Your job contains 1 sequence.
>010771
MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP
PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE
LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD
GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV
PNWRPRRLGGGLGTTRVGGEEVNQRYSGREQEPSRGPSRSAEPRIREDRHGDRDRERSRE
RGRDREREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRERERDRGRERDRDRTRDRDR
GRDRGRDHERDREKDRDKERDRDRTRERERDRDYEVGDPDRDRGYSRDRDSDYDRIDSKH
ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR
YDRATSESRDKERTRDLDREY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010771
(501 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37... 637 4.1e-73 2
UNIPROTKB|E2QRU8 - symbol:SNRNP70 "Uncharacterized protei... 286 3.8e-55 3
UNIPROTKB|P09406 - symbol:snrnp70 "U1 small nuclear ribon... 281 5.1e-55 3
MGI|MGI:98341 - symbol:Snrnp70 "small nuclear ribonucleop... 286 1.1e-54 3
UNIPROTKB|P08621 - symbol:SNRNP70 "U1 small nuclear ribon... 286 1.2e-54 3
UNIPROTKB|F6V5G7 - symbol:SNRNP70 "Uncharacterized protei... 286 1.3e-54 3
UNIPROTKB|Q1RMR2 - symbol:SNRNP70 "U1 small nuclear ribon... 286 1.3e-54 3
UNIPROTKB|I3LNE5 - symbol:SNRNP70 "Uncharacterized protei... 286 2.6e-54 3
ZFIN|ZDB-GENE-040825-2 - symbol:snrnp70 "small nuclear ri... 280 2.8e-54 3
UNIPROTKB|Q66II8 - symbol:snrnp70 "U1 small nuclear ribon... 274 2.9e-54 3
GENEDB_PFALCIPARUM|MAL13P1.338 - symbol:MAL13P1.338 "u1 s... 212 2.7e-43 3
UNIPROTKB|Q8ID37 - symbol:MAL13P1.338 "U1 small nuclear r... 212 2.7e-43 3
FB|FBgn0016978 - symbol:snRNP-U1-70K "small ribonucleopro... 233 3.7e-42 3
DICTYBASE|DDB_G0268004 - symbol:snrp70 "U1 small nuclear ... 224 4.6e-41 3
POMBASE|SPAC19A8.13 - symbol:usp101 "U1 snRNP-associated ... 245 4.5e-38 2
WB|WBGene00004390 - symbol:rnp-7 species:6239 "Caenorhabd... 244 4.5e-38 2
ASPGD|ASPL0000006999 - symbol:AN6903 species:162425 "Emer... 320 1.9e-35 2
RGD|1307120 - symbol:Snrnp70 "small nuclear ribonucleopro... 286 7.1e-34 2
UNIPROTKB|J9NZ89 - symbol:SNRNP70 "Uncharacterized protei... 286 1.9e-33 2
RGD|1310724 - symbol:Snrnp35 "small nuclear ribonucleopro... 133 7.2e-19 3
UNIPROTKB|Q5U1W5 - symbol:Snrnp35 "U11/U12 small nuclear ... 133 7.2e-19 3
ZFIN|ZDB-GENE-050706-77 - symbol:snrnp35 "small nuclear r... 144 2.0e-18 3
MGI|MGI:1923417 - symbol:Snrnp35 "small nuclear ribonucle... 134 2.8e-18 3
UNIPROTKB|F1P6U2 - symbol:SNRNP35 "Uncharacterized protei... 136 6.5e-18 3
UNIPROTKB|Q1LZH0 - symbol:SNRNP35 "U11/U12 small nuclear ... 135 2.3e-17 3
UNIPROTKB|I3LN96 - symbol:SNRNP35 "Uncharacterized protei... 136 3.4e-17 3
UNIPROTKB|Q16560 - symbol:SNRNP35 "U11/U12 small nuclear ... 132 2.6e-16 3
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi... 131 1.5e-15 3
SGD|S000001323 - symbol:SNP1 "Component of U1 snRNP requi... 128 1.9e-14 2
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 105 2.0e-12 3
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 105 1.7e-11 3
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 104 1.8e-11 3
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 104 5.4e-10 3
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 105 6.5e-10 3
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 105 6.9e-10 3
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 105 7.1e-10 3
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 105 7.1e-10 3
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 113 1.0e-09 3
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 105 3.4e-09 3
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 105 3.5e-09 3
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 97 5.9e-09 2
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 93 1.6e-08 2
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 103 2.9e-08 2
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 104 4.6e-08 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 97 4.9e-08 3
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 103 5.7e-08 3
UNIPROTKB|H7BXF3 - symbol:TRA2B "Transformer-2 protein ho... 104 5.8e-08 2
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 112 7.3e-08 3
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 99 7.8e-08 2
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 99 7.8e-08 2
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 97 8.9e-08 3
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 97 1.1e-07 3
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote... 107 1.1e-07 3
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"... 104 1.2e-07 3
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 97 1.5e-07 3
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"... 106 1.6e-07 3
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 91 1.8e-07 3
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 97 2.0e-07 3
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 97 2.0e-07 3
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 97 2.0e-07 3
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 97 2.1e-07 3
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 92 2.3e-07 3
FB|FBgn0003742 - symbol:tra2 "transformer 2" species:7227... 99 2.6e-07 3
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 105 3.0e-07 3
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 97 3.1e-07 3
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 105 3.5e-07 3
UNIPROTKB|F1NJ85 - symbol:SNRNP35 "Uncharacterized protei... 122 3.6e-07 2
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 105 3.8e-07 3
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 104 3.8e-07 3
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho... 104 4.4e-07 3
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"... 104 4.4e-07 3
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho... 104 4.4e-07 3
MGI|MGI:106016 - symbol:Tra2b "transformer 2 beta homolog... 104 4.4e-07 3
RGD|619886 - symbol:Tra2b "transformer 2 beta homolog (Dr... 104 4.4e-07 3
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 105 4.5e-07 3
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 103 4.8e-07 4
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 97 4.8e-07 3
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 86 4.8e-07 2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 97 4.9e-07 3
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 97 4.9e-07 3
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 97 4.9e-07 3
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein... 109 5.5e-07 3
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 105 7.3e-07 3
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 105 7.4e-07 3
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 105 7.4e-07 3
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 105 7.4e-07 3
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 105 7.5e-07 3
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 91 8.7e-07 3
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 96 1.1e-06 3
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 88 1.2e-06 2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 103 1.2e-06 3
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 103 1.3e-06 3
DICTYBASE|DDB_G0292710 - symbol:DDB_G0292710 "peptidylpro... 104 2.5e-06 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 88 3.1e-06 3
UNIPROTKB|B7ZMD9 - symbol:RBMY1D "RNA-binding motif prote... 86 3.2e-06 3
UNIPROTKB|J3KPK3 - symbol:RBMY1E "RNA-binding motif prote... 86 3.2e-06 3
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 97 3.5e-06 2
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 97 3.6e-06 3
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b... 99 4.3e-06 3
UNIPROTKB|A6NDE4 - symbol:RBMY1B "RNA-binding motif prote... 86 4.3e-06 3
WARNING: Descriptions of 124 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 637 (229.3 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 120/167 (71%), Positives = 133/167 (79%)
Query: 1 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60
MGD D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKP
Sbjct: 1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60
Query: 61 PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHXXXXXXXXXXXXXX 120
PPEKRKCPP TGMAQFVS+FAEPGDP YAPP + E P ++R RIH
Sbjct: 61 PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120
Query: 121 XXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
YDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREFESYGPIKR+
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167
Score = 300 (110.7 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 88/230 (38%), Positives = 109/230 (47%)
Query: 71 TGMAQFVSHFAEPGDPL-YAPPVEKAETPVERRARIHXXXXXXXXXXXXXXXXXYDPHND 129
TG+ + EP PL Y PP EK + P + Y P
Sbjct: 40 TGLTNNLLKLFEPRPPLEYKPPPEKRKCPP------YTGMAQFVSNFAEPGDPEYAPPK- 92
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGP----------IKRLICNSCNGGDS-S 178
P V K + +L E K + + Y P K L + N S S
Sbjct: 93 PEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSES 152
Query: 179 RDGKPCD-----EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+ + + ++V LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVD
Sbjct: 153 KIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVD 212
Query: 234 VERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEP 283
VERGRTVPNWRPR + G EQ+P S+S EP
Sbjct: 213 VERGRTVPNWRPRRLGGGLGTSRVGG---GEEIVG-EQQPQGRTSQSEEP 258
Score = 120 (47.3 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 31/81 (38%), Positives = 42/81 (51%)
Query: 420 HERDRHG--ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDND------RY 471
H+RDR ERDY+ + E + G + E+ RG + R Y DD D RY
Sbjct: 343 HDRDRSRKKERDYEGGEYEHEGGGRSRERDAEY-RGEPEETR-GYYEDDQGDTDRYSHRY 400
Query: 472 DQMEEDDYRYDRATSESRDKE 492
D+MEEDD+RY+R S+ E
Sbjct: 401 DKMEEDDFRYEREYKRSKRSE 421
Score = 92 (37.4 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 421 ERDRHGERDYD-PTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY-HDDDNDRYDQMEED- 477
ER+R E ++ P ++ DR D H + +G D DR ++ D DR D+ D
Sbjct: 274 ERERSRELSHEQPRERSRDRPREDKHHR-DRDQGGRDRDRDSRRDRDRTRDRGDRDRRDR 332
Query: 478 DYRYDRATSESRDKERTRDLDREY 501
D DR TS D++R+R +R+Y
Sbjct: 333 DRGRDR-TSRDHDRDRSRKKERDY 355
Score = 83 (34.3 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 28/84 (33%), Positives = 36/84 (42%)
Query: 419 KHERDR-HGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
KH RDR G RD D + D D + R G DR ++ HD D R + E D
Sbjct: 298 KHHRDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRG-RDRTSRDHDRDRSR--KKERD 354
Query: 478 DYRYDRATSESRDKERTRDLDREY 501
Y+ E R+R+ D EY
Sbjct: 355 ---YEGGEYEHEGGGRSRERDAEY 375
Score = 40 (19.1 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 470 RYDQMEEDDY-RYDRATS--ESRDKERTRDLDRE 500
R Q EE R +R S + +++ER+R+L E
Sbjct: 251 RTSQSEEPSRPREEREKSREKGKERERSRELSHE 284
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 286 (105.7 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 250 (93.1 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 50/94 (53%), Positives = 61/94 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R N R+SGR+ + SR R
Sbjct: 190 RRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 443 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 500
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 57 (25.1 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 425 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 483
H +RD D + +R + + E R D R ++ D + R + D +R
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 484 ATSESRDKERTRDLDRE 500
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
>UNIPROTKB|P09406 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8355 "Xenopus laevis" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 InterPro:IPR022023
Pfam:PF12220 EMBL:X12430 PIR:S02016 UniGene:Xl.5366
ProteinModelPortal:P09406 Xenbase:XB-GENE-992825 HOVERGEN:HBG012300
Uniprot:P09406
Length = 471
Score = 281 (104.0 bits), Expect = 5.1e-55, Sum P(3) = 5.1e-55
Identities = 66/147 (44%), Positives = 81/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ G + S GKP
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGS--GKP 146
Score = 240 (89.5 bits), Expect = 5.1e-55, Sum P(3) = 5.1e-55
Identities = 51/100 (51%), Positives = 63/100 (63%)
Query: 186 EKVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+++ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV
Sbjct: 130 KRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKG 189
Query: 243 WRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 282
WRPR N R+SGR+ + SR R E
Sbjct: 190 WRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRE 228
Score = 88 (36.0 bits), Expect = 5.1e-55, Sum P(3) = 5.1e-55
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
ERDR +RD + +++ D+ D + + R + D DR D D DR D R
Sbjct: 351 ERDRERDRDREKGEKDRDK---DRDRDRDRRRSHRDRDREK---DRDRDR-------DRR 397
Query: 481 YDRATSESRDKERTRDLDR 499
DR RDK+ R+ DR
Sbjct: 398 RDRDRDRERDKDHKRERDR 416
Score = 78 (32.5 bits), Expect = 5.7e-54, Sum P(3) = 5.7e-54
Identities = 29/79 (36%), Positives = 35/79 (44%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 481
R+R ERD D E DR D + + R + D DR D D DR D R
Sbjct: 350 RERDRERDRDREKGEKDRD-KDRDRDRDRRRSHRDRDREK---DRDRDR-------DRRR 398
Query: 482 DRATSESRDKERTRDLDRE 500
DR RD+ER +D RE
Sbjct: 399 DR----DRDRERDKDHKRE 413
Score = 74 (31.1 bits), Expect = 1.5e-53, Sum P(3) = 1.5e-53
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH----DDDNDRYDQMEE 476
ERDR ERD +E ++ + + R R + + D+ + ++
Sbjct: 224 ERDRERERDRRERSREREKEPRERRRSRSRERRRKSRSREKEERKRTREKSKDKDKEKDK 283
Query: 477 DDYRYDRAT-SESRDKERTRDLDRE 500
D+ DR S SR+++R RD DRE
Sbjct: 284 DNKDRDRKRRSRSRERKRERDRDRE 308
Score = 72 (30.4 bits), Expect = 2.4e-53, Sum P(3) = 2.4e-53
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 435 QEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERT 494
QE + + + R G+ DR ++ D D DR + D DR RD+ R
Sbjct: 343 QEPEEKSRERDRERDRDREKGEKDR-DKDRDRDRDRRRSHRDRDREKDR--DRDRDRRRD 399
Query: 495 RDLDRE 500
RD DRE
Sbjct: 400 RDRDRE 405
Score = 70 (29.7 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 427 ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
E +P ++ +R D + + +G D D+ D D DR D+ R DR
Sbjct: 340 ELKQEPEEKSRER---DRERDRDREKGEKDRDK-----DRDRDR-DRRRSHRDR-DREKD 389
Query: 487 ESRDKERTRDLDRE 500
RD++R RD DR+
Sbjct: 390 RDRDRDRRRDRDRD 403
Score = 65 (27.9 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 418 SKHERDRHGERDYDPTDQED-DRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQME 475
S +RDR +RD D + D DR + ++++ R GD + DN +Q E
Sbjct: 380 SHRDRDREKDRDRDRDRRRDRDRD-RERDKDHKRERDRGDRSEKREERVPDNGMVMEQAE 438
Query: 476 E--DDYRYDRATSESRD 490
E D D+ + +S D
Sbjct: 439 ETSQDMYLDQESMQSGD 455
Score = 65 (27.9 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
+RDR R + D+E DR D + R D +R ++ H + DR D+ E+ + R
Sbjct: 372 DRDRDRRRSHRDRDREKDRD-RDRDRRRDRDR---DRER-DKDHKRERDRGDRSEKREER 426
Query: 481 Y-DRATSESRDKERTRD--LDRE 500
D + +E ++D LD+E
Sbjct: 427 VPDNGMVMEQAEETSQDMYLDQE 449
Score = 59 (25.8 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 466 DDNDRYDQMEEDDYRYDRATSESRDKE---RTRDLDRE 500
DD RYD+ + + R R S R+KE R R RE
Sbjct: 217 DDTSRYDERDRERERDRRERSREREKEPRERRRSRSRE 254
Score = 50 (22.7 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGD-HDRYN-QYHDDDNDRYDQMEEDDY 479
+D+ E+D D D++ R E R +R + + D+ D + D
Sbjct: 275 KDKDKEKDKDNKDRDRKRRSRSRERKRERDRDREKKEERVEAEVPEADDAPQDDAQIGDL 334
Query: 480 RYDRATSESRDKERTRDLDRE 500
D + +E++R+ DRE
Sbjct: 335 GIDGIELKQEPEEKSRERDRE 355
Score = 41 (19.5 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 466 DDNDRYDQMEEDDYRYDRATSESRDKERTRD 496
D N R+ +D RYD RD+ER RD
Sbjct: 208 DVNIRHSG-RDDTSRYDE-----RDRERERD 232
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 286 (105.7 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 250 (93.1 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 50/94 (53%), Positives = 61/94 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R N R+SGR+ + SR R
Sbjct: 190 RRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 65 (27.9 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 22/77 (28%), Positives = 32/77 (41%)
Query: 425 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 483
H +RD D + +R + + E R D R ++ D D R + D DR
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKDERRRSRERSKDKDRDR 288
Query: 484 ATSESRDKERTRDLDRE 500
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 59 (25.8 bits), Expect = 4.5e-54, Sum P(3) = 4.5e-54
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 443 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 500
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D++
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKD 272
Score = 57 (25.1 bits), Expect = 7.3e-54, Sum P(3) = 7.3e-54
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQME 475
+ ER+R +RD D D+E RG + RG G + N D D Y + E
Sbjct: 371 RSERERRRDRDRD-RDREHKRGERGSERGRDEARGGGGSGQDNGLEGLGSDGRDMYMEAE 429
Query: 476 EDD 478
D
Sbjct: 430 GGD 432
Score = 57 (25.1 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 451 HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
H G D RY++ + + D R R S RDKER R R
Sbjct: 210 HSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSR 258
Score = 43 (20.2 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 465 DDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDREY 501
D ++ + + R R+ E R ++R RD DRE+
Sbjct: 353 DGPEEKGRDRDRERRRSHRSERERR-RDRDRDRDREH 388
Score = 43 (20.2 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR 459
RDR ER + + R D + EH RG +R
Sbjct: 360 RDRDRERRRSHRSERERRRDRDRDRDREHKRGERGSER 397
Score = 41 (19.5 bits), Expect = 3.4e-52, Sum P(3) = 3.4e-52
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 469 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
DR D+ +R +R RD++R R+ R
Sbjct: 361 DR-DRERRRSHRSERERRRDRDRDRDREHKR 390
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 286 (105.7 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 250 (93.1 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 50/94 (53%), Positives = 61/94 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R N R+SGR+ + SR R
Sbjct: 190 RRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 443 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 500
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 61 (26.5 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 425 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 483
H +RD D + +R + + E R D R ++ D + R + D DR
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDR 288
Query: 484 ATSESRDKERTRDLDRE 500
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 54 (24.1 bits), Expect = 8.2e-54, Sum P(3) = 8.2e-54
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 419 KHERDRHGERDYD-PTDQEDDRGWYDHHENYEHHRGYGD-HDR-YNQYHDDDNDRYDQME 475
+ ER+R +RD D D+E RG + RG G D +D D Y + E
Sbjct: 359 RSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESE 418
Query: 476 EDD 478
D
Sbjct: 419 GGD 421
Score = 51 (23.0 bits), Expect = 1.7e-53, Sum P(3) = 1.7e-53
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 469 DRYDQMEEDDYRYDRATSESRDKERTRDLDREY 501
DR D+ +R +R RD++R RD DRE+
Sbjct: 349 DR-DRERRRSHRSER--ERRRDRDRDRDRDREH 378
Score = 50 (22.7 bits), Expect = 2.1e-53, Sum P(3) = 2.1e-53
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT 485
GE D D +++G E HR + R D D DR D+ + + R +R +
Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRR-----DRDRDR-DR-DREHKRGERGS 385
Query: 486 SESRDKER 493
RD+ R
Sbjct: 386 ERGRDEAR 393
Score = 46 (21.3 bits), Expect = 5.6e-53, Sum P(3) = 5.6e-53
Identities = 25/97 (25%), Positives = 39/97 (40%)
Query: 419 KHERDRHGERDYDP---TDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD---DDN---- 468
+ R+R ++D D + + +R + E G GD ++ D DD
Sbjct: 275 RRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGE 334
Query: 469 ---DRYDQMEED--DYRYDRATSESRDKERTRDLDRE 500
D D EE D +R S ++ER RD DR+
Sbjct: 335 LGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRD 371
Score = 41 (19.5 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 465 DDDNDRY-DQMEEDDYRYDRATSESRDKERTR 495
D D +R E + R DR RD+E R
Sbjct: 349 DRDRERRRSHRSERERRRDRDRDRDRDREHKR 380
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 286 (105.7 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 250 (93.1 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 50/94 (53%), Positives = 61/94 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R N R+SGR+ + SR R
Sbjct: 190 RRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 443 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 500
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 57 (25.1 bits), Expect = 4.5e-54, Sum P(3) = 4.5e-54
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 425 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 483
H +RD D + +R + + E R D R ++ D + R + D +R
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 484 ATSESRDKERTRDLDRE 500
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 53 (23.7 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQME 475
+ ER+R +RD D D+E RG + RG G + N ++ D Y + E
Sbjct: 362 RSERERRRDRDRD-RDREHKRGERGGERGRDEARGGGGGGQDNGLEGLGNESRDMYMESE 420
Query: 476 EDD 478
D
Sbjct: 421 GGD 423
Score = 44 (20.5 bits), Expect = 1.0e-52, Sum P(3) = 1.0e-52
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 466 DDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 500
D D ++ D R +R S ++ER RD DR+
Sbjct: 341 DGPDGPEEKGRDRDR-ERRRSHRSERERRRDRDRD 374
Score = 43 (20.2 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 465 DDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDREY 501
D ++ + + R R+ E R ++R RD DRE+
Sbjct: 344 DGPEEKGRDRDRERRRSHRSERERR-RDRDRDRDREH 379
Score = 42 (19.8 bits), Expect = 1.7e-52, Sum P(3) = 1.7e-52
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRG 453
RDR ER + + R D + EH RG
Sbjct: 351 RDRDRERRRSHRSERERRRDRDRDRDREHKRG 382
Score = 41 (19.5 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 469 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
DR D+ +R +R RD++R R+ R
Sbjct: 352 DR-DRERRRSHRSERERRRDRDRDRDREHKR 381
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 286 (105.7 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 250 (93.1 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 50/94 (53%), Positives = 61/94 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R N R+SGR+ + SR R
Sbjct: 190 RRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 443 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 500
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 61 (26.5 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 425 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 483
H +RD D + +R + + E R D R ++ D + R + D DR
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDR 288
Query: 484 ATSESRDKERTRDLDRE 500
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 55 (24.4 bits), Expect = 7.3e-54, Sum P(3) = 7.3e-54
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQME 475
+ ER+R +RD D D+E RG + RG G + N +D D Y + E
Sbjct: 362 RSERERRRDRDRD-RDREHKRGERGGDRGRDEARGGGGGGQDNGLEGLGNDGRDMYMESE 420
Query: 476 EDD 478
D
Sbjct: 421 GGD 423
Score = 48 (22.0 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 466 DDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 500
D D ++ D R DR S ++ER RD DR+
Sbjct: 341 DGPDGPEEKGRDRDR-DRRRSHRSERERRRDRDRD 374
Score = 43 (20.2 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR 459
RDR +R + + R D + EH RG DR
Sbjct: 351 RDRDRDRRRSHRSERERRRDRDRDRDREHKRGERGGDR 388
Score = 40 (19.1 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 469 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
DR D+ +R +R RD++R R+ R
Sbjct: 352 DR-DRDRRRSHRSERERRRDRDRDRDREHKR 381
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 286 (105.7 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 250 (93.1 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 50/94 (53%), Positives = 61/94 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R N R+SGR+ + SR R
Sbjct: 190 RRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDER 222
Score = 62 (26.9 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 443 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDRE 500
D Y+ G ++ D + +R ++ E D +R S SRD+ R +R D+E
Sbjct: 214 DDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKE 272
Score = 57 (25.1 bits), Expect = 8.8e-54, Sum P(3) = 8.8e-54
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 425 HGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRYNQYHDDDNDRYDQMEEDDYRYDR 483
H +RD D + +R + + E R D R ++ D + R + D +R
Sbjct: 230 HRDRDRDRERERRERS-RERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRER 288
Query: 484 ATSESRDKERTRDLDRE 500
SR +ER R +RE
Sbjct: 289 KRRSSRSRERARR-ERE 304
Score = 48 (22.0 bits), Expect = 7.7e-53, Sum P(3) = 7.7e-53
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ +RDR ERD+ ++ +RG E G G + +D D Y + E D
Sbjct: 380 RRDRDRDRERDHKRGERGGERG---RDEARGGGGGGGQDNGLEGLGNDSRDMYMEAEGGD 436
Score = 46 (21.3 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
Identities = 19/68 (27%), Positives = 26/68 (38%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT 485
GE D + +++G E HR + R D D DR E D R +R
Sbjct: 348 GELGPDGPEGPEEKGRDRDRERRRSHRSERERRR-----DRDRDR----ERDHKRGERGG 398
Query: 486 SESRDKER 493
RD+ R
Sbjct: 399 ERGRDEAR 406
Score = 45 (20.9 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 469 DRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
DR D+ +R +R RD++R RD R
Sbjct: 364 DR-DRERRRSHRSERERRRDRDRDRERDHKR 393
Score = 42 (19.8 bits), Expect = 3.2e-52, Sum P(3) = 3.2e-52
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 482 DRATSESRDKERTRDLDRE 500
+R S ++ER RD DR+
Sbjct: 368 ERRRSHRSERERRRDRDRD 386
Score = 41 (19.5 bits), Expect = 4.1e-52, Sum P(3) = 4.1e-52
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ R++ R RD DRE
Sbjct: 371 RSHRSERERRRDRDRDRE 388
Score = 38 (18.4 bits), Expect = 8.5e-52, Sum P(3) = 8.5e-52
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRG 453
RDR ER + + R D +H RG
Sbjct: 363 RDRDRERRRSHRSERERRRDRDRDRERDHKRG 394
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 280 (103.6 bits), Expect = 2.8e-54, Sum P(3) = 2.8e-54
Identities = 61/131 (46%), Positives = 75/131 (57%)
Query: 42 LTANLLKLFEPRAPLEYKP-----PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ + P P EK P G+A F+ HF +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPFLPQLGKLPHEKHHNQPYCGIAPFIRHFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERLERKRREKMERRQVVVEGELKLWDPHNDANAQGDAFKTLFVARINYDTTESKLRR 121
Query: 157 EFESYGPIKRL 167
EFE YGPIKR+
Sbjct: 122 EFEVYGPIKRI 132
Score = 251 (93.4 bits), Expect = 2.8e-54, Sum P(3) = 2.8e-54
Identities = 50/94 (53%), Positives = 63/94 (67%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V +K+T KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R N ++SGR+ + SR R
Sbjct: 190 RRLGGGLGGTRRGGADVNIKHSGRD-DTSRYDDR 222
Score = 74 (31.1 bits), Expect = 2.8e-54, Sum P(3) = 2.8e-54
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 418 SKHERDRHGERDYD-PTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDD-NDRYDQME 475
S +RDR R+ D++ +RG + E R H+R D+ + E
Sbjct: 226 SDRDRDRGERRERSRERDRDKERGERRRSRSRERRRHTRSHERERAAAGDEAGGSSRRRE 285
Query: 476 EDDYRYDRATSESRDKERTRDLDRE 500
+ R ESR++ R RD DR+
Sbjct: 286 RERERGGAGAGESRERSRDRDRDRD 310
Score = 68 (29.0 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 421 ERDRHGERDYDPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHD 465
ERDR +R + D+E DR D + +H R GD DR + D
Sbjct: 383 ERDRDRKRSHRDKDRERDRDRRRDRDRDRDHKRDRGDRDRGERRED 428
Score = 65 (27.9 bits), Expect = 2.4e-53, Sum P(3) = 2.4e-53
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYE--HHRGYGDHD 458
+ +RDR +RD D D + DRG D E E H GDH+
Sbjct: 398 ERDRDRRRDRDRD-RDHKRDRGDRDRGERREDRHITSSGDHE 438
Score = 64 (27.6 bits), Expect = 3.1e-53, Sum P(3) = 3.1e-53
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 466 DDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 500
DD RYD R DR E R++ R RD D+E
Sbjct: 214 DDTSRYDDRPIGSDR-DRDRGERRERSRERDRDKE 247
Score = 62 (26.9 bits), Expect = 5.0e-53, Sum P(3) = 5.0e-53
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 438 DRGWYDHHENYEHHRGY-GDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRD 496
DRG D E RG G + + D D DR + + D R R RD++R RD
Sbjct: 350 DRGIEDPLGG-EPGRGEEGGPEGEERGRDRDKDR--ERDRDRKRSHRDKDRERDRDRRRD 406
Query: 497 LDRE 500
DR+
Sbjct: 407 RDRD 410
Score = 61 (26.5 bits), Expect = 6.3e-53, Sum P(3) = 6.3e-53
Identities = 24/75 (32%), Positives = 29/75 (38%)
Query: 426 GERDY-DPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRA 484
G+R DP E RG E E R D DR + D DR + D DR
Sbjct: 349 GDRGIEDPLGGEPGRGEEGGPEGEERGRDR-DKDR-----ERDRDRKRSHRDKDRERDRD 402
Query: 485 TSESRDKERTRDLDR 499
RD++R DR
Sbjct: 403 RRRDRDRDRDHKRDR 417
Score = 52 (23.4 bits), Expect = 5.5e-52, Sum P(3) = 5.5e-52
Identities = 21/75 (28%), Positives = 28/75 (37%)
Query: 421 ERDRHGE-RDYDPTDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQMEEDD 478
ER RH + + D+ G E RG G + + D D DR D
Sbjct: 258 ERRRHTRSHERERAAAGDEAGGSSRRRERERERGGAGAGESRERSRDRDRDR------DR 311
Query: 479 YRYDRATSESRDKER 493
R R+ RD+ER
Sbjct: 312 KRRSRSRDRKRDRER 326
Score = 40 (19.1 bits), Expect = 9.9e-51, Sum P(3) = 9.9e-51
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 482 DRATSESRDKERTRDLDREY 501
+R +D+ER RD R +
Sbjct: 373 ERGRDRDKDRERDRDRKRSH 392
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 274 (101.5 bits), Expect = 2.9e-54, Sum P(3) = 2.9e-54
Identities = 61/131 (46%), Positives = 75/131 (57%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRL 167
EFE YGPIKR+
Sbjct: 122 EFEVYGPIKRI 132
Score = 252 (93.8 bits), Expect = 2.9e-54, Sum P(3) = 2.9e-54
Identities = 50/97 (51%), Positives = 63/97 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+++ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRP
Sbjct: 130 KRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 189
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 282
R N R+SGR+ + SR R +
Sbjct: 190 RRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRD 225
Score = 77 (32.2 bits), Expect = 2.9e-54, Sum P(3) = 2.9e-54
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 427 ERDYDPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT 485
E +P ++ DR D ++ + R D DR + D + D+ D+ + D R DR
Sbjct: 345 ELKQEPEEKNRDRDRERDREKDRDKDRDR-DRDRRRSHRDRERDK-DRERDRDRRRDRDR 402
Query: 486 SESRDKERTRDLDR 499
RD++ R+ DR
Sbjct: 403 DRDRDRDHKRERDR 416
Score = 75 (31.5 bits), Expect = 4.7e-54, Sum P(3) = 4.7e-54
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ R+R ER+ + + R E E R + R ++ D D D+ + ++D
Sbjct: 234 ERSRERDKERERRRSRSRERRRRSRSREKEERKRSR-ERSR-DKDKDKDKDKDKEKDKDK 291
Query: 479 YRYDRATSESRDKERTRDLDRE 500
R + S SR+++R RD DRE
Sbjct: 292 DRDRKRRSRSRERKRERDRDRE 313
Score = 68 (29.0 bits), Expect = 2.5e-53, Sum P(3) = 2.5e-53
Identities = 17/82 (20%), Positives = 33/82 (40%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ + R+ ERD D + D R + R +R + + + + E
Sbjct: 213 RDDTSRYDERDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKEERKRSRERS 272
Query: 479 YRYDRATSESRDKERTRDLDRE 500
D+ + +DKE+ +D DR+
Sbjct: 273 RDKDKDKDKDKDKEKDKDKDRD 294
Score = 67 (28.6 bits), Expect = 3.2e-53, Sum P(3) = 3.2e-53
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 421 ERDRHGERDYDPT-DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQMEE-- 476
ERD+ ERD D D++ DR D +++ R GD + DN +Q EE
Sbjct: 385 ERDKDRERDRDRRRDRDRDR---DRDRDHKRERDRGDRGEKREERVPDNGMVMEQAEETS 441
Query: 477 DDYRYDRATSESRD 490
D D+ + +S D
Sbjct: 442 QDMYLDQESMQSGD 455
Score = 66 (28.3 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 451 HRGYGDHDRYNQYHDD---DNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 500
H G D RY++ D + DR ++ E D +R S SR++ R R RE
Sbjct: 210 HSGRDDTSRYDERDRDRERERDRRERSRERDKERERRRSRSRERRR-RSRSRE 261
Score = 63 (27.2 bits), Expect = 8.4e-53, Sum P(3) = 8.4e-53
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDY 479
+RD+ +RD D DR E R D DR ++ H + DR D+ E+ +
Sbjct: 366 DRDKDRDRDRDRRRSHRDRERDKDRERDRDRRRDRDRDRDRDRDHKRERDRGDRGEKREE 425
Query: 480 RY-DRATSESRDKERTRD--LDRE 500
R D + +E ++D LD+E
Sbjct: 426 RVPDNGMVMEQAEETSQDMYLDQE 449
Score = 58 (25.5 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 456 DHDRYNQYHDDDNDRYDQMEEDDYR-YDRATSESRDKERTRDLDRE 500
+ DR D D DR D+ +R +R RD++R RD DR+
Sbjct: 360 ERDREKD-RDKDRDR-DRDRRRSHRDRERDKDRERDRDRRRDRDRD 403
Score = 58 (25.5 bits), Expect = 2.8e-52, Sum P(3) = 2.8e-52
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 481
R+R ERD D ++++DR + E+ + + D + D + + EE +
Sbjct: 302 RERKRERDRD-REKKEDRVEGEVPESVDVPQ---DDAQTGDLGIDGIELKQEPEEKNRDR 357
Query: 482 DRATSESRDKERTRDLDRE 500
DR +D+++ RD DR+
Sbjct: 358 DRERDREKDRDKDRDRDRD 376
Score = 48 (22.0 bits), Expect = 3.1e-51, Sum P(3) = 3.1e-51
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
K ER R ER D D++ D+ D ++ + R D R ++ + +R E+ +
Sbjct: 262 KEERKRSRERSRDK-DKDKDKD-KDKEKDKDKDR---DRKRRSRSRERKRERDRDREKKE 316
Query: 479 YRYDRATSES----RDKERTRDL 497
R + ES +D +T DL
Sbjct: 317 DRVEGEVPESVDVPQDDAQTGDL 339
Score = 37 (18.1 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 480 RYDRATSESRDKERTRDLDRE 500
R+ SR ER RD +RE
Sbjct: 209 RHSGRDDTSRYDERDRDRERE 229
>GENEDB_PFALCIPARUM|MAL13P1.338 [details] [associations]
symbol:MAL13P1.338 "u1 small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 212 (79.7 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 47/125 (37%), Positives = 72/125 (57%)
Query: 41 GLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVE 100
G+ ++L LF+ R LE+ P +K+K +G++ F+++F E G+ APP K E+ E
Sbjct: 5 GMPQHILILFQARPMLEFYKPIKKKKPKEYSGLSDFLNYFEE-GE---APPKIKVESFKE 60
Query: 101 RRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFES 160
R+ + YDP + +++ DP KTLF+ RLSYE +E K+K+EFES
Sbjct: 61 RKEKKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFES 120
Query: 161 YGPIK 165
YG IK
Sbjct: 121 YGKIK 125
Score = 203 (76.5 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
V+++ DK KPRGYAFIE+ HT+ M AYK ADG+K++ RR+LVD+ERGRT+ NW PR
Sbjct: 127 VKIIYDKNL-KPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGRTIKNWIPR 184
Score = 136 (52.9 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 419 KHER-DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY--HD--DDNDRYD 472
KH+R D++ D YD D+ D YD H+ Y+ H Y H+R+++Y HD D DR+D
Sbjct: 310 KHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDRHDKYDRHNRHDKYDRHDRHDKYDRHD 369
Query: 473 QMEEDDYRYDRATSESRDKE 492
+ D YD +T + KE
Sbjct: 370 KHHNSDNPYDNSTKDDIRKE 389
Score = 130 (50.8 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 423 DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD--DDNDRYDQMEEDDY 479
DRHG D +D D+ D YD H+ Y+ H Y HDRY++ HD D ++R+D+ + D
Sbjct: 303 DRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDR-HDKYDRHNRHDKYDRHD- 360
Query: 480 RYDRATSESRDKERTRD 496
R+D+ + DK D
Sbjct: 361 RHDKY--DRHDKHHNSD 375
Score = 111 (44.1 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDN-DRYDQMEEDDY 479
+R H R D + + DR +YD H ++ H + +DR ++Y D DR+D+ ++ D
Sbjct: 281 DRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHD- 339
Query: 480 RYDRATSESRDKERTRD-LDR 499
RYDR + D+ D DR
Sbjct: 340 RYDR--HDKYDRHNRHDKYDR 358
Score = 84 (34.6 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 419 KHER-DRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDD---NDRYDQ 473
KH+R DRH + YD ++ D +D H+ Y+ H + + D Y+ DD + +
Sbjct: 337 KHDRYDRHDK--YDRHNRHDKYDRHDRHDKYDRHDKHHNSDNPYDNSTKDDIRKENEIND 394
Query: 474 MEEDDYRYDRATSE 487
++ +DY +R +E
Sbjct: 395 IQHNDYENNREHNE 408
Score = 81 (33.6 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 29/90 (32%), Positives = 40/90 (44%)
Query: 419 KHER-DRH---GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHD--DDNDRY 471
KH R D H +RD + + HH++ R D DR Y H D +DR+
Sbjct: 255 KHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRH 314
Query: 472 DQMEEDDYRYDRATSESR-DKERTRD-LDR 499
D+ + +D +YDR R DK D DR
Sbjct: 315 DKYDRND-KYDRHDKYDRHDKYDKHDRYDR 343
Score = 63 (27.2 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 425 HGERDYDPTDQEDD------RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ ER+ D D EDD R Y HH + +H RG R+ + +DR+
Sbjct: 234 YNERNND--DDEDDGISSTMRD-YKHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHR-- 288
Query: 479 YRYDRATSESRDK 491
R DR+ + RD+
Sbjct: 289 -RRDRSRDD-RDR 299
Score = 49 (22.3 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 460 YNQYH-DDDNDRYDQMEEDDYRYDRATSESRDKERTR 495
YN+ + DDD D DY++ R+ R +R R
Sbjct: 234 YNERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDR 270
Score = 44 (20.5 bits), Expect = 9.9e-34, Sum P(3) = 9.9e-34
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 419 KHERDRHGERDYDPTDQED--------DRGWYDHHENYEHHRGY 454
+H++ + + YD + ++D D D+ N EH+ G+
Sbjct: 367 RHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHNEGF 410
>UNIPROTKB|Q8ID37 [details] [associations]
symbol:MAL13P1.338 "U1 small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:AL844509 HSSP:P09651 GO:GO:0005685 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OMA:RHDKYDR RefSeq:XP_001350382.1
ProteinModelPortal:Q8ID37 EnsemblProtists:MAL13P1.338:mRNA
GeneID:813905 KEGG:pfa:MAL13P1.338 EuPathDB:PlasmoDB:PF3D7_1367100
HOGENOM:HOG000281766 ProtClustDB:CLSZ2433754 Uniprot:Q8ID37
Length = 423
Score = 212 (79.7 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 47/125 (37%), Positives = 72/125 (57%)
Query: 41 GLTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVE 100
G+ ++L LF+ R LE+ P +K+K +G++ F+++F E G+ APP K E+ E
Sbjct: 5 GMPQHILILFQARPMLEFYKPIKKKKPKEYSGLSDFLNYFEE-GE---APPKIKVESFKE 60
Query: 101 RRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFES 160
R+ + YDP + +++ DP KTLF+ RLSYE +E K+K+EFES
Sbjct: 61 RKEKKKKEKMAYNELILKEKRKEYDPFKNEDLTSDPKKTLFIGRLSYEVSEQKLKKEFES 120
Query: 161 YGPIK 165
YG IK
Sbjct: 121 YGKIK 125
Score = 203 (76.5 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
V+++ DK KPRGYAFIE+ HT+ M AYK ADG+K++ RR+LVD+ERGRT+ NW PR
Sbjct: 127 VKIIYDKNL-KPRGYAFIEFEHTKSMNDAYKLADGKKIENRRILVDIERGRTIKNWIPR 184
Score = 136 (52.9 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 419 KHER-DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY--HD--DDNDRYD 472
KH+R D++ D YD D+ D YD H+ Y+ H Y H+R+++Y HD D DR+D
Sbjct: 310 KHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDRHDKYDRHNRHDKYDRHDRHDKYDRHD 369
Query: 473 QMEEDDYRYDRATSESRDKE 492
+ D YD +T + KE
Sbjct: 370 KHHNSDNPYDNSTKDDIRKE 389
Score = 130 (50.8 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 423 DRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD--DDNDRYDQMEEDDY 479
DRHG D +D D+ D YD H+ Y+ H Y HDRY++ HD D ++R+D+ + D
Sbjct: 303 DRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHDRYDR-HDKYDRHNRHDKYDRHD- 360
Query: 480 RYDRATSESRDKERTRD 496
R+D+ + DK D
Sbjct: 361 RHDKY--DRHDKHHNSD 375
Score = 111 (44.1 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDN-DRYDQMEEDDY 479
+R H R D + + DR +YD H ++ H + +DR ++Y D DR+D+ ++ D
Sbjct: 281 DRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRHDKYDRNDKYDRHDKYDRHDKYDKHD- 339
Query: 480 RYDRATSESRDKERTRD-LDR 499
RYDR + D+ D DR
Sbjct: 340 RYDR--HDKYDRHNRHDKYDR 358
Score = 84 (34.6 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 419 KHER-DRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDD---NDRYDQ 473
KH+R DRH + YD ++ D +D H+ Y+ H + + D Y+ DD + +
Sbjct: 337 KHDRYDRHDK--YDRHNRHDKYDRHDRHDKYDRHDKHHNSDNPYDNSTKDDIRKENEIND 394
Query: 474 MEEDDYRYDRATSE 487
++ +DY +R +E
Sbjct: 395 IQHNDYENNREHNE 408
Score = 81 (33.6 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 29/90 (32%), Positives = 40/90 (44%)
Query: 419 KHER-DRH---GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHD--DDNDRY 471
KH R D H +RD + + HH++ R D DR Y H D +DR+
Sbjct: 255 KHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHRRRDRSRDDRDRNYYDRHGRHDKHDRH 314
Query: 472 DQMEEDDYRYDRATSESR-DKERTRD-LDR 499
D+ + +D +YDR R DK D DR
Sbjct: 315 DKYDRND-KYDRHDKYDRHDKYDKHDRYDR 343
Score = 63 (27.2 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 425 HGERDYDPTDQEDD------RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ ER+ D D EDD R Y HH + +H RG R+ + +DR+
Sbjct: 234 YNERNND--DDEDDGISSTMRD-YKHHRSDDHRRGSKRDRRHRSRRSESSDRHHHKHR-- 288
Query: 479 YRYDRATSESRDK 491
R DR+ + RD+
Sbjct: 289 -RRDRSRDD-RDR 299
Score = 49 (22.3 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 460 YNQYH-DDDNDRYDQMEEDDYRYDRATSESRDKERTR 495
YN+ + DDD D DY++ R+ R +R R
Sbjct: 234 YNERNNDDDEDDGISSTMRDYKHHRSDDHRRGSKRDR 270
Score = 44 (20.5 bits), Expect = 9.9e-34, Sum P(3) = 9.9e-34
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 419 KHERDRHGERDYDPTDQED--------DRGWYDHHENYEHHRGY 454
+H++ + + YD + ++D D D+ N EH+ G+
Sbjct: 367 RHDKHHNSDNPYDNSTKDDIRKENEINDIQHNDYENNREHNEGF 410
>FB|FBgn0016978 [details] [associations]
symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
"U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
"protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
Length = 448
Score = 233 (87.1 bits), Expect = 3.7e-42, Sum P(3) = 3.7e-42
Identities = 45/85 (52%), Positives = 56/85 (65%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+K+ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER RTV W P
Sbjct: 129 KKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLP 188
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGRE 270
R N ++SGRE
Sbjct: 189 RRLGGGLGGTRRGGNDVNIKHSGRE 213
Score = 223 (83.6 bits), Expect = 3.7e-42, Sum P(3) = 3.7e-42
Identities = 48/131 (36%), Positives = 73/131 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L NLL LF R P+ + PP P ++K G+A+F++ F +P D VE +
Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQE 64
Query: 98 PVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
+ERR R +DP N + DP++TLF+AR++Y+T+ESK++RE
Sbjct: 65 RLERRRR---EKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 158 FESYGPIKRLI 168
FE YGPIK+++
Sbjct: 122 FEFYGPIKKIV 132
Score = 75 (31.5 bits), Expect = 3.7e-42, Sum P(3) = 3.7e-42
Identities = 25/86 (29%), Positives = 37/86 (43%)
Query: 423 DRHGERDYDPTDQEDDRG-------WYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQM 474
+R R + D+E DRG + E R G +RY+++ D DR D+
Sbjct: 254 ERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEF--DRRDRRDRE 311
Query: 475 EEDDYRYDRATSESRDKERTRDLDRE 500
E D +R + R K R R+ RE
Sbjct: 312 RERDRDREREKKKKRSKSRERESSRE 337
Score = 51 (23.0 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 27/95 (28%), Positives = 39/95 (41%)
Query: 418 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
S+ RDR ERD G R G +RY+++ D DR D+ E
Sbjct: 260 SRERRDR--ERDRG-RGAVASNGRSRSRSRERRKRRAGSRERYDEF--DRRDRRDRERER 314
Query: 478 DYRYDRAT----SESRDKERTRDL--------DRE 500
D +R S+SR++E +R+ DRE
Sbjct: 315 DRDREREKKKKRSKSRERESSRERRERKRERRDRE 349
Score = 46 (21.3 bits), Expect = 3.9e-39, Sum P(3) = 3.9e-39
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 418 SKHERDRHG-ERDYDPTDQEDD-RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 475
++ ER+R+ ER+ + D+E RG + + RG+G R ++ + + D+
Sbjct: 215 NERERERYRLERERE--DREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGR 272
Query: 476 EDDYRYDRATSESRDKERTRDLDRE 500
R+ S SR++ + R RE
Sbjct: 273 GAVASNGRSRSRSRERRKRRAGSRE 297
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 224 (83.9 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 44/92 (47%), Positives = 55/92 (59%)
Query: 194 KETNKPR---GYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXX 250
K++N P GYAFIE+ RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR
Sbjct: 132 KDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGG 191
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 282
NQ +SGRE SR + E
Sbjct: 192 GLGNTRAGGVDVNQTFSGREMSESREKEKERE 223
Score = 220 (82.5 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 45/128 (35%), Positives = 68/128 (53%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRKCPPLTGMAQFVSHFAEPG--DPLYAPPVEKAETPV 99
L NL +F PR P + PPP PP TG+ ++S F +P +P +E E
Sbjct: 4 LPPNLKIMFNPRHPPPFLPPPPPSNLPPYTGLRDYLSIFTDPSNEEPFKKEHIENLE--- 60
Query: 100 ERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
E+R + +DP+++ +GDPYKT+FV+R+SY+TT+ K++ EF
Sbjct: 61 EKREKKRKLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFG 120
Query: 160 SYGPIKRL 167
+GPIK L
Sbjct: 121 QFGPIKSL 128
Score = 83 (34.3 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 31/84 (36%), Positives = 37/84 (44%)
Query: 421 ERDR--HGER-DYDPTDQEDDRGWYDHH-ENYEHHRGYGDHDRYNQYHDDDNDRYDQMEE 476
+RDR G+R D D+E RG DH E R DR D DR D+
Sbjct: 269 DRDRGDRGDRSDRSDRDRERGRGDRDHRGSGGERERERDQRDRGGDRGGDRGDRSDRGRS 328
Query: 477 D-DYRYDRATSESRDKERTRDLDR 499
D R DR+ D+ER RD DR
Sbjct: 329 DRGDRGDRSDRGRDDRERGRD-DR 351
Score = 79 (32.9 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 32/90 (35%), Positives = 39/90 (43%)
Query: 419 KHERDRHGER-DYDPTDQE---DDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 474
+ +R G+R D D+E DDRG + RG D DR DD DR D+
Sbjct: 327 RSDRGDRGDRSDRGRDDRERGRDDRG----DRGRDDRRGGSDRDRDRGSRDDRGDRDDR- 381
Query: 475 EEDDYRYDRATSESRDK---ERTRDLDREY 501
D R DR RD ER RD R+Y
Sbjct: 382 -SDRGRDDRRGGSDRDHRIDERRRD-QRDY 409
Score = 74 (31.1 bits), Expect = 4.0e-40, Sum P(3) = 4.0e-40
Identities = 28/86 (32%), Positives = 39/86 (45%)
Query: 419 KHERDRHGERDYDPTDQED----DRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQ 473
+ +RDR G+R D D+ D DRG D + R G DR ++ DD D+
Sbjct: 306 RDQRDRGGDRGGDRGDRSDRGRSDRGDRGDRSDRGRDDRERGRDDRGDRGRDDRRGGSDR 365
Query: 474 MEEDDYRYDRATSESRDKERTRDLDR 499
+ R DR + R +R RD DR
Sbjct: 366 DRDRGSRDDRGDRDDRS-DRGRD-DR 389
Score = 71 (30.1 bits), Expect = 8.2e-40, Sum P(3) = 8.2e-40
Identities = 28/86 (32%), Positives = 38/86 (44%)
Query: 421 ERDRHG-----ERDYDPTDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQM 474
+RD G ER+ D D+ DRG D + + R GD + DD +R
Sbjct: 292 DRDHRGSGGERERERDQRDRGGDRGG-DRGDRSDRGRSDRGDRGDRSDRGRDDRERGRDD 350
Query: 475 EEDDYRYDRATSESRDKER-TRDLDR 499
D R DR RD++R +RD DR
Sbjct: 351 RGDRGRDDRRGGSDRDRDRGSRD-DR 375
Score = 60 (26.2 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 422 RDRHGERDYDPTDQ--EDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDY 479
RD G+RD D +D+ +D RG D + R D Y D D + + +
Sbjct: 372 RDDRGDRD-DRSDRGRDDRRGGSDRDHRIDERRR--DQRDYGSISDAHFDHFQYQPQQHH 428
Query: 480 RYDRATSESRDKERTRDLDREY 501
+ + ++ ++R+Y
Sbjct: 429 HHQQNHQSHHNQPHPERVNRDY 450
Score = 48 (22.0 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 483 RATSESRDKERTRDLDRE 500
R SESR+KE+ R+ ++E
Sbjct: 210 REMSESREKEKEREKEKE 227
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 245 (91.3 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 56/130 (43%), Positives = 76/130 (58%)
Query: 42 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L A LL LF PR PL Y PP PEKR P ++G+A+++ +A+ D Y P E E
Sbjct: 5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP-TESLE- 61
Query: 98 PVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
E+R R+ +DP +D +V GDPYKT+F++RLSY+T ES I+RE
Sbjct: 62 --EKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIERE 119
Query: 158 FESYGPIKRL 167
F YGPI+R+
Sbjct: 120 FTRYGPIERI 129
Score = 179 (68.1 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 33/61 (54%), Positives = 44/61 (72%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
E++R+V +K T K GYAF+ + RD+K AYK + G L+GRR++VDVERGRTV W P
Sbjct: 127 ERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVKGWLP 186
Query: 246 R 246
R
Sbjct: 187 R 187
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 244 (91.0 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 55/133 (41%), Positives = 76/133 (57%)
Query: 42 LTANLLKLFEPRAPLEYKPP------PEKRKCPPLTGMAQFVSHFAEPGD-PLYAPPVEK 94
L NLL LFE R P++Y PP + K P+TG+AQ++ F +P D P P V K
Sbjct: 5 LPPNLLALFEARPPVQYLPPCQDLLVDKNAKRAPMTGVAQYIQLFEDPKDTPAKIPVVTK 64
Query: 95 AETPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKI 154
AE E+R + ++P +P S DPY+TLFV R++YET+ESK+
Sbjct: 65 AEAKEEKRRQ----KDELLAYKVEQGIATWNPAENPRASEDPYRTLFVGRINYETSESKL 120
Query: 155 KREFESYGPIKRL 167
+REFE+YG IK+L
Sbjct: 121 RREFEAYGKIKKL 133
Score = 180 (68.4 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 35/61 (57%), Positives = 44/61 (72%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+K+ +V D E KPRGYAFIEY +M AYK+ADG K+DG+R++VD ERGRT W P
Sbjct: 131 KKLTMVHD-EAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYERGRTQKTWLP 189
Query: 246 R 246
R
Sbjct: 190 R 190
>ASPGD|ASPL0000006999 [details] [associations]
symbol:AN6903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
GO:GO:0030529 EMBL:AACD01000113 eggNOG:COG0724 KO:K11093
InterPro:IPR022023 Pfam:PF12220 OrthoDB:EOG4HMNKR
RefSeq:XP_664507.1 ProteinModelPortal:Q5AXS7 STRING:Q5AXS7
EnsemblFungi:CADANIAT00007705 GeneID:2870614 KEGG:ani:AN6903.2
HOGENOM:HOG000177264 OMA:GRGYTKA Uniprot:Q5AXS7
Length = 373
Score = 320 (117.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 85/211 (40%), Positives = 113/211 (53%)
Query: 46 LLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVER 101
LL LF+PR PL + P P+ K L+G+AQF+ + + P AET ++R
Sbjct: 9 LLALFQPRPPLRWVTPIDRAPDDIKKSKLSGVAQFLPEVKKTAEETEYNP---AETWLQR 65
Query: 102 RARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESY 161
+ R YDP++DP GDP+KTLFV+RLSYE TE ++REF +
Sbjct: 66 KLRQKAEKKEQLHKHLTEGLAAYDPNSDPQARGDPFKTLFVSRLSYEATEQDLEREFGRF 125
Query: 162 GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK------A 215
GPI+R+ R K + V K+ + RGYAFI Y +DMK A
Sbjct: 126 GPIERI-----------RIVK---DTVTPKGAKKPH--RGYAFIVYEREKDMKDLIHKLA 169
Query: 216 AYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
AYK+ DG ++ RRVLVDVERGRTV W+PR
Sbjct: 170 AYKETDGIRIKDRRVLVDVERGRTVKGWKPR 200
Score = 79 (32.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 25/64 (39%), Positives = 31/64 (48%)
Query: 438 DRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRD 496
DRG + E YGD DR ++ D D DR D+ + D YRY RD+ER R
Sbjct: 296 DRGGTGSNREPIRPRDSYGDRDRRDR--DRDGDRRDR-DRDSYRY-----RDRDRERERY 347
Query: 497 LDRE 500
RE
Sbjct: 348 GSRE 351
Score = 78 (32.5 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 481
RD +G+RD D++ DR D ++Y + + +RY D RY E+D Y
Sbjct: 310 RDSYGDRDRRDRDRDGDRRDRDR-DSYRYRDRDRERERYGSREDQGRKRYH--EDDSYDD 366
Query: 482 DRA 484
RA
Sbjct: 367 SRA 369
Score = 67 (28.6 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQ--YHDDDNDRYD 472
+RDR +RD D ++ DR Y + + YG + + YH+DD+ YD
Sbjct: 315 DRDRR-DRDRDGDRRDRDRDSYRYRDRDRERERYGSREDQGRKRYHEDDS--YD 365
>RGD|1307120 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1307120 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR022023 Pfam:PF12220 IPI:IPI00564444
ProteinModelPortal:D4ADS7 Ensembl:ENSRNOT00000051455
UCSC:RGD:1307120 ArrayExpress:D4ADS7 Uniprot:D4ADS7
Length = 187
Score = 286 (105.7 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 98 (39.6 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217
+++ +V K + KPRGYAFIEY H RDM Y
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHCEY 161
>UNIPROTKB|J9NZ89 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:AAEX03000805 ProteinModelPortal:J9NZ89
Ensembl:ENSCAFT00000045168 Uniprot:J9NZ89
Length = 166
Score = 286 (105.7 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 67/147 (45%), Positives = 82/147 (55%)
Query: 42 LTANLLKLFEPRAPLEYKPP----P-EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP P EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKP 183
EFE YGPIKR+ + S R GKP
Sbjct: 122 EFEVYGPIKRI-----HMVYSKRSGKP 143
Score = 94 (38.1 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQA 220
+++ +V K + KPRGYAFIEY H RDM + + A
Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSTTQLA 164
>RGD|1310724 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
Length = 244
Score = 133 (51.9 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 79 RLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPR 138
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 139 RLGGGLGGKKESGQL---RFGGRDR-PFRKP 165
Score = 107 (42.7 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
PN V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 41 PNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRL 80
Score = 79 (32.9 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDH--DRYNQYHDDDNDRYDQMEE 476
K+E R G+R+ + DR W +H RG H DR + ++D +R E
Sbjct: 172 KNEPHREGKRERRERSRSRDRHWDPRPRERDHDRGREKHWQDRARVWPENDWER-----E 226
Query: 477 DDYRYDRA-TSESRDKER 493
++R +RA T + RD+ +
Sbjct: 227 REFRDERAKTRDKRDRSK 244
>UNIPROTKB|Q5U1W5 [details] [associations]
symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
Uniprot:Q5U1W5
Length = 244
Score = 133 (51.9 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 79 RLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTLRGWIPR 138
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 139 RLGGGLGGKKESGQL---RFGGRDR-PFRKP 165
Score = 107 (42.7 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
PN V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 41 PNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRL 80
Score = 79 (32.9 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDH--DRYNQYHDDDNDRYDQMEE 476
K+E R G+R+ + DR W +H RG H DR + ++D +R E
Sbjct: 172 KNEPHREGKRERRERSRSRDRHWDPRPRERDHDRGREKHWQDRARVWPENDWER-----E 226
Query: 477 DDYRYDRA-TSESRDKER 493
++R +RA T + RD+ +
Sbjct: 227 REFRDERAKTRDKRDRSK 244
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 144 (55.7 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 39/102 (38%), Positives = 52/102 (50%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T + YAFIEY R +K A++ A+ LD +LVDVE+ RT+P WRPR
Sbjct: 78 RLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPR 137
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP-----SRSAEP 283
R+ GR++ P R P R AEP
Sbjct: 138 RLGGGQGGQKESGQL---RFGGRDR-PFRKPINLSTRRPAEP 175
Score = 101 (40.6 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
Y P+ V GDP TLFVARL+ +TTE K++ F +G I+RL
Sbjct: 38 YKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRL 79
Score = 48 (22.0 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGY 454
R R ER+ D D D R H E+ H Y
Sbjct: 176 RGRETERERDRRDYRDRRHERTHTEDRTHRHTY 208
>MGI|MGI:1923417 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
Genevestigator:Q9D384 Uniprot:Q9D384
Length = 244
Score = 134 (52.2 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 79 RLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTLRGWIPR 138
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 139 RLGGGLGGKKESGQL---RFGGRDR-PFRKP 165
Score = 108 (43.1 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
PN V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 41 PNKGVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRL 80
Score = 71 (30.1 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDH--DRYNQYHDDDNDRYDQMEE 476
K+E R G+R+ + DR W +H RG H +R + ++D +R E
Sbjct: 172 KNEPHREGKRERRERSRSRDRHWDPRPRERDHDRGREKHWQERARVWPENDWER-----E 226
Query: 477 DDYRYDRATS-ESRDKER 493
++R +R S + RD+ +
Sbjct: 227 REFREERVKSRDKRDRSK 244
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 136 (52.9 bits), Expect = 6.5e-18, Sum P(3) = 6.5e-18
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 79 RLRLVRDLVTGLSKGYAFIEYKEERSLIKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 139 RLGGGLGGKKESGQL---RFGGRDR-PFRKP 165
Score = 109 (43.4 bits), Expect = 6.5e-18, Sum P(3) = 6.5e-18
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
Y P+ V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 39 YTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRL 80
Score = 64 (27.6 bits), Expect = 6.5e-18, Sum P(3) = 6.5e-18
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY----DQM 474
K+++ R G+R+ + +R W + +H D +R ++ + + R D
Sbjct: 172 KNDQYREGKREKRERSRSRERHWDSRTRDRDH-----DRNREKRWQEREPSRVWLESDWE 226
Query: 475 EEDDYRYDRATS-ESRDKER 493
E D+R DRA E RD+ +
Sbjct: 227 RERDFRDDRAKGREKRDRSK 246
>UNIPROTKB|Q1LZH0 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
Length = 245
Score = 135 (52.6 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 79 RLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 139 RLGGGLGGKKESGQL---RFGGRDR-PFRKP 165
Score = 109 (43.4 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
Y P+ V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 39 YTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRL 80
Score = 60 (26.2 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 419 KHERDRHGERDYDPTDQEDDRGW----YDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 474
K+++ R G+R+ + +R W DHH+ R + + + + + D +R
Sbjct: 172 KNDQFREGKRERRERSRSRERHWDSRMRDHHDRGREKR-WQEREPARAWPEGDWER---- 226
Query: 475 EEDDYRYDRATS-ESRDKER 493
E D+R DR E RD+ +
Sbjct: 227 -ERDFRDDRVKGREKRDRSK 245
>UNIPROTKB|I3LN96 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
KEGG:ssc:100626152 Uniprot:I3LN96
Length = 246
Score = 136 (52.9 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 79 RLRLVRDLVTGFSKGYAFIEYKEERSLLKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 139 RLGGGLGGKKESGQL---RFGGRDR-PFRQP 165
Score = 109 (43.4 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
Y P+ V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 39 YTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRL 80
Score = 57 (25.1 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDN--DRYDQMEE 476
K+++ R G+R+ + +R W + H RG D+ Q + D E
Sbjct: 172 KNDQFREGKRERRERSRSRERHWDSRMRDRGHDRG---RDKRWQEREPARVWPEGDWERE 228
Query: 477 DDYRYDRATS-ESRDKER 493
D+R DR E RD+ +
Sbjct: 229 RDFRDDRVKGREKRDRSK 246
>UNIPROTKB|Q16560 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
Genevestigator:Q16560 Uniprot:Q16560
Length = 246
Score = 132 (51.5 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
++RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+ W PR
Sbjct: 79 RLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWIPR 138
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 139 RLGGGLGGKKESGQL---RFGGRDR-PFRKP 165
Score = 105 (42.0 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
PN V GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 41 PNKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRL 80
Score = 58 (25.5 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----YGDHDRYNQYHDDDNDRYDQM 474
K++ R G+R+ + +R W + +H RG + + + + D+D +R
Sbjct: 172 KNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWER---- 227
Query: 475 EEDDYRYDRATSESRDKER 493
E D+R DR + KER
Sbjct: 228 -ERDFRDDRIKGREK-KER 244
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 131 (51.2 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+ +RLV T RGY F+EY ++M AY+ A +DGR ++VD R + +P W P
Sbjct: 91 KNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIP 150
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSR 279
R R+ GR++ P R P R
Sbjct: 151 RRLGGGLGGRKESGQL---RFGGRDR-PFRAPLR 180
Score = 119 (46.9 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 23/44 (52%), Positives = 26/44 (59%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
YDP D GDPY TLFV RLS+ TTE ++ YG IK L
Sbjct: 50 YDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNL 93
Score = 48 (22.0 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
Identities = 16/74 (21%), Positives = 29/74 (39%)
Query: 433 TDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDR---ATSESR 489
+D+E++ +Y + E + + YH + + DR + ESR
Sbjct: 217 SDREEE--YYREKSSVEREEEFKERSSLRSYHSHRSSAHTHSSHRRRSKDREECSREESR 274
Query: 490 D--KERTRDLDREY 501
KER R ++ Y
Sbjct: 275 SDRKERARGMEDRY 288
Score = 43 (20.2 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 427 ERDYDPTDQEDDRGWYDH----HENYEHHRGYGDHDRYNQYHDDDNDRYDQME--EDDYR 480
ER+ + ++ R ++ H H + H R D + ++ + +DR ++ ED Y
Sbjct: 231 EREEEFKERSSLRSYHSHRSSAHTHSSHRRRSKDREECSR-EESRSDRKERARGMEDRYG 289
Query: 481 YDRA-TSESRDKERTRDLDR 499
++ S S+ +R+ + DR
Sbjct: 290 DNKGEVSGSKRSKRSEE-DR 308
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYG-DH 457
G + ++++ R + H ++ H R Y DH
Sbjct: 297 GSKRSKRSEEDRSRKRHKHLPSHHHRRSYSQDH 329
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 128 (50.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD---GRKLDGRRVLVDVERGRTVPN 242
EK+R+V DK T K +GYAFI + K A+K+ G ++ R +VD+ERGRTV
Sbjct: 134 EKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEIGVHRGIQIKDRICIVDIERGRTVKY 193
Query: 243 WRPR 246
++PR
Sbjct: 194 FKPR 197
Score = 123 (48.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 36/130 (27%), Positives = 63/130 (48%)
Query: 48 KLFEPRAPLEYKPPPE----KRKCPP-LTGMAQFVS----HFAEPGDPLYAPPVEKAETP 98
+LF+PR PL YK P + KR+ P +TG+A +S H+ E P
Sbjct: 14 RLFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYMEEF------PEGSPNNH 67
Query: 99 VERRARIHXXXXXXXXXXXXXXXXXYDPHNDPNVSG-DPYKTLFVARLSYETTESKIKRE 157
++R I ++P+ DP++ DPY+T+F+ RL Y+ E ++++
Sbjct: 68 LQRYEDIKLSKIKNAQLLDRRLQN-WNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKY 126
Query: 158 FESYGPIKRL 167
F +G I+++
Sbjct: 127 FVKFGEIEKI 136
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 105 (42.0 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 47 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 92
Score = 85 (35.0 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYRY R+ S + R+R R Y
Sbjct: 126 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRSPSPYYSRYRSRSRSRSY 175
Score = 62 (26.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 7 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 44
Score = 51 (23.0 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDR 470
G R D+ DRG YD +E+Y++ Y++Y R
Sbjct: 130 GRRRDSYYDRGYDRG-YDRYEDYDYRYRRSPSPYYSRYRSRSRSR 173
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 105 (42.0 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 47 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 92
Score = 76 (31.8 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 126 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 176
Score = 62 (26.9 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 7 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 44
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 104 (41.7 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A + A+G +LDGRR+ VD
Sbjct: 47 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVD 92
Score = 78 (32.5 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 501
G G R + Y+D DR YD+ EE DYRY R + S + R+R R Y
Sbjct: 127 GGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSRSRSY 177
Score = 62 (26.9 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 7 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 44
Score = 50 (22.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDR 470
G R D+ DRG YD +E Y++ +R Y++Y R
Sbjct: 131 GRRRDSYYDRGYDRG-YDRYEEYDYRYRRRSPSPYYSRYRSRSRSR 175
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 104 (41.7 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A + A+G +LDGRR+ VD
Sbjct: 150 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVD 195
Score = 78 (32.5 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 501
G G R + Y+D DR YD+ EE DYRY R + S + R+R R Y
Sbjct: 222 GGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSRSRSY 272
Score = 62 (26.9 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 110 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 147
Score = 50 (22.7 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDR 470
G R D+ DRG YD +E Y++ +R Y++Y R
Sbjct: 226 GRRRDSYYDRGYDRG-YDRYEEYDYRYRRRSPSPYYSRYRSRSRSR 270
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 105 (42.0 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 148 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Score = 76 (31.8 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 226 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 276
Score = 62 (26.9 bits), Expect = 6.5e-10, Sum P(3) = 6.5e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 145
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 105 (42.0 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 148 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Score = 76 (31.8 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 226 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 276
Score = 62 (26.9 bits), Expect = 6.9e-10, Sum P(3) = 6.9e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 145
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 105 (42.0 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 148 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Score = 76 (31.8 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 227 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 277
Score = 62 (26.9 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 145
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 105 (42.0 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 146 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
Score = 76 (31.8 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRAT-SESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYRY R + S + R+R R Y
Sbjct: 227 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSY 277
Score = 62 (26.9 bits), Expect = 7.1e-10, Sum P(3) = 7.1e-10
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 106 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 143
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 113 (44.8 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + H D K A ++A+G +LDGRR+ VD
Sbjct: 164 VNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRIRVD 209
Score = 67 (28.6 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 459 RYNQYHDDDNDR-YDQ-MEEDDYRYDRATSESR--DKERTRDLDREY 501
R + Y+D DR YD+ +E DYRY R S S + R+R R Y
Sbjct: 246 RRDSYYDRGYDRGYDRGYDEYDYRYSRRRSPSPYYSRYRSRSRSRSY 292
Score = 61 (26.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 125 DPHN--DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
D HN D + DP L V LS TTE ++ F YG +
Sbjct: 120 DSHNQGDARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSL 161
Score = 41 (19.5 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 441 WYDHHENYEHHRGYGDHD-RYNQ 462
+YD + + RGY ++D RY++
Sbjct: 250 YYDRGYDRGYDRGYDEYDYRYSR 272
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 105 (42.0 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 148 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
Score = 69 (29.3 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYR R+ S + R+R R Y
Sbjct: 226 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRR-RSPSPYYSRYRSRSRSRSY 274
Score = 62 (26.9 bits), Expect = 3.4e-09, Sum P(3) = 3.4e-09
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 108 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 145
Score = 51 (23.0 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDR 470
G R D+ DRG YD +E+Y++ R Y++Y R
Sbjct: 230 GRRRDSYYDRGYDRG-YDRYEDYDYRRR-SPSPYYSRYRSRSRSR 272
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 105 (42.0 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+ T + RG+AF+ + D K A ++A+G +LDGRR+ VD
Sbjct: 146 VNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
Score = 69 (29.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 453 GYGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSESRDKERTRDLDREY 501
G G R + Y+D DR YD+ E+ DYR R+ S + R+R R Y
Sbjct: 228 GGGGGRRRDSYYDRGYDRGYDRYEDYDYRR-RSPSPYYSRYRSRSRSRSY 276
Score = 62 (26.9 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGP+
Sbjct: 106 HTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPL 143
Score = 51 (23.0 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDR 470
G R D+ DRG YD +E+Y++ R Y++Y R
Sbjct: 232 GRRRDSYYDRGYDRG-YDRYEDYDYRRR-SPSPYYSRYRSRSRSR 274
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 97 (39.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 93 (37.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Score = 63 (27.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 103 (41.3 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Score = 50 (22.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 104 (41.7 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 27 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 71
Score = 47 (21.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 145 LSYETTESKIKREFESYGPI 164
+ YE TE ++K F GP+
Sbjct: 4 IPYEATEEQLKDIFSEVGPV 23
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 97 (39.2 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 50 (22.7 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHR----GYGDHDRYNQYHDDDNDRY 471
G+R Y + E G Y +Y R GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGDRSSGGSYRDS-YDSY 167
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 103 (41.3 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 239
KV ++ D+ET++ RG+ F+ + + D K A +G+++DGR + VD E G++
Sbjct: 51 KVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQVDGRMIRVD-EAGKS 102
Score = 70 (29.7 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
++ +++ + D K LF+ LSY+TTE ++ F YG I ++
Sbjct: 10 FNRNSEVIIMSDEGK-LFIGGLSYDTTEQSLEEAFSKYGTIAKV 52
Score = 45 (20.9 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 440 GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 475
G Y Y +R G +DR + D D Y E
Sbjct: 189 GGYSSGGGYRDNRNQGGYDRSGGSYRDGYDSYASHE 224
>UNIPROTKB|H7BXF3 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10781 ChiTaRS:TRA2B EMBL:AC009247
ProteinModelPortal:H7BXF3 PRIDE:H7BXF3 Ensembl:ENST00000259043
Uniprot:H7BXF3
Length = 127
Score = 104 (41.7 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 6 VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 51
Score = 46 (21.3 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 454 YGDHDRYNQYHDDDNDR-YDQMEEDDYRYDRATSE---SRDKERTRDLDREY 501
YG R Y+D DR YD + Y R + SR R+R R Y
Sbjct: 72 YGS-SRRRDYYDRGYDRGYDDRDYYSRSYRRRSPSPYYSRGGYRSRSRSRSY 122
Score = 46 (21.3 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 439 RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERT 494
R +YD Y+ RGY D D Y++ Y + Y Y R SR + R+
Sbjct: 78 RDYYDR--GYD--RGYDDRDYYSR-------SYRRRSPSPY-YSRGGYRSRSRSRS 121
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 112 (44.5 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ ERGR
Sbjct: 36 EVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 67 (28.6 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR--YDR 483
RDY P ++ Y H + + + RGYGD D Y + D D D YR Y+
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR----DRDYSDHPSGGSYRDSYE- 286
Query: 484 ATSESRDKERTR 495
+ SR TR
Sbjct: 287 SYGNSRSAPLTR 298
Score = 50 (22.7 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVL 38
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 99 (39.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDM-KAAYKQADGRKLDGRRVLVDVERGRT 239
E+ +L+ D+ET + +G+AFI Y T+D + A +A+G L GR++ V++ R T
Sbjct: 45 EEAKLIMDRETGRSKGFAFITY-GTQDAAQEAVSKANGIDLQGRKIRVNIARENT 98
Score = 50 (22.7 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V LSY+ T +++ F YG I+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIE 45
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 99 (39.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDM-KAAYKQADGRKLDGRRVLVDVERGRT 239
E+ +L+ D+ET + +G+AFI Y T+D + A +A+G L GR++ V++ R T
Sbjct: 45 EEAKLIMDRETGRSKGFAFITY-GTQDAAQEAVSKANGIDLQGRKIRVNIARENT 98
Score = 50 (22.7 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V LSY+ T +++ F YG I+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIE 45
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 97 (39.2 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSEN 88
Score = 58 (25.5 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHR---GYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
G+R Y + + G Y+ +Y + R GYGD Y D YD + ++++
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSRSQGGYGDRSSGGSYRDS----YDSYGKSWFKWE 174
Query: 483 R 483
R
Sbjct: 175 R 175
Score = 57 (25.1 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
L V LS++T E +++ F YG I ++
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVV 36
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 97 (39.2 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 50 (22.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHR----GYGDHDRYNQYHDDDNDRY 471
G+R Y + E G Y +Y R GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 107 (42.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+V L+ D+ETNK RG+AF+ + D KAA + +G+ LDG+ + V
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKV 81
Score = 64 (27.6 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 27/91 (29%), Positives = 34/91 (37%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D D + E+Y RG YG RY +Y D
Sbjct: 259 DRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDA 318
Query: 471 YDQMEEDDYR--YDRATSESRDKERTRDLDR 499
Y D Y Y R+ SR + R DR
Sbjct: 319 YSG-GRDSYSSSYGRSDRYSRGRHRVGRPDR 348
Score = 59 (25.8 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 21/68 (30%), Positives = 26/68 (38%)
Query: 422 RDRHGERDY-DPTDQEDDRGWYDHHENYEHH--------RGYGDHDRYNQYHDDDNDRYD 472
RD + RDY +P G Y H + Y H RGY D D Y D D D
Sbjct: 217 RDGYSSRDYREPRGFAPSPGEYTHRD-YGHSSVRDDCPLRGYSDRDGYG---GRDRDYGD 272
Query: 473 QMEEDDYR 480
+ +R
Sbjct: 273 HLSRGSHR 280
Score = 57 (25.1 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ EF YG I ++
Sbjct: 2 VEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVL 38
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 104 (41.7 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 139 VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 184
Score = 64 (27.6 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTES ++ F YGPI
Sbjct: 99 HVGNRANPDPNCCLGVFGLSLYTTESDLREVFSKYGPI 136
Score = 53 (23.7 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 211 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 266
Query: 487 ESRDKERT 494
SR + R+
Sbjct: 267 RSRSRSRS 274
Score = 46 (21.3 bits), Expect = 5.9e-07, Sum P(3) = 5.9e-07
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 439 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 492
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 211 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 266
Query: 493 RTRDLDREY 501
R+R R Y
Sbjct: 267 RSRSRSRSY 275
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 97 (39.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 44 (20.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 471
G+R Y E G Y D++ + GY D Y D D Y
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSY 167
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 106 (42.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 147 VSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANGMELDGRRIRVD 192
Score = 59 (25.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGPI
Sbjct: 107 HIGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPI 144
Score = 55 (24.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
RDY D+ DRG YD + Y +RG G D D++ + Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGGWRAVQDRDQFYRRRSPSPYYSRGGY 275
Query: 487 ESRDKERT 494
SR + R+
Sbjct: 276 RSRSRSRS 283
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 91 (37.1 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V +V D+ET + RG+ FI + + A + +G LDGR++ VD
Sbjct: 31 PISEVV-VVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVD 80
Score = 63 (27.2 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ T E ++ F S+GPI ++
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVV 36
Score = 48 (22.0 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR--YNQYHDDD-NDRYD 472
G++ Y + G Y + Y R YG + Y++Y + D YD
Sbjct: 106 GDQGYGNGRYDSRPGGYGYGYGYGRSRDYGSRSQGSYDRYSGGNYRDNYD 155
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 97 (39.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 44 (20.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 471
G+R Y E G Y D++ + GY D Y D D Y
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSY 167
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 97 (39.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 44 (20.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRG----YGDHDRYNQYHDDDNDRY 471
G+R Y + E G Y +Y R YGD Y D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGSYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 97 (39.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 44 (20.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 471
G+R Y E G Y D++ + GY D Y D D Y
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSY 167
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 97 (39.2 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSEN 88
Score = 57 (25.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
L V LS++T E +++ F YG I ++
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 48 (22.0 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 471
G+R Y + + G Y D++ + GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 92 (37.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 239
+V +V D+E+ + RG+ F+ + + D K A +G+ +DGR++ VD + G++
Sbjct: 34 EVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVD-QAGKS 85
Score = 66 (28.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ETTE +++ F YG + ++
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVV 36
Score = 46 (21.3 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 438 DRGWYDHHENYEHHRG-Y---GDHDRYNQYHDDDNDRYDQMEEDDY 479
DRG Y +E+ G Y G D Y + H DR D Y
Sbjct: 115 DRG-YGGSSRFENRSGGYQSSGSRDYYGRSHGSYGDRSGGSYRDSY 159
>FB|FBgn0003742 [details] [associations]
symbol:tra2 "transformer 2" species:7227 "Drosophila
melanogaster" [GO:0007530 "sex determination" evidence=NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006397 "mRNA
processing" evidence=NAS;IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0030237 "female sex determination" evidence=IMP]
[GO:0036002 "pre-mRNA binding" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP;IDA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0007283
"spermatogenesis" evidence=NAS] [GO:0019102 "male somatic sex
determination" evidence=TAS] [GO:0019101 "female somatic sex
determination" evidence=NAS;TAS] [GO:0000245 "spliceosomal complex
assembly" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0030154 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0007548
GO:GO:0019102 GO:GO:0071011 GO:GO:0000245 GO:GO:0000381
GeneTree:ENSGT00700000104309 GO:GO:0019101 KO:K12897
eggNOG:NOG297815 EMBL:M23633 EMBL:X57484 EMBL:M30939 EMBL:M76381
EMBL:AY058768 EMBL:J03155 PIR:A32373 PIR:D35846 PIR:S12003
RefSeq:NP_476763.1 RefSeq:NP_476764.1 RefSeq:NP_476765.1
RefSeq:NP_476766.1 RefSeq:NP_599107.1 RefSeq:NP_995834.1
RefSeq:NP_995835.1 UniGene:Dm.4216 ProteinModelPortal:P19018
SMR:P19018 DIP:DIP-17430N IntAct:P19018 MINT:MINT-277223
STRING:P19018 PaxDb:P19018 PRIDE:P19018 EnsemblMetazoa:FBtr0089617
EnsemblMetazoa:FBtr0089620 EnsemblMetazoa:FBtr0089621 GeneID:36619
KEGG:dme:Dmel_CG10128 CTD:36619 FlyBase:FBgn0003742
InParanoid:P19018 OMA:KDACTGM OrthoDB:EOG4TQJSF PhylomeDB:P19018
GenomeRNAi:36619 NextBio:799520 Bgee:P19018 GermOnline:CG10128
Uniprot:P19018
Length = 264
Score = 99 (39.9 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
E++++V D +T + RG+ FI + D +AA G ++DGRR+ VD
Sbjct: 124 ERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVD 171
Score = 63 (27.2 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 450 HHRGYGDHDRYNQYHDDDNDRYDQ---MEEDDYRYDRATSESRDK 491
H R +D Y +D NDRYD+ RY R S SR +
Sbjct: 209 HDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYSRSR 253
Score = 60 (26.2 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 457 HDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER-TRDLDREY 501
HDR +D+ DRYD + RYDR S + R TR+ R Y
Sbjct: 209 HDRSASPYDNYRDRYDYRND---RYDRNLRRSPSRNRYTRN--RSY 249
Score = 55 (24.4 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 145 LSYETTESKIKREFESYGPIKRL 167
L+ T++ K++ F YGPI+R+
Sbjct: 104 LNTNTSQHKVRELFNKYGPIERI 126
Score = 48 (22.0 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 427 ERDYDPTDQEDDRGWYDH-HENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEEDDYRY 481
+R P D DR YD+ ++ Y+ + R +RY + R Q+ RY
Sbjct: 210 DRSASPYDNYRDR--YDYRNDRYDRNLRRSPSRNRYTRNRSYSRSRSPQLRRTSSRY 264
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 105 (42.0 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 69 (29.3 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 25/89 (28%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R DR
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQDR 347
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
Score = 50 (22.7 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 97 (39.2 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSEN 88
Score = 57 (25.1 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
L V LS++T E +++ F YG I ++
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 48 (22.0 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRY 471
G+R Y + + G Y D++ + GYGD Y D D Y
Sbjct: 119 GDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDS-YDSY 167
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 105 (42.0 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 38 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 97
Query: 241 PNWRPR 246
P PR
Sbjct: 98 PPPPPR 103
Score = 62 (26.9 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 246 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 285
Score = 58 (25.5 bits), Expect = 8.8e-07, Sum P(3) = 8.8e-07
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
RDY P ++ Y H + + + RGY D D Y + D D D YR
Sbjct: 234 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR----DRDYSDHPSGGSYR 284
Score = 50 (22.7 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 4 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 40
Score = 45 (20.9 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENY 448
+RD +G RD D +D + D +E+Y
Sbjct: 264 DRDGYG-RDRDYSDHPSGGSYRDSYESY 290
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 122 (48.0 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 32/91 (35%), Positives = 43/91 (47%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246
K+RLV D T +GYAFIEY R + A++ A+ +D V VD E RT+ W PR
Sbjct: 84 KIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANRLVIDQHEVFVDFELERTLKGWIPR 143
Query: 247 XXXXXXXXXXXXXXXXNQRYSGREQEPSRGP 277
R+ GR++ P R P
Sbjct: 144 RLGGGFGGKKESGQL---RFGGRDR-PFRKP 170
Score = 113 (44.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 130 PN--VSGDPYKTLFVARLSYETTESKIKREFESYGPIK--RLICNSCNG---GDSSRDGK 182
PN V+GDP+ TLFVARL+ +TTE K+K F YG I+ RL+ + G G + + K
Sbjct: 46 PNKGVTGDPHLTLFVARLNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYK 105
Query: 183 PCDEKVRLVTDKETNK---PRGYAFIEYMHTRDMKAAYKQADGRKLDGRR 229
+E+ L ++ N+ + F+++ R +K + G G++
Sbjct: 106 --EERALLKAHRDANRLVIDQHEVFVDFELERTLKGWIPRRLGGGFGGKK 153
Score = 55 (24.4 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR 459
K R G RD+ D+E +R E G+GD +R
Sbjct: 188 KRNWSREGTRDWRTRDREHERSREKRGPERERSWGWGDSER 228
Score = 49 (22.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 422 RDRHGERDYDPTDQEDDR--GWYDHHENYEHHRGYG----DHDR 459
RDR ER + E +R GW D + + R G D DR
Sbjct: 202 RDREHERSREKRGPERERSWGWGDSERDSKEERSRGRERKDRDR 245
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 105 (42.0 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 62 (26.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
Score = 58 (25.5 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
RDY P ++ Y H + + + RGY D D Y + D D D YR
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR----DRDYSDHPSGGSYR 282
Score = 50 (22.7 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
Score = 45 (20.9 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENY 448
+RD +G RD D +D + D +E+Y
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESY 288
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 104 (41.7 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
++ L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 68 (29.0 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR--YDR 483
RDY P ++ Y H + + + RGYGD D Y + D D D YR Y+
Sbjct: 229 RDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGR----DRDYSDHPSGGSYRDSYE- 283
Query: 484 ATSESRDKERTR 495
+ SR TR
Sbjct: 284 SYGNSRSAPPTR 295
Score = 51 (23.0 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIL 38
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 104 (41.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 147 VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGPI
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPI 144
Score = 53 (23.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 487 ESRDKERT 494
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 439 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 492
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 493 RTRDLDREY 501
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 104 (41.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 147 VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGPI
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPI 144
Score = 53 (23.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 487 ESRDKERT 494
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 439 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 492
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 493 RTRDLDREY 501
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 104 (41.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 147 VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGPI
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPI 144
Score = 53 (23.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 487 ESRDKERT 494
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 439 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 492
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 493 RTRDLDREY 501
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 104 (41.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 147 VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGPI
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPI 144
Score = 53 (23.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 487 ESRDKERT 494
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 439 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 492
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 493 RTRDLDREY 501
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 104 (41.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V +V D+++ + RG+AF+ + + D K A ++A+G +LDGRR+ VD
Sbjct: 147 VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
H + DP L V LS TTE ++ F YGPI
Sbjct: 107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPI 144
Score = 53 (23.7 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATS 486
RDY D+ DRG YD + Y +RG G + D + Y + Y Y R
Sbjct: 219 RDY--YDRGYDRG-YDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPY-YSRGGY 274
Query: 487 ESRDKERT 494
SR + R+
Sbjct: 275 RSRSRSRS 282
Score = 46 (21.3 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 439 RGWYDHHENYEHHRGYGDHDRYNQYH---DDDNDRYDQMEEDDYRYDRATSE---SRDKE 492
R +YD Y+ RGY D D Y++ + + ++ D Y R + SR
Sbjct: 219 RDYYDR--GYD--RGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGY 274
Query: 493 RTRDLDREY 501
R+R R Y
Sbjct: 275 RSRSRSRSY 283
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 105 (42.0 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 62 (26.9 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 243 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 282
Score = 58 (25.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
RDY P ++ Y H + + + RGY D D Y + D D D YR
Sbjct: 231 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR----DRDYSDHPSGGSYR 281
Score = 50 (22.7 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
Score = 45 (20.9 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENY 448
+RD +G RD D +D + D +E+Y
Sbjct: 261 DRDGYG-RDRDYSDHPSGGSYRDSYESY 287
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 103 (41.3 bits), Expect = 4.8e-07, Sum P(4) = 4.8e-07
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Score = 64 (27.6 bits), Expect = 4.8e-07, Sum P(4) = 4.8e-07
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 418 SKHERDRHGE-RDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDD 466
S +RD +G RD D +D + D +E+Y + R YG RY+ Y
Sbjct: 252 SYSDRDGYGGGRDRDYSDHPSGGSYRDSYESYGNSRSAPPARGPPPSYGGSSRYDDY-GS 310
Query: 467 DNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
D Y E Y R+ S ++R DR
Sbjct: 311 TRDGYGSRES--YSSSRSDVYSSGRDRVGRQDR 341
Score = 50 (22.7 bits), Expect = 4.8e-07, Sum P(4) = 4.8e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
Score = 37 (18.1 bits), Expect = 4.8e-07, Sum P(4) = 4.8e-07
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 267 SGREQEPSRGPSRSA 281
S R++ PSRG S S+
Sbjct: 238 SSRDEYPSRGYSLSS 252
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 97 (39.2 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 47 (21.6 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 15/59 (25%), Positives = 22/59 (37%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
G+R Y E G Y D++ + GY D Y D D Y+ + + R
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSYEAGQRAEAR 176
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 86 (35.3 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ ++V D+ T + RG+ F+E ++ +AA +G+++DGR ++V+ R
Sbjct: 30 KSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNEAR 80
Score = 56 (24.8 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
L+V L+Y ++ ++R F +YG +K
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVK 30
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 97 (39.2 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 62 (26.9 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVV 36
Score = 41 (19.5 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 13/47 (27%), Positives = 15/47 (31%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYD 472
G+R Y E G Y +Y R G Y D YD
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGGSYRDSYD 165
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 97 (39.2 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 62 (26.9 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVV 36
Score = 41 (19.5 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 13/47 (27%), Positives = 15/47 (31%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYD 472
G+R Y E G Y +Y R G Y D YD
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGGSYRDSYD 165
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 97 (39.2 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 62 (26.9 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVV 36
Score = 41 (19.5 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 13/47 (27%), Positives = 15/47 (31%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYD 472
G+R Y E G Y +Y R G Y D YD
Sbjct: 119 GDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGYRSSGGSYRDSYD 165
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 109 (43.4 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+V L+ D+ETNK RG+AFI + D KAA + +G+ LDG+ + V
Sbjct: 36 EVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKV 81
Score = 58 (25.5 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 25/90 (27%), Positives = 33/90 (36%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHD-RYNQYHDDDND 469
+RD +G RD D D + D E+Y R YG RY +Y D
Sbjct: 262 DRDGYGGRDRDYADHPSGGSYRDPFESYGDPRSAAPARGPPPSYGGGGGRYEEYRGCSPD 321
Query: 470 RYDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R DR
Sbjct: 322 AYGG-GRDGYAGGRSERYSGGRDRVGRADR 350
Score = 54 (24.1 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVL 38
Score = 49 (22.3 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEH--HRGYGDHDRYN----QYHDDDNDRYDQMEEDDYRY 481
RD+ P+ +E Y H + RGYGD D Y Y D + + + Y
Sbjct: 232 RDFAPSPREYTYRDYGHSSARDECPSRGYGDRDGYGGRDRDYADHPSGGSYRDPFESYGD 291
Query: 482 DRATSESR 489
R+ + +R
Sbjct: 292 PRSAAPAR 299
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 105 (42.0 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 65 (27.9 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 261 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 318
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 319 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 346
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 243 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 282
Score = 50 (22.7 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 105 (42.0 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 65 (27.9 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
Score = 50 (22.7 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 105 (42.0 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 65 (27.9 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
Score = 50 (22.7 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 105 (42.0 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 65 (27.9 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
Score = 50 (22.7 bits), Expect = 7.4e-07, Sum P(3) = 7.4e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 105 (42.0 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+ E GR
Sbjct: 37 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRG 96
Query: 241 PNWRPR 246
P PR
Sbjct: 97 PPPPPR 102
Score = 65 (27.9 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 263 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 320
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 321 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 348
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 245 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 284
Score = 50 (22.7 bits), Expect = 7.5e-07, Sum P(3) = 7.5e-07
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 3 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 39
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 91 (37.1 bits), Expect = 8.7e-07, Sum P(3) = 8.7e-07
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V +V D+ET + RG+ FI + + A + +G LDGR++ VD
Sbjct: 31 PISEVV-VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVD 80
Score = 63 (27.2 bits), Expect = 8.7e-07, Sum P(3) = 8.7e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ T E ++ F S+GPI ++
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVV 36
Score = 40 (19.1 bits), Expect = 8.7e-07, Sum P(3) = 8.7e-07
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 426 GERDYDPTDQEDDR--GW-YDHHENYEHHRGYGDHDRYN--QYHDD-DN 468
G++ Y + + D R G+ Y + + ++ G +DRY+ Y D+ DN
Sbjct: 106 GDQGYG-SGRYDSRPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDNYDN 153
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 96 (38.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 239
++V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++
Sbjct: 33 QEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVD-QAGKS 85
Score = 58 (25.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E ++ F YG I+ ++
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVV 36
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 440 GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY 471
GW + + YGD + + D D Y
Sbjct: 132 GWIPDYYSSGRESSYGDRSAGGRSYRDSYDSY 163
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 88 (36.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+V L+ D+ETNK RG+AF+ + D K A + +G+ + + + R+ W P
Sbjct: 38 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKGVPSSTRFLQQFKPRSTKRWWP 96
Score = 50 (22.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 4 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 40
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 103 (41.3 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Score = 65 (27.9 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 25/90 (27%), Positives = 37/90 (41%)
Query: 421 ERDRHG-ERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDND 469
+RD +G ERDY +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYGRERDY--SDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRD 318
Query: 470 RYDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 319 GYGG-SRDSYTSSRSDLYSSGRDRVGRQER 347
Score = 63 (27.2 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRERDYSDHPSGGSYRD 283
Score = 50 (22.7 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 103 (41.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V L+ D+ETNK RG+AF+ + D K A + +G+ LDG+ + V+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVE 82
Score = 65 (27.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD D +D + D +E+Y + R YG RY+ Y D
Sbjct: 262 DRDGYG-RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 319
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 320 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 347
Score = 62 (26.9 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 244 RDYGHSSSRDDYPSRGYSDR-DGYGRDRDYSDHPSGGSYRD 283
Score = 50 (22.7 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>DICTYBASE|DDB_G0292710 [details] [associations]
symbol:DDB_G0292710 "peptidylprolyl isomerase"
species:44689 "Dictyostelium discoideum" [GO:0006457 "protein
folding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0292710 GO:GO:0006457
GO:GO:0000166 EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
KO:K12735 OMA:DRTQNRS RefSeq:XP_629577.1 ProteinModelPortal:Q54CU3
STRING:Q54CU3 EnsemblProtists:DDB0215524 GeneID:8628838
KEGG:ddi:DDB_G0292710 InParanoid:Q54CU3 ProtClustDB:CLSZ2846584
Uniprot:Q54CU3
Length = 489
Score = 104 (41.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 26/65 (40%), Positives = 33/65 (50%)
Query: 419 KHERDRHGERD---YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 475
+ ERDR +RD Y D+E DR Y + Y Y D DRY+ D DN+R E
Sbjct: 429 ERERDRERDRDRDRYSDRDRERDRDRYSDRDRYRDRDRYSDRDRYS---DRDNER--NRE 483
Query: 476 EDDYR 480
+D YR
Sbjct: 484 KDRYR 488
Score = 100 (40.3 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 422 RDR-HGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQY-HDDDNDRYDQMEE--D 477
+DR H +R+Y+ + D+R D E + R D DRY+ + D DRY + D
Sbjct: 406 KDRNHHDRNYNRSYDRDNRNKDDERER-DRERDR-DRDRYSDRDRERDRDRYSDRDRYRD 463
Query: 478 DYRY-DRATSESRDKERTRDLDR 499
RY DR RD ER R+ DR
Sbjct: 464 RDRYSDRDRYSDRDNERNREKDR 486
Score = 93 (37.8 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYD-HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
K R+R + + E D + D +H + ++R Y DR N+ DD+ +R + + D
Sbjct: 383 KDSRERDMKSSSSSSSSESDNRYKDRNHHDRNYNRSY---DRDNRNKDDERERDRERDRD 439
Query: 478 DYRYDRATSESRDKERTRDLDR 499
RY E RD++R D DR
Sbjct: 440 RDRYSDRDRE-RDRDRYSDRDR 460
Score = 91 (37.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDY 479
++ + E+D D + E+ ++ HDR YN+ +D DN D E D
Sbjct: 376 KKQKSNEKDSRERDMKSSSS-SSSSESDNRYKDRNHHDRNYNRSYDRDNRNKDDERERDR 434
Query: 480 RYDRATSESRDKERTRDLDR 499
DR D++R RD DR
Sbjct: 435 ERDRDRDRYSDRDRERDRDR 454
Score = 78 (32.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V DK TN YAF+EY + + AY + + +D RR+ VD
Sbjct: 274 VVRDKVTNDSLCYAFVEYSTKEECEKAYLKLENILIDERRIHVD 317
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 88 (36.0 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 25/88 (28%), Positives = 38/88 (43%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
P E V +V D+ET + RG+ FI + + + +G LDGR++ VD G++
Sbjct: 31 PISEVV-VVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVD-HAGKSARG 88
Query: 243 WRPRXXXXXXXXXXXXXXXXNQRY-SGR 269
R +Q Y SGR
Sbjct: 89 TRGGAFGAHGRGRSYSRGGGDQGYGSGR 116
Score = 63 (27.2 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ T E ++ F S+GPI ++
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVV 36
Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 426 GERDYDPTDQEDDR--GW-YDHHENYEHHRGYGDHDRYN--QYHDD-DN 468
G++ Y + + D R G+ Y + + ++ G +DRY+ Y D+ DN
Sbjct: 108 GDQGYG-SGRYDSRPGGYGYGYGRSRDYSGSQGGYDRYSGGNYRDNYDN 155
>UNIPROTKB|B7ZMD9 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
Length = 459
Score = 86 (35.3 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G+ L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 61 (26.5 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 61 (26.5 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEED 477
++ R R+Y P + Y H +E + RGY HD Y + D+ + +
Sbjct: 294 RNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEH--LSGS 351
Query: 478 DYR 480
YR
Sbjct: 352 SYR 354
Score = 60 (26.2 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|J3KPK3 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
Ensembl:ENST00000382658 Uniprot:J3KPK3
Length = 459
Score = 86 (35.3 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G+ L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 61 (26.5 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 61 (26.5 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEED 477
++ R R+Y P + Y H +E + RGY HD Y + D+ + +
Sbjct: 294 RNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEH--LSGS 351
Query: 478 DYR 480
YR
Sbjct: 352 SYR 354
Score = 60 (26.2 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 97 (39.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 97 (39.2 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 40 (19.1 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 426 GERDYDPTDQEDDRGWYDHHENYEHHRGYGD-HDRYNQ-YHDDDNDRY 471
G+R Y + E G Y +Y R G +DR + + D D Y
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYDRSSGGSYRDSYDSY 166
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 99 (39.9 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD--VERGRTVP 241
V +V D+++ + RG+A + + + D K A ++A+G +LDGRR+ VD + +G P
Sbjct: 152 VCIVYDQQSRRSRGFALVYFENREDSKEAKERANGMELDGRRIRVDYSITKGPHTP 207
Score = 59 (25.8 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 127 HNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLIC 169
H + DP L V LS TTE ++ F YGP+ +C
Sbjct: 112 HIGDRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPLSD-VC 153
Score = 48 (22.0 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 459 RYNQYHDDDNDR-YDQMEEDDYRYDRATSES----RDKERTRDLDREY 501
R +D +R YD E+ DY +R S S R R+R R Y
Sbjct: 226 RRRDSYDRGYERGYDSYEDRDYHNNRRRSPSPYYSRGPYRSRSRSRSY 273
>UNIPROTKB|A6NDE4 [details] [associations]
symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
family 1 member B" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
Genevestigator:A6NDE4 Uniprot:A6NDE4
Length = 496
Score = 86 (35.3 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G+ L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 425 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 483 RATSESRDKERTRDL 497
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 425 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 483 RATSESRD 490
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 60 (26.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|A6NEQ0 [details] [associations]
symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
Genevestigator:A6NEQ0 Uniprot:A6NEQ0
Length = 496
Score = 86 (35.3 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G+ L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 425 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 483 RATSESRDKERTRDL 497
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 425 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 483 RATSESRD 490
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 60 (26.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|P0C7P1 [details] [associations]
symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
family 1 member D" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
Length = 496
Score = 86 (35.3 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G+ L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 425 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 483 RATSESRDKERTRDL 497
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 425 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 483 RATSESRD 490
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 60 (26.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|P0DJD3 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
Uniprot:P0DJD3
Length = 496
Score = 86 (35.3 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G+ L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 425 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 483 RATSESRDKERTRDL 497
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 425 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 483 RATSESRD 490
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 60 (26.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|P0DJD4 [details] [associations]
symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
family 1 member C" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
Uniprot:P0DJD4
Length = 496
Score = 86 (35.3 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G+ L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81
Score = 73 (30.8 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETRE 304
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 425 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 483 RATSESRDKERTRDL 497
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 62 (26.9 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 425 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
H RDY + D+ RG+ + + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNRRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 483 RATSESRD 490
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 61 (26.5 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 60 (26.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 100 (40.3 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
++ L+ D+ETNK RG+AF+ + D K + +G+ LDG+ + V+ E GR
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 61 (26.5 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 241 RDYSHSSSRDDYPSRGYGDR-DGYGRDREYSDHPSGGSYRD 280
Score = 61 (26.5 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEHH--RGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
RDY P ++ Y H + + + RGYGD D Y + D + D YR
Sbjct: 229 RDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGR----DREYSDHPSGGSYR 279
Score = 60 (26.2 bits), Expect = 6.7e-06, Sum P(3) = 6.7e-06
Identities = 24/97 (24%), Positives = 39/97 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHH------RG----YGDHDRYNQY------H 464
+RD +G RD + +D + D +E+Y + RG YG RY+ Y +
Sbjct: 259 DRDGYG-RDREYSDHPSGGSYRDSYESYGNSCSAPPTRGPPPSYGGSSRYDDYSSSRDGY 317
Query: 465 DDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDREY 501
D Y D Y DR +++ ++R Y
Sbjct: 318 GGSRDSYSSSRSDLYSSDRDRVGRQERGLPPSMERGY 354
Score = 51 (23.0 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIL 38
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 100 (40.3 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD------VERGRTV 240
++ L+ D+ETNK RG+AF+ + D K + +G+ LDG+ + V+ E GR
Sbjct: 36 EILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Query: 241 PNWRPR 246
P PR
Sbjct: 96 PPPPPR 101
Score = 61 (26.5 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 428 RDYDPTDQEDD---RGWYDHHENYEHHRGYGDHDRYNQYHD 465
RDY + DD RG+ D + Y R Y DH Y D
Sbjct: 241 RDYSHSSSRDDYPSRGYGDR-DGYGRDREYSDHPSGGSYRD 280
Score = 61 (26.5 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 23/89 (25%), Positives = 36/89 (40%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDNDR 470
+RD +G RD + +D + D +E+Y + R YG RY+ Y D
Sbjct: 259 DRDGYG-RDREYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDY-SSSRDG 316
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R+ S ++R +R
Sbjct: 317 YGG-SRDSYSSSRSDLYSSGRDRVGRQER 344
Score = 51 (23.0 bits), Expect = 5.3e-06, Sum P(3) = 5.3e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIL 38
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 80 (33.2 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V +V D ET + +G+ FI + + A + +G LDGR++ VD
Sbjct: 34 EVVVVKDWETRRSQGFGFITFTNPEHASNAMRATNGESLDGRQIHVD 80
Score = 59 (25.8 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ T E ++ F S+GPI ++
Sbjct: 8 LFVGGLNFNTYEQALEDHFSSFGPIFEVV 36
Score = 55 (24.4 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 420 HERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGD----HDRYNQYHDDDN-DRY 471
+ R R G + Y + + G Y + Y R YG +DRY+ + DN DRY
Sbjct: 101 YSRGR-GHQSYGSSRYDSLPGGYGYGYGYGRSRDYGSSQGSYDRYSGGNYRDNYDRY 156
>UNIPROTKB|J3KQ82 [details] [associations]
symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
Ensembl:ENST00000454978 Uniprot:J3KQ82
Length = 459
Score = 83 (34.3 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGTSLHGKAIKVE 81
Score = 74 (31.1 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETRE 304
Score = 64 (27.6 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 425 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
H RDY + D+ RG+ +H + E R Y R + Y D + R + Y Y
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNHRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYSYH 333
Query: 483 RATSESRDKERTRDL 497
E+ ++ + L
Sbjct: 334 DGYGEALGRDHSEHL 348
Score = 61 (26.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 61 (26.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHH-RGYGDHDRYNQYHDDDNDRYDQMEED 477
++ R R+Y P + Y H +E + RGY HD Y + D+ + +
Sbjct: 294 RNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEH--LSGS 351
Query: 478 DYR 480
YR
Sbjct: 352 SYR 354
Score = 60 (26.2 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|Q15415 [details] [associations]
symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
Uniprot:Q15415
Length = 496
Score = 83 (34.3 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V L+ D+ T+K RG+AFI + + D K A K +G L G+ + V+
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGTSLHGKAIKVE 81
Score = 74 (31.1 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
D+ RG+ +H + E R Y R + Y D + R D+ YR R++ E+R+
Sbjct: 249 DEHSSRGYRNHRSSRET-RDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSRETRE 304
Score = 70 (29.7 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 425 HGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
H RDY + D+ RG+ +H + E R Y R + Y D + R + YR
Sbjct: 275 HAYRDYGHSRRDESYSRGYRNHRSSRET-REYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
Query: 483 RATSESRD 490
++ E+RD
Sbjct: 334 PSSRETRD 341
Score = 69 (29.3 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 425 HGERDYDPTDQEDD--RGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
HG RDY + + + RG Y +H + R Y R Y D + +D+ Y Y
Sbjct: 312 HGYRDYGHSRRHESYSRG-YRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYH 370
Query: 483 RATSESRDKERTRDL 497
E+ ++ + L
Sbjct: 371 DGYGEALGRDHSEHL 385
Score = 61 (26.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRD 490
+H + + R Y R Y D+ + D+ YR R++ E+RD
Sbjct: 221 NHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRD 267
Score = 60 (26.2 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 103 (41.3 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V L+ D+ETNK RG+AF+ + D K A ++ +G+ LDG+ + V+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVE 82
Score = 59 (25.8 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 24/90 (26%), Positives = 35/90 (38%)
Query: 421 ERDRHGERDY-DPTDQEDDRGWYDHHENYEHHRG----------YGDHDRYNQYHDDDND 469
+RD +G RD D +D + + D +E Y + R YG RY+ Y D
Sbjct: 240 DRDGYGGRDSRDYSDHQSGGSYRDSYEGYGNSRSAPPARGPPPSYGGSSRYDDY-SSTRD 298
Query: 470 RYDQMEEDDYRYDRATSESRDKERTRDLDR 499
Y D Y R S ++R +R
Sbjct: 299 GYGG--RDSYSSSRNDIYSSGRDRVGRQER 326
Score = 55 (24.4 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 17/72 (23%), Positives = 24/72 (33%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
K D + RDY + D G +Y + D Y D D Y + D
Sbjct: 192 KDRYDGYSGRDYGSSRDSRDYGPPPRDYSYRDYGHSSSRDDYGSRGYSDRDGYGGRDSRD 251
Query: 479 YRYDRATSESRD 490
Y ++ RD
Sbjct: 252 YSDHQSGGSYRD 263
Score = 52 (23.4 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 422 RDRHGERDYDPTDQ---EDDRGWYDHHE--NY-EHHRGYGD 456
RD +G R Y D D R + DH +Y + + GYG+
Sbjct: 230 RDDYGSRGYSDRDGYGGRDSRDYSDHQSGGSYRDSYEGYGN 270
Score = 49 (22.3 bits), Expect = 7.5e-05, Sum P(3) = 7.5e-05
Identities = 20/55 (36%), Positives = 23/55 (41%)
Query: 453 GYGDHDRYNQYHDDD----NDRYDQMEED-DYRY-DRATSESRDKERTRDL-DRE 500
GY DRY+ Y D D D DY Y D S SRD +R DR+
Sbjct: 188 GYSGKDRYDGYSGRDYGSSRDSRDYGPPPRDYSYRDYGHSSSRDDYGSRGYSDRD 242
Score = 47 (21.6 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG + ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVL 38
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 97 (39.2 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 97 (39.2 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++ N
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD-QAGKSSDN 88
Score = 63 (27.2 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 45 (20.9 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
G+R Y E G Y D++ + GY D Y D D Y + +
Sbjct: 119 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSYGKSHSE 173
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 94 (38.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
P E V +V D+ET + RG+ FI + + A + +G LDGR++ VD G++
Sbjct: 31 PISEVV-VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVD-HAGKSARG 88
Query: 243 WRPRXXXXXXXXXXXXXXXXNQRY-SGREQEPSRG 276
R +Q Y SGR + G
Sbjct: 89 TRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
Score = 63 (27.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ T E ++ F S+GPI ++
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVV 36
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 80 (33.2 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 225
+V L+ D+ETNK RG+AF+ + D K A + +G+ +
Sbjct: 38 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKMM 76
Score = 50 (22.7 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 4 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 40
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 94 (38.1 bits), Expect = 8.8e-06, Sum P(3) = 8.8e-06
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 238
V + ++ETN+ RG+ F+ + + D K A + +G+ +DGR + VD E G+
Sbjct: 34 VHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSVDGRTIRVD-EAGK 83
Score = 60 (26.2 bits), Expect = 8.8e-06, Sum P(3) = 8.8e-06
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 140 LFVARLSYETTESKIKREFESYGPI 164
LF+ LS++TTE ++ F YG I
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVI 31
Score = 38 (18.4 bits), Expect = 8.8e-06, Sum P(3) = 8.8e-06
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 448 YEHHRGYGDHDRYNQYHD 465
Y RG G DR + Y D
Sbjct: 159 YNRDRGSGYGDRSSSYKD 176
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 78 (32.5 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 184 CDEKVRLVT--DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237
C E RLV D+ P G+ F+EY +D K G KLD R + D++ G
Sbjct: 71 CGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDAIDCMKYIGGTKLDERVIRTDLDPG 126
Score = 73 (30.8 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
P DP + TL+V LS+ TTE ++ F G IKRL+
Sbjct: 39 PQEDPLANST---TLYVGNLSFYTTEEQVYELFSKCGEIKRLV 78
Score = 46 (21.3 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 443 DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 500
D +E R YG Q D+ + YD+ R + E+R +E+ D E
Sbjct: 122 DLDPGFEEGRQYGRGKSGGQVRDEYREDYDEGRGGLGRAIQMEREARAREQRDSRDEE 179
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 70 (29.7 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL 225
P E V L+ D+ T+K RG+AFI + + D K A K +G+ +
Sbjct: 33 PISE-VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKMM 73
Score = 60 (26.2 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E +K F +GPI ++
Sbjct: 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL 38
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 94 (38.1 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD G
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGG 84
Score = 63 (27.2 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 45 (20.9 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 14/56 (25%), Positives = 20/56 (35%)
Query: 426 GERDYDPTDQEDDRGWY----DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
G+R Y E G Y D++ + GY D Y D D Y + +
Sbjct: 85 GDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDS-YDSYGKSHSE 139
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 93 (37.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V +V D+ET + RG+ FI + + A + +G+ LDGR++ VD
Sbjct: 31 PISEVV-VVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKSLDGRQIRVD 80
Score = 61 (26.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LF+ L++ T E ++ F S+GPI ++
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVV 36
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 104 (41.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV-ERGRTVP 241
V L D T +PRG+ F+E+ +D + A K+ +G ++DG R+ V V ++GR+ P
Sbjct: 41 VYLPIDYYTKEPRGFGFVEFYDAKDAEQALKEMNGSEIDGSRIEVFVAQKGRSDP 95
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 418 SKHERDRHGERDYDP-TDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQME 475
S +R + + YD D+ DR Y ++ Y D RY++Y+ + R + E
Sbjct: 158 SYRDRKNYHMKSYDKYRDRNHDRSLSRRSREYRNNTSRYRDKRRYDKYYRSTSRRASRHE 217
Query: 476 EDDYRYDRATSESRD--KERTRD 496
+ + Y + S D + TR+
Sbjct: 218 KRNENYKSKYNHSNDDYSDETRN 240
Score = 64 (27.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 418 SKHE-RDRHGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 474
S+HE R+ + + Y+ + D D+ H EH +N DD + D
Sbjct: 214 SRHEKRNENYKSKYNHSNDDYSDETRNSSKHSRKEH---VSRSISFNSEKDDAKKKNDNT 270
Query: 475 EEDDYRYDRATSESRDKERTRDLDRE 500
E D D SE R +E ++++E
Sbjct: 271 SERDNSNDWKGSEQRKEEEDEEVEKE 296
Score = 62 (26.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 439 RGWYDHH-ENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 493
R YD +Y + Y H + Y++Y D ++DR +YR + TS RDK R
Sbjct: 149 RSSYDRKMSSYRDRKNY--HMKSYDKYRDRNHDRSLSRRSREYRNN--TSRYRDKRR 201
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 104 (41.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV-ERGRTVP 241
V L D T +PRG+ F+E+ +D + A K+ +G ++DG R+ V V ++GR+ P
Sbjct: 41 VYLPIDYYTKEPRGFGFVEFYDAKDAEQALKEMNGSEIDGSRIEVFVAQKGRSDP 95
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 418 SKHERDRHGERDYDP-TDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQME 475
S +R + + YD D+ DR Y ++ Y D RY++Y+ + R + E
Sbjct: 158 SYRDRKNYHMKSYDKYRDRNHDRSLSRRSREYRNNTSRYRDKRRYDKYYRSTSRRASRHE 217
Query: 476 EDDYRYDRATSESRD--KERTRD 496
+ + Y + S D + TR+
Sbjct: 218 KRNENYKSKYNHSNDDYSDETRN 240
Score = 64 (27.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 418 SKHE-RDRHGERDYDPT--DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM 474
S+HE R+ + + Y+ + D D+ H EH +N DD + D
Sbjct: 214 SRHEKRNENYKSKYNHSNDDYSDETRNSSKHSRKEH---VSRSISFNSEKDDAKKKNDNT 270
Query: 475 EEDDYRYDRATSESRDKERTRDLDRE 500
E D D SE R +E ++++E
Sbjct: 271 SERDNSNDWKGSEQRKEEEDEEVEKE 296
Score = 62 (26.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 439 RGWYDHH-ENYEHHRGYGDHDR-YNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 493
R YD +Y + Y H + Y++Y D ++DR +YR + TS RDK R
Sbjct: 149 RSSYDRKMSSYRDRKNY--HMKSYDKYRDRNHDRSLSRRSREYRNN--TSRYRDKRR 201
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 79 (32.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 223
+V L+ D+ETNK RG+AF+ + D K A + +G+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGK 72
Score = 50 (22.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG I ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVL 38
>ZFIN|ZDB-GENE-030131-6251 [details] [associations]
symbol:ppil4 "peptidylprolyl isomerase
(cyclophilin)-like 4" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160
PRINTS:PR00153 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6251 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 HOVERGEN:HBG057731 HSSP:Q27450 EMBL:BC056814
IPI:IPI00505393 UniGene:Dr.80688 ProteinModelPortal:Q6PGV9
PRIDE:Q6PGV9 InParanoid:Q6PGV9 ArrayExpress:Q6PGV9 Bgee:Q6PGV9
Uniprot:Q6PGV9
Length = 454
Score = 84 (34.6 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 493
D+++D G D E E R + D +R D D + E+D R S SRD+ER
Sbjct: 368 DEDEDDGRKDDREKRERKR-HSDSERTKDKRSKDRDE-SRREKDK---SRQRSRSRDRER 422
Query: 494 TRDLDRE 500
+D RE
Sbjct: 423 QKDKQRE 429
Score = 80 (33.2 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWR 244
++ D +T + YAFIE+ D + AY + D +D RR+ VD + + W+
Sbjct: 271 IIRDWKTGESLCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQSVSKIKWK 325
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIK 165
P LFV +L+ TT+ ++ F +G IK
Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGLIK 267
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
++ RL+ D ET +P+G+ FI + D + A K DG+ +DGR + V+V +
Sbjct: 34 KEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 92 (37.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN 242
P E V +V D+ET + RG+ FI + + A + +G LDGR++ VD G++
Sbjct: 31 PISEVV-VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVD-HAGKSARG 88
Query: 243 WRPRXXXXXXXXXXXXXXXXNQRY-SGR 269
R +Q Y SGR
Sbjct: 89 TRGGAFGAHGRGRSYSRGGGDQGYGSGR 116
Score = 63 (27.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ T E ++ F S+GPI ++
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVV 36
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 70 (29.7 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNG 174
+L++ RLS ETT+ + F YG I R NG
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNG 37
Score = 69 (29.3 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 29/96 (30%), Positives = 37/96 (38%)
Query: 420 HERDRHGER----DYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQM 474
H RDR R +D D+ DR D + R DR D DR D
Sbjct: 114 HSRDRRSRRYRSPSWDRRDRSRDRS-RDRSRDRSRDRSRDRRDRRRDRRDRSRDRSRDGR 172
Query: 475 EE---D-------DYRYDRATSESRDKERTRDLDRE 500
E D D R +R TS R ++R+RD R+
Sbjct: 173 RERSRDRSRDRSRDARRNRDTSRDRSRDRSRDRSRD 208
Score = 68 (29.0 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 194 KETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237
K+TN R YAF+EY RD A K +G L ++ V+ +G
Sbjct: 33 KKTNG-RCYAFVEYKERRDADDALKALNGTTLLNSKISVEWAKG 75
Score = 60 (26.2 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 22/80 (27%), Positives = 29/80 (36%)
Query: 421 ERDRHGERDYDPT-DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDY 479
+R R R+ D + D+ DR + R R N D DR +
Sbjct: 182 DRSRDARRNRDTSRDRSRDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSRDR-SRSNGGGS 240
Query: 480 RYDRATSESRDKERTRDLDR 499
RY SRD+ R R DR
Sbjct: 241 RYSSRRDRSRDRSRDRSRDR 260
Score = 57 (25.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 422 RDRHGERDYDP----TDQEDDRGWYDHHE-NYEHHRGYGDHDRYNQYHDDDNDRYDQMEE 476
RDR +R D D DR + + + + R G RY+ D DR
Sbjct: 199 RDRSRDRSRDGGNIIRDTSRDRRRNNSRDRSRDRSRSNGGGSRYSSRRDRSRDR----SR 254
Query: 477 DDYRYDRATSESRDKERTRDLDRE 500
D R DR+ S ++K+R L +E
Sbjct: 255 DRSR-DRSRSLKKEKKRDSSLSKE 277
Score = 55 (24.4 bits), Expect = 0.00044, Sum P(3) = 0.00043
Identities = 20/83 (24%), Positives = 29/83 (34%)
Query: 418 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
S+ RDR +R D+ D G + + R + D DR D
Sbjct: 150 SRDRRDRRRDRRDRSRDRSRD-GRRERSRDRSRDRSRDARRNRDTSRDRSRDRSRDRSRD 208
Query: 478 DYRYDRATSESRDKERTRDLDRE 500
R TS R + +RD R+
Sbjct: 209 GGNIIRDTSRDRRRNNSRDRSRD 231
>GENEDB_PFALCIPARUM|PF13_0042 [details] [associations]
symbol:PF13_0042 "fork head domain protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005634
"nucleus" evidence=ISS] InterPro:IPR000253 InterPro:IPR008984
Pfam:PF00498 PROSITE:PS50006 SMART:SM00240 GO:GO:0005634
Gene3D:2.60.200.20 SUPFAM:SSF49879 EMBL:AL844509 KO:K13108
RefSeq:XP_001349805.1 ProteinModelPortal:Q8IEN7 IntAct:Q8IEN7
MINT:MINT-1751032 EnsemblProtists:PF13_0042:mRNA GeneID:814021
KEGG:pfa:PF13_0042 EuPathDB:PlasmoDB:PF3D7_1307800 OMA:DKHNKYD
Uniprot:Q8IEN7
Length = 561
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 418 SKHERDRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD-DDNDRYDQME 475
SK + D++ ++D YD D+ D G YD H+ Y+ + Y HD+Y++++ D +D+YD+ +
Sbjct: 102 SKEKGDKYCKKDKYDKHDKYDKNGKYDKHDKYDKYNKYDKHDKYDKHNKYDKHDKYDKHD 161
Query: 476 EDDYRYDRATSESR-DKERTRDLDREY 501
+ D ++D+ + DK D +Y
Sbjct: 162 KYD-KHDKYDKHDKYDKYNKYDKHDKY 187
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 419 KHER-DRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
KH++ D+H + YD D+ D YD H+ Y+ H Y H++Y+++ D D++D+ ++
Sbjct: 159 KHDKYDKHDK--YDKHDKYDKYNKYDKHDKYDKHNKYDKHNKYDKH--DKYDKHDKYDKH 214
Query: 478 DYRYDRATSESRDKERTRDLDREY 501
D +Y++ R + + +D+ Y
Sbjct: 215 D-KYNKHDKHDRHDKYDKQMDKIY 237
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 419 KHER-DRHGERD----YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD--DDNDRY 471
KH++ D++ + D YD ++ D YD H+ Y+ H Y HD+YN+ HD D +D+Y
Sbjct: 171 KHDKYDKYNKYDKHDKYDKHNKYDKHNKYDKHDKYDKHDKYDKHDKYNK-HDKHDRHDKY 229
Query: 472 DQMEEDDYRYDRATSESR-DKERTR-DLDREY 501
D+ + Y +++ +R K+ + D R+Y
Sbjct: 230 DKQMDKIYILKKSSEHTRTSKDNSYYDSKRKY 261
Score = 118 (46.6 bits), Expect = 0.00051, P = 0.00051
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 419 KHER-DRHGERD----YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD-DDNDRYD 472
KH++ D++ + D YD ++ D YD H+ Y+ H Y HD+Y++Y+ D +D+YD
Sbjct: 129 KHDKYDKYNKYDKHDKYDKHNKYDKHDKYDKHDKYDKHDKYDKHDKYDKYNKYDKHDKYD 188
Query: 473 QMEEDDY--RYDRATSESRDKERTRDLDREY 501
+ + D +YD+ + DK D +Y
Sbjct: 189 KHNKYDKHNKYDK--HDKYDKHDKYDKHDKY 217
>UNIPROTKB|Q8IEN7 [details] [associations]
symbol:PF13_0042 "Fork head domain protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498
PROSITE:PS50006 SMART:SM00240 GO:GO:0005634 Gene3D:2.60.200.20
SUPFAM:SSF49879 EMBL:AL844509 KO:K13108 RefSeq:XP_001349805.1
ProteinModelPortal:Q8IEN7 IntAct:Q8IEN7 MINT:MINT-1751032
EnsemblProtists:PF13_0042:mRNA GeneID:814021 KEGG:pfa:PF13_0042
EuPathDB:PlasmoDB:PF3D7_1307800 OMA:DKHNKYD Uniprot:Q8IEN7
Length = 561
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 418 SKHERDRHGERD-YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD-DDNDRYDQME 475
SK + D++ ++D YD D+ D G YD H+ Y+ + Y HD+Y++++ D +D+YD+ +
Sbjct: 102 SKEKGDKYCKKDKYDKHDKYDKNGKYDKHDKYDKYNKYDKHDKYDKHNKYDKHDKYDKHD 161
Query: 476 EDDYRYDRATSESR-DKERTRDLDREY 501
+ D ++D+ + DK D +Y
Sbjct: 162 KYD-KHDKYDKHDKYDKYNKYDKHDKY 187
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 419 KHER-DRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
KH++ D+H + YD D+ D YD H+ Y+ H Y H++Y+++ D D++D+ ++
Sbjct: 159 KHDKYDKHDK--YDKHDKYDKYNKYDKHDKYDKHNKYDKHNKYDKH--DKYDKHDKYDKH 214
Query: 478 DYRYDRATSESRDKERTRDLDREY 501
D +Y++ R + + +D+ Y
Sbjct: 215 D-KYNKHDKHDRHDKYDKQMDKIY 237
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 419 KHER-DRHGERD----YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD--DDNDRY 471
KH++ D++ + D YD ++ D YD H+ Y+ H Y HD+YN+ HD D +D+Y
Sbjct: 171 KHDKYDKYNKYDKHDKYDKHNKYDKHNKYDKHDKYDKHDKYDKHDKYNK-HDKHDRHDKY 229
Query: 472 DQMEEDDYRYDRATSESR-DKERTR-DLDREY 501
D+ + Y +++ +R K+ + D R+Y
Sbjct: 230 DKQMDKIYILKKSSEHTRTSKDNSYYDSKRKY 261
Score = 118 (46.6 bits), Expect = 0.00051, P = 0.00051
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 419 KHER-DRHGERD----YDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHD-DDNDRYD 472
KH++ D++ + D YD ++ D YD H+ Y+ H Y HD+Y++Y+ D +D+YD
Sbjct: 129 KHDKYDKYNKYDKHDKYDKHNKYDKHDKYDKHDKYDKHDKYDKHDKYDKYNKYDKHDKYD 188
Query: 473 QMEEDDY--RYDRATSESRDKERTRDLDREY 501
+ + D +YD+ + DK D +Y
Sbjct: 189 KHNKYDKHNKYDK--HDKYDKHDKYDKHDKY 217
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 84 (34.6 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
+ LV DK+T K +G+ F+ Y R A +G K+ GR + VD V N+RP
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVD-----HVANYRP 117
Score = 81 (33.6 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ ERDR GER+ D ++E DRG E + R G R + D + +R + D
Sbjct: 252 QRERDREGEREGDK-ERERDRGRQRDGER-QRERD-GGRQRDGE-RDRERERDGGRQRDG 307
Query: 479 YRY-DRATSESRDKERTRDLDRE 500
R +R RD ER R+ +R+
Sbjct: 308 ERQRERDGGRQRDGERDRERERD 330
Score = 69 (29.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 421 ERDRHG--ERDYD-PTDQEDDRGWY-DHHENYEHHRGYG---DHDR-YNQYHDDDNDR-Y 471
ER+R G +RD D +QE D G D + E R G D DR Q D R
Sbjct: 326 ERERDGGRQRDGDRDREQERDGGRQRDVERDRERERDGGRQRDGDRDQEQERDGGRQRDV 385
Query: 472 DQMEEDDYRYDRATSESRDKERTRDLDRE 500
++++E + R RD+ER RD R+
Sbjct: 386 EKVKERERDGGRQRDGERDRERERDGGRQ 414
Score = 66 (28.3 bits), Expect = 0.00060, Sum P(3) = 0.00060
Identities = 28/83 (33%), Positives = 35/83 (42%)
Query: 421 ERDRHGERDYD-PTDQEDDR--GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
ER+R G R D DQE +R G E + G R D + DR + E D
Sbjct: 358 ERERDGGRQRDGDRDQEQERDGGRQRDVEKVKERERDGGRQR-----DGERDR--ERERD 410
Query: 478 DYRYDRATSESRDKERTRDLDRE 500
R E R ++R RD DRE
Sbjct: 411 G---GRQRDEERVRQRERDRDRE 430
Score = 64 (27.6 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 29/89 (32%), Positives = 36/89 (40%)
Query: 422 RDRHGERDYDPTDQEDDRGWY-DHHENYEHHRGY---GDHDRYNQY---HDDDNDRYDQM 474
R R GERD ++E D G D E G G+ DR + D DR +
Sbjct: 287 RQRDGERD---RERERDGGRQRDGERQRERDGGRQRDGERDRERERDGGRQRDGDRDREQ 343
Query: 475 EEDDYRY---DRATSESRDKERTRDLDRE 500
E D R +R RD R RD DR+
Sbjct: 344 ERDGGRQRDVERDRERERDGGRQRDGDRD 372
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRL 167
+F+ YE TE I F YG I +
Sbjct: 38 VFIGGFPYELTEGDIICVFSQYGEIANI 65
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 91 (37.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-VPNWRPR 246
+ +V DK N+P+G+AF+ Y + A + G+ LDGR + V+ + R+ + +PR
Sbjct: 106 MNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPR 165
Score = 68 (29.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYG 162
P+ S P L+V+ LS+ TTE ++ FE +G
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 101
>FB|FBgn0027617 [details] [associations]
symbol:CG5808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0006457 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00670000097658 KO:K12735 EMBL:AF132148
RefSeq:NP_651291.1 UniGene:Dm.3212 HSSP:P14832 SMR:Q9XYZ6
IntAct:Q9XYZ6 MINT:MINT-970905 STRING:Q9XYZ6
EnsemblMetazoa:FBtr0084738 GeneID:42957 KEGG:dme:Dmel_CG5808
UCSC:CG5808-RA FlyBase:FBgn0027617 InParanoid:Q9XYZ6 OMA:SIWGVVE
OrthoDB:EOG49S4P0 GenomeRNAi:42957 NextBio:831514 Uniprot:Q9XYZ6
Length = 653
Score = 89 (36.4 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 23/93 (24%), Positives = 42/93 (45%)
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXX 249
++ D++T YAF+E+ + +AAY + D +D RR+ VD + + WR +
Sbjct: 271 VIRDRKTGDSLQYAFVEFEDQKSCEAAYFKMDNVLIDDRRIHVDFSQSVSKVTWRGKGRG 330
Query: 250 XXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 282
N R ++P+ G SR+ +
Sbjct: 331 IEGDYRKLDFN--NLRDDKDHRKPNNGRSRTED 361
Score = 72 (30.4 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEH-HRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
RD+ G+R D+ D R ++ E + R + + R NQ + R +D+R
Sbjct: 498 RDQTGKRPTQNRDRNDSRRFHSPQEGRRNDERSHRETSR-NQRRSPER-RQQSRNREDHR 555
Query: 481 YDRATSESRDKERTRDLDRE 500
D +S ++ E+ R L E
Sbjct: 556 MDTHSSPNKSHEKKRKLSVE 575
Score = 54 (24.1 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRL-ICNSCNGGDS 177
P LFV +L+ TT+ ++ F S+G +K + GDS
Sbjct: 238 PENVLFVCKLNPVTTDDDLEIIFSSFGVLKGCEVIRDRKTGDS 280
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 63 (27.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV LS++T E +++ F YG I ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVV 36
Score = 63 (27.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 223
+V +V D+ET + RG+ F+ + + D K A +G+
Sbjct: 34 EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 70
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 74 (31.1 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPN--WR 244
R +AF+EY RD AY ++L GR ++ +E RT P+ WR
Sbjct: 46 RLFAFVEYEDRRDADEAYHDMHNKRL-GRDDILKIEWARTPPSASWR 91
Score = 73 (30.8 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ +RDR +RDYD D DR +N + R D DR DD DR + +
Sbjct: 133 RRDRDRDRDRDYD-RDSRRDRDRSRSPDNRDRDREMKDVDR------DDRDRRENGTNGE 185
Query: 479 YRYDRATSESRDKERTRDLD 498
R + ++S R DLD
Sbjct: 186 DR--KPAADSPPPAREEDLD 203
Score = 70 (29.7 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 434 DQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKER 493
D+ DRG D R Y +DR D+ + D YDR + RD+ R
Sbjct: 99 DRGSDRG--DRSRRSPRRGRSPSPPRRRDYSPRKDDRRDRDRDRDRDYDRDSRRDRDRSR 156
Query: 494 T---RDLDRE 500
+ RD DRE
Sbjct: 157 SPDNRDRDRE 166
Score = 49 (22.3 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKR 166
TL+V S+ T + EFE YG + R
Sbjct: 7 TLYVTGFSHGTRARDLAYEFERYGRLVR 34
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 108 (43.1 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V L+ D+ETNK RG+AF+ Y + D K A ++ +G+ LDG+ + V+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTYENPGDAKDAAREMNGKPLDGKPIKVE 82
Score = 48 (22.0 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LF+ L+ ET+E ++ F +G I ++
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVL 38
Score = 47 (21.6 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 451 HRGYGDHDRYNQYHDDDNDRYDQMEE------DDYRYDRATSESRDKERTRDLDREY 501
+ G G RY+ Y D Y + D Y +R R + L+R Y
Sbjct: 292 YSGSGGSSRYDDYGSSSRDGYGSRDSYPSSRSDPYSTNRGDRPGRQERGPPPLERGY 348
Score = 45 (20.9 bits), Expect = 4.4e-05, Sum P(3) = 4.4e-05
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 428 RDYDPTDQEDDRGWYDHH----ENY-EHHRGYGDHDRY 460
RDY P ++ Y H ++Y RGY D D Y
Sbjct: 214 RDYGPPPRDYPYREYSGHSSSRDDYGSGSRGYSDRDGY 251
Score = 38 (18.4 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 422 RDRHGERDYDPTDQED 437
RD +G RD P+ + D
Sbjct: 309 RDGYGSRDSYPSSRSD 324
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 89 (36.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 239
++ D+ET + RG+ F+ + A K+ DG++L+GR++ V++ R+
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115
Score = 57 (25.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 140 LFVARLSYETTESKIKREFESYGPI 164
LFV LS+ T +S +K+ F S+G +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEV 61
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 91 (37.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
P E V +V D+ET + RG+ FI + + A + +G LDGR++ VD
Sbjct: 31 PISEVV-VVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVD 80
Score = 62 (26.9 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LFV L++ T E ++ F S+GPI ++
Sbjct: 8 LFVGGLNFNTDERALEDHFSSFGPISEVV 36
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 95 (38.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 239
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++
Sbjct: 33 EVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVD-QAGKS 84
Score = 58 (25.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LF+ L++ET E +++ F YG I ++
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVV 35
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 87 (35.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 103 (41.3 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+V L+ D+ETNK RG+AF+ + D K A ++ +G+ LDG+ + V+
Sbjct: 36 EVLLMKDRETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVE 82
Score = 52 (23.4 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 422 RDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
RD +G R Y +D+ D G D + +H G D Y Y + R+ +E D
Sbjct: 230 RDDYGSRGY--SDR-DGYGGRDSRDYSDHPSGGSYRDSYESY---EGPRHHMVEAVD 280
Score = 52 (23.4 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 21/86 (24%), Positives = 31/86 (36%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYG---DHDRYNQYHDDDNDRYDQME 475
K D + RDY + D R + +Y + R YG D Y D D Y +
Sbjct: 192 KDRYDGYSGRDYGSS--RDSRDYGPPPRDYAY-RDYGHSSSRDDYGSRGYSDRDGYGGRD 248
Query: 476 EDDYRYDRATSESRDKERTRDLDREY 501
DY + RD + + R +
Sbjct: 249 SRDYSDHPSGGSYRDSYESYEGPRHH 274
Score = 49 (22.3 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 20/55 (36%), Positives = 23/55 (41%)
Query: 453 GYGDHDRYNQYHDDD----NDRYDQMEED-DYRY-DRATSESRDKERTRDL-DRE 500
GY DRY+ Y D D D DY Y D S SRD +R DR+
Sbjct: 188 GYSGKDRYDGYSGRDYGSSRDSRDYGPPPRDYAYRDYGHSSSRDDYGSRGYSDRD 242
Score = 47 (21.6 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLI 168
V D LF+ L+ ET E ++ F YG + ++
Sbjct: 2 VEADRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVL 38
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 104 (41.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 68 (29.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 126 PHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P DP V +++FV + YE TE ++K F GP+
Sbjct: 5 PVRDPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 93 (37.8 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 239
+V +V D+ET + RG+ F+ + + D K A +G+ +DGR++ VD + G++
Sbjct: 33 EVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVD-QAGKS 84
Score = 59 (25.8 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LF+ L+++T E +++ F YG I ++
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVV 35
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 104 (41.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 108 (43.1 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
KV L+ D++TNK RG+AF+ + D KAA + +G+ LDG+ ++V
Sbjct: 36 KVFLMKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMV 81
Score = 56 (24.8 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
+ D + LF+ L+ +T E +K EF YG I
Sbjct: 2 MEADRPEKLFIGGLNLKTDEKALKAEFGKYGHI 34
Score = 53 (23.7 bits), Expect = 5.5e-05, Sum P(3) = 5.5e-05
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 428 RDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRY-NQYHDDDNDRYDQMEEDDYRYDR 483
+ Y +D+ G Y+ ++ GDHDR N Y +DRY + + R DR
Sbjct: 969 KSYGLSDRYGGGGHYEEYQGSLPDAYSGDHDRSSNSY--GRSDRYSRGRDRVGRPDR 1023
Score = 50 (22.7 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 429 DYDPTDQEDDRGWYDHHE--NYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
D+ P ++ R +Y H +Y RG G+ N Y D++ D + YR
Sbjct: 251 DFVPALRDYSRRYYGHSSVPDYRPLRGDGNQ---NGYRGRDHEYTDHPSKGSYR 301
Score = 48 (22.0 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 440 GWYDHHEN-YEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR----YDRATSESRD 490
G D N Y+ YG Y +Y +D + + D Y A S RD
Sbjct: 840 GGRDSSSNSYDRSHRYGGGGHYEEYRGRSHDTHSRGRSPDAHSGDHYTEAYSRGRD 895
Score = 43 (20.2 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 21/83 (25%), Positives = 29/83 (34%)
Query: 423 DRHGER----DYDPTDQEDDRGWYDHHEN-YEHHRGYGDHDRYNQYHDDDND-RYDQMEE 476
DR+GE +Y + G + N Y YG RY +Y ++ R
Sbjct: 381 DRYGEEGCYEEYRGRSPDAHSGGRNSSSNSYGQSHHYGGEGRYEEYRGRSHEARSGGRST 440
Query: 477 DDY---RYDRATSESRDKERTRD 496
D + R D A S D D
Sbjct: 441 DAHSRGRSDDAYSGGHDSSSWSD 463
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 87 (35.7 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 104 (41.7 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 102 (41.0 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 234
VR+V D+ET +PRG+AFIE+ + A +Q +G + +GR + V++
Sbjct: 34 VRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNL 80
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 104 (41.7 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>TAIR|locus:2064811 [details] [associations]
symbol:AT2G40650 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] Pfam:PF03371 EMBL:CP002685 KO:K12849 OMA:YMRLTGS
InterPro:IPR005037 InterPro:IPR024767 PANTHER:PTHR23142
Pfam:PF12871 EMBL:AY087415 IPI:IPI00538261 RefSeq:NP_565937.1
UniGene:At.28044 UniGene:At.72542 PRIDE:Q8LB54
EnsemblPlants:AT2G40650.1 GeneID:818660 KEGG:ath:AT2G40650
TAIR:At2g40650 InParanoid:Q8LB54 PhylomeDB:Q8LB54
ProtClustDB:CLSN2688844 Genevestigator:Q8LB54 Uniprot:Q8LB54
Length = 355
Score = 122 (48.0 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/81 (38%), Positives = 42/81 (51%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYG-DHDRY---NQYHDDDNDRYDQM 474
+ + RH +RDYD D + DR DH +YE RG+G D DR + Y + D DR
Sbjct: 226 RRDSHRHRDRDYD-RDYDMDR---DHDRDYERERGHGRDRDRERDRDHYRERDRDRERGR 281
Query: 475 EEDDYRYDRATSESRDKERTR 495
+ + R DRA SR + R R
Sbjct: 282 DRERDRRDRARRRSRSRSRDR 302
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 100 (40.3 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 32/99 (32%), Positives = 44/99 (44%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GRT-VPNWRP 245
V + + T PRG+AF+ + RD + A DG +LDGR + V V R GR +P R
Sbjct: 43 VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLP--RS 100
Query: 246 RXXXXXXXXXXXXXXXXNQRYSGREQEPSRGP-SRSAEP 283
R ++ Y R + P R SRS P
Sbjct: 101 RQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGP 139
Score = 60 (26.2 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G TL V L+Y T+ ++R FE YG +
Sbjct: 8 PDVDG--MITLKVDNLTYRTSPDSLRRVFEKYGRV 40
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 85 (35.0 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 183 PCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
PC + +++T+ +N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 34 PC-KSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 81
Score = 59 (25.8 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSC 172
G P +TL+V LS + TE I + F GP C SC
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSC 38
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 87 (35.7 bits), Expect = 9.2e-05, Sum P(3) = 9.1e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 9.2e-05, Sum P(3) = 9.1e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPETLRRVFEKYGRV 40
Score = 46 (21.3 bits), Expect = 9.2e-05, Sum P(3) = 9.1e-05
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 470 RYDQMEEDDYRYDRATSESRDKERT 494
RY + Y R+ S SR K RT
Sbjct: 145 RYSRSRSRSYSRSRSRSRSRSKTRT 169
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 481 YDRATSESRDKERTR 495
Y R+ S SR + +TR
Sbjct: 154 YSRSRSRSRSRSKTR 168
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 480 RYDRATSESRDKERTRDLDR 499
RY R+ S S + R+R R
Sbjct: 145 RYSRSRSRSYSRSRSRSRSR 164
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 459 RYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTR 495
RY Y R + + R+ S SR + R+R
Sbjct: 109 RYGGYGRRSRSRSPRRRKHSRSRSRSRSRSRSRSRSR 145
Score = 38 (18.4 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 480 RYDRATSESRDKERTRDLDR 499
++ R+ S SR + R+R R
Sbjct: 126 KHSRSRSRSRSRSRSRSRSR 145
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 87 (35.7 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 44 (20.5 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 459 RYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
RY + D + R R R+ S SR + R+R R
Sbjct: 91 RYGRPPDSHHSRRGPPPRSPRRRRRSRSRSRSRSRSRSRSR 131
Score = 43 (20.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 480 RYDRATSESRDKERTRDLDR 499
RY R+ S SR + R+R +
Sbjct: 131 RYSRSKSRSRTRSRSRSTSK 150
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 104 (41.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 104 (41.7 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 104 (41.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 104 (41.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 453 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 453 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 453 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 453 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 453 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 453 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 25/75 (33%), Positives = 35/75 (46%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
++D+H + D D DR + ++ HHR D R N D D DR+D+ E R
Sbjct: 254 DKDKHRDSDSRRRDDSKDRRRRERDDD-GHHRSK-DRGRENS-RDRDRDRHDR-ERHRRR 309
Query: 481 YDRATSESRDKERTR 495
+D R KER R
Sbjct: 310 HDSRERHERRKERPR 324
Score = 76 (31.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 178 SRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
S+ G+P ++LV DKET K RG+ +++Y R A G + R + VD R
Sbjct: 54 SQYGEPVF--LKLVRDKETGKSRGFGWLKYEDQRSTDLAVDNLGGAVIKDRMMRVDHAR 110
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 104 (41.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 104 (41.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 104 (41.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 89 (36.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG--RT-----VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G RT P+W RPR
Sbjct: 44 PPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVELSNGEKRTRSRGPPPSWNRRPR 100
Score = 47 (21.6 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +S+++R F YGP++
Sbjct: 11 VYVGNLGNNGNKSELERAFGYYGPLR 36
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SR++ R R L RE
Sbjct: 125 RSRSFSRERRRERSLSRE 142
Score = 37 (18.1 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 471 YDQMEEDDYRYDRATSESRDKERTRDLDR 499
+++ DDYR + + R R R R
Sbjct: 95 WNRRPRDDYRRRSSPPQRRRSPRRRSFSR 123
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 104 (41.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 104 (41.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 104 (41.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 104 (41.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 104 (41.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 238
+RL TD E+ +P+G+ +++Y + + AY + G ++DGR + +D R
Sbjct: 413 IRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPR 463
Score = 63 (27.2 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDS 177
LFV LS+ TE + +EFE +G + I + G S
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRS 316
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 59 KPPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRAR 104
K P K+K P + ++ S D + + E PV++ +
Sbjct: 54 KKPKSKKKEPTPSSSSESESESESESDSSSSESESEDEKPVKKEVK 99
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 87 (35.7 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV 40
Score = 44 (20.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 453 GYGDHDRY--NQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
GYG R + R RY R+ S SR + R+R +
Sbjct: 114 GYGRRTRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 162
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 104 (41.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
Score = 64 (27.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
DP V +++FV + YE TE ++K F GP+
Sbjct: 8 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPV 42
>DICTYBASE|DDB_G0270156 [details] [associations]
symbol:DDB_G0270156 "RNA-binding protein 28"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0270156
EMBL:AAFI02000005 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT RefSeq:XP_646584.1
ProteinModelPortal:Q55C97 EnsemblProtists:DDB0190846 GeneID:8617554
KEGG:ddi:DDB_G0270156 InParanoid:Q55C97 ProtClustDB:CLSZ2846931
Uniprot:Q55C97
Length = 900
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ ++D +D D D ED+ D +N + + D + + DDD D D+ +EDD
Sbjct: 303 QQKQDSKENKDNDDDDDEDEED-EDKEDNKDENE---DEEMKEETDDDDEDEDDEEDEDD 358
Query: 479 YRYDRATSESRDKERTRD 496
+ + D++ D
Sbjct: 359 DNMEEGEDDEDDEDGEGD 376
Score = 78 (32.5 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
V++ T TN PRG+AF+ + + K+ + K+ R++++D
Sbjct: 240 VKVPTKPGTNTPRGFAFLTFKERESSEKVLKECNNEKIHTRQIVID 285
Score = 76 (31.8 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 24/83 (28%), Positives = 35/83 (42%)
Query: 418 SKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEED 477
SK +D + D D D ED D +E+ E D D +D++D D MEE
Sbjct: 308 SKENKDNDDDDDEDEED-EDKEDNKDENEDEEMKEETDDDDEDEDDEEDEDD--DNMEEG 364
Query: 478 DYRYDRATSESRDKERTRDLDRE 500
+ D E KE D+ ++
Sbjct: 365 EDDEDDEDGEGDKKESKLDVKKK 387
Score = 55 (24.4 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPIKR 166
K +FV L+ +TT ++ F GP+KR
Sbjct: 4 KQVFVKGLTPDTTNEDLENFFSDIGPLKR 32
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 238
VR+V D+ET +PRG+AF+E+ + A Q +G +GR + V++ + R
Sbjct: 33 VRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNR 83
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 238
VR+V D+ET +PRG+AF+E+ + A Q +G +GR + V++ + R
Sbjct: 33 VRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNR 83
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 85 (35.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GRTVPNWRPR 246
V + DK + + +G+ F+ + RD + A + DG+ +DGR + V + + R R
Sbjct: 48 VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGR 107
Query: 247 XXXXXXXXXXX-XXXXXNQRYSGREQEPSRGPSRSAEP 283
+ RYS R + P R SR+ P
Sbjct: 108 GGGGGRRRSRSPRRRSRSPRYS-RSRSPRRSRSRTRSP 144
Score = 68 (29.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+++G +L + LSY+TT + ++R FE YG I
Sbjct: 13 PDING--LTSLKIDNLSYQTTPNDLRRTFERYGDI 45
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 85 (35.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 25/98 (25%), Positives = 42/98 (42%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GRTVPNWRPR 246
V + DK + + +G+ F+ + RD + A + DG+ +DGR + V + + R R
Sbjct: 48 VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGGR 107
Query: 247 XXXXXXXXXXX-XXXXXNQRYSGREQEPSRGPSRSAEP 283
+ RYS R + P R SR+ P
Sbjct: 108 GGGGGRRRSRSPRRRSRSPRYS-RSRSPRRSRSRTRSP 144
Score = 68 (29.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+++G +L + LSY+TT + ++R FE YG I
Sbjct: 13 PDING--LTSLKIDNLSYQTTPNDLRRTFERYGDI 45
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 89 (36.4 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 23/92 (25%), Positives = 40/92 (43%)
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXX 250
D +PRG+A++++ RD + A D + + GR++ + +G R P+ + +
Sbjct: 44 DYYNRRPRGFAYVQFEDVRDAEDALHNLDKKWICGRQIEIQFAQGDRKTPHQMKAKEGSS 103
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 282
N+R R E R SRS E
Sbjct: 104 TYGSSRYDDDRYNRRSRSRSYERRRSRSRSIE 135
Score = 59 (25.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPI 164
P +LFV ++ + ++REF YGPI
Sbjct: 8 PNSSLFVRNIADDIRSEDLRREFGRYGPI 36
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 452 RGYGDHDRYNQYHDDDN-DRYDQMEEDDYRY-DRATSESRDKERTR 495
RG+ D ++ + +R + EE + R+ S SR K R+R
Sbjct: 203 RGHSKADSKSRCRESSKYNRESRREEQASKSPSRSVSRSRSKSRSR 248
Score = 37 (18.1 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQ 462
+ R R E++Y ++ RG E R DH R+N+
Sbjct: 127 RRSRSRSIEQNYGRSNSP--RGGRGA-ERLRRSRSRSDHGRFNR 167
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 77 (32.2 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237
+K+ + DK T P G+ F+ + D + A K G LD R + VD + G
Sbjct: 61 KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWG 112
Score = 59 (25.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 19/65 (29%), Positives = 28/65 (43%)
Query: 422 RDRHGERDYDPTDQ-EDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQM--EEDD 478
++RHG DY Q +DDR D+ H D D + + N R+ + +DD
Sbjct: 191 QNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHESRRDTD--SDMRPEKNPRFRESGDSDDD 248
Query: 479 YRYDR 483
DR
Sbjct: 249 GEDDR 253
Score = 58 (25.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 432 PTDQEDDR-GWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRAT-SESR 489
PT+ + R G ++ + ++ G GD+ R Q DD R + D+ R T S+ R
Sbjct: 173 PTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHESRRDTDSDMR 232
Query: 490 DKERTR 495
++ R
Sbjct: 233 PEKNPR 238
Score = 56 (24.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRLI 168
T+++ +S+ TTE ++ F G IK++I
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKII 64
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 101 (40.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 178 SRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237
S+ G D K+ +TD+ET + RG+ F+ + M+ A + +G+ LDGR + V+ +
Sbjct: 27 SKYGDVIDSKI--ITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQS 84
Query: 238 R 238
R
Sbjct: 85 R 85
Score = 41 (19.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 141 FVARLSYETTESKIKREFESYGPI 164
FV L + T + ++ F YG +
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDV 32
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 84 (34.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXX 250
D T +PRG+A++++ RD + A D + + GR++ + +G R PN + +
Sbjct: 44 DFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRS 280
+R R E R SRS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRS 133
Score = 63 (27.2 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPI 164
P +LFV ++ +T ++REF YGPI
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPI 36
Score = 44 (20.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 450 HHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
H + G ++ H RY++ E R+ S+SR + R+R R
Sbjct: 202 HTKTRGTSKTDSKTHYKSGSRYEK-ESRKKEPPRSKSQSRSQSRSRSKSR 250
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 84 (34.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXX 250
D T +PRG+A++++ RD + A D + + GR++ + +G R PN + +
Sbjct: 44 DFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRS 280
+R R E R SRS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRS 133
Score = 63 (27.2 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPI 164
P +LFV ++ +T ++REF YGPI
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPI 36
Score = 44 (20.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 450 HHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
H + G ++ H RY++ E R+ S+SR + R+R R
Sbjct: 202 HTKTRGTSKTDSKTHYKSGSRYEK-ESRKKEPPRSKSQSRSQSRSRSKSR 250
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 84 (34.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXX 250
D T +PRG+A++++ RD + A D + + GR++ + +G R PN + +
Sbjct: 44 DFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRS 280
+R R E R SRS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRS 133
Score = 63 (27.2 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPI 164
P +LFV ++ +T ++REF YGPI
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPI 36
Score = 44 (20.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 450 HHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDR 499
H + G ++ H RY++ E R+ S+SR + R+R R
Sbjct: 202 HTKTRGTSKTDSKTHYKSGSRYEK-ESRKKEPPRSKSQSRSQSRSRSKSR 250
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
VR+V D+ET +PRG+AF+E+ + A +Q +G +GR + V+
Sbjct: 35 VRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVN 80
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 81 (33.6 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+ LV DK+T K +G+ F+ Y R A +G K+ GR + VD
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD 110
Score = 66 (28.3 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 418 SKHERDRHGERDY-DPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 475
SKHE R+ + +E DRG D H R G HDR ++ R +
Sbjct: 255 SKHEHKSSSRREEREDRHRERDRGRSSDIHSRRHDRRSEGRHDRGSEGRSH-RSR-SRSR 312
Query: 476 EDDYRYDRATSESRDKERTRDLDREY 501
+ +R+ ++ SRD+E + + Y
Sbjct: 313 DKSHRHKKSR-HSRDRESSNPRELRY 337
Score = 48 (22.0 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 140 LFVARLSYETTESKIKREFESYGPI 164
+F+ L YE TE I F YG I
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEI 62
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 77 (32.2 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG--RTVPNWR 244
KV ++ DK +P+G+A++ + + + A + + + +DGR V++D + P+ +
Sbjct: 49 KVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPDTK 108
Query: 245 P 245
P
Sbjct: 109 P 109
Score = 58 (25.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 139 TLFVARLSYETTESKIKREFESYGPIKRL 167
TLFV +S+ +TE + + F YG + ++
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKV 50
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 84 (34.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXX 250
D T +PRG+A++++ RD + A D + + GR++ + +G R PN + +
Sbjct: 44 DFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRS 280
+R R E R SRS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRS 133
Score = 63 (27.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPI 164
P +LFV ++ +T ++REF YGPI
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPI 36
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SRD+ R R L RE
Sbjct: 125 RSRSLSRDRRRERSLSRE 142
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SRD+ R R L RE
Sbjct: 125 RSRSLSRDRRRERSLSRE 142
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SRD+ R R L RE
Sbjct: 125 RSRSLSRDRRRERSLSRE 142
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SRD+ R R L RE
Sbjct: 125 RSRSLSRDRRRERSLSRE 142
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 453 GYGDHDRYNQYHDDDNDRYDQ---MEEDDYRYDRATSESRDKERTRDLDRE 500
G D Y + RY + +E D+R S SRD+ R R L RE
Sbjct: 97 GRRPRDDYRRRSPPPRRRYLERACLEPSDFR-----SLSRDRRRERSLSRE 142
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SRD+ R R L RE
Sbjct: 125 RSRSLSRDRRRERSLSRE 142
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 85 (35.0 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SRD+ R R L RE
Sbjct: 125 RSRSLSRDRRRERSLSRE 142
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
symbol:PFC0865w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 91 (37.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 178 SRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
S+ G+P D V LV D ET K +GY F+ Y R A +G KL R ++VD
Sbjct: 57 SQYGEPID--VNLVRDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVD 110
Score = 66 (28.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 424 RHGERDYDPTDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
RH E+ T ++ D+ + H+ HR + + ++++ + + D+ + YD
Sbjct: 235 RHKEKRKSLTTKKYDKK--EKHKRKSDHRDKHRRRENHSRHREKEKDKKSHKRRHKHSYD 292
Query: 483 RATSESRDKERTRDLDR 499
+ +S SR + DR
Sbjct: 293 KYSSRSRSYSTSSSTDR 309
Score = 64 (27.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 500
H E H+ G + + DDD++ D + D +Y R E R T+ D++
Sbjct: 196 HDEKSRHNEGMKEEEEDEDDEDDDDEDDDDDDSVDIKYKRH-KEKRKSLTTKKYDKK 251
>UNIPROTKB|O97318 [details] [associations]
symbol:PFC0865w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 91 (37.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 178 SRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
S+ G+P D V LV D ET K +GY F+ Y R A +G KL R ++VD
Sbjct: 57 SQYGEPID--VNLVRDNETGKSKGYCFLSYADQRSTILAVDNFNGYKLLERPLVVD 110
Score = 66 (28.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/77 (20%), Positives = 35/77 (45%)
Query: 424 RHGERDYDPTDQEDDRGWYDHHENYEHHRG-YGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
RH E+ T ++ D+ + H+ HR + + ++++ + + D+ + YD
Sbjct: 235 RHKEKRKSLTTKKYDKK--EKHKRKSDHRDKHRRRENHSRHREKEKDKKSHKRRHKHSYD 292
Query: 483 RATSESRDKERTRDLDR 499
+ +S SR + DR
Sbjct: 293 KYSSRSRSYSTSSSTDR 309
Score = 64 (27.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 444 HHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYDRATSESRDKERTRDLDRE 500
H E H+ G + + DDD++ D + D +Y R E R T+ D++
Sbjct: 196 HDEKSRHNEGMKEEEEDEDDEDDDDEDDDDDDSVDIKYKRH-KEKRKSLTTKKYDKK 251
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 102 (41.0 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 178 SRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD--VE 235
S+ G+ D K+ + D+ET + RG+AF+ + T + A Q DG+ L GRR+ V+ E
Sbjct: 55 SKYGEVVDAKI--IVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYATE 111
Query: 236 RG 237
RG
Sbjct: 112 RG 113
Score = 52 (23.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 140 LFVARLSYETTESKIKREFESYGPI 164
+FV +SY T E ++ F YG +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEV 60
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 84 (34.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXX 250
D T +PRG+A++++ RD + A D + + GR++ + +G R PN + +
Sbjct: 44 DFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRS 280
+R R E R SRS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRS 133
Score = 63 (27.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPI 164
P +LFV ++ +T ++REF YGPI
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPI 36
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 86 (35.3 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER-GR 238
V + D+ T + RG+AF+ + RD + A DG LDGR + V + R GR
Sbjct: 43 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAILDGRELRVQMARYGR 94
Score = 57 (25.1 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
P+V G +L V L+Y T+ ++R FE YG +
Sbjct: 8 PDVDG--MTSLKVDNLTYRTSPETLRRVFEKYGRV 40
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 17/77 (22%), Positives = 24/77 (31%)
Query: 424 RHG-ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYRYD 482
RHG R P + R + R R Y + + +
Sbjct: 118 RHGARRSRSPRRRRRSRS-RSRSRSRSRSRSRYSRSRSRSYSRSRSKSHTPNKRKSKSPS 176
Query: 483 RATSESRDKERTRDLDR 499
R+ S SR K R+R R
Sbjct: 177 RSRSRSRSKSRSRSRSR 193
>DICTYBASE|DDB_G0294559 [details] [associations]
symbol:DDB_G0294559 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0294559 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13107
EMBL:AAFI02000058 OMA:VFSQNRY RefSeq:XP_001134546.1
ProteinModelPortal:Q1ZXF8 EnsemblProtists:DDB0232419 GeneID:8624369
KEGG:ddi:DDB_G0294559 ProtClustDB:CLSZ2847454 Uniprot:Q1ZXF8
Length = 348
Score = 92 (37.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 32/82 (39%), Positives = 41/82 (50%)
Query: 422 RDRHGERDYDPTDQEDDRGWY-DHHENYEHHRGYGDHDRYNQYHDDDNDRY-DQMEEDDY 479
+DR R + D+E DR Y D N R Y D R ++ D RY D+ E +Y
Sbjct: 273 KDRSRSRSRE-RDRERDRERYRDRDRNRSREREYRDRSR-SRSKSRDRYRYRDRSREREY 330
Query: 480 RYDRATSESRDKERTRDLDREY 501
R DR SRD+ER RD R+Y
Sbjct: 331 R-DR----SRDRERYRD-SRDY 346
Score = 65 (27.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
LV +KET + +G+ F+ Y + A +G L G+ + VD
Sbjct: 64 LVRNKETGRSQGFCFVGYDQQKSTVLAVDNLNGINLLGKTIKVD 107
>UNIPROTKB|G4N6U7 [details] [associations]
symbol:MGG_15285 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CM001234
RefSeq:XP_003716233.1 EnsemblFungi:MGG_15285T0 GeneID:12984362
KEGG:mgr:MGG_15285 Uniprot:G4N6U7
Length = 627
Score = 122 (48.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDD 478
+ RDR ER+ + D++ DR DHH + + R D DR + DDD +R + D
Sbjct: 460 RRRRDRERERERE-RDRDRDRADRDHHRDRDRDR---DRDR-EKGRDDDRERRTPRDRDR 514
Query: 479 YRYDRATSESRDKERTRDLDRE 500
R DR RD++R RD DRE
Sbjct: 515 DR-DRERDRERDRDRERDRDRE 535
Score = 39 (18.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 81 AEPGDPLYAPPVEKAETPVERRAR 104
A P +P+ KA++ ERR+R
Sbjct: 355 ASPAEPVSPGGNSKADSHDERRSR 378
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 86 (35.3 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 27/86 (31%), Positives = 37/86 (43%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWR--PRXXXXXXXXXX 256
P G+AF+E+ RD A ++ DGR L G RV V++ G +R P
Sbjct: 49 PPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVEMSNGEKRSRFRGPPPSWSRRPRDDY 108
Query: 257 XXXXXXNQRYS--GREQEPSRGPSRS 280
+R S R + P R SRS
Sbjct: 109 RRGDDYRRRSSPPARHRSPRRSFSRS 134
Score = 50 (22.7 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 129 DPNVSGD-PYKT-LFVARLSYETTESKIKREFESYGPIK 165
DP+++ D P ++V L +++++R F YGP++
Sbjct: 3 DPSLTRDCPLDCKVYVGNLGNSGNKTELERAFGYYGPLR 41
Score = 39 (18.8 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 483 RATSESRDKERTRDLDRE 500
R+ S SR++ R R L R+
Sbjct: 135 RSRSLSRERRRERSLSRD 152
Score = 39 (18.8 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 483 RATSESRDKERTRDLDREY 501
R+ S R +ER+ DR Y
Sbjct: 137 RSLSRERRRERSLSRDRNY 155
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 84 (34.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG-RTVPN-WRPRXXXX 250
D T +PRG+A++++ RD + A D + + GR++ + +G R PN + +
Sbjct: 44 DFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
Query: 251 XXXXXXXXXXXXNQRYSGREQEPSRGPSRS 280
+R R E R SRS
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRS 133
Score = 63 (27.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPI 164
P +LFV ++ +T ++REF YGPI
Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPI 36
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 85 (35.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 199 PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT-------VPNW--RPR 246
P G+AF+E+ RD A ++ DGR L G RV V++ G P+W RPR
Sbjct: 45 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPR 101
Score = 44 (20.5 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 140 LFVARLSYETTESKIKREFESYGPIK 165
++V L +++++R F YGP++
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLR 37
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 60 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 98
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 115 (45.5 bits), Expect = 0.00058, P = 0.00058
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 60 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 98
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 115 (45.5 bits), Expect = 0.00063, P = 0.00062
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 5 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 58
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 59 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 97
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 115 (45.5 bits), Expect = 0.00063, P = 0.00063
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 60 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 98
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 60 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 98
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 60 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 98
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 60 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 98
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 115 (45.5 bits), Expect = 0.00064, P = 0.00064
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRL-VT 192
G P +TL+V LS + TE I + F GP C SC D + + V V
Sbjct: 6 GQP-RTLYVGNLSRDVTEVLILQLFSQIGP-----CKSCKMITEQPDSRRVNSSVGFSVL 59
Query: 193 DKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
+N P Y F+E+ RD AA +GRK+ G+ V V+
Sbjct: 60 QHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 98
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 104 (41.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 50 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 94
Score = 53 (23.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 138 KTLFVARLSYETTESKIKREFESYGPI 164
+++FV + YE TE ++K F G +
Sbjct: 20 RSVFVGNIPYEATEEQLKDIFSEVGSV 46
>UNIPROTKB|E1C3R0 [details] [associations]
symbol:PPIL4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl
cis-trans isomerase activity" evidence=IEA] [GO:0006457 "protein
folding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 GO:GO:0006457
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00670000097658
KO:K12735 OMA:DRTQNRS CTD:85313 EMBL:AADN02025352 IPI:IPI00603037
RefSeq:XP_419663.2 UniGene:Gga.34615 ProteinModelPortal:E1C3R0
Ensembl:ENSGALT00000020195 GeneID:421625 KEGG:gga:421625
NextBio:20824363 Uniprot:E1C3R0
Length = 478
Score = 79 (32.9 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 178 SRDG--KPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 235
SR G K C+ ++ D +T + YAFIE+ D + AY + D +D RR+ VD
Sbjct: 261 SRFGPIKSCE----VIRDWKTGESLCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFS 316
Query: 236 RGRTVPNWR 244
+ W+
Sbjct: 317 QSVAKIKWK 325
Score = 59 (25.8 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIK 165
P LFV +L+ TT+ ++ F +GPIK
Sbjct: 238 PENVLFVCKLNPVTTDEDLEIIFSRFGPIK 267
Score = 59 (25.8 bits), Expect = 0.00067, Sum P(3) = 0.00067
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 427 ERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR-YDRAT 485
++ Y D+EDD+ + ++ H G ++ + DR+ R Y +
Sbjct: 388 KKHYHSEDEEDDKRTKKYKDSDRKHEGERCREKMKS---EKKDRHRSRSRSQERSYSKHK 444
Query: 486 SESRDKERTRDLDRE 500
+ R+ R RD D++
Sbjct: 445 DKYREDVRIRDWDKK 459
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 81 (33.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 186 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
E+ +V D++TN+ RG+ F+ + + AA + ++ DGR + VD
Sbjct: 29 EEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRVD 76
Score = 54 (24.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLI 168
LF+ L++ TT+ ++ F YG I+ +
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAV 32
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 104 (41.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 189 RLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
RLV D+ET KP+GY F EY +A + +GR+ GR + VD
Sbjct: 54 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 98
Score = 54 (24.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYG 162
DP V +++FV + YE TE ++K F G
Sbjct: 16 DPAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVG 48
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 95 (38.5 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 238
G D K+ + D+ET + RG+ F+ + + MK A + +G+ LDGR + V+ + R
Sbjct: 32 GDVIDSKI--INDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 47 (21.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 133 SGDPYKTLFVARLSYETTESKIKREFESYGPI 164
SGD FV L++ T + ++ F YG +
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDV 34
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 87 (35.7 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233
++LV D+E+ KP+G+ F EY +A + +G ++ GR + VD
Sbjct: 45 LKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVD 90
Score = 71 (30.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 125 DPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRL 167
D + ++ +++FV + YE TE K+K F GP+ L
Sbjct: 3 DKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSL 45
>DICTYBASE|DDB_G0274361 [details] [associations]
symbol:prpf38a "putative U4/U6.U5 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] dictyBase:DDB_G0274361
Pfam:PF03371 GenomeReviews:CM000151_GR EMBL:AAFI02000012
eggNOG:NOG241318 KO:K12849 InterPro:IPR005037 InterPro:IPR024767
PANTHER:PTHR23142 Pfam:PF12871 RefSeq:XP_643885.1
EnsemblProtists:DDB0233545 GeneID:8619311 KEGG:ddi:DDB_G0274361
InParanoid:Q86IV3 OMA:PYWKEKC ProtClustDB:CLSZ2515186
Uniprot:Q86IV3
Length = 515
Score = 116 (45.9 bits), Expect = 0.00075, P = 0.00075
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 419 KHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRG-YGDHDRY-----NQYHDDDNDRYD 472
KH +++H E+ + + E++ Y +N + + Y D D+Y + Y D DN +YD
Sbjct: 274 KH-KEKHKEK-HKENENENENKRYKEKDNKDGEKERYIDRDKYRDRDRDSYRDRDNYKYD 331
Query: 473 QMEED-DYRYDRATSESRDKERTRDLDRE 500
+ D +Y + ++ RD++R RD+DRE
Sbjct: 332 DNDRDRSTKYHKDSNRDRDRDRYRDIDRE 360
>DICTYBASE|DDB_G0281687 [details] [associations]
symbol:DDB_G0281687 "U2 snRNP-associated SURP
motif-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0281687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG307351 RefSeq:XP_640578.4
ProteinModelPortal:Q54TL3 EnsemblProtists:DDB0252764 GeneID:8623186
KEGG:ddi:DDB_G0281687 OMA:GINYCAI Uniprot:Q54TL3
Length = 951
Score = 119 (46.9 bits), Expect = 0.00078, P = 0.00077
Identities = 32/82 (39%), Positives = 41/82 (50%)
Query: 421 ERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQMEEDDYR 480
+RD G+RD D D+E DR D + + R GD DR D D +R + D R
Sbjct: 189 DRDYRGDRDRD-RDRERDRD-RDRERDRDRERDRGDRDRDR---DRDRERERDRDRDRER 243
Query: 481 -YDRATSESRDKERTRDLDREY 501
DR RD+ER RD DR+Y
Sbjct: 244 DRDRERDRDRDRERERDRDRDY 265
>UNIPROTKB|O31802 [details] [associations]
symbol:ynzH "Uncharacterized protein YnzH" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0005515 "protein
binding" evidence=IPI] EMBL:AL009126 GenomeReviews:AL009126_GR
ProtClustDB:CLSK503092 PIR:B69895 RefSeq:NP_389650.1
ProteinModelPortal:O31802 EnsemblBacteria:EBBACT00000000248
GeneID:939580 KEGG:bsu:BSU17670 PATRIC:18975353 GenoList:BSU17670
OMA:DKKYYDD BioCyc:BSUB:BSU17670-MONOMER Uniprot:O31802
Length = 86
Score = 92 (37.4 bits), Expect = 0.00086, P = 0.00086
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 429 DYDPTDQEDDRGWYDHHE-NYEHHRGYGDHDRYNQYHDDDNDRYDQM--EEDDYRYD 482
D D + D+ +YDH + +Y++ + Y DHD+ +Y+DD + Y++ ++DD+ YD
Sbjct: 24 DNDKKHYDCDK-YYDHDKKHYDYDKKYDDHDK--KYYDDHDYHYEKKYYDDDDHYYD 77
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 501 343 0.00096 116 3 11 23 0.46 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 224
No. of states in DFA: 607 (65 KB)
Total size of DFA: 249 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.46u 0.12s 30.58t Elapsed: 00:00:02
Total cpu time: 30.49u 0.12s 30.61t Elapsed: 00:00:02
Start: Sat May 11 10:12:38 2013 End: Sat May 11 10:12:40 2013
WARNINGS ISSUED: 1