Query 010771
Match_columns 501
No_of_seqs 474 out of 3104
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0113 U1 small nuclear ribon 100.0 1.4E-40 3E-45 317.8 26.4 194 40-257 3-200 (335)
2 KOG0107 Alternative splicing f 99.8 5E-18 1.1E-22 152.0 15.9 78 137-240 10-87 (195)
3 PLN03134 glycine-rich RNA-bind 99.8 3.3E-18 7.1E-23 154.4 13.6 85 135-240 32-116 (144)
4 KOG4207 Predicted splicing fac 99.8 5.6E-17 1.2E-21 148.7 18.4 81 137-238 13-93 (256)
5 KOG0415 Predicted peptidyl pro 99.7 3.3E-17 7.1E-22 160.5 13.1 117 107-245 210-326 (479)
6 KOG0121 Nuclear cap-binding pr 99.6 5.5E-16 1.2E-20 132.1 8.3 80 137-237 36-115 (153)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4E-15 8.7E-20 153.6 12.7 82 137-239 269-350 (352)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4.2E-15 9E-20 153.5 10.7 82 136-238 2-83 (352)
9 TIGR01659 sex-lethal sex-letha 99.6 4.5E-15 9.8E-20 152.3 10.3 82 136-238 192-275 (346)
10 TIGR01659 sex-lethal sex-letha 99.6 6.1E-15 1.3E-19 151.4 10.6 83 134-237 104-186 (346)
11 PF00076 RRM_1: RNA recognitio 99.6 7.9E-15 1.7E-19 114.7 8.1 70 140-231 1-70 (70)
12 KOG0122 Translation initiation 99.5 2.6E-14 5.5E-19 134.6 9.6 83 135-238 187-269 (270)
13 KOG0105 Alternative splicing f 99.5 4.4E-14 9.6E-19 127.6 10.5 80 136-239 5-84 (241)
14 KOG0126 Predicted RNA-binding 99.5 1.8E-15 4E-20 136.2 0.7 83 138-241 36-118 (219)
15 TIGR01645 half-pint poly-U bin 99.5 1.2E-13 2.6E-18 149.5 14.5 80 136-236 106-185 (612)
16 KOG0149 Predicted RNA-binding 99.5 5.1E-14 1.1E-18 132.1 9.1 78 137-236 12-89 (247)
17 TIGR01645 half-pint poly-U bin 99.5 8.5E-14 1.8E-18 150.7 11.9 90 136-246 203-292 (612)
18 PLN03120 nucleic acid binding 99.5 2.2E-13 4.8E-18 132.0 10.7 76 137-237 4-79 (260)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.5 3.3E-13 7.2E-18 146.3 11.9 82 135-237 293-374 (509)
20 PF14259 RRM_6: RNA recognitio 99.4 2.6E-13 5.5E-18 106.7 7.7 70 140-231 1-70 (70)
21 PLN03213 repressor of silencin 99.4 2.6E-13 5.7E-18 138.2 9.7 76 136-236 9-86 (759)
22 KOG0148 Apoptosis-promoting RN 99.4 2.8E-13 6E-18 129.2 8.1 82 137-239 62-143 (321)
23 KOG0130 RNA-binding protein RB 99.4 2.9E-13 6.3E-18 116.5 7.0 80 138-238 73-152 (170)
24 TIGR01622 SF-CC1 splicing fact 99.4 5.4E-13 1.2E-17 142.7 10.8 79 137-236 186-264 (457)
25 KOG0125 Ataxin 2-binding prote 99.4 7.3E-13 1.6E-17 129.4 9.1 82 134-238 93-174 (376)
26 KOG0146 RNA-binding protein ET 99.4 1.8E-12 4E-17 123.2 11.3 87 131-238 279-365 (371)
27 KOG4676 Splicing factor, argin 99.4 2.6E-14 5.6E-19 142.0 -1.4 70 137-232 151-220 (479)
28 smart00362 RRM_2 RNA recogniti 99.4 2E-12 4.3E-17 100.1 9.2 72 139-233 1-72 (72)
29 TIGR01622 SF-CC1 splicing fact 99.4 1.3E-12 2.8E-17 139.9 10.6 80 136-237 88-167 (457)
30 KOG0111 Cyclophilin-type pepti 99.4 3.4E-13 7.5E-18 124.9 4.8 83 137-240 10-92 (298)
31 KOG0148 Apoptosis-promoting RN 99.4 2.4E-12 5.1E-17 122.9 10.5 81 133-240 160-240 (321)
32 PLN03121 nucleic acid binding 99.4 1.9E-12 4.1E-17 123.6 9.7 75 137-236 5-79 (243)
33 TIGR01628 PABP-1234 polyadenyl 99.4 1.6E-12 3.4E-17 142.9 10.4 78 139-237 2-79 (562)
34 TIGR01648 hnRNP-R-Q heterogene 99.4 1.9E-12 4.2E-17 139.9 10.4 79 136-236 57-136 (578)
35 COG0724 RNA-binding proteins ( 99.4 2.3E-12 4.9E-17 125.7 10.0 79 137-236 115-193 (306)
36 KOG0131 Splicing factor 3b, su 99.4 9.5E-13 2.1E-17 119.0 6.1 82 134-236 6-87 (203)
37 KOG0108 mRNA cleavage and poly 99.4 1.4E-12 3.1E-17 136.0 8.3 81 138-239 19-99 (435)
38 TIGR01628 PABP-1234 polyadenyl 99.3 4.3E-12 9.2E-17 139.4 10.7 80 136-237 284-363 (562)
39 smart00360 RRM RNA recognition 99.3 6E-12 1.3E-16 97.0 8.5 71 142-233 1-71 (71)
40 TIGR01648 hnRNP-R-Q heterogene 99.3 8.6E-12 1.9E-16 134.9 11.4 76 136-240 232-309 (578)
41 KOG0147 Transcriptional coacti 99.3 3.6E-12 7.8E-17 132.3 7.7 81 136-237 277-357 (549)
42 KOG0117 Heterogeneous nuclear 99.3 9.8E-12 2.1E-16 125.9 10.4 81 135-236 81-162 (506)
43 KOG0145 RNA-binding protein EL 99.3 7.9E-12 1.7E-16 118.6 8.5 85 133-238 37-121 (360)
44 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.5E-16 94.9 9.6 74 139-234 1-74 (74)
45 KOG0114 Predicted RNA-binding 99.3 2.1E-11 4.6E-16 100.5 9.0 77 136-236 17-93 (124)
46 KOG0145 RNA-binding protein EL 99.3 2.9E-11 6.3E-16 114.7 10.7 80 137-237 278-357 (360)
47 KOG0127 Nucleolar protein fibr 99.2 2.1E-11 4.6E-16 126.0 9.1 80 137-237 292-377 (678)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.3E-11 7.2E-16 129.9 10.7 80 134-239 272-352 (481)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3.4E-11 7.4E-16 129.8 10.2 76 136-238 1-78 (481)
50 KOG0124 Polypyrimidine tract-b 99.2 8.8E-12 1.9E-16 123.1 4.5 78 136-234 112-189 (544)
51 KOG0127 Nucleolar protein fibr 99.2 6.6E-11 1.4E-15 122.4 9.2 82 136-239 116-197 (678)
52 KOG0109 RNA-binding protein LA 99.2 4.8E-11 1E-15 115.1 6.7 71 139-238 4-74 (346)
53 smart00361 RRM_1 RNA recogniti 99.2 1.3E-10 2.8E-15 91.8 8.0 61 151-232 2-69 (70)
54 PF13893 RRM_5: RNA recognitio 99.1 2.5E-10 5.4E-15 85.9 7.7 56 154-235 1-56 (56)
55 KOG0144 RNA-binding protein CU 99.1 1.5E-10 3.2E-15 117.0 8.2 80 137-237 34-116 (510)
56 KOG0117 Heterogeneous nuclear 99.1 1.1E-10 2.5E-15 118.3 7.5 72 137-237 259-330 (506)
57 KOG0109 RNA-binding protein LA 99.1 1.4E-10 3E-15 112.0 7.2 78 134-240 75-152 (346)
58 KOG0132 RNA polymerase II C-te 99.1 6.5E-10 1.4E-14 119.3 12.5 82 133-241 417-498 (894)
59 KOG4676 Splicing factor, argin 99.0 3.3E-10 7.2E-15 113.1 6.2 78 138-234 8-85 (479)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.0 8.1E-10 1.7E-14 119.9 9.6 86 135-236 173-258 (509)
61 KOG1548 Transcription elongati 99.0 1.3E-09 2.8E-14 107.7 9.8 89 134-236 131-219 (382)
62 KOG0144 RNA-binding protein CU 99.0 5.5E-10 1.2E-14 112.9 7.1 88 131-239 418-505 (510)
63 KOG4212 RNA-binding protein hn 99.0 2.2E-09 4.9E-14 108.5 11.1 79 137-237 44-123 (608)
64 PF12220 U1snRNP70_N: U1 small 99.0 2.5E-09 5.4E-14 89.3 9.5 89 39-130 2-94 (94)
65 KOG0131 Splicing factor 3b, su 99.0 9.6E-10 2.1E-14 99.7 7.1 85 134-238 93-177 (203)
66 KOG4661 Hsp27-ERE-TATA-binding 99.0 3.6E-09 7.9E-14 109.8 12.1 84 136-240 404-487 (940)
67 KOG0124 Polypyrimidine tract-b 99.0 9.5E-09 2.1E-13 101.9 13.6 82 137-239 210-291 (544)
68 KOG0116 RasGAP SH3 binding pro 99.0 6.5E-09 1.4E-13 108.2 13.0 82 137-240 288-369 (419)
69 KOG4208 Nucleolar RNA-binding 98.8 7.8E-09 1.7E-13 95.8 7.2 81 136-237 48-129 (214)
70 KOG0153 Predicted RNA-binding 98.8 1.1E-08 2.4E-13 101.2 8.5 74 137-237 228-302 (377)
71 KOG4206 Spliceosomal protein s 98.8 1E-08 2.2E-13 96.5 7.7 79 136-238 8-90 (221)
72 KOG0151 Predicted splicing reg 98.8 6.7E-09 1.4E-13 110.6 6.7 85 135-237 171-256 (877)
73 KOG0123 Polyadenylate-binding 98.8 1.1E-08 2.3E-13 106.1 8.0 74 140-237 79-152 (369)
74 KOG0106 Alternative splicing f 98.8 6.6E-09 1.4E-13 98.5 5.6 72 138-238 2-73 (216)
75 KOG4212 RNA-binding protein hn 98.8 1.2E-08 2.5E-13 103.4 6.7 74 136-235 535-608 (608)
76 KOG4209 Splicing factor RNPS1, 98.8 1.3E-08 2.9E-13 98.6 6.7 81 136-238 100-180 (231)
77 KOG4205 RNA-binding protein mu 98.8 6.9E-09 1.5E-13 104.3 4.7 82 136-239 5-86 (311)
78 KOG0226 RNA-binding proteins [ 98.7 2.4E-08 5.2E-13 95.1 7.5 77 137-234 190-266 (290)
79 KOG0110 RNA-binding protein (R 98.7 2.5E-08 5.4E-13 106.8 7.7 79 139-236 517-596 (725)
80 KOG0110 RNA-binding protein (R 98.7 8.7E-09 1.9E-13 110.2 3.8 80 137-237 613-692 (725)
81 KOG4205 RNA-binding protein mu 98.7 3.3E-08 7.2E-13 99.4 7.7 83 136-240 96-178 (311)
82 KOG4660 Protein Mei2, essentia 98.7 3.6E-08 7.9E-13 103.1 8.2 77 129-231 67-143 (549)
83 KOG0123 Polyadenylate-binding 98.7 4E-08 8.7E-13 101.9 7.6 73 139-238 3-75 (369)
84 KOG0120 Splicing factor U2AF, 98.6 1.9E-08 4.2E-13 106.0 4.5 93 124-237 276-368 (500)
85 KOG0533 RRM motif-containing p 98.6 8.7E-08 1.9E-12 92.9 8.1 78 138-237 84-161 (243)
86 KOG0146 RNA-binding protein ET 98.6 7.3E-08 1.6E-12 92.2 6.5 80 136-237 18-100 (371)
87 KOG4454 RNA binding protein (R 98.6 1.8E-08 3.9E-13 93.9 2.1 78 136-236 8-85 (267)
88 KOG1995 Conserved Zn-finger pr 98.5 1.6E-07 3.5E-12 93.9 7.1 95 136-243 65-159 (351)
89 KOG1457 RNA binding protein (c 98.5 1E-06 2.2E-11 82.6 11.2 85 136-240 33-120 (284)
90 PF04059 RRM_2: RNA recognitio 98.4 1.4E-06 3.1E-11 72.8 8.4 78 138-236 2-85 (97)
91 KOG0147 Transcriptional coacti 98.1 1.3E-06 2.9E-11 91.4 3.0 78 137-236 179-256 (549)
92 KOG4210 Nuclear localization s 98.0 4.1E-06 8.9E-11 84.0 4.2 83 136-240 183-266 (285)
93 KOG1457 RNA binding protein (c 98.0 4.2E-06 9.1E-11 78.6 3.8 65 136-225 209-273 (284)
94 KOG2416 Acinus (induces apopto 97.9 2.6E-05 5.7E-10 82.4 8.5 78 133-237 440-521 (718)
95 KOG0106 Alternative splicing f 97.9 1.3E-05 2.9E-10 76.2 5.5 67 137-232 99-165 (216)
96 PF11608 Limkain-b1: Limkain b 97.8 4.4E-05 9.5E-10 61.3 6.3 68 138-236 3-75 (90)
97 COG5175 MOT2 Transcriptional r 97.8 0.00012 2.5E-09 72.7 9.8 84 130-236 107-201 (480)
98 KOG1548 Transcription elongati 97.8 0.00017 3.7E-09 72.0 10.8 96 118-238 246-352 (382)
99 KOG4211 Splicing factor hnRNP- 97.7 7E-05 1.5E-09 77.9 7.4 75 138-237 11-85 (510)
100 KOG4206 Spliceosomal protein s 97.7 0.00014 3.1E-09 68.9 7.6 77 134-236 143-220 (221)
101 KOG1190 Polypyrimidine tract-b 97.6 0.00016 3.5E-09 73.5 8.1 76 137-238 297-373 (492)
102 KOG2314 Translation initiation 97.6 0.00016 3.4E-09 76.3 7.8 77 136-234 57-140 (698)
103 KOG4849 mRNA cleavage factor I 97.6 5.8E-05 1.3E-09 75.1 4.0 75 138-233 81-157 (498)
104 KOG0129 Predicted RNA-binding 97.4 0.0003 6.6E-09 73.7 7.5 70 129-219 362-432 (520)
105 PF08777 RRM_3: RNA binding mo 97.4 0.00016 3.4E-09 61.7 4.2 70 138-234 2-76 (105)
106 KOG4211 Splicing factor hnRNP- 97.2 0.00088 1.9E-08 69.9 7.9 79 135-235 101-179 (510)
107 KOG1855 Predicted RNA-binding 97.2 0.00038 8.3E-09 71.3 4.2 81 134-222 228-308 (484)
108 KOG0105 Alternative splicing f 97.1 0.0028 6.1E-08 58.3 9.0 61 138-226 116-176 (241)
109 KOG2202 U2 snRNP splicing fact 97.1 0.00024 5.2E-09 68.5 1.8 62 152-235 83-145 (260)
110 KOG0120 Splicing factor U2AF, 97.0 0.0015 3.2E-08 69.6 7.2 64 152-236 424-490 (500)
111 KOG1456 Heterogeneous nuclear 96.9 0.006 1.3E-07 61.7 10.3 87 134-246 284-371 (494)
112 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0017 3.8E-08 48.1 4.9 52 138-217 2-53 (53)
113 KOG3152 TBP-binding protein, a 96.9 0.00074 1.6E-08 65.0 3.3 71 138-229 75-157 (278)
114 KOG4307 RNA binding protein RB 96.9 0.0035 7.7E-08 67.8 8.5 75 139-234 869-943 (944)
115 KOG0129 Predicted RNA-binding 96.8 0.0018 3.9E-08 68.0 5.7 62 137-220 259-326 (520)
116 PF08952 DUF1866: Domain of un 96.8 0.0063 1.4E-07 54.4 8.3 73 134-236 24-105 (146)
117 KOG0112 Large RNA-binding prot 96.8 0.0015 3.2E-08 72.6 5.1 76 135-237 453-530 (975)
118 KOG0112 Large RNA-binding prot 96.7 0.0015 3.2E-08 72.6 4.5 79 136-236 371-449 (975)
119 KOG1190 Polypyrimidine tract-b 96.7 0.0026 5.7E-08 64.9 5.9 79 134-237 411-490 (492)
120 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0083 1.8E-07 50.6 7.7 82 138-235 7-89 (100)
121 KOG2253 U1 snRNP complex, subu 96.5 0.0023 4.9E-08 69.1 4.2 69 137-235 40-108 (668)
122 KOG1456 Heterogeneous nuclear 96.5 0.0071 1.5E-07 61.2 7.3 77 136-238 119-199 (494)
123 KOG1996 mRNA splicing factor [ 96.4 0.0081 1.7E-07 59.0 6.9 63 152-235 301-364 (378)
124 KOG1365 RNA-binding protein Fu 96.3 0.016 3.5E-07 58.8 8.2 80 137-235 280-359 (508)
125 KOG0128 RNA-binding protein SA 96.0 0.0046 9.9E-08 68.5 3.3 78 138-237 737-814 (881)
126 KOG0128 RNA-binding protein SA 95.9 0.00078 1.7E-08 74.4 -3.3 68 138-227 668-735 (881)
127 KOG2135 Proteins containing th 95.7 0.023 4.9E-07 59.3 6.6 74 138-239 373-447 (526)
128 KOG0115 RNA-binding protein p5 95.6 0.014 3.1E-07 56.4 4.3 77 138-236 32-112 (275)
129 PF08675 RNA_bind: RNA binding 95.4 0.047 1E-06 44.1 6.0 53 140-221 11-63 (87)
130 KOG2193 IGF-II mRNA-binding pr 95.2 0.018 3.8E-07 59.3 3.8 72 138-236 2-74 (584)
131 PF15023 DUF4523: Protein of u 95.1 0.091 2E-06 46.7 7.3 77 131-236 80-160 (166)
132 KOG4307 RNA binding protein RB 95.1 0.03 6.5E-07 60.9 5.1 79 136-235 433-511 (944)
133 KOG2068 MOT2 transcription fac 95.0 0.017 3.7E-07 58.1 3.0 79 137-236 77-161 (327)
134 KOG2318 Uncharacterized conser 94.3 0.084 1.8E-06 56.5 6.1 103 132-235 169-303 (650)
135 KOG4660 Protein Mei2, essentia 94.3 0.053 1.2E-06 57.8 4.6 49 188-236 419-471 (549)
136 PF10309 DUF2414: Protein of u 94.1 0.23 5E-06 38.0 6.7 53 138-220 6-62 (62)
137 KOG1365 RNA-binding protein Fu 93.7 0.17 3.6E-06 51.7 6.7 75 139-232 163-237 (508)
138 KOG4285 Mitotic phosphoprotein 93.7 0.47 1E-05 47.2 9.6 70 138-236 198-268 (350)
139 PF03880 DbpA: DbpA RNA bindin 93.1 0.31 6.6E-06 38.6 6.2 72 139-235 2-74 (74)
140 KOG4210 Nuclear localization s 92.4 0.09 2E-06 52.9 2.7 83 136-239 87-169 (285)
141 KOG4574 RNA-binding protein (c 90.8 0.45 9.7E-06 53.3 6.0 74 138-238 299-374 (1007)
142 PF07576 BRAP2: BRCA1-associat 90.4 1.8 3.9E-05 37.2 8.3 67 138-227 14-81 (110)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 90.4 0.28 6.2E-06 45.8 3.6 82 138-237 8-97 (176)
144 PF04847 Calcipressin: Calcipr 90.3 1.1 2.3E-05 42.2 7.4 60 151-237 9-70 (184)
145 KOG2888 Putative RNA binding p 90.2 0.25 5.4E-06 49.5 3.2 9 151-159 129-137 (453)
146 KOG2888 Putative RNA binding p 89.6 0.18 4E-06 50.4 1.8 14 148-161 168-181 (453)
147 KOG0804 Cytoplasmic Zn-finger 88.8 1.4 3E-05 46.2 7.5 68 137-227 74-142 (493)
148 KOG4207 Predicted splicing fac 88.0 6.4 0.00014 37.4 10.6 23 203-225 61-85 (256)
149 KOG2591 c-Mpl binding protein, 86.7 0.84 1.8E-05 48.9 4.5 67 137-231 175-245 (684)
150 PF11767 SET_assoc: Histone ly 83.6 5.5 0.00012 30.9 6.7 55 148-232 11-65 (66)
151 COG5638 Uncharacterized conser 79.8 11 0.00024 39.2 9.1 102 133-234 142-292 (622)
152 PRK11634 ATP-dependent RNA hel 78.4 29 0.00062 39.1 12.9 74 139-237 488-562 (629)
153 KOG2891 Surface glycoprotein [ 78.0 0.88 1.9E-05 44.7 0.7 38 134-171 146-195 (445)
154 KOG4454 RNA binding protein (R 77.5 0.3 6.6E-06 46.4 -2.5 71 137-229 80-154 (267)
155 KOG4483 Uncharacterized conser 76.9 39 0.00084 35.3 11.9 58 134-218 388-445 (528)
156 KOG2548 SWAP mRNA splicing reg 76.2 1.2 2.5E-05 47.5 1.0 31 40-70 67-97 (653)
157 KOG4410 5-formyltetrahydrofola 75.9 7.7 0.00017 38.5 6.4 27 138-164 331-357 (396)
158 smart00596 PRE_C2HC PRE_C2HC d 70.8 11 0.00023 29.5 4.9 61 152-236 2-63 (69)
159 PF07530 PRE_C2HC: Associated 68.4 12 0.00026 29.2 4.8 62 152-237 2-64 (68)
160 PF03468 XS: XS domain; Inter 67.5 4.7 0.0001 35.0 2.6 55 139-217 10-74 (116)
161 KOG2295 C2H2 Zn-finger protein 66.9 0.64 1.4E-05 49.8 -3.4 74 137-231 231-304 (648)
162 KOG4019 Calcineurin-mediated s 65.4 5.6 0.00012 37.0 2.8 76 135-237 8-89 (193)
163 KOG0151 Predicted splicing reg 63.9 6.4 0.00014 43.7 3.4 10 225-234 633-642 (877)
164 KOG0226 RNA-binding proteins [ 63.8 4.6 0.0001 39.5 2.0 73 139-233 98-173 (290)
165 KOG0113 U1 small nuclear ribon 63.7 19 0.00041 36.1 6.3 11 205-215 109-119 (335)
166 KOG0835 Cyclin L [General func 59.7 13 0.00029 37.7 4.5 6 72-77 91-96 (367)
167 KOG0835 Cyclin L [General func 58.6 12 0.00027 37.9 4.1 6 203-208 176-181 (367)
168 KOG2193 IGF-II mRNA-binding pr 56.0 1.1 2.4E-05 46.5 -3.7 75 138-236 81-155 (584)
169 KOG3702 Nuclear polyadenylated 51.8 8.1 0.00018 42.6 1.7 73 138-232 512-584 (681)
170 COG0724 RNA-binding proteins ( 50.4 22 0.00047 33.7 4.4 33 134-166 222-254 (306)
171 KOG0107 Alternative splicing f 49.0 79 0.0017 29.5 7.3 19 207-225 57-77 (195)
172 COG5178 PRP8 U5 snRNP spliceos 48.6 16 0.00034 43.0 3.3 33 134-166 69-101 (2365)
173 PF15513 DUF4651: Domain of un 46.5 36 0.00078 26.1 3.9 17 152-168 9-25 (62)
174 PF10567 Nab6_mRNP_bdg: RNA-re 41.7 42 0.00092 33.7 4.7 77 138-235 16-105 (309)
175 PF09707 Cas_Cas2CT1978: CRISP 41.0 53 0.0012 26.9 4.5 48 137-208 25-72 (86)
176 TIGR01873 cas_CT1978 CRISPR-as 38.7 30 0.00065 28.4 2.7 24 137-160 25-48 (87)
177 KOG4365 Uncharacterized conser 37.1 5.2 0.00011 42.0 -2.4 78 138-237 4-81 (572)
178 KOG4246 Predicted DNA-binding 35.6 16 0.00036 41.3 0.9 10 138-147 146-155 (1194)
179 KOG4008 rRNA processing protei 35.1 43 0.00093 32.6 3.5 33 136-168 39-71 (261)
180 PRK11558 putative ssRNA endonu 30.5 81 0.0017 26.5 4.0 50 137-210 27-76 (97)
181 KOG4246 Predicted DNA-binding 29.8 27 0.00059 39.7 1.4 13 194-206 152-164 (1194)
182 COG5178 PRP8 U5 snRNP spliceos 29.0 33 0.00072 40.5 2.0 10 138-147 108-117 (2365)
183 KOG4840 Predicted hydrolases o 28.3 88 0.0019 30.5 4.4 39 198-236 77-116 (299)
184 PRK11901 hypothetical protein; 28.0 4.3E+02 0.0094 27.1 9.4 59 138-222 246-306 (327)
185 PF00403 HMA: Heavy-metal-asso 27.5 1.9E+02 0.0041 21.2 5.4 54 139-219 1-58 (62)
186 KOG1295 Nonsense-mediated deca 27.1 58 0.0013 33.9 3.2 68 138-225 8-77 (376)
187 PF08206 OB_RNB: Ribonuclease 27.1 36 0.00077 25.4 1.3 38 198-236 6-44 (58)
188 COG0030 KsgA Dimethyladenosine 25.2 72 0.0016 31.7 3.4 30 137-166 95-124 (259)
189 KOG0132 RNA polymerase II C-te 22.4 1.1E+02 0.0024 34.8 4.4 7 9-15 89-95 (894)
190 PF03439 Spt5-NGN: Early trans 20.9 1E+02 0.0022 24.9 2.9 28 197-224 41-68 (84)
191 PRK14548 50S ribosomal protein 20.7 3.7E+02 0.0081 21.8 6.1 56 140-219 23-80 (84)
No 1
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=317.77 Aligned_cols=194 Identities=64% Similarity=1.038 Sum_probs=178.1
Q ss_pred CCCChhhhcccCCCCCCCCCCC----CCCCCCCCCCChhHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 010771 40 TGLTANLLKLFEPRAPLEYKPP----PEKRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGAE 115 (501)
Q Consensus 40 ~~~~~~~l~lf~p~pp~~~~pp----~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (501)
+-|||++|+||+|.|||+|+|| +....++++++|++||..|+.+.+ +|+....++..+..++....++++.+.
T Consensus 3 ~~lp~nllaLF~pRpPl~y~pP~d~~p~kr~~~~~tGvA~~~~~~~~~~d---~p~~~p~~t~~e~~er~~~~k~e~~~~ 79 (335)
T KOG0113|consen 3 QFLPPNLLALFAPRPPLPYLPPTDKLPHKRKTNPYTGVAQYLSTFEDPKD---APPKFPVETPEEPLERGRREKTEKIPH 79 (335)
T ss_pred ccCCccHHHhcCCCCCcccCCccccChhhccCCCcccHHHHHHhhcCccc---CCCcCcccchhhHHHhhhhhhhhhhHH
Confidence 4578899999999999999999 556677799999999999887655 444445667777888888888888888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCC
Q 010771 116 KAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKE 195 (501)
Q Consensus 116 ~~~~~~~~~~p~~~~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~ 195 (501)
++...++.|+|.++++++++|.+||||+.|+++|+|..|+..|+.||+|+. |.||.|+.
T Consensus 80 ~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikr---------------------irlV~d~v 138 (335)
T KOG0113|consen 80 KLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKR---------------------IRLVRDKV 138 (335)
T ss_pred HHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCccee---------------------EEEeeecc
Confidence 899999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCceEEEEEechhhHHHHHHhcCCceECCeEEEEEEecCCCCCCCCCCCCCCCCCcccc
Q 010771 196 TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRV 257 (501)
Q Consensus 196 t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~~~~~~~~~gg~~~~~~~ 257 (501)
||+++|||||+|+++.++..|++..+|.+|+|+.|.|++..+++++.|.|+++|||+|+...
T Consensus 139 TgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~PRRLGGGLGg~r~ 200 (335)
T KOG0113|consen 139 TGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLPRRLGGGLGGRRY 200 (335)
T ss_pred cCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccccccccccccccCCcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999988774
No 2
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=5e-18 Score=152.03 Aligned_cols=78 Identities=29% Similarity=0.660 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.+.||||||+..+++.+|+.+|..||+|..||| .. .+.|||||||+++.+|+.|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWv---------------------Ar-----nPPGfAFVEFed~RDA~DA 63 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWV---------------------AR-----NPPGFAFVEFEDPRDAEDA 63 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEE---------------------ee-----cCCCceEEeccCcccHHHH
Confidence 578999999999999999999999999999663 22 3679999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+..|+|..|+|..|+|+++.+.+.
T Consensus 64 vr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 64 VRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred HhhcCCccccCceEEEEeecCCcc
Confidence 999999999999999999987664
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=3.3e-18 Score=154.40 Aligned_cols=85 Identities=26% Similarity=0.576 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
...++|||+|||+.+++++|+++|++||.|.. |.|+.+..|++++|||||+|.+.++|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~---------------------v~i~~d~~tg~~kGfaFV~F~~~e~A~ 90 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVD---------------------AKVIVDRETGRSRGFGFVNFNDEGAAT 90 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE---------------------EEEEecCCCCCcceEEEEEECCHHHHH
Confidence 34678999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
.||..|||..|+|+.|+|+|+..++.
T Consensus 91 ~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 91 AAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred HHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 99999999999999999999987654
No 4
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.76 E-value=5.6e-17 Score=148.65 Aligned_cols=81 Identities=35% Similarity=0.616 Sum_probs=77.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|-|-||.+.|+.++|..+|++||.|.. |.|..|..|+.++|||||-|....+|+.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgD---------------------VyIPrdr~Tr~sRgFaFVrf~~k~daedA 71 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGD---------------------VYIPRDRYTRQSRGFAFVRFHDKRDAEDA 71 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccc---------------------eecccccccccccceeEEEeeecchHHHH
Confidence 568999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+.+|+|.+|+|+.|.|++|+-.
T Consensus 72 ~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 72 LDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred HHhhcceeeccceeeehhhhcC
Confidence 9999999999999999999743
No 5
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.3e-17 Score=160.49 Aligned_cols=117 Identities=28% Similarity=0.438 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCc
Q 010771 107 KLRLEKGAEKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDE 186 (501)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
....++.++..|..|..++..+++.+. +|.+.|||..|++.||.++|.-||+.||+|.+
T Consensus 210 e~~~e~ea~~~A~iLEmvGDlpdAd~~-PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~s-------------------- 268 (479)
T KOG0415|consen 210 EVLAEKEAKAQAVILEMVGDLPDADVK-PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVS-------------------- 268 (479)
T ss_pred HHHHHHHHHhhHhHHHHhcCCcccccC-CCcceEEEEecCCcccccchhhHHhhccccee--------------------
Confidence 334555666666777777666655544 46679999999999999999999999999999
Q ss_pred eEEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceECCeEEEEEEecCCCCCCCCC
Q 010771 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRP 245 (501)
Q Consensus 187 ~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~~~~~~ 245 (501)
|.|+.|..||.+..||||+|.+.+++++|+-.|++..|+.+.|.|+|+.......|++
T Consensus 269 -ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~ 326 (479)
T KOG0415|consen 269 -CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQ 326 (479)
T ss_pred -eeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999998665555643
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=5.5e-16 Score=132.10 Aligned_cols=80 Identities=33% Similarity=0.573 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
++|||||||++-|+|++|.++|+++|+|.. |.|-.|+.+..+.|||||+|.+.++|+.|
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irr---------------------iiMGLdr~kktpCGFCFVeyy~~~dA~~A 94 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRR---------------------IIMGLDRFKKTPCGFCFVEYYSRDDAEDA 94 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchhe---------------------eEeccccCCcCccceEEEEEecchhHHHH
Confidence 469999999999999999999999999999 88888999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecC
Q 010771 217 YKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|+.++|+.|+.++|.|+|..+
T Consensus 95 lryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 95 LRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred HHHhccCcccccceeeecccc
Confidence 999999999999999999865
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.61 E-value=4e-15 Score=153.62 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=77.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|||+|||+.+++++|.++|++||.|.. |+|+.|..|+.++|||||+|.+.++|..|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~---------------------v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQN---------------------VKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEE---------------------EEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 347999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|..|||..|+|+.|+|.|+..+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999987653
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.59 E-value=4.2e-15 Score=153.47 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+++++|+++|+.||+|.. |+|+.++.+|.++|||||+|.+.++|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~---------------------v~i~~d~~~g~s~g~afV~f~~~~~A~~ 60 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIES---------------------CKLVRDKVTGQSLGYGFVNYVRPEDAEK 60 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEE---------------------EEEEEcCCCCccceEEEEEECcHHHHHH
Confidence 4579999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
||..|||..|.|+.|.|.|+.+.
T Consensus 61 Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 61 AVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred HHhhcccEEECCeeEEEEeeccc
Confidence 99999999999999999998753
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=4.5e-15 Score=152.34 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+.||+++|+++|++||.|.. |.|+.+..|++++|||||+|.+.++|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~---------------------v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 250 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQ---------------------KNILRDKLTGTPRGVAFVRFNKREEAQE 250 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEE---------------------EEEeecCCCCccceEEEEEECCHHHHHH
Confidence 3568999999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHhcCCceECC--eEEEEEEecCC
Q 010771 216 AYKQADGRKLDG--RRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~G--r~i~V~~a~~~ 238 (501)
||..||+..|.| ++|.|.|+...
T Consensus 251 Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 251 AISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999876 78999998754
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=6.1e-15 Score=151.38 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
....++|||+|||+++|+++|+++|+.||+|+. |+|+.|..|+.++|||||+|.+.++|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~---------------------v~i~~d~~tg~srGyaFVeF~~~e~A 162 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINT---------------------CRIMRDYKTGYSFGYAFVDFGSEADS 162 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEecCCCCccCcEEEEEEccHHHH
Confidence 345689999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+.||..|+|..|.+++|+|.|+.+
T Consensus 163 ~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 163 QRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred HHHHHHcCCCccCCceeeeecccc
Confidence 999999999999999999999864
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=7.9e-15 Score=114.66 Aligned_cols=70 Identities=29% Similarity=0.697 Sum_probs=66.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHh
Q 010771 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 219 (501)
Q Consensus 140 lfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~ 219 (501)
|||+|||.++|+++|.++|+.||.|.. +.|+.+ .++..++||||+|.+.++|+.|+..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~---------------------~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIES---------------------IKVMRN-SSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEE---------------------EEEEEE-TTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccc---------------------cccccc-ccccccceEEEEEcCHHHHHHHHHH
Confidence 899999999999999999999999988 777776 6788999999999999999999999
Q ss_pred cCCceECCeEEE
Q 010771 220 ADGRKLDGRRVL 231 (501)
Q Consensus 220 l~g~~l~Gr~i~ 231 (501)
|+|..|+|+.|+
T Consensus 59 l~g~~~~~~~ir 70 (70)
T PF00076_consen 59 LNGKKINGRKIR 70 (70)
T ss_dssp HTTEEETTEEEE
T ss_pred cCCCEECccCcC
Confidence 999999999985
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.6e-14 Score=134.58 Aligned_cols=83 Identities=30% Similarity=0.466 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
+...||-|.||+.++++.+|+++|..||.|.. |.|+.|+.||.++|||||.|.+.++|.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r---------------------vylardK~TG~~kGFAFVtF~sRddA~ 245 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITR---------------------VYLARDKETGLSKGFAFVTFESRDDAA 245 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccce---------------------eEEEEccccCcccceEEEEEecHHHHH
Confidence 34578999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+||..|||.-++.-.|.|+|+++.
T Consensus 246 rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 246 RAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHHHHccCcccceEEEEEEecCCC
Confidence 999999999999999999999864
No 13
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=4.4e-14 Score=127.62 Aligned_cols=80 Identities=30% Similarity=0.529 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||||||..|.+.+|+.+|-+||.|.. |.|.. .-.+.+||||+|++..+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~---------------------ieLK~---r~g~ppfafVeFEd~RDAeD 60 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIRE---------------------IELKN---RPGPPPFAFVEFEDPRDAED 60 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEE---------------------EEecc---CCCCCCeeEEEecCccchhh
Confidence 4579999999999999999999999999998 55532 13356799999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||..-+|..++|..|+|+++.+..
T Consensus 61 AiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 61 AIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred hhhcccccccCcceEEEEeccCCC
Confidence 999999999999999999998654
No 14
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.8e-15 Score=136.25 Aligned_cols=83 Identities=34% Similarity=0.555 Sum_probs=77.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.-|||||||++.||.+|.-+|++||+|.. |.|+.|+.||+++||||+.|+++.+..-|+
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vd---------------------inLiRDk~TGKSKGFaFLcYEDQRSTILAV 94 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVD---------------------INLIRDKKTGKSKGFAFLCYEDQRSTILAV 94 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEE---------------------EEEEecCCCCcccceEEEEecCccceEEEE
Confidence 47999999999999999999999999999 999999999999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCCCCC
Q 010771 218 KQADGRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~~~~ 241 (501)
..|||..|.|+.|+|++......+
T Consensus 95 DN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 95 DNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred eccCCceecceeEEeeecccccCC
Confidence 999999999999999986544443
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=1.2e-13 Score=149.46 Aligned_cols=80 Identities=33% Similarity=0.608 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++||||||++.+++++|+++|..||+|.. |.|+.|+.|++++|||||+|.+.++|+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~s---------------------V~I~~D~~TgkskGfAFVeF~s~e~A~~ 164 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKS---------------------INMSWDPATGKHKGFAFVEYEVPEAAQL 164 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEE---------------------EEEeecCCCCCcCCeEEEEeCcHHHHHH
Confidence 4579999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEec
Q 010771 216 AYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
||..|||..|+|+.|+|.+..
T Consensus 165 Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 165 ALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred HHHhcCCeEEecceeeecccc
Confidence 999999999999999998643
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5.1e-14 Score=132.14 Aligned_cols=78 Identities=28% Similarity=0.612 Sum_probs=72.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++||||+|+|+|..+.|+.+|++||+|.+ ..||+|+.|++++|||||+|.+.++|..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~e---------------------avvitd~~t~rskGyGfVTf~d~~aa~rA 70 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVE---------------------AVVITDKNTGRSKGYGFVTFRDAEAATRA 70 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEE---------------------EEEEeccCCccccceeeEEeecHHHHHHH
Confidence 467999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEec
Q 010771 217 YKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~ 236 (501)
|+. -+-.|+|++.+|.+|-
T Consensus 71 c~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 71 CKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred hcC-CCCcccccccccchhh
Confidence 965 4567999999999875
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=8.5e-14 Score=150.66 Aligned_cols=90 Identities=23% Similarity=0.378 Sum_probs=82.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+||++.+++++|+++|+.||.|.+ |.|+.+..++.++|||||+|.+.++|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~s---------------------vrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVK---------------------CQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeE---------------------EEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 3578999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCCCCCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~~~~~~~ 246 (501)
||..|||..|+|+.|+|.++...+...|.+.
T Consensus 262 AI~amNg~elgGr~LrV~kAi~pP~~~~~pa 292 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTPPDALLQPA 292 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCCccccCCCC
Confidence 9999999999999999999987665555443
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.2e-13 Score=131.98 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+.. .+|||||+|.+.++|+.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~---------------------V~I~~d~~---~~GfAFVtF~d~eaAe~A 59 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEY---------------------VEMQSENE---RSQIAYVTFKDPQGAETA 59 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeecCC---CCCEEEEEeCcHHHHHHH
Confidence 469999999999999999999999999999 88877643 578999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecC
Q 010771 217 YKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~ 237 (501)
| .|+|..|.|+.|.|.++..
T Consensus 60 l-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 60 L-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred H-HhcCCeeCCceEEEEeccC
Confidence 9 5999999999999999864
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.45 E-value=3.3e-13 Score=146.27 Aligned_cols=82 Identities=26% Similarity=0.423 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
+..++|||+|||+.+|+++|+++|+.||.|.. |.|+.+..+|.++|||||+|.+.++|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~---------------------~~~~~~~~~g~~~g~afv~f~~~~~a~ 351 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKA---------------------FNLIKDIATGLSKGYAFCEYKDPSVTD 351 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 34579999999999999999999999999998 889999899999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
.||..|||..|+|+.|.|.++..
T Consensus 352 ~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 352 VAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred HHHHHcCCCEECCeEEEEEECcc
Confidence 99999999999999999999864
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=2.6e-13 Score=106.74 Aligned_cols=70 Identities=33% Similarity=0.765 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHh
Q 010771 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 219 (501)
Q Consensus 140 lfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~ 219 (501)
|||+|||+.+++++|.++|+.||.|.. |.+..++. +.++++|||+|.+.++|..|+..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~---------------------v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~ 58 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEK---------------------VRLIKNKD-GQSRGFAFVEFSSEEDAKRALEL 58 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEE---------------------EEEEESTT-SSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcce---------------------EEEEeeec-cccCCEEEEEeCCHHHHHHHHHH
Confidence 799999999999999999999999988 88888876 88999999999999999999999
Q ss_pred cCCceECCeEEE
Q 010771 220 ADGRKLDGRRVL 231 (501)
Q Consensus 220 l~g~~l~Gr~i~ 231 (501)
++|..|+|+.|+
T Consensus 59 ~~~~~~~g~~l~ 70 (70)
T PF14259_consen 59 LNGKEIDGRKLR 70 (70)
T ss_dssp HTTEEETTEEEE
T ss_pred CCCcEECCEEcC
Confidence 999999999885
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=2.6e-13 Score=138.19 Aligned_cols=76 Identities=17% Similarity=0.375 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech--hhH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT--RDM 213 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~--~~a 213 (501)
...+||||||++.|++++|..+|..||.|.. |.|+ +.|| +|||||+|... .++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkd---------------------VEIp--RETG--RGFAFVEMssdddaEe 63 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDA---------------------VEFV--RTKG--RSFAYIDFSPSSTNSL 63 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEe--cccC--CceEEEEecCCcHHHH
Confidence 4568999999999999999999999999999 8887 4567 89999999987 789
Q ss_pred HHHHHhcCCceECCeEEEEEEec
Q 010771 214 KAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
.+||..|||..|.|+.|+|..|+
T Consensus 64 eKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 64 TKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHHHHhcCCeecCceeEEeecc
Confidence 99999999999999999999876
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.8e-13 Score=129.19 Aligned_cols=82 Identities=24% Similarity=0.495 Sum_probs=78.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.--||||-|..+|+.+.|++.|.+||+|.+ ++||.|..|++++|||||.|.+.++|+.|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~---------------------akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSD---------------------AKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhcccccccc---------------------ceEeecccCCcccceeEEeccchHHHHHH
Confidence 446999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|..|||..|+++.|+..||.-++
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHhCCeeeccceeeccccccCc
Confidence 99999999999999999998655
No 23
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.9e-13 Score=116.49 Aligned_cols=80 Identities=34% Similarity=0.516 Sum_probs=76.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
-.|||.++..++|+++|...|..||+|+. |.|-.|..||-.+|||+|+|.+.+.|++||
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKN---------------------ihLNLDRRtGy~KGYaLvEYet~keAq~A~ 131 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKN---------------------IHLNLDRRTGYVKGYALVEYETLKEAQAAI 131 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccc---------------------eeeccccccccccceeeeehHhHHHHHHHH
Confidence 47999999999999999999999999999 888889999999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCC
Q 010771 218 KQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
..|||..|.|..|.|+|+...
T Consensus 132 ~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 132 DALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred HhccchhhhCCceeEEEEEec
Confidence 999999999999999999754
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.42 E-value=5.4e-13 Score=142.73 Aligned_cols=79 Identities=30% Similarity=0.633 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+..+|.++|||||+|.+.++|.+|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~---------------------v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIED---------------------VQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 679999999999999999999999999999 88999998999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEec
Q 010771 217 YKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~ 236 (501)
|..|||..|.|+.|.|.|+.
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHhcCCcEECCEEEEEEEcc
Confidence 99999999999999999976
No 25
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=7.3e-13 Score=129.40 Aligned_cols=82 Identities=21% Similarity=0.482 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+..+.|+|.|||+...+-||..+|++||+|.+ |.||.+. .-+||||||+|++.++|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld---------------------VEIIfNE--RGSKGFGFVTmen~~da 149 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLD---------------------VEIIFNE--RGSKGFGFVTMENPADA 149 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceee---------------------EEEEecc--CCCCccceEEecChhhH
Confidence 345578999999999999999999999999999 8888763 55899999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
++|-.+|+|+.|.|++|.|..|+.+
T Consensus 150 dRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 150 DRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHhhcceeeceEEEEeccchh
Confidence 9999999999999999999998764
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.8e-12 Score=123.24 Aligned_cols=87 Identities=21% Similarity=0.416 Sum_probs=81.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech
Q 010771 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT 210 (501)
Q Consensus 131 ~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~ 210 (501)
...++..|+|||-.||.+..+.+|..+|-.||.|.+ .+|..|+.|+.+++||||.|.++
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivS---------------------aKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVS---------------------AKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceee---------------------eeeeehhccccccceeeEecCCc
Confidence 345677899999999999999999999999999999 88999999999999999999999
Q ss_pred hhHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 211 RDMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.+++.||..|||+.|+-++|+|.+.+++
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 9999999999999999999999987654
No 27
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.39 E-value=2.6e-14 Score=142.05 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..||+|++|+..+-..+|.++|..+|+|..+. + ..+....+|.|+|....+...|
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~---------------------~----ask~~s~~c~~sf~~qts~~ha 205 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAH---------------------T----ASKSRSSSCSHSFRKQTSSKHA 205 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhh---------------------h----hccCCCcchhhhHhhhhhHHHH
Confidence 46899999999999999999999999999843 3 3355566888999999999999
Q ss_pred HHhcCCceECCeEEEE
Q 010771 217 YKQADGRKLDGRRVLV 232 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V 232 (501)
+ .++|..+.-....+
T Consensus 206 l-r~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 206 L-RSHGRERKRQHSRR 220 (479)
T ss_pred H-Hhcchhhhhhhhhh
Confidence 9 47888776443333
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2e-12 Score=100.13 Aligned_cols=72 Identities=38% Similarity=0.702 Sum_probs=66.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
+|||+|||..+++++|..+|..||.|.. +.++.+. +.+.|+|||+|.+.++|+.|+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~---------------------~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~ 57 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES---------------------VKIPKDT--GKSKGFAFVEFESEEDAEKAIE 57 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE---------------------EEEecCC--CCCCceEEEEeCCHHHHHHHHH
Confidence 5999999999999999999999999998 7777665 6788999999999999999999
Q ss_pred hcCCceECCeEEEEE
Q 010771 219 QADGRKLDGRRVLVD 233 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~ 233 (501)
.|+|..|.|+.|.|.
T Consensus 58 ~~~~~~~~~~~i~v~ 72 (72)
T smart00362 58 ALNGTKLGGRPLRVE 72 (72)
T ss_pred HhCCcEECCEEEeeC
Confidence 999999999999873
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.38 E-value=1.3e-12 Score=139.87 Aligned_cols=80 Identities=23% Similarity=0.487 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..+||||+|||+.+++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~---------------------v~i~~d~~~~~skg~afVeF~~~e~A~~ 146 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRD---------------------VQCIKDRNSRRSKGVAYVEFYDVESVIK 146 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEeecCCCCCcceEEEEEECCHHHHHH
Confidence 4679999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|| .|+|..|.|+.|.|.++..
T Consensus 147 Al-~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 147 AL-ALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred HH-HhCCCEECCeeeEEeecch
Confidence 99 5999999999999998653
No 30
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.4e-13 Score=124.88 Aligned_cols=83 Identities=30% Similarity=0.543 Sum_probs=79.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.+|||||+|..+|++.-|...|-.||.|+. |.|+.|..+++.+|||||+|...++|.+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~d---------------------IqiPlDyesqkHRgFgFVefe~aEDAaaA 68 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKD---------------------IQIPLDYESQKHRGFGFVEFEEAEDAAAA 68 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhh---------------------cccccchhcccccceeEEEeeccchhHHH
Confidence 469999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|..||+.+|.|+.|+|.+|++...
T Consensus 69 iDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 69 IDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred hhcCchhhhcceeEEEeecCCccc
Confidence 999999999999999999987554
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.4e-12 Score=122.91 Aligned_cols=81 Identities=23% Similarity=0.461 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
+.+.++|||||||+..+|+++|++.|+.||.|.+ |+|..+ +|||||.|.+.|+
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E---------------------VRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE---------------------VRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceE---------------------EEEecc------cceEEEEecchhh
Confidence 3456789999999999999999999999999999 777665 5999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|..||..|||++|+|..|++.|.+....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999999875443
No 32
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=1.9e-12 Score=123.61 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..||||+||++.+|+++|++||+.||+|.. |.|+.+ +...+||||+|.++++|+.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~---------------------V~I~~D---~et~gfAfVtF~d~~aaetA 60 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEH---------------------VEIIRS---GEYACTAYVTFKDAYALETA 60 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEE---------------------EEEecC---CCcceEEEEEECCHHHHHHH
Confidence 369999999999999999999999999999 888877 44568999999999999999
Q ss_pred HHhcCCceECCeEEEEEEec
Q 010771 217 YKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~ 236 (501)
| .|+|..|.++.|.|....
T Consensus 61 l-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 61 V-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred H-hcCCCeeCCceEEEEeCc
Confidence 9 799999999999998754
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.37 E-value=1.6e-12 Score=142.86 Aligned_cols=78 Identities=24% Similarity=0.520 Sum_probs=75.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
+|||||||.++|+++|.++|++||+|.. |.|+.|..|++++|||||+|.+.++|++||.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~---------------------v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~ 60 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLS---------------------VRVCRDSVTRRSLGYGYVNFQNPADAERALE 60 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 7999999999999999999999999999 8999999999999999999999999999999
Q ss_pred hcCCceECCeEEEEEEecC
Q 010771 219 QADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~~a~~ 237 (501)
.|++..|.|+.|+|.|+..
T Consensus 61 ~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 61 TMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred HhCCCEECCeeEEeecccc
Confidence 9999999999999999753
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.36 E-value=1.9e-12 Score=139.93 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+++++++|.++|++||.|.. |+|+.| .++.++|||||+|.+.++|++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~---------------------vrl~~D-~sG~sRGfaFV~F~~~e~A~~ 114 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYE---------------------LRLMMD-FSGQNRGYAFVTFCGKEEAKE 114 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEE---------------------EEEEEC-CCCCccceEEEEeCCHHHHHH
Confidence 4579999999999999999999999999999 899999 789999999999999999999
Q ss_pred HHHhcCCceEC-CeEEEEEEec
Q 010771 216 AYKQADGRKLD-GRRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~-Gr~i~V~~a~ 236 (501)
||..|||..|. |+.|.|.++.
T Consensus 115 Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 115 AVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred HHHHcCCCeecCCccccccccc
Confidence 99999999985 7887777653
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=2.3e-12 Score=125.72 Aligned_cols=79 Identities=41% Similarity=0.787 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|||+|||+.+|+++|..+|..||.|.. |.|+.+..++.++|||||+|.+.++|..|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~---------------------~~~~~d~~~~~~~g~~~v~f~~~~~~~~a 173 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKR---------------------VRLVRDRETGKSRGFAFVEFESEESAEKA 173 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeE---------------------EEeeeccccCccCceEEEEecCHHHHHHH
Confidence 589999999999999999999999999988 88999988999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEec
Q 010771 217 YKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~ 236 (501)
|..|+|..|.|+.|.|.++.
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 174 IEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred HHHcCCCeECCceeEeeccc
Confidence 99999999999999999975
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.35 E-value=9.5e-13 Score=119.03 Aligned_cols=82 Identities=28% Similarity=0.409 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+...|||||||+..++++.|.++|-+.|+|.. +.|+.|+.|...+|||||+|.++++|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~---------------------i~iPkDrv~~~~qGygF~Ef~~eeda 64 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVN---------------------LHIPKDRVTQKHQGYGFAEFRTEEDA 64 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceee---------------------eecchhhhcccccceeEEEEechhhh
Confidence 445679999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEec
Q 010771 214 KAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
+-||+.||...|-|++|+|..+.
T Consensus 65 dYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 65 DYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHHHHHHhcCceeEEEecc
Confidence 99999999999999999999875
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=1.4e-12 Score=135.97 Aligned_cols=81 Identities=31% Similarity=0.656 Sum_probs=78.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.+|||||||+++++++|..+|+..|.|.+ ++++.|+.||+++|||||+|.+.++|..|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s---------------------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~ 77 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLS---------------------FRLVYDRETGKPKGFGFCEFTDEETAERAI 77 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccce---------------------eeecccccCCCcCceeeEecCchhhHHHHH
Confidence 68999999999999999999999999999 999999999999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCCC
Q 010771 218 KQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
..|||.++.|++|+|.|+....
T Consensus 78 ~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 78 RNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred HhcCCcccCCceEEeecccccc
Confidence 9999999999999999987544
No 38
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.33 E-value=4.3e-12 Score=139.45 Aligned_cols=80 Identities=24% Similarity=0.474 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
...+|||+||+..+++++|+++|+.||.|.+ |+|+.+ .++.++|||||+|.+.++|.+
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~---------------------~~i~~d-~~g~~~g~gfV~f~~~~~A~~ 341 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITS---------------------AKVMLD-EKGVSRGFGFVCFSNPEEANR 341 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEE---------------------EEEEEC-CCCCcCCeEEEEeCCHHHHHH
Confidence 4568999999999999999999999999999 888888 679999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
||..|||..|+|+.|.|.+|..
T Consensus 342 A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 342 AVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred HHHHhcCCeeCCceeEEEeccC
Confidence 9999999999999999999874
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=6e-12 Score=96.98 Aligned_cols=71 Identities=38% Similarity=0.708 Sum_probs=66.0
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHhcC
Q 010771 142 VARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD 221 (501)
Q Consensus 142 VgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~ 221 (501)
|+|||..+++++|+.+|..||.|.. +.|..+..++.++|||||+|.+.++|..|+..|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~---------------------~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIES---------------------VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeE---------------------EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 6899999999999999999999998 7777777778999999999999999999999999
Q ss_pred CceECCeEEEEE
Q 010771 222 GRKLDGRRVLVD 233 (501)
Q Consensus 222 g~~l~Gr~i~V~ 233 (501)
|..|.|+.|.|.
T Consensus 60 ~~~~~~~~~~v~ 71 (71)
T smart00360 60 GKELDGRPLKVK 71 (71)
T ss_pred CCeeCCcEEEeC
Confidence 999999999873
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.31 E-value=8.6e-12 Score=134.93 Aligned_cols=76 Identities=29% Similarity=0.555 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc--CCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESY--GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~--G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..++|||+||++.+++++|+++|+.| |.|.. |.++ ++||||+|.+.++|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r---------------------V~~~--------rgfAFVeF~s~e~A 282 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER---------------------VKKI--------RDYAFVHFEDREDA 282 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE---------------------EEee--------cCeEEEEeCCHHHH
Confidence 35789999999999999999999999 99988 6654 46999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|||..|+|+.|+|.|+++...
T Consensus 283 ~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 283 VKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999999987543
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.30 E-value=3.6e-12 Score=132.31 Aligned_cols=81 Identities=33% Similarity=0.663 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
|...||||||.+++++++|..+|+.||.|.. |.+..|..||.++|||||+|.+.++|.+
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~---------------------v~l~~d~~tG~skgfGfi~f~~~~~ar~ 335 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIEN---------------------VQLTKDSETGRSKGFGFITFVNKEDARK 335 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCccccee---------------------eeeccccccccccCcceEEEecHHHHHH
Confidence 4445999999999999999999999999999 9999998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|+..|||.+|.|+.|+|.+...
T Consensus 336 a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 336 ALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHhccceecCceEEEEEeee
Confidence 9999999999999999987553
No 42
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=9.8e-12 Score=125.93 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
...+-||||.||.++.|++|.-+|++.|+|-+ ++|+.|+.+|.++|||||+|.+.+.|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e---------------------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq 139 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE---------------------LRLMMDPFSGDNRGYAFVTFCTKEEAQ 139 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceee---------------------EEEeecccCCCCcceEEEEeecHHHHH
Confidence 34578999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHhcCCceE-CCeEEEEEEec
Q 010771 215 AAYKQADGRKL-DGRRVLVDVER 236 (501)
Q Consensus 215 ~Al~~l~g~~l-~Gr~i~V~~a~ 236 (501)
+||+.||+++| .|+.|.|.++.
T Consensus 140 ~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 140 EAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred HHHHHhhCccccCCCEeEEEEee
Confidence 99999999988 68888888764
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=7.9e-12 Score=118.56 Aligned_cols=85 Identities=27% Similarity=0.495 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
+++..+.|.|--||.++|+++|+.+|..+|+|++ |+||.|+.+|.+.|||||-|..+++
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiES---------------------cKLvRDKitGqSLGYGFVNYv~p~D 95 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIES---------------------CKLVRDKITGQSLGYGFVNYVRPKD 95 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceee---------------------eeeeeccccccccccceeeecChHH
Confidence 3445567999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|++||..|||..|..+.|+|.+|++.
T Consensus 96 Ae~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 96 AEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred HHHHHhhhcceeeccceEEEEeccCC
Confidence 99999999999999999999999854
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.1e-11 Score=94.89 Aligned_cols=74 Identities=36% Similarity=0.717 Sum_probs=67.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
+|||+|||..+++++|..+|..||.|.. +.+..+..+ .+.++|||+|.+.++|..|+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~---------------------~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~ 58 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVES---------------------VRIVRDKDT-KSKGFAFVEFEDEEDAEKALE 58 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEE---------------------EEEeeCCCC-CcceEEEEEECCHHHHHHHHH
Confidence 5899999999999999999999999998 777766544 678999999999999999999
Q ss_pred hcCCceECCeEEEEEE
Q 010771 219 QADGRKLDGRRVLVDV 234 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~~ 234 (501)
.|++..+.|+.|.|.+
T Consensus 59 ~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 59 ALNGKELGGRPLRVEF 74 (74)
T ss_pred HhCCCeECCeEEEEeC
Confidence 9999999999999874
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=100.54 Aligned_cols=77 Identities=27% Similarity=0.485 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
.+..|||.|||+.+|.+++.++|.+||.|.. |.|-. +...+|-|||.|++..+|.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQ---------------------IRiG~---~k~TrGTAFVVYedi~dAk~ 72 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQ---------------------IRIGN---TKETRGTAFVVYEDIFDAKK 72 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEE---------------------EEecC---ccCcCceEEEEehHhhhHHH
Confidence 4568999999999999999999999999998 66654 34568999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEec
Q 010771 216 AYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|+..|+|.-+.++.|.|-+-.
T Consensus 73 A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 73 ACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred HHHHhcccccCCceEEEEecC
Confidence 999999999999999998754
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.9e-11 Score=114.75 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.-+|||-||.+++.|.-|-++|..||.|.. |+|+.|..|++++|||||.+.+.++|.-|
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~n---------------------VKvirD~ttnkCKGfgFVtMtNYdEAamA 336 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTN---------------------VKVIRDFTTNKCKGFGFVTMTNYDEAAMA 336 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceee---------------------EEEEecCCcccccceeEEEecchHHHHHH
Confidence 357999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecC
Q 010771 217 YKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|..|||..|+++.|.|.|...
T Consensus 337 i~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 337 IASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred HHHhcCccccceEEEEEEecC
Confidence 999999999999999998754
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.1e-11 Score=126.04 Aligned_cols=80 Identities=34% Similarity=0.569 Sum_probs=74.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..||||.|||+++|+++|.++|++||+|.+ +.||.++.|+.++|.|||.|.++.+|.+|
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~y---------------------a~iV~~k~T~~skGtAFv~Fkt~~~~~~c 350 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKY---------------------AIIVKDKDTGHSKGTAFVKFKTQIAAQNC 350 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhcccee---------------------EEEEeccCCCCcccceEEEeccHHHHHHH
Confidence 379999999999999999999999999999 88999999999999999999999999999
Q ss_pred HHhc-----CC-ceECCeEEEEEEecC
Q 010771 217 YKQA-----DG-RKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l-----~g-~~l~Gr~i~V~~a~~ 237 (501)
|.+. .| ..|+|+.|+|..|.+
T Consensus 351 i~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 351 IEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHhcCccCCCceEEEeccEEeeeeccc
Confidence 9866 34 789999999998764
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=3.3e-11 Score=129.87 Aligned_cols=80 Identities=24% Similarity=0.376 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 134 GDPYKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 134 ~~~~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+.++|||+||++ .+|+++|.++|+.||.|.. |+|+.+ .+|||||+|.+.++
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~---------------------vki~~~-----~~g~afV~f~~~~~ 325 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVER---------------------VKFMKN-----KKETALIEMADPYQ 325 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEeC-----CCCEEEEEECCHHH
Confidence 44678999999998 6999999999999999999 877765 36999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|..||..|||..|.|+.|.|.+++...
T Consensus 326 A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 326 AQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred HHHHHHHhCCCEECCceEEEEEccccc
Confidence 999999999999999999999987543
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.22 E-value=3.4e-11 Score=129.76 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
|+++|||+|||+.+++++|.++|+.||.|.. |.|+. .++||||+|.+.++|+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~---------------------v~i~~------~k~~afVef~~~e~A~~ 53 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSY---------------------VMMLP------GKRQALVEFEDEESAKA 53 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEC------CCCEEEEEeCchHHHHH
Confidence 4679999999999999999999999999999 77764 35899999999999999
Q ss_pred HHHh--cCCceECCeEEEEEEecCC
Q 010771 216 AYKQ--ADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~--l~g~~l~Gr~i~V~~a~~~ 238 (501)
||.. +++..|.|+.|.|.|+...
T Consensus 54 Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 54 CVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred HHHHhhcCCceEcCeEEEEEecCCc
Confidence 9986 4789999999999998653
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=8.8e-12 Score=123.06 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..+.||||.|++++.|+.|+..|..||+|++ |.|.+|+.|++.+|||||+|+-++.|.-
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKS---------------------InMSWDp~T~kHKgFAFVEYEvPEaAqL 170 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKS---------------------INMSWDPATGKHKGFAFVEYEVPEAAQL 170 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcce---------------------eecccccccccccceEEEEEeCcHHHHH
Confidence 3578999999999999999999999999999 8899999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEE
Q 010771 216 AYKQADGRKLDGRRVLVDV 234 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~ 234 (501)
|++.|||..|+|+.|+|..
T Consensus 171 AlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 171 ALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHHhccccccCccccccC
Confidence 9999999999999999974
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=6.6e-11 Score=122.43 Aligned_cols=82 Identities=24% Similarity=0.513 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+-..|+|.|||+.+...+|+.+|+.||.|.. |.|+....++. .|||||.|....+|..
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~E---------------------i~IP~k~dgkl-cGFaFV~fk~~~dA~~ 173 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVE---------------------IVIPRKKDGKL-CGFAFVQFKEKKDAEK 173 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEE---------------------EEcccCCCCCc-cceEEEEEeeHHHHHH
Confidence 3558999999999999999999999999999 88887665444 4999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||+.|||.+|+|++|-|+||....
T Consensus 174 Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 174 ALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred HHHhccCceecCceeEEeeecccc
Confidence 999999999999999999997643
No 52
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.16 E-value=4.8e-11 Score=115.09 Aligned_cols=71 Identities=25% Similarity=0.523 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
.|||||||.++++.+|+.+|++||+|.+ |.||+ .||||..++...++.||.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlE---------------------CDIvK--------NYgFVHiEdktaaedair 54 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLE---------------------CDIVK--------NYGFVHIEDKTAAEDAIR 54 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEe---------------------eeeec--------ccceEEeecccccHHHHh
Confidence 6999999999999999999999999999 88864 599999999999999999
Q ss_pred hcCCceECCeEEEEEEecCC
Q 010771 219 QADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+|+|.+|+|..|+|+-++.+
T Consensus 55 NLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 55 NLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred hcccceecceEEEEEecccc
Confidence 99999999999999998865
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.3e-10 Score=91.78 Aligned_cols=61 Identities=28% Similarity=0.568 Sum_probs=54.8
Q ss_pred HHHHHHHHH----hcCCcceeeecCCCCCCCCCCCCCCCceEE-EeecCCC--CCCCceEEEEEechhhHHHHHHhcCCc
Q 010771 151 ESKIKREFE----SYGPIKRLICNSCNGGDSSRDGKPCDEKVR-LVTDKET--NKPRGYAFIEYMHTRDMKAAYKQADGR 223 (501)
Q Consensus 151 e~~l~~~F~----~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~-l~~d~~t--~~~~g~aFVef~~~~~a~~Al~~l~g~ 223 (501)
+++|.++|. +||.|.. |. |+.+..+ +.++|||||+|.+.++|.+||..|||.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~---------------------v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGK---------------------INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeE---------------------EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 567888888 9999998 64 7777666 899999999999999999999999999
Q ss_pred eECCeEEEE
Q 010771 224 KLDGRRVLV 232 (501)
Q Consensus 224 ~l~Gr~i~V 232 (501)
.|.|+.|.|
T Consensus 61 ~~~gr~l~~ 69 (70)
T smart00361 61 YFDGRTVKA 69 (70)
T ss_pred EECCEEEEe
Confidence 999999986
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=2.5e-10 Score=85.85 Aligned_cols=56 Identities=30% Similarity=0.710 Sum_probs=49.2
Q ss_pred HHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceECCeEEEEE
Q 010771 154 IKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVD 233 (501)
Q Consensus 154 l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~ 233 (501)
|.++|++||+|.. |.+.... .++|||+|.+.++|..|+..|||..|.|+.|+|.
T Consensus 1 L~~~f~~fG~V~~---------------------i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~ 54 (56)
T PF13893_consen 1 LYKLFSKFGEVKK---------------------IKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVS 54 (56)
T ss_dssp HHHHHTTTS-EEE---------------------EEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEE
T ss_pred ChHHhCCcccEEE---------------------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 6789999999998 6664321 6899999999999999999999999999999999
Q ss_pred Ee
Q 010771 234 VE 235 (501)
Q Consensus 234 ~a 235 (501)
||
T Consensus 55 ~a 56 (56)
T PF13893_consen 55 YA 56 (56)
T ss_dssp EE
T ss_pred EC
Confidence 86
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.5e-10 Score=116.99 Aligned_cols=80 Identities=28% Similarity=0.552 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.-+||||-||..++|.+|+.+|++||.|.+ |.|++|+.|+.++|||||.|.+.++|.+|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~e---------------------inl~kDk~t~~s~gcCFv~~~trk~a~~a 92 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYE---------------------INLIKDKSTGQSKGCCFVKYYTRKEADEA 92 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeE---------------------EEeecccccCcccceEEEEeccHHHHHHH
Confidence 347999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCce-ECC--eEEEEEEecC
Q 010771 217 YKQADGRK-LDG--RRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~-l~G--r~i~V~~a~~ 237 (501)
+.+|++.. |-| .+|.|.+|.+
T Consensus 93 ~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 93 INALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred HHHhhcccccCCCCcceeecccch
Confidence 99998865 544 6788888764
No 56
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.1e-10 Score=118.29 Aligned_cols=72 Identities=33% Similarity=0.617 Sum_probs=66.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.+.|||.||+.+||++.|+++|+.||.|.. |+.+ +-||||.|.+.++|.+|
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veR---------------------Vkk~--------rDYaFVHf~eR~davkA 309 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVER---------------------VKKP--------RDYAFVHFAEREDAVKA 309 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEE---------------------eecc--------cceeEEeecchHHHHHH
Confidence 478999999999999999999999999988 6554 34999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecC
Q 010771 217 YKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~ 237 (501)
++.|||++|+|..|.|.+|++
T Consensus 310 m~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred HHHhcCceecCceEEEEecCC
Confidence 999999999999999999984
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=1.4e-10 Score=112.00 Aligned_cols=78 Identities=26% Similarity=0.511 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++||||||.+.++..+|+..|++||+|.+ ++||. +|+||.|...++|
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpvie---------------------cdivk--------dy~fvh~d~~eda 125 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIE---------------------CDIVK--------DYAFVHFDRAEDA 125 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCcee---------------------eeeec--------ceeEEEEeeccch
Confidence 345678999999999999999999999999999 88864 5999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
..||+.|||++|.|++++|.++..+-.
T Consensus 126 ~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 126 VEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred HHHHhcccccccccceeeeeeeccccc
Confidence 999999999999999999999986544
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=6.5e-10 Score=119.33 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
+...++|||||.|+.+|++.+|..+|+.||+|.+ |.| ..++|||||++....+
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqS---------------------i~l------i~~R~cAfI~M~~Rqd 469 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQS---------------------IIL------IPPRGCAFIKMVRRQD 469 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhccccee---------------------Eee------ccCCceeEEEEeehhH
Confidence 3445789999999999999999999999999999 666 3478999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~~ 241 (501)
|++||.+|++..|.++.|+|.|+.+..+.
T Consensus 470 A~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 470 AEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred HHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 99999999999999999999999865543
No 59
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.02 E-value=3.3e-10 Score=113.10 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=60.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..|.|+||.+.+|.++|..||..+|+|..+.|+... ..+.+ ....-.|||.|.+...+..|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~------------~d~~~------pv~sRtcyVkf~d~~sv~vaQ 69 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNV------------DDSKI------PVISRTCYVKFLDSQSVTVAQ 69 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCC------------CCccC------cceeeeEEEeccCCcceeHHh
Confidence 479999999999999999999999999996654311 11211 223458999999999999997
Q ss_pred HhcCCceECCeEEEEEE
Q 010771 218 KQADGRKLDGRRVLVDV 234 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~ 234 (501)
.|.++.|-+..|.|-.
T Consensus 70 -hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 70 -HLTNTVFVDRALIVRP 85 (479)
T ss_pred -hhccceeeeeeEEEEe
Confidence 5888888777777654
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.02 E-value=8.1e-10 Score=119.88 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=62.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
...++|||||||+.||+++|.++|..|+.+..+.. ..+ +.+|.+...+..+|||||+|.+.++|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~-----------~~~----~~~v~~~~~~~~kg~afVeF~~~e~A~ 237 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHK-----------AED----GKHVSSVNINKEKNFAFLEFRTVEEAT 237 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCC-----------CCC----CCceEEEEECCCCCEEEEEeCCHHHHh
Confidence 34579999999999999999999998743322000 000 001111123557899999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEec
Q 010771 215 AAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
.|| .|+|..|.|..|+|....
T Consensus 238 ~Al-~l~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 238 FAM-ALDSIIYSNVFLKIRRPH 258 (509)
T ss_pred hhh-cCCCeEeeCceeEecCcc
Confidence 999 699999999999987543
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.01 E-value=1.3e-09 Score=107.66 Aligned_cols=89 Identities=24% Similarity=0.411 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
...++.|||.|||..+|.+++.++|++||.|.. +.+++.++ |+|..+.. |+.+|-|+|.|...+++
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~----------d~~t~epk---~KlYrd~~-G~lKGDaLc~y~K~ESV 196 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR----------DPQTGEPK---VKLYRDNQ-GKLKGDALCCYIKRESV 196 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEec----------cCCCCCee---EEEEecCC-CCccCceEEEeecccHH
Confidence 344567999999999999999999999999987 34555555 99999965 99999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEec
Q 010771 214 KAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
+-||+.|++..|.|+.|+|+.|+
T Consensus 197 eLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 197 ELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred HHHHHHhCcccccCcEEEEehhh
Confidence 99999999999999999999886
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=5.5e-10 Score=112.93 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=80.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech
Q 010771 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT 210 (501)
Q Consensus 131 ~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~ 210 (501)
...++....|||.+||.+.-+.+|...|..||.|.+ .+|..|+.||-+++|+||.|++.
T Consensus 418 q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vls---------------------akvfidk~tnlskcfgfvSyen~ 476 (510)
T KOG0144|consen 418 QVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLS---------------------AKVFIDKVTNLSKCFGFVSYENA 476 (510)
T ss_pred cccCCCccceeeeeCchhhhhHHHHHHhccccceeE---------------------EEEEEecccCHhhhcCcccccch
Confidence 445566678999999999999999999999999999 77788899999999999999999
Q ss_pred hhHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 211 RDMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
.+|..||..|||..|++++|+|.+...+.
T Consensus 477 ~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 477 QSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred hhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999999999999999999876543
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.00 E-value=2.2e-09 Score=108.50 Aligned_cols=79 Identities=22% Similarity=0.477 Sum_probs=72.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHH-hcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFE-SYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~-~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
.+.|||.|||+++.|.+|+.+|. +.|+|.+ |.|+.| .+++++|||.|||.+++.+++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~y---------------------veLl~D-~~GK~rGcavVEFk~~E~~qK 101 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEY---------------------VELLFD-ESGKARGCAVVEFKDPENVQK 101 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEe---------------------eeeecc-cCCCcCCceEEEeeCHHHHHH
Confidence 45699999999999999999996 6899999 999998 469999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|++.||-+.|.|+.|+|+....
T Consensus 102 a~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 102 ALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred HHHHhhhccccCceEEEeccCc
Confidence 9999999999999999987543
No 64
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=98.99 E-value=2.5e-09 Score=89.30 Aligned_cols=89 Identities=53% Similarity=0.886 Sum_probs=75.3
Q ss_pred CCCCChhhhcccCCCCCCCCCCCCC----CCCCCCCCChhHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 010771 39 PTGLTANLLKLFEPRAPLEYKPPPE----KRKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGA 114 (501)
Q Consensus 39 ~~~~~~~~l~lf~p~pp~~~~pp~~----~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (501)
..+||+++++||+|.||++|++|.. .+...+++||++|+..|....+ .++....++..++.....+.+.++.+
T Consensus 2 t~~lPp~ll~LF~PRPPL~y~pP~d~~p~~r~t~~itGvs~~l~~~~~~~~---~~~~~~~et~~e~~~r~~~ek~~~~~ 78 (94)
T PF12220_consen 2 TSKLPPNLLALFAPRPPLPYLPPIDYPPEKRKTPPITGVSQYLSEFEDYKD---EPPPEPTETKEERRERKRKEKKEKNE 78 (94)
T ss_pred cCcCCHHHHHHcCCCCCCCCCCccccCcccccCCCCCcHHHHHHHHhcccc---CCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999854 4445569999999999987765 22345578999999999999999999
Q ss_pred HHHHHHHhhcCCCCCC
Q 010771 115 EKAAEELKKYDPHNDP 130 (501)
Q Consensus 115 ~~~~~~~~~~~p~~~~ 130 (501)
..+...++.|+|..+|
T Consensus 79 ~~l~~~l~~w~P~~DP 94 (94)
T PF12220_consen 79 EKLEEELKEWDPHEDP 94 (94)
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999998765
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.98 E-value=9.6e-10 Score=99.74 Aligned_cols=85 Identities=26% Similarity=0.416 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+....||||||.+++.+..|...|+.||.|... -+|+.+..||.++|||||.|.+.+.+
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~--------------------P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISP--------------------PKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccC--------------------CcccccccCCCCCCCeEEechhHHHH
Confidence 3445689999999999999999999999998751 36788889999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.+||..|||..++.++|.|.++...
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEec
Confidence 9999999999999999999999754
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=3.6e-09 Score=109.85 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||.+|+..|...+|+.||++||.|+- .+||++..+.-.+||+||++.+.++|.+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvG---------------------AKVVTNaRsPGaRCYGfVTMSts~eAtk 462 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVG---------------------AKVVTNARSPGARCYGFVTMSTSAEATK 462 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceec---------------------eeeeecCCCCCcceeEEEEecchHHHHH
Confidence 4578999999999999999999999999998 8899988888889999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
||..|+-++|.|+.|.|+-++..+.
T Consensus 463 CI~hLHrTELHGrmISVEkaKNEp~ 487 (940)
T KOG4661|consen 463 CIEHLHRTELHGRMISVEKAKNEPG 487 (940)
T ss_pred HHHHhhhhhhcceeeeeeecccCcc
Confidence 9999999999999999999875543
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=9.5e-09 Score=101.88 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
...|||..+.++.++++|+..|+.||+|.. |.|..++.++..+|||||+|.+..+...|
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~---------------------C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVK---------------------CQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceee---------------------EEeeccCCCCCccceeeEEeccccchHHH
Confidence 358999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|..||=+.|+|..|+|.-+...+
T Consensus 269 iasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhhcchhhcccceEecccccCCC
Confidence 99999999999999998765433
No 68
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.95 E-value=6.5e-09 Score=108.20 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=66.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|||+|||.+++..+|+++|..||+|+...| .+.. . .++..+||||+|.+..+++.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I-------------------~vr~-~-~~~~~~fgFV~f~~~~~~~~~ 346 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGI-------------------QVRS-P-GGKNPCFGFVEFENAAAVQNA 346 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccce-------------------EEec-c-CCCcCceEEEEEeecchhhhh
Confidence 356999999999999999999999999999553 3322 1 234449999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|. .+-..|++++|.|+.-+....
T Consensus 347 i~-Asp~~ig~~kl~Veek~~~~~ 369 (419)
T KOG0116|consen 347 IE-ASPLEIGGRKLNVEEKRPGFR 369 (419)
T ss_pred hh-cCccccCCeeEEEEecccccc
Confidence 95 568889999999998765443
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=7.8e-09 Score=95.82 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESY-GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~-G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
+..-+||..||.-+.+.+|..+|.+| |.|.. +.|..++.||.++|||||+|++.+.|+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r---------------------~rlsRnkrTGNSKgYAFVEFEs~eVA~ 106 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTR---------------------FRLSRNKRTGNSKGYAFVEFESEEVAK 106 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEE---------------------EEeecccccCCcCceEEEEeccHHHHH
Confidence 34579999999999999999999998 67766 778789999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
-|-..||+..|.|+.|.|.+-.+
T Consensus 107 IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 107 IAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred HHHHHhhhhhhhhheeeeEEeCc
Confidence 99999999999999999988654
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=101.19 Aligned_cols=74 Identities=26% Similarity=0.487 Sum_probs=64.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
-+|||||+|...+++.+|.++|.+||+|.+ |.++. .+++|||+|.+..+|+.|
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirs---------------------i~~~~------~~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRS---------------------IRILP------RKGCAFVTFTTREAAEKA 280 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeee---------------------EEeec------ccccceeeehhhHHHHHH
Confidence 469999999999999999999999999999 65543 346999999999999988
Q ss_pred HHh-cCCceECCeEEEEEEecC
Q 010771 217 YKQ-ADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~-l~g~~l~Gr~i~V~~a~~ 237 (501)
... ++...|+|.+|.|.|..+
T Consensus 281 ae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 281 AEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred HHhhcceeeecceEEEEEeCCC
Confidence 765 466779999999999876
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.81 E-value=1e-08 Score=96.49 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----HHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 136 PYKTLFVARLSYETTESKIKR----EFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~----~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
++.||||-||+..+..++|+. +|++||.|.. |.+. .|.+.+|-|||.|.+.+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild---------------------I~a~---kt~KmRGQA~VvFk~~~ 63 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD---------------------ISAF---KTPKMRGQAFVVFKETE 63 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEE---------------------EEec---CCCCccCceEEEecChh
Confidence 445999999999999999888 9999999977 4332 46889999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.|-.|+..|+|..+-|+.++|.+|+..
T Consensus 64 ~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 64 AASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred HHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999999999999999753
No 72
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.80 E-value=6.7e-09 Score=110.61 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=72.3
Q ss_pred CC-CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 135 DP-YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 135 ~~-~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
+| .++||||||++.++++.|...|..||+|..+.|||.. ... +......||||.|++..+|
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR--------------tEe----Ek~r~r~cgfvafmnR~D~ 232 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR--------------TEE----EKRRERNCGFVAFMNRADA 232 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeeccc--------------chh----hhccccccceeeehhhhhH
Confidence 44 4569999999999999999999999999997766533 111 3345667999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+.|++.|+|..|.+..|++.|+++
T Consensus 233 era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 233 ERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred HHHHHHhcceeeeeeeeeeccccc
Confidence 999999999999999999999863
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.1e-08 Score=106.13 Aligned_cols=74 Identities=22% Similarity=0.515 Sum_probs=69.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHh
Q 010771 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 219 (501)
Q Consensus 140 lfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~ 219 (501)
|||.||+..++...|.++|+.||.|.+ |+|.++.. | ++|| ||+|.+++.|.+||..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS---------------------~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~ 134 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILS---------------------CKVATDEN-G-SKGY-FVQFESEESAKKAIEK 134 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeE---------------------EEEEEcCC-C-ceee-EEEeCCHHHHHHHHHH
Confidence 999999999999999999999999999 99998853 4 9999 9999999999999999
Q ss_pred cCCceECCeEEEEEEecC
Q 010771 220 ADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 220 l~g~~l~Gr~i~V~~a~~ 237 (501)
|||..+.|++|.|.....
T Consensus 135 ~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 135 LNGMLLNGKKIYVGLFER 152 (369)
T ss_pred hcCcccCCCeeEEeeccc
Confidence 999999999999988654
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=6.6e-09 Score=98.51 Aligned_cols=72 Identities=32% Similarity=0.706 Sum_probs=65.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..||||+||+.+.+.+|..||..||.|.. |.|. .||+||+|.+..+|..||
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d---------------------~~mk--------~gf~fv~fed~rda~Dav 52 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPD---------------------ADMK--------NGFGFVEFEDPRDADDAV 52 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccc---------------------ceee--------cccceeccCchhhhhccc
Confidence 36999999999999999999999999988 5552 479999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCC
Q 010771 218 KQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
..|||..|+|..|.|+|+++.
T Consensus 53 ~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 53 HDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred chhcCceecceeeeeeccccc
Confidence 999999999999999998753
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.76 E-value=1.2e-08 Score=103.44 Aligned_cols=74 Identities=20% Similarity=0.420 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||.|||+++||+.|++-|..||.|.+ +.|+ +.++.+| .|.|.++++|+.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~y---------------------adim---e~GkskG--VVrF~s~edAEr 588 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLY---------------------ADIM---ENGKSKG--VVRFFSPEDAER 588 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceeh---------------------hhhh---ccCCccc--eEEecCHHHHHH
Confidence 4578999999999999999999999999999 4442 4577776 899999999999
Q ss_pred HHHhcCCceECCeEEEEEEe
Q 010771 216 AYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a 235 (501)
||..|+|..|+|+.|.|.|.
T Consensus 589 a~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 589 ACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HHHHhccCcccCceeeeeeC
Confidence 99999999999999999873
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.75 E-value=1.3e-08 Score=98.59 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..+.|||||+.+.+|.++|..+|+.||.|.. |.|++|..+++++|||||+|.+.+.++.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~---------------------~ti~~d~~~~~~k~~~yvef~~~~~~~~ 158 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINR---------------------VTVPKDKFRGHPKGFAYVEFSSYELVEE 158 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccc---------------------eeeeccccCCCcceeEEEecccHhhhHH
Confidence 3468999999999999999999999999998 8899999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
||. |+|..|.|..|.|.+....
T Consensus 159 ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 159 AYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred Hhh-cCCcccccccceeeeeeee
Confidence 996 9999999999999988754
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.75 E-value=6.9e-09 Score=104.28 Aligned_cols=82 Identities=29% Similarity=0.533 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++||||+|++.++++.|+.+|.+||+|.. |.|+.|+.++.++||+||+|.+.+.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d---------------------~~vm~d~~t~rsrgFgfv~f~~~~~v~~ 63 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTD---------------------CVVMRDPSTGRSRGFGFVTFATPEGVDA 63 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceee---------------------EEEeccCCCCCcccccceecCCCcchhe
Confidence 3568999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+| ...-+.|+|+.|.+.-|.++.
T Consensus 64 vl-~~~~h~~dgr~ve~k~av~r~ 86 (311)
T KOG4205|consen 64 VL-NARTHKLDGRSVEPKRAVSRE 86 (311)
T ss_pred ee-cccccccCCccccceeccCcc
Confidence 98 456788999999998887644
No 78
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=2.4e-08 Score=95.09 Aligned_cols=77 Identities=21% Similarity=0.497 Sum_probs=71.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.-.||+|.|..+++.+.|-..|.+|-.... .+++.+.-||+++||+||.|.+..++..|
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~---------------------akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQK---------------------AKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhh---------------------ccccccccccccccceeeeecCHHHHHHH
Confidence 457999999999999999999999987766 78999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEE
Q 010771 217 YKQADGRKLDGRRVLVDV 234 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~ 234 (501)
+.+|+|..++.+.|++--
T Consensus 249 mrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLRK 266 (290)
T ss_pred HHhhcccccccchhHhhh
Confidence 999999999999987643
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=2.5e-08 Score=106.77 Aligned_cols=79 Identities=24% Similarity=0.472 Sum_probs=66.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC-CCCCceEEEEEechhhHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET-NKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t-~~~~g~aFVef~~~~~a~~Al 217 (501)
+|||.||++.+|.+.|..+|..+|.|.++. |....++.. -.+.|||||+|.+.++|..||
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~-------------------I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~ 577 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIE-------------------ISKKKDPANKYLSMGFGFVEFAKPESAQAAL 577 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEE-------------------EeccccccccccccceeEEEecCHHHHHHHH
Confidence 399999999999999999999999999833 222222211 124599999999999999999
Q ss_pred HhcCCceECCeEEEEEEec
Q 010771 218 KQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~ 236 (501)
+.|+|+.|+|+.|.|.++.
T Consensus 578 k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 578 KALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCceecCceEEEEecc
Confidence 9999999999999999987
No 80
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=8.7e-09 Score=110.19 Aligned_cols=80 Identities=24% Similarity=0.582 Sum_probs=72.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.+.|+|-|||+..+-.+|+.+|..||.|.+ |.|+.-...+..+|||||+|.++.+|..|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlks---------------------vRlPKK~~k~a~rGF~Fv~f~t~~ea~nA 671 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKS---------------------VRLPKKIGKGAHRGFGFVDFLTPREAKNA 671 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceee---------------------eccchhhcchhhccceeeeccCcHHHHHH
Confidence 468999999999999999999999999999 66655445567799999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecC
Q 010771 217 YKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+.+|.++.|-|+.|.++||..
T Consensus 672 ~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 672 FDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred HHhhcccceechhhheehhcc
Confidence 999999999999999999874
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.70 E-value=3.3e-08 Score=99.38 Aligned_cols=83 Identities=28% Similarity=0.489 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++||||+||..+++++|+++|.+||.|.. +.|+.|..+..++||+||.|..++++.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~---------------------~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD---------------------VVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEe---------------------eEEeecccccccccceeeEeccccccce
Confidence 4568999999999999999999999999988 8899999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++ ....+.|+|+.|.|..|.++..
T Consensus 155 v~-~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 155 VT-LQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ec-ccceeeecCceeeEeeccchhh
Confidence 99 5788999999999999886544
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=3.6e-08 Score=103.11 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=67.4
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEe
Q 010771 129 DPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYM 208 (501)
Q Consensus 129 ~~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~ 208 (501)
.|....-+..+|+|-|||..|++++|..+|+.||+|+. |.. |-...|.+||+|.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~---------------------ir~-----t~~~~~~~~v~Fy 120 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE---------------------IRE-----TPNKRGIVFVEFY 120 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhh---------------------hhc-----ccccCceEEEEEe
Confidence 34444456679999999999999999999999999998 443 4557799999999
Q ss_pred chhhHHHHHHhcCCceECCeEEE
Q 010771 209 HTRDMKAAYKQADGRKLDGRRVL 231 (501)
Q Consensus 209 ~~~~a~~Al~~l~g~~l~Gr~i~ 231 (501)
+..+|+.|+++|++..|.|+.|+
T Consensus 121 DvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 121 DVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ehHhHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999999999988
No 83
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4e-08 Score=101.86 Aligned_cols=73 Identities=23% Similarity=0.454 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
.|||| +.||+..|.++|+.+|+|.+ |+|..|. | +.|||||.|.++++|++||.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s---------------------~rvc~d~-t--slgy~yvnf~~~~da~~A~~ 55 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLS---------------------IRVCRDA-T--SLGYAYVNFQQPADAERALD 55 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCcee---------------------EEEeecC-C--ccceEEEecCCHHHHHHHHH
Confidence 69999 89999999999999999999 8888887 6 99999999999999999999
Q ss_pred hcCCceECCeEEEEEEecCC
Q 010771 219 QADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.||...|.|++|+|.|+...
T Consensus 56 ~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 56 TMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred HcCCcccCCcEEEeehhccC
Confidence 99999999999999998643
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=1.9e-08 Score=106.01 Aligned_cols=93 Identities=27% Similarity=0.423 Sum_probs=81.5
Q ss_pred cCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceE
Q 010771 124 YDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYA 203 (501)
Q Consensus 124 ~~p~~~~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~a 203 (501)
+.+....+........|||++||..+++.++.+++..||.++. ..++.+..+|.++|||
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~---------------------f~lv~d~~~g~skg~a 334 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA---------------------FRLVKDSATGNSKGFA 334 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchh---------------------heeeccccccccccee
Confidence 3333333444455678999999999999999999999999998 8899999999999999
Q ss_pred EEEEechhhHHHHHHhcCCceECCeEEEEEEecC
Q 010771 204 FIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 204 FVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|++|.+......||..|||..|++..|.|..|-.
T Consensus 335 f~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 335 FCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred eeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 9999999999999999999999999999998764
No 85
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.63 E-value=8.7e-08 Score=92.87 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=71.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.+|+|.||++.|++++|+++|..||.++. +.|-+++ +|.+.|.|-|.|...++|+.||
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r---------------------~~vhy~~-~G~s~Gta~v~~~r~~DA~~av 141 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKR---------------------VAVHYDR-AGRSLGTADVSFNRRDDAERAV 141 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceE---------------------EeeccCC-CCCCCccceeeecchHhHHHHH
Confidence 58999999999999999999999998887 7677774 6999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecC
Q 010771 218 KQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+.|+|..|+|+.|+|.+...
T Consensus 142 k~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 142 KKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred HHhcCcccCCceeeeEEecC
Confidence 99999999999999988653
No 86
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=7.3e-08 Score=92.23 Aligned_cols=80 Identities=21% Similarity=0.482 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++||||-|...-.|++++.+|..||.|.+ |.++... .|.++|||||.|.+..+|..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e---------------------~tvlrg~-dg~sKGCAFVKf~s~~eAqa 75 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEE---------------------CTVLRGP-DGNSKGCAFVKFSSHAEAQA 75 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcce---------------------eEEecCC-CCCCCCceEEEeccchHHHH
Confidence 4578999999999999999999999999999 7777664 48899999999999999999
Q ss_pred HHHhcCCce-ECC--eEEEEEEecC
Q 010771 216 AYKQADGRK-LDG--RRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~-l~G--r~i~V~~a~~ 237 (501)
||..|+|.. +-| ..|.|+++..
T Consensus 76 AI~aLHgSqTmpGASSSLVVK~ADT 100 (371)
T KOG0146|consen 76 AINALHGSQTMPGASSSLVVKFADT 100 (371)
T ss_pred HHHHhcccccCCCCccceEEEeccc
Confidence 999999975 433 5788998863
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=1.8e-08 Score=93.93 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
...||||+||...|+|+-|.++|-+.|+|.. |.|..+.. +..+ ||||.|.++-++.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~k---------------------v~ip~~~d-~~~k-Fa~v~f~~E~sv~~ 64 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYK---------------------VGIPSGQD-QEQK-FAYVFFPNENSVQL 64 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEE---------------------EeCCCCcc-CCCc-eeeeecccccchhh
Confidence 3579999999999999999999999999988 66666543 5555 99999999999999
Q ss_pred HHHhcCCceECCeEEEEEEec
Q 010771 216 AYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|+..|||..|.+..|.|.+-.
T Consensus 65 a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 65 AGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhhcccchhccchhhccccc
Confidence 999999999999999998743
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.53 E-value=1.6e-07 Score=93.87 Aligned_cols=95 Identities=31% Similarity=0.388 Sum_probs=81.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..-||||-+||..+++.+|..+|.+||.|+. .-.+. .+.|.|.++++|+.+++-|.|.|.+...|++
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr----------nK~t~---kPki~~y~dkeT~~~KGeatvS~~D~~~aka 131 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKR----------NKRTG---KPKIKIYTDKETGAPKGEATVSYEDPPAAKA 131 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceecc----------CCCCC---CcchhccccccccCcCCceeeeecChhhhhh
Confidence 3458999999999999999999999999986 11122 3448999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTVPNW 243 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~~~~ 243 (501)
||..+++..+.|..|+|.+|..++..+|
T Consensus 132 ai~~~agkdf~gn~ikvs~a~~r~~ve~ 159 (351)
T KOG1995|consen 132 AIEWFAGKDFCGNTIKVSLAERRTGVES 159 (351)
T ss_pred hhhhhccccccCCCchhhhhhhccCccc
Confidence 9999999999999999999876664343
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.50 E-value=1e-06 Score=82.59 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..+||||.+||.+|..-+|..+|..|--...+- +++ +++....++-+|||+|.+...|.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgsl-------------------LK~-Tsk~~~~~~pvaFatF~s~q~A~a 92 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSL-------------------LKY-TSKGDQVCKPVAFATFTSHQFALA 92 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCcccee-------------------eee-ccCCCccccceEEEEecchHHHHH
Confidence 357999999999999999999999986555411 222 222323456799999999999999
Q ss_pred HHHhcCCceEC---CeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLD---GRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~---Gr~i~V~~a~~~~~ 240 (501)
|+++|||..|+ +..|+|++|+..+.
T Consensus 93 amnaLNGvrFDpE~~stLhiElAKSNtK 120 (284)
T KOG1457|consen 93 AMNALNGVRFDPETGSTLHIELAKSNTK 120 (284)
T ss_pred HHHHhcCeeeccccCceeEeeehhcCcc
Confidence 99999999984 78999999986543
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.40 E-value=1.4e-06 Score=72.83 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=68.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhc--CCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESY--GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~--G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+||.|-|||...|.++|.+++... |..-. +.|+.|..++.+.|||||-|.+.+.|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF---------------------~YLPiDf~~~~N~GYAFVNf~~~~~~~~ 60 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDF---------------------FYLPIDFKNKCNLGYAFVNFTSPQAAIR 60 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceE---------------------EEeeeeccCCCceEEEEEEcCCHHHHHH
Confidence 699999999999999999999763 44444 8899999999999999999999999999
Q ss_pred HHHhcCCceEC----CeEEEEEEec
Q 010771 216 AYKQADGRKLD----GRRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~----Gr~i~V~~a~ 236 (501)
....++|..|. .+.+.|.||+
T Consensus 61 F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 61 FYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred HHHHHcCCccccCCCCcEEEEehhH
Confidence 99999999985 5667788875
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.12 E-value=1.3e-06 Score=91.41 Aligned_cols=78 Identities=22% Similarity=0.500 Sum_probs=74.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..|||+-.|...++.-+|.+||+.+|+|.. |.||.|..++.++|.|||+|.+..++..|
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrd---------------------VriI~Dr~s~rskgi~Yvef~D~~sVp~a 237 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRD---------------------VRIIGDRNSRRSKGIAYVEFCDEQSVPLA 237 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcce---------------------eEeeccccchhhcceeEEEEecccchhhH
Confidence 468999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEec
Q 010771 217 YKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~ 236 (501)
| .|.|..+.|.+|.|....
T Consensus 238 i-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 238 I-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred h-hhcCCcccCceeEecccH
Confidence 9 799999999999998754
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.03 E-value=4.1e-06 Score=83.96 Aligned_cols=83 Identities=30% Similarity=0.572 Sum_probs=74.2
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 136 PYKTLF-VARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 136 ~~~tlf-VgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
+..++| |+||+..+++++|+.+|..+|.|.. |.+..+..++.++|||||+|.....+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~---------------------~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITS---------------------VRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCccee---------------------eccCCCCCccchhhhhhhhhhhchhHH
Confidence 445666 9999999999999999999999998 888889999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
.|+.. +...+.|..|.|+.....+.
T Consensus 242 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 242 LALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHhhc-ccCcccCcccccccCCCCcc
Confidence 99966 78889999999999876543
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.02 E-value=4.2e-06 Score=78.55 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=53.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
.+.||||.||..++||++|+.+|+.|--... ++|. .....+.|||+|.+.+.|..
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~---------------------l~~~----~~~g~~vaf~~~~~~~~at~ 263 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHI---------------------LKIR----ARGGMPVAFADFEEIEQATD 263 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceE---------------------EEEe----cCCCcceEeecHHHHHHHHH
Confidence 3569999999999999999999999976655 3332 12234589999999999999
Q ss_pred HHHhcCCceE
Q 010771 216 AYKQADGRKL 225 (501)
Q Consensus 216 Al~~l~g~~l 225 (501)
|+..|+|..|
T Consensus 264 am~~lqg~~~ 273 (284)
T KOG1457|consen 264 AMNHLQGNLL 273 (284)
T ss_pred HHHHhhccee
Confidence 9999998876
No 94
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.95 E-value=2.6e-05 Score=82.36 Aligned_cols=78 Identities=14% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFE-SYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~-~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
-..+++.|||.||-.-+|.-+|+.++. .+|.|..+|| .+.+..|||.|.+.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm---------------------------DkIKShCyV~yss~e 492 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM---------------------------DKIKSHCYVSYSSVE 492 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH---------------------------HHhhcceeEecccHH
Confidence 345678999999999999999999999 5777777543 234568999999999
Q ss_pred hHHHHHHhcCCceE---CCeEEEEEEecC
Q 010771 212 DMKAAYKQADGRKL---DGRRVLVDVERG 237 (501)
Q Consensus 212 ~a~~Al~~l~g~~l---~Gr~i~V~~a~~ 237 (501)
+|.+.+.+|+|..| +++.|.|+|...
T Consensus 493 EA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 493 EAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred HHHHHHHHHhccccCCCCCceeEeeecch
Confidence 99999999999987 788999999763
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=1.3e-05 Score=76.19 Aligned_cols=67 Identities=34% Similarity=0.559 Sum_probs=59.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.+.|+|-||+..+.+.+|..+|..+|.+.. +.+ ..++|||+|...++|..|
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~---------------------~~~--------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTY---------------------VDA--------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCch---------------------hhh--------hccccceeehhhhhhhhc
Confidence 457889999999999999999999999955 211 457999999999999999
Q ss_pred HHhcCCceECCeEEEE
Q 010771 217 YKQADGRKLDGRRVLV 232 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V 232 (501)
|..|+|..|.|+.|.|
T Consensus 150 ~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISV 165 (216)
T ss_pred chhccchhhcCceeee
Confidence 9999999999999999
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=4.4e-05 Score=61.31 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=47.9
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 138 KTLFVARLSYETTESK----IKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~----l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..|||.|||.+..... |+.++..|| .|.. | ..+.|+|.|.+++.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~-----------------------v--------~~~tAilrF~~~~~ 51 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS-----------------------V--------SGGTAILRFPNQEF 51 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------------------------TT-EEEEESSHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE-----------------------E--------eCCEEEEEeCCHHH
Confidence 4699999999888755 567777887 5543 2 23789999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEec
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|..|++.|+|..+.|.+|.|.+..
T Consensus 52 A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 52 AERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHHHHHTT--SSSS--EEESS-
T ss_pred HHHHHHhhcccccccceEEEEEcC
Confidence 999999999999999999999874
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.81 E-value=0.00012 Score=72.73 Aligned_cols=84 Identities=24% Similarity=0.420 Sum_probs=63.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHH------HHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC---CCCC
Q 010771 130 PNVSGDPYKTLFVARLSYETTESKI------KREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET---NKPR 200 (501)
Q Consensus 130 ~~~~~~~~~tlfVgnL~~~~te~~l------~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t---~~~~ 200 (501)
.++...+..-|||-+|++.+..+++ .++|.+||.|.. |+.++.| +...
T Consensus 107 sniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K-----------------------IvvNkkt~s~nst~ 163 (480)
T COG5175 107 SNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK-----------------------IVVNKKTSSLNSTA 163 (480)
T ss_pred ccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeE-----------------------EEeccccccccccc
Confidence 3344445567999999999887773 489999999976 3333222 1122
Q ss_pred ce--EEEEEechhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 201 GY--AFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 201 g~--aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
+. .||+|...++|..||.+.+|..++|+.|+..+..
T Consensus 164 ~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 164 SHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred ccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 22 3999999999999999999999999999999865
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.79 E-value=0.00017 Score=72.02 Aligned_cols=96 Identities=20% Similarity=0.456 Sum_probs=70.4
Q ss_pred HHHHhhcCCCCCCCCCCCCCCEEEEcCCCC----CCC-------HHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCc
Q 010771 118 AEELKKYDPHNDPNVSGDPYKTLFVARLSY----ETT-------ESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDE 186 (501)
Q Consensus 118 ~~~~~~~~p~~~~~~~~~~~~tlfVgnL~~----~~t-------e~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 186 (501)
...+--|.|.-+.....-..+||.|.||=. ..+ .++|.+.+++||.|..
T Consensus 246 q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~-------------------- 305 (382)
T KOG1548|consen 246 QQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRK-------------------- 305 (382)
T ss_pred HHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcce--------------------
Confidence 333334444442233334567999999832 233 2567778899999998
Q ss_pred eEEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 187 KVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 187 ~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|.| .+ .++.|.+-|.|.+.+.|..||+.|+|..|+|++|...+..+.
T Consensus 306 -vvv-~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 306 -VVV-YD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred -EEE-ec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 544 22 568999999999999999999999999999999999887553
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.74 E-value=7e-05 Score=77.87 Aligned_cols=75 Identities=24% Similarity=0.424 Sum_probs=62.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.-|-+-+|||++|+++|.+||+.|+ |.. +.++ ..+|++.|-|||+|.+++++++||
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~---------------------~~~~--r~~Gr~sGeA~Ve~~seedv~~Al 66 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IEN---------------------LEIP--RRNGRPSGEAYVEFTSEEDVEKAL 66 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeE---------------------EEEe--ccCCCcCcceEEEeechHHHHHHH
Confidence 4577789999999999999999986 544 3333 357999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecC
Q 010771 218 KQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+ .+-..+..+-|.|--+.+
T Consensus 67 k-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 67 K-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred H-hhHHHhCCceEEEEccCC
Confidence 5 677788888888876644
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.65 E-value=0.00014 Score=68.87 Aligned_cols=77 Identities=23% Similarity=0.471 Sum_probs=66.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+..+||+.|||.+++.+.|..+|.+|...+. |.++.. -.+.|||+|.+...+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~ke---------------------ir~i~~-----~~~iAfve~~~d~~a 196 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKE---------------------IRLIPP-----RSGIAFVEFLSDRQA 196 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccce---------------------eEeccC-----CCceeEEecchhhhh
Confidence 456789999999999999999999999999888 666543 357999999999999
Q ss_pred HHHHHhcCCceEC-CeEEEEEEec
Q 010771 214 KAAYKQADGRKLD-GRRVLVDVER 236 (501)
Q Consensus 214 ~~Al~~l~g~~l~-Gr~i~V~~a~ 236 (501)
..|...|+|..|- ...|.|.++.
T Consensus 197 ~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 197 SAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhhhccceeccCceEEecccC
Confidence 9999999999986 7778887764
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.63 E-value=0.00016 Score=73.52 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=67.8
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 137 YKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 137 ~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+..|.|.||.. .||.+-|..+|.-||.|.. |+|+.++ +-.|+|.|.+...|+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqR---------------------Vkil~nk-----kd~ALIQmsd~~qAqL 350 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQR---------------------VKILYNK-----KDNALIQMSDGQQAQL 350 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEE---------------------EEeeecC-----CcceeeeecchhHHHH
Confidence 57899999977 5899999999999999999 8887653 2679999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|+..|+|..|.|++|+|.+++-.
T Consensus 351 A~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 351 AMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred HHHHhhcceecCceEEEeeccCc
Confidence 99999999999999999998743
No 102
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00016 Score=76.27 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=61.2
Q ss_pred CCCEEEEcCCCCCCCH------HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 136 PYKTLFVARLSYETTE------SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te------~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
-...|+|.|+|.--.. .-|..+|+++|+|.. +.++.+..+| ++||.|++|.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn---------------------~~~P~~e~gg-tkG~lf~E~~~ 114 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN---------------------MYYPIDEEGG-TKGYLFVEYAS 114 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc---------------------eeeccCccCC-eeeEEEEEecC
Confidence 3457999999974322 346789999999988 7777776655 99999999999
Q ss_pred hhhHHHHHHhcCCceEC-CeEEEEEE
Q 010771 210 TRDMKAAYKQADGRKLD-GRRVLVDV 234 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~-Gr~i~V~~ 234 (501)
..+|+.|++.|||+.|+ .+.+.|..
T Consensus 115 ~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 115 MRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred hhhHHHHHHhcccceecccceEEeeh
Confidence 99999999999999885 45555543
No 103
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=5.8e-05 Score=75.10 Aligned_cols=75 Identities=16% Similarity=0.332 Sum_probs=65.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCC--cceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGP--IKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~--i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
-++|||||-|++|+++|.+.+...|. |.. +++..+..+|.++|||+|...+..++++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~d---------------------mKFFENR~NGQSKG~AL~~~~SdAa~Kq 139 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFAD---------------------MKFFENRTNGQSKGYALLVLNSDAAVKQ 139 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhh---------------------hhhhhcccCCcccceEEEEecchHHHHH
Confidence 37999999999999999999988773 444 6777788899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEE
Q 010771 216 AYKQADGRKLDGRRVLVD 233 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~ 233 (501)
.++.|--++|.|..-.|-
T Consensus 140 ~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 140 TMEILPTKTIHGQSPTVL 157 (498)
T ss_pred HHHhcccceecCCCCeee
Confidence 999999999999865554
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0003 Score=73.70 Aligned_cols=70 Identities=24% Similarity=0.343 Sum_probs=62.6
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEE
Q 010771 129 DPNVSGDPYKTLFVARLSYETTESKIKREFE-SYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEY 207 (501)
Q Consensus 129 ~~~~~~~~~~tlfVgnL~~~~te~~l~~~F~-~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef 207 (501)
+.+..-+|.+|||||+||.-++.++|..||. -||.|.. |-|-+|+.-+-++|-|=|+|
T Consensus 362 d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~y---------------------aGIDtD~k~KYPkGaGRVtF 420 (520)
T KOG0129|consen 362 DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY---------------------VGIDTDPKLKYPKGAGRVTF 420 (520)
T ss_pred ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEE---------------------EEeccCcccCCCCCcceeee
Confidence 4555678899999999999999999999999 6999999 77778877889999999999
Q ss_pred echhhHHHHHHh
Q 010771 208 MHTRDMKAAYKQ 219 (501)
Q Consensus 208 ~~~~~a~~Al~~ 219 (501)
.+..+-.+||.+
T Consensus 421 snqqsYi~AIsa 432 (520)
T KOG0129|consen 421 SNQQAYIKAISA 432 (520)
T ss_pred cccHHHHHHHhh
Confidence 999999999963
No 105
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.42 E-value=0.00016 Score=61.72 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=43.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..|+|.+|+..++.++|+.+|+.||.|.. |.+.. .-..|||-|.+.+.|+.|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~y---------------------VD~~~------G~~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAY---------------------VDFSR------GDTEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEE---------------------EE--T------T-SEEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcce---------------------EEecC------CCCEEEEEECCcchHHHHH
Confidence 46899999999999999999999999998 66632 2348999999999999999
Q ss_pred HhcC-----CceECCeEEEEEE
Q 010771 218 KQAD-----GRKLDGRRVLVDV 234 (501)
Q Consensus 218 ~~l~-----g~~l~Gr~i~V~~ 234 (501)
..+. +..|.+..+.+.+
T Consensus 55 ~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 55 EKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp HHHHHTTTS-B-TTSSSEEEE-
T ss_pred HHHHhccCCceEEcCceEEEEE
Confidence 8763 3456777666665
No 106
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.23 E-value=0.00088 Score=69.89 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=62.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+...|-+-+||+.||+++|.+||+..-.|.. - |.|+.+. .+++.|-|||.|.+.+.|+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-g-------------------i~l~~d~-rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-G-------------------ILLPMDQ-RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCccccc-c-------------------eeeeccC-CCCcccceEEEecCHHHHH
Confidence 34557889999999999999999987643332 1 5566664 4779999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEe
Q 010771 215 AAYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a 235 (501)
+||. -+-..|+-+-|.|--+
T Consensus 160 ~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 160 IALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHH-HHHHhhccceEEeehh
Confidence 9995 5777788888888654
No 107
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.16 E-value=0.00038 Score=71.28 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=56.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.-+.+||.|.|||..-.-+-|.+||+.||.|+.|+||..----....+++.. ..+ -..+-+|||+|...+.|
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~--~~~------~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKK--YFE------LQTKECALVEYEEVEAA 299 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCcc--chh------hhhhhhhhhhhhhhHHH
Confidence 3478999999999999999999999999999998887431000000001100 000 11356899999999999
Q ss_pred HHHHHhcCC
Q 010771 214 KAAYKQADG 222 (501)
Q Consensus 214 ~~Al~~l~g 222 (501)
.+|.+.|+.
T Consensus 300 ~KA~e~~~~ 308 (484)
T KOG1855|consen 300 RKARELLNP 308 (484)
T ss_pred HHHHHhhch
Confidence 999976643
No 108
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.12 E-value=0.0028 Score=58.30 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=54.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..|.|.+||...+|++|+.++.+.|.|+. ..+..| |++.|+|...++++-||
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCf---------------------adv~rD-------g~GvV~~~r~eDMkYAv 167 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCF---------------------ADVQRD-------GVGVVEYLRKEDMKYAV 167 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeee---------------------eeeecc-------cceeeeeeehhhHHHHH
Confidence 46999999999999999999999999998 666554 58999999999999999
Q ss_pred HhcCCceEC
Q 010771 218 KQADGRKLD 226 (501)
Q Consensus 218 ~~l~g~~l~ 226 (501)
..|+...+.
T Consensus 168 r~ld~~~~~ 176 (241)
T KOG0105|consen 168 RKLDDQKFR 176 (241)
T ss_pred Hhhcccccc
Confidence 999887764
No 109
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.08 E-value=0.00024 Score=68.45 Aligned_cols=62 Identities=21% Similarity=0.456 Sum_probs=50.6
Q ss_pred HHHHHHHH-hcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceECCeEE
Q 010771 152 SKIKREFE-SYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 230 (501)
Q Consensus 152 ~~l~~~F~-~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i 230 (501)
++|...|+ +||+|.+ +.|. +...-...|.+||.|...++|++|+..|||..|.|++|
T Consensus 83 Ed~f~E~~~kygEiee---------------------~~Vc-~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi 140 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEE---------------------LNVC-DNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPI 140 (260)
T ss_pred HHHHHHHHHHhhhhhh---------------------hhhh-cccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcc
Confidence 55666666 8999998 3332 22335578999999999999999999999999999999
Q ss_pred EEEEe
Q 010771 231 LVDVE 235 (501)
Q Consensus 231 ~V~~a 235 (501)
..++.
T Consensus 141 ~ae~~ 145 (260)
T KOG2202|consen 141 HAELS 145 (260)
T ss_pred eeeec
Confidence 99987
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.01 E-value=0.0015 Score=69.60 Aligned_cols=64 Identities=22% Similarity=0.445 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeec---CCCCCCCceEEEEEechhhHHHHHHhcCCceECCe
Q 010771 152 SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTD---KETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGR 228 (501)
Q Consensus 152 ~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d---~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr 228 (501)
++|+..|.+||.|.. |.|..+ ....-..|..||+|.+.++++.|+.+|+|.++.|+
T Consensus 424 Edvr~ec~k~g~v~~---------------------v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRS---------------------VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred HHHHHHhcccCceeE---------------------EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 445566778999988 555554 22234567899999999999999999999999999
Q ss_pred EEEEEEec
Q 010771 229 RVLVDVER 236 (501)
Q Consensus 229 ~i~V~~a~ 236 (501)
.|.+.|-.
T Consensus 483 tVvtsYyd 490 (500)
T KOG0120|consen 483 TVVASYYD 490 (500)
T ss_pred EEEEEecC
Confidence 99988753
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.95 E-value=0.006 Score=61.70 Aligned_cols=87 Identities=22% Similarity=0.290 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 134 GDPYKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 134 ~~~~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+.+.+.|-+|.. .++-+.|..+|-.||.|.. |++++. ..|-|.|++.+..+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~r---------------------vkFmkT-----k~gtamVemgd~~a 337 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVER---------------------VKFMKT-----KPGTAMVEMGDAYA 337 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceee---------------------EEEeec-----ccceeEEEcCcHHH
Confidence 44567899999987 4667889999999999999 666543 34789999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCCCCCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 246 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~~~~~~~ 246 (501)
++.||..||+..|-|.+|.|.+++...+....+.
T Consensus 338 ver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pf 371 (494)
T KOG1456|consen 338 VERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPF 371 (494)
T ss_pred HHHHHHHhccCccccceEEEeeccccccccCCce
Confidence 9999999999999999999999986555443443
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.92 E-value=0.0017 Score=48.13 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=41.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|-|.+.+.... +.|..+|..||+|.. +.+. ....+.||.|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~---------------------~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVD---------------------IYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEE---------------------EEcC------CCCcEEEEEECCHHHHHhhC
Confidence 4788999997666 455669999999988 5552 34569999999999999985
No 113
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.89 E-value=0.00074 Score=65.03 Aligned_cols=71 Identities=13% Similarity=0.338 Sum_probs=57.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC--------CCCCc----eEEE
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET--------NKPRG----YAFI 205 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t--------~~~~g----~aFV 205 (501)
-.||++|||+.+...-|++||+.||+|-. |.|-....+ |.+.. -|.|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGR---------------------vylqpE~~s~~~~r~~~~~n~~~~y~EGWv 133 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGR---------------------VYLQPEDDSKRAARKRKGGNYKKLYSEGWV 133 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccce---------------------EEecchhhHHHHHHhhcCCCccccchhHHH
Confidence 47999999999999999999999999988 544433322 22222 3779
Q ss_pred EEechhhHHHHHHhcCCceECCeE
Q 010771 206 EYMHTRDMKAAYKQADGRKLDGRR 229 (501)
Q Consensus 206 ef~~~~~a~~Al~~l~g~~l~Gr~ 229 (501)
+|.+...|+.+...|||..|+|++
T Consensus 134 EF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 134 EFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHHHHHHHhCCCccCCCC
Confidence 999999999999999999999975
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.87 E-value=0.0035 Score=67.77 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=65.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
.|-|-|+|+.++-++|.+||..|-.+-.. |.|-.+ ..|.+.|-|.|.|++.+.|..|..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~s--------------------I~~r~n-d~G~pTGe~mvAfes~~eAr~A~~ 927 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNS--------------------IRIRRN-DDGVPTGECMVAFESQEEARRASM 927 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCc--------------------eeEeec-CCCCcccceeEeecCHHHHHhhhh
Confidence 67889999999999999999999776541 444333 569999999999999999999999
Q ss_pred hcCCceECCeEEEEEE
Q 010771 219 QADGRKLDGRRVLVDV 234 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~~ 234 (501)
.|++..|..+.|.|.+
T Consensus 928 dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 928 DLDGQKIRNRVVSLRI 943 (944)
T ss_pred ccccCcccceeEEEEe
Confidence 9999999999998875
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0018 Score=68.05 Aligned_cols=62 Identities=23% Similarity=0.528 Sum_probs=46.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecC---CCCCCCc---eEEEEEech
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDK---ETNKPRG---YAFIEYMHT 210 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~---~t~~~~g---~aFVef~~~ 210 (501)
.+.||||+||+.++|+.|...|..||.|.- .+.... .--.++| |+|+.|+++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~V----------------------dWP~k~~~~~~~ppkGs~~YvflvFe~E 316 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKV----------------------DWPGKANSRGRAPPKGSYGYVFLVFEDE 316 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEe----------------------ecCCCccccccCCCCCcccEEEEEecch
Confidence 478999999999999999999999999874 222100 0112455 999999999
Q ss_pred hhHHHHHHhc
Q 010771 211 RDMKAAYKQA 220 (501)
Q Consensus 211 ~~a~~Al~~l 220 (501)
.++..-|.+.
T Consensus 317 ~sV~~Ll~aC 326 (520)
T KOG0129|consen 317 RSVQSLLSAC 326 (520)
T ss_pred HHHHHHHHHH
Confidence 9888766543
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.80 E-value=0.0063 Score=54.44 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=52.2
Q ss_pred CCCCCEEEEcCCC-----CCCCH----HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEE
Q 010771 134 GDPYKTLFVARLS-----YETTE----SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAF 204 (501)
Q Consensus 134 ~~~~~tlfVgnL~-----~~~te----~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aF 204 (501)
++|.-||.|.=+. ..... .+|.+.|..||+|.- |+++- +.-+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvL---------------------vRfv~--------~~mw 74 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVL---------------------VRFVG--------DTMW 74 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECE---------------------EEEET--------TCEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEE---------------------EEEeC--------CeEE
Confidence 5566688887666 12223 367788899998876 66643 3578
Q ss_pred EEEechhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 205 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 205 Vef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|+|.+-.+|.+|+ .|+|..|+|+.|+|.+-.
T Consensus 75 VTF~dg~sALaal-s~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 75 VTFRDGQSALAAL-SLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp EEESSCHHHHHHH-HGCCSEETTEEEEEEE--
T ss_pred EEECccHHHHHHH-ccCCcEECCEEEEEEeCC
Confidence 9999999999999 699999999999998754
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.79 E-value=0.0015 Score=72.56 Aligned_cols=76 Identities=30% Similarity=0.514 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+++.||||+|..++....|..+|..||+|.. |.+ .+..-||||.|.+...++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~---------------------Idy------~hgq~yayi~yes~~~aq 505 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRI---------------------IDY------RHGQPYAYIQYESPPAAQ 505 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCccee---------------------eec------ccCCcceeeecccCccch
Confidence 45678999999999999999999999999988 554 234459999999999999
Q ss_pred HHHHhcCCceECC--eEEEEEEecC
Q 010771 215 AAYKQADGRKLDG--RRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~G--r~i~V~~a~~ 237 (501)
.|+..|-|..|+| +.|.|.++..
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccC
Confidence 9999999999987 6799999864
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.72 E-value=0.0015 Score=72.57 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
.+.|||+|||...+++.+|...|..+|.|.. |.|-+.. -+.-..||||.|.+...+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~---------------------VDiKtP~-~~~esa~~f~~~~n~dmtp~ 428 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEE---------------------VDIKTPH-IKTESAYAFVSLLNTDMTPS 428 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccc---------------------cccccCC-CCcccchhhhhhhccccCcc
Confidence 4579999999999999999999999999999 4443321 24455699999999999999
Q ss_pred HHHhcCCceECCeEEEEEEec
Q 010771 216 AYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|+..|.+..|..-.+++.+..
T Consensus 429 ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 429 AKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred cchhhcCCccccCcccccccc
Confidence 999999988876666666653
No 119
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.71 E-value=0.0026 Score=64.91 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=65.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+|+.||.+.|||..++|++|+.+|..-|..... .+. -++.+-+|++.+.+.+.|
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vka--------------------fkf-----f~kd~kmal~q~~sveeA 465 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA--------------------FKF-----FQKDRKMALPQLESVEEA 465 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEe--------------------eee-----cCCCcceeecccCChhHh
Confidence 4677899999999999999999999998866441 121 244556999999999999
Q ss_pred HHHHHhcCCceECCe-EEEEEEecC
Q 010771 214 KAAYKQADGRKLDGR-RVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr-~i~V~~a~~ 237 (501)
..|+..|+++.+++. .|+|.|++.
T Consensus 466 ~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 466 IQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hhhccccccccCCCCceEEEEeecc
Confidence 999999999999776 889999864
No 120
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.67 E-value=0.0083 Score=50.58 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=50.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..|.|-+.|.. ....|..+|++||.|.+..-.... .. .+... ..........|.|.+..+|.+||
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~-------~~------~~~~~-~~~~~~NWi~I~Y~~~~~A~rAL 71 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRS-------SS------GINPY-PIPSGGNWIHITYDNPLSAQRAL 71 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG------------------------E-CCTTEEEEEESSHHHHHHHH
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccc-------cc------ccccc-cCCCCCCEEEEECCCHHHHHHHH
Confidence 46889999987 557789999999999872100000 00 00000 00123458899999999999999
Q ss_pred HhcCCceECCeEEE-EEEe
Q 010771 218 KQADGRKLDGRRVL-VDVE 235 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~-V~~a 235 (501)
..||..|.|..|. |.+.
T Consensus 72 -~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 72 -QKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp -TTTTEEETTCEEEEEEE-
T ss_pred -HhCCeEEcCcEEEEEEEc
Confidence 5799999986554 6665
No 121
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.52 E-value=0.0023 Score=69.11 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=60.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.-|||||||.+.+..+-++.+...||-|.+ ++.+ -|||++|.....+..|
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s---------------------~kr~---------~fgf~~f~~~~~~~ra 89 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPS---------------------WKRD---------KFGFCEFLKHIGDLRA 89 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchh---------------------hhhh---------hhcccchhhHHHHHHH
Confidence 348999999999999999999999999987 4432 1999999999999999
Q ss_pred HHhcCCceECCeEEEEEEe
Q 010771 217 YKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a 235 (501)
+..|+-..++|..+.+.+.
T Consensus 90 ~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 90 SRLLTELNIDDQKLIENVD 108 (668)
T ss_pred HHHhcccCCCcchhhccch
Confidence 9999999999999888763
No 122
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.52 E-value=0.0071 Score=61.19 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCCEEEEc--CCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 136 PYKTLFVA--RLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 136 ~~~tlfVg--nL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
+++.|.+. |--+-||.+-|..++...|+|.. |.|.. ++--.|.|||++.+.|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR---------------------IvIfk-----kngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLR---------------------IVIFK-----KNGVQAMVEFDSVEVA 172 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEE---------------------EEEEe-----ccceeeEEeechhHHH
Confidence 44555555 44557999999999999999987 44432 2334799999999999
Q ss_pred HHHHHhcCCceE--CCeEEEEEEecCC
Q 010771 214 KAAYKQADGRKL--DGRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l--~Gr~i~V~~a~~~ 238 (501)
++|...|||..| +.-.|+|++|++.
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcc
Confidence 999999999987 5578899999864
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.42 E-value=0.0081 Score=58.98 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCC-CCceEEEEEechhhHHHHHHhcCCceECCeEE
Q 010771 152 SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNK-PRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 230 (501)
Q Consensus 152 ~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~-~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i 230 (501)
.++++.+++||.|..|. |..++.... -.---||+|...++|.+|+..|||..|+|+.+
T Consensus 301 de~keEceKyg~V~~vi---------------------ifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVI---------------------IFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHHHHHhhcceeeEE---------------------EEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 56778899999998843 333321111 12247999999999999999999999999998
Q ss_pred EEEEe
Q 010771 231 LVDVE 235 (501)
Q Consensus 231 ~V~~a 235 (501)
...|-
T Consensus 360 ~A~Fy 364 (378)
T KOG1996|consen 360 SACFY 364 (378)
T ss_pred eheec
Confidence 87764
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.25 E-value=0.016 Score=58.82 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|-+.+||++.+.++|..||..|..-.. + ..|.|+.+. .|.+.|-|||+|.+.+.|.+|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~--f----------------~gVHmv~N~-qGrPSGeAFIqm~nae~a~aa 340 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIR--F----------------QGVHMVLNG-QGRPSGEAFIQMRNAERARAA 340 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcc--c----------------ceeEEEEcC-CCCcChhhhhhhhhhHHHHHH
Confidence 457999999999999999999999864332 1 117777774 599999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEe
Q 010771 217 YKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a 235 (501)
....+.+...++.|.|-.+
T Consensus 341 aqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 341 AQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred HHHHHHhhcccceEEEeec
Confidence 9888888778888888654
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.03 E-value=0.0046 Score=68.52 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=68.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..|||.|+|+..|.++|+.+|.++|.++. +.++..+ .|+++|.|||.|.++.++..++
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~---------------------~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTS---------------------LRLVTVR-AGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccc---------------------cchhhhh-ccccccceeccCCCcchhhhhc
Confidence 57999999999999999999999999998 5555554 4899999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecC
Q 010771 218 KQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~ 237 (501)
..+++..+.-..+.|.++.+
T Consensus 795 ~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 795 ASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccchhhhhhhcCccccccCC
Confidence 88888888888888887654
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.89 E-value=0.00078 Score=74.39 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=57.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.++||.||++.+.+.+|...|..+|.|.. |.|+....++..+|+|||+|...+.+.+||
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~---------------------vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEV---------------------VQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhh---------------------HHHHHHhhccccccceeeEeecCCchhhhh
Confidence 47999999999999999999999999887 555545567899999999999999999999
Q ss_pred HhcCCceECC
Q 010771 218 KQADGRKLDG 227 (501)
Q Consensus 218 ~~l~g~~l~G 227 (501)
....+ .+.|
T Consensus 727 ~f~d~-~~~g 735 (881)
T KOG0128|consen 727 AFRDS-CFFG 735 (881)
T ss_pred hhhhh-hhhh
Confidence 64444 4444
No 127
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.71 E-value=0.023 Score=59.34 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=58.7
Q ss_pred CEEEEcCCCCCC-CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 138 KTLFVARLSYET-TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 138 ~tlfVgnL~~~~-te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
++|-|.-+++.. +-++|..+|.+||.|.. |.|-. +.-.|.|+|.+..+|-.|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n---------------------~qv~~------~~~~a~vTF~t~aeag~a 425 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIEN---------------------IQVDY------SSLHAVVTFKTRAEAGEA 425 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCcccc---------------------ccccC------chhhheeeeeccccccch
Confidence 456666666654 45889999999999998 55522 235799999999999888
Q ss_pred HHhcCCceECCeEEEEEEecCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+ ...+..|+++.|+|-|-.+.+
T Consensus 426 ~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 426 Y-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred h-ccccceecCceeEEEEecCCc
Confidence 8 589999999999999977633
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.58 E-value=0.014 Score=56.37 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=61.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..|||.||+.-++.+.|...|..||+|.. ..++.| ..+++.+-++|+|...-.+.+|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~---------------------av~~vD-~r~k~t~eg~v~~~~k~~a~~a~ 89 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIER---------------------AVAKVD-DRGKPTREGIVEFAKKPNARKAA 89 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccch---------------------heeeec-ccccccccchhhhhcchhHHHHH
Confidence 68999999999999999999999999987 334444 34888899999999999999998
Q ss_pred Hhc--CC--ceECCeEEEEEEec
Q 010771 218 KQA--DG--RKLDGRRVLVDVER 236 (501)
Q Consensus 218 ~~l--~g--~~l~Gr~i~V~~a~ 236 (501)
..+ .| ..+.+.++.|+...
T Consensus 90 rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 90 RRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred HHhccCccccCCCCCccCCChhh
Confidence 766 22 23466777776554
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.41 E-value=0.047 Score=44.10 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=39.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHh
Q 010771 140 LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQ 219 (501)
Q Consensus 140 lfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~ 219 (501)
||---+|.++-..+|.++|+.||.|. |.++-| .-|||...+.+.|..|+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~----------------------VsWi~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY----------------------VSWIND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE----------------------EEEECT-------TEEEEEECCCHHHHHHHHH
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE----------------------EEEEcC-------CcEEEEeecHHHHHHHHHH
Confidence 44444999999999999999999997 555543 3799999999999999877
Q ss_pred cC
Q 010771 220 AD 221 (501)
Q Consensus 220 l~ 221 (501)
+.
T Consensus 62 ~~ 63 (87)
T PF08675_consen 62 LK 63 (87)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.22 E-value=0.018 Score=59.26 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=56.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..||||||++.++..+|..+|...---.+ . -.|+ ..|||||.+.+..-|.+|+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~-g-------------------~fl~-------k~gyafvd~pdq~wa~kai 54 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGS-G-------------------QFLV-------KSGYAFVDCPDQQWANKAI 54 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCC-c-------------------ceee-------ecceeeccCCchhhhhhhH
Confidence 46999999999999999999975411111 0 1122 2489999999999999999
Q ss_pred HhcCCc-eECCeEEEEEEec
Q 010771 218 KQADGR-KLDGRRVLVDVER 236 (501)
Q Consensus 218 ~~l~g~-~l~Gr~i~V~~a~ 236 (501)
+.|+|. .+.|.++.|+++.
T Consensus 55 e~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 55 ETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred HhhchhhhhcCceeeccchh
Confidence 999997 4899999999864
No 131
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.08 E-value=0.091 Score=46.66 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=56.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCH----HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEE
Q 010771 131 NVSGDPYKTLFVARLSYETTE----SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIE 206 (501)
Q Consensus 131 ~~~~~~~~tlfVgnL~~~~te----~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVe 206 (501)
+..++|..||.|.=|..++.. ..|...++.||+|.+|+ +. .+--|.|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT---------------------~c-------GrqsavVv 131 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVT---------------------LC-------GRQSAVVV 131 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceee---------------------ec-------CCceEEEE
Confidence 445667789999876665542 45666778899999943 31 23479999
Q ss_pred EechhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 207 YMHTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 207 f~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|.+..+|=.|+.++.. ..-|..+.+.|..
T Consensus 132 F~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 132 FKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred ehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 9999999999988765 5677778887764
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.06 E-value=0.03 Score=60.88 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
...+|||..||..+++..+..+|...-.|+.. |.|.. .-++...+-|||+|.+++++..
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~--------------------I~lt~-~P~~~~~~~afv~F~~~~a~~~ 491 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF--------------------IELTR-LPTDLLRPAAFVAFIHPTAPLT 491 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhhe--------------------eEecc-CCcccccchhhheeccccccch
Confidence 34689999999999999999999987777661 33332 2467788999999999888888
Q ss_pred HHHhcCCceECCeEEEEEEe
Q 010771 216 AYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a 235 (501)
|+..-.-+.++-+.|+|.-.
T Consensus 492 a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 492 ASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred hhhcccccccCceEEEeech
Confidence 87555555667788888753
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.02 E-value=0.017 Score=58.07 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=59.0
Q ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCC--CC-CCCceEEEEEech
Q 010771 137 YKTLFVARLSYETTESKIK---REFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKE--TN-KPRGYAFIEYMHT 210 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~---~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~--t~-~~~g~aFVef~~~ 210 (501)
..-+||-+|+..+..+.+. +.|.+||.|.. |.+..+.. .+ ....-+||+|...
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~k---------------------i~~~~~~S~~s~~~~~~s~yITy~~~ 135 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINK---------------------IVKNKDPSSSSSSGGTCSVYITYEEE 135 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceE---------------------EeecCCcccccCCCCCCcccccccch
Confidence 4569999999887766654 58889999987 43333321 01 1122489999999
Q ss_pred hhHHHHHHhcCCceECCeEEEEEEec
Q 010771 211 RDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
++|..||...+|+.++|+.|+..+..
T Consensus 136 eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 136 EDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred HhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 99999999999999999997777655
No 134
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.084 Score=56.52 Aligned_cols=103 Identities=22% Similarity=0.358 Sum_probs=68.4
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCcceeeecCCCCCC-----CCCCCCCCCceEEEee---------
Q 010771 132 VSGDPYKTLFVARLSYE-TTESKIKREFESY----GPIKRLICNSCNGGD-----SSRDGKPCDEKVRLVT--------- 192 (501)
Q Consensus 132 ~~~~~~~tlfVgnL~~~-~te~~l~~~F~~~----G~i~~~~~~~~~~~~-----~~~~~~~~~~~v~l~~--------- 192 (501)
..+.+++.|-|.||.|. +...+|.-+|..| |.|.+|.|+...=|- +-++|++..+ +..+-
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el-~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKEL-FKPVEEYKESESDD 247 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhh-ccccccCcccccch
Confidence 34667889999999995 7789999999876 689998887532111 1122221110 00000
Q ss_pred ------------cCCCCCCCc-eEEEEEechhhHHHHHHhcCCceECCeEEEEEEe
Q 010771 193 ------------DKETNKPRG-YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 193 ------------d~~t~~~~g-~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a 235 (501)
...-+..+. ||.|+|.+.+.|.+.+..++|..|......+++-
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 000122222 7999999999999999999999998777777653
No 135
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=0.053 Score=57.78 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=40.9
Q ss_pred EEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceE---CC-eEEEEEEec
Q 010771 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKL---DG-RRVLVDVER 236 (501)
Q Consensus 188 v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l---~G-r~i~V~~a~ 236 (501)
+.|+.|..+..+.|||||-|.+.+++..+++++||+.| .+ +.+.|.||.
T Consensus 419 lYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 419 LYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred EEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 77888888888999999999999999999999999975 33 444566654
No 136
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.13 E-value=0.23 Score=38.00 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=42.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhc----CCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 138 KTLFVARLSYETTESKIKREFESY----GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~----G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..|+|-++. +++.++|+.+|..| ++. . |.++-|. -|-|.|.+...|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~---------------------IEWIdDt-------ScNvvf~d~~~A 55 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-R---------------------IEWIDDT-------SCNVVFKDEETA 55 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-e---------------------EEEecCC-------cEEEEECCHHHH
Confidence 379999986 57889999999998 443 3 7776553 477999999999
Q ss_pred HHHHHhc
Q 010771 214 KAAYKQA 220 (501)
Q Consensus 214 ~~Al~~l 220 (501)
..||.+|
T Consensus 56 ~~AL~~L 62 (62)
T PF10309_consen 56 ARALVAL 62 (62)
T ss_pred HHHHHcC
Confidence 9999765
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.72 E-value=0.17 Score=51.72 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=51.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
.|-+.+||+++|+.+|..||..--+|.-. .+.|-+|+- ..|+..|-|||.|..+++|+.||.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g-----------------~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGG-----------------TEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCC-----------------ccceEEEEC-CCCCcccceEEEecCHHHHHHHHH
Confidence 45567999999999999999743333210 001444443 358999999999999999999995
Q ss_pred hcCCceECCeEEEE
Q 010771 219 QADGRKLDGRRVLV 232 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V 232 (501)
. |-..|+-+.|.|
T Consensus 225 k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 225 K-HRQNIGQRYIEL 237 (508)
T ss_pred H-HHHHHhHHHHHH
Confidence 3 433444444433
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=0.47 Score=47.19 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=52.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.-|-|-++|+.- -..|..+|++||.|.. .| +.....+-+|.|.+.-+|.+||
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvk-----------------------hv----~~~ngNwMhirYssr~~A~KAL 249 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVK-----------------------HV----TPSNGNWMHIRYSSRTHAQKAL 249 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeee-----------------------ee----cCCCCceEEEEecchhHHHHhh
Confidence 356666788743 3678899999999965 33 2345569999999999999999
Q ss_pred HhcCCceECCeEEE-EEEec
Q 010771 218 KQADGRKLDGRRVL-VDVER 236 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~-V~~a~ 236 (501)
..||+.|+|..|. |..+.
T Consensus 250 -skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 250 -SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred -hhcCeeeccceEEeeeecC
Confidence 5799999987543 54443
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.13 E-value=0.31 Score=38.64 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=40.8
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 139 TLFVA-RLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 139 tlfVg-nL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
+|||. +--..++..+|..+|...+.|..-.| -.|.| ...|+||+-.. +.|..++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~I----------------G~I~I--------~~~~S~vev~~-~~a~~v~ 56 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDI----------------GRIDI--------FDNFSFVEVPE-EVAEKVL 56 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGE----------------EEEEE---------SS-EEEEE-T-T-HHHHH
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhE----------------EEEEE--------eeeEEEEEECH-HHHHHHH
Confidence 56662 23346888999999988766654221 11455 23599998875 5888999
Q ss_pred HhcCCceECCeEEEEEEe
Q 010771 218 KQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a 235 (501)
..|++..+.|+.|+|+.|
T Consensus 57 ~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 57 EALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHTT--SSS----EEE-
T ss_pred HHhcCCCCCCeeEEEEEC
Confidence 999999999999999875
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.38 E-value=0.09 Score=52.90 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..+++|||++...+.+.++..+|..+|.+.. +.+.........+++++|.|...+.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~---------------------~~~S~~~~~~~sk~~~s~~f~~ks~~~~ 145 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVD---------------------ARSSSLEDSLSSKGGLSVHFAGKSQFFA 145 (285)
T ss_pred ccccccccccccchhhccccccchhhcCccc---------------------chhhhhccccccccceeeccccHHHHHH
Confidence 4568999999999999999999999998776 4444444567889999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||.......+.+..+...+.....
T Consensus 146 ~l~~s~~~~~~~~~~~~dl~~~~~ 169 (285)
T KOG4210|consen 146 ALEESGSKVLDGNKGEKDLNTRRG 169 (285)
T ss_pred HHHhhhccccccccccCccccccc
Confidence 996444357777777777766544
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.78 E-value=0.45 Score=53.27 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=62.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.+.++.|++...+-..|..+|..||.|.++| .+. .-..|.|+|...+.|..|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~w---------------------tlr------~~N~alvs~~s~~sai~a~ 351 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAW---------------------TLR------DLNMALVSFSSVESAILAL 351 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhhe---------------------ecc------cccchhhhhHHHHHHHHhh
Confidence 4677888888999999999999999999954 222 2357999999999999999
Q ss_pred HhcCCceE--CCeEEEEEEecCC
Q 010771 218 KQADGRKL--DGRRVLVDVERGR 238 (501)
Q Consensus 218 ~~l~g~~l--~Gr~i~V~~a~~~ 238 (501)
.+|+|.++ -|-+.+|.+|+.-
T Consensus 352 dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 352 DALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcCCcccccCCceeEEecccc
Confidence 99999874 6888999998743
No 142
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.42 E-value=1.8 Score=37.19 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=46.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCC-cceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGP-IKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~-i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+.+...|+-++-+.|..+.+.+-. |.. ++|+.+. ..++-.++|+|.+..+|..-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~---------------------~riird~--~pnrymVLikF~~~~~Ad~F 70 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEH---------------------IRIIRDG--TPNRYMVLIKFRDQESADEF 70 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEE---------------------EEEeeCC--CCceEEEEEEECCHHHHHHH
Confidence 34555566666666777665555543 333 7777763 23455788999999999999
Q ss_pred HHhcCCceECC
Q 010771 217 YKQADGRKLDG 227 (501)
Q Consensus 217 l~~l~g~~l~G 227 (501)
+..+||+.++.
T Consensus 71 y~~fNGk~Fns 81 (110)
T PF07576_consen 71 YEEFNGKPFNS 81 (110)
T ss_pred HHHhCCCccCC
Confidence 99999997643
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.37 E-value=0.28 Score=45.78 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=49.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHh-cCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC--CCCCceEEEEEechhhHH
Q 010771 138 KTLFVARLSYETTESKIKREFES-YGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET--NKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~-~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t--~~~~g~aFVef~~~~~a~ 214 (501)
..|.|-+||+++|++++...+.. ++.... |.. +.-.....+ ...-.-|||.|.+.+++.
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~-w~y-----------------~~g~~~~~~~~~~~~SRaYi~F~~~~~~~ 69 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWD-WYY-----------------FQGKYGKKSFKPPTYSRAYINFKNPEDLL 69 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE----EE-----------------EEEEES-SSSTTS--EEEEEEESSCHHHH
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccc-eEE-----------------EecCCCCccCCCCcceEEEEEeCCHHHHH
Confidence 48999999999999988886665 554421 000 221111111 112346999999999999
Q ss_pred HHHHhcCCceECC-----eEEEEEEecC
Q 010771 215 AAYKQADGRKLDG-----RRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~G-----r~i~V~~a~~ 237 (501)
..+..++|..+.+ ....|++|--
T Consensus 70 ~F~~~~~g~~F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 70 EFRDRFDGHVFVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp HHHHHCTTEEEE-TTS-EEEEEEEE-SS
T ss_pred HHHHhcCCcEEECCCCCCcceeEEEcch
Confidence 9999999987632 3456777654
No 144
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.30 E-value=1.1 Score=42.22 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHhcC--CceECCe
Q 010771 151 ESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQAD--GRKLDGR 228 (501)
Q Consensus 151 e~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~--g~~l~Gr 228 (501)
...|..+|..|+.+.. +.++. +-+=..|.|.+.+.|..|...|+ +..+.|.
T Consensus 9 ~~~l~~l~~~~~~~~~---------------------~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~ 61 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQ---------------------FSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGK 61 (184)
T ss_dssp HHHHHHHHHTT-SS-E---------------------EEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTE
T ss_pred HHHHHHHHHhcCCceE---------------------EEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCC
Confidence 4789999999998877 43332 23457899999999999999999 9999999
Q ss_pred EEEEEEecC
Q 010771 229 RVLVDVERG 237 (501)
Q Consensus 229 ~i~V~~a~~ 237 (501)
.|+|.++..
T Consensus 62 ~l~~yf~~~ 70 (184)
T PF04847_consen 62 RLRVYFGQP 70 (184)
T ss_dssp E-EEE----
T ss_pred ceEEEEccc
Confidence 999998853
No 145
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=90.24 E-value=0.25 Score=49.53 Aligned_cols=9 Identities=11% Similarity=0.106 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 010771 151 ESKIKREFE 159 (501)
Q Consensus 151 e~~l~~~F~ 159 (501)
-+-|..||.
T Consensus 129 yCLLYklft 137 (453)
T KOG2888|consen 129 YCLLYKLFT 137 (453)
T ss_pred HHHHHHHHH
Confidence 345555553
No 146
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=89.64 E-value=0.18 Score=50.44 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHhc
Q 010771 148 ETTESKIKREFESY 161 (501)
Q Consensus 148 ~~te~~l~~~F~~~ 161 (501)
.....+|-..|+.|
T Consensus 168 tqpp~dLw~WyEpy 181 (453)
T KOG2888|consen 168 TQPPADLWDWYEPY 181 (453)
T ss_pred cCChhHHHHHhhhh
Confidence 44456677777666
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.78 E-value=1.4 Score=46.22 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=55.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
...|+|-.+|..+|..+|..|+..|- .|.. |+|+.|.. .++=.++|.|.+.++|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~---------------------irivRd~~--pnrymvLIkFr~q~da~~ 130 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISD---------------------IRIVRDGM--PNRYMVLIKFRDQADADT 130 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhhe---------------------eEEeecCC--CceEEEEEEeccchhHHH
Confidence 67899999999999999999998764 5666 88888532 223358899999999999
Q ss_pred HHHhcCCceECC
Q 010771 216 AYKQADGRKLDG 227 (501)
Q Consensus 216 Al~~l~g~~l~G 227 (501)
.+..+||..|..
T Consensus 131 Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 131 FYEEFNGKQFNS 142 (493)
T ss_pred HHHHcCCCcCCC
Confidence 999999998753
No 148
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=87.95 E-value=6.4 Score=37.38 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=17.9
Q ss_pred EEEEEechhhHHHHHH--hcCCceE
Q 010771 203 AFIEYMHTRDMKAAYK--QADGRKL 225 (501)
Q Consensus 203 aFVef~~~~~a~~Al~--~l~g~~l 225 (501)
-|-.=.+.++|.+||. .|+|.+|
T Consensus 61 rf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 61 RFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred EeeecchHHHHHHhhcceeecccee
Confidence 4556677889999986 5799988
No 149
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.67 E-value=0.84 Score=48.93 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh--cCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 137 YKTLFVARLSYETTESKIKREFES--YGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~--~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.|.|+|.-||.++-.++|+.||.. |-++.+ |.+..+ ..=||+|++..+|+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~is---------------------cefa~N-------~nWyITfesd~DAQ 226 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVIS---------------------CEFAHN-------DNWYITFESDTDAQ 226 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCcee---------------------eeeeec-------CceEEEeecchhHH
Confidence 356778899999999999999975 666666 555332 24689999999999
Q ss_pred HHHHhcCC--ceECCeEEE
Q 010771 215 AAYKQADG--RKLDGRRVL 231 (501)
Q Consensus 215 ~Al~~l~g--~~l~Gr~i~ 231 (501)
.|++.|.- ++|.|+.|.
T Consensus 227 qAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 227 QAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred HHHHHHHHHHHhhcCcchh
Confidence 99886632 235555543
No 150
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.58 E-value=5.5 Score=30.93 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceECC
Q 010771 148 ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDG 227 (501)
Q Consensus 148 ~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~G 227 (501)
.++-++|+..+..|+-. .|..+. .| -||.|.+..+|++++...+|+.+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~------------------------~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD------------------------RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc------------------------eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 46788999999999753 333332 23 4799999999999999999999988
Q ss_pred eEEEE
Q 010771 228 RRVLV 232 (501)
Q Consensus 228 r~i~V 232 (501)
..|.+
T Consensus 61 y~m~M 65 (66)
T PF11767_consen 61 YRMQM 65 (66)
T ss_pred EEEEe
Confidence 88765
No 151
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=79.83 E-value=11 Score=39.24 Aligned_cols=102 Identities=22% Similarity=0.382 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCcceeeecCCCCCCC-----CCCCCCCC--------c--------
Q 010771 133 SGDPYKTLFVARLSYE-TTESKIKREFESY----GPIKRLICNSCNGGDS-----SRDGKPCD--------E-------- 186 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~-~te~~l~~~F~~~----G~i~~~~~~~~~~~~~-----~~~~~~~~--------~-------- 186 (501)
.+.+++.|-|-||.|. +...+|..+|+.| |+|..|.|+...=|-+ -.++.|+. +
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3677889999999994 7778999999876 6788788775221111 01111110 0
Q ss_pred eEEEeecC--------CCC--------------CC-CceEEEEEechhhHHHHHHhcCCceECCeEEEEEE
Q 010771 187 KVRLVTDK--------ETN--------------KP-RGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDV 234 (501)
Q Consensus 187 ~v~l~~d~--------~t~--------------~~-~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~ 234 (501)
.+..-.+. ..| .. --||.|+|.+.+.++..+..++|..+......+++
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DL 292 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDL 292 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeee
Confidence 00000000 000 01 12799999999999999999999998765544443
No 152
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=78.43 E-value=29 Score=39.11 Aligned_cols=74 Identities=8% Similarity=0.020 Sum_probs=51.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 139 TLFVA-RLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 139 tlfVg-nL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++||. +-...++...|..++..-+.|..-.| -.|.|. ..|.||+... ..|...+
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~i----------------g~i~i~--------~~~s~v~~~~-~~~~~~~ 542 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYI----------------GNIKLF--------ASHSTIELPK-GMPGEVL 542 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhC----------------CcEEEe--------CCceEEEcCh-hhHHHHH
Confidence 35542 22336888888888877666654221 125552 3589999875 4678888
Q ss_pred HhcCCceECCeEEEEEEecC
Q 010771 218 KQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~ 237 (501)
..|++..|.|+.|.|+.+..
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 543 QHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred HHhccccccCCceEEEECCC
Confidence 89999999999999998753
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.98 E-value=0.88 Score=44.70 Aligned_cols=38 Identities=21% Similarity=0.517 Sum_probs=28.5
Q ss_pred CCCCCEEEEcCCCCC------------CCHHHHHHHHHhcCCcceeeecC
Q 010771 134 GDPYKTLFVARLSYE------------TTESKIKREFESYGPIKRLICNS 171 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~------------~te~~l~~~F~~~G~i~~~~~~~ 171 (501)
+.-..|||+.+||-. -++.-|...|+.||.|..|.|.-
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 444568999888753 34677999999999999866543
No 154
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=77.48 E-value=0.3 Score=46.43 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=57.7
Q ss_pred CCEEEEcC----CCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 137 YKTLFVAR----LSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 137 ~~tlfVgn----L~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+++.|| |...++++.+...|+..|+|.. +.+..+.. |.+..++||++.-.-+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~---------------------~R~~~~~d-~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEG---------------------VRIPTDND-GRNRNFGFVTYQRLCA 137 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCC---------------------cccccccc-CCccCccchhhhhhhc
Confidence 35788898 8888999999999999999998 66666644 8899999999998888
Q ss_pred HHHHHHhcCCceECCeE
Q 010771 213 MKAAYKQADGRKLDGRR 229 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~ 229 (501)
+-.|+....+..+.-++
T Consensus 138 ~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 138 VPFALDLYQGLELFQKK 154 (267)
T ss_pred CcHHhhhhcccCcCCCC
Confidence 88888877776554443
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.86 E-value=39 Score=35.30 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=46.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+-...|-|-++|...-.++|...|+.|+.--. . |++|-|. .||-.|.+...|
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgf-d-------------------IkWvDdt-------halaVFss~~~A 440 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGF-D-------------------IKWVDDT-------HALAVFSSVNRA 440 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCc-e-------------------eEEeecc-------eeEEeecchHHH
Confidence 334568999999999999999999999986432 1 6666553 799999999999
Q ss_pred HHHHH
Q 010771 214 KAAYK 218 (501)
Q Consensus 214 ~~Al~ 218 (501)
..||-
T Consensus 441 aeaLt 445 (528)
T KOG4483|consen 441 AEALT 445 (528)
T ss_pred HHHhh
Confidence 99994
No 156
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=76.22 E-value=1.2 Score=47.52 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=19.6
Q ss_pred CCCChhhhcccCCCCCCCCCCCCCCCCCCCC
Q 010771 40 TGLTANLLKLFEPRAPLEYKPPPEKRKCPPL 70 (501)
Q Consensus 40 ~~~~~~~l~lf~p~pp~~~~pp~~~~~~~p~ 70 (501)
+|-+.+++-+|-....|..+|++....+.|.
T Consensus 67 QGd~~n~idrFDvRAhLdhi~~vd~t~~~p~ 97 (653)
T KOG2548|consen 67 QGDSTNQIDRFDVRAHLDHIPEVDSTSVRPH 97 (653)
T ss_pred cccccchhhhhhhHhhhccCCccCCCccCCC
Confidence 3444556677888877877777664444433
No 157
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.92 E-value=7.7 Score=38.49 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=24.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCc
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPI 164 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i 164 (501)
.-|||+||+.++...+|+..+.+.|.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC
Confidence 459999999999999999999987754
No 158
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=70.82 E-value=11 Score=29.53 Aligned_cols=61 Identities=21% Similarity=0.383 Sum_probs=45.1
Q ss_pred HHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceECCeEE
Q 010771 152 SKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 230 (501)
Q Consensus 152 ~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i 230 (501)
++|.+.|..+| ++.. |..+....+..+....||+.....+... .|+=+.|+|..|
T Consensus 2 ~~I~~~L~~~G~~v~~---------------------i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V 57 (69)
T smart00596 2 SQIEEALKDIGFPVLF---------------------IHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRV 57 (69)
T ss_pred HHHHHHHHHcCCceeE---------------------EEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeE
Confidence 46888999988 6666 6666666667788889999987766555 355677899998
Q ss_pred EEEEec
Q 010771 231 LVDVER 236 (501)
Q Consensus 231 ~V~~a~ 236 (501)
.|+-..
T Consensus 58 ~VEr~~ 63 (69)
T smart00596 58 TVERPH 63 (69)
T ss_pred EEecCc
Confidence 887543
No 159
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.38 E-value=12 Score=29.20 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=44.3
Q ss_pred HHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCceECCeEE
Q 010771 152 SKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRV 230 (501)
Q Consensus 152 ~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i 230 (501)
++|.+.|...| +|.. |.-+....++.+....||++....+...+ |+=..|++..|
T Consensus 2 ~~I~~~L~~~G~~v~~---------------------i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V 57 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRN---------------------IHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRV 57 (68)
T ss_pred HHHHHHHHHcCCceEE---------------------EEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEE
Confidence 46788888888 6665 55555556677788899999877664443 45567899998
Q ss_pred EEEEecC
Q 010771 231 LVDVERG 237 (501)
Q Consensus 231 ~V~~a~~ 237 (501)
.|+....
T Consensus 58 ~vE~~~k 64 (68)
T PF07530_consen 58 KVERPRK 64 (68)
T ss_pred EEecCCC
Confidence 8887653
No 160
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.54 E-value=4.7 Score=34.99 Aligned_cols=55 Identities=18% Similarity=0.416 Sum_probs=30.7
Q ss_pred EEEEcCCCCCC---------CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 139 TLFVARLSYET---------TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 139 tlfVgnL~~~~---------te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
++.|.|++... +.+.|.+.|..|.+++ |+.+.+. ..+.|+++|+|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k----------------------v~~l~~~--~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK----------------------VKPLYGK--QGHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE----------------------EEEEEET--TEEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce----------------------eEECcCC--CCCcEEEEEEECC
Confidence 67788886643 4588999999999886 5555553 3467899999985
Q ss_pred h-hhHHHHH
Q 010771 210 T-RDMKAAY 217 (501)
Q Consensus 210 ~-~~a~~Al 217 (501)
. .-...|+
T Consensus 66 ~w~Gf~~A~ 74 (116)
T PF03468_consen 66 DWSGFKNAM 74 (116)
T ss_dssp SHHHHHHHH
T ss_pred ChHHHHHHH
Confidence 4 3344444
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.87 E-value=0.64 Score=49.79 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=56.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||.|++++++-++|..++..+--+.. +.+..+.......-+++|+|.-.-.+..|
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lr---------------------fals~~~aek~~~r~lwv~fk~~~ni~~a 289 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLR---------------------FALSTINAEKNFERRLWVTFKRGTNIKEA 289 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchhee---------------------eeccCchHHHHHHHHhhHhhccccchHHH
Confidence 468999999999999999999998765555 33433323344556889999999999999
Q ss_pred HHhcCCceECCeEEE
Q 010771 217 YKQADGRKLDGRRVL 231 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~ 231 (501)
+-+||+..|....+.
T Consensus 290 ~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 290 CWALNGIRLRSNFLS 304 (648)
T ss_pred HHHhhhccccccccc
Confidence 999999877654443
No 162
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.38 E-value=5.6 Score=36.99 Aligned_cols=76 Identities=9% Similarity=0.119 Sum_probs=53.0
Q ss_pred CCCCEEEEcCCCCCCCH-----HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 135 DPYKTLFVARLSYETTE-----SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te-----~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
+...++++.+|+..+.. .....+|.+|-+... ..++ ++.++.-|-|.+
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~---------------------fq~l------rsfrrvRi~f~~ 60 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDAT---------------------FQLL------RSFRRVRINFSN 60 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchH---------------------HHHH------HhhceeEEeccC
Confidence 44567889999886543 233455665555443 2222 234556688999
Q ss_pred hhhHHHHHHhcCCceECCe-EEEEEEecC
Q 010771 210 TRDMKAAYKQADGRKLDGR-RVLVDVERG 237 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr-~i~V~~a~~ 237 (501)
.+.|..|...+++..|.|. .|+.-++..
T Consensus 61 p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 61 PEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred hhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 9999999999999999998 788877763
No 163
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=63.93 E-value=6.4 Score=43.70 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=7.3
Q ss_pred ECCeEEEEEE
Q 010771 225 LDGRRVLVDV 234 (501)
Q Consensus 225 l~Gr~i~V~~ 234 (501)
|+|.+|.|+.
T Consensus 633 ldgipm~~e~ 642 (877)
T KOG0151|consen 633 LDGIPMMVET 642 (877)
T ss_pred ccCceeeeee
Confidence 6778877765
No 164
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=63.78 E-value=4.6 Score=39.50 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=49.8
Q ss_pred EEEEcCCCCCCCHHH-H--HHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 139 TLFVARLSYETTESK-I--KREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 139 tlfVgnL~~~~te~~-l--~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
.+|++|+-..+..+- | ...|+.|-.+.. .+++.+. .+...++||+.|.......+
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~k---------------------tk~v~~~-p~~~~~~~~~~~k~s~a~~k 155 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVK---------------------TKLVRDR-PQPIRPEAFESFKASDALLK 155 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhh---------------------hhhhhcC-CCccCcccccCcchhhhhhh
Confidence 466777766666554 2 455655554444 5666664 36678899999998888888
Q ss_pred HHHhcCCceECCeEEEEE
Q 010771 216 AYKQADGRKLDGRRVLVD 233 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~ 233 (501)
+-..-+++.|+-..|++.
T Consensus 156 ~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 156 AETEKEKKKIGKPPVRLA 173 (290)
T ss_pred hccccccccccCcceeec
Confidence 877667777777766654
No 165
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=63.66 E-value=19 Score=36.12 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=5.3
Q ss_pred EEEechhhHHH
Q 010771 205 IEYMHTRDMKA 215 (501)
Q Consensus 205 Vef~~~~~a~~ 215 (501)
|-|.+.++-..
T Consensus 109 LnydT~EskLr 119 (335)
T KOG0113|consen 109 LNYDTSESKLR 119 (335)
T ss_pred ccccccHHHHH
Confidence 34555554433
No 166
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=59.74 E-value=13 Score=37.71 Aligned_cols=6 Identities=0% Similarity=0.434 Sum_probs=2.4
Q ss_pred ChhHHH
Q 010771 72 GMAQFV 77 (501)
Q Consensus 72 ~~~~~~ 77 (501)
+++.++
T Consensus 91 nVFh~L 96 (367)
T KOG0835|consen 91 NVFHYL 96 (367)
T ss_pred HHHHHH
Confidence 344443
No 167
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=58.56 E-value=12 Score=37.92 Aligned_cols=6 Identities=33% Similarity=0.944 Sum_probs=2.5
Q ss_pred EEEEEe
Q 010771 203 AFIEYM 208 (501)
Q Consensus 203 aFVef~ 208 (501)
.||-|.
T Consensus 176 v~vry~ 181 (367)
T KOG0835|consen 176 VFVRYS 181 (367)
T ss_pred eeeecC
Confidence 344443
No 168
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=55.99 E-value=1.1 Score=46.46 Aligned_cols=75 Identities=12% Similarity=0.256 Sum_probs=60.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
+.+-|-|+|+...|+.|..++..||.|.. |.++. |..-....-|+|...+.+..||
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~---------------------~eqvn---t~~etavvnvty~~~~~~~~ai 136 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVEN---------------------CEQVN---TDSETAVVNVTYSAQQQHRQAI 136 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhH---------------------hhhhc---cchHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999988 43321 1222233447899999999999
Q ss_pred HhcCCceECCeEEEEEEec
Q 010771 218 KQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~ 236 (501)
..|+|..|....++|.|-.
T Consensus 137 ~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 137 HKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HhhcchHhhhhhhhcccCc
Confidence 9999999999999998753
No 169
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=51.78 E-value=8.1 Score=42.59 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=51.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.+||+.|-....+..-+..+|..+++++. ++++.....+...+-||++|.....++.|.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk---------------------~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~ 570 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTK---------------------AKILTRCKYGPACTSAECEFAHPTAAENAK 570 (681)
T ss_pred CceecccccccCCCcchhhCccccccccc---------------------ceeeccccCCCcCCchhhhhcCCcchhhhh
Confidence 36777776666666666777777777766 666666566666679999999999987776
Q ss_pred HhcCCceECCeEEEE
Q 010771 218 KQADGRKLDGRRVLV 232 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V 232 (501)
.|.+..+....+++
T Consensus 571 -s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 571 -SLPNKKFASKCLKS 584 (681)
T ss_pred -ccccccccccceec
Confidence 56776666555544
No 170
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=50.36 E-value=22 Score=33.75 Aligned_cols=33 Identities=30% Similarity=0.451 Sum_probs=29.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcce
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKR 166 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~ 166 (501)
.....++++++++..++...+..+|..+|.|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVR 254 (306)
T ss_pred ccccceeeccccccccchhHHHHhcccccccee
Confidence 445678999999999999999999999999966
No 171
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=49.05 E-value=79 Score=29.52 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=10.2
Q ss_pred EechhhHHHHHHh--cCCceE
Q 010771 207 YMHTRDMKAAYKQ--ADGRKL 225 (501)
Q Consensus 207 f~~~~~a~~Al~~--l~g~~l 225 (501)
-.+.++|..+|.. |.|..|
T Consensus 57 ~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 57 PRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred cccHHHHHhhcCCccccCceE
Confidence 3455666666653 346443
No 172
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.60 E-value=16 Score=43.01 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcce
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKR 166 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~ 166 (501)
+...++++|--+-..+..+.|..+.+.++...+
T Consensus 69 g~kak~~~v~t~ka~~PpeHLrki~~~~sdm~s 101 (2365)
T COG5178 69 GNKAKTLHVLTLKAPIPPEHLRKIQSPCSDMPS 101 (2365)
T ss_pred hhhhhheeeeccCCCCCHHHHHhhhCccccchh
Confidence 334566777777777777777777777765544
No 173
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.52 E-value=36 Score=26.06 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCcceee
Q 010771 152 SKIKREFESYGPIKRLI 168 (501)
Q Consensus 152 ~~l~~~F~~~G~i~~~~ 168 (501)
.+|+++|+..|+|.-+-
T Consensus 9 ~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHhcCcEEEEE
Confidence 67999999999997633
No 174
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=41.65 E-value=42 Score=33.69 Aligned_cols=77 Identities=13% Similarity=0.305 Sum_probs=54.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecC-------CCCCCCceEEEEEech
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDK-------ETNKPRGYAFIEYMHT 210 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~-------~t~~~~g~aFVef~~~ 210 (501)
+.|...||...++-..+...|.+||+|.+ |.|+.+. ...+......+.|-+.
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIES---------------------iYL~~~~~~~~d~~~~d~~~~SilLSFlsr 74 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIES---------------------IYLIKSNDKPSDDYNDDKNNQSILLSFLSR 74 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeE---------------------EEEecCCCcccccccccccceEEEEeeech
Confidence 45889999999999999999999999999 7777654 1122345678899988
Q ss_pred hhHHHHHHh----cCC--ceECCeEEEEEEe
Q 010771 211 RDMKAAYKQ----ADG--RKLDGRRVLVDVE 235 (501)
Q Consensus 211 ~~a~~Al~~----l~g--~~l~Gr~i~V~~a 235 (501)
+.|...+.. |.. +.|....|.|.+.
T Consensus 75 ~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV 105 (309)
T PF10567_consen 75 EICLDFYNNVLQRLSEFKTKLKSESLTLSFV 105 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceeEEEE
Confidence 877665432 211 2355666666654
No 175
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.01 E-value=53 Score=26.90 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEe
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYM 208 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~ 208 (501)
..-|||||++..+.+.-...+.+..+.=. +.|+.. +....||+|-++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~----------------------a~m~~~--~~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGS----------------------AVMVWS--DNNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCcc----------------------EEEEEc--cCCCCCEEEEEeC
Confidence 34699999999888876666666543322 333332 2338899998884
No 176
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=38.74 E-value=30 Score=28.40 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh
Q 010771 137 YKTLFVARLSYETTESKIKREFES 160 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~ 160 (501)
..-||||+++..+.+.--..+-+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~ 48 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQH 48 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHh
Confidence 346999999998876544444443
No 177
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.08 E-value=5.2 Score=41.97 Aligned_cols=78 Identities=5% Similarity=-0.159 Sum_probs=58.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
+..|+..|+..+++.++.-+|..||.|.- +.+..-...+-..-.+||.... .++..+|
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~---------------------~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i 61 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISM---------------------EDGSPYVNGSLGEVTPFQHAKK-ANGPNYI 61 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceee---------------------ccCCccccCCcceeeeeeeeec-cCccccc
Confidence 35788899999999999999999999877 3332222334445577777654 5677788
Q ss_pred HhcCCceECCeEEEEEEecC
Q 010771 218 KQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~ 237 (501)
..+.-..+.|..++|.++..
T Consensus 62 ~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 62 QPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred CHHHHhhhhhhhhhhhcCch
Confidence 77777788899999988764
No 178
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=35.62 E-value=16 Score=41.31 Aligned_cols=10 Identities=10% Similarity=0.198 Sum_probs=6.2
Q ss_pred CEEEEcCCCC
Q 010771 138 KTLFVARLSY 147 (501)
Q Consensus 138 ~tlfVgnL~~ 147 (501)
..+|+|++..
T Consensus 146 qR~f~gvvtk 155 (1194)
T KOG4246|consen 146 QRRFAGVVTK 155 (1194)
T ss_pred ceeeehhhhh
Confidence 4677776544
No 179
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.14 E-value=43 Score=32.59 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=28.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceee
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLI 168 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~ 168 (501)
...+||+-|||..+|++.|..+.+.+|-+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 346899999999999999999999999776643
No 180
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=30.49 E-value=81 Score=26.47 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=31.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT 210 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~ 210 (501)
..-||||+++..+.+.--..+-+.++. -. +.|+.. ++...||+|.++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~---------------------avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GN---------------------VVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-Cc---------------------EEEEEc--CCCCCCcEEEecCCC
Confidence 346999999998877655555554443 12 333332 234459999988765
No 181
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=29.79 E-value=27 Score=39.69 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=7.7
Q ss_pred CCCCCCCceEEEE
Q 010771 194 KETNKPRGYAFIE 206 (501)
Q Consensus 194 ~~t~~~~g~aFVe 206 (501)
..|...-.|+||.
T Consensus 152 vvtk~~DtygfVD 164 (1194)
T KOG4246|consen 152 VVTKQTDTYGFVD 164 (1194)
T ss_pred hhhhhcccccccc
Confidence 3445555677774
No 182
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=28.98 E-value=33 Score=40.49 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=5.9
Q ss_pred CEEEEcCCCC
Q 010771 138 KTLFVARLSY 147 (501)
Q Consensus 138 ~tlfVgnL~~ 147 (501)
+.-|+|.|.+
T Consensus 108 krs~lgalky 117 (2365)
T COG5178 108 KRSYLGALKY 117 (2365)
T ss_pred hHhhhhhhhh
Confidence 4566666654
No 183
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=28.32 E-value=88 Score=30.54 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=23.7
Q ss_pred CCCceEEEEEe-chhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 198 KPRGYAFIEYM-HTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 198 ~~~g~aFVef~-~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
...|||.-... +.++...+|..+.+..+.-..|.|.+++
T Consensus 77 sy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhST 116 (299)
T KOG4840|consen 77 SYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHST 116 (299)
T ss_pred cccccccccccccHHHHHHHHHHhhccCcccceEEEecCc
Confidence 34455544433 5677777887666666555666666654
No 184
>PRK11901 hypothetical protein; Reviewed
Probab=28.01 E-value=4.3e+02 Score=27.13 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=35.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEE--EEechhhHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFI--EYMHTRDMKA 215 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFV--ef~~~~~a~~ 215 (501)
-||-|..+ ..++.|..|...++ +.. +.|+.-...|+. -|..| .|.+.++|..
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~---------------------~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~ 299 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSH---------------------YHVYETKRDGKP-WYVLVSGNYASSAEAKR 299 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCc---------------------eEEEEEEECCce-EEEEEecCcCCHHHHHH
Confidence 35555554 45777888877775 444 223222222322 24433 5899999999
Q ss_pred HHHhcCC
Q 010771 216 AYKQADG 222 (501)
Q Consensus 216 Al~~l~g 222 (501)
||..|--
T Consensus 300 Ai~sLPa 306 (327)
T PRK11901 300 AIATLPA 306 (327)
T ss_pred HHHhCCH
Confidence 9988743
No 185
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.46 E-value=1.9e+02 Score=21.16 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=38.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech----hhHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT----RDMK 214 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~----~~a~ 214 (501)
||.|.||.=......|...+...-.|.. +.+ ....+-+-|.|... +.+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~---------------------v~v------d~~~~~v~v~~~~~~~~~~~i~ 53 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKS---------------------VKV------DLETKTVTVTYDPDKTSIEKII 53 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEE---------------------EEE------ETTTTEEEEEESTTTSCHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcE---------------------EEE------ECCCCEEEEEEecCCCCHHHHH
Confidence 6888888888888999999998877777 444 22346778888754 4566
Q ss_pred HHHHh
Q 010771 215 AAYKQ 219 (501)
Q Consensus 215 ~Al~~ 219 (501)
++|..
T Consensus 54 ~~i~~ 58 (62)
T PF00403_consen 54 EAIEK 58 (62)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 186
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.14 E-value=58 Score=33.90 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=46.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeec-C-CCCCCCceEEEEEechhhHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTD-K-ETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d-~-~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.|.|-+||+..++.+|.+.+..|-.-.. | ..+... . .-....++|||-|...+++..
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~-~-------------------~~F~~a~~s~~~~~ysrayinFk~~~dv~e 67 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVN-W-------------------EFFAKADESLRNHKYSRAYINFKNPEDVEE 67 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccc-h-------------------heeccccccchhhhhhhhhhccccHHHHHH
Confidence 47889999999999988877766532221 0 111100 0 012235689999999999998
Q ss_pred HHHhcCCceE
Q 010771 216 AYKQADGRKL 225 (501)
Q Consensus 216 Al~~l~g~~l 225 (501)
....++|+.+
T Consensus 68 f~~~f~g~if 77 (376)
T KOG1295|consen 68 FRRRFDGYIF 77 (376)
T ss_pred HHhhCCceEE
Confidence 8888999875
No 187
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=27.13 E-value=36 Score=25.41 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=21.7
Q ss_pred CCCceEEEEEec-hhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 198 KPRGYAFIEYMH-TRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 198 ~~~g~aFVef~~-~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
..+|||||...+ ..++--+-..|++ .++|-.|.|.+..
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEec
Confidence 368999999886 4444434445554 3567777777765
No 188
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=72 Score=31.71 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcce
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKR 166 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~ 166 (501)
.....|+||||+++..-|..++...-.+..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~ 124 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQD 124 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccce
Confidence 347889999999999999999887555433
No 189
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=22.39 E-value=1.1e+02 Score=34.83 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=2.7
Q ss_pred ccchhhh
Q 010771 9 MRNQNAA 15 (501)
Q Consensus 9 ~~~~~~a 15 (501)
+.|...+
T Consensus 89 ~~n~~~t 95 (894)
T KOG0132|consen 89 SKNFTGT 95 (894)
T ss_pred chhHHHH
Confidence 3443333
No 190
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.90 E-value=1e+02 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCCCceEEEEEechhhHHHHHHhcCCce
Q 010771 197 NKPRGYAFIEYMHTRDMKAAYKQADGRK 224 (501)
Q Consensus 197 ~~~~g~aFVef~~~~~a~~Al~~l~g~~ 224 (501)
...+||-|||=.+..++..||..+.+..
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4489999999999999999998776654
No 191
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.73 E-value=3.7e+02 Score=21.84 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 140 LFVARLSYETTESKIKREFES-YG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 140 lfVgnL~~~~te~~l~~~F~~-~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.|+-.....++..+|+..++. || .|.. |..+.-+ ...-=|||.|.....|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~---------------------VnT~~~~---~~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEK---------------------VNTLITP---KGEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEE---------------------EEeEEcC---CCcEEEEEEeCCCCcHHHHH
Confidence 445557888999999999988 55 4444 3333221 12235999999888887765
Q ss_pred Hh
Q 010771 218 KQ 219 (501)
Q Consensus 218 ~~ 219 (501)
..
T Consensus 79 ~k 80 (84)
T PRK14548 79 SR 80 (84)
T ss_pred Hh
Confidence 43
Done!