BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010771
(501 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 280/497 (56%), Positives = 331/497 (66%), Gaps = 81/497 (16%)
Query: 1 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRAPLEYKP 60
MGD D F+RN NAAVQAR K QNRANVLQLKL+GQSHPTGLT NLLKLFEPR PLEYKP
Sbjct: 1 MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60
Query: 61 PPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAEKAAEE 120
PPEKRKCPP TGMAQFVS+FAEPGDP YAPP + E P ++R RIHKLRLEKG EKAAE+
Sbjct: 61 PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD 180
LKKYDP+NDPN +GDPYKTLFV+RL+YE++ESKIKREFESYGPIKR
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKR-------------- 166
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240
V LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTV
Sbjct: 167 -------VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTV 219
Query: 241 PNWRPRRLGGGLGTTRV-GGEEVNQRYSGREQEPSRGPSRSAEP-RIREDRHGDRDRERS 298
PNWRPRRLGGGLGT+RV GGEE+ EQ+P S+S EP R RE +RE+S
Sbjct: 220 PNWRPRRLGGGLGTSRVGGGEEIVG-----EQQPQGRTSQSEEPSRPRE------EREKS 268
Query: 299 RERGRDREREREKSLELSHDRPRDRDH---RDDRHHRDRDRTRDRERERDRGRERDRDRT 355
RE+G++RER R ELSH++PR+R R+D+HHRDRD+ R
Sbjct: 269 REKGKERERSR----ELSHEQPRERSRDRPREDKHHRDRDQGGRDRDRDSRRDRDRTRDR 324
Query: 356 RDRDRGRDRGRDHERDREKDRDKERDRDRTRERERDRDYEVGDPDRDRGYSRDRDSDYDR 415
DRD R ++ DRDR+R++ERD + + G SR+RD++Y
Sbjct: 325 GDRD------RRDRDRGRDRTSRDHDRDRSRKKERDYEGGEYE-HEGGGRSRERDAEY-- 375
Query: 416 IDSKHERDRHGERDYDPTDQEDDRGWYDHHENYEHHRGYGDHDRYNQYHDDDNDRYDQME 475
GE E+ RG+Y+ + GD DRY+ RYD+ME
Sbjct: 376 ---------RGE-------PEETRGYYEDDQ--------GDTDRYSH-------RYDKME 404
Query: 476 EDDYRYDRATSESRDKE 492
EDD+RY+R S+ E
Sbjct: 405 EDDFRYEREYKRSKRSE 421
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 175 bits (444), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 124/233 (53%), Positives = 151/233 (64%), Gaps = 29/233 (12%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRK-----CPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ ++ ELK +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216
EFE YGPIKR + +V K + KPRGYAFIEY H RDM +A
Sbjct: 122 EFEVYGPIKR---------------------IHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
Query: 217 YKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGR 269
YK ADG+K+DGRRVLVDVERGRTV WRPRRLGGGLG TR GG +VN R+SGR
Sbjct: 161 YKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 213
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 124/234 (52%), Positives = 152/234 (64%), Gaps = 29/234 (12%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRK-----CPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ ++ ELK +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216
EFE YGPIKR + +V K + KPRGYAFIEY H RDM +A
Sbjct: 122 EFEVYGPIKR---------------------IHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
Query: 217 YKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGRE 270
YK ADG+K+DGRRVLVDVERGRTV WRPRRLGGGLG TR GG +VN R+SGR+
Sbjct: 161 YKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/234 (52%), Positives = 152/234 (64%), Gaps = 29/234 (12%)
Query: 42 LTANLLKLFEPRAPLEYKPPPEKRK-----CPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ ++ ELK +DPHNDPN GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216
EFE YGPIKR + +V K + KPRGYAFIEY H RDM +A
Sbjct: 122 EFEVYGPIKR---------------------IHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
Query: 217 YKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGRE 270
YK ADG+K+DGRRVLVDVERGRTV WRPRRLGGGLG TR GG +VN R+SGR+
Sbjct: 161 YKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 150/233 (64%), Gaps = 29/233 (12%)
Query: 42 LTANLLKLFEPRAPLEYKPPP-----EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ + ELK +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216
EFE YGPIKR + +V +K + KPRGYAFIEY H RDM +A
Sbjct: 122 EFEVYGPIKR---------------------IHMVYNKRSGKPRGYAFIEYEHERDMHSA 160
Query: 217 YKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGR 269
YK ADG+K+DGRRVLVDVERGRTV WRPRRLGGGLG TR GG +VN R+SGR
Sbjct: 161 YKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 213
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 148/233 (63%), Gaps = 26/233 (11%)
Query: 42 LTANLLKLFEPRAPLEYKPPP-----EKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAE 96
L NLL LF PR P+ Y PP EK P G+A ++ F +P D APP +AE
Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61
Query: 97 TPVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKR 156
T ER R + ++E+ + ELK +DPHND N GD +KTLFVAR++Y+TTESK++R
Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 157 EFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216
EFE YGPIKR+ G + S KPRGYAFIEY H RDM +A
Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGS------------------GKPRGYAFIEYEHERDMHSA 163
Query: 217 YKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGR 269
YK ADG+K+DGRRVLVDVERGRTV WRPRRLGGGLG TR GG +VN R+SGR
Sbjct: 164 YKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 216
>sp|Q55FQ0|RU17_DICDI U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium
discoideum GN=snrnp70 PE=3 SV=1
Length = 459
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 131/209 (62%), Gaps = 31/209 (14%)
Query: 71 TGMAQFVSHFAEPGDPLYAPPVEK--AETPVERRARIHKLRLEKGAEKAAEELKKYDPHN 128
TG+ ++S F +P + P +K E E+R + KL++ + E+ ++ LK +DP++
Sbjct: 33 TGLRDYLSIFTDPSN---EEPFKKEHIENLEEKREKKRKLKISENDERISKSLKAWDPYS 89
Query: 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKV 188
+ +GDPYKT+FV+R+SY+TT+ K++ EF +GPIK L
Sbjct: 90 NSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLF-------------------- 129
Query: 189 RLVTDKETNKP---RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245
LV K++N P GYAFIE+ RDMKAAYKQADG K+D RR++VD+ERGR + NW+P
Sbjct: 130 -LV--KDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKP 186
Query: 246 RRLGGGLGTTRVGGEEVNQRYSGREQEPS 274
R+ GGGLG TR GG +VNQ +SGRE S
Sbjct: 187 RKFGGGLGNTRAGGVDVNQTFSGREMSES 215
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 144/231 (62%), Gaps = 28/231 (12%)
Query: 42 LTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L NLL LF R P+ + PP P ++K G+A+F++ F +P D P + ET
Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKD---TPLPKTVET 61
Query: 98 PVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
ER R + + E+ A K E+ +DP N + DP++TLF+AR++Y+T+ESK++RE
Sbjct: 62 RQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRRE 121
Query: 158 FESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217
FE YGPIK+++ L+ D+E+ KP+GYAFIEY H RDM AAY
Sbjct: 122 FEFYGPIKKIV---------------------LIHDQESGKPKGYAFIEYEHERDMHAAY 160
Query: 218 KQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSG 268
K ADG+K+D +RVLVDVER RTV W PRRLGGGLG TR GG +VN ++SG
Sbjct: 161 KHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSG 211
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 125/211 (59%), Gaps = 30/211 (14%)
Query: 42 LTANLLKLFEPRAPLEYK----PPPEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAET 97
L A LL LF PR PL Y PPEKR P ++G+A+++ +A+ D Y P E+
Sbjct: 5 LPAPLLALFAPRPPLRYLPPMDVPPEKRSTPRVSGIAKYLK-YAQSHDQQYHP----TES 59
Query: 98 PVERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKRE 157
E+R R+ + ++ E+ +K +DP +D +V GDPYKT+F++RLSY+T ES I+RE
Sbjct: 60 LEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIERE 119
Query: 158 FESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217
F YGPI E++R+V +K T K GYAF+ + RD+K AY
Sbjct: 120 FTRYGPI---------------------ERIRVVRNKVTGKSMGYAFVVFERERDLKVAY 158
Query: 218 KQADGRKLDGRRVLVDVERGRTVPNWRPRRL 248
K + G L+GRR++VDVERGRTV W PR+L
Sbjct: 159 KASAGLMLNGRRIVVDVERGRTVKGWLPRKL 189
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 47/217 (21%)
Query: 48 KLFEPRAPLEYK-----PPPEKRKCPPLTGMAQFVS----HFAEPGDPLYAPPVEKAE-T 97
+LF+PR PL YK P +++ P +TG+A +S H+ E E E +
Sbjct: 14 RLFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYME----------EFPEGS 63
Query: 98 PVERRARIHKLRLEK--GAEKAAEELKKYDPHNDPNVS-GDPYKTLFVARLSYETTESKI 154
P R ++L K A+ L+ ++P+ DP++ DPY+T+F+ RL Y+ E ++
Sbjct: 64 PNNHLQRYEDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIEL 123
Query: 155 KREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214
++ F +G I EK+R+V DK T K +GYAFI + K
Sbjct: 124 QKYFVKFGEI---------------------EKIRIVKDKITQKSKGYAFIVFKDPISSK 162
Query: 215 AAYKQAD---GRKLDGRRVLVDVERGRTVPNWRPRRL 248
A+K+ G ++ R +VD+ERGRTV ++PRRL
Sbjct: 163 MAFKEIGVHRGIQIKDRICIVDIERGRTVKYFKPRRL 199
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 86/157 (54%), Gaps = 27/157 (17%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD 180
L +Y P+ V GDP TLFVARL+ +TTE K++ F +G I+RL
Sbjct: 35 LARYKPNR--GVCGDPDLTLFVARLNPQTTEEKLRDVFSKFGDIRRL------------- 79
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240
RLV D T + YAFIEY R +K A++ A+ LD +LVDVE+ RT+
Sbjct: 80 --------RLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTL 131
Query: 241 PNWRPRRLGGGLGTTRVGGEEVNQRYSGREQEPSRGP 277
P WRPRRLGGG G + G+ R+ GR++ P R P
Sbjct: 132 PGWRPRRLGGGQGGQKESGQ---LRFGGRDR-PFRKP 164
>sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo
sapiens GN=SNRNP35 PE=1 SV=1
Length = 246
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 115/229 (50%), Gaps = 49/229 (21%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD 180
L +Y P+ V GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 36 LARYVPNK--GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRL------------- 80
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240
RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+
Sbjct: 81 --------RLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTL 132
Query: 241 PNWRPRRLGGGLGTTRVGGEEVNQRYSGREQEPSRGPSRSAEPRIRED------------ 288
W PRRLGGGLG + G+ R+ GR++ P R P P ++ D
Sbjct: 133 KGWIPRRLGGGLGGKKESGQ---LRFGGRDR-PFRKPINL--PVVKNDLYREGKRERRER 186
Query: 289 -----RHGD-RDRERSRERGRD-REREREKS-LELSHDRPRDRDHRDDR 329
RH D R R+R +RGR+ R +ERE + + +D R+RD RDDR
Sbjct: 187 SRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 235
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 110/228 (48%), Gaps = 48/228 (21%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD 180
L +Y P+ V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 36 LARYTPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRL------------- 80
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240
RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+
Sbjct: 81 --------RLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVIDQHEIFVDYELERTL 132
Query: 241 PNWRPRRLGGGLGTTRVGGEEVNQRYSGREQEPSRGPSRSAEPRIREDR----------- 289
W PRRLGGGLG + G+ R+ GR++ P R P P ++ D+
Sbjct: 133 KGWIPRRLGGGLGGKKESGQ---LRFGGRDR-PFRKPINL--PVVKNDQFREGKRERRER 186
Query: 290 ------HGDRDRERSRERGRD-REREREKSLELSH-DRPRDRDHRDDR 329
H D +RGR+ R +ERE + D R+RD RDDR
Sbjct: 187 SRSRERHWDSRMRDHHDRGREKRWQEREPARAWPEGDWERERDFRDDR 234
>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
musculus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 85/166 (51%), Gaps = 29/166 (17%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD 180
L +Y P+ V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 36 LARYVPNK--GVTGDPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRL------------- 80
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240
RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+
Sbjct: 81 --------RLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVIDQHEIFVDYELERTL 132
Query: 241 PNWRPRRLGGGLGTTRVGGEEVNQRYSGRE---QEPSRGPSRSAEP 283
W PRRLGGGLG + G+ R+ GR+ ++P P EP
Sbjct: 133 RGWIPRRLGGGLGGKKESGQ---LRFGGRDRPFRKPINLPVVKNEP 175
>sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus
norvegicus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 85/166 (51%), Gaps = 29/166 (17%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD 180
L +Y P+ V+GDP TLFVARL+ +T E K+K F YG I+RL
Sbjct: 36 LARYVPNK--GVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRL------------- 80
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240
RLV D T +GYAFIEY R + AY+ ADG +D + VD E RT+
Sbjct: 81 --------RLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHEIFVDYELERTL 132
Query: 241 PNWRPRRLGGGLGTTRVGGEEVNQRYSGRE---QEPSRGPSRSAEP 283
W PRRLGGGLG + G+ R+ GR+ ++P P EP
Sbjct: 133 RGWIPRRLGGGLGGKKESGQ---LRFGGRDRPFRKPINLPVVKNEP 175
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 81/157 (51%), Gaps = 27/157 (17%)
Query: 121 LKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRD 180
L +Y P+ V+GDP+ TLFV+RLS +TTE K+K F YG IKR
Sbjct: 36 LSRYVPNK--GVTGDPHLTLFVSRLSPQTTEEKLKEVFSRYGDIKR-------------- 79
Query: 181 GKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240
+RLV D T +GYAFIEY + A++ A+ +D R V VD E R +
Sbjct: 80 -------IRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVIDQREVFVDFELERNL 132
Query: 241 PNWRPRRLGGGLGTTRVGGEEVNQRYSGREQEPSRGP 277
W PRR GGG G + G+ R+ GR++ P R P
Sbjct: 133 KGWIPRRFGGGFGGKKESGQ---LRFGGRDR-PFRKP 165
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 98/166 (59%), Gaps = 25/166 (15%)
Query: 288 DRHGDRDRERSRERGRDRE----------------REREKSLELSHDRPRDRD------- 324
D+ +D E+ RE+ +D+E RE+++ EL R +DRD
Sbjct: 755 DKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAR 814
Query: 325 HRDDRHHRDRDRTRDRERERDRGRERDRDRTRDRDRGRDRGRDHERDREKDRDKERDRDR 384
+D ++ R +D+++E ++G+E+DRD+ R++DR + R +D ++ REKDRDK R++DR
Sbjct: 815 EKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDR 874
Query: 385 TRERERDRDYEVGDPDRDRGYSRDRDSDYDRIDSK-HERDRHGERD 429
+ RE+DR+ ++ + DRD+G +DRD + + K E++R +RD
Sbjct: 875 DKLREKDRE-KIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRD 919
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 88/129 (68%), Gaps = 6/129 (4%)
Query: 292 DRDRERSRERGRDRE----REREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRERERDRG 347
D++ E+ RE+ RD+E RE+++ EL R +D+D ++ +++DR + RE++RD+
Sbjct: 795 DKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKG-QEKDRDKVREKDRDKV 853
Query: 348 RERDRDRTRDRDRGRDRGRDHERDREKDRDKERDRDRTRERERDRDYE-VGDPDRDRGYS 406
R++DRD+ R++DR + R +D ++ REKDR+K R+RDR + RE+DRD E V ++D+
Sbjct: 854 RDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKE 913
Query: 407 RDRDSDYDR 415
R +D D +R
Sbjct: 914 RLKDRDKER 922
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
LF+ L+ ET E ++ F YG I ++ L+ D+ETNK
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVL---------------------LMKDRETNKS 48
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
RG+AFI + D KAA + +G+ LDG+ + V
Sbjct: 49 RGFAFITFESPADAKAAVRDMNGKSLDGKAIKV 81
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Query: 318 DRPRDRDHRDDRHHRDRDRTR-DRERERDRGRERDRDRTRDRDRGRDRGRDHERDREKDR 376
D+P+D++ + D R RD R D+ RER+R ++RDRD+ + RDR +D+ R+ ER+REKDR
Sbjct: 179 DQPKDQESKRDDKDRRRDAERSDKGRERERTKDRDRDKDKSRDREKDKTREKEREREKDR 238
Query: 377 DKERDRDRTRERERDRDYE 395
++E++R+R ++R++ ++ E
Sbjct: 239 NREKERERDKDRDKKKERE 257
>sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1
Length = 461
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 103/285 (36%), Gaps = 72/285 (25%)
Query: 100 ERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
ER AR L LE + E+K P LFV +L+ T + + F
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKP------------PENVLFVCKLNPVTQDEDLHLIFS 269
Query: 160 SYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 219
+G I SC ++ DK T YAFIE+ + +D + AY +
Sbjct: 270 RFGTIL-----SCE----------------VIRDKRTGDSLQYAFIEFENQKDCEQAYFK 308
Query: 220 ADGRKLDGRRVLVDVER--GRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQEPSRGP 277
G +D R+ VD + + +WR N S R +
Sbjct: 309 MQGVLIDDHRIHVDFSQSVSKLSESWR------------------NATISKRSGQ----- 345
Query: 278 SRSAEPRIREDRHGDRDRERSRE-RGRDREREREKSLELSHDR----PRDRDH-RDDRHH 331
R G E+ R+ R D RE+E L D+ PR R + R +
Sbjct: 346 --------RGGFGGVASLEKKRQYRASDNAREKENDYTLVFDKGDKAPRRRSYSRSPQRS 397
Query: 332 RDRDRTRDRERERDRGRERDRDRTRDRDRGRDRGRDHERDREKDR 376
+RDR R RD R+ R R DR R R RD+++ R
Sbjct: 398 SNRDRRASRSPRRDSYRDPYRRRPGDRSHSRSPARGEYRDKDRGR 442
>sp|Q8WUA2|PPIL4_HUMAN Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4
PE=1 SV=1
Length = 492
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 105 IHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPI 164
+ +++ EK A+ A L+ D ++ P LFV +L+ TT+ ++ F +GPI
Sbjct: 208 VEEIKAEKEAKTQAILLEMVGDLPDADIKP-PENVLFVCKLNPVTTDEDLEIIFSRFGPI 266
Query: 165 KRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRK 224
+ SC ++ D +T + YAFIE+ D + A+ + D
Sbjct: 267 R-----SC----------------EVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVL 305
Query: 225 LDGRRVLVDVERG 237
+D RR+ VD +
Sbjct: 306 IDDRRIHVDFSQS 318
>sp|Q4WAQ9|PPIL4_ASPFU Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=cyp6 PE=3 SV=1
Length = 459
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 97/256 (37%), Gaps = 50/256 (19%)
Query: 100 ERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
ER AR L LE + E+K P LFV +L+ T + ++ F
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKP------------PENVLFVCKLNPVTQDEDLQLIFS 269
Query: 160 SYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 219
+GPI SC ++ DK T YAFIE+ + +D + AY +
Sbjct: 270 RFGPIL-----SC----------------EVIRDKRTGDSLQYAFIEFENQKDCEQAYFK 308
Query: 220 ADGRKLDGRRVLVDVERG--RTVPNWRPRRLG-----GGLGTTRVGGEEVNQRY----SG 268
G +D R+ VD + + +WR + GG G V E ++Y +
Sbjct: 309 MQGVLIDDHRIHVDFSQSVSKLSESWRNATISKRSQRGGFGG--VAELEKKRQYRATDNV 366
Query: 269 REQEPSRGPSRSAEPRIREDRHGDRDRERSRERGRDREREREKSLELSHDRPRDRDHRDD 328
REQ+ E R R R + R R ++ L R R RD D
Sbjct: 367 REQDAYGMVFDKGEARRRPVSRERRYSRSPKRSSRRDSRSPKRGLH----RNRYRDRSDS 422
Query: 329 RHHRDRDRTRDRERER 344
R R D RDR RER
Sbjct: 423 RSPRREDSYRDRNRER 438
>sp|Q5ARI5|PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cyp6 PE=3 SV=1
Length = 461
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 68/179 (37%), Gaps = 43/179 (24%)
Query: 100 ERRARIHKLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFE 159
ER AR L LE + E+K P LFV +L+ T + ++ F
Sbjct: 222 EREARAQALTLEMVGDLPFAEVKP------------PENVLFVCKLNPVTQDEDLELIFS 269
Query: 160 SYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 219
+G I SC ++ DK T YAFIE+ +D + AY +
Sbjct: 270 RFGKIL-----SC----------------EVIRDKRTGDSLQYAFIEFESQKDCEQAYFK 308
Query: 220 ADGRKLDGRRVLVDVER--GRTVPNWRPRRLG------GGLGTTRVGGEEVNQRYSGRE 270
G +D R+ VD + + +WR + GG G V G E ++Y E
Sbjct: 309 MQGVLIDDHRIHVDFSQSVSKLSESWRDATVKKRSAQRGGFGG--VAGLEKKRQYRASE 365
>sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 OS=Homo sapiens GN=TJP2 PE=1 SV=2
Length = 1190
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 69/130 (53%), Gaps = 28/130 (21%)
Query: 284 RIREDRHGDRDR--ERSRERGRDREREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRE 341
R R + HG R R E S ERGR ER R R+RD +RDR
Sbjct: 158 RSRLNSHGGRSRSWEDSPERGRPHERARS---------------------RERDLSRDRS 196
Query: 342 RER--DRGRERDRDRTRDRDRGR--DRGRDHERDREKDRDKERDRDRTRERERDRDYE-V 396
R R +RG ++D RTRDR RGR +RG DH+ +DRD++R R R+ +++ +R Y
Sbjct: 197 RGRSLERGLDQDHARTRDRSRGRSLERGLDHDFGPSRDRDRDRSRGRSIDQDYERAYHRA 256
Query: 397 GDPDRDRGYS 406
DPD +R YS
Sbjct: 257 YDPDYERAYS 266
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 29/98 (29%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+++ RLSY E I+R F YG RL+ E +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYG---RLL--------------------------EVDLK 34
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237
GY F+E+ +RD A + +G++L G RV+V+ RG
Sbjct: 35 NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARG 72
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVR 189
P+V G +L V L+Y T+ ++R FE YG + GD V
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV----------GD-----------VY 44
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ D+ T + RG+AF+ + RD + A DG LDGR + V + R
Sbjct: 45 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVR 189
P+V G +L V L+Y T+ ++R FE YG + GD V
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV----------GD-----------VY 44
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ D+ T + RG+AF+ + RD + A DG LDGR + V + R
Sbjct: 45 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 37/119 (31%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+++ RLSY+ E ++R F+ YG I E +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKIL-----------------------------EVDLK 34
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVG 258
GY F+E+ RD A + +G+ L G RV+V+ RG PRR G G+ R G
Sbjct: 35 NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARG-------PRR-DGSYGSGRSG 85
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TE++I+ ES+GP++ LV D+ET
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGF---------------------DLVKDRETGNS 399
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+GYAF Y A +G K+ + + V
Sbjct: 400 KGYAFCVYQDVSVTDIACAALNGIKMGDKTLTV 432
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 285 IREDRHGDRDRERSRERGRDRERE--REKSLELSHD----RPRDRDHRDDRHHRDRDRTR 338
+ DR RDR RS ER RE REK +E S R DR R++R DR
Sbjct: 1192 VAHDRQRKRDRSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERS--DRGERS 1249
Query: 339 DRERERDRGRERDRDRTRDRDRGRDRG----RDHERDREKDRDKERDRDRTRERERDRD 393
DR DRG DR DR DRG R+ ER R K+R+++RDRD +RER R+
Sbjct: 1250 DRGERSDRGERSDRGERSDRGERSDRGERSDREKERSRAKERERDRDRDLKGQRERKRE 1308
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 37/119 (31%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+++ RLSY+ E ++R F+ YG I E +
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKIL-----------------------------EVDLK 34
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVG 258
GY F+E+ RD A + +G+ L G RV+V+ RG PRR G G+ R G
Sbjct: 35 NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARG-------PRR-DGSYGSGRSG 85
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVR 189
P+V G +L V L+Y T+ ++R FE YG + GD V
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV----------GD-----------VY 44
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ D+ T + RG+AF+ + RD + A DG LDGR + V + R
Sbjct: 45 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 50/209 (23%)
Query: 247 RLGGGLGTTRVGGEEVNQRYSGREQEPSRG----PSRSAEP-----RIREDRHGDRDRER 297
+L G +++ +E +R E+ SRG S++ EP + E R ++
Sbjct: 109 QLIGKCCLSKLSSDEAVKRVLAGEKGDSRGRVLRTSKAQEPDNKSVKEEESRTQKEEKRS 168
Query: 298 SRERGRDREREREKSLELSHD-RPRDRDHRDDRHHRDRDRTRDRERERDRGRERDRDRTR 356
S + R E ++ EL D +PR+ ++RD+ + +E +RDR RE DRDR R
Sbjct: 169 SEVKERSSSAEHKQKEELKEDSKPRE---------KERDKEKAKEADRDRHREPDRDRNR 219
Query: 357 DRDRGRDRGR-DHERDR-----------------------EKDRDKERDRDRTRERERDR 392
D +R + R R +RDR EK+R K+RDRD+ ++RER R
Sbjct: 220 DGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRER-R 278
Query: 393 DYEVG----DPDRDRGYSRDRDSDYDRID 417
+ G DPDR++ SRD D + D
Sbjct: 279 KSKNGEHTRDPDREK--SRDADKSEKKAD 305
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 69/151 (45%), Gaps = 40/151 (26%)
Query: 279 RSAEPRIREDRHGDRDRERSRERGRDREREREKSLELSHDRPRDRDHRDDRHHR-DRDRT 337
RS+E + R + +E +E + RE+ER+K DR DRH DRDR
Sbjct: 167 RSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKEADR--------DRHREPDRDRN 218
Query: 338 RDRERERDRGRER-DRDRT-------------------------RDRDRGRDRGRDHERD 371
RD ERE+ R R + DRDR R +DR RD+G+D ER
Sbjct: 219 RDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRERR 278
Query: 372 REKDRDKERDRDRTRERERDR-----DYEVG 397
+ K+ + RD DR + R+ D+ D VG
Sbjct: 279 KSKNGEHTRDPDREKSRDADKSEKKADISVG 309
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TE++++ ES+GP++ G D LV D+ET
Sbjct: 329 IFVGGLPYYFTEAQVRELLESFGPLR--------GFD-------------LVKDRETGNS 367
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+GYAF Y A +G K+ + + V
Sbjct: 368 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTV 400
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TE++++ E++GP++ G D +V DKET
Sbjct: 394 IFVGGLPYYFTEAQVRELLETFGPLR--------GFD-------------IVKDKETGNS 432
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+GYAF Y A +G +L R + V
Sbjct: 433 KGYAFCLYKDGTVTDIACAALNGIQLGDRTLTV 465
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVR 189
P+V G +L V L+Y T+ ++R FE YG + GD V
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV----------GD-----------VY 44
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ D+ T + RG+AF+ + RD + A DG LDGR + V + R
Sbjct: 45 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVR 189
P+V G +L V L+Y T+ ++R FE YG + GD V
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV----------GD-----------VY 44
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ D+ T + RG+AF+ + RD + A DG LDGR + V + R
Sbjct: 45 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVR 189
P+V G +L V L+Y T+ ++R FE YG + GD V
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV----------GD-----------VY 44
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ D+ T + RG+AF+ + RD + A DG LDGR + V + R
Sbjct: 45 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 23/107 (21%)
Query: 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVR 189
P+V G +L V L+Y T+ ++R FE YG + GD V
Sbjct: 8 PDVEG--MTSLKVDNLTYRTSPDTLRRVFEKYGRV----------GD-----------VY 44
Query: 190 LVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
+ D+ T + RG+AF+ + RD + A DG LDGR + V + R
Sbjct: 45 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 91
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TE +I+ ES+GP++ LV D+ET
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGF---------------------NLVKDRETGNS 415
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+GYAF Y A +G K+ + + V
Sbjct: 416 KGYAFCVYQDPSVTDIACAALNGIKMGDKTLTV 448
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 29/98 (29%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+++ RLSY E I+R F YG RL+ N
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYG--------------------------RLLGIDLKN-- 35
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237
GY F+E+ +RD A + +G++L G RV+V+ RG
Sbjct: 36 -GYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARG 72
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TE++++ ES+GP++ LV D+ET
Sbjct: 360 IFVGGLPYYFTEAQVRELLESFGPLRGF---------------------DLVKDRETGNS 398
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+GYAF Y A +G K+ + + V
Sbjct: 399 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTV 431
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TES+I+ ES+G ++ LV D+ET
Sbjct: 343 IFVGGLPYYFTESQIRELLESFGQLRGF---------------------DLVKDRETGNS 381
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV-DVERGRTVPN 242
+GYAF Y A +G K+ + + V +G T PN
Sbjct: 382 KGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRANQGTTQPN 425
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TES+++ ES+G +K LV D+ET
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGF---------------------DLVKDRETGNS 399
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+GYAF Y A +G K+ + + V
Sbjct: 400 KGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+FV L Y TE++++ ES+GP++ G D LV D+ET
Sbjct: 336 IFVGGLPYYFTEAQVRELLESFGPLR--------GFD-------------LVKDRETGNS 374
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLV 232
+GYAF Y A +G K+ + + V
Sbjct: 375 KGYAFCVYQDLNVTDIACAALNGIKMGDKTLTV 407
>sp|Q4IE79|PPIL4_GIBZE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=CYP6 PE=3 SV=2
Length = 485
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKE 195
P LFV +L+ T + ++ F +G I SC ++ D++
Sbjct: 249 PENVLFVCKLNPVTGDEDLELIFGRFGKIL-----SC----------------EVIRDQK 287
Query: 196 TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236
T YAFIEY +AAY + G +D RR+ VD +
Sbjct: 288 TGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIHVDFSQ 328
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 287 EDRHGDRDRERSRE-RGRDREREREKSLELSHDRPRDRDHRDDRHHRDRDRTRDRERERD 345
E R G RS GR RER S E D P + + DR R+RER R+
Sbjct: 2081 EFREGKGHEYRSPAFEGRQRERFEAGSKEKPLDEPEAQGLESRQGRAFEDRRRERERGRN 2140
Query: 346 RGRERDRDRTRDRDRGRDRGRDHERDREKDRDKERDRDRTRE 387
RERD +R+RD DR R+ D RDR +RD+ERD DR +E
Sbjct: 2141 WSRERDWERSRDWDRHRE--WDKGRDRSSNRDRERDNDRAKE 2180
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 339 DRERERDRGRE----RDRDRTRDRDRGRDRGRDHERDREKDRDKE 379
RER+ DR RE RD+D +RD DR R+R + +R+RE DR KE
Sbjct: 2124 SRERDWDRPREWDRHRDKDSSRDWDRNRERSANRDREREADRGKE 2168
>sp|P0C1I6|PPIL4_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar
(strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL
43880) GN=cyp13 PE=3 SV=1
Length = 446
Score = 36.2 bits (82), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 45/158 (28%)
Query: 101 RRARIHKLRLEK-----GAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIK 155
R A+ H L LE AE E LFV +L+ T + ++
Sbjct: 217 REAKAHALTLEMIGDLPFAEVKPPE-----------------NVLFVCKLNPVTRDEDLE 259
Query: 156 REFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215
F +G I +SC ++ D++T YAF+E+ + D +
Sbjct: 260 MIFSRFGLI-----HSC----------------EIIRDRQTGDSLSYAFVEFENKEDAEE 298
Query: 216 AYKQADGRKLDGRRVLVDVER--GRTVPNWRPRRLGGG 251
AY + +D RR+ VD + + +W +R G G
Sbjct: 299 AYFKMQSVLIDDRRIHVDFSQSVSKLHKDWIAKRTGAG 336
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 100/267 (37%), Gaps = 53/267 (19%)
Query: 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKP 199
+F+ L YE TE I F YG I + LV DK+T K
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIV---------------------NINLVRDKKTGKS 76
Query: 200 RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWR-PRRLGGGLGTTRVG 258
+G+ F+ Y R A +G K+ GR + VD V N+R P+ TR
Sbjct: 77 KGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD-----HVANYRAPQESEDVDDVTR-- 129
Query: 259 GEEVNQRYSGREQEPSRGPSRSAEPRIREDRHGDRDRERSRERGRDREREREKSLEL-SH 317
E+ ++ G + PS P S + + + +D++ +++ + ER EL S
Sbjct: 130 --ELQEKGCGAKTPPSSPPEVSEDEDAKVTKKPKKDKKEKKKKKEKEKTERPVQAELPSC 187
Query: 318 DRPRDRDHRDDRHHRDRDRTRDRERERDRGRERDRDRTRDRD-RGRDRGRDHERD----- 371
R + D++ + ++ RER + + D R RGR E +
Sbjct: 188 SRSKTVKETDEQSAKKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGRAEEPEWEAKK 247
Query: 372 ---------------REKDRDKERDRD 383
EK RDK+R R
Sbjct: 248 EKHKHEHKPSSRREGEEKSRDKDRGRS 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,957,919
Number of Sequences: 539616
Number of extensions: 10599421
Number of successful extensions: 112235
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 1550
Number of HSP's that attempted gapping in prelim test: 40177
Number of HSP's gapped (non-prelim): 21297
length of query: 501
length of database: 191,569,459
effective HSP length: 122
effective length of query: 379
effective length of database: 125,736,307
effective search space: 47654060353
effective search space used: 47654060353
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)