46 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCCCcceeEEEEeCCEEEEEccccCCC-CCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcc
Q 010770 73 GPGPRAFHIAVAIDCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW 151 (501)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~ 151 (501)
.+.++.+|+++.+++++|||||.++.. ..+.+++||..+++|......|..|.+|.+|++|++++++|+|+++-.+.
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~-- 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP-- 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--
Confidence 456899999999999999999988754 78899999999999999999999999999999999988899999875544
Q ss_pred cccEEEEECCCC
Q 010770 152 LSDVYVLDTISL 163 (501)
Q Consensus 152 ~~~~~~yd~~t~ 163 (501)
-.++|.+.+.|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 377898887764
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.89 E-value=3.8e-09 Score=73.81 Aligned_cols=47 Identities=40% Similarity=0.836 Sum_probs=42.3
Q ss_pred CCEEEEEcccc--CCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEE
Q 010770 86 DCHMFIFGGRF--GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI 135 (501)
Q Consensus 86 ~~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 135 (501)
+++||||||.+ ....++++|+||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 5777999999999999999994 69999999999874
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.88 E-value=3.6e-09 Score=73.27 Aligned_cols=44 Identities=30% Similarity=0.551 Sum_probs=40.8
Q ss_pred CcceeEEEEeCCEEEEEccccC-CCCCCcEEEEECCCCeEEEEec
Q 010770 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS 119 (501)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~ 119 (501)
||.+|++++++++|||+||.+. ...++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 6899999999999999999998 7789999999999999999985
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.85 E-value=3.4e-09 Score=74.12 Aligned_cols=44 Identities=41% Similarity=0.759 Sum_probs=30.3
Q ss_pred CCcCcEEEEECCcEEEEEcccCCC-ccCCceEEEEcCCCcEEece
Q 010770 19 PRSGHSAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLWFQPE 62 (501)
Q Consensus 19 ~R~~h~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~l~ 62 (501)
||.+|+++.+++++||||||.... ..++++|+||+.+++|+.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 699999999977899999999875 68999999999999999984
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.85 E-value=6.7e-09 Score=72.55 Aligned_cols=46 Identities=43% Similarity=0.936 Sum_probs=41.7
Q ss_pred cEEEEEecCC--CCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEe
Q 010770 138 RKIVMYGGWD--GKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (501)
Q Consensus 138 ~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 186 (501)
++||||||.+ ....++++|+||+.+++|+++. ++|.+|++|+++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 4899999998 5678999999999999999995 89999999999864
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.82 E-value=1e-08 Score=71.56 Aligned_cols=44 Identities=43% Similarity=0.833 Sum_probs=40.3
Q ss_pred CcceeEEEEeCCEEEEEccc---cCCCCCCcEEEEECCCCeEEEEec
Q 010770 76 PRAFHIAVAIDCHMFIFGGR---FGSRRLGDFWVLDTDIWQWSELTS 119 (501)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~t~~W~~~~~ 119 (501)
||++|++++++++||||||+ ......+++++||+.+++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 456778999999999999999875
No 39
>PLN02772 guanylate kinase
Probab=98.77 E-value=3.8e-08 Score=97.85 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=75.7
Q ss_pred CCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEe-CCEEEEEc
Q 010770 173 SVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFG 251 (501)
Q Consensus 173 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~-~~~i~v~G 251 (501)
.-+.++.+++++.+++++||+||....+... +.+++||..+.+|......|..|.+|.+|+++++ +++|+|++
T Consensus 20 ~~~~~~~~~tav~igdk~yv~GG~~d~~~~~------~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~ 93 (398)
T PLN02772 20 FGVKPKNRETSVTIGDKTYVIGGNHEGNTLS------IGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIK 93 (398)
T ss_pred ccCCCCCcceeEEECCEEEEEcccCCCcccc------ceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEe
Confidence 4456889999999999999999987754343 4555669999999999999999999999999986 57999999
Q ss_pred CCCCCCCCcccccccCeEEEEEcCCCce
Q 010770 252 GHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (501)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~~W 279 (501)
+.... ..++|.+.+++.--
T Consensus 94 ~~~~~---------~~~~w~l~~~t~~~ 112 (398)
T PLN02772 94 KGSAP---------DDSIWFLEVDTPFV 112 (398)
T ss_pred CCCCC---------ccceEEEEcCCHHH
Confidence 87653 27899998877543
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.77 E-value=7.6e-09 Score=72.31 Aligned_cols=47 Identities=36% Similarity=0.712 Sum_probs=31.3
Q ss_pred cCCccEEEEEcCcEEEEEecCCCC-cccccEEEEECCCCceEEcccCCCCC
Q 010770 126 PRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPVTGSVP 175 (501)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~p 175 (501)
||.+|+++.+++++||||||.+.. ..++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 689999999977799999999876 58999999999999999995 665
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.71 E-value=3.3e-08 Score=68.98 Aligned_cols=44 Identities=39% Similarity=0.625 Sum_probs=39.2
Q ss_pred CCcCcEEEEECCcEEEEEccc---CCCccCCceEEEEcCCCcEEecee
Q 010770 19 PRSGHSAVNIGKSKVVVFGGL---VDKRFLSDVVVYDIDNKLWFQPEC 63 (501)
Q Consensus 19 ~R~~h~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~t~~W~~l~~ 63 (501)
||.+|++++++ ++||||||. ......+++++||+.+++|+.++.
T Consensus 1 ~r~~hs~~~~~-~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLD-GKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEEC-CEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 69999999998 799999999 456678999999999999999863
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.67 E-value=2.9e-08 Score=68.65 Aligned_cols=43 Identities=42% Similarity=0.677 Sum_probs=38.6
Q ss_pred cCCccEEEEEcCcEEEEEecCCC-CcccccEEEEECCCCceEEcc
Q 010770 126 PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLP 169 (501)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~~ 169 (501)
+|..|+++++++ +||++||.+. ....+++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 578899999965 9999999988 678999999999999999998
No 43
>PF13854 Kelch_5: Kelch motif
Probab=98.63 E-value=7.2e-08 Score=64.76 Aligned_cols=40 Identities=38% Similarity=0.794 Sum_probs=35.6
Q ss_pred CCCCCcCcEEEEECCcEEEEEcccC--CCccCCceEEEEcCCC
Q 010770 16 VPQPRSGHSAVNIGKSKVVVFGGLV--DKRFLSDVVVYDIDNK 56 (501)
Q Consensus 16 ~P~~R~~h~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~t~ 56 (501)
+|.+|.+|++++++ ++||||||.. ....++|+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~-~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-NNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEEC-CEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 48999999999999 7999999998 4677899999999763
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.62 E-value=7.9e-08 Score=64.57 Aligned_cols=40 Identities=35% Similarity=0.572 Sum_probs=35.9
Q ss_pred CCCCcceeEEEEeCCEEEEEcccc--CCCCCCcEEEEECCCC
Q 010770 73 GPGPRAFHIAVAIDCHMFIFGGRF--GSRRLGDFWVLDTDIW 112 (501)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t~ 112 (501)
+|.+|..|++++++++||||||.+ ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 388999999999999999999999 3677999999999863
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.55 E-value=7e-06 Score=77.11 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=103.2
Q ss_pred EEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCC----CceEEcccCCCCCCCCc
Q 010770 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS----LEWMQLPVTGSVPPPRC 179 (501)
Q Consensus 104 ~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~~~~~~~p~~r~ 179 (501)
.-.||+.+++++.+. .+.-.+..+.+.+.||++++.||.... ...+..|++.+ ..|.+... .|..+|-
T Consensus 48 s~~yD~~tn~~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT----VQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEecc----CCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence 467999999999886 444445555566789999999998542 34577788765 67988752 4889999
Q ss_pred ceeEEEe-CCEEEEEcccCCCCCcccccccccccccccCC-----CCceEEeec-CCCCCCCceeeEEEEeCCEEEEEcC
Q 010770 180 GHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-----TPGWTQLKL-PGQAPSSRCGHTITSGGHYLLLFGG 252 (501)
Q Consensus 180 ~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~-----t~~W~~~~~-~g~~p~~r~~~s~~~~~~~i~v~GG 252 (501)
..+++.+ +++++|+||.... ..+.+... ...|..+.. ....+...+-+..+.-+++||+++.
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~-----------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP-----------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred cccceECCCCCEEEEeCcCCC-----------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 9998888 7899999998732 12222221 122222221 1123455566666778899999997
Q ss_pred CCCCCCCcccccccCeEEEEEcCCCce-EEcccCCC
Q 010770 253 HGTGGWLSRYDIYYNDTIILDRLSAQW-KRLPIGNE 287 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~v~~~~~ 287 (501)
.. -++||..++++ +.++..+.
T Consensus 189 ~~--------------s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 189 RG--------------SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred CC--------------cEEEeCCCCeEEeeCCCCCC
Confidence 43 47899999987 67777643
No 46
>smart00612 Kelch Kelch domain.
Probab=98.53 E-value=1.4e-07 Score=64.91 Aligned_cols=47 Identities=40% Similarity=0.777 Sum_probs=42.0
Q ss_pred EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC
Q 010770 139 KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (501)
Q Consensus 139 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~ 188 (501)
+||++||.......+++++||+.+++|+.++ +||.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999977677899999999999999998 8999999999988764
No 47
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.47 E-value=5.2e-06 Score=77.33 Aligned_cols=133 Identities=22% Similarity=0.340 Sum_probs=89.0
Q ss_pred eeeCCCCCCCCCCCcCcEEEEE---CCcEEEEEcccCC---C-----------ccCCceEEEEcCCCcEEeceecCCCCC
Q 010770 7 ASSSDFGGTVPQPRSGHSAVNI---GKSKVVVFGGLVD---K-----------RFLSDVVVYDIDNKLWFQPECTGNGSN 69 (501)
Q Consensus 7 ~~~~~~~g~~P~~R~~h~~~~~---~~~~iyv~GG~~~---~-----------~~~~~v~~yd~~t~~W~~l~~~~~~~~ 69 (501)
...+++.|+.|.+|+||++.++ ++..+++|||..- + .....|+.+|+.-+..+.-+..
T Consensus 75 C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp----- 149 (337)
T PF03089_consen 75 CQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP----- 149 (337)
T ss_pred EecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-----
Confidence 4557888999999999999886 5567999999752 1 2345688899988877664321
Q ss_pred CCCCCCCcceeEEEEeCCEEEEEccccC--CCCCCcEEEEECC---CCeEEEEecCCCCCCcCCccEEEE--EcCcEEEE
Q 010770 70 GQVGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTD---IWQWSELTSFGDLPSPRDFAAASA--IGNRKIVM 142 (501)
Q Consensus 70 ~~~~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~---t~~W~~~~~~~~~p~~r~~~~~~~--~~~~~iyv 142 (501)
.+...-++|.+.+-++.||++||..- +..-..+++..++ ..-...... ++......+|.+ .+.....|
T Consensus 150 --El~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iI 224 (337)
T PF03089_consen 150 --ELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYII 224 (337)
T ss_pred --hhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEE
Confidence 34567789999999999999999853 3333445555432 112222222 445554444444 34558889
Q ss_pred EecCCCC
Q 010770 143 YGGWDGK 149 (501)
Q Consensus 143 ~GG~~~~ 149 (501)
+||+..+
T Consensus 225 lGGY~sd 231 (337)
T PF03089_consen 225 LGGYQSD 231 (337)
T ss_pred Eeccccc
Confidence 9998654
No 48
>smart00612 Kelch Kelch domain.
Probab=98.46 E-value=2.4e-07 Score=63.81 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=41.0
Q ss_pred EEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC
Q 010770 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC 87 (501)
Q Consensus 32 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~ 87 (501)
+||++||..+....+++++||+.+++|..++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---------~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---------SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---------CCCCccccceEEEeCC
Confidence 4899999987677899999999999999875 5789999999988764
No 49
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.32 E-value=0.00056 Score=64.08 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCCCCcceeEEEE---eCC---EEEEEccccCC-CCCCcEEEEECCCCe--------EEEEecCCCCCCcCCccEEEEE-
Q 010770 72 VGPGPRAFHIAVA---IDC---HMFIFGGRFGS-RRLGDFWVLDTDIWQ--------WSELTSFGDLPSPRDFAAASAI- 135 (501)
Q Consensus 72 ~~p~~R~~h~~~~---~~~---~iyv~GG~~~~-~~~~~~~~yd~~t~~--------W~~~~~~~~~p~~r~~~~~~~~- 135 (501)
-+|..|.-..+.. .++ .-+|.||++++ ...+.+|+...++.. ..+....|++|.+|++|++.++
T Consensus 18 YLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~ 97 (337)
T PF03089_consen 18 YLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH 97 (337)
T ss_pred cCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence 3455565444433 122 34567999874 446678887765433 2333446899999999999887
Q ss_pred --cCcEEEEEecCCCC--------------cccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCC
Q 010770 136 --GNRKIVMYGGWDGK--------------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGG 199 (501)
Q Consensus 136 --~~~~iyv~GG~~~~--------------~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 199 (501)
++....+|||+.-- .+...++.+|+.-+-.+.-..+ .+..+...|.+..-++.+|++||..-.
T Consensus 98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEcc
Confidence 34478899997421 1345578888877666544211 344556667777779999999997654
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.30 E-value=0.00027 Score=66.79 Aligned_cols=201 Identities=12% Similarity=0.066 Sum_probs=111.0
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCC-CCccee-EEEEe----CC-EEEEEccccCCCCCCcEEEEECCCCeEEEEe
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGP-GPRAFH-IAVAI----DC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELT 118 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p-~~R~~h-~~~~~----~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 118 (501)
..+.++||.|++|..++... .+ .....+ .+... ++ +|..+...........+++|+..++.|+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~-------~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPK-------SRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCC-------CcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccc
Confidence 56999999999999986321 11 001111 11112 22 4555543322223457899999999999987
Q ss_pred cCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEE-cccCCCCCCCC----cceeEEEeCCEEEEE
Q 010770 119 SFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPR----CGHTATMVEKRLLIY 193 (501)
Q Consensus 119 ~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~p~~r----~~~~~~~~~~~lyv~ 193 (501)
.. .+........+.+ +|.+|-+...........+.+||+.+.+|.. ++ +|..+ ....++..+|+|.++
T Consensus 87 ~~--~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v 159 (230)
T TIGR01640 87 CS--PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVL 159 (230)
T ss_pred cC--CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEE
Confidence 42 2221112224445 6688888754322212268999999999995 64 33322 234566678998887
Q ss_pred cccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCce----eeEEEEeCCEEEEEcCCCCCCCCcccccccCeE
Q 010770 194 GGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRC----GHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (501)
Q Consensus 194 GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~----~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v 269 (501)
....... .-++|.++ |-....|+++-.-...+.+.. ....+..+++|++.... ..+ .-+
T Consensus 160 ~~~~~~~--~~~IWvl~-----d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~---------~~~ 222 (230)
T TIGR01640 160 KQKKDTN--NFDLWVLN-----DAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP---------FYI 222 (230)
T ss_pred EecCCCC--cEEEEEEC-----CCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc---------eEE
Confidence 7543211 13567664 233456987542111111111 12344567888887653 100 137
Q ss_pred EEEEcCCC
Q 010770 270 IILDRLSA 277 (501)
Q Consensus 270 ~~yd~~~~ 277 (501)
..||+.++
T Consensus 223 ~~y~~~~~ 230 (230)
T TIGR01640 223 FYYNVGEN 230 (230)
T ss_pred EEEeccCC
Confidence 88888764
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.25 E-value=5.3e-05 Score=71.27 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=95.5
Q ss_pred eEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccCCCCCCcEEEEECCC----CeEEEEecCCC
Q 010770 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDI----WQWSELTSFGD 122 (501)
Q Consensus 48 v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~~~~~~ 122 (501)
--.||+.+++++.+... .--.|.+.+.+ ++.+.+.||..+. ...+-.|++.+ ..|.+... .
T Consensus 48 s~~yD~~tn~~rpl~v~----------td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~--~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----------TDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPN--D 113 (243)
T ss_pred EEEEecCCCcEEeccCC----------CCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcc--c
Confidence 45699999999998632 22344443333 7899999998653 34577788765 67988764 4
Q ss_pred CCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECC-----CCceEEcccC-CCCCCCCcceeEEEeCCEEEEEccc
Q 010770 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-----SLEWMQLPVT-GSVPPPRCGHTATMVEKRLLIYGGR 196 (501)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-----t~~W~~~~~~-~~~p~~r~~~~~~~~~~~lyv~GG~ 196 (501)
|..+|...+++.+.||+++|+||.... ..+.+... ...|..+... ...+...+-+..+.-+++||+++..
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 889999999999999999999998622 12222221 1223222211 1223334445555558999999874
Q ss_pred CCCCCcccccccccccccccCCCCce-EEee
Q 010770 197 GGGGPIMGDLWALKGLIEEENETPGW-TQLK 226 (501)
Q Consensus 197 ~~~~~~~~d~~~l~~~~~Yd~~t~~W-~~~~ 226 (501)
. ...||..++++ +.++
T Consensus 190 ~--------------s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 190 G--------------SIIYDYKTNTVVRTLP 206 (243)
T ss_pred C--------------cEEEeCCCCeEEeeCC
Confidence 2 34569999977 5555
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.97 E-value=0.0018 Score=61.11 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=106.5
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCcc-EEEEE----cCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCC
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFA-AASAI----GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPP 176 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~-~~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~ 176 (501)
..+.++||.|.+|..+++....+.....+ .+..+ ++-+|..+...........+++|+..++.|+.+... .+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~--~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS--PPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--CCC
Confidence 47899999999999997421110001111 11111 122566665432222345689999999999998732 111
Q ss_pred CCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEE-eecCCCCCCCceeeEEEEeCCEEEEEcCCCC
Q 010770 177 PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-LKLPGQAPSSRCGHTITSGGHYLLLFGGHGT 255 (501)
Q Consensus 177 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~-~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~ 255 (501)
.......+.++|.||-+.-...... ...+..||+.+.+|.. ++.+............+..++++.++.....
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~-------~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNP-------DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCC-------cEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC
Confidence 1112226677999988874432110 1257789999999995 6532111111112345557788887765322
Q ss_pred CCCCcccccccCeEEEEE-cCCCceEEcccCCCCCCcccc----eEEEEECCEEEEEcc
Q 010770 256 GGWLSRYDIYYNDTIILD-RLSAQWKRLPIGNEPPPARAY----HSMTCLGSLYLLFGG 309 (501)
Q Consensus 256 ~~~~~~~~~~~~~v~~yd-~~~~~W~~v~~~~~~p~~r~~----~~~~~~~~~iyv~GG 309 (501)
. ..-++|+.+ -....|+++-..+.++.+... ...+..+++|++..+
T Consensus 165 ~--------~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 165 T--------NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred C--------CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 1 114789986 446679987655432222222 233455788888765
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.05 E-value=0.41 Score=49.10 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=113.1
Q ss_pred EECCcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcE
Q 010770 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (501)
Q Consensus 27 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (501)
++.+++||+.+.. ..+++||..++ .|+.-....... -.....++.....++.++.||+.+. ...+
T Consensus 66 vv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~v~v~~~------~g~l 132 (394)
T PRK11138 66 AVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGW-FSKNKSALLSGGVTVAGGKVYIGSE------KGQV 132 (394)
T ss_pred EEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccc-cccccccccccccEEECCEEEEEcC------CCEE
Confidence 3444799997653 35899998765 687532110000 0000011222334566888887532 2368
Q ss_pred EEEECCCC--eEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc--eEEcccCCCCCC--CC
Q 010770 105 WVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPP--PR 178 (501)
Q Consensus 105 ~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~p~--~r 178 (501)
+++|.+++ .|+.-.. ... .+..++.++.+|+..+ ...++.+|+.+++ |+.-. ..|. .+
T Consensus 133 ~ald~~tG~~~W~~~~~-----~~~--~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~---~~~~~~~~ 196 (394)
T PRK11138 133 YALNAEDGEVAWQTKVA-----GEA--LSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNL---DVPSLTLR 196 (394)
T ss_pred EEEECCCCCCcccccCC-----Cce--ecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecC---CCCccccc
Confidence 99998776 4865432 111 2222333558887533 2358999998776 87643 1121 12
Q ss_pred cceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC--ceEEeec--CCCCCCCc---eeeEEEEeCCEEEEEc
Q 010770 179 CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKL--PGQAPSSR---CGHTITSGGHYLLLFG 251 (501)
Q Consensus 179 ~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~--~W~~~~~--~g~~p~~r---~~~s~~~~~~~i~v~G 251 (501)
...+-++.++.+|+..+. ..+..+|+.+. .|+.-.. .+.....+ ...+.++.++.+|+.+
T Consensus 197 ~~~sP~v~~~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~ 263 (394)
T PRK11138 197 GESAPATAFGGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA 263 (394)
T ss_pred CCCCCEEECCEEEEEcCC-------------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence 223334456777664432 11223355544 4764220 00000001 1123345688888765
Q ss_pred CCCCCCCCcccccccCeEEEEEcCCCc--eEEcccCCCCCCcccceEEEEECCEEEEEc
Q 010770 252 GHGTGGWLSRYDIYYNDTIILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (501)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 308 (501)
.. ..++.+|+.+.+ |+.-... . ...+..++.+|+..
T Consensus 264 ~~-------------g~l~ald~~tG~~~W~~~~~~-----~---~~~~~~~~~vy~~~ 301 (394)
T PRK11138 264 YN-------------GNLVALDLRSGQIVWKREYGS-----V---NDFAVDGGRIYLVD 301 (394)
T ss_pred cC-------------CeEEEEECCCCCEEEeecCCC-----c---cCcEEECCEEEEEc
Confidence 21 358999988764 8753211 1 13456788888875
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.82 E-value=0.49 Score=48.54 Aligned_cols=208 Identities=15% Similarity=0.185 Sum_probs=111.5
Q ss_pred ECCcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEE
Q 010770 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (501)
Q Consensus 28 ~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (501)
+.+++||+.+. ...++++|..++ .|+.-. +.+ ...+.++.++.+|+..+ ...++
T Consensus 118 v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~-----------~~~-~~ssP~v~~~~v~v~~~------~g~l~ 173 (394)
T PRK11138 118 VAGGKVYIGSE------KGQVYALNAEDGEVAWQTKV-----------AGE-ALSRPVVSDGLVLVHTS------NGMLQ 173 (394)
T ss_pred EECCEEEEEcC------CCEEEEEECCCCCCcccccC-----------CCc-eecCCEEECCEEEEECC------CCEEE
Confidence 33478887443 235899998776 787632 111 12223456788887533 23689
Q ss_pred EEECCCCe--EEEEecCCCCCC--cCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc--eEEcccC--CCCCC-
Q 010770 106 VLDTDIWQ--WSELTSFGDLPS--PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVT--GSVPP- 176 (501)
Q Consensus 106 ~yd~~t~~--W~~~~~~~~~p~--~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~--~~~p~- 176 (501)
.+|+.+++ |+.-.. .|. .+...+.++. ++.+|+..+ ...++.+|..+.+ |+.-... +....
T Consensus 174 ald~~tG~~~W~~~~~---~~~~~~~~~~sP~v~-~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 174 ALNESDGAVKWTVNLD---VPSLTLRGESAPATA-FGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred EEEccCCCEeeeecCC---CCcccccCCCCCEEE-CCEEEEEcC------CCEEEEEEccCChhhheeccccCCCccchh
Confidence 99998775 766432 221 1112222333 446666433 2347888888765 7643210 00000
Q ss_pred --CCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC--ceEEeecCCCCCCCceeeEEEEeCCEEEEEcC
Q 010770 177 --PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGG 252 (501)
Q Consensus 177 --~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~--~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG 252 (501)
.....+.++.++.+|+.+.. ..+..+|+.+. .|+.-. +. + ...+..++.||+...
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~~-------------g~l~ald~~tG~~~W~~~~--~~-~-----~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAYN-------------GNLVALDLRSGQIVWKREY--GS-V-----NDFAVDGGRIYLVDQ 302 (394)
T ss_pred cccccCCCcEEECCEEEEEEcC-------------CeEEEEECCCCCEEEeecC--CC-c-----cCcEEECCEEEEEcC
Confidence 01123445568888886531 12345577665 476532 11 1 124567889998653
Q ss_pred CCCCCCCcccccccCeEEEEEcCCC--ceEEcccCCCCCCcccceEEEEECCEEEEEc
Q 010770 253 HGTGGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (501)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 308 (501)
. ..++.+|+.+. .|+.-.. ..+...+.++.++.+|+..
T Consensus 303 ~-------------g~l~ald~~tG~~~W~~~~~-----~~~~~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 303 N-------------DRVYALDTRGGVELWSQSDL-----LHRLLTAPVLYNGYLVVGD 342 (394)
T ss_pred C-------------CeEEEEECCCCcEEEccccc-----CCCcccCCEEECCEEEEEe
Confidence 2 45899998765 4754211 1223344456788887653
No 55
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.58 E-value=0.77 Score=46.65 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=99.3
Q ss_pred CceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCC--eEEEEecCC
Q 010770 46 SDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFG 121 (501)
Q Consensus 46 ~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~ 121 (501)
..++++|+.++ .|+.-... +....+...+.++.++.+|+ |.. ...+..+|+.++ .|+.-..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-------~~~~~~~~~sp~~~~~~v~~-~~~-----~g~v~ald~~tG~~~W~~~~~-- 219 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-------PALTLRGSASPVIADGGVLV-GFA-----GGKLVALDLQTGQPLWEQRVA-- 219 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-------CceeecCCCCCEEECCEEEE-ECC-----CCEEEEEEccCCCEeeeeccc--
Confidence 34888998866 57653211 00111222334555665554 332 135889998776 4754321
Q ss_pred CCCCcC-------CccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc--eEEcccCCCCCCCCcceeEEEeCCEEEE
Q 010770 122 DLPSPR-------DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLI 192 (501)
Q Consensus 122 ~~p~~r-------~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~lyv 192 (501)
.|... ...+...+.++.+|+.+. ...+++||+.+.+ |..-. + ...+.++.++++|+
T Consensus 220 -~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv 284 (377)
T TIGR03300 220 -LPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYV 284 (377)
T ss_pred -cCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEE
Confidence 11111 011222233558887543 2358999988765 76531 1 11234456888888
Q ss_pred EcccCCCCCcccccccccccccccCCCC--ceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEE
Q 010770 193 YGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (501)
Q Consensus 193 ~GG~~~~~~~~~d~~~l~~~~~Yd~~t~--~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 270 (501)
.... ..++.+|..+. .|+.-.. ..+...+.++.++.+|+.. . ...++
T Consensus 285 ~~~~-------------G~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~-~------------~G~l~ 333 (377)
T TIGR03300 285 TDAD-------------GVVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGD-F------------EGYLH 333 (377)
T ss_pred ECCC-------------CeEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEe-C------------CCEEE
Confidence 6421 22344466554 4654221 1112223345677777643 1 13588
Q ss_pred EEEcCCCc--eEEcccCCCCCCcccceEEEEECCEEEEEc
Q 010770 271 ILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (501)
Q Consensus 271 ~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 308 (501)
++|..+.+ |+ +... ......+.++.+++||+.+
T Consensus 334 ~~d~~tG~~~~~-~~~~----~~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 334 WLSREDGSFVAR-LKTD----GSGIASPPVVVGDGLLVQT 368 (377)
T ss_pred EEECCCCCEEEE-EEcC----CCccccCCEEECCEEEEEe
Confidence 88887653 32 2211 1123445567788877654
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.40 E-value=0.16 Score=50.91 Aligned_cols=120 Identities=23% Similarity=0.357 Sum_probs=75.5
Q ss_pred EECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCC----
Q 010770 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG---- 102 (501)
Q Consensus 27 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~---- 102 (501)
.+.+.+|+..+.. ....+||+.+..-...+ .++.+...-.++.++++||++..........
T Consensus 73 al~gskIv~~d~~------~~t~vyDt~t~av~~~P---------~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 73 ALHGSKIVAVDQS------GRTLVYDTDTRAVATGP---------RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDF 137 (342)
T ss_pred EecCCeEEEEcCC------CCeEEEECCCCeEeccC---------CCCCCCcceEEEEeCCeEEEeeccCccccccCccc
Confidence 3444788888664 34889999998776543 3445555567778899999998764322111
Q ss_pred -cEEEE--E--------CCCCeEEEEecCCCCCCcCCc-------cEEEEEcCcEEEE-EecCCCCcccccEEEEECCCC
Q 010770 103 -DFWVL--D--------TDIWQWSELTSFGDLPSPRDF-------AAASAIGNRKIVM-YGGWDGKKWLSDVYVLDTISL 163 (501)
Q Consensus 103 -~~~~y--d--------~~t~~W~~~~~~~~~p~~r~~-------~~~~~~~~~~iyv-~GG~~~~~~~~~~~~yd~~t~ 163 (501)
.++++ + .....|..+++ +|..+.. .+-+++++..|+| .-|.. ...|+||+.+.
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~ 209 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESH 209 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCc
Confidence 44444 3 34557888875 3333322 2223334558888 43321 34899999999
Q ss_pred ceEEcc
Q 010770 164 EWMQLP 169 (501)
Q Consensus 164 ~W~~~~ 169 (501)
+|++.-
T Consensus 210 ~W~~~G 215 (342)
T PF07893_consen 210 EWRKHG 215 (342)
T ss_pred ceeecc
Confidence 999884
No 57
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.32 E-value=0.049 Score=52.70 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=71.2
Q ss_pred cCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccCCC-CCCcEEEEECCCCeEEEEecC-
Q 010770 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSF- 120 (501)
Q Consensus 44 ~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~- 120 (501)
....++.||+.+.+|..+... -... -..+... +++||+.|-..-.. ....+-.||..+++|..+...
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---------i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~ 83 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---------ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGS 83 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---------ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcc
Confidence 467899999999999997521 1111 1233333 67888888665433 456789999999999988762
Q ss_pred -CCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcc
Q 010770 121 -GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (501)
Q Consensus 121 -~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 169 (501)
..+|.+.............+++.|.. ..-..-+..| +..+|+.+.
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIG 129 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEecc
Confidence 34566653333332333477877765 2222335555 578999886
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.18 E-value=1.1 Score=41.86 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=102.5
Q ss_pred EEECCcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCc
Q 010770 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD 103 (501)
Q Consensus 26 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~ 103 (501)
.+..++.+|+..+ ...++++|+.++ .|+.-. +.+ .....+..++.||+..+ .+.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~-----------~~~-~~~~~~~~~~~v~v~~~------~~~ 87 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL-----------PGP-ISGAPVVDGGRVYVGTS------DGS 87 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC-----------SSC-GGSGEEEETTEEEEEET------TSE
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec-----------ccc-ccceeeecccccccccc------eee
Confidence 4434478888843 367999999877 565532 111 11224677888888752 127
Q ss_pred EEEEECCCCe--EE-EEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc--eEEcccCCCCCCCC
Q 010770 104 FWVLDTDIWQ--WS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR 178 (501)
Q Consensus 104 ~~~yd~~t~~--W~-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r 178 (501)
++++|..+++ |+ ........+ .+......+. ++.+|+... ...++.+|+.+++ |..-. ..+...
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~ 156 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD-GDRLYVGTS------SGKLVALDPKTGKLLWKYPV---GEPRGS 156 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE-TTEEEEEET------CSEEEEEETTTTEEEEEEES---STT-SS
T ss_pred eEecccCCcceeeeeccccccccc-cccccCceEe-cCEEEEEec------cCcEEEEecCCCcEEEEeec---CCCCCC
Confidence 9999987764 87 343211111 1222223333 446666543 3458999998776 66543 222211
Q ss_pred --------cceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCc--eEEeecCCCCCCCceeeEEEEeCCEEE
Q 010770 179 --------CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSSRCGHTITSGGHYLL 248 (501)
Q Consensus 179 --------~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~--W~~~~~~g~~p~~r~~~s~~~~~~~i~ 248 (501)
.....+..++.+|+..+... +..+|..++. |+.. ..+ ........++.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~ 216 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGR-------------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLY 216 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSS-------------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEE
T ss_pred cceeeecccccceEEECCEEEEEcCCCe-------------EEEEECCCCCEEEEec-CCC------ccCCceeeCCEEE
Confidence 11333334678888775431 2233778776 7433 111 1212445677777
Q ss_pred EEcCCCCCCCCcccccccCeEEEEEcCCCc
Q 010770 249 LFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (501)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (501)
+.. .. ..++++|+.+.+
T Consensus 217 ~~~-~~------------~~l~~~d~~tG~ 233 (238)
T PF13360_consen 217 VTS-SD------------GRLYALDLKTGK 233 (238)
T ss_dssp EEE-TT------------TEEEEEETTTTE
T ss_pred EEe-CC------------CEEEEEECCCCC
Confidence 766 21 578999998864
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=0.34 Score=48.76 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=89.3
Q ss_pred EEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCE-EEEEccccCCCCCC
Q 010770 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFGGRFGSRRLG 102 (501)
Q Consensus 24 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~-iyv~GG~~~~~~~~ 102 (501)
++-......+++.+|+++.- .++..|-.++. .+..... ...|. . .++..-++. ..+++|+. .
T Consensus 218 sv~FHp~~plllvaG~d~~l---rifqvDGk~N~--~lqS~~l----~~fPi--~-~a~f~p~G~~~i~~s~rr-----k 280 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTL---RIFQVDGKVNP--KLQSIHL----EKFPI--Q-KAEFAPNGHSVIFTSGRR-----K 280 (514)
T ss_pred EEEecCCCceEEEecCCCcE---EEEEecCccCh--hheeeee----ccCcc--c-eeeecCCCceEEEecccc-----e
Confidence 33334546799999987642 25555555554 3221110 00111 1 112222444 77777653 2
Q ss_pred cEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCccee
Q 010770 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (501)
Q Consensus 103 ~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 182 (501)
-++.||..+.+-.++.+...++. +..+...+..++.++++-|..+. ++.+...|+.|..-- .++....+.+
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~eli~s~---KieG~v~~~~ 351 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTKELITSF---KIEGVVSDFT 351 (514)
T ss_pred EEEEeeccccccccccCCCCccc-chhheeEecCCCCeEEEcccCce-----EEeehhhhhhhhhee---eeccEEeeEE
Confidence 48999999999999986555552 23333333334456666665443 677778888876422 3344444455
Q ss_pred EEEeCCEEEEEcccCCCCCcccccccccccccccCCCCce
Q 010770 183 ATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW 222 (501)
Q Consensus 183 ~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W 222 (501)
....+..|++.||.+ .++++|+..+..
T Consensus 352 fsSdsk~l~~~~~~G-------------eV~v~nl~~~~~ 378 (514)
T KOG2055|consen 352 FSSDSKELLASGGTG-------------EVYVWNLRQNSC 378 (514)
T ss_pred EecCCcEEEEEcCCc-------------eEEEEecCCcce
Confidence 554566888888863 344557777644
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.77 E-value=0.27 Score=49.40 Aligned_cols=128 Identities=17% Similarity=0.137 Sum_probs=75.6
Q ss_pred cCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccc
Q 010770 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEE 215 (501)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Y 215 (501)
.+.+|+..+.. ....+||+.|..-...+ .++.+.....++.++++||++.............+..-++..|
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 34488888654 34889999999877665 5666666667777899999998765432111000001122233
Q ss_pred c--------CCCCceEEeecCCCCCCCcee-------eEEEEe-CCEEEE-EcCCCCCCCCcccccccCeEEEEEcCCCc
Q 010770 216 E--------NETPGWTQLKLPGQAPSSRCG-------HTITSG-GHYLLL-FGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (501)
Q Consensus 216 d--------~~t~~W~~~~~~g~~p~~r~~-------~s~~~~-~~~i~v-~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (501)
+ ...-.|..++ ++|..+.. .+.+++ +..|+| .-|.. ...|.||+.+.+
T Consensus 146 ~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------~GTysfDt~~~~ 210 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------WGTYSFDTESHE 210 (342)
T ss_pred ccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------------eEEEEEEcCCcc
Confidence 3 2344677765 23322221 223334 667887 33221 247999999999
Q ss_pred eEEcccCCC
Q 010770 279 WKRLPIGNE 287 (501)
Q Consensus 279 W~~v~~~~~ 287 (501)
|+++..-..
T Consensus 211 W~~~GdW~L 219 (342)
T PF07893_consen 211 WRKHGDWML 219 (342)
T ss_pred eeeccceec
Confidence 999977543
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.75 E-value=0.12 Score=50.07 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCc-ccccEEEEECCCCceEEcccC--CCCCC
Q 010770 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWMQLPVT--GSVPP 176 (501)
Q Consensus 100 ~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~--~~~p~ 176 (501)
.+..+..||+.+.+|..+.. ++ .+ .-.++....++++|+.|-..-.. ....+-.||..+.+|+.+... ..+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~--~i-~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN--GI-SG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC--Cc-eE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 46789999999999998863 11 11 11333334566888888765444 456688999999999988742 23555
Q ss_pred CCcceeEEEeC-CEEEEEcccCCCCCcccccccccccccccCCCCceEEeec
Q 010770 177 PRCGHTATMVE-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKL 227 (501)
Q Consensus 177 ~r~~~~~~~~~-~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~ 227 (501)
+.........+ ..+++.|...... .-+..| +..+|+.+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~---------~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGS---------TFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCC---------ceEEEE--cCCceEeccc
Confidence 54322222223 4688877662221 234455 5668998863
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.40 E-value=3.6 Score=41.76 Aligned_cols=208 Identities=21% Similarity=0.216 Sum_probs=105.4
Q ss_pred CCcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEE
Q 010770 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWV 106 (501)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~ 106 (501)
.+++||+.+.. ..+++||..++ .|..-. +. +...+.++.++.+|+.+. ...+++
T Consensus 64 ~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~-----------~~-~~~~~p~v~~~~v~v~~~------~g~l~a 119 (377)
T TIGR03300 64 AGGKVYAADAD------GTVVALDAETGKRLWRVDL-----------DE-RLSGGVGADGGLVFVGTE------KGEVIA 119 (377)
T ss_pred ECCEEEEECCC------CeEEEEEccCCcEeeeecC-----------CC-CcccceEEcCCEEEEEcC------CCEEEE
Confidence 34778876542 35999998866 576532 11 111223445677776432 246899
Q ss_pred EECCCCe--EEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc--eEEcccCCCCCCCCccee
Q 010770 107 LDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHT 182 (501)
Q Consensus 107 yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r~~~~ 182 (501)
+|..+++ |+.-.. ... .+...+.++.+|+..+ ...++.+|+.+.+ |+.-... +....+...+
T Consensus 120 ld~~tG~~~W~~~~~-----~~~--~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~s 185 (377)
T TIGR03300 120 LDAEDGKELWRAKLS-----SEV--LSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVT-PALTLRGSAS 185 (377)
T ss_pred EECCCCcEeeeeccC-----cee--ecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCC-CceeecCCCC
Confidence 9987764 765421 111 1222233557777532 2348999988765 7754311 1111122334
Q ss_pred EEEeCCEEEEEcccCCCCCcccccccccccccccCCCC--ceEEeec-C-CCCCCCc---eeeEEEEeCCEEEEEcCCCC
Q 010770 183 ATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKL-P-GQAPSSR---CGHTITSGGHYLLLFGGHGT 255 (501)
Q Consensus 183 ~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~--~W~~~~~-~-g~~p~~r---~~~s~~~~~~~i~v~GG~~~ 255 (501)
.+..++.+|+ |... ..+..+|+.+. .|+.-.. + +.....+ ...+.++.++.+|+.+.
T Consensus 186 p~~~~~~v~~-~~~~------------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--- 249 (377)
T TIGR03300 186 PVIADGGVLV-GFAG------------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY--- 249 (377)
T ss_pred CEEECCEEEE-ECCC------------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc---
Confidence 4555665554 3221 12344566554 4754220 0 0000001 12233456777777542
Q ss_pred CCCCcccccccCeEEEEEcCCC--ceEEcccCCCCCCcccceEEEEECCEEEEEc
Q 010770 256 GGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (501)
Q Consensus 256 ~~~~~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 308 (501)
...++.||+.+. .|+.-.. ...+.+..++++|+..
T Consensus 250 ----------~g~l~a~d~~tG~~~W~~~~~--------~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 250 ----------QGRVAALDLRSGRVLWKRDAS--------SYQGPAVDDNRLYVTD 286 (377)
T ss_pred ----------CCEEEEEECCCCcEEEeeccC--------CccCceEeCCEEEEEC
Confidence 135889998765 3655211 1123345678888764
No 63
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.23 E-value=1.1 Score=41.03 Aligned_cols=152 Identities=18% Similarity=0.256 Sum_probs=74.5
Q ss_pred EEEEeCCEEEEEccccCCCCCCcEEEEECCCCe--EEEEecC-CCCCCcCCccEEEEEc-CcEEEEEecCCCCcccccEE
Q 010770 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSF-GDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVY 156 (501)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~-~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 156 (501)
+++...+++|+|-| +.+|+++..... -..+... +.+|. .--++.... ++++|+|-| +..|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg-------~~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG-------DKYW 74 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC-------CEEE
Confidence 34445689999966 357777765221 1222210 11232 122333333 379999966 3578
Q ss_pred EEECCCCceEE---cccCCCCCC--CCcceeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEE-----e
Q 010770 157 VLDTISLEWMQ---LPVTGSVPP--PRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-----L 225 (501)
Q Consensus 157 ~yd~~t~~W~~---~~~~~~~p~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~-----~ 225 (501)
+|+..+..+.. ++.- ..|. .....+.... ++++|+|.|.. .++||..+++... +
T Consensus 75 ~~~~~~~~~~~Pk~i~~~-~~~~~~~~iDAA~~~~~~~~~yfFkg~~--------------y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 75 VYTGKNLEPGYPKPISDL-GFPPTVKQIDAALRWPDNGKTYFFKGDK--------------YWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred EEcCcccccCCCcchhhc-CCCCCCCCccEEEEEcCCCEEEEEeCCE--------------EEEEeCCCccccCCCCcch
Confidence 88766422211 1100 1111 2223333333 67999998732 2334443332210 0
Q ss_pred ecC-CCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCc
Q 010770 226 KLP-GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (501)
Q Consensus 226 ~~~-g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (501)
... ..+|.. ...+....++++|+|-| +..|+||..+.+
T Consensus 140 ~~~w~g~p~~-idaa~~~~~~~~yfF~g--------------~~y~~~d~~~~~ 178 (194)
T cd00094 140 ETDFPGVPDK-VDAAFRWLDGYYYFFKG--------------DQYWRFDPRSKE 178 (194)
T ss_pred hhcCCCcCCC-cceeEEeCCCcEEEEEC--------------CEEEEEeCccce
Confidence 000 012322 23333334488999987 468999988765
No 64
>PRK13684 Ycf48-like protein; Provisional
Probab=94.99 E-value=4.3 Score=40.61 Aligned_cols=181 Identities=10% Similarity=0.099 Sum_probs=93.2
Q ss_pred EEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcE
Q 010770 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (501)
Q Consensus 25 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (501)
...++++.+++.|.. ..+++=+-.-.+|..+.. +..-..+.+....+..++..|..+ .+
T Consensus 137 i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----------~~~g~~~~i~~~~~g~~v~~g~~G-----~i 195 (334)
T PRK13684 137 ITALGPGTAEMATNV------GAIYRTTDGGKNWEALVE----------DAAGVVRNLRRSPDGKYVAVSSRG-----NF 195 (334)
T ss_pred EEEECCCcceeeecc------ceEEEECCCCCCceeCcC----------CCcceEEEEEECCCCeEEEEeCCc-----eE
Confidence 444555566666543 235554445679998752 222234445555444444433322 22
Q ss_pred EEE-ECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEE-C-CCCceEEcccCCCCCCCCc-c
Q 010770 105 WVL-DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD-T-ISLEWMQLPVTGSVPPPRC-G 180 (501)
Q Consensus 105 ~~y-d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd-~-~t~~W~~~~~~~~~p~~r~-~ 180 (501)
+.- +....+|+.+. .+..+..++++...++.++++|... ...+. . .-.+|+.+.. +...... -
T Consensus 196 ~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~--~~~~~~~~l 262 (334)
T PRK13684 196 YSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII--PEITNGYGY 262 (334)
T ss_pred EEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC--Cccccccce
Confidence 322 33446799886 4455566666666677888887531 22332 2 2357997641 1111112 2
Q ss_pred eeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEE-EeCCEEEEEcCCC
Q 010770 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT-SGGHYLLLFGGHG 254 (501)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~-~~~~~i~v~GG~~ 254 (501)
++++.. ++.+|+.|.... +..-.....+|+.+......| .....++ ..+++.|+.|...
T Consensus 263 ~~v~~~~~~~~~~~G~~G~-------------v~~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 263 LDLAYRTPGEIWAGGGNGT-------------LLVSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred eeEEEcCCCCEEEEcCCCe-------------EEEeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEEECCCc
Confidence 333333 567888875421 111133457899876322333 2333444 3567888888643
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.94 E-value=5.2 Score=41.08 Aligned_cols=147 Identities=18% Similarity=0.180 Sum_probs=78.5
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (501)
..++++|+.+++-..+.. .+... .+.+...++ .|++....++ ...+|.+|+.+.....+... ......
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~--~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~---~~~~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMN--GAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNG---PGIDTE 282 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCc--cceEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCC---CCCCCC
Confidence 579999999887766653 22111 223333444 4555433222 35699999999888877522 111111
Q ss_pred eeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEE-EeCCEEEEEcCCCCCCC
Q 010770 181 HTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT-SGGHYLLLFGGHGTGGW 258 (501)
Q Consensus 181 ~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~-~~~~~i~v~GG~~~~~~ 258 (501)
.. ...++ +|++.....+. ..++.+|..+..+..+...+. ...... .-+++.+++.....+
T Consensus 283 ~~-~s~dg~~l~~~s~~~g~----------~~iy~~d~~~~~~~~l~~~~~-----~~~~~~~spdg~~i~~~~~~~~-- 344 (417)
T TIGR02800 283 PS-WSPDGKSIAFTSDRGGS----------PQIYMMDADGGEVRRLTFRGG-----YNASPSWSPDGDLIAFVHREGG-- 344 (417)
T ss_pred EE-ECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEeecCCC-----CccCeEECCCCCEEEEEEccCC--
Confidence 11 11244 45544332211 245566888888877763221 111222 234555555543321
Q ss_pred CcccccccCeEEEEEcCCCceEEccc
Q 010770 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
...++++|+.+..++.+..
T Consensus 345 -------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 -------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred -------ceEEEEEeCCCCCeEEccC
Confidence 2478999999877776654
No 66
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.46 E-value=3.2 Score=37.86 Aligned_cols=154 Identities=12% Similarity=0.145 Sum_probs=75.8
Q ss_pred EEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe-C-CEEEEEccccCCCCCC
Q 010770 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D-CHMFIFGGRFGSRRLG 102 (501)
Q Consensus 25 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~-~~iyv~GG~~~~~~~~ 102 (501)
++... +.+|+|-| +.+|+++.............. -+..| ..--++... + +++|+|-| +
T Consensus 12 ~~~~~-g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~---w~~~p--~~IDAa~~~~~~~~~yfFkg-------~ 71 (194)
T cd00094 12 VTTLR-GELYFFKG-------RYFWRLSPGKPPGSPFLISSF---WPSLP--SPVDAAFERPDTGKIYFFKG-------D 71 (194)
T ss_pred EEEeC-CEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh---CCCCC--CCccEEEEECCCCEEEEECC-------C
Confidence 34445 89999977 468888876222222111100 00112 222333333 3 78999966 3
Q ss_pred cEEEEECCCCeE---EEEecCCCCCC-cCCccEEEEEc-CcEEEEEecCCCCcccccEEEEECCCCceEEc-----ccC-
Q 010770 103 DFWVLDTDIWQW---SELTSFGDLPS-PRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL-----PVT- 171 (501)
Q Consensus 103 ~~~~yd~~t~~W---~~~~~~~~~p~-~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-----~~~- 171 (501)
.+|+|+..+..+ ..+.. -..|. +..--++.... ++++|+|-| +..|+||..+++...- ...
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w 143 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDF 143 (194)
T ss_pred EEEEEcCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcC
Confidence 578887664222 11111 01221 11112232333 679999987 4578888766543211 100
Q ss_pred CCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCc
Q 010770 172 GSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG 221 (501)
Q Consensus 172 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~ 221 (501)
..+|.. ...+....++++|+|-|. ..++||..+.+
T Consensus 144 ~g~p~~-idaa~~~~~~~~yfF~g~--------------~y~~~d~~~~~ 178 (194)
T cd00094 144 PGVPDK-VDAAFRWLDGYYYFFKGD--------------QYWRFDPRSKE 178 (194)
T ss_pred CCcCCC-cceeEEeCCCcEEEEECC--------------EEEEEeCccce
Confidence 012221 223333334889999773 34566776654
No 67
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.46 E-value=7 Score=40.45 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=78.7
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (501)
..++++|+.+++-..+.. .+. .........++ +|++....++ ..++|++|+.+.+.+.+.. .+.. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~~~--~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN---HPAI--D 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc---CCCC--c
Confidence 479999999988777653 111 11123333344 4544332222 2579999999999888752 1111 1
Q ss_pred eeEEEe-C-CEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEE-eCCEEEEEcCCCCCC
Q 010770 181 HTATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGG 257 (501)
Q Consensus 181 ~~~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~-~~~~i~v~GG~~~~~ 257 (501)
...... + ++|++.....+. ..++.+|+.+..++.+...+. ........ .++.|++......
T Consensus 290 ~~~~~spDg~~i~f~s~~~g~----------~~iy~~d~~~g~~~~lt~~~~----~~~~~~~Spdg~~i~~~~~~~~-- 353 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGGK----------PQIYKVNVNGGRAERVTFVGN----YNARPRLSADGKTLVMVHRQDG-- 353 (430)
T ss_pred CCeEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEeecCCC----CccceEECCCCCEEEEEEccCC--
Confidence 112222 3 455554322211 345666888888887763221 11111222 3445555442211
Q ss_pred CCcccccccCeEEEEEcCCCceEEccc
Q 010770 258 WLSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
...++++|+.+...+.+..
T Consensus 354 --------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 --------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred --------ceEEEEEECCCCCEEEccC
Confidence 1369999999988888765
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.13 E-value=8.5 Score=40.22 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=77.9
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
..+|++|+.+++-..+... +.. .......- +..|++....++ ..+++.+|..+++.+++....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---------~g~-~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~--- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---------PGI-NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHR--- 305 (448)
T ss_pred cEEEEEECCCCCeEEecCC---------CCC-cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCC---
Confidence 5799999998877666422 111 11112222 345655433222 257999999999888776311
Q ss_pred CcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC-EEEEEcccCCCCCc
Q 010770 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPI 202 (501)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~ 202 (501)
. .....+...++ .|++.....+ ...+|.+|..+++++.+...+.. .......-++ .|++.+ .....
T Consensus 306 -~-~~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~-~~~g~-- 373 (448)
T PRK04792 306 -A-IDTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVN-RTNGK-- 373 (448)
T ss_pred -C-CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEE-ecCCc--
Confidence 1 11222333344 4554433222 25799999999999887522211 1111122244 555543 22211
Q ss_pred ccccccccccccccCCCCceEEee
Q 010770 203 MGDLWALKGLIEEENETPGWTQLK 226 (501)
Q Consensus 203 ~~d~~~l~~~~~Yd~~t~~W~~~~ 226 (501)
..++.+|+.+...+.+.
T Consensus 374 -------~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 374 -------FNIARQDLETGAMQVLT 390 (448)
T ss_pred -------eEEEEEECCCCCeEEcc
Confidence 23556688888877765
No 69
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.12 E-value=8.4 Score=40.01 Aligned_cols=188 Identities=15% Similarity=0.097 Sum_probs=95.7
Q ss_pred CCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCC
Q 010770 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (501)
Q Consensus 45 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 123 (501)
...++++|+.+++-..+.... . ........-++ +|++.....+ ..+++++|+.+++..++...
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~---------g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~--- 290 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFR---------G-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH--- 290 (433)
T ss_pred CcEEEEEECCCCCEEEeccCC---------C-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---
Confidence 356999999988877665321 1 01111222233 5554432222 25799999999887776531
Q ss_pred CCcCCccEEEEEcCcE-EEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEe--CCEEEEEcccCCCC
Q 010770 124 PSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGG 200 (501)
Q Consensus 124 p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~ 200 (501)
+. .....+...+++ |++.....+ ...+|.+|..+.+.+.+...+ ......... ++.|++..+. ...
T Consensus 291 ~~--~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~ 359 (433)
T PRK04922 291 FG--IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GGQ 359 (433)
T ss_pred CC--CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CCc
Confidence 11 112233444554 444332222 246999999998888875322 122222222 3455555432 111
Q ss_pred CcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceE
Q 010770 201 PIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWK 280 (501)
Q Consensus 201 ~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 280 (501)
..+..+|+.++..+.+... +. .... ...-+++.+++.....+ ...++.++.+...=.
T Consensus 360 ---------~~I~v~d~~~g~~~~Lt~~---~~-~~~p-~~spdG~~i~~~s~~~g---------~~~L~~~~~~g~~~~ 416 (433)
T PRK04922 360 ---------YRIAVMDLSTGSVRTLTPG---SL-DESP-SFAPNGSMVLYATREGG---------RGVLAAVSTDGRVRQ 416 (433)
T ss_pred ---------eeEEEEECCCCCeEECCCC---CC-CCCc-eECCCCCEEEEEEecCC---------ceEEEEEECCCCceE
Confidence 2456678888888766521 11 1111 22234554455433221 246888888654433
Q ss_pred Ec
Q 010770 281 RL 282 (501)
Q Consensus 281 ~v 282 (501)
++
T Consensus 417 ~l 418 (433)
T PRK04922 417 RL 418 (433)
T ss_pred Ec
Confidence 33
No 70
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.79 E-value=9.1 Score=39.26 Aligned_cols=146 Identities=20% Similarity=0.209 Sum_probs=77.2
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeC-CEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
..++++|+.++.-..+... +.... .....-+ ..|++.....+ ..+++.+|..++....+.....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---------~~~~~-~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~-- 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---------PGMNG-APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPG-- 278 (417)
T ss_pred cEEEEEECCCCCEEEeecC---------CCCcc-ceEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCC--
Confidence 5789999988876665422 11111 1122223 35655433222 2579999999888777753111
Q ss_pred CcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEe-CCEEEEEcccCCCCCc
Q 010770 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPI 202 (501)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 202 (501)
. ........++ +|++.....+ ...+|.+|..+.++..+...+ ......... +++.+++.......
T Consensus 279 -~--~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~~-- 345 (417)
T TIGR02800 279 -I--DTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGGG-- 345 (417)
T ss_pred -C--CCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCCc--
Confidence 1 1112222344 4544433222 247999999998888775322 111222222 45555555443211
Q ss_pred ccccccccccccccCCCCceEEee
Q 010770 203 MGDLWALKGLIEEENETPGWTQLK 226 (501)
Q Consensus 203 ~~d~~~l~~~~~Yd~~t~~W~~~~ 226 (501)
..++.+|+.+..++.+.
T Consensus 346 -------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 346 -------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred -------eEEEEEeCCCCCeEEcc
Confidence 34667788887776665
No 71
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.68 E-value=10 Score=39.42 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=93.3
Q ss_pred CCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCC
Q 010770 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (501)
Q Consensus 45 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 123 (501)
...+|+.|.....=..++... ....+....-++ +|+.. ..... ...++++|+.+++...+.. .
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~----------~~v~~p~wSpDG~~lay~-s~~~g--~~~i~~~dl~~g~~~~l~~---~ 244 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGS----------SLVLTPRFSPNRQEITYM-SYANG--RPRVYLLDLETGQRELVGN---F 244 (435)
T ss_pred ceEEEEECCCCCCcEEEecCC----------CCeEeeEECCCCCEEEEE-EecCC--CCEEEEEECCCCcEEEeec---C
Confidence 567888887654434443211 111222222344 44333 22211 2579999999998877763 2
Q ss_pred CCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC-EEEEEcccCCCCC
Q 010770 124 PSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGP 201 (501)
Q Consensus 124 p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~ 201 (501)
+.. ..+.....++ +|++....++ ..++|.+|..+..-..+. ..+..-. .....-++ +|++.....+.
T Consensus 245 ~g~--~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt---~~~~~~~-~~~~spDG~~i~f~s~~~g~-- 313 (435)
T PRK05137 245 PGM--TFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLT---DSPAIDT-SPSYSPDGSQIVFESDRSGS-- 313 (435)
T ss_pred CCc--ccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEcc---CCCCccC-ceeEcCCCCEEEEEECCCCC--
Confidence 221 1222333344 4544433222 357999999998887775 2221111 11112234 44433222111
Q ss_pred cccccccccccccccCCCCceEEeecCCCCCCCceeeEEEE-eCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceE
Q 010770 202 IMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWK 280 (501)
Q Consensus 202 ~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 280 (501)
..++.+|..+...+.+... .......... .+..|++.. ...+ ...++++|+.+....
T Consensus 314 --------~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~~~~---------~~~i~~~d~~~~~~~ 371 (435)
T PRK05137 314 --------PQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-QGGG---------QFSIGVMKPDGSGER 371 (435)
T ss_pred --------CeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-cCCC---------ceEEEEEECCCCceE
Confidence 2355668887777777621 1111111122 334554433 2211 147899998777666
Q ss_pred Eccc
Q 010770 281 RLPI 284 (501)
Q Consensus 281 ~v~~ 284 (501)
.+..
T Consensus 372 ~lt~ 375 (435)
T PRK05137 372 ILTS 375 (435)
T ss_pred eccC
Confidence 5543
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.61 E-value=0.91 Score=43.23 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=75.6
Q ss_pred EEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccc
Q 010770 134 AIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLI 213 (501)
Q Consensus 134 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~ 213 (501)
...++.+|.--|..+. +.+..||+.|++-.... ++|...++-+++.++++||..-=. -...+
T Consensus 52 ~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------------~~~~f 113 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------------EGTGF 113 (264)
T ss_dssp EEETTEEEEEECSTTE---EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------------SSEEE
T ss_pred ecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------------CCeEE
Confidence 3367799998886553 67899999999877665 788888999999999999998533 35567
Q ss_pred cccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCc
Q 010770 214 EEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (501)
Q Consensus 214 ~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (501)
+||+.+ .+.+. ..+.+..+.++|..+..+++.-|. +.++.+||.+.+
T Consensus 114 ~yd~~t--l~~~~---~~~y~~EGWGLt~dg~~Li~SDGS-------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNT--LKKIG---TFPYPGEGWGLTSDGKRLIMSDGS-------------SRLYFLDPETFK 160 (264)
T ss_dssp EEETTT--TEEEE---EEE-SSS--EEEECSSCEEEE-SS-------------SEEEEE-TTT-S
T ss_pred EEcccc--ceEEE---EEecCCcceEEEcCCCEEEEECCc-------------cceEEECCcccc
Confidence 888875 45554 344556888999888899987774 568999988654
No 73
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.47 E-value=11 Score=39.17 Aligned_cols=194 Identities=12% Similarity=0.050 Sum_probs=94.7
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
..++++|+.+++...+.... . ........-++ .|++....++ ..++|.+|..+....++.. .+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~---------g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~---~~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP---------G-MTFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTD---SP 289 (435)
T ss_pred CEEEEEECCCCcEEEeecCC---------C-cccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccC---CC
Confidence 67999999999887765321 1 11111222234 4544432222 3579999999988777753 11
Q ss_pred CcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC-EEEEEcccCCCCCcc
Q 010770 125 SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIM 203 (501)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~ 203 (501)
. .........+++-++|..... ....+|++|..+.+.+.+... ..........-++ .|++.. .....
T Consensus 290 ~--~~~~~~~spDG~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~~~~~--- 357 (435)
T PRK05137 290 A--IDTSPSYSPDGSQIVFESDRS--GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-QGGGQ--- 357 (435)
T ss_pred C--ccCceeEcCCCCEEEEEECCC--CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-cCCCc---
Confidence 1 111223333444333433111 124699999988887777521 1111111122244 454433 21111
Q ss_pred cccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcc
Q 010770 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (501)
Q Consensus 204 ~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (501)
..+..+|+.+.....+.... ....-...-+++.+++.....+. .....+|++|++...-..+.
T Consensus 358 ------~~i~~~d~~~~~~~~lt~~~-----~~~~p~~spDG~~i~~~~~~~~~------~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 358 ------FSIGVMKPDGSGERILTSGF-----LVEGPTWAPNGRVIMFFRQTPGS------GGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ------eEEEEEECCCCceEeccCCC-----CCCCCeECCCCCEEEEEEccCCC------CCcceEEEEECCCCceEEcc
Confidence 23556677766655554211 11111122344444443322111 01246899998877666665
Q ss_pred c
Q 010770 284 I 284 (501)
Q Consensus 284 ~ 284 (501)
.
T Consensus 421 ~ 421 (435)
T PRK05137 421 T 421 (435)
T ss_pred C
Confidence 3
No 74
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.41 E-value=11 Score=39.24 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=79.3
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (501)
..+|++|+.+++-..+.. .+.. ..+.+...|+ .|++....++ ..++|.+|..+++.+.+... .. . .
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~--~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~---~~-~-~ 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGI--NGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRH---RA-I-D 308 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCC--cCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccC---CC-C-c
Confidence 579999999887776653 2211 1223333344 4655443322 35799999999998887521 11 1 1
Q ss_pred eeEEE-eCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCC
Q 010770 181 HTATM-VEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (501)
Q Consensus 181 ~~~~~-~~~-~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~ 258 (501)
..... -++ .|++.....+. ..++.+|+.+++++.+...+... ...+....++.|++.+ ...+
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~----------~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~~SpDG~~l~~~~-~~~g-- 372 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGK----------PQIYRVNLASGKVSRLTFEGEQN---LGGSITPDGRSMIMVN-RTNG-- 372 (448)
T ss_pred cceEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEEecCCCCC---cCeeECCCCCEEEEEE-ecCC--
Confidence 11122 244 45554322211 34556688888898886322211 1111212334554443 2221
Q ss_pred CcccccccCeEEEEEcCCCceEEccc
Q 010770 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
...++++|+.+...+.+..
T Consensus 373 -------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -------ceEEEEEECCCCCeEEccC
Confidence 2478999999988877754
No 75
>PRK13684 Ycf48-like protein; Provisional
Probab=93.39 E-value=9.4 Score=38.17 Aligned_cols=176 Identities=13% Similarity=0.209 Sum_probs=86.8
Q ss_pred CCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEE-ECCCCc
Q 010770 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL-DTISLE 164 (501)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y-d~~t~~ 164 (501)
++.+|+.|.. ..+++=+=.-.+|+.+.. +..-..+.+....++.++++|.. + .++.- |....+
T Consensus 142 ~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~-G-----~i~~s~~~gg~t 205 (334)
T PRK13684 142 PGTAEMATNV------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSR-G-----NFYSTWEPGQTA 205 (334)
T ss_pred CCcceeeecc------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCC-c-----eEEEEcCCCCCe
Confidence 3456666532 123333334568998863 22223445555556555555432 2 23332 344567
Q ss_pred eEEcccCCCCCCCCcceeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEE-
Q 010770 165 WMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS- 242 (501)
Q Consensus 165 W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~- 242 (501)
|+.+. .+..+.-.+++.. ++.++++|....- .+. =+-...+|+.+..+. ......-++++.
T Consensus 206 W~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G~~--------~~~----s~d~G~sW~~~~~~~-~~~~~~l~~v~~~ 268 (334)
T PRK13684 206 WTPHQ----RNSSRRLQSMGFQPDGNLWMLARGGQI--------RFN----DPDDLESWSKPIIPE-ITNGYGYLDLAYR 268 (334)
T ss_pred EEEee----CCCcccceeeeEcCCCCEEEEecCCEE--------EEc----cCCCCCccccccCCc-cccccceeeEEEc
Confidence 99875 2333444444444 6788888753210 010 023456899765211 001111233333
Q ss_pred eCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEE-CCEEEEEcc
Q 010770 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (501)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~GG 309 (501)
.++.+++.|... .++.-.....+|+.+...... +...+.++.. +++.|+.|.
T Consensus 269 ~~~~~~~~G~~G-------------~v~~S~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 269 TPGEIWAGGGNG-------------TLLVSKDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCCCEEEEcCCC-------------eEEEeCCCCCCCeECCcCCCC--CcceEEEEEeCCCceEEECC
Confidence 356788887532 233333345799998652222 2234445544 677777765
No 76
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.08 E-value=1.3 Score=37.41 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCccccccccccccccc
Q 010770 137 NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (501)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd 216 (501)
||.+|...-. .....+.+.+||+.+.+|+.+..+...........++..+|+|-++.-........-++|.+. |
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe-----D 78 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE-----D 78 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee-----c
Confidence 5677777655 333456789999999999998743112344566677778999888765443322335677775 6
Q ss_pred CCCCceEEee
Q 010770 217 NETPGWTQLK 226 (501)
Q Consensus 217 ~~t~~W~~~~ 226 (501)
..+.+|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6678999765
No 77
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.94 E-value=8.4 Score=36.36 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=105.0
Q ss_pred CcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe--CCEEEEEccccCCCCCCcEEEE
Q 010770 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVL 107 (501)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~y 107 (501)
++.+|+.-- ....++++|+.++.-..+.. +. ..+++.. ++.+|+... ....++
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~----------~~---~~G~~~~~~~g~l~v~~~-------~~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL----------PG---PNGMAFDRPDGRLYVADS-------GGIAVV 65 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES----------SS---EEEEEEECTTSEEEEEET-------TCEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec----------CC---CceEEEEccCCEEEEEEc-------CceEEE
Confidence 466777632 23579999999987766442 22 2334443 678888753 235677
Q ss_pred ECCCCeEEEEecCCCCC-CcCCccEEEEEcCcEEEEEecCCCC-ccc--ccEEEEECCCCceEEcccCCCCCCCCcceeE
Q 010770 108 DTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGK-KWL--SDVYVLDTISLEWMQLPVTGSVPPPRCGHTA 183 (501)
Q Consensus 108 d~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~-~~~--~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 183 (501)
|+.+++++.+....... ......-.++..+|.||+-.-.... ... ..++++++. .+.+.+.. .+ ..-..+
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~---~~pNGi 139 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GL---GFPNGI 139 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EE---SSEEEE
T ss_pred ecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Cc---ccccce
Confidence 99999999887521111 1122223445567788875432211 112 579999998 66665541 11 111333
Q ss_pred EEe--CCEEEEEcccCCCCCcccccccccccccccCCC--CceEEeecCCCCCCC-ceeeEEEE-eCCEEEEEcCCCCCC
Q 010770 184 TMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENET--PGWTQLKLPGQAPSS-RCGHTITS-GGHYLLLFGGHGTGG 257 (501)
Q Consensus 184 ~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t--~~W~~~~~~g~~p~~-r~~~s~~~-~~~~i~v~GG~~~~~ 257 (501)
+.. ++.||+.--. -..+++|++.. ..+.........+.. ..--.+++ .++.||+..-.
T Consensus 140 ~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---- 203 (246)
T PF08450_consen 140 AFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---- 203 (246)
T ss_dssp EEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----
T ss_pred EECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----
Confidence 333 3467774321 13455667653 334322210011221 12234444 56788886321
Q ss_pred CCcccccccCeEEEEEcCCCceEEccc
Q 010770 258 WLSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
.+.|++||++...-..+..
T Consensus 204 --------~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 204 --------GGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp --------TTEEEEEETTSCEEEEEE-
T ss_pred --------CCEEEEECCCccEEEEEcC
Confidence 2579999999666666654
No 78
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.76 E-value=14 Score=38.31 Aligned_cols=146 Identities=13% Similarity=0.089 Sum_probs=78.1
Q ss_pred CCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeC-CEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCC
Q 010770 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (501)
Q Consensus 45 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 123 (501)
...+|++|+.+++-..+..... ........-+ ++|++.....+ ..+++++|..+....++.. .
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g----------~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~ 285 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEG----------LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN---H 285 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCC----------CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc---C
Confidence 3579999999988777653210 0011122223 34544322111 2579999999998887753 1
Q ss_pred CCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEE-eC-CEEEEEcccCCCC
Q 010770 124 PSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM-VE-KRLLIYGGRGGGG 200 (501)
Q Consensus 124 p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~ 200 (501)
+ . .........++ .|++.....+ ...+|.+|+.+++++.+...+ ........ -+ +.|++..... ..
T Consensus 286 ~-~-~~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~-~~ 354 (430)
T PRK00178 286 P-A-IDTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQD-GN 354 (430)
T ss_pred C-C-CcCCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccC-Cc
Confidence 1 1 12222333344 4555432222 246999999999988875221 11112222 23 4555543221 11
Q ss_pred CcccccccccccccccCCCCceEEee
Q 010770 201 PIMGDLWALKGLIEEENETPGWTQLK 226 (501)
Q Consensus 201 ~~~~d~~~l~~~~~Yd~~t~~W~~~~ 226 (501)
..+..+|+.+...+.+.
T Consensus 355 ---------~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 355 ---------FHVAAQDLQRGSVRILT 371 (430)
T ss_pred ---------eEEEEEECCCCCEEEcc
Confidence 23567799888888776
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.42 E-value=2.5 Score=42.78 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=89.7
Q ss_pred cCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCC---CCcceeEEEeCCE-EEEEcccCCCCCcccccccccc
Q 010770 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPP---PRCGHTATMVEKR-LLIYGGRGGGGPIMGDLWALKG 211 (501)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~---~r~~~~~~~~~~~-lyv~GG~~~~~~~~~d~~~l~~ 211 (501)
....+.+.+|.++. -.+|..|-+++. .+. ++.. |........ +|. ..+++|.. .-
T Consensus 223 p~~plllvaG~d~~---lrifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p-~G~~~i~~s~rr------------ky 281 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGT---LRIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAP-NGHSVIFTSGRR------------KY 281 (514)
T ss_pred CCCceEEEecCCCc---EEEEEecCccCh--hhe---eeeeccCccceeeecC-CCceEEEecccc------------eE
Confidence 34478889998654 124555555554 222 2221 221111111 444 77777753 34
Q ss_pred cccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCc
Q 010770 212 LIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPA 291 (501)
Q Consensus 212 ~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~ 291 (501)
++.||+.+.+-+++..+..++..-...-.+...+.++++-|.. ..|+++...++.|..--.+.. .
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------------G~I~lLhakT~eli~s~KieG---~ 346 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------------GHIHLLHAKTKELITSFKIEG---V 346 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------------ceEEeehhhhhhhhheeeecc---E
Confidence 6789999999998875544442222222334455566666654 347788888888754332211 1
Q ss_pred ccceEEEEECCEEEEEccCCCCCccCcEEEecCCCCccccceecC
Q 010770 292 RAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTES 336 (501)
Q Consensus 292 r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~~~~~~d~~~~~w~~~ 336 (501)
-...+...-+..|++.||. +.+|.+++.......+|..-
T Consensus 347 v~~~~fsSdsk~l~~~~~~------GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGT------GEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred EeeEEEecCCcEEEEEcCC------ceEEEEecCCcceEEEEeec
Confidence 1222222334667777763 36899999888888888754
No 80
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.39 E-value=8.1 Score=39.73 Aligned_cols=206 Identities=14% Similarity=0.079 Sum_probs=106.1
Q ss_pred CcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccCCCC------CC
Q 010770 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRR------LG 102 (501)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~------~~ 102 (501)
+++.++++=-.++.....+.++|+.+++...-. .+.++... ++.. ++..+++........ -.
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----------i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----------IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----------EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----------ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 455556554444555567999999998554321 12222222 3444 445555555544323 56
Q ss_pred cEEEEECCCCeEE--EEecCCCCCCcCC-ccEEEEEcCcEEEEEecCCCCcccccEEEEECCCC-----ceEEcccCCCC
Q 010770 103 DFWVLDTDIWQWS--ELTSFGDLPSPRD-FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-----EWMQLPVTGSV 174 (501)
Q Consensus 103 ~~~~yd~~t~~W~--~~~~~~~~p~~r~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~ 174 (501)
.++.....+..-. .+-. .+.... ...+....+++.+++.-..... .+.++..|.... .|..+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~---- 274 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSP---- 274 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEE----
T ss_pred EEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeC----
Confidence 7888888776543 3322 222332 3333334454433333322222 578999999875 7888752
Q ss_pred CCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC---ceEEeecCCCCCCCceeeEEEEeCCEEEEEc
Q 010770 175 PPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP---GWTQLKLPGQAPSSRCGHTITSGGHYLLLFG 251 (501)
Q Consensus 175 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~---~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~G 251 (501)
+..-....+...++.+|+........ ..+..+++... .|..+-. +......-..+...++.|++..
T Consensus 275 ~~~~~~~~v~~~~~~~yi~Tn~~a~~---------~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 275 REDGVEYYVDHHGDRLYILTNDDAPN---------GRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp SSSS-EEEEEEETTEEEEEE-TT-TT----------EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEE
T ss_pred CCCceEEEEEccCCEEEEeeCCCCCC---------cEEEEecccccccccceeEEc--CCCCceeEEEEEEECCEEEEEE
Confidence 11122233444588999987643322 22334455544 3664331 1122223334555788888765
Q ss_pred CCCCCCCCcccccccCeEEEEEcC
Q 010770 252 GHGTGGWLSRYDIYYNDTIILDRL 275 (501)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~ 275 (501)
=.+ ....+.++++.
T Consensus 344 ~~~----------~~~~l~v~~~~ 357 (414)
T PF02897_consen 344 REN----------GSSRLRVYDLD 357 (414)
T ss_dssp EET----------TEEEEEEEETT
T ss_pred EEC----------CccEEEEEECC
Confidence 322 34679999988
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.12 E-value=4.1 Score=38.91 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=90.4
Q ss_pred CCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEE
Q 010770 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (501)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (501)
.++.+|.--|..+ .|.+.+||+.+++=.... ++|..-++-.++.++++||..-= .....++||
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~---------~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd 116 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSV---------PLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYD 116 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEE---------E-TTT--EEEEEEETTEEEEEES-----SSSEEEEEE
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEE---------ECCccccceeEEEECCEEEEEEe-----cCCeEEEEc
Confidence 4466776666544 377999999999765543 34566677788999999999843 234689999
Q ss_pred CCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC
Q 010770 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (501)
Q Consensus 109 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~ 188 (501)
..+- ..+.. .+-+..+-+.+..++ .+++--| ++.++..||.+.+=..- +.....+..+..+|.
T Consensus 117 ~~tl--~~~~~---~~y~~EGWGLt~dg~-~Li~SDG------S~~L~~~dP~~f~~~~~-----i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 117 PNTL--KKIGT---FPYPGEGWGLTSDGK-RLIMSDG------SSRLYFLDPETFKEVRT-----IQVTDNGRPVSNLNE 179 (264)
T ss_dssp TTTT--EEEEE---EE-SSS--EEEECSS-CEEEE-S------SSEEEEE-TTT-SEEEE-----EE-EETTEE---EEE
T ss_pred cccc--eEEEE---EecCCcceEEEcCCC-EEEEECC------ccceEEECCcccceEEE-----EEEEECCEECCCcEe
Confidence 9875 33332 333456677775544 7888777 46689999987653321 111112222223333
Q ss_pred EEEEEcccCCCCCcccccccccccccccCCCCceEEe
Q 010770 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQL 225 (501)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~ 225 (501)
--|+ +| ..+..+|..+.+.+-||.++.-...
T Consensus 180 LE~i-~G-----~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 180 LEYI-NG-----KIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEEE-TT-----EEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EEEE-cC-----EEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 3333 33 2444566677788889999886653
No 82
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.63 E-value=13 Score=35.54 Aligned_cols=103 Identities=17% Similarity=0.061 Sum_probs=54.0
Q ss_pred EEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeC-CEEEEEccccCCCCCCcEEEEECC
Q 010770 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLDTD 110 (501)
Q Consensus 32 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~ 110 (501)
.+|+.++.+ ..+.+||+.+++-...... ...++ ..+..-+ ..+|+.++. .+.+..||..
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~--------~~~~~--~l~~~~dg~~l~~~~~~-----~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV--------GQRPR--GITLSKDGKLLYVCASD-----SDTIQVIDLA 61 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC--------CCCCC--ceEECCCCCEEEEEECC-----CCeEEEEECC
Confidence 466666543 3688899987764333211 11122 1222223 357777653 2458899998
Q ss_pred CCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCc
Q 010770 111 IWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 111 t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
+.+....-+. .+. ....+...++ .+|+.++.+ ..+..||+.+.+
T Consensus 62 ~~~~~~~~~~--~~~---~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~ 106 (300)
T TIGR03866 62 TGEVIGTLPS--GPD---PELFALHPNGKILYIANEDD-----NLVTVIDIETRK 106 (300)
T ss_pred CCcEEEeccC--CCC---ccEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe
Confidence 8776543211 111 1233333343 566654422 358889988764
No 83
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.55 E-value=19 Score=37.34 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=84.9
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (501)
..++.+|..+++-..+.. .+.. ..+.....|+ +|++.....+ ...+|.+|+.+.+.+++.. .+..-
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~--~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~---~~~~~-- 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRH--NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTD---GRSNN-- 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCC--cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccC---CCCCc--
Confidence 468999998887666653 2221 1223333444 4554433222 2359999999998887752 11111
Q ss_pred eeEEEe-CCE-EEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCC-EEEEEcCCCCCC
Q 010770 181 HTATMV-EKR-LLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTGG 257 (501)
Q Consensus 181 ~~~~~~-~~~-lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~-~i~v~GG~~~~~ 257 (501)
...... +++ |+......+ . ..++.+|+.+..-+.+...+. ........-++ .|++.+....
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g-~---------~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~SpDG~~Ia~~~~~~g-- 353 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG-R---------PQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVSSNGG-- 353 (429)
T ss_pred CceEECCCCCEEEEEeCCCC-C---------ceEEEEECCCCCeEEeecCCC----CccCEEECCCCCEEEEEEccCC--
Confidence 112222 444 443332211 1 234455777777766652211 11112222334 4444443221
Q ss_pred CCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCC
Q 010770 258 WLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (501)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 312 (501)
...++++|+.+..++.+..... .......-+++.+++.+.++
T Consensus 354 --------~~~I~~~dl~~g~~~~Lt~~~~-----~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 354 --------QQHIAKQDLATGGVQVLTDTFL-----DETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred --------CceEEEEECCCCCeEEeCCCCC-----CCCceECCCCCEEEEEEcCC
Confidence 1468999999999888774311 11112223566666665544
No 84
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.16 E-value=13 Score=34.58 Aligned_cols=195 Identities=16% Similarity=0.260 Sum_probs=104.3
Q ss_pred ceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeE--EEEeCCEEEEEccccCCCCCCcEEEEECCCCe--EEEEecC
Q 010770 47 DVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHI--AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSF 120 (501)
Q Consensus 47 ~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~ 120 (501)
.+.++|+.++ .|+.-. ..+..... .+..++.+|+.. ....++++|+.+++ |+.-.
T Consensus 4 ~l~~~d~~tG~~~W~~~~-----------~~~~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~~-- 64 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-----------GPGIGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKVLWRFDL-- 64 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-----------SSSCSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEEC-----------CCCCCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCEEEEeec--
Confidence 4677888665 566621 11122222 344788999883 33579999998876 55442
Q ss_pred CCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc--eE-EcccCCCCCCCCcceeEEEeCCEEEEEcccC
Q 010770 121 GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WM-QLPVTGSVPPPRCGHTATMVEKRLLIYGGRG 197 (501)
Q Consensus 121 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 197 (501)
+.... ... ...++.+|+..+ -+.++.+|..+.+ |+ ..... +....+......+.++.+|+....
T Consensus 65 ---~~~~~-~~~-~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 131 (238)
T PF13360_consen 65 ---PGPIS-GAP-VVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTSS- 131 (238)
T ss_dssp ---SSCGG-SGE-EEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEETC-
T ss_pred ---ccccc-cee-eecccccccccc------eeeeEecccCCcceeeeeccccc-cccccccccCceEecCEEEEEecc-
Confidence 12211 223 334558888762 1269999977765 88 34321 111122333444457777776531
Q ss_pred CCCCcccccccccccccccCCCCc--eEEeecCCCCCCC--------ceeeEEEEeCCEEEEEcCCCCCCCCcccccccC
Q 010770 198 GGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSS--------RCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYN 267 (501)
Q Consensus 198 ~~~~~~~d~~~l~~~~~Yd~~t~~--W~~~~~~g~~p~~--------r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 267 (501)
..+..+|+.+++ |+... ..+.. ......++.++.+|+..+..
T Consensus 132 ------------g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------------- 183 (238)
T PF13360_consen 132 ------------GKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------------- 183 (238)
T ss_dssp ------------SEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEEEECCTTEEEEECCTS-------------
T ss_pred ------------CcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccceEEECCEEEEEcCCC-------------
Confidence 334566877654 55433 12111 11234445667888877532
Q ss_pred eEEEEEcCCCc--eEEcccCCCCCCcccceEEEEECCEEEEEc
Q 010770 268 DTIILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (501)
Q Consensus 268 ~v~~yd~~~~~--W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 308 (501)
.+..+|..+.. |+.. ... ........++.+|+..
T Consensus 184 ~~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLYVTS 219 (238)
T ss_dssp SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE
T ss_pred eEEEEECCCCCEEEEec-CCC------ccCCceeeCCEEEEEe
Confidence 25666988886 7443 211 2222445567777776
No 85
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.96 E-value=13 Score=34.40 Aligned_cols=110 Identities=12% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEE
Q 010770 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (501)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (501)
.++.++++|+.+ ..+.+||..++.-..... ............-++..+++|+. ...+.+||
T Consensus 19 ~~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~~ 79 (289)
T cd00200 19 PDGKLLATGSGD-----GTIKVWDLETGELLRTLK---------GHTGPVRDVAASADGTYLASGSS-----DKTIRLWD 79 (289)
T ss_pred CCCCEEEEeecC-----cEEEEEEeeCCCcEEEEe---------cCCcceeEEEECCCCCEEEEEcC-----CCeEEEEE
Confidence 334666776642 357788887665222110 01111112222224445666654 24688888
Q ss_pred CCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceE
Q 010770 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (501)
Q Consensus 109 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 166 (501)
..+++....-. . ......++....++.+++.|+.+ ..+..||+.+.+-.
T Consensus 80 ~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ 128 (289)
T cd00200 80 LETGECVRTLT---G-HTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCL 128 (289)
T ss_pred cCcccceEEEe---c-cCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEE
Confidence 88753222211 1 11112233334444666666633 34888998755433
No 86
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.76 E-value=14 Score=34.27 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=32.1
Q ss_pred CEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
+.+++.|+.+ ..+..||+.+.+-...-. .......++....++.+++.|+.+ ..+.+||+.+.+
T Consensus 105 ~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSRD-----KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecCC-----CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccc
Confidence 4566665522 468889988654333221 111112233333444555555422 348888887543
No 87
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.47 E-value=24 Score=36.60 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=77.8
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (501)
..++++|..+++-..+.. .+.. ..+.....++ +|++....++ ..+++.+|+.+.+.+.+.. .... .
T Consensus 228 ~~l~~~dl~~g~~~~l~~---~~g~--~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~---~~~~--~ 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS---FRGI--NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTN---HFGI--D 294 (433)
T ss_pred cEEEEEECCCCCEEEecc---CCCC--ccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECcc---CCCC--c
Confidence 569999999888777753 2211 1122333344 5554433322 2579999999988777652 1111 1
Q ss_pred eeEEEe-CC-EEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCC
Q 010770 181 HTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (501)
Q Consensus 181 ~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~ 258 (501)
...... ++ +|++.....+. ..++.+|..+...+.+...+... ...+....+..|++..+...
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~----------~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~~~~--- 358 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGR----------PQIYRVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHGSGG--- 358 (433)
T ss_pred cceEECCCCCEEEEEECCCCC----------ceEEEEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEECCCC---
Confidence 112222 44 44444322211 23455688888888776322111 11122223445555544211
Q ss_pred CcccccccCeEEEEEcCCCceEEccc
Q 010770 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
...++++|+.+...+.+..
T Consensus 359 -------~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 -------QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred -------ceeEEEEECCCCCeEECCC
Confidence 1378999999888887754
No 88
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.15 E-value=16 Score=37.52 Aligned_cols=191 Identities=12% Similarity=0.084 Sum_probs=99.4
Q ss_pred CCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcc------cccEEEEE
Q 010770 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW------LSDVYVLD 159 (501)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~yd 159 (501)
+++.++++=..++.-...+.++|+.+++...-. ++.+... +++...+++.+++...+.... ...++++.
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----IENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----EEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----ccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 566666654444455567999999999654322 2222222 255566666666666655433 67789998
Q ss_pred CCCCceE--EcccCCCCCCCCc-ceeEEEe-CC-EEEEEcccCCCCCcccccccccccccccCCCC-----ceEEeecCC
Q 010770 160 TISLEWM--QLPVTGSVPPPRC-GHTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETP-----GWTQLKLPG 229 (501)
Q Consensus 160 ~~t~~W~--~~~~~~~~p~~r~-~~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~-----~W~~~~~~g 229 (501)
+.+..-. .+- ..+.... ...+..- ++ .|+|.-..... .+++| ..|.... .|..+..
T Consensus 209 ~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~------~~d~~~~~~~~~~~~~l~~-- 274 (414)
T PF02897_consen 209 LGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVY------LLDLDDGGSPDAKPKLLSP-- 274 (414)
T ss_dssp TTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEE------EEECCCTTTSS-SEEEEEE--
T ss_pred CCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEE------EEeccccCCCcCCcEEEeC--
Confidence 8877654 221 1112222 2222222 33 44443332211 23344 4466654 7888762
Q ss_pred CCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCc---eEE-cccCCCCCCcccceEEEEECCEEE
Q 010770 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ---WKR-LPIGNEPPPARAYHSMTCLGSLYL 305 (501)
Q Consensus 230 ~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~---W~~-v~~~~~~p~~r~~~~~~~~~~~iy 305 (501)
+.....+.+...++.+|+....+. ....+..+++.... |.. +.... ....--.+...+++|+
T Consensus 275 --~~~~~~~~v~~~~~~~yi~Tn~~a---------~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 275 --REDGVEYYVDHHGDRLYILTNDDA---------PNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLV 340 (414)
T ss_dssp --SSSS-EEEEEEETTEEEEEE-TT----------TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEE
T ss_pred --CCCceEEEEEccCCEEEEeeCCCC---------CCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEE
Confidence 222233334446889998876433 34688999987765 664 33311 1223344556688888
Q ss_pred EEcc
Q 010770 306 LFGG 309 (501)
Q Consensus 306 v~GG 309 (501)
+.-=
T Consensus 341 l~~~ 344 (414)
T PF02897_consen 341 LSYR 344 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.52 E-value=27 Score=35.81 Aligned_cols=216 Identities=18% Similarity=0.156 Sum_probs=101.4
Q ss_pred CCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEE
Q 010770 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (501)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (501)
.+|+++..|+..+ .+-+||..+..- +.... +...|..+ -..+..++.++++|+-+. .+-.+|
T Consensus 78 ~DG~LlaaGD~sG-----~V~vfD~k~r~i--LR~~~----ah~apv~~--~~f~~~d~t~l~s~sDd~-----v~k~~d 139 (487)
T KOG0310|consen 78 SDGRLLAAGDESG-----HVKVFDMKSRVI--LRQLY----AHQAPVHV--TKFSPQDNTMLVSGSDDK-----VVKYWD 139 (487)
T ss_pred cCCeEEEccCCcC-----cEEEeccccHHH--HHHHh----hccCceeE--EEecccCCeEEEecCCCc-----eEEEEE
Confidence 4567777777543 477888554211 11110 00111111 112335788999987432 233445
Q ss_pred CCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCC-ceEEcccCCCCCCCCcceeEEEe-
Q 010770 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLPVTGSVPPPRCGHTATMV- 186 (501)
Q Consensus 109 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~p~~r~~~~~~~~- 186 (501)
..+.. .+....+.----| ...+.-.++.|++-||+++. +-.||+.+. .|..-- +.-.|. -.++.+
T Consensus 140 ~s~a~-v~~~l~~htDYVR--~g~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~el---nhg~pV--e~vl~lp 206 (487)
T KOG0310|consen 140 LSTAY-VQAELSGHTDYVR--CGDISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVVEL---NHGCPV--ESVLALP 206 (487)
T ss_pred cCCcE-EEEEecCCcceeE--eeccccCCCeEEEecCCCce-----EEEEEeccCCceeEEe---cCCCce--eeEEEcC
Confidence 55444 3333211111111 22233345689999999875 667777766 343211 111111 122233
Q ss_pred C-CEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceee-----EEEE-eCCEEEEEcCCCCCCCC
Q 010770 187 E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH-----TITS-GGHYLLLFGGHGTGGWL 259 (501)
Q Consensus 187 ~-~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~-----s~~~-~~~~i~v~GG~~~~~~~ 259 (501)
+ ..|...||. .+-++|+.++ +.++..+..| ++.+ .++.-++.||.+
T Consensus 207 sgs~iasAgGn--------------~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD----- 259 (487)
T KOG0310|consen 207 SGSLIASAGGN--------------SVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD----- 259 (487)
T ss_pred CCCEEEEcCCC--------------eEEEEEecCC--------ceehhhhhcccceEEEEEeecCCceEeecccc-----
Confidence 3 345555552 2233343322 2333333323 1222 234556667655
Q ss_pred cccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCC
Q 010770 260 SRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK 313 (501)
Q Consensus 260 ~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 313 (501)
..|-+|| +..|+.+....- |.|-. ..++.-++...++|+.+|-
T Consensus 260 -------~~VKVfd--~t~~Kvv~s~~~-~~pvL-siavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 260 -------RHVKVFD--TTNYKVVHSWKY-PGPVL-SIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred -------cceEEEE--ccceEEEEeeec-cccee-eEEecCCCceEEEecccce
Confidence 3577888 555666665433 22222 2222336788888887764
No 90
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.20 E-value=24 Score=34.70 Aligned_cols=195 Identities=15% Similarity=0.221 Sum_probs=89.3
Q ss_pred ceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEE
Q 010770 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIA 82 (501)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~ 82 (501)
.|++++- + .+.|-..+....++++.++++|.. ..+++=.-.-.+|..+... ..-+-...
T Consensus 92 tW~~v~l---~--~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~----------~~gs~~~~ 150 (302)
T PF14870_consen 92 TWERVPL---S--SKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSE----------TSGSINDI 150 (302)
T ss_dssp S-EE---------TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S--------------EEEE
T ss_pred CcEEeec---C--CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccC----------CcceeEeE
Confidence 5888752 1 122333345566666788887653 2355544456699987632 11122222
Q ss_pred EEe-CCEEEEEccccCCCCCCcE-EEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEE-
Q 010770 83 VAI-DCHMFIFGGRFGSRRLGDF-WVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD- 159 (501)
Q Consensus 83 ~~~-~~~iyv~GG~~~~~~~~~~-~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd- 159 (501)
... ++.+++++. .+ .+ ...|+-...|.+.. .+..|...++....++.|++.+ ..+. +..=+
T Consensus 151 ~r~~dG~~vavs~-~G-----~~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~-----~~~s~~ 214 (302)
T PF14870_consen 151 TRSSDGRYVAVSS-RG-----NFYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQ-----IQFSDD 214 (302)
T ss_dssp EE-TTS-EEEEET-TS-----SEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTE-----EEEEE-
T ss_pred EECCCCcEEEEEC-cc-----cEEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCcE-----EEEccC
Confidence 333 455555542 21 23 34577777899987 6677888888888888888875 3222 22222
Q ss_pred -CCCCceEEcccCCCCCCCCcce--e-EEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCC
Q 010770 160 -TISLEWMQLPVTGSVPPPRCGH--T-ATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSS 234 (501)
Q Consensus 160 -~~t~~W~~~~~~~~~p~~r~~~--~-~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~ 234 (501)
-...+|.+.. .|....++ . ++.. ++.+++.||... ++. =.-..++|++.......|..
T Consensus 215 ~~~~~~w~~~~----~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-------l~~------S~DgGktW~~~~~~~~~~~n 277 (302)
T PF14870_consen 215 PDDGETWSEPI----IPIKTNGYGILDLAYRPPNEIWAVGGSGT-------LLV------STDGGKTWQKDRVGENVPSN 277 (302)
T ss_dssp TTEEEEE---B-----TTSS--S-EEEEEESSSS-EEEEESTT--------EEE------ESSTTSS-EE-GGGTTSSS-
T ss_pred CCCcccccccc----CCcccCceeeEEEEecCCCCEEEEeCCcc-------EEE------eCCCCccceECccccCCCCc
Confidence 3456677732 23323333 2 3333 578999998642 111 13467899988743333433
Q ss_pred ceeeEEEE-eCCEEEEEcCC
Q 010770 235 RCGHTITS-GGHYLLLFGGH 253 (501)
Q Consensus 235 r~~~s~~~-~~~~i~v~GG~ 253 (501)
.+ .++. ..++-+++|-.
T Consensus 278 ~~--~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 278 LY--RIVFVNPDKGFVLGQD 295 (302)
T ss_dssp ----EEEEEETTEEEEE-ST
T ss_pred eE--EEEEcCCCceEEECCC
Confidence 33 3443 55689998854
No 91
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.54 E-value=22 Score=33.47 Aligned_cols=164 Identities=11% Similarity=0.054 Sum_probs=87.5
Q ss_pred CCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccC-CCCC--CcEE
Q 010770 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG-SRRL--GDFW 105 (501)
Q Consensus 29 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~-~~~~--~~~~ 105 (501)
.++.+|+... ..+.++|+.+++++.+..... ...+..+.+-.++.-++.||+.--... .... ..++
T Consensus 50 ~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~----~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 50 PDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD----GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp TTSEEEEEET-------TCEEEEETTTTEEEEEEEEET----TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred cCCEEEEEEc-------CceEEEecCCCcEEEEeeccC----CCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence 4577777654 335677999999998876421 011333444444445678887632211 1111 5699
Q ss_pred EEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCc--eEEcccCCCCCCCC-cce
Q 010770 106 VLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR-CGH 181 (501)
Q Consensus 106 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r-~~~ 181 (501)
++++. ++...+.. .+ ..-.+.+...++ .+|+.-- ....+++|++.... +.....-...+... .--
T Consensus 119 ~~~~~-~~~~~~~~--~~---~~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 119 RIDPD-GKVTVVAD--GL---GFPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EEETT-SEEEEEEE--EE---SSEEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred EECCC-CeEEEEec--Cc---ccccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence 99999 77666653 11 122345555554 5776432 34559999886433 33222111222221 122
Q ss_pred eEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEee
Q 010770 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (501)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~ 226 (501)
.+++. +++||+..-. -..+.+||++...-..+.
T Consensus 188 G~~vD~~G~l~va~~~------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWG------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEBTTS-EEEEEET------------TTEEEEEETTSCEEEEEE
T ss_pred cceEcCCCCEEEEEcC------------CCEEEEECCCccEEEEEc
Confidence 34443 6799997321 145678899966666666
No 92
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.52 E-value=23 Score=33.74 Aligned_cols=157 Identities=15% Similarity=-0.002 Sum_probs=82.3
Q ss_pred CCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEE-EEecCCCCCCcCCc---------c---EEEEEcCcE
Q 010770 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDF---------A---AASAIGNRK 139 (501)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~p~~r~~---------~---~~~~~~~~~ 139 (501)
+|.+-.+...++.++.+|.-=. ..+.+.+||+.++.-. +.. +|.+... + -.++.++ -
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~-G 134 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDEN-G 134 (250)
T ss_pred EeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCC-C
Confidence 4555556667777887776522 4578999999988765 332 3333322 1 1233333 4
Q ss_pred EEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCC
Q 010770 140 IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET 219 (501)
Q Consensus 140 iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t 219 (501)
|+|+=........--+-..|+.+..-.+.-.+ ..+.+..+. +.++-|.||++-...... -.-.+.||..+
T Consensus 135 LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-~~~k~~~~n-aFmvCGvLY~~~s~~~~~--------~~I~yafDt~t 204 (250)
T PF02191_consen 135 LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-SYPKRSAGN-AFMVCGVLYATDSYDTRD--------TEIFYAFDTYT 204 (250)
T ss_pred EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-ccCchhhcc-eeeEeeEEEEEEECCCCC--------cEEEEEEECCC
Confidence 55543332222112234456665432222111 334444444 334468899987765432 14457889888
Q ss_pred CceEEeecCCCCCCCceeeEEEE---eCCEEEEEc
Q 010770 220 PGWTQLKLPGQAPSSRCGHTITS---GGHYLLLFG 251 (501)
Q Consensus 220 ~~W~~~~~~g~~p~~r~~~s~~~---~~~~i~v~G 251 (501)
++=..+.. ..+.+-..+++.. .+.+||++-
T Consensus 205 ~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 205 GKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred Cceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 77665542 2233333444544 345788865
No 93
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.37 E-value=27 Score=34.31 Aligned_cols=240 Identities=13% Similarity=0.131 Sum_probs=103.9
Q ss_pred ceEEeeeCCCCCCCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEE
Q 010770 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIA 82 (501)
Q Consensus 3 ~W~~~~~~~~~g~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~ 82 (501)
.|+++. .|....-..+...+++..|++|-.. .+++=+-.-.+|........ .+.....++.
T Consensus 7 ~W~~v~-------l~t~~~l~dV~F~d~~~G~~VG~~g------~il~T~DGG~tW~~~~~~~~------~~~~~~l~~I 67 (302)
T PF14870_consen 7 SWQQVS-------LPTDKPLLDVAFVDPNHGWAVGAYG------TILKTTDGGKTWQPVSLDLD------NPFDYHLNSI 67 (302)
T ss_dssp -EEEEE--------S-SS-EEEEEESSSS-EEEEETTT------EEEEESSTTSS-EE-----S-----------EEEEE
T ss_pred CcEEee-------cCCCCceEEEEEecCCEEEEEecCC------EEEEECCCCccccccccCCC------ccceeeEEEE
Confidence 689987 4555555566666667888887531 12222222358998763211 1111223344
Q ss_pred EEeCCEEEEEccccCCCCCCcEEEEEC-CCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECC
Q 010770 83 VAIDCHMFIFGGRFGSRRLGDFWVLDT-DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (501)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~~~yd~-~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 161 (501)
...++..|+.|.. .+..... .-.+|++++.. .+.+-..+....++++.++++|.. ..+|+=.-.
T Consensus 68 ~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~Dg 132 (302)
T PF14870_consen 68 SFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR------GAIYRTTDG 132 (302)
T ss_dssp EEETTEEEEEEET-------TEEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT--------EEEESST
T ss_pred EecCCceEEEcCC-------ceEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCC
Confidence 4567889988742 1222222 45679998742 223334456666777788887643 335555555
Q ss_pred CCceEEcccCCCCCCCCcceeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEE
Q 010770 162 SLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI 240 (501)
Q Consensus 162 t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~ 240 (501)
-.+|+.+... ... .-..+... ++++++++.... -+...|+....|+... .+..|.-.++
T Consensus 133 G~tW~~~~~~---~~g-s~~~~~r~~dG~~vavs~~G~------------~~~s~~~G~~~w~~~~----r~~~~riq~~ 192 (302)
T PF14870_consen 133 GKTWQAVVSE---TSG-SINDITRSSDGRYVAVSSRGN------------FYSSWDPGQTTWQPHN----RNSSRRIQSM 192 (302)
T ss_dssp TSSEEEEE-S--------EEEEEE-TTS-EEEEETTSS------------EEEEE-TT-SS-EEEE------SSS-EEEE
T ss_pred CCCeeEcccC---Ccc-eeEeEEECCCCcEEEEECccc------------EEEEecCCCccceEEc----cCccceehhc
Confidence 6789987621 111 11122222 556555553321 1223477777899886 3444555555
Q ss_pred EE-eCCEEEEEcCCCCCCCCcccccccCeEEEEE--cCCCceEEcccCCCCCCcccc-eEEEEE-CCEEEEEccCC
Q 010770 241 TS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILD--RLSAQWKRLPIGNEPPPARAY-HSMTCL-GSLYLLFGGFD 311 (501)
Q Consensus 241 ~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd--~~~~~W~~v~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~ 311 (501)
.. -++.+++.. ..+ .+..=+ -...+|.+.... .....++ ..++.. ++.+++.||..
T Consensus 193 gf~~~~~lw~~~-~Gg------------~~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 193 GFSPDGNLWMLA-RGG------------QIQFSDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EE-TTS-EEEEE-TTT------------EEEEEE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT
T ss_pred eecCCCCEEEEe-CCc------------EEEEccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEeCCc
Confidence 54 456777765 221 223333 345667773221 1112232 223333 58899988864
No 94
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.02 E-value=27 Score=33.86 Aligned_cols=160 Identities=21% Similarity=0.182 Sum_probs=83.5
Q ss_pred CCCCcC---cEEEEECCcEEEEEcccCC-----------------CccCCceEEEEcCCCcEEeceecCCCCCCCCCCCC
Q 010770 17 PQPRSG---HSAVNIGKSKVVVFGGLVD-----------------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (501)
Q Consensus 17 P~~R~~---h~~~~~~~~~iyv~GG~~~-----------------~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~ 76 (501)
|.||+| |.++...++ .+.||||-- ....+.|+.||.++++=+.+=... ..-+..
T Consensus 30 ~~P~SGGDTYNAV~~vDd-~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes-----ih~~~~ 103 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDD-FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES-----IHDKTK 103 (339)
T ss_pred CCCCCCCccceeeeeecc-eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc-----cCCccc
Confidence 556665 555554434 556788852 123578999999987533332110 011222
Q ss_pred cceeEEEE----eCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCccc
Q 010770 77 RAFHIAVA----IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWL 152 (501)
Q Consensus 77 R~~h~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~ 152 (501)
-++-.+-. +++.|++.=+ ++. .---+|..|..+..-+.+.. -|.+. .+ .+.|..+|-+ .....-.
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~~---~ps~K---G~-~~~D~a~F~i--~~~~~g~ 172 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARA-DGH-ANLGVYSLDRRTGKAEKLSS---NPSLK---GT-LVHDYACFGI--NNFHKGV 172 (339)
T ss_pred cccchhheeeCCCcCEEEEEec-CCc-ceeeeEEEcccCCceeeccC---CCCcC---ce-EeeeeEEEec--cccccCC
Confidence 22222212 2456666532 221 12247888888888888864 33331 22 2223233322 2233456
Q ss_pred ccEEEEECCCCce--EEccc----CCCCCCCCcceeEEEeCCEEEEE
Q 010770 153 SDVYVLDTISLEW--MQLPV----TGSVPPPRCGHTATMVEKRLLIY 193 (501)
Q Consensus 153 ~~~~~yd~~t~~W--~~~~~----~~~~p~~r~~~~~~~~~~~lyv~ 193 (501)
+.+.+||+.+++| +.... +|.....|....++...+++|.|
T Consensus 173 ~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 173 SGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred ceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 7899999999999 44432 22222234455566666665554
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.50 E-value=6.2 Score=40.26 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=65.5
Q ss_pred ccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCccccccc
Q 010770 129 FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWA 208 (501)
Q Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~ 208 (501)
-+++.+-.||+++..|+-.+. +-+||.++..--..- . ....|..---....++.+++.|+-..-
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~-----V~vfD~k~r~iLR~~-~-ah~apv~~~~f~~~d~t~l~s~sDd~v--------- 134 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGH-----VKVFDMKSRVILRQL-Y-AHQAPVHVTKFSPQDNTMLVSGSDDKV--------- 134 (487)
T ss_pred eeEEEeecCCeEEEccCCcCc-----EEEeccccHHHHHHH-h-hccCceeEEEecccCCeEEEecCCCce---------
Confidence 355666678999999986554 788886552211110 0 111111111112247889998875321
Q ss_pred ccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCC-ceE
Q 010770 209 LKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA-QWK 280 (501)
Q Consensus 209 l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-~W~ 280 (501)
+..+|.++..- ++...+....-|++ ++...++.|++.||+++ .|-.||+.+. .|.
T Consensus 135 ---~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg------------~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 135 ---VKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDG------------KVRLWDTRSLTSRV 190 (487)
T ss_pred ---EEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCc------------eEEEEEeccCCcee
Confidence 22334454442 33333433333433 34457889999999874 5778888776 443
No 96
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.35 E-value=39 Score=34.97 Aligned_cols=152 Identities=13% Similarity=0.204 Sum_probs=83.8
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (501)
.++|++|+.+++=+.+... + .. ..+.....|+ +|++.-...+ ..++|.+|..+..++++. ..+. ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~---~-g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT---~~~~--~d 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS---Q-GM-LVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQIT---NYPG--ID 279 (419)
T ss_pred CEEEEEECCCCcEEEEecC---C-Cc-EEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcc---cCCC--cc
Confidence 4799999998877777631 1 11 1112223344 5554433322 467999999999999886 2222 11
Q ss_pred eeEEEe--CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCC
Q 010770 181 HTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (501)
Q Consensus 181 ~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~ 258 (501)
...... +.+|++.-...+ ...++.+|+.+...+++...+. ........+..|..........
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~- 343 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNE- 343 (419)
T ss_pred CccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcc-
Confidence 111222 446776654322 1345666898888887764322 1122222344454444322111
Q ss_pred CcccccccCeEEEEEcCCCceEEcccC
Q 010770 259 LSRYDIYYNDTIILDRLSAQWKRLPIG 285 (501)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (501)
......+++++|+.+..++.+...
T Consensus 344 ---~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 344 ---FGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred ---cCCCCcEEEEEECCCCCeEECCCC
Confidence 001235899999999999988764
No 97
>PRK03629 tolB translocation protein TolB; Provisional
Probab=87.20 E-value=40 Score=34.95 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=94.3
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
..++++|+.+++-..+.... .. .......-++ +|++.....+ ..+++.+|..+.+..++.. .+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~---------~~-~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~---~~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP---------RH-NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTD---GR 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCC---------CC-cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccC---CC
Confidence 56899999888766654221 10 1111222244 5555432221 2369999999988887753 11
Q ss_pred CcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC-EEEEEcccCCCCCcc
Q 010770 125 SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIM 203 (501)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~ 203 (501)
. .........+++.+++..... ....+|.+|+.+..-+.+...+ .........-++ .|++.+.... .
T Consensus 287 ~--~~~~~~wSPDG~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g-~--- 354 (429)
T PRK03629 287 S--NNTEPTWFPDSQNLAYTSDQA--GRPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG-Q--- 354 (429)
T ss_pred C--CcCceEECCCCCEEEEEeCCC--CCceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC-C---
Confidence 1 122333344555444433211 1247899999888777764211 111111112244 4444433221 1
Q ss_pred cccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcc
Q 010770 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (501)
Q Consensus 204 ~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (501)
..++.+|+.++.++.+.... ........-+++.+++.+.... ...+++.+.+...=..+.
T Consensus 355 ------~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~---------~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 355 ------QHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM---------GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred ------ceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC---------ceEEEEEECCCCCeEECc
Confidence 23556788888888776221 0111122245565666554321 134666676554434443
No 98
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.98 E-value=18 Score=35.84 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=70.7
Q ss_pred ccEEEEECCCC-----ceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCc-eEEee
Q 010770 153 SDVYVLDTISL-----EWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG-WTQLK 226 (501)
Q Consensus 153 ~~~~~yd~~t~-----~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~-W~~~~ 226 (501)
..+..|++... +++.+. .....-.-.+++.+++++.+.-| +.+..|++..+. +....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g--------------~~l~v~~l~~~~~l~~~~ 124 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG--------------NKLYVYDLDNSKTLLKKA 124 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET--------------TEEEEEEEETTSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec--------------CEEEEEEccCcccchhhh
Confidence 66889998885 566554 22222224566667888666555 445577777777 77776
Q ss_pred cCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEE-CCEEE
Q 010770 227 LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYL 305 (501)
Q Consensus 227 ~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iy 305 (501)
....+-...++...++.|++ |-... .-.++.|+....+-..++.... +++..++..+ ++..+
T Consensus 125 ---~~~~~~~i~sl~~~~~~I~v-gD~~~----------sv~~~~~~~~~~~l~~va~d~~---~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 125 ---FYDSPFYITSLSVFKNYILV-GDAMK----------SVSLLRYDEENNKLILVARDYQ---PRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ---EE-BSSSEEEEEEETTEEEE-EESSS----------SEEEEEEETTTE-EEEEEEESS----BEEEEEEEE-SSSEE
T ss_pred ---eecceEEEEEEeccccEEEE-EEccc----------CEEEEEEEccCCEEEEEEecCC---CccEEEEEEecCCcEE
Confidence 33333355556667776654 43211 1234566776666777776433 7776777666 55555
Q ss_pred EEcc
Q 010770 306 LFGG 309 (501)
Q Consensus 306 v~GG 309 (501)
+++-
T Consensus 188 i~~D 191 (321)
T PF03178_consen 188 IVGD 191 (321)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5543
No 99
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=86.30 E-value=31 Score=32.73 Aligned_cols=258 Identities=14% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCccCCceEEEEcCC-CcEEeceecCCCCCCCCCCC-CcceeEEEEeCCEEEEEccc--cCCCCCCcEEEEE---CCCCe
Q 010770 41 DKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPG-PRAFHIAVAIDCHMFIFGGR--FGSRRLGDFWVLD---TDIWQ 113 (501)
Q Consensus 41 ~~~~~~~v~~yd~~t-~~W~~l~~~~~~~~~~~~p~-~R~~h~~~~~~~~iyv~GG~--~~~~~~~~~~~yd---~~t~~ 113 (501)
+-..+.-.|+=.... ++|+...-.... -+.-|. .-.|.+|-++++++|.+=-. -....+...+.|+ ...+.
T Consensus 39 Gv~~LhvaWVkSgDdG~TWttPEwLtd~--H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~sp 116 (367)
T PF12217_consen 39 GVDNLHVAWVKSGDDGQTWTTPEWLTDL--HPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSP 116 (367)
T ss_dssp SSTT-EEEEEEESSTTSS----EESS-----TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS-
T ss_pred CccceEEEEEEecCCCCcccCchhhhhc--CCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCC
Confidence 444555566666554 478775533211 011122 12334567789999876322 1233344455555 46778
Q ss_pred EEEEecCCCCCC-------cCCccEEEEEcCcEEEEEecCCCCcccccE--EEEE-----CCCCceEEcccCCCCCCCCc
Q 010770 114 WSELTSFGDLPS-------PRDFAAASAIGNRKIVMYGGWDGKKWLSDV--YVLD-----TISLEWMQLPVTGSVPPPRC 179 (501)
Q Consensus 114 W~~~~~~~~~p~-------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~yd-----~~t~~W~~~~~~~~~p~~r~ 179 (501)
|+.-.. +..|. ....|+.|.+.+ .-|.+|=.+++.....+ ..|. +....=+.++ ......-.
T Consensus 117 W~~teL-~~~~~~~~a~~~vTe~HSFa~i~~-~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~--sey~~~As 192 (367)
T PF12217_consen 117 WRITEL-GTIASFTSAGVAVTELHSFATIDD-NQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIP--SEYERNAS 192 (367)
T ss_dssp -EEEEE-ES-TT--------SEEEEEEE-SS-S-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE----GGG-TTEE
T ss_pred ceeeec-ccccccccccceeeeeeeeeEecC-CceeEEeccCCCCcceeeEEEecccccCCcceeeeech--hhhccccc
Confidence 865432 12333 455688888866 45677655444322222 2221 1111112221 11112222
Q ss_pred ceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCC----
Q 010770 180 GHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT---- 255 (501)
Q Consensus 180 ~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~---- 255 (501)
-.++-..++.||+.--.+.....- +.+.+-+.....|+.+..+...- -...-.+..++.||+||-...
T Consensus 193 EPCvkyY~g~LyLtTRgt~~~~~G------S~L~rs~d~G~~w~slrfp~nvH--htnlPFakvgD~l~mFgsERA~~EW 264 (367)
T PF12217_consen 193 EPCVKYYDGVLYLTTRGTLPTNPG------SSLHRSDDNGQNWSSLRFPNNVH--HTNLPFAKVGDVLYMFGSERAENEW 264 (367)
T ss_dssp EEEEEEETTEEEEEEEES-TTS---------EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-SSTT-S
T ss_pred cchhhhhCCEEEEEEcCcCCCCCc------ceeeeecccCCchhhcccccccc--ccCCCceeeCCEEEEEecccccccc
Confidence 334455699999986332221111 23344477788999997532111 111224568999999985322
Q ss_pred --CCCCcccccccCeEEEEEcC-------CCceEEcccC---CCCCCcccce-EEEEECCEE-EEEccCCC
Q 010770 256 --GGWLSRYDIYYNDTIILDRL-------SAQWKRLPIG---NEPPPARAYH-SMTCLGSLY-LLFGGFDG 312 (501)
Q Consensus 256 --~~~~~~~~~~~~~v~~yd~~-------~~~W~~v~~~---~~~p~~r~~~-~~~~~~~~i-yv~GG~~~ 312 (501)
+....++..-....+..-.. .-+|..+... +.....-.+- ++++-++-| |+|||.+-
T Consensus 265 E~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 265 EGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp STT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred ccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence 11123333333444444433 4444444321 1111122233 344446665 48999653
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.03 E-value=32 Score=32.71 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=54.5
Q ss_pred cEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccCCCCCCcEEEEEC
Q 010770 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDT 109 (501)
Q Consensus 31 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~ 109 (501)
..+|+.++. .+.+.+||+.+++....-.. ...++ ..++.- ++.+|+.++.+ +.+.+||+
T Consensus 43 ~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~--------~~~~~--~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 43 KLLYVCASD-----SDTIQVIDLATGEVIGTLPS--------GPDPE--LFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred CEEEEEECC-----CCeEEEEECCCCcEEEeccC--------CCCcc--EEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 356666653 24588999988776442111 11111 222222 34577665422 36889999
Q ss_pred CCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCce
Q 010770 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (501)
Q Consensus 110 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 165 (501)
.+.+-... .+......+++...++.+++++..+. +.+..||..+.+-
T Consensus 103 ~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 103 ETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred CCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 87643221 11112223445555667777765432 2356678776543
No 101
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.83 E-value=45 Score=34.22 Aligned_cols=111 Identities=13% Similarity=0.181 Sum_probs=59.8
Q ss_pred eEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCC-----ceEEcccCCCCCCCCccee-EEEe
Q 010770 113 QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-----EWMQLPVTGSVPPPRCGHT-ATMV 186 (501)
Q Consensus 113 ~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~p~~r~~~~-~~~~ 186 (501)
.|+.+. .|..+...++....++.+++.|... .++.-+.... +|..+. .+..+.... +...
T Consensus 271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~----~~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEAD----IKSRGFGILDVGYR 336 (398)
T ss_pred ceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeecc----cCCCCcceEEEEEc
Confidence 389886 5556655666666777888887531 1332222233 455543 222333333 3233
Q ss_pred -CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEE-eCCEEEEEcC
Q 010770 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGG 252 (501)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~-~~~~i~v~GG 252 (501)
++.+++.|....- ..-....++|+........+.+.+ .+.. .+++.|+.|-
T Consensus 337 ~d~~~~a~G~~G~v-------------~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 337 SKKEAWAAGGSGIL-------------LRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred CCCcEEEEECCCcE-------------EEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEeC
Confidence 5688888865321 111456778998763223333333 4443 4578888884
No 102
>PLN00181 protein SPA1-RELATED; Provisional
Probab=85.24 E-value=72 Score=36.05 Aligned_cols=64 Identities=13% Similarity=-0.054 Sum_probs=34.1
Q ss_pred CEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEE-cCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
+..++.|+.+ ..+.+||..+++-...-. . ....-.+++.. .++.+++.||.++. +.+||+.+..
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~~~~---~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~-----v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVTEMK---E-HEKRVWSIDYSSADPTLLASGSDDGS-----VKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEEEec---C-CCCCEEEEEEcCCCCCEEEEEcCCCE-----EEEEECCCCc
Confidence 4455555543 357888988765432211 1 11112233332 35577888876543 7788887654
No 103
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.82 E-value=26 Score=35.05 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=81.8
Q ss_pred CcEEEEECC-cEEEEEcccCCCccCCceEEEEcCCCc--EEeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccC
Q 010770 22 GHSAVNIGK-SKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFG 97 (501)
Q Consensus 22 ~h~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~ 97 (501)
-|++....+ ..+|+.. . -.+.|++|+..... ......... +....|| |.+..- +..+||..-
T Consensus 146 ~H~v~~~pdg~~v~v~d-l----G~D~v~~~~~~~~~~~l~~~~~~~~----~~G~GPR--h~~f~pdg~~~Yv~~e--- 211 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPD-L----GADRVYVYDIDDDTGKLTPVDSIKV----PPGSGPR--HLAFSPDGKYAYVVNE--- 211 (345)
T ss_dssp EEEEEE-TTSSEEEEEE-T----TTTEEEEEEE-TTS-TEEEEEEEEC----STTSSEE--EEEE-TTSSEEEEEET---
T ss_pred ceeEEECCCCCEEEEEe-c----CCCEEEEEEEeCCCceEEEeecccc----ccCCCCc--EEEEcCCcCEEEEecC---
Confidence 366666544 3566642 1 13568888887665 544322210 1122333 433333 357899864
Q ss_pred CCCCCcEEEEECC--CCeEEEEecCCCCCCcCC---ccEEEEE-cCc-EEEEEecCCCCcccccEEEEEC--CCCceEEc
Q 010770 98 SRRLGDFWVLDTD--IWQWSELTSFGDLPSPRD---FAAASAI-GNR-KIVMYGGWDGKKWLSDVYVLDT--ISLEWMQL 168 (501)
Q Consensus 98 ~~~~~~~~~yd~~--t~~W~~~~~~~~~p~~r~---~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~--~t~~W~~~ 168 (501)
..+.+.+|+.. +..++.+.....+|.... ..+.+.+ .++ .||+.-. ..+.+.+|++ .+++-+.+
T Consensus 212 --~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 212 --LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-----GSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp --TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-----TTTEEEEEEECTTTTTEEEE
T ss_pred --CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-----cCCEEEEEEEecCCCceEEE
Confidence 34456665554 777776654333433221 2223333 343 6777532 2556777776 45565555
Q ss_pred ccCCCCCC-CCcceeEEE--eCCEEEEEcccCCCCCcccccccccccccccCCCCceEEee
Q 010770 169 PVTGSVPP-PRCGHTATM--VEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (501)
Q Consensus 169 ~~~~~~p~-~r~~~~~~~--~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~ 226 (501)
. ..+. ...-..++. .++.|||.... .+. =.++..|.++..++.+.
T Consensus 285 ~---~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~---------v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 285 Q---TVPTGGKFPRHFAFSPDGRYLYVANQD-SNT---------VSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp E---EEEESSSSEEEEEE-TTSSEEEEEETT-TTE---------EEEEEEETTTTEEEEEE
T ss_pred E---EEeCCCCCccEEEEeCCCCEEEEEecC-CCe---------EEEEEEeCCCCcEEEec
Confidence 4 2221 111122323 24566665432 211 11223367788888765
No 104
>PRK02889 tolB translocation protein TolB; Provisional
Probab=84.56 E-value=53 Score=33.97 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=74.2
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 180 (501)
..++++|+.+++=..+.. .+. ...+.+...|+ +|++....++ ..++|.+|..+...+++.. .. ....
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g--~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKG--SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQ---SS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCC--CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCC---CC-CCCc
Confidence 469999999887666642 221 11223333444 5554433332 3579999998887776642 11 1111
Q ss_pred eeEEEeCC-EEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCC
Q 010770 181 HTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (501)
Q Consensus 181 ~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~ 259 (501)
.....-++ .|++.....+. ..++.++..+...+.+...+.. ....+....+..|+.......
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~----------~~Iy~~~~~~g~~~~lt~~g~~---~~~~~~SpDG~~Ia~~s~~~g---- 350 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGA----------PQIYRMPASGGAAQRVTFTGSY---NTSPRISPDGKLLAYISRVGG---- 350 (427)
T ss_pred CeEEcCCCCEEEEEecCCCC----------cEEEEEECCCCceEEEecCCCC---cCceEECCCCCEEEEEEccCC----
Confidence 11112244 45543322111 2344457777777777632211 011111113445554333221
Q ss_pred cccccccCeEEEEEcCCCceEEccc
Q 010770 260 SRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 260 ~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
...++++|+.+...+.+..
T Consensus 351 ------~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 351 ------AFKLYVQDLATGQVTALTD 369 (427)
T ss_pred ------cEEEEEEECCCCCeEEccC
Confidence 1368999999888777754
No 105
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=84.03 E-value=46 Score=32.82 Aligned_cols=107 Identities=10% Similarity=-0.067 Sum_probs=51.1
Q ss_pred cEEEEEcccCCCccCCceEEEEcC-CCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEE
Q 010770 31 SKVVVFGGLVDKRFLSDVVVYDID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLD 108 (501)
Q Consensus 31 ~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd 108 (501)
..+|+.+. . ...+..|++. ++++..+..... + ....|.+..-++ .+|+..- . .+.+.+|+
T Consensus 47 ~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~~-------~-~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~ 108 (330)
T PRK11028 47 RHLYVGVR-P----EFRVLSYRIADDGALTFAAESPL-------P-GSPTHISTDHQGRFLFSASY-N----ANCVSVSP 108 (330)
T ss_pred CEEEEEEC-C----CCcEEEEEECCCCceEEeeeecC-------C-CCceEEEECCCCCEEEEEEc-C----CCeEEEEE
Confidence 35666433 2 2557777775 456665543211 1 112233333344 5666532 1 24677787
Q ss_pred CCCCe--EEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCC
Q 010770 109 TDIWQ--WSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISL 163 (501)
Q Consensus 109 ~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~ 163 (501)
+.++. ...+.. .+....-|+++...++ .+|+.. . ..+.+.+||+.+.
T Consensus 109 ~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~-~----~~~~v~v~d~~~~ 158 (330)
T PRK11028 109 LDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPC-L----KEDRIRLFTLSDD 158 (330)
T ss_pred ECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEee-C----CCCEEEEEEECCC
Confidence 75431 112211 2222234555555444 555543 2 2345889998763
No 106
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=83.14 E-value=50 Score=32.56 Aligned_cols=104 Identities=10% Similarity=-0.038 Sum_probs=50.9
Q ss_pred EEEEEcccCCCccCCceEEEEcCC-CcEEeceecCCCCCCCCCCCCcceeEEEEe--CCEEEEEccccCCCCCCcEEEEE
Q 010770 32 KVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLD 108 (501)
Q Consensus 32 ~iyv~GG~~~~~~~~~v~~yd~~t-~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 108 (501)
++|+..+. ...+.+||+.+ +++..+..... ....+.++.. +..||+.+. . .+.+..|+
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~---------~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~ 63 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDV---------PGQVQPMVISPDKRHLYVGVR-P----EFRVLSYR 63 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEec---------CCCCccEEECCCCCEEEEEEC-C----CCcEEEEE
Confidence 46666443 24578888863 57766654321 1111222222 345777543 1 24577777
Q ss_pred CC-CCeEEEEecCCCCCCcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCC
Q 010770 109 TD-IWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTIS 162 (501)
Q Consensus 109 ~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t 162 (501)
+. ++++..+.. .+.+..-+.++...++ .+|+.. +. .+.+.+||+.+
T Consensus 64 ~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~ 111 (330)
T PRK11028 64 IADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDK 111 (330)
T ss_pred ECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECC
Confidence 75 456665543 2222111233333344 566553 22 24577787753
No 107
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.14 E-value=53 Score=32.85 Aligned_cols=220 Identities=13% Similarity=0.104 Sum_probs=101.1
Q ss_pred eEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEE--CCCCeEEEEecCCCCCC
Q 010770 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD--TDIWQWSELTSFGDLPS 125 (501)
Q Consensus 48 v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd--~~t~~W~~~~~~~~~p~ 125 (501)
++.||..+++++.+..... ...|.+ -+....++.||+..... .....+..|. .++.+.+.+.. .+.
T Consensus 17 ~~~~d~~~g~l~~~~~~~~------~~~Ps~-l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~---~~~ 84 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAE------GENPSW-LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNS---VPS 84 (345)
T ss_dssp EEEEETTTTEEEEEEEEEE------SSSECC-EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEE---EEE
T ss_pred EEEEcCCCCCceEeeeecC------CCCCce-EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeee---ecc
Confidence 4455669999988775321 111111 11111356788885533 1233455555 45568887764 332
Q ss_pred cCCccEEEEE--cCcEEEEEecCCCCcccccEEEEECCCC-ceEEcc------cCCCC---CCCCcceeEEEe--CCEEE
Q 010770 126 PRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLP------VTGSV---PPPRCGHTATMV--EKRLL 191 (501)
Q Consensus 126 ~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~------~~~~~---p~~r~~~~~~~~--~~~ly 191 (501)
.....+.+.+ .+..||+. -+. ...+.+|++..+ +-.... ..++. ...-.-|.+... ++.+|
T Consensus 85 ~g~~p~~i~~~~~g~~l~va-ny~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVA-NYG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEE-ETT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred CCCCcEEEEEecCCCEEEEE-Ecc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 2222222333 23355554 222 234667776653 222210 01111 122334555555 34677
Q ss_pred EEcccCCCCCcccccccccccccccCCCCc--eEEeecCCCCCCCceeeEEEE-eCCEEEEEcCCCCCCCCcccccccCe
Q 010770 192 IYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYND 268 (501)
Q Consensus 192 v~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~--W~~~~~~g~~p~~r~~~s~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~ 268 (501)
+.. .. .+.+..|+.+... .+........+-..-.|.+.. .+..+|+..-. .+.
T Consensus 160 v~d-lG-----------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~------------s~~ 215 (345)
T PF10282_consen 160 VPD-LG-----------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL------------SNT 215 (345)
T ss_dssp EEE-TT-----------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT------------TTE
T ss_pred EEe-cC-----------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC------------CCc
Confidence 753 11 2556666766655 544221101122222333333 44588998753 356
Q ss_pred EEEEEcC--CCceEEcccCCCCC---Ccc-cceEEEEE--CCEEEEEc
Q 010770 269 TIILDRL--SAQWKRLPIGNEPP---PAR-AYHSMTCL--GSLYLLFG 308 (501)
Q Consensus 269 v~~yd~~--~~~W~~v~~~~~~p---~~r-~~~~~~~~--~~~iyv~G 308 (501)
|.+|+.. +..++.+......| ... ..+.++.. +..+|+.-
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 6666665 66666654432222 122 33334444 46677754
No 108
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.99 E-value=67 Score=33.20 Aligned_cols=186 Identities=15% Similarity=0.206 Sum_probs=90.0
Q ss_pred CCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC-cccccEEEEECCCCceEEcccCCCCCCC
Q 010770 99 RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPVTGSVPPP 177 (501)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~p~~ 177 (501)
....|+++++.+.++-.+++-.| .++.-.+....++.|.|.--.... .....+|..+....+-..+. .+
T Consensus 104 ~~taDly~v~~e~Ge~kRiTyfG----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln------lG 173 (668)
T COG4946 104 LQTADLYVVPSEDGEAKRITYFG----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN------LG 173 (668)
T ss_pred CccccEEEEeCCCCcEEEEEEec----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc------CC
Confidence 34568999999999999998643 222223334567788887543221 12234455554444344332 11
Q ss_pred CcceeEEEeCCEEEEEcccCCCC--------CcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEE
Q 010770 178 RCGHTATMVEKRLLIYGGRGGGG--------PIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLL 249 (501)
Q Consensus 178 r~~~~~~~~~~~lyv~GG~~~~~--------~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v 249 (501)
-.+..+..+-+.++|-.+.+- -.-..+|.- .....+++++- +++.... +-+++++++|.
T Consensus 174 --pathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis------~d~g~tFeK~v---dl~~~vS--~PmIV~~RvYF 240 (668)
T COG4946 174 --PATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWIS------SDGGKTFEKFV---DLDGNVS--SPMIVGERVYF 240 (668)
T ss_pred --ceeeEEEeCCEEEEccCcccCcccccccCCccceEEEE------ecCCcceeeee---ecCCCcC--CceEEcceEEE
Confidence 123333444466666433211 111222221 11222333333 2222111 33468899999
Q ss_pred EcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCCCCCccCcEEEecCCCCc
Q 010770 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDP 328 (501)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~~~~~~d~ 328 (501)
+.-..+- ..+|.-|++.+.-++...... ++.--+..+++-+|| ..-.|+|.|++..|.
T Consensus 241 lsD~eG~----------GnlYSvdldGkDlrrHTnFtd-----YY~R~~nsDGkrIvF------q~~GdIylydP~td~ 298 (668)
T COG4946 241 LSDHEGV----------GNLYSVDLDGKDLRRHTNFTD-----YYPRNANSDGKRIVF------QNAGDIYLYDPETDS 298 (668)
T ss_pred EecccCc----------cceEEeccCCchhhhcCCchh-----ccccccCCCCcEEEE------ecCCcEEEeCCCcCc
Confidence 8866543 346666776665555544432 111122334554444 233566765554433
No 109
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=80.85 E-value=84 Score=33.62 Aligned_cols=124 Identities=16% Similarity=0.056 Sum_probs=62.8
Q ss_pred CcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEE
Q 010770 30 KSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (501)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (501)
++.||+.... ..++.+|..++ .|+.-...... ..............+..+++||+.. ....++++
T Consensus 69 ~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~-~~~~~~~~~~~rg~av~~~~v~v~t------~dg~l~AL 135 (527)
T TIGR03075 69 DGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDD-VIPVMCCDVVNRGVALYDGKVFFGT------LDARLVAL 135 (527)
T ss_pred CCEEEEECCC------CcEEEEECCCCceeeEecCCCCcc-cccccccccccccceEECCEEEEEc------CCCEEEEE
Confidence 4788886542 35899998875 67653311100 0000001111122355677887642 12468999
Q ss_pred ECCCCe--EEEEecCCCCCCcC-CccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc--eEEcc
Q 010770 108 DTDIWQ--WSELTSFGDLPSPR-DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLP 169 (501)
Q Consensus 108 d~~t~~--W~~~~~~~~~p~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~ 169 (501)
|..+++ |+.-.. +..... ...+.++. ++.||+-...........++.||..|.+ |+.-.
T Consensus 136 Da~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 136 DAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 998875 654321 121111 11222334 5577764322222234568899998876 76543
No 110
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.53 E-value=54 Score=31.24 Aligned_cols=138 Identities=13% Similarity=0.122 Sum_probs=74.0
Q ss_pred cCCceEEEEcCCCcEE---eceecCCCCCCCCCCCCcceeE---EEEeCCEEEEEccccCCCCCCcEEEEECCCC----e
Q 010770 44 FLSDVVVYDIDNKLWF---QPECTGNGSNGQVGPGPRAFHI---AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW----Q 113 (501)
Q Consensus 44 ~~~~v~~yd~~t~~W~---~l~~~~~~~~~~~~p~~R~~h~---~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~----~ 113 (501)
..+.|.+||+.++.=. .++.... ....|-....++ .++.++-|+|+=........-.+-+.|+.+- +
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~---~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~t 163 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGY---NNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQT 163 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCcccc---ccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEE
Confidence 4688999999998655 3332211 001111112222 2344556766644332221122444565543 4
Q ss_pred EEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEe---CCEE
Q 010770 114 WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV---EKRL 190 (501)
Q Consensus 114 W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~---~~~l 190 (501)
|.. ..+....+.+..++ |.||++...+... ..-.+.||+.+++=..+.. +.+.+-..++++.. +++|
T Consensus 164 w~T-----~~~k~~~~naFmvC--GvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~L 233 (250)
T PF02191_consen 164 WNT-----SYPKRSAGNAFMVC--GVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKL 233 (250)
T ss_pred EEe-----ccCchhhcceeeEe--eEEEEEEECCCCC-cEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeE
Confidence 543 24555555555555 4899998765543 3345889999887765542 23333344555554 5689
Q ss_pred EEEc
Q 010770 191 LIYG 194 (501)
Q Consensus 191 yv~G 194 (501)
|++-
T Consensus 234 Y~wd 237 (250)
T PF02191_consen 234 YAWD 237 (250)
T ss_pred EEEE
Confidence 9874
No 111
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.37 E-value=59 Score=31.59 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCcEEEEECCCCeEEEEecCCCCCCcCCccEEEE--E---cCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCC
Q 010770 101 LGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASA--I---GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP 175 (501)
Q Consensus 101 ~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~--~---~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 175 (501)
.+.++.||+++.+-+.+=.. ....++.=++-+. + .++.|++.-+ +++. .-.+|..|..++.=+.+. .-|
T Consensus 77 YSHVH~yd~e~~~VrLLWke-sih~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh~-nLGvy~ldr~~g~~~~L~---~~p 150 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKE-SIHDKTKWAGEVSDILYDPYEDRLLLARA-DGHA-NLGVYSLDRRTGKAEKLS---SNP 150 (339)
T ss_pred cceEEEEEcCCCeEEEEEec-ccCCccccccchhheeeCCCcCEEEEEec-CCcc-eeeeEEEcccCCceeecc---CCC
Confidence 56799999988874333110 1222221111111 1 1236666533 3332 335899999999988887 444
Q ss_pred CCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCce--EEeecC----CCCCCCceeeEEEEeCCEEEE
Q 010770 176 PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW--TQLKLP----GQAPSSRCGHTITSGGHYLLL 249 (501)
Q Consensus 176 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W--~~~~~~----g~~p~~r~~~s~~~~~~~i~v 249 (501)
.+. .+.+++...|-+ .. .. .-++.+.+||+.+++| +..+.. |.....+..-.++...+++|.
T Consensus 151 s~K---G~~~~D~a~F~i---~~---~~---~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~fa 218 (339)
T PF09910_consen 151 SLK---GTLVHDYACFGI---NN---FH---KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFA 218 (339)
T ss_pred CcC---ceEeeeeEEEec---cc---cc---cCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEE
Confidence 332 222233333322 11 11 1247788999999999 433321 111122233344555566665
Q ss_pred E
Q 010770 250 F 250 (501)
Q Consensus 250 ~ 250 (501)
|
T Consensus 219 F 219 (339)
T PF09910_consen 219 F 219 (339)
T ss_pred E
Confidence 5
No 112
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=79.35 E-value=28 Score=29.17 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=51.8
Q ss_pred EeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC-cccccEEEE-ECC
Q 010770 84 AIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVL-DTI 161 (501)
Q Consensus 84 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~y-d~~ 161 (501)
.++|-+|-..-. .....+.+.+||..+.+|+.+...............+.+ +|+|-++.-.... ...-++|+. |..
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeeccc
Confidence 467777766554 334456799999999999998741111233334444455 4577666543322 234567877 566
Q ss_pred CCceEEcc
Q 010770 162 SLEWMQLP 169 (501)
Q Consensus 162 t~~W~~~~ 169 (501)
+.+|++..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 78899875
No 113
>PRK04043 tolB translocation protein TolB; Provisional
Probab=77.42 E-value=93 Score=32.17 Aligned_cols=192 Identities=11% Similarity=0.048 Sum_probs=101.5
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
.++|++|+.+++=..+.... ........+-++ +|.+.-...+ ..++|.+|..++.+++++. .+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~---~~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ----------GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITN---YP 276 (419)
T ss_pred CEEEEEECCCCcEEEEecCC----------CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEccc---CC
Confidence 48999999998877775321 111112223343 5554433222 3589999999999998864 22
Q ss_pred CcCCccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCC-EEEEEcccCCCCCc
Q 010770 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPI 202 (501)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~ 202 (501)
. .........|+ +|++.....+ ...+|++|+.+++.+++...+. ... ...-++ .|..... ......
T Consensus 277 ~--~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~-~~~~~~ 344 (419)
T PRK04043 277 G--IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSR-ETNNEF 344 (419)
T ss_pred C--ccCccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEc-CCCccc
Confidence 1 12223343444 5666554322 3579999999999988763221 122 222244 4444432 221111
Q ss_pred ccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCC-EEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEE
Q 010770 203 MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (501)
Q Consensus 203 ~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (501)
... ...++.+|+++..++.+...+ ....-...-++ .|+..... . -...++.++++.+.=..
T Consensus 345 ~~~---~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~---------~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 345 GKN---TFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-G---------NQSALGIIRLNYNKSFL 406 (419)
T ss_pred CCC---CcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-C---------CcEEEEEEecCCCeeEE
Confidence 000 134566699999998887421 11111222344 44444322 1 12467888877665444
Q ss_pred cc
Q 010770 282 LP 283 (501)
Q Consensus 282 v~ 283 (501)
++
T Consensus 407 l~ 408 (419)
T PRK04043 407 FP 408 (419)
T ss_pred ee
Confidence 44
No 114
>PRK02889 tolB translocation protein TolB; Provisional
Probab=75.97 E-value=1e+02 Score=31.88 Aligned_cols=145 Identities=16% Similarity=0.073 Sum_probs=74.0
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
..+|++|+.+++=..+... +. ...+....-++ +|++.....+ ..++|.+|..+....++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~~---------~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF---------KG-SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S 283 (427)
T ss_pred cEEEEEECCCCCEEEeecC---------CC-CccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C
Confidence 5699999998876555421 10 11122222244 5544333222 35799999988776666431 1
Q ss_pred CcCCccEEEEEcCcE-EEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEE-eCC-EEEEEcccCCCCC
Q 010770 125 SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM-VEK-RLLIYGGRGGGGP 201 (501)
Q Consensus 125 ~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~-~lyv~GG~~~~~~ 201 (501)
.. ....+...|++ |++.....+ ...+|.++..+.+.+.+...+ ........ -++ .|+..... ...
T Consensus 284 -~~-~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~-~g~- 351 (427)
T PRK02889 284 -GI-DTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRV-GGA- 351 (427)
T ss_pred -CC-CcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEcc-CCc-
Confidence 11 12233444554 444332221 246888998888877775222 11112222 244 45443322 111
Q ss_pred cccccccccccccccCCCCceEEee
Q 010770 202 IMGDLWALKGLIEEENETPGWTQLK 226 (501)
Q Consensus 202 ~~~d~~~l~~~~~Yd~~t~~W~~~~ 226 (501)
..++.+|+.+.....+.
T Consensus 352 --------~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 352 --------FKLYVQDLATGQVTALT 368 (427)
T ss_pred --------EEEEEEECCCCCeEEcc
Confidence 24567788888877665
No 115
>PRK01742 tolB translocation protein TolB; Provisional
Probab=74.84 E-value=1.1e+02 Score=31.67 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=35.3
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEec-CCCCcccccEEEEECCCCceEEcc
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG-WDGKKWLSDVYVLDTISLEWMQLP 169 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~t~~W~~~~ 169 (501)
..++.+|..+++-..+.. .+. ...+.+...|++.++++. .++. .++|.+|+.+.....+.
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g--~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRG--HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCC--ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeec
Confidence 468999998887666653 221 112233444554444433 2222 35899999888877764
No 116
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=72.11 E-value=1.3e+02 Score=31.26 Aligned_cols=196 Identities=13% Similarity=0.129 Sum_probs=97.1
Q ss_pred ECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEE
Q 010770 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (501)
Q Consensus 28 ~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (501)
++ ++||.+--..+ ..+++.-|+.-+.-.+-+...+ --|| -+..+++=.|| +.-.++|.|
T Consensus 234 V~-~RvYFlsD~eG---~GnlYSvdldGkDlrrHTnFtd-------YY~R----~~nsDGkrIvF------q~~GdIyly 292 (668)
T COG4946 234 VG-ERVYFLSDHEG---VGNLYSVDLDGKDLRRHTNFTD-------YYPR----NANSDGKRIVF------QNAGDIYLY 292 (668)
T ss_pred Ec-ceEEEEecccC---ccceEEeccCCchhhhcCCchh-------cccc----ccCCCCcEEEE------ecCCcEEEe
Confidence 45 67887765444 2346666666555444332111 1122 22234443333 122389999
Q ss_pred ECCCCeEEEEecCCCCCCcCCccEEEE-----------EcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCC
Q 010770 108 DTDIWQWSELTSFGDLPSPRDFAAASA-----------IGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPP 176 (501)
Q Consensus 108 d~~t~~W~~~~~~~~~p~~r~~~~~~~-----------~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~ 176 (501)
||++.+-+.+.- ++|..|.--..-. +.+|..+++-. -...+++++..+--.++. ....
T Consensus 293 dP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS------RGkaFi~~~~~~~~iqv~---~~~~ 361 (668)
T COG4946 293 DPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS------RGKAFIMRPWDGYSIQVG---KKGG 361 (668)
T ss_pred CCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEEe------cCcEEEECCCCCeeEEcC---CCCc
Confidence 999999888864 3344432111100 01222222211 112444444333323332 1111
Q ss_pred CCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCC
Q 010770 177 PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTG 256 (501)
Q Consensus 177 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~ 256 (501)
-|+.+ ...++.-.++|-..+ +.+.+||..+..-+++. .+..+.....+.-+++..+++...
T Consensus 362 VrY~r--~~~~~e~~vigt~dg-----------D~l~iyd~~~~e~kr~e----~~lg~I~av~vs~dGK~~vvaNdr-- 422 (668)
T COG4946 362 VRYRR--IQVDPEGDVIGTNDG-----------DKLGIYDKDGGEVKRIE----KDLGNIEAVKVSPDGKKVVVANDR-- 422 (668)
T ss_pred eEEEE--EccCCcceEEeccCC-----------ceEEEEecCCceEEEee----CCccceEEEEEcCCCcEEEEEcCc--
Confidence 22222 222344666665433 45678888888877775 344555444444555655555321
Q ss_pred CCCcccccccCeEEEEEcCCCceEEccc
Q 010770 257 GWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
-++|++|+++..-+.+..
T Consensus 423 ----------~el~vididngnv~~idk 440 (668)
T COG4946 423 ----------FELWVIDIDNGNVRLIDK 440 (668)
T ss_pred ----------eEEEEEEecCCCeeEecc
Confidence 368999998887776654
No 117
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=70.55 E-value=81 Score=32.02 Aligned_cols=240 Identities=12% Similarity=0.052 Sum_probs=104.3
Q ss_pred EEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEE-EEccccCCCCCCcE
Q 010770 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMF-IFGGRFGSRRLGDF 104 (501)
Q Consensus 26 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iy-v~GG~~~~~~~~~~ 104 (501)
+..++++-+||+|-.+ -...++..|+.+++-.+|+... .....+-..+.-+..+| +-.+ ..+
T Consensus 42 ~ft~dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~--------g~~~~g~~~s~~~~~~~Yv~~~-------~~l 104 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGP--------GDNTFGGFLSPDDRALYYVKNG-------RSL 104 (386)
T ss_dssp -B-TTS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS---------B-TTT-EE-TTSSEEEEEETT-------TEE
T ss_pred CcCCCCCEEEEEeccC--CCcceEEEEcccCEEEECccCC--------CCCccceEEecCCCeEEEEECC-------CeE
Confidence 3345566667766432 3467899999999999998431 11122222222245654 4433 368
Q ss_pred EEEECCCCeEEEEecCCCCCCcCCccEEEEE-cCcEEEEEecC----C--------------CCcccccEEEEECCCCce
Q 010770 105 WVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGW----D--------------GKKWLSDVYVLDTISLEW 165 (501)
Q Consensus 105 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~----~--------------~~~~~~~~~~yd~~t~~W 165 (501)
+..|+.|.+=+.+-. .|..-.+....+. .++.. ++|=. + .....+.+...|+.|++.
T Consensus 105 ~~vdL~T~e~~~vy~---~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 105 RRVDLDTLEERVVYE---VPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEEETTT--EEEEEE-----TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEEECCcCcEEEEEE---CCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 888988887666654 5554444333332 33332 22211 0 012456688889999888
Q ss_pred EEcccCCCCCCCCcceeEEEe-CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeC
Q 010770 166 MQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGG 244 (501)
Q Consensus 166 ~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~ 244 (501)
+.+-.. ..-.+|.-..- +..+++|-=.+.-...-.-+|.+ |.+......+.. .++....+|-.-..+
T Consensus 181 ~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i------~~dg~~~~~v~~--~~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 181 KVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI------NTDGSNVKKVHR--RMEGESVGHEFWVPD 248 (386)
T ss_dssp EEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE------ETTS---EESS-----TTEEEEEEEE-TT
T ss_pred eEEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEE------EcCCCcceeeec--CCCCcccccccccCC
Confidence 776421 11123333222 44555553222111111234544 555444444431 234445566555545
Q ss_pred C-EEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEccCC
Q 010770 245 H-YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (501)
Q Consensus 245 ~-~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 311 (501)
+ .|+..+.... + ..--+..||+.+..=+.+..+ ++..|-++..++++++--|.+
T Consensus 249 G~~i~y~~~~~~-~-------~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 249 GSTIWYDSYTPG-G-------QDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp SS-EEEEEEETT-T---------EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE--
T ss_pred CCEEEEEeecCC-C-------CceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCC
Confidence 4 3333333222 1 112377788887754444433 346677777888998877764
No 118
>PTZ00421 coronin; Provisional
Probab=69.63 E-value=1.6e+02 Score=31.28 Aligned_cols=64 Identities=9% Similarity=-0.037 Sum_probs=37.0
Q ss_pred CEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
+.+++.||.+ ..+.++|+.+++-...-. .. ...-.+++...++.+++.|+.++ .+.+||+.+.+
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~--~h--~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIK--CH--SDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEc--CC--CCceEEEEEECCCCEEEEecCCC-----EEEEEECCCCc
Confidence 3577777654 357888988765322211 11 11122333445667888887654 37889988765
No 119
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=69.43 E-value=1.6e+02 Score=31.18 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=60.9
Q ss_pred CcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCc-ceeEEEEeC-CEEEEEccccCCCCCCcEE
Q 010770 30 KSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPR-AFHIAVAID-CHMFIFGGRFGSRRLGDFW 105 (501)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R-~~h~~~~~~-~~iyv~GG~~~~~~~~~~~ 105 (501)
+++||+.... ..++.+|..++ .|+.-..... ....+. .....+..+ +.||+... ...++
T Consensus 61 ~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~-----~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSH------SALFALDAATGKVLWRYDPKLPA-----DRGCCDVVNRGVAYWDPRKVFFGTF------DGRLV 123 (488)
T ss_pred CCEEEEeCCC------CcEEEEECCCChhhceeCCCCCc-----cccccccccCCcEEccCCeEEEecC------CCeEE
Confidence 4788886542 46899998876 5876332110 000010 111223445 77776432 24689
Q ss_pred EEECCCCe--EEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC----cccccEEEEECCCCc--eEEcc
Q 010770 106 VLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVLDTISLE--WMQLP 169 (501)
Q Consensus 106 ~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~--W~~~~ 169 (501)
++|..+.+ |+.-......+......+.++. ++.+|+ |..+.. .....++.+|..|.+ |+.-.
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 99988764 7654321000000011222333 446554 432221 224568999998765 87543
No 120
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=68.22 E-value=29 Score=34.16 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=55.9
Q ss_pred cccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCc
Q 010770 212 LIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPA 291 (501)
Q Consensus 212 ~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~ 291 (501)
+-+++..|.+..+. +..-+.+-++..++++++|.|..+ +.+-.+|+..+.--++-....
T Consensus 342 ikvW~~st~efvRt-----l~gHkRGIAClQYr~rlvVSGSSD------------ntIRlwdi~~G~cLRvLeGHE---- 400 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRT-----LNGHKRGIACLQYRDRLVVSGSSD------------NTIRLWDIECGACLRVLEGHE---- 400 (499)
T ss_pred EEEEeccceeeehh-----hhcccccceehhccCeEEEecCCC------------ceEEEEeccccHHHHHHhchH----
Confidence 33445555444332 233445667778999998877533 678889988775444322111
Q ss_pred ccceEEEEECCEEEEEccCCCCCccCcEEEecCCCCccc
Q 010770 292 RAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIA 330 (501)
Q Consensus 292 r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~~~~~~d~~~ 330 (501)
.---++-.+++=+|-||++|.- .+|-|....||..
T Consensus 401 -eLvRciRFd~krIVSGaYDGki---kvWdl~aaldpra 435 (499)
T KOG0281|consen 401 -ELVRCIRFDNKRIVSGAYDGKI---KVWDLQAALDPRA 435 (499)
T ss_pred -HhhhheeecCceeeeccccceE---EEEecccccCCcc
Confidence 1122456788889999999863 3565555555533
No 121
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.07 E-value=1.2e+02 Score=29.31 Aligned_cols=183 Identities=15% Similarity=0.045 Sum_probs=103.0
Q ss_pred ceEEEEcCCCcEEeceecCCCCCCCCCCCCcc--eeEEEEe--CCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCC
Q 010770 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRA--FHIAVAI--DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (501)
Q Consensus 47 ~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~--~h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 122 (501)
-|-++|+++..-+..+ +|..+. +.-..+. .++++..|-..-. -.+|+.++.-+..+
T Consensus 125 aI~R~dpkt~evt~f~----------lp~~~a~~nlet~vfD~~G~lWFt~q~G~y------GrLdPa~~~i~vfp---- 184 (353)
T COG4257 125 AIGRLDPKTLEVTRFP----------LPLEHADANLETAVFDPWGNLWFTGQIGAY------GRLDPARNVISVFP---- 184 (353)
T ss_pred eeEEecCcccceEEee----------cccccCCCcccceeeCCCccEEEeeccccc------eecCcccCceeeec----
Confidence 5788888887776654 232222 2222333 3577776642111 15677766655544
Q ss_pred CCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCC-cceeEEEe--CCEEEEEcccCCC
Q 010770 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR-CGHTATMV--EKRLLIYGGRGGG 199 (501)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r-~~~~~~~~--~~~lyv~GG~~~~ 199 (501)
.|..-.-+.+|+..|+.+|+.-= .-+-+-+.|+.+..=+.++ .|.+. .+.--+.. -+++++.-
T Consensus 185 aPqG~gpyGi~atpdGsvwyasl-----agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~witt----- 250 (353)
T COG4257 185 APQGGGPYGICATPDGSVWYASL-----AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITT----- 250 (353)
T ss_pred cCCCCCCcceEECCCCcEEEEec-----cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEec-----
Confidence 45555567788888888887521 1234667777777555443 22221 11111111 35666641
Q ss_pred CCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCce
Q 010770 200 GPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (501)
Q Consensus 200 ~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 279 (501)
|.--.+++||+.+..|..-+.++..|.+ ...-+-..+++++.- .-.+.+.+||+.+.+.
T Consensus 251 -------wg~g~l~rfdPs~~sW~eypLPgs~arp--ys~rVD~~grVW~se------------a~agai~rfdpeta~f 309 (353)
T COG4257 251 -------WGTGSLHRFDPSVTSWIEYPLPGSKARP--YSMRVDRHGRVWLSE------------ADAGAIGRFDPETARF 309 (353)
T ss_pred -------cCCceeeEeCcccccceeeeCCCCCCCc--ceeeeccCCcEEeec------------cccCceeecCcccceE
Confidence 1124567889999999988766544332 222222345566522 1236789999999999
Q ss_pred EEccc
Q 010770 280 KRLPI 284 (501)
Q Consensus 280 ~~v~~ 284 (501)
+.++.
T Consensus 310 tv~p~ 314 (353)
T COG4257 310 TVLPI 314 (353)
T ss_pred EEecC
Confidence 88776
No 122
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=65.12 E-value=1.7e+02 Score=30.03 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=66.0
Q ss_pred cceEEeeeCCCCCCCCC-C-CcCcEEEE--ECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCc
Q 010770 2 HYWVRASSSDFGGTVPQ-P-RSGHSAVN--IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPR 77 (501)
Q Consensus 2 ~~W~~~~~~~~~g~~P~-~-R~~h~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R 77 (501)
..|+++.. |. + +.-..+.. .+....+++|-.. -|..=+-.-.+|........ .......
T Consensus 75 ~~W~q~~~-------p~~~~~~L~~V~F~~~d~~~GwAVG~~G------~IL~T~DGG~tW~~~~~~~~----~~~~~~~ 137 (398)
T PLN00033 75 SEWEQVDL-------PIDPGVVLLDIAFVPDDPTHGFLLGTRQ------TLLETKDGGKTWVPRSIPSA----EDEDFNY 137 (398)
T ss_pred CccEEeec-------CCCCCCceEEEEeccCCCCEEEEEcCCC------EEEEEcCCCCCceECccCcc----ccccccc
Confidence 36888862 22 2 23334444 2445778877632 12222223458988542110 0011111
Q ss_pred ceeEEEEeCCEEEEEccccCCCCCCcEEEEEC--CCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccE
Q 010770 78 AFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT--DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDV 155 (501)
Q Consensus 78 ~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (501)
....+...++..|+.|-. + .+|-. .-.+|+.+.....+|.. .+....++++.++++|.. ..+
T Consensus 138 ~l~~v~f~~~~g~~vG~~-G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v 201 (398)
T PLN00033 138 RFNSISFKGKEGWIIGKP-A-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAI 201 (398)
T ss_pred ceeeeEEECCEEEEEcCc-e-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc------ceE
Confidence 234455567788888632 1 22222 34679987642223333 233444555567777742 225
Q ss_pred EEEECCCCceEEc
Q 010770 156 YVLDTISLEWMQL 168 (501)
Q Consensus 156 ~~yd~~t~~W~~~ 168 (501)
++=+-.-.+|+.+
T Consensus 202 ~~S~D~G~tW~~~ 214 (398)
T PLN00033 202 YVTSNAGRNWKAA 214 (398)
T ss_pred EEECCCCCCceEc
Confidence 5544456789986
No 123
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=64.91 E-value=2e+02 Score=30.77 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=51.0
Q ss_pred EEEeCCEEEEEccccCCCCCCcEEEEECCCCe--EEEEecCC-CC-C---CcCCccEEEEEcCcEEEEEecCCCCccccc
Q 010770 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFG-DL-P---SPRDFAAASAIGNRKIVMYGGWDGKKWLSD 154 (501)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~-~~-p---~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (501)
-++.++.||+... ...++++|..+.+ |+.-.... .. + ......+ +++.+++||+.. . ...
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg-~av~~~~v~v~t-~-----dg~ 131 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG-VALYDGKVFFGT-L-----DAR 131 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCccccccccccccccc-ceEECCEEEEEc-C-----CCE
Confidence 4567889998643 2368899988764 76543210 00 0 0001112 233355777632 2 235
Q ss_pred EEEEECCCCc--eEEcccCCCCCC-CCcceeEEEeCCEEEEE
Q 010770 155 VYVLDTISLE--WMQLPVTGSVPP-PRCGHTATMVEKRLLIY 193 (501)
Q Consensus 155 ~~~yd~~t~~--W~~~~~~~~~p~-~r~~~~~~~~~~~lyv~ 193 (501)
++++|..|.+ |+.-.. .... .....+.++.++++|+-
T Consensus 132 l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred EEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEe
Confidence 8999998876 765321 1111 11223445567877764
No 124
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=64.45 E-value=1.9e+02 Score=30.45 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=38.3
Q ss_pred cEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCC----CCCCcE
Q 010770 31 SKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS----RRLGDF 104 (501)
Q Consensus 31 ~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~----~~~~~~ 104 (501)
++||+... ...++.+|..++ .|+.-.... ..+.-....+.++.++.+|+ |..... .....+
T Consensus 111 ~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~------~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v 177 (488)
T cd00216 111 RKVFFGTF------DGRLVALDAETGKQVWKFGNNDQ------VPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGAL 177 (488)
T ss_pred CeEEEecC------CCeEEEEECCCCCEeeeecCCCC------cCcceEecCCCEEECCEEEE-eccccccccCCCCcEE
Confidence 67776432 246889998865 677632110 00000012233445666554 432221 223578
Q ss_pred EEEECCCCe--EEEE
Q 010770 105 WVLDTDIWQ--WSEL 117 (501)
Q Consensus 105 ~~yd~~t~~--W~~~ 117 (501)
+++|..+++ |+.-
T Consensus 178 ~alD~~TG~~~W~~~ 192 (488)
T cd00216 178 RAYDVETGKLLWRFY 192 (488)
T ss_pred EEEECCCCceeeEee
Confidence 999998764 7653
No 125
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=64.32 E-value=1.5e+02 Score=29.20 Aligned_cols=120 Identities=16% Similarity=0.204 Sum_probs=70.1
Q ss_pred CceEEEEcCCC-----cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCCe-EEEEec
Q 010770 46 SDVVVYDIDNK-----LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ-WSELTS 119 (501)
Q Consensus 46 ~~v~~yd~~t~-----~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~ 119 (501)
..+.+|+.... ++..+.... .+-.-++.+.++++|.+.-| +.+.+|+....+ +.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~---------~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE---------VKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE---------ESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEe---------ecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhhe
Confidence 66999999985 666665431 12224667777888666655 468888888777 877764
Q ss_pred CCCCCCcCCccEEEEEcCcEEEEEecCCCCccccc--EEEEECCCCceEEcccCCCCCCCCcceeEEEe-CCEEEEEc
Q 010770 120 FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSD--VYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYG 194 (501)
Q Consensus 120 ~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~G 194 (501)
...+....++.+.++ .|++ |-. ..+ ++.|+....+-..++ .-..++...++..+ ++..++.+
T Consensus 126 ---~~~~~~i~sl~~~~~-~I~v-gD~-----~~sv~~~~~~~~~~~l~~va---~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 126 ---YDSPFYITSLSVFKN-YILV-GDA-----MKSVSLLRYDEENNKLILVA---RDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp ---E-BSSSEEEEEEETT-EEEE-EES-----SSSEEEEEEETTTE-EEEEE---EESS-BEEEEEEEE-SSSEEEEE
T ss_pred ---ecceEEEEEEecccc-EEEE-EEc-----ccCEEEEEEEccCCEEEEEE---ecCCCccEEEEEEecCCcEEEEE
Confidence 334444445555655 5554 432 223 456687666677776 33445655566555 55544443
No 126
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=64.19 E-value=1.7e+02 Score=29.67 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=52.7
Q ss_pred CCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe---CCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCC
Q 010770 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFG 121 (501)
Q Consensus 45 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~ 121 (501)
.+.+.+.|..+.+=...- +.....|..... +.++|+.+. + ..+-++|+.+.+-. ..
T Consensus 15 ~~~v~viD~~t~~~~~~i-----------~~~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~v--~~-- 73 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARI-----------PTGGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKVV--AT-- 73 (369)
T ss_dssp GTEEEEEETTT-SEEEEE-----------E-STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSEE--EE--
T ss_pred CCEEEEEECCCCeEEEEE-----------cCCCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccEE--EE--
Confidence 356888998886533321 222223554433 457999853 2 36889999988732 21
Q ss_pred CCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEE
Q 010770 122 DLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (501)
Q Consensus 122 ~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 167 (501)
.+.+....+.+...+++..+.+.+. .+.+.++|..|.+=.+
T Consensus 74 -i~~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 74 -IKVGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLEPVK 114 (369)
T ss_dssp -EE-SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--EEE
T ss_pred -EecCCCcceEEEcCCCCEEEEEecC----CCceeEecccccccee
Confidence 3344445556655566555555443 3458889988876443
No 127
>smart00284 OLF Olfactomedin-like domains.
Probab=62.94 E-value=1.4e+02 Score=28.44 Aligned_cols=157 Identities=11% Similarity=-0.014 Sum_probs=78.2
Q ss_pred CCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcC----C-----ccE---EEEEcCcEE
Q 010770 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPR----D-----FAA---ASAIGNRKI 140 (501)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r----~-----~~~---~~~~~~~~i 140 (501)
+|.+-.+...++.++.+|.--. ....+.+||..+.+-..... +|.+. . +++ .++.++| |
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~---Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-L 140 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPL---LNGAGYNNRFPYAWGGFSDIDLAVDENG-L 140 (255)
T ss_pred CCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEe---cCccccccccccccCCCccEEEEEcCCc-e
Confidence 4666677778888999988532 23679999999987653332 33321 1 111 2233343 4
Q ss_pred EEE-ecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCC
Q 010770 141 VMY-GGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET 219 (501)
Q Consensus 141 yv~-GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t 219 (501)
+++ ......+ .--+-..|+.+..-.+.-.+ ..+....+ .+.++-|.||++-...... -.-.+.||..+
T Consensus 141 WvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T-~~~k~sa~-naFmvCGvLY~~~s~~~~~--------~~I~yayDt~t 209 (255)
T smart00284 141 WVIYATEQNAG-KIVISKLNPATLTIENTWIT-TYNKRSAS-NAFMICGILYVTRSLGSKG--------EKVFYAYDTNT 209 (255)
T ss_pred EEEEeccCCCC-CEEEEeeCcccceEEEEEEc-CCCccccc-ccEEEeeEEEEEccCCCCC--------cEEEEEEECCC
Confidence 333 2211111 11133566665543333211 23333333 3344568899985322211 13467888887
Q ss_pred CceEEeecCCCCCCCceeeEEEE---eCCEEEEEc
Q 010770 220 PGWTQLKLPGQAPSSRCGHTITS---GGHYLLLFG 251 (501)
Q Consensus 220 ~~W~~~~~~g~~p~~r~~~s~~~---~~~~i~v~G 251 (501)
++=..+.. +.+..-..+++.- .+.+||+.-
T Consensus 210 ~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 210 GKEGHLDI--PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred Cccceeee--eeccccccceeceeCCCCCeEEEEe
Confidence 66443331 1222223334443 345787754
No 128
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=62.60 E-value=1.5e+02 Score=28.37 Aligned_cols=224 Identities=15% Similarity=0.162 Sum_probs=93.7
Q ss_pred cEEEEECCcEEEEEccc--CCCccCCceEEEE---cCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccC
Q 010770 23 HSAVNIGKSKVVVFGGL--VDKRFLSDVVVYD---IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG 97 (501)
Q Consensus 23 h~~~~~~~~~iyv~GG~--~~~~~~~~v~~yd---~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~ 97 (501)
.+|-+++ +++|.+=-. -.+..+.....|+ +..+.|..-....-............-|+.+.+++.-|.+|=.++
T Consensus 78 mSMGv~~-NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 78 MSMGVVG-NRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp B-EEEET-TEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeec-ceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 3566677 466654322 1233333344444 567888775543321100111224456888889888888886666
Q ss_pred CCCCCcEEEEE-CC-----CC-eEEEEecCCCCCCcCCccEEEEEcCcEEEEEe-cCCCCcccccEEEEECCCCceEEcc
Q 010770 98 SRRLGDFWVLD-TD-----IW-QWSELTSFGDLPSPRDFAAASAIGNRKIVMYG-GWDGKKWLSDVYVLDTISLEWMQLP 169 (501)
Q Consensus 98 ~~~~~~~~~yd-~~-----t~-~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~t~~W~~~~ 169 (501)
+..-..+-.+- .. .. .=+.++. .. .+-..-.++-.-++.+|+.- |..+...-+.+.+-+.....|+.+.
T Consensus 157 D~sPRe~G~~yfs~~~~sp~~~vrr~i~s--ey-~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr 233 (367)
T PF12217_consen 157 DVSPRELGFLYFSDAFASPGVFVRRIIPS--EY-ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR 233 (367)
T ss_dssp SSSS-EEEEEEETTTTT-TT--EEEE--G--GG--TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE
T ss_pred CCCcceeeEEEecccccCCcceeeeechh--hh-ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc
Confidence 44433432221 11 11 1122221 11 11111112334466898875 4444455667888888888999986
Q ss_pred cCCCCCCCC--cceeEEEeCCEEEEEcccCCCCCc----ccc--------cccc-cccccccCCCCceEEeec---CCCC
Q 010770 170 VTGSVPPPR--CGHTATMVEKRLLIYGGRGGGGPI----MGD--------LWAL-KGLIEEENETPGWTQLKL---PGQA 231 (501)
Q Consensus 170 ~~~~~p~~r--~~~~~~~~~~~lyv~GG~~~~~~~----~~d--------~~~l-~~~~~Yd~~t~~W~~~~~---~g~~ 231 (501)
. |... ...-.+.+++.||+||-....+.. .++ .+.+ -.+..+.++.-+|..+.. .|..
T Consensus 234 f----p~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~i 309 (367)
T PF12217_consen 234 F----PNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGI 309 (367)
T ss_dssp -----TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SS
T ss_pred c----cccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecccc
Confidence 3 2222 223345679999999976542210 011 1111 123344666777877763 2333
Q ss_pred CCCceeeE-EEEeCCEE-EEEcCCC
Q 010770 232 PSSRCGHT-ITSGGHYL-LLFGGHG 254 (501)
Q Consensus 232 p~~r~~~s-~~~~~~~i-~v~GG~~ 254 (501)
.....+.+ .|+.++-| |+|||.+
T Consensus 310 vNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 310 VNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp S---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccccccceeEEEECCEEEEEecCcc
Confidence 33344444 45566654 5899864
No 129
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=62.55 E-value=71 Score=33.80 Aligned_cols=124 Identities=16% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCCCcCcEEEEECCcE-EEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeC--CEEEEEc
Q 010770 17 PQPRSGHSAVNIGKSK-VVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID--CHMFIFG 93 (501)
Q Consensus 17 P~~R~~h~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~--~~iyv~G 93 (501)
-.|+.|.-++...-.+ +|+.|- -++||++|+..++|...-... -.+--+|.++ +.++.+|
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~-----------~~~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETD-----------SGELNVVSINEEHGLLACG 193 (703)
T ss_pred ecCcCCccccccCCCccEEEeec------CcceEEEEccccccccccccc-----------cccceeeeecCccceEEec
Confidence 3456676666643233 555543 367999999999997632221 1222234443 4689999
Q ss_pred cccCCCCCCcEEEEECCCCeEE-EEecC---CCCCCcCC--ccEEEEEcC-cEEEEEecCCCCcccccEEEEECCCCceE
Q 010770 94 GRFGSRRLGDFWVLDTDIWQWS-ELTSF---GDLPSPRD--FAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (501)
Q Consensus 94 G~~~~~~~~~~~~yd~~t~~W~-~~~~~---~~~p~~r~--~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 166 (501)
|.++ .|+.+|+.+..-. .+... ...|..-. ..++..+.| +--+.+|-. ...+++||+.+.+=.
T Consensus 194 t~~g-----~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 194 TEDG-----VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASKPL 263 (703)
T ss_pred ccCc-----eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCCce
Confidence 8554 4677777654321 11110 11222211 133444544 333444432 234899998876533
Q ss_pred E
Q 010770 167 Q 167 (501)
Q Consensus 167 ~ 167 (501)
.
T Consensus 264 ~ 264 (703)
T KOG2321|consen 264 L 264 (703)
T ss_pred e
Confidence 3
No 130
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=62.19 E-value=1.4e+02 Score=28.17 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=78.9
Q ss_pred CCCCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEE
Q 010770 14 GTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIF 92 (501)
Q Consensus 14 g~~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~ 92 (501)
+..|.|-.+...+.-..+.|+..||- .-+++.|+++++-...-. -..-+-|+.+.-+. -=.+.
T Consensus 110 ~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r----------GHtDYvH~vv~R~~~~qils 173 (325)
T KOG0649|consen 110 DAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR----------GHTDYVHSVVGRNANGQILS 173 (325)
T ss_pred CcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc----------CCcceeeeeeecccCcceee
Confidence 34566666666665566789999983 448899999998877431 12234565555332 22344
Q ss_pred ccccCCCCCCcEEEEECCCCeEEEEec-CCCCCCcC--Ccc-EEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEc
Q 010770 93 GGRFGSRRLGDFWVLDTDIWQWSELTS-FGDLPSPR--DFA-AASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (501)
Q Consensus 93 GG~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~p~~r--~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 168 (501)
|+.++ .+-++|..|.+-.++-. .......| .+- -++.-.+..-.|.||- ..+-.++..+.+-+.+
T Consensus 174 G~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 174 GAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSESTCV 242 (325)
T ss_pred cCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCceEE
Confidence 55443 46678888877655432 11111222 121 1222234356666662 2245566666655554
Q ss_pred ccCCCCCCCCcceeEEEeCCEEEEEc
Q 010770 169 PVTGSVPPPRCGHTATMVEKRLLIYG 194 (501)
Q Consensus 169 ~~~~~~p~~r~~~~~~~~~~~lyv~G 194 (501)
- ++| -.-|-+..+++.+.+.|
T Consensus 243 f---pip--a~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 243 F---PIP--ARVHLVDFVDDCVLIGG 263 (325)
T ss_pred E---ecc--cceeEeeeecceEEEec
Confidence 3 222 22344445566666555
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=61.86 E-value=2.4e+02 Score=30.58 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=47.1
Q ss_pred CCCCCCcceeEEEe---CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCC-CCCCCceeeEEE-EeCCEE
Q 010770 173 SVPPPRCGHTATMV---EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG-QAPSSRCGHTIT-SGGHYL 247 (501)
Q Consensus 173 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g-~~p~~r~~~s~~-~~~~~i 247 (501)
.+|..+...+...+ ++++++.- . + ...++.++.++.+.+.+.... ....+-..+-++ ..|+.|
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s-~--------~---~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yi 490 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS-K--------N---IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYI 490 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe-c--------c---cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEE
Confidence 56666655555443 56776654 1 0 123444555665555543111 111111122222 367788
Q ss_pred EEEcCCCCCCCCcccccccCeEEEEEcCCCceEEccc
Q 010770 248 LLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 248 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
.+.++. ..+++|++++.+-..+..
T Consensus 491 aa~~t~-------------g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 491 AAISTR-------------GQIFVYNLETLESHLLKV 514 (691)
T ss_pred EEEecc-------------ceEEEEEcccceeecchh
Confidence 887754 358999999988777764
No 132
>PRK10115 protease 2; Provisional
Probab=60.51 E-value=2.7e+02 Score=30.87 Aligned_cols=217 Identities=11% Similarity=-0.036 Sum_probs=104.9
Q ss_pred EEEEECCcEEEEEcccCCC-ccCCceEEEEcCCCcE--EeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccCCC
Q 010770 24 SAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLW--FQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSR 99 (501)
Q Consensus 24 ~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W--~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~ 99 (501)
..+-..++.-+++...... ....++|++++.+..- ..+-.. +........... +++..++.... .
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---------~~~~~~~~~~~s~d~~~l~i~~~~--~ 244 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---------KDDTFYVSLHKTTSKHYVVIHLAS--A 244 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---------CCCCEEEEEEEcCCCCEEEEEEEC--C
Confidence 3444434444444444332 3457899999998833 223211 111222222223 33322233322 2
Q ss_pred CCCcEEEEEC--CCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECC-CCceEEcccCCCCCC
Q 010770 100 RLGDFWVLDT--DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVPP 176 (501)
Q Consensus 100 ~~~~~~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~p~ 176 (501)
..+.++.|+. .+..|..+.+ .+... .+... ..++.+|+.--.+.. ...+...++. +.+|+.+-+ ...
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~-~~~~~ly~~tn~~~~--~~~l~~~~~~~~~~~~~l~~---~~~ 314 (686)
T PRK10115 245 TTSEVLLLDAELADAEPFVFLP---RRKDH-EYSLD-HYQHRFYLRSNRHGK--NFGLYRTRVRDEQQWEELIP---PRE 314 (686)
T ss_pred ccccEEEEECcCCCCCceEEEE---CCCCC-EEEEE-eCCCEEEEEEcCCCC--CceEEEecCCCcccCeEEEC---CCC
Confidence 3467888884 3344433322 22211 12222 333588887654322 3346777776 678988762 211
Q ss_pred CCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEE----eCCEE-EEEc
Q 010770 177 PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS----GGHYL-LLFG 251 (501)
Q Consensus 177 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~----~~~~i-~v~G 251 (501)
.+.--.+...++.|++..-..+ ...+..+|..+.....+.. +.+........ .++.+ +.+.
T Consensus 315 ~~~i~~~~~~~~~l~~~~~~~g----------~~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~s 380 (686)
T PRK10115 315 NIMLEGFTLFTDWLVVEERQRG----------LTSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGYS 380 (686)
T ss_pred CCEEEEEEEECCEEEEEEEeCC----------EEEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEEe
Confidence 2222234445777777654332 2345556766555555431 11222211111 11333 3334
Q ss_pred CCCCCCCCcccccccCeEEEEEcCCCceEEcccC
Q 010770 252 GHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (501)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (501)
+.. ...++|.||+.+.+|+.+...
T Consensus 381 s~~----------~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 381 SMT----------TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred cCC----------CCCEEEEEECCCCcEEEEEec
Confidence 433 236899999999988877654
No 133
>smart00284 OLF Olfactomedin-like domains.
Probab=58.08 E-value=1.8e+02 Score=27.87 Aligned_cols=163 Identities=9% Similarity=0.010 Sum_probs=75.5
Q ss_pred CCCCCcCcEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeE---EEEeCCEEEEE
Q 010770 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI---AVAIDCHMFIF 92 (501)
Q Consensus 16 ~P~~R~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~---~~~~~~~iyv~ 92 (501)
+|.+=.|-..++++ +.+|.-- .....+.+||+.+.+=......+...-....|-...+++ .++.++-|+++
T Consensus 70 Lp~~~~GtG~VVYn-gslYY~~-----~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 70 LPHAGQGTGVVVYN-GSLYFNK-----FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred CCCccccccEEEEC-ceEEEEe-----cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 34444445555555 4555522 235779999999987653332111000001111111111 23334445544
Q ss_pred ccccCCCCCCcEEEEECCCC----eEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEc
Q 010770 93 GGRFGSRRLGDFWVLDTDIW----QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (501)
Q Consensus 93 GG~~~~~~~~~~~~yd~~t~----~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 168 (501)
=......-.=.+-+.|+.+- +|.. ..+....+.+..++ |.||+.-.... ....-.+.||+.+++=..+
T Consensus 144 Yat~~~~g~ivvSkLnp~tL~ve~tW~T-----~~~k~sa~naFmvC--GvLY~~~s~~~-~~~~I~yayDt~t~~~~~~ 215 (255)
T smart00284 144 YATEQNAGKIVISKLNPATLTIENTWIT-----TYNKRSASNAFMIC--GILYVTRSLGS-KGEKVFYAYDTNTGKEGHL 215 (255)
T ss_pred EeccCCCCCEEEEeeCcccceEEEEEEc-----CCCcccccccEEEe--eEEEEEccCCC-CCcEEEEEEECCCCcccee
Confidence 11111111112334566544 4544 24444444444444 48999854221 1223368899998764443
Q ss_pred ccCCCCCCCCcceeEEEe---CCEEEEEc
Q 010770 169 PVTGSVPPPRCGHTATMV---EKRLLIYG 194 (501)
Q Consensus 169 ~~~~~~p~~r~~~~~~~~---~~~lyv~G 194 (501)
.. +.+.....+++.-. +++||+.-
T Consensus 216 ~i--~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 216 DI--PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred ee--eeccccccceeceeCCCCCeEEEEe
Confidence 21 22333334444444 56888863
No 134
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=58.03 E-value=2.2e+02 Score=28.90 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=90.7
Q ss_pred CCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 45 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
.+.+.++|..+.+=...-.... .....+.+|...-.++..+..|++-- .....+|..|....+=..... +.
T Consensus 99 ~~~v~v~D~~tle~v~~I~~~~--~~~~~~~~Rv~aIv~s~~~~~fVv~l----kd~~~I~vVdy~d~~~~~~~~---i~ 169 (369)
T PF02239_consen 99 PGTVSVIDAETLEPVKTIPTGG--MPVDGPESRVAAIVASPGRPEFVVNL----KDTGEIWVVDYSDPKNLKVTT---IK 169 (369)
T ss_dssp TTEEEEEETTT--EEEEEE--E--E-TTTS---EEEEEE-SSSSEEEEEE----TTTTEEEEEETTTSSCEEEEE---EE
T ss_pred CCceeEeccccccceeeccccc--ccccccCCCceeEEecCCCCEEEEEE----ccCCeEEEEEeccccccceee---ec
Confidence 3568889988764333211110 00011344543333334555566643 234578888865542122221 44
Q ss_pred CcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeC-CEEEEEcccCCCCCcc
Q 010770 125 SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE-KRLLIYGGRGGGGPIM 203 (501)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~ 203 (501)
..+..|-+..-.+++.|+.+-. ..+.+-..|..+++-..+-..|..|.+..+..+.... +-++..+|.....-
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~-- 243 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI-- 243 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE--
T ss_pred ccccccccccCcccceeeeccc----ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec--
Confidence 5667777777666555554422 2447888999988766554344444444444443333 35565555432110
Q ss_pred cccccccccccccCCCCceEEeecCCCCCCCceeeEEEE--eCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCC
Q 010770 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (501)
Q Consensus 204 ~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (501)
.....+.+.++ ....|+.+. ..+....++.+.. .+..+|+---.+. -.+.+.++|..+.
T Consensus 244 -~~ig~~~v~v~--d~~~wkvv~---~I~~~G~glFi~thP~s~~vwvd~~~~~---------~~~~v~viD~~tl 304 (369)
T PF02239_consen 244 -PLIGTDPVSVH--DDYAWKVVK---TIPTQGGGLFIKTHPDSRYVWVDTFLNP---------DADTVQVIDKKTL 304 (369)
T ss_dssp -EEEE--TTT-S--TTTBTSEEE---EEE-SSSS--EE--TT-SEEEEE-TT-S---------SHT-EEEEECCGT
T ss_pred -ccccCCccccc--hhhcCeEEE---EEECCCCcceeecCCCCccEEeeccCCC---------CCceEEEEECcCc
Confidence 00001112222 335677665 2222222223222 3446666311111 1478999998887
No 135
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=56.43 E-value=11 Score=35.05 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=45.2
Q ss_pred CCCCccccccc--chhhHHHHHHHHHHHhcccccCCCCCCceeEEEEEecCCccccccchhHHHHHHhhh
Q 010770 431 STPRSIPIKEL--GPLLRDYQRLIARHLANLQSTELGLPGKEAYTFYHLKNSSQLHMVDIPKLLEEYKKL 498 (501)
Q Consensus 431 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (501)
...+++.|-|. ++++|+|+.|.+.+---+. ..++.|.....=-|+-|+ .|-||+-.+++.+|.+|
T Consensus 63 n~~esi~Lae~l~~k~m~~y~elar~~nIwlS--lgg~~~r~~~~~~k~~N~-hl~id~~G~i~a~Y~Kl 129 (295)
T KOG0807|consen 63 NPLESIELAEPLDGKFMEQYRELARSHNIWLS--LGGHHERSDDGNQKLRNT-HLLIDSKGEIRAEYQKL 129 (295)
T ss_pred CcccceecccccChHHHHHHHHHHHhcCeeEE--eccccCCCccccceeeee-EEEEcCCchHHHHHhhh
Confidence 46677888876 8999999999985543333 455666554322333343 47799999999999876
No 136
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=54.76 E-value=3e+02 Score=29.46 Aligned_cols=174 Identities=17% Similarity=0.119 Sum_probs=89.6
Q ss_pred EEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCc----------cccccc
Q 010770 139 KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI----------MGDLWA 208 (501)
Q Consensus 139 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~----------~~d~~~ 208 (501)
.+|+-++...... ..+-.+|+.+.+=.... .. . -.+..+-+-.+.|||..-....... ......
T Consensus 173 ~~y~p~~~~~~~~-~~i~s~dl~~~~~~~~~---~~-~-g~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (521)
T PF09826_consen 173 IIYFPGGPSGSNY-TTITSIDLDPDKASDST---SV-L-GSGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNE 246 (521)
T ss_pred eEEecCCCCCCcE-EEEEEEeCCCCCcccee---EE-E-ecCCEEEEeCCcEEEEEecccccccccchhccccccccCCC
Confidence 5666554443332 35667777443321111 00 0 0112222336788887654332100 001112
Q ss_pred ccccccccCCCCceEEee---cCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccC
Q 010770 209 LKGLIEEENETPGWTQLK---LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (501)
Q Consensus 209 l~~~~~Yd~~t~~W~~~~---~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (501)
...+++|+++....+... .+|.+ ...+++--.++.+-|+-..... .........|.++++|..-+.--++...
T Consensus 247 ~T~I~kf~~~~~~~~y~~sg~V~G~l---lnqFsmdE~~G~LRvaTT~~~~-~~~~~~~s~N~lyVLD~~L~~vG~l~~l 322 (521)
T PF09826_consen 247 STTIYKFALDGGKIEYVGSGSVPGYL---LNQFSMDEYDGYLRVATTSGNW-WWDSEDTSSNNLYVLDEDLKIVGSLEGL 322 (521)
T ss_pred ceEEEEEEccCCcEEEEEEEEECcEE---cccccEeccCCEEEEEEecCcc-cccCCCCceEEEEEECCCCcEeEEcccc
Confidence 345677777777776443 23322 3455666677777666543210 0011134668999998655555566554
Q ss_pred CCCCCcccceEEEEECCEEEEEccCCCCCccCcEEEecCCCCcc
Q 010770 286 NEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPI 329 (501)
Q Consensus 286 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~d~w~~~~~~d~~ 329 (501)
.|..|. +++=.+|++.|++. ....+-++.+++..+..
T Consensus 323 --a~gE~I-ysvRF~Gd~~Y~VT----FrqvDPLfviDLsdP~~ 359 (521)
T PF09826_consen 323 --APGERI-YSVRFMGDRAYLVT----FRQVDPLFVIDLSDPAN 359 (521)
T ss_pred --CCCceE-EEEEEeCCeEEEEE----EeecCceEEEECCCCCC
Confidence 344444 67778899999885 13455577777654333
No 137
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=54.20 E-value=2e+02 Score=27.27 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=77.2
Q ss_pred EEECCcEEEEEcccCCCccCCceEEEEcCC-CcEEeceecCCCCCCCCCCCCcceeEEEE--eCCEEEEEccccCCCCCC
Q 010770 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVA--IDCHMFIFGGRFGSRRLG 102 (501)
Q Consensus 26 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t-~~W~~l~~~~~~~~~~~~p~~R~~h~~~~--~~~~iyv~GG~~~~~~~~ 102 (501)
..+.++.+++..=.........+..|.... .+|...... .+.....+.+.+ -++.|+++-...... .
T Consensus 114 i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~--------~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~ 183 (275)
T PF13088_consen 114 IQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPI--------PDGQGECEPSIVELPDGRLLAVFRTEGND--D 183 (275)
T ss_dssp EEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEEC--------ECSEEEEEEEEEEETTSEEEEEEEECSST--E
T ss_pred eEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccc--------cccCCcceeEEEECCCCcEEEEEEccCCC--c
Confidence 344567777762111112233445555554 469887632 122244444443 256888886543111 3
Q ss_pred cEEEEECC-CCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcce
Q 010770 103 DFWVLDTD-IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (501)
Q Consensus 103 ~~~~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 181 (501)
-...+..+ -.+|+...+. .+|.+.....++...++.++++.........-.++.-.-...+|.....-.+-+...+++
T Consensus 184 ~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y 262 (275)
T PF13088_consen 184 IYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGY 262 (275)
T ss_dssp EEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEE
T ss_pred EEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEEC
Confidence 34444554 3469876531 356666555556667778888877322222222333333378898764211112222333
Q ss_pred -eEEEe-CCEEEE
Q 010770 182 -TATMV-EKRLLI 192 (501)
Q Consensus 182 -~~~~~-~~~lyv 192 (501)
+++.. +++|||
T Consensus 263 ~~~~~~~dg~l~i 275 (275)
T PF13088_consen 263 PSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEETTEEEE
T ss_pred CeeEEeCCCcCCC
Confidence 34444 568886
No 138
>PRK01742 tolB translocation protein TolB; Provisional
Probab=53.40 E-value=2.7e+02 Score=28.67 Aligned_cols=101 Identities=18% Similarity=0.082 Sum_probs=51.3
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCE-EEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 124 (501)
..++++|..++.-..+.... . ........-+++ |++....++. .++|.+|+.++...++.. .+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~---------g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~---~~ 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR---------G-HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTS---GA 291 (429)
T ss_pred cEEEEEeCCCCceEEEecCC---------C-ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeecc---CC
Confidence 46899999887766654221 1 111122233444 4443322221 358999998888777653 11
Q ss_pred CcCCccEEEEEcCcE-EEEEecCCCCcccccEEEEECCCCceEE
Q 010770 125 SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (501)
Q Consensus 125 ~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 167 (501)
......+...|++ |++....++ ...+|.++..+..-..
T Consensus 292 --~~~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 292 --GNNTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASL 330 (429)
T ss_pred --CCcCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEE
Confidence 1122333444554 444433222 2367777776654333
No 139
>PRK10115 protease 2; Provisional
Probab=47.57 E-value=4.4e+02 Score=29.31 Aligned_cols=211 Identities=11% Similarity=0.068 Sum_probs=98.9
Q ss_pred CcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe-CCEEEEEccccCC-CCCCcEEEE
Q 010770 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGS-RRLGDFWVL 107 (501)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~-~~~~~~~~y 107 (501)
+++.+.++--.++....++++.|+.++.... . ..+..+ ...+.. ++.-+++...... ....++|++
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--~--------~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNWYP--E--------LLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCCCC--c--------cccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3455555544444455567777776653211 0 111122 223333 4443333333322 244789999
Q ss_pred ECCCCeE--EEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEEC--CCCceEEcccCCCCCCCCcceeE
Q 010770 108 DTDIWQW--SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT--ISLEWMQLPVTGSVPPPRCGHTA 183 (501)
Q Consensus 108 d~~t~~W--~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~p~~r~~~~~ 183 (501)
++.+..- ..+-. -+............+++..++..... ..+.++.|+. .+..|..+. ..+.. .....
T Consensus 205 ~lgt~~~~d~lv~~---e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~ 275 (686)
T PRK10115 205 TIGTPASQDELVYE---EKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFL---PRRKD-HEYSL 275 (686)
T ss_pred ECCCChhHCeEEEe---eCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEE---ECCCC-CEEEE
Confidence 9988832 33332 11122222223332444333444332 3356788873 344443332 11111 11223
Q ss_pred EEeCCEEEEEcccCCCCCcccccccccccccccCC-CCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCccc
Q 010770 184 TMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-TPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRY 262 (501)
Q Consensus 184 ~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~-t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~ 262 (501)
...++.+|+.-...... ..+...++. +..|+.+-.. .....--.+...++.+++..-..
T Consensus 276 ~~~~~~ly~~tn~~~~~---------~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~-------- 335 (686)
T PRK10115 276 DHYQHRFYLRSNRHGKN---------FGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQR-------- 335 (686)
T ss_pred EeCCCEEEEEEcCCCCC---------ceEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeC--------
Confidence 33467888876543221 112333555 5789888622 11222223444577777765332
Q ss_pred ccccCeEEEEEcCCCceEEcc
Q 010770 263 DIYYNDTIILDRLSAQWKRLP 283 (501)
Q Consensus 263 ~~~~~~v~~yd~~~~~W~~v~ 283 (501)
....++++|..+.....+.
T Consensus 336 --g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 336 --GLTSLRQINRKTREVIGIA 354 (686)
T ss_pred --CEEEEEEEcCCCCceEEec
Confidence 2345888887665555554
No 140
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.94 E-value=3.1e+02 Score=27.49 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=70.1
Q ss_pred EECCcEEEEEcccCCCccCCceEEEEcCCCc--EEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcE
Q 010770 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (501)
Q Consensus 27 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (501)
++.+++||+... + ..++.+|+.+++ |........ .....| ....+++||+- ..++ .+
T Consensus 65 ~~~dg~v~~~~~--~----G~i~A~d~~~g~~~W~~~~~~~~----~~~~~~-----~~~~~G~i~~g-~~~g-----~~ 123 (370)
T COG1520 65 ADGDGTVYVGTR--D----GNIFALNPDTGLVKWSYPLLGAV----AQLSGP-----ILGSDGKIYVG-SWDG-----KL 123 (370)
T ss_pred EeeCCeEEEecC--C----CcEEEEeCCCCcEEecccCcCcc----eeccCc-----eEEeCCeEEEe-cccc-----eE
Confidence 566688988611 1 179999999886 876432100 001111 12226676654 3332 79
Q ss_pred EEEECCCC--eEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCC--ceEEcccCCCCCCCCcc
Q 010770 105 WVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQLPVTGSVPPPRCG 180 (501)
Q Consensus 105 ~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~p~~r~~ 180 (501)
++||..+. .|..-... . ++ ..+.+++.++.+|+.- ..+.++++|..+. .|..-...+ . ..+..
T Consensus 124 y~ld~~~G~~~W~~~~~~---~-~~-~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~ 190 (370)
T COG1520 124 YALDASTGTLVWSRNVGG---S-PY-YASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-L-SLSIY 190 (370)
T ss_pred EEEECCCCcEEEEEecCC---C-eE-EecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-c-ccccc
Confidence 99999544 58776542 1 22 2333445566777653 1345888887754 477544221 1 22222
Q ss_pred eeEEEeCCEEEEE
Q 010770 181 HTATMVEKRLLIY 193 (501)
Q Consensus 181 ~~~~~~~~~lyv~ 193 (501)
...+.-++.+|+-
T Consensus 191 ~~~~~~~~~vy~~ 203 (370)
T COG1520 191 GSPAIASGTVYVG 203 (370)
T ss_pred cCceeecceEEEe
Confidence 2222445666664
No 141
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=45.64 E-value=2.9e+02 Score=26.77 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=89.2
Q ss_pred CCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCce
Q 010770 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (501)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 165 (501)
++.++.-+- ....+-.+|+.+++-.+.+ ++..-.-|..++-.++..++.-+ -..+-++|+++..-
T Consensus 72 dG~VWft~q-----g~gaiGhLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~------~~aI~R~dpkt~ev 136 (353)
T COG4257 72 DGAVWFTAQ-----GTGAIGHLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDT------GLAIGRLDPKTLEV 136 (353)
T ss_pred CCceEEecC-----ccccceecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecC------cceeEEecCcccce
Confidence 455655432 2334667899999988886 66777777777777777777643 12688999999988
Q ss_pred EEcccCCCCCCCCcceeEEEe--CCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEE-
Q 010770 166 MQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS- 242 (501)
Q Consensus 166 ~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~- 242 (501)
++.+.+..++.. +.-..++ .+.|+..|-....+ +| |+.++.-+... .|....-..+|.
T Consensus 137 t~f~lp~~~a~~--nlet~vfD~~G~lWFt~q~G~yG-------rL------dPa~~~i~vfp----aPqG~gpyGi~at 197 (353)
T COG4257 137 TRFPLPLEHADA--NLETAVFDPWGNLWFTGQIGAYG-------RL------DPARNVISVFP----APQGGGPYGICAT 197 (353)
T ss_pred EEeecccccCCC--cccceeeCCCccEEEeeccccce-------ec------CcccCceeeec----cCCCCCCcceEEC
Confidence 888643333222 2222333 46888877544333 34 88877766554 222222233443
Q ss_pred eCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcc
Q 010770 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (501)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (501)
-++.+++..= +-|-+-..|+.+..=..++
T Consensus 198 pdGsvwyasl------------agnaiaridp~~~~aev~p 226 (353)
T COG4257 198 PDGSVWYASL------------AGNAIARIDPFAGHAEVVP 226 (353)
T ss_pred CCCcEEEEec------------cccceEEcccccCCcceec
Confidence 4566666421 1244666777666444444
No 142
>PLN00181 protein SPA1-RELATED; Provisional
Probab=41.42 E-value=5.7e+02 Score=28.87 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=34.0
Q ss_pred CCEEEEEccccCCCCCCcEEEEECCCCeEE-EEecCCCCCCcCCccEEEEE--cCcEEEEEecCCCCcccccEEEEECCC
Q 010770 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (501)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t 162 (501)
++.+++.||.++ .+.+||+.+..-. .+.. . ....++.+ .++.+++.|+.++ .+.+||+.+
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~------~-~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~ 649 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGVSIGTIKT------K-ANICCVQFPSESGRSLAFGSADH-----KVYYYDLRN 649 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCcEEEEEec------C-CCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 456777777543 4778888765422 2211 1 11122222 3467788887553 488899875
Q ss_pred C
Q 010770 163 L 163 (501)
Q Consensus 163 ~ 163 (501)
.
T Consensus 650 ~ 650 (793)
T PLN00181 650 P 650 (793)
T ss_pred C
Confidence 4
No 143
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=41.24 E-value=3.2e+02 Score=25.95 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=76.3
Q ss_pred eEEEEec--CCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeC-CE
Q 010770 113 QWSELTS--FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE-KR 189 (501)
Q Consensus 113 ~W~~~~~--~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~ 189 (501)
.|+...| .+..+.|-...-...-..+.|+..||- ..+|..|+++++.++.- .| ..-+-|+++.-+ +.
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEE-cC---CcceeeeeeecccCc
Confidence 4655544 122344444433333245588888873 34788999999887653 11 122345554432 22
Q ss_pred EEEEcccCCCCCcccccccccccccccCCCCceEEeecCC-C----CCCCceeeEEEEeCCEEEEEcCCCCCCCCccccc
Q 010770 190 LLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG-Q----APSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDI 264 (501)
Q Consensus 190 lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g-~----~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~ 264 (501)
-.+-|+.++. +-.+|..|.+-.++-.+- . .|.....-.+...+....++||...
T Consensus 170 qilsG~EDGt------------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~--------- 228 (325)
T KOG0649|consen 170 QILSGAEDGT------------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK--------- 228 (325)
T ss_pred ceeecCCCcc------------EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc---------
Confidence 3344554432 223355555544332110 1 1211122244445666777777532
Q ss_pred ccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEECCEEEEEc
Q 010770 265 YYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (501)
Q Consensus 265 ~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~iyv~G 308 (501)
+-.+++.+.+=+++-+.+ +| .|-+..+++.+++.|
T Consensus 229 ----lslwhLrsse~t~vfpip----a~-v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 229 ----LSLWHLRSSESTCVFPIP----AR-VHLVDFVDDCVLIGG 263 (325)
T ss_pred ----eeEEeccCCCceEEEecc----cc-eeEeeeecceEEEec
Confidence 445666666555554431 23 234445556665555
No 144
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.30 E-value=4e+02 Score=26.75 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=53.3
Q ss_pred ceEEEEcCC--CcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCC--eEEEEecCCC
Q 010770 47 DVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFGD 122 (501)
Q Consensus 47 ~v~~yd~~t--~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~ 122 (501)
.+++||..+ ..|..-.. .. ++....++..++.+|+.- ..+.++++|..+. .|..-...+
T Consensus 122 ~~y~ld~~~G~~~W~~~~~---------~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~- 184 (370)
T COG1520 122 KLYALDASTGTLVWSRNVG---------GS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP- 184 (370)
T ss_pred eEEEEECCCCcEEEEEecC---------CC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-
Confidence 799999964 47877431 11 344444455566666653 2346888888755 477544311
Q ss_pred CCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCC--ceEE
Q 010770 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQ 167 (501)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~ 167 (501)
. ..+.....+ +.++.+|+-.. . . ...++.+|+.++ .|+.
T Consensus 185 ~-~~~~~~~~~-~~~~~vy~~~~-~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 185 L-SLSIYGSPA-IASGTVYVGSD-G--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred c-ccccccCce-eecceEEEecC-C--C-cceEEEEEccCCcEeeee
Confidence 1 222222222 44556666422 1 1 225889998754 4875
No 145
>PTZ00420 coronin; Provisional
Probab=39.52 E-value=5.3e+02 Score=27.95 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=34.9
Q ss_pred EEEEEccccCCCCCCcEEEEECCCCeEE-EEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 88 HMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 88 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
.+++.||.+ ..+.++|+.+.+=. .+. . .....++....++.+++.++.+ ..+.+||+.+.+
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~i~----~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQIN----M--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEEEe----c--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCc
Confidence 455666643 35778888776421 111 1 1122344444567777777644 348889998764
No 146
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=39.32 E-value=4.5e+02 Score=27.13 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=50.7
Q ss_pred CccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCC
Q 010770 42 KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFG 121 (501)
Q Consensus 42 ~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~ 121 (501)
+...++++++|-.-+.=-.++-. .|..|. +++-.+++.+|++-= ...+-+++.|...-+=-++- |
T Consensus 402 de~~N~vYilDe~lnvvGkltGl--------~~gERI-YAvRf~gdv~yiVTf----rqtDPlfviDlsNPenPkvl--G 466 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGL--------APGERI-YAVRFVGDVLYIVTF----RQTDPLFVIDLSNPENPKVL--G 466 (603)
T ss_pred CCccceeEEEcCCCcEEEEEecc--------CCCceE-EEEEEeCceEEEEEE----eccCceEEEEcCCCCCCcee--E
Confidence 56789999999887766665522 355565 445566777777642 22445778877654321111 1
Q ss_pred CCCCcCCccEEEEEcCcEEEEEecCCC
Q 010770 122 DLPSPRDFAAASAIGNRKIVMYGGWDG 148 (501)
Q Consensus 122 ~~p~~r~~~~~~~~~~~~iyv~GG~~~ 148 (501)
.+..|-+.--..-++++.+.=+|-.++
T Consensus 467 eLKIPGfS~YLHpigen~~lGvG~~~g 493 (603)
T COG4880 467 ELKIPGFSEYLHPIGENRLLGVGAYQG 493 (603)
T ss_pred EEecCCchhhccccCCCcEEEeecccC
Confidence 222222222233356666666665543
No 147
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=38.99 E-value=3.4e+02 Score=25.64 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=57.5
Q ss_pred CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC--EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCC
Q 010770 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC--HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (501)
Q Consensus 46 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 123 (501)
..+.++|.+|++=-+-- -.--..-.++..++ .|.+-|+++ ..+-++|..++..+++.. +
T Consensus 81 k~v~vwDV~TGkv~Rr~-----------rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQi---l 141 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-----------RGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQI---L 141 (307)
T ss_pred ceEEEEEcccCeeeeec-----------ccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccch---h
Confidence 45888999887643310 00001112344443 466666643 467888998888877764 6
Q ss_pred CCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 124 PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 124 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
...+..-..+.+.+ +.++.|..++. +..||+..++
T Consensus 142 dea~D~V~Si~v~~-heIvaGS~DGt-----vRtydiR~G~ 176 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE-HEIVAGSVDGT-----VRTYDIRKGT 176 (307)
T ss_pred hhhcCceeEEEecc-cEEEeeccCCc-----EEEEEeecce
Confidence 66777777777755 66666665543 6778876654
No 148
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=38.77 E-value=4.3e+02 Score=26.66 Aligned_cols=89 Identities=12% Similarity=0.017 Sum_probs=49.7
Q ss_pred CCCCCcCcEEEEECCcEEEEEcccC----CCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcce-----eE-EEEe
Q 010770 16 VPQPRSGHSAVNIGKSKVVVFGGLV----DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAF-----HI-AVAI 85 (501)
Q Consensus 16 ~P~~R~~h~~~~~~~~~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~-----h~-~~~~ 85 (501)
.|..+..|.+..-++..+|+.-.+. .+...+.+.+||+.+.+=..--.. ++.||.. +. +..-
T Consensus 43 i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~--------p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 43 TDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL--------PEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred EEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc--------CCCchhhccCccceEEECC
Confidence 4444444544333445788888743 234567799999998875542211 2333411 12 2222
Q ss_pred -CCEEEEEccccCCCCCCcEEEEECCCCeEEE
Q 010770 86 -DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSE 116 (501)
Q Consensus 86 -~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 116 (501)
+..+||.- ...-+.+-+.|..+++-..
T Consensus 115 dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 115 DNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 34678762 1234667888888776544
No 149
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=38.61 E-value=4.6e+02 Score=27.02 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=22.4
Q ss_pred cCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 126 PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
....+++++..||.||..|-.++ -+-+||+++..
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~-----~vkiwdlks~~ 380 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDG-----VVKIWDLKSQT 380 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCc-----eEEEEEcCCcc
Confidence 34556677777877777765433 36778887765
No 150
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=36.47 E-value=5.7e+02 Score=27.45 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=34.2
Q ss_pred cCCccEEEEEc-CcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEeC--CEEEEEcccCC
Q 010770 126 PRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE--KRLLIYGGRGG 198 (501)
Q Consensus 126 ~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~~ 198 (501)
|+.+..++... +..||+.|- -+++|++|+..+.|-..- ..--.+--++.++ +.|+.+||..+
T Consensus 133 P~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred CcCCccccccCCCccEEEeec------CcceEEEEcccccccccc-----ccccccceeeeecCccceEEecccCc
Confidence 44444444431 235666543 467999999999987532 1111222233333 57888888643
No 151
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=35.33 E-value=2.3e+02 Score=28.79 Aligned_cols=111 Identities=14% Similarity=-0.008 Sum_probs=55.4
Q ss_pred CcEEEEECCcEEEEEcccCCCccC-CceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCE-EEEEccccCCC
Q 010770 22 GHSAVNIGKSKVVVFGGLVDKRFL-SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFGGRFGSR 99 (501)
Q Consensus 22 ~h~~~~~~~~~iyv~GG~~~~~~~-~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~-iyv~GG~~~~~ 99 (501)
||--..-.+..++.|+-.++-... ..||..|.......++.. ..+....+|---+.++. |+..+. ....
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--------~~~~e~~gHEfw~~DG~~i~y~~~-~~~~ 261 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--------RMEGESVGHEFWVPDGSTIWYDSY-TPGG 261 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----------TTEEEEEEEE-TTSS-EEEEEE-ETTT
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--------CCCCcccccccccCCCCEEEEEee-cCCC
Confidence 455555444667777655554444 489999988776666642 23455566666666654 443333 2222
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCC
Q 010770 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD 147 (501)
Q Consensus 100 ~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~ 147 (501)
.-.-+..||+.+..=+.+.. +| ...|-++.. ++++++--|.+
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~---~p--~~~H~~ss~-Dg~L~vGDG~d 303 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLME---MP--WCSHFMSSP-DGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEE-TTT--EEEEEE---E---SEEEEEE-T-TSSEEEEEE--
T ss_pred CceEEEeeCCCCCCceEEEe---CC--ceeeeEEcC-CCCEEEecCCC
Confidence 22347778998875444432 43 355666655 56888877754
No 152
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=35.26 E-value=4.7e+02 Score=26.11 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=13.2
Q ss_pred cEEEEEcccCCCccCCceEEEEcC
Q 010770 31 SKVVVFGGLVDKRFLSDVVVYDID 54 (501)
Q Consensus 31 ~~iyv~GG~~~~~~~~~v~~yd~~ 54 (501)
.+.+++||+..+. +.++.+|..
T Consensus 95 wktilvggmg~GG--~~~yALDVT 116 (335)
T PF05567_consen 95 WKTILVGGMGRGG--RGYYALDVT 116 (335)
T ss_dssp EEEEEEEE-TTS---SEEEEEE-S
T ss_pred ceEEEEeCCCCCc--ceEEEEecc
Confidence 4789999987554 246666665
No 153
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=35.24 E-value=5.5 Score=29.11 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCcccccccchhhHHHHHHHHHHHhcccccCCCCCCceeEEEEEecCCccccccchhHHHHHHh
Q 010770 433 PRSIPIKELGPLLRDYQRLIARHLANLQSTELGLPGKEAYTFYHLKNSSQLHMVDIPKLLEEYK 496 (501)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (501)
...+.=.|-.||-+=+|-||+|-...-+ .+ |.-++-.-..-.-...|||||..+|.++.
T Consensus 21 a~pVse~erd~LAhYFQlLitRLmnnee--Is---EeaQ~EMA~eAgi~~~rID~IA~fLNqWG 79 (81)
T PF10820_consen 21 AKPVSEAERDALAHYFQLLITRLMNNEE--IS---EEAQQEMASEAGIDEQRIDDIANFLNQWG 79 (81)
T ss_pred ccCcchhhhhHHHHHHHHHHHHHhccHh--hh---HHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 3344445778899999999998763222 00 11111111122234569999999998864
No 154
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=34.90 E-value=7.1e+02 Score=28.10 Aligned_cols=153 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEECCcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcce------------------------
Q 010770 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAF------------------------ 79 (501)
Q Consensus 26 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~------------------------ 79 (501)
++++ +.||+... .+.++.+|..|+ .|+. ....+...
T Consensus 191 lvvg-g~lYv~t~------~~~V~ALDa~TGk~lW~~-----------d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~ 252 (764)
T TIGR03074 191 LKVG-DTLYLCTP------HNKVIALDAATGKEKWKF-----------DPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAA 252 (764)
T ss_pred EEEC-CEEEEECC------CCeEEEEECCCCcEEEEE-----------cCCCCcccccccccccceEEecCCcccccccc
Q ss_pred -eEEEEeCCEEEEEccccCCCCCCcEEEEECCCCeEE----------EEecCCCCCCcCCccEEEEEcCcEEEEEecCCC
Q 010770 80 -HIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWS----------ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG 148 (501)
Q Consensus 80 -h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~----------~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~ 148 (501)
.+.+..+++||+- ..-..++.+|.+|++=. .-...++.+......++.-+--+.+.|+|+...
T Consensus 253 ~~~p~~~~~rV~~~------T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~ 326 (764)
T TIGR03074 253 PAAPADCARRIILP------TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVA 326 (764)
T ss_pred cccccccCCEEEEe------cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEeccc
Q ss_pred C-----cccccEEEEECCCCc--eEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC
Q 010770 149 K-----KWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP 220 (501)
Q Consensus 149 ~-----~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~ 220 (501)
+ .....+..||..|.+ |+.-........+.. .+..|..||-+. -....||++++
T Consensus 327 d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~-------~g~~~~~gg~n~-----------W~~~s~D~~~g 387 (764)
T TIGR03074 327 DNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPA-------PGETYTRNTPNS-----------WSVASYDEKLG 387 (764)
T ss_pred ccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCC-------CCCEeccCCCCc-----------cCceEEcCCCC
No 155
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=34.63 E-value=52 Score=19.72 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=14.6
Q ss_pred CcCcEEEEECCcEEEEEcc
Q 010770 20 RSGHSAVNIGKSKVVVFGG 38 (501)
Q Consensus 20 R~~h~~~~~~~~~iyv~GG 38 (501)
-..|++++..++.||.+|-
T Consensus 7 G~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 7 GGYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp ESSEEEEEE-TTEEEEEE-
T ss_pred cCCEEEEEEcCCCEEEEcC
Confidence 3569999988899999985
No 156
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=34.04 E-value=8.5e+02 Score=28.73 Aligned_cols=217 Identities=12% Similarity=-0.018 Sum_probs=0.0
Q ss_pred cEEEEE-CCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCC------CcceeEEEEe--CCEEEEEc
Q 010770 23 HSAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG------PRAFHIAVAI--DCHMFIFG 93 (501)
Q Consensus 23 h~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~------~R~~h~~~~~--~~~iyv~G 93 (501)
+.+++. .++.|||.-..+ +.+.++|+.++.=+.+...+.......... -..-+..++. ++.|||..
T Consensus 627 ~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Q ss_pred cccCCCCCCcEEEEECCCCeEEEEecCCCCC----------CcCCccEEEEEcCcE-EEEEecCCCCcccccEEEEECCC
Q 010770 94 GRFGSRRLGDFWVLDTDIWQWSELTSFGDLP----------SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTIS 162 (501)
Q Consensus 94 G~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p----------~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~t 162 (501)
...+.+++||+.++....+...+... ....-..+++..++. |||....+.. +.+||+.+
T Consensus 702 -----~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-----Irv~D~~t 771 (1057)
T PLN02919 702 -----AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-----IRALDLKT 771 (1057)
T ss_pred -----CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-----EEEEECCC
Q ss_pred CceEEcc---------------cCCCCCCCCcceeEEEe---CCEEEEEcccCCCCCcccccccccccccccCCCCceEE
Q 010770 163 LEWMQLP---------------VTGSVPPPRCGHTATMV---EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ 224 (501)
Q Consensus 163 ~~W~~~~---------------~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~ 224 (501)
+....+. ..+........+...+. ++.+||.-..+ +.+.+||+.+.....
T Consensus 772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------------~rIrviD~~tg~v~t 839 (1057)
T PLN02919 772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------------HKIKKLDPATKRVTT 839 (1057)
T ss_pred CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------------CEEEEEECCCCeEEE
Q ss_pred eecCCCCCCC----------ceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCc
Q 010770 225 LKLPGQAPSS----------RCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (501)
Q Consensus 225 ~~~~g~~p~~----------r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (501)
+...|..-.. +-..-++.-++++||....+ +.|.++|+.+..
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------------n~Irvid~~~~~ 891 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------------SLIRYLDLNKGE 891 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------------CEEEEEECCCCc
No 157
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.89 E-value=5.7e+02 Score=26.39 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=32.9
Q ss_pred EEEEECCCCe-EEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEccc
Q 010770 104 FWVLDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV 170 (501)
Q Consensus 104 ~~~yd~~t~~-W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 170 (501)
+.++|....+ ...+. ++....-.+......|...+++|. .-.+|.|+-.+.+|+++..
T Consensus 413 V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeeeh
Confidence 7888886544 22222 222221222333344577777753 2236777888999999973
No 158
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.04 E-value=4.7e+02 Score=25.18 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred EEEECCcEEEEEcccCCCccCCceEEEEcCCC--cEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCC
Q 010770 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (501)
Q Consensus 25 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~ 102 (501)
.++.++.+-||+-|-. ...+...|+.++ .|+.+ -..|...+++++++. .|+|-+++
T Consensus 16 LVV~~dskT~v~igSH----s~~~~avd~~sG~~~We~i------------lg~RiE~sa~vvgdf-VV~GCy~g----- 73 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSH----SGIVIAVDPQSGNLIWEAI------------LGVRIECSAIVVGDF-VVLGCYSG----- 73 (354)
T ss_pred EEEecCCceEEEEecC----CceEEEecCCCCcEEeehh------------hCceeeeeeEEECCE-EEEEEccC-----
Confidence 4455555555555532 245677888876 68775 356788888888887 56665543
Q ss_pred cEEEEECCCC--eEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc
Q 010770 103 DFWVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (501)
Q Consensus 103 ~~~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 164 (501)
.+|..+..|+ -|.-... ......+.+....+.|| .|-.++ .+|..|+.+..
T Consensus 74 ~lYfl~~~tGs~~w~f~~~-----~~vk~~a~~d~~~glIy-cgshd~-----~~yalD~~~~~ 126 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVIL-----ETVKVRAQCDFDGGLIY-CGSHDG-----NFYALDPKTYG 126 (354)
T ss_pred cEEEEEecchhheeeeeeh-----hhhccceEEcCCCceEE-EecCCC-----cEEEecccccc
Confidence 4677777766 3655432 11111222333333444 454443 37788887765
No 159
>PTZ00421 coronin; Provisional
Probab=31.34 E-value=6.6e+02 Score=26.63 Aligned_cols=108 Identities=9% Similarity=0.053 Sum_probs=50.5
Q ss_pred EEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEECCC
Q 010770 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI 111 (501)
Q Consensus 32 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 111 (501)
.+++.||.++ .+.++|+.+++-...- . .........+..-++.+++.|+.+ ..+.+||+.+
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg~~~~~l-~--------~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rs 199 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERGKAVEVI-K--------CHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRD 199 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCCeEEEEE-c--------CCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCC
Confidence 4666666533 4778888876432211 0 001111122222356777777654 3578899987
Q ss_pred CeEE-EEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCC
Q 010770 112 WQWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (501)
Q Consensus 112 ~~W~-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 163 (501)
++-. .+. .........++...++..++..|.+.. .-..+..||+.+.
T Consensus 200 g~~v~tl~----~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~ 247 (493)
T PTZ00421 200 GTIVSSVE----AHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKM 247 (493)
T ss_pred CcEEEEEe----cCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCC
Confidence 6532 121 111111112222333334444454321 1245788887654
No 160
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=30.83 E-value=6.7e+02 Score=26.58 Aligned_cols=136 Identities=19% Similarity=0.184 Sum_probs=64.5
Q ss_pred cCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcceeEEEe--CCEEEEEcccCCCCCcccccccccccc
Q 010770 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLI 213 (501)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~ 213 (501)
.++...++||-++. +++|.+....-.... -.-..|..-+.+.+ ++..++.|... ..+.
T Consensus 453 ~~~~~vaVGG~Dgk-----vhvysl~g~~l~ee~---~~~~h~a~iT~vaySpd~~yla~~Da~------------rkvv 512 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGK-----VHVYSLSGDELKEEA---KLLEHRAAITDVAYSPDGAYLAAGDAS------------RKVV 512 (603)
T ss_pred CCCCEEEEecccce-----EEEEEecCCccccee---eeecccCCceEEEECCCCcEEEEeccC------------CcEE
Confidence 44566777776543 777777654432221 12222333344444 45555555432 2334
Q ss_pred cccCC-----CCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCC
Q 010770 214 EEENE-----TPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEP 288 (501)
Q Consensus 214 ~Yd~~-----t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~ 288 (501)
.||.. ++.|.... +|...-+=.-+++++..|+.+ ..|++|+++.-.=. +...+.-
T Consensus 513 ~yd~~s~~~~~~~w~FHt-------akI~~~aWsP~n~~vATGSlD------------t~Viiysv~kP~~~-i~iknAH 572 (603)
T KOG0318|consen 513 LYDVASREVKTNRWAFHT-------AKINCVAWSPNNKLVATGSLD------------TNVIIYSVKKPAKH-IIIKNAH 572 (603)
T ss_pred EEEcccCceecceeeeee-------eeEEEEEeCCCceEEEecccc------------ceEEEEEccChhhh-eEecccc
Confidence 45544 44444222 122111112456777777654 45788886543211 2221111
Q ss_pred CCcccceEEEEECCEEEEEccCCCC
Q 010770 289 PPARAYHSMTCLGSLYLLFGGFDGK 313 (501)
Q Consensus 289 p~~r~~~~~~~~~~~iyv~GG~~~~ 313 (501)
+....+...+++.-+|--|.+.+
T Consensus 573 --~~gVn~v~wlde~tvvSsG~Da~ 595 (603)
T KOG0318|consen 573 --LGGVNSVAWLDESTVVSSGQDAN 595 (603)
T ss_pred --ccCceeEEEecCceEEeccCcce
Confidence 11133444556666676665543
No 161
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=29.81 E-value=3.7e+02 Score=26.87 Aligned_cols=242 Identities=12% Similarity=0.015 Sum_probs=0.0
Q ss_pred CCCCCCCcCcEEEEECCcEEEEEcccCC----CccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEE
Q 010770 14 GTVPQPRSGHSAVNIGKSKVVVFGGLVD----KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHM 89 (501)
Q Consensus 14 g~~P~~R~~h~~~~~~~~~iyv~GG~~~----~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~i 89 (501)
|..+..-.++.+..-++..+|+..-+-. +.+..-+.+||..|-.-..=-..+.++.-...+ .+...+....+..+
T Consensus 31 Gmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~-~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 31 GMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP-YKNMFALSADGKFL 109 (342)
T ss_dssp EEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS---GGGEEE-TTSSEE
T ss_pred EEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc-cccceEEccCCcEE
Q ss_pred EEEccccCCCCCCcEEEEECCCCeEEEEecCCC----CCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCce
Q 010770 90 FIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD----LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (501)
Q Consensus 90 yv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~----~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W 165 (501)
||+-= .+..+|-+-|+..++....-+.++ .|.+-..+++..-....+.+-=+.+++.....-..|++...-.
T Consensus 110 ~V~N~----TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 110 YVQNF----TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPL 185 (342)
T ss_dssp EEEEE----SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B
T ss_pred EEEcc----CCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccc
Q ss_pred EEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCC
Q 010770 166 MQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH 245 (501)
Q Consensus 166 ~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~ 245 (501)
-.-+ .....-...-.+..+|.+|-+-=......+......+...+. ...|. |-..--.+.....+
T Consensus 186 f~~~---~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~----~~~Wr--------PGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 186 FEHP---AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK----ADGWR--------PGGWQLIAYHAASG 250 (342)
T ss_dssp -S-----EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH----HTTEE--------E-SSS-EEEETTTT
T ss_pred cccc---ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc----ccCcC--------CcceeeeeeccccC
Q ss_pred EEEEEcCCCCCCCCcccccccCeEEEEEcCCCc
Q 010770 246 YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (501)
Q Consensus 246 ~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (501)
+||+.-=....+..+. ....||+||+.+.+
T Consensus 251 rlyvLMh~g~~gsHKd---pgteVWv~D~~t~k 280 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKD---PGTEVWVYDLKTHK 280 (342)
T ss_dssp EEEEEEEE--TT-TTS----EEEEEEEETTTTE
T ss_pred eEEEEecCCCCCCccC---CceEEEEEECCCCe
No 162
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=29.18 E-value=4.9e+02 Score=24.48 Aligned_cols=228 Identities=16% Similarity=0.208 Sum_probs=104.7
Q ss_pred CCcEEeceecCCCCCCCCCCCCcceeEEEEe--CCEEEEEccc--cCCC-C-CCcEEEEECC-CCeEEEEecCC---CCC
Q 010770 55 NKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGR--FGSR-R-LGDFWVLDTD-IWQWSELTSFG---DLP 124 (501)
Q Consensus 55 t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~--~~~~-~-~~~~~~yd~~-t~~W~~~~~~~---~~p 124 (501)
-.+|+........ ..+..+....+.+. +++|++|-.. .... . ..-.+....+ -.+|+...... ...
T Consensus 29 G~tWs~~~~v~~~----~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~ 104 (275)
T PF13088_consen 29 GKTWSEPRIVADG----PKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGN 104 (275)
T ss_dssp TTEEEEEEEEETS----TBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCS
T ss_pred CCeeCCCEEEeec----cccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccc
Confidence 3579997654321 11223344444443 7788888522 2211 1 1112355555 45798875311 111
Q ss_pred CcCCccE-EEEEcCcEEEEEecCCCCcccccEEEEECC-CCceEEcccCCCCCCC-CcceeEEE-e-CCEEEEEcccCCC
Q 010770 125 SPRDFAA-ASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVPPP-RCGHTATM-V-EKRLLIYGGRGGG 199 (501)
Q Consensus 125 ~~r~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~p~~-r~~~~~~~-~-~~~lyv~GG~~~~ 199 (501)
....... .+.+.++.+++..-............|..+ -.+|+... ..+.. .....+.+ . +++|+++--.. .
T Consensus 105 ~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~---~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~ 180 (275)
T PF13088_consen 105 FSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGS---PIPDGQGECEPSIVELPDGRLLAVFRTE-G 180 (275)
T ss_dssp CEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEE---ECECSEEEEEEEEEEETTSEEEEEEEEC-S
T ss_pred eeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccc---cccccCCcceeEEEECCCCcEEEEEEcc-C
Confidence 1111222 244567788776211111123334445555 45599886 33222 33333333 2 67888876442 1
Q ss_pred CCcccccccccccccc-cCCCCceEEeecCCCCCCCceeeEEEE-eCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCC
Q 010770 200 GPIMGDLWALKGLIEE-ENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (501)
Q Consensus 200 ~~~~~d~~~l~~~~~Y-d~~t~~W~~~~~~g~~p~~r~~~s~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (501)
.. .. ...+ .-...+|+..... ..|.......++. .++.++++...... ...-.+++-.-...
T Consensus 181 ~~---~~-----~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------r~~l~l~~S~D~g~ 244 (275)
T PF13088_consen 181 ND---DI-----YISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDG-------RSNLSLYVSEDGGK 244 (275)
T ss_dssp ST---EE-----EEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSST-------SEEEEEEEECTTCE
T ss_pred CC---cE-----EEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCC-------CCceEEEEEeCCCC
Confidence 11 11 1111 2346689976522 3455555544444 45677777763211 11223333334478
Q ss_pred ceEEcccCCCCCCcccceE-EEEE-CCEEEE
Q 010770 278 QWKRLPIGNEPPPARAYHS-MTCL-GSLYLL 306 (501)
Q Consensus 278 ~W~~v~~~~~~p~~r~~~~-~~~~-~~~iyv 306 (501)
+|.........+...+++. ++.. +++|+|
T Consensus 245 tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 245 TWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 8987655433222234443 4444 568886
No 163
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=28.49 E-value=6.9e+02 Score=25.95 Aligned_cols=213 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred cEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe---CCEEEEEccccCCC
Q 010770 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSR 99 (501)
Q Consensus 23 h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~ 99 (501)
|+.+..+.+..++.|+..++ +|++...++.--.+ -.+-+....+.. ++..++.||.++.
T Consensus 85 ~al~s~n~G~~l~ag~i~g~-----lYlWelssG~LL~v------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~- 146 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGN-----LYLWELSSGILLNV------------LSAHYQSITCLKFSDDGSHIITGSKDGA- 146 (476)
T ss_pred eeeecCCCceEEEeecccCc-----EEEEEeccccHHHH------------HHhhccceeEEEEeCCCcEEEecCCCcc-
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCC----cccccEEEEECCCCceEEcccCCCCC
Q 010770 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVLDTISLEWMQLPVTGSVP 175 (501)
Q Consensus 100 ~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~W~~~~~~~~~p 175 (501)
|.+|.+.+--=..-.-...+-..-..|+..+. | .-.=+||.++. ..-..+-+||+..+ .-+. ...
T Consensus 147 ----V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT-D-l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LLl---ti~ 215 (476)
T KOG0646|consen 147 ----VLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT-D-LQIGSGGTNARLYTASEDRTIKLWDLSLG--VLLL---TIT 215 (476)
T ss_pred ----EEEEEEEeecccccCCCccceeeeccCcceeE-E-EEecCCCccceEEEecCCceEEEEEeccc--eeeE---EEe
Q ss_pred CCCcceeEEEeCCEEEEEcccCCCCCccccccccc--cc----ccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEE
Q 010770 176 PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK--GL----IEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLL 249 (501)
Q Consensus 176 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~--~~----~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v 249 (501)
.|+.-+++++....-.+|=|.....-+...++.+. .. ..|+....+...+. |..-..-...=++..++.+++
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAISTDGTLLL 293 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEecCccEEE
Q ss_pred EcCCCCCCCCcccccccCeEEEEEcCCCc
Q 010770 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (501)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (501)
.|+.+ +.+.++|+.+.+
T Consensus 294 SGd~d------------g~VcvWdi~S~Q 310 (476)
T KOG0646|consen 294 SGDED------------GKVCVWDIYSKQ 310 (476)
T ss_pred eeCCC------------CCEEEEecchHH
No 164
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.20 E-value=1.3e+02 Score=19.04 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=15.5
Q ss_pred EEEEeCCEEEEEccccCCCCCCcEEEEECCC
Q 010770 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI 111 (501)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 111 (501)
+.++.++.||+.+. ...++++|+++
T Consensus 16 ~~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC------CCEEEEEeCCC
Confidence 34667888888754 34688888764
No 165
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=28.15 E-value=6.9e+02 Score=25.88 Aligned_cols=107 Identities=15% Similarity=0.021 Sum_probs=59.4
Q ss_pred cCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCC-EEEEEccccCCCCCCcEEEEECCCCeEEEEecCCC
Q 010770 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (501)
Q Consensus 44 ~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 122 (501)
-..++|++|..++.-..+... .....+-...-++ +|+..-.+ .-...++++|++..+=+++...+.
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~----------~gi~~~Ps~spdG~~ivf~Sdr---~G~p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNG----------FGINTSPSWSPDGSKIVFTSDR---GGRPQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred CCccEEEEcCCCCcceecccC----------CccccCccCCCCCCEEEEEeCC---CCCcceEEECCCCCceeEeeccCC
Confidence 356899999998874444321 1222233333344 44444222 223389999999988888765221
Q ss_pred CCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCc-eEEccc
Q 010770 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE-WMQLPV 170 (501)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~ 170 (501)
....-..-.|++.++|-+..... .++..+|+.++. |+.+..
T Consensus 327 -----~~~~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 327 -----GNSNPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred -----CCcCccCCCCCCEEEEEeccCCc--eeeEEeccCCCCcEEEccc
Confidence 11122222344555554433222 568888888777 888763
No 166
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.63 E-value=5.1e+02 Score=24.14 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCC-CCCcceeEEEeCCEEEEEcccCCCCC
Q 010770 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGP 201 (501)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~ 201 (501)
....+.+-+...+.+++||.--|..+. +.+.++|..+.+=..-. +++ ...++-..+..++.+|..
T Consensus 41 phDs~sfTQGL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~---~l~~~~~FgEGit~~gd~~y~L-------- 106 (262)
T COG3823 41 PHDSTSFTQGLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSE---KLAPDTVFGEGITKLGDYFYQL-------- 106 (262)
T ss_pred cCchhhhhcceeeeCCEEEEecccccc---ceeEEEeccCceEEEEe---ecCCccccccceeeccceEEEE--------
Q ss_pred cccccccccccccccCCCCceEEeecCCCCCCCceeeEEEEeCCEEEEEcCCCC--------------------------
Q 010770 202 IMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT-------------------------- 255 (501)
Q Consensus 202 ~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~~i~v~GG~~~-------------------------- 255 (501)
..++-..|-.+.++.+.+. ..+....+.+.+..+..+++--|...
T Consensus 107 ------Tw~egvaf~~d~~t~~~lg---~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~ 177 (262)
T COG3823 107 ------TWKEGVAFKYDADTLEELG---RFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSK 177 (262)
T ss_pred ------EeccceeEEEChHHhhhhc---ccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeeccc
Q ss_pred -------CCCCcccccccCeEEEEEcCCCc---eEEcccCCCCCCcccceEEEEEC-------CEEEEEc
Q 010770 256 -------GGWLSRYDIYYNDTIILDRLSAQ---WKRLPIGNEPPPARAYHSMTCLG-------SLYLLFG 308 (501)
Q Consensus 256 -------~~~~~~~~~~~~~v~~yd~~~~~---W~~v~~~~~~p~~r~~~~~~~~~-------~~iyv~G 308 (501)
++..-..-=..+.+-+.||++.+ |..++.......++..+.-+..| +++|+.|
T Consensus 178 LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 178 LNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=27.09 E-value=8.5e+02 Score=26.59 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=84.0
Q ss_pred CCEEEEEccccCCCCCCcEEEEECCCCeEEEEecCCCCCCcCCccEEEEE--cCcEEEEEecCCCCcccccEEEEECCCC
Q 010770 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (501)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 163 (501)
++++..+|-... -.++.+.++.+ ..+....++|..+...+...+ .++++++.. ....+++.++..+.
T Consensus 393 dg~~Ia~st~~~----~~iy~L~~~~~--vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~p 461 (691)
T KOG2048|consen 393 DGNLIAISTVSR----TKIYRLQPDPN--VKVINVDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELETP 461 (691)
T ss_pred CCCEEEEeeccc----eEEEEeccCcc--eeEEEeccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEecCc
Confidence 455555543211 12444444442 222333468888766666553 455777765 23456888888887
Q ss_pred ceEEcccCCCCCCCCcce----eEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCCceeeE
Q 010770 164 EWMQLPVTGSVPPPRCGH----TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHT 239 (501)
Q Consensus 164 ~W~~~~~~~~~p~~r~~~----~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s 239 (501)
+-.++.. -.+.+.+.. ....+++.|.++++. ..+++|++++.+-..+.. .++ +..-+
T Consensus 462 s~kel~~--~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~~--rln--~~vTa 522 (691)
T KOG2048|consen 462 SFKELKS--IQSQAKCPSISRLVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLKV--RLN--IDVTA 522 (691)
T ss_pred chhhhhc--cccccCCCcceeEEEcCCCCEEEEEecc-------------ceEEEEEcccceeecchh--ccC--cceee
Confidence 7777652 122222221 112236788888854 446688888887665541 111 22222
Q ss_pred EEE---eCCEEEEEcCCCCCCCCcccccccCeEEEEEcCC---CceEEccc
Q 010770 240 ITS---GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLS---AQWKRLPI 284 (501)
Q Consensus 240 ~~~---~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~---~~W~~v~~ 284 (501)
+.. ..+.+++.- ..|.++.||+.. ..|.+...
T Consensus 523 ~~~~~~~~~~lvvat-------------s~nQv~efdi~~~~l~~ws~~nt 560 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVAT-------------SNNQVFEFDIEARNLTRWSKNNT 560 (691)
T ss_pred eeccccccCcEEEEe-------------cCCeEEEEecchhhhhhhhhccc
Confidence 222 345666633 236789999843 45665544
No 168
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=26.48 E-value=4.3e+02 Score=22.94 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=47.0
Q ss_pred EEeCCEEEEEccccCCCCCCcEEEEECCCCeE-EEEecCCCCCCcCC----ccEEEEEcCcEEEEEecCCCCcccccEEE
Q 010770 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQW-SELTSFGDLPSPRD----FAAASAIGNRKIVMYGGWDGKKWLSDVYV 157 (501)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~p~~r~----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 157 (501)
+.++|.+|=++.........-+..||..+.+. ..++ +|.... .....++.+++|-++--. .....-++|+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~----lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP----LPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC----CCCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEE
Confidence 56778887666544433222689999999999 5554 443333 122223334466666321 1222356777
Q ss_pred EE---CCCCceEEcc
Q 010770 158 LD---TISLEWMQLP 169 (501)
Q Consensus 158 yd---~~t~~W~~~~ 169 (501)
.+ ....+|+++-
T Consensus 77 m~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 77 MKKYGYGKESWTKLF 91 (164)
T ss_pred EeeeccCcceEEEEE
Confidence 66 2377899875
No 169
>PRK01029 tolB translocation protein TolB; Provisional
Probab=24.56 E-value=7.9e+02 Score=25.34 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=34.7
Q ss_pred cccccccCCCCceEEeecCCCCCCCceeeEEEEeCC-EEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEccc
Q 010770 210 KGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (501)
Q Consensus 210 ~~~~~Yd~~t~~W~~~~~~g~~p~~r~~~s~~~~~~-~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (501)
..+++||+.+++.+.+... +..-...+ ..-++ .|++.... . -...+|.+|+.+.....+..
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~---~~~~~~p~-wSpDG~~L~f~~~~-~---------g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS---PENKESPS-WAIDSLHLVYSAGN-S---------NESELYLISLITKKTRKIVI 412 (428)
T ss_pred cEEEEEECCCCCeEEccCC---CCCccceE-ECCCCCEEEEEECC-C---------CCceEEEEECCCCCEEEeec
Confidence 3466779999988877621 11111111 12234 44444322 1 12579999999888877754
No 170
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.63 E-value=8e+02 Score=24.71 Aligned_cols=120 Identities=13% Similarity=0.046 Sum_probs=66.0
Q ss_pred cEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccC----CCCCCcEEE
Q 010770 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG----SRRLGDFWV 106 (501)
Q Consensus 31 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~----~~~~~~~~~ 106 (501)
..+||.-.....- .+.+.++|..+.+-...-.. +..||. ...-.+..||+.-.+-. +...+.+.+
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~--------G~~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v 81 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDG--------GFLPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEV 81 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEEEEEEEc--------cCCCce--eECCCCCEEEEEeccccccccCCCCCEEEE
Confidence 3466654432111 27899999988654332211 223332 22223568999876422 344677999
Q ss_pred EECCCCeEEEEecCCCCCCcC-----CccEEEEEcCc-EEEEEecCCCCcccccEEEEECCCCceEE
Q 010770 107 LDTDIWQWSELTSFGDLPSPR-----DFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (501)
Q Consensus 107 yd~~t~~W~~~~~~~~~p~~r-----~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 167 (501)
||+.+.+-..--+. .+.|| .-+..+...|+ .+|+. -. ...+.+-++|+.+++-..
T Consensus 82 ~D~~t~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~---~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 82 IDPQTHLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFY-QF---SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EECccCcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEe-cC---CCCCEEEEEECCCCcEEE
Confidence 99999876533221 23333 22334444454 56665 22 224568888888877654
No 171
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.37 E-value=6.9e+02 Score=23.89 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=37.0
Q ss_pred CCCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCceEEcccCCCCCCcccceEEEEE-CCEEEEEc
Q 010770 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (501)
Q Consensus 230 ~~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~iyv~G 308 (501)
.+|......+.. -+..+||.||... .++.||..++.=......+. +--.|+.-.. ++.+|..|
T Consensus 222 k~P~nV~SASL~-P~k~~fVaGged~------------~~~kfDy~TgeEi~~~nkgh---~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 222 KMPCNVESASLH-PKKEFFVAGGEDF------------KVYKFDYNTGEEIGSYNKGH---FGPVHCVRFSPDGELYASG 285 (334)
T ss_pred cCcccccccccc-CCCceEEecCcce------------EEEEEeccCCceeeecccCC---CCceEEEEECCCCceeecc
Confidence 345444433332 2347999998642 46788877765322221211 1122443333 78999998
Q ss_pred cCCCC
Q 010770 309 GFDGK 313 (501)
Q Consensus 309 G~~~~ 313 (501)
-.+|.
T Consensus 286 SEDGT 290 (334)
T KOG0278|consen 286 SEDGT 290 (334)
T ss_pred CCCce
Confidence 77664
No 172
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=21.70 E-value=9.1e+02 Score=25.01 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=56.6
Q ss_pred cccEEEEECCCCceEEcccCCCCCCCCcceeEEEeC-CEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCC
Q 010770 152 LSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQ 230 (501)
Q Consensus 152 ~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~ 230 (501)
..++|.+|..+.+=.++. .. .....+....-+ .+|+..-...+. ..+++||++...=+++...+.
T Consensus 261 ~~~iy~~dl~~~~~~~Lt---~~-~gi~~~Ps~spdG~~ivf~Sdr~G~----------p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLT---NG-FGINTSPSWSPDGSKIVFTSDRGGR----------PQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred CccEEEEcCCCCcceecc---cC-CccccCccCCCCCCEEEEEeCCCCC----------cceEEECCCCCceeEeeccCC
Confidence 457999999888744432 11 222222222224 455554333221 356677988888777764321
Q ss_pred CCCCceeeEEEEeCCEEEEEcCCCCCCCCcccccccCeEEEEEcCCCc-eEEcccC
Q 010770 231 APSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ-WKRLPIG 285 (501)
Q Consensus 231 ~p~~r~~~s~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~-W~~v~~~ 285 (501)
...+-...-+++.++|-+.. .+ . -++..+|+.+.. |+.+...
T Consensus 327 ----~~~~p~~SpdG~~i~~~~~~-~g-------~-~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 327 ----GNSNPVWSPDGDKIVFESSS-GG-------Q-WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred ----CCcCccCCCCCCEEEEEecc-CC-------c-eeeEEeccCCCCcEEEcccc
Confidence 11122223344334443333 12 1 568889987776 8887764
No 173
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=21.36 E-value=8.5e+02 Score=24.55 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=58.0
Q ss_pred CcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEeCCEEEEEccccCCCCCCcEEEEEC
Q 010770 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (501)
Q Consensus 30 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 109 (501)
+..+.+.||.++. .++++..++.|-..-+ .-.--.-.++...++.+.+.|+.++ .+.++..
T Consensus 75 ~~~l~aTGGgDD~-----AflW~~~~ge~~~elt---------gHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~ 135 (399)
T KOG0296|consen 75 NNNLVATGGGDDL-----AFLWDISTGEFAGELT---------GHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKV 135 (399)
T ss_pred CCceEEecCCCce-----EEEEEccCCcceeEec---------CCCCceEEEEEccCceEEEecCCCc-----cEEEEEc
Confidence 4678888886543 5677888888644221 1111222344556788888888765 3445554
Q ss_pred CCC--eEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEc
Q 010770 110 DIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (501)
Q Consensus 110 ~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 168 (501)
.++ +|....+..++-= +.......|+++|-.++ .+|+|.+.+..-.++
T Consensus 136 stg~~~~~~~~e~~dieW------l~WHp~a~illAG~~DG-----svWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEW------LKWHPRAHILLAGSTDG-----SVWMWQIPSQALCKV 185 (399)
T ss_pred ccCceEEEeecccCceEE------EEecccccEEEeecCCC-----cEEEEECCCcceeeE
Confidence 443 4544322111100 00112336677765544 389998887544433
No 174
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.58 E-value=1.2e+03 Score=26.03 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred EEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcceeEEEEe--CCEEEEEccccCCCCC
Q 010770 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRL 101 (501)
Q Consensus 24 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~ 101 (501)
++..-.++.+++.|+.+++ |-+||..++-... ....+-++++++.. .+++.+..-.++....
T Consensus 355 ~l~YSpDgq~iaTG~eDgK-----VKvWn~~SgfC~v-----------TFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGK-----VKVWNTQSGFCFV-----------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred eEEECCCCcEEEeccCCCc-----EEEEeccCceEEE-----------EeccCCCceEEEEEEecCCEEEEeecCCeEEe
Q ss_pred CcEEEEECCCCeEEEEecCCCCCCcCCccEEEEEcCcEEEEEecCCCCcccccEEEEECCCCceEEcccCCCCCCCCcce
Q 010770 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (501)
Q Consensus 102 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 181 (501)
=|+..| ...+... .|.++.+.+.++-..|.|.+.|+.+.-. +++++..|++-..+- .-..+-...
T Consensus 419 wDlkRY----rNfRTft----~P~p~QfscvavD~sGelV~AG~~d~F~----IfvWS~qTGqllDiL---sGHEgPVs~ 483 (893)
T KOG0291|consen 419 WDLKRY----RNFRTFT----SPEPIQFSCVAVDPSGELVCAGAQDSFE----IFVWSVQTGQLLDIL---SGHEGPVSG 483 (893)
T ss_pred eeeccc----ceeeeec----CCCceeeeEEEEcCCCCEEEeeccceEE----EEEEEeecCeeeehh---cCCCCccee
Q ss_pred eEEEeCCEEEEEcccCCCCCcccccccccccccccCCCC--ceEEeecCCC-----CCCCceeeEEEEeCCEEEEE
Q 010770 182 TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQ-----APSSRCGHTITSGGHYLLLF 250 (501)
Q Consensus 182 ~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~--~W~~~~~~g~-----~p~~r~~~s~~~~~~~i~v~ 250 (501)
-+....+.+.+-|.+. +.+-.+|+-.. +-+.+....+ ..+....-+++..++.|-++
T Consensus 484 l~f~~~~~~LaS~SWD------------kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 484 LSFSPDGSLLASGSWD------------KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred eEEccccCeEEecccc------------ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEE
No 175
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=20.07 E-value=8.8e+02 Score=24.24 Aligned_cols=208 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred eEEeeeCCCCCCCCCCC----cCcEEEEECCcEEEEEcccCCCccCCceEEEEcCCCcEEeceecCCCCCCCCCCCCcce
Q 010770 4 WVRASSSDFGGTVPQPR----SGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAF 79 (501)
Q Consensus 4 W~~~~~~~~~g~~P~~R----~~h~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~p~~R~~ 79 (501)
|..+.-....|..|.+| .-|.+..--+++.++.--.+. +.+..|+...+.-........ .|..=-.
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~----Dri~~y~~~dg~L~~~~~~~v------~~G~GPR 194 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT----DRIFLYDLDDGKLTPADPAEV------KPGAGPR 194 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC----ceEEEEEcccCcccccccccc------CCCCCcc
Q ss_pred eEEEEeCCEE-EEEccccCCCCCCcEEEEECCCCeEEEEec----CCCCCCcCCccEEEEEcCcEEEEEecCCCCccccc
Q 010770 80 HIAVAIDCHM-FIFGGRFGSRRLGDFWVLDTDIWQWSELTS----FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSD 154 (501)
Q Consensus 80 h~~~~~~~~i-yv~GG~~~~~~~~~~~~yd~~t~~W~~~~~----~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (501)
|-+.--++++ |++.=.++.- +++.||....+..++.+ ..+....+...+..+..+|+.+..--+..+ .-.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV---~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--sI~ 269 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTV---DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--SIA 269 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEE---EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC--eEE
Q ss_pred EEEEECCCCceEEcccCCCCCCCCcceeEEEeCCEEEEEcccCCCCCcccccccccccccccCCCCceEEeecCCCCCCC
Q 010770 155 VYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSS 234 (501)
Q Consensus 155 ~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~Yd~~t~~W~~~~~~g~~p~~ 234 (501)
++..|+.+++-..+......-.--..+.+...++.|++.+=.+.. -.++.-|++|+.-+.+...-..|.|
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~----------i~vf~~d~~TG~L~~~~~~~~~p~P 339 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN----------ITVFERDKETGRLTLLGRYAVVPEP 339 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc----------EEEEEEcCCCceEEecccccCCCCc
Q ss_pred ce
Q 010770 235 RC 236 (501)
Q Consensus 235 r~ 236 (501)
.+
T Consensus 340 vc 341 (346)
T COG2706 340 VC 341 (346)
T ss_pred EE
Done!