Query 010771
Match_columns 501
No_of_seqs 474 out of 3104
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 100.0 3.9E-39 1.3E-43 339.9 32.2 198 40-261 3-205 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 2.9E-20 9.8E-25 156.0 10.3 81 136-237 18-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.8 2.5E-19 8.6E-24 153.2 10.6 82 135-237 4-85 (110)
4 1u6f_A Tcubp1, RNA-binding pro 99.8 4.9E-19 1.7E-23 157.2 12.8 87 133-240 38-124 (139)
5 2lxi_A RNA-binding protein 10; 99.8 2.1E-19 7.3E-24 148.3 8.2 83 137-240 1-85 (91)
6 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.2E-23 148.7 14.2 87 133-241 13-99 (116)
7 2dnm_A SRP46 splicing factor; 99.8 6.9E-19 2.4E-23 148.1 11.1 86 133-239 9-94 (103)
8 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.4E-19 2.9E-23 147.2 11.2 88 134-242 9-96 (102)
9 2lkz_A RNA-binding protein 5; 99.8 3.4E-19 1.2E-23 148.3 8.6 81 136-237 8-94 (95)
10 2cq0_A Eukaryotic translation 99.8 9.5E-19 3.2E-23 147.2 11.1 90 130-240 8-97 (103)
11 1x5t_A Splicing factor 3B subu 99.8 1.2E-18 4.1E-23 144.4 11.5 84 136-240 4-88 (96)
12 2dnz_A Probable RNA-binding pr 99.8 9.7E-19 3.3E-23 144.7 10.8 84 136-240 4-87 (95)
13 2dgs_A DAZ-associated protein 99.8 1.3E-18 4.5E-23 145.3 11.5 86 134-241 7-92 (99)
14 1whw_A Hypothetical protein ri 99.8 1.6E-18 5.4E-23 144.7 12.0 85 135-240 6-90 (99)
15 3bs9_A Nucleolysin TIA-1 isofo 99.8 9.5E-19 3.3E-23 142.3 10.1 82 136-238 5-86 (87)
16 2cpz_A CUG triplet repeat RNA- 99.8 1.6E-18 5.5E-23 148.8 11.5 87 133-240 21-107 (115)
17 1x5u_A Splicing factor 3B subu 99.8 1.8E-18 6.3E-23 145.8 11.6 88 131-239 9-96 (105)
18 2dgo_A Cytotoxic granule-assoc 99.8 5.8E-18 2E-22 145.3 14.1 86 134-240 12-97 (115)
19 2x1f_A MRNA 3'-END-processing 99.8 2E-18 6.7E-23 143.5 10.7 83 136-239 1-83 (96)
20 3ex7_B RNA-binding protein 8A; 99.8 9E-19 3.1E-23 152.8 9.1 85 135-240 20-104 (126)
21 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.6E-18 8.7E-23 155.7 12.4 85 134-239 36-120 (156)
22 2fy1_A RNA-binding motif prote 99.8 2.9E-18 9.9E-23 147.9 12.0 83 135-239 5-87 (116)
23 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-18 8.1E-23 144.4 11.0 86 134-240 9-94 (102)
24 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.7E-18 5.8E-23 140.1 9.8 81 135-236 5-85 (85)
25 2e5h_A Zinc finger CCHC-type a 99.8 3E-18 1E-22 141.5 11.4 83 133-236 12-94 (94)
26 2dng_A Eukaryotic translation 99.8 3.2E-18 1.1E-22 144.1 11.6 85 133-240 11-95 (103)
27 2cpf_A RNA binding motif prote 99.8 1.9E-18 6.4E-23 143.9 10.1 85 135-240 3-90 (98)
28 3md1_A Nuclear and cytoplasmic 99.8 2.1E-18 7.3E-23 138.9 10.0 80 138-238 2-81 (83)
29 2cqc_A Arginine/serine-rich sp 99.8 2.7E-18 9.1E-23 142.0 10.7 85 132-237 10-94 (95)
30 1x4h_A RNA-binding protein 28; 99.8 3.7E-18 1.3E-22 145.4 11.6 86 134-240 12-103 (111)
31 2dgp_A Bruno-like 4, RNA bindi 99.8 3.4E-18 1.2E-22 144.4 11.1 86 133-239 9-97 (106)
32 3p5t_L Cleavage and polyadenyl 99.8 3.8E-19 1.3E-23 146.1 4.9 82 138-240 2-85 (90)
33 2cpe_A RNA-binding protein EWS 99.8 4.3E-18 1.5E-22 145.6 11.6 93 134-239 12-104 (113)
34 2cph_A RNA binding motif prote 99.8 4.1E-18 1.4E-22 144.1 11.3 87 133-240 11-99 (107)
35 2cq3_A RNA-binding protein 9; 99.8 1.1E-17 3.8E-22 140.6 13.7 87 134-243 12-98 (103)
36 1wi8_A EIF-4B, eukaryotic tran 99.7 4.8E-18 1.7E-22 143.2 11.2 84 134-240 12-96 (104)
37 2div_A TRNA selenocysteine ass 99.7 3.1E-18 1E-22 142.9 9.9 84 134-238 6-94 (99)
38 1p27_B RNA-binding protein 8A; 99.7 2.1E-18 7.1E-23 145.8 8.8 84 135-239 21-104 (106)
39 2d9p_A Polyadenylate-binding p 99.7 3.8E-18 1.3E-22 143.5 10.0 85 133-240 11-95 (103)
40 2do4_A Squamous cell carcinoma 99.7 6.1E-18 2.1E-22 141.4 11.2 84 134-239 14-97 (100)
41 1oo0_B CG8781-PA, drosophila Y 99.7 4.6E-18 1.6E-22 144.7 10.3 84 135-239 24-107 (110)
42 2cqp_A RNA-binding protein 12; 99.7 4.3E-18 1.5E-22 141.8 9.8 85 133-238 11-95 (98)
43 2dnh_A Bruno-like 5, RNA bindi 99.7 6.2E-18 2.1E-22 142.6 10.4 85 134-240 12-99 (105)
44 2khc_A Testis-specific RNP-typ 99.7 7.3E-18 2.5E-22 145.3 10.8 82 134-236 37-118 (118)
45 3s7r_A Heterogeneous nuclear r 99.7 8.6E-18 3E-22 136.7 10.6 80 134-235 8-87 (87)
46 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.3E-17 7.9E-22 138.7 13.6 84 133-239 11-94 (103)
47 3ulh_A THO complex subunit 4; 99.7 8.4E-18 2.9E-22 142.3 10.7 81 134-236 26-106 (107)
48 3ns6_A Eukaryotic translation 99.7 9.1E-19 3.1E-23 147.0 4.5 81 136-237 5-92 (100)
49 2jrs_A RNA-binding protein 39; 99.7 4.3E-18 1.5E-22 145.0 8.7 84 134-238 23-106 (108)
50 2dh8_A DAZ-associated protein 99.7 9E-18 3.1E-22 141.7 10.6 86 133-240 12-97 (105)
51 2rs2_A Musashi-1, RNA-binding 99.7 9.3E-18 3.2E-22 143.1 10.6 85 133-239 21-105 (109)
52 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-17 5.1E-22 138.3 11.6 81 136-240 8-92 (96)
53 4f25_A Polyadenylate-binding p 99.7 6.2E-18 2.1E-22 145.5 9.5 80 137-239 5-84 (115)
54 3ucg_A Polyadenylate-binding p 99.7 1.3E-17 4.5E-22 136.0 10.9 78 138-237 7-84 (89)
55 2do0_A HnRNP M, heterogeneous 99.7 3.1E-17 1.1E-21 140.4 13.4 83 133-237 11-93 (114)
56 4a8x_A RNA-binding protein wit 99.7 9.1E-18 3.1E-22 136.6 9.5 81 136-237 3-84 (88)
57 1x4a_A Splicing factor, argini 99.7 3E-17 1E-21 139.5 12.9 83 133-239 18-100 (109)
58 1x4c_A Splicing factor, argini 99.7 4.1E-17 1.4E-21 138.6 13.8 76 136-239 14-94 (108)
59 2cq4_A RNA binding motif prote 99.7 6E-18 2.1E-22 145.0 8.6 80 137-238 25-104 (114)
60 2cpi_A CCR4-NOT transcription 99.7 7.8E-18 2.7E-22 143.9 9.2 88 132-240 10-103 (111)
61 2kxn_B Transformer-2 protein h 99.7 5.4E-18 1.8E-22 149.1 8.3 86 132-238 41-126 (129)
62 2dgu_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 137.4 13.2 77 135-240 9-85 (103)
63 2dhg_A TRNA selenocysteine ass 99.7 9.4E-18 3.2E-22 141.2 9.4 83 135-239 7-91 (104)
64 3n9u_C Cleavage and polyadenyl 99.7 1.1E-17 3.7E-22 152.0 10.3 80 137-237 55-136 (156)
65 2cqg_A TDP-43, TAR DNA-binding 99.7 3.8E-17 1.3E-21 137.3 12.9 85 133-240 11-95 (103)
66 2ywk_A Putative RNA-binding pr 99.7 1.1E-17 3.9E-22 138.3 9.4 82 134-237 13-94 (95)
67 1x4b_A Heterogeneous nuclear r 99.7 9.1E-18 3.1E-22 144.3 9.0 82 137-240 27-108 (116)
68 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.4E-22 141.1 10.7 87 130-239 22-108 (109)
69 1sjq_A Polypyrimidine tract-bi 99.7 1.3E-17 4.4E-22 141.0 9.5 80 135-241 14-95 (105)
70 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.8E-18 9.5E-23 143.8 5.3 84 132-238 14-98 (100)
71 2ek1_A RNA-binding protein 12; 99.7 7E-18 2.4E-22 139.5 7.3 80 136-236 14-93 (95)
72 2m2b_A RNA-binding protein 10; 99.7 7.6E-18 2.6E-22 148.3 7.8 87 133-239 19-109 (131)
73 2la6_A RNA-binding protein FUS 99.7 1.8E-17 6.1E-22 138.4 9.6 91 133-236 9-99 (99)
74 2a3j_A U1 small nuclear ribonu 99.7 1.8E-17 6E-22 145.4 9.9 81 134-238 26-110 (127)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.9E-17 6.4E-22 151.6 10.4 84 135-239 70-153 (165)
76 2kt5_A RNA and export factor-b 99.7 5.9E-17 2E-21 141.0 13.1 86 133-240 31-116 (124)
77 2dis_A Unnamed protein product 99.7 2.7E-17 9.4E-22 139.6 10.5 84 136-240 7-94 (109)
78 1s79_A Lupus LA protein; RRM, 99.7 8.3E-18 2.8E-22 142.1 7.2 79 136-237 10-88 (103)
79 2jwn_A Embryonic polyadenylate 99.7 2.6E-17 9E-22 143.1 10.4 79 138-238 37-115 (124)
80 2dgw_A Probable RNA-binding pr 99.7 5.6E-17 1.9E-21 133.1 11.8 81 135-239 8-88 (91)
81 2kn4_A Immunoglobulin G-bindin 99.7 5E-17 1.7E-21 147.3 12.6 85 134-239 67-151 (158)
82 2nlw_A Eukaryotic translation 99.7 2E-17 6.7E-22 140.0 9.2 83 132-237 10-99 (105)
83 2cpx_A Hypothetical protein FL 99.7 1E-17 3.5E-22 143.6 7.6 86 134-240 22-107 (115)
84 2dgv_A HnRNP M, heterogeneous 99.7 2E-17 6.9E-22 135.9 9.0 82 135-239 6-87 (92)
85 2wbr_A GW182, gawky, LD47780P; 99.7 3.3E-17 1.1E-21 132.9 9.5 73 137-236 7-79 (89)
86 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4E-22 140.5 7.1 82 137-239 8-89 (104)
87 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.7E-17 1.6E-21 144.1 11.2 81 134-235 60-140 (140)
88 2cq1_A PTB-like protein L; RRM 99.7 7.9E-17 2.7E-21 135.5 12.0 83 133-242 11-95 (101)
89 2fc8_A NCL protein; structure 99.7 4.3E-17 1.5E-21 136.6 10.4 86 130-239 8-93 (102)
90 2mss_A Protein (musashi1); RNA 99.7 9.9E-18 3.4E-22 132.5 5.8 75 139-235 1-75 (75)
91 1x4e_A RNA binding motif, sing 99.7 3.6E-18 1.2E-22 138.4 3.3 81 135-236 3-83 (85)
92 2ki2_A SS-DNA binding protein 99.7 6.4E-18 2.2E-22 138.4 4.8 81 138-240 2-82 (90)
93 2cpy_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 140.5 9.6 82 134-238 12-94 (114)
94 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-17 5.3E-22 131.9 6.6 76 138-235 1-76 (77)
95 2lea_A Serine/arginine-rich sp 99.7 1.6E-17 5.6E-22 147.1 6.9 87 132-239 42-128 (135)
96 2dnq_A RNA-binding protein 4B; 99.7 7.1E-17 2.4E-21 132.3 10.2 77 135-240 6-82 (90)
97 1wez_A HnRNP H', FTP-3, hetero 99.7 3.5E-17 1.2E-21 137.9 8.5 82 134-239 12-93 (102)
98 3r27_A HnRNP L, heterogeneous 99.7 6.3E-17 2.2E-21 135.4 10.0 79 133-238 17-97 (100)
99 2fc9_A NCL protein; structure 99.7 8.8E-17 3E-21 134.6 10.9 82 134-240 12-93 (101)
100 2jvr_A Nucleolar protein 3; RN 99.7 6.3E-17 2.2E-21 138.5 10.0 77 137-238 28-105 (111)
101 2dgt_A RNA-binding protein 30; 99.7 2E-16 6.9E-21 130.2 12.2 78 134-240 7-84 (92)
102 1x4g_A Nucleolysin TIAR; struc 99.7 1.4E-16 4.7E-21 135.5 11.4 78 136-240 24-101 (109)
103 2ad9_A Polypyrimidine tract-bi 99.7 6.3E-17 2.2E-21 139.9 9.1 82 133-241 27-110 (119)
104 1x4d_A Matrin 3; structural ge 99.7 7.2E-17 2.5E-21 135.9 8.9 79 133-238 11-92 (102)
105 2xnq_A Nuclear polyadenylated 99.7 1.6E-16 5.4E-21 132.5 10.9 77 133-238 18-95 (97)
106 2cpd_A Apobec-1 stimulating pr 99.7 3.5E-16 1.2E-20 130.5 13.0 78 134-240 12-91 (99)
107 1why_A Hypothetical protein ri 99.7 9.4E-17 3.2E-21 133.5 9.4 79 134-239 14-94 (97)
108 3q2s_C Cleavage and polyadenyl 99.7 4.2E-17 1.4E-21 157.4 8.3 81 136-237 67-149 (229)
109 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.6E-21 132.0 9.4 78 135-240 6-85 (93)
110 2kvi_A Nuclear polyadenylated 99.7 5.2E-17 1.8E-21 134.9 7.6 78 135-241 8-86 (96)
111 1wel_A RNA-binding protein 12; 99.7 2.3E-17 7.9E-22 143.7 5.6 81 135-237 23-103 (124)
112 2db1_A Heterogeneous nuclear r 99.7 9.7E-17 3.3E-21 138.7 9.5 80 135-237 15-97 (118)
113 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4E-21 136.1 9.7 78 133-239 27-104 (108)
114 1iqt_A AUF1, heterogeneous nuc 99.7 3.7E-17 1.3E-21 129.1 5.9 75 139-235 1-75 (75)
115 1wex_A Hypothetical protein (r 99.7 1.5E-16 5.1E-21 134.6 9.3 80 134-240 12-93 (104)
116 1wf1_A RNA-binding protein RAL 99.7 3.9E-16 1.3E-20 132.9 11.7 74 136-238 26-100 (110)
117 2f3j_A RNA and export factor b 99.7 2E-16 6.8E-21 146.6 10.6 84 134-239 85-168 (177)
118 2ytc_A PRE-mRNA-splicing facto 99.7 3E-16 1E-20 126.9 10.3 76 134-236 9-85 (85)
119 1x5o_A RNA binding motif, sing 99.7 1.2E-16 4.2E-21 136.7 8.4 81 135-237 23-111 (114)
120 1nu4_A U1A RNA binding domain; 99.7 7.7E-17 2.6E-21 133.7 6.9 80 135-238 6-89 (97)
121 2e5j_A Methenyltetrahydrofolat 99.7 2.2E-16 7.4E-21 131.4 9.5 79 134-238 16-94 (97)
122 2krb_A Eukaryotic translation 99.7 4.3E-17 1.5E-21 131.0 5.1 72 138-232 2-80 (81)
123 2hvz_A Splicing factor, argini 99.7 2E-16 6.7E-21 132.5 9.2 76 138-239 1-76 (101)
124 3beg_B Splicing factor, argini 99.7 9.1E-17 3.1E-21 138.2 7.2 73 137-237 16-93 (115)
125 2la4_A Nuclear and cytoplasmic 99.7 1.8E-16 6.1E-21 132.7 8.8 75 136-237 26-100 (101)
126 2cpj_A Non-POU domain-containi 99.7 3.5E-16 1.2E-20 130.5 10.5 79 134-239 12-90 (99)
127 1fj7_A Nucleolin RBD1, protein 99.7 4.3E-17 1.5E-21 136.5 4.7 83 134-239 14-96 (101)
128 2e5g_A U6 snRNA-specific termi 99.7 3.6E-16 1.2E-20 129.2 10.2 77 136-239 7-83 (94)
129 3lqv_A PRE-mRNA branch site pr 99.7 2.5E-16 8.4E-21 135.0 9.5 79 135-237 6-84 (115)
130 2dnp_A RNA-binding protein 14; 99.7 5.8E-16 2E-20 126.8 11.3 75 135-238 7-81 (90)
131 1wg5_A Heterogeneous nuclear r 99.7 3.3E-16 1.1E-20 132.1 10.0 83 135-239 13-95 (104)
132 4f02_A Polyadenylate-binding p 99.7 2.8E-16 9.5E-21 149.5 10.6 83 134-237 12-94 (213)
133 2hgl_A HNRPF protein, heteroge 99.7 1.3E-16 4.5E-21 141.4 7.7 79 136-237 43-124 (136)
134 1fjc_A Nucleolin RBD2, protein 99.6 1.8E-16 6E-21 131.4 7.6 80 134-239 13-92 (96)
135 2dnn_A RNA-binding protein 12; 99.6 2.7E-16 9.2E-21 134.1 8.9 77 137-237 16-92 (109)
136 2hgn_A Heterogeneous nuclear r 99.6 4.8E-17 1.6E-21 144.8 4.3 80 136-239 45-124 (139)
137 1x5p_A Negative elongation fac 99.6 1.2E-15 4.1E-20 126.8 12.3 78 134-240 12-89 (97)
138 2lmi_A GRSF-1, G-rich sequence 99.6 1E-16 3.4E-21 136.0 5.9 81 134-237 8-91 (107)
139 2j8a_A Histone-lysine N-methyl 99.6 3.4E-16 1.1E-20 135.4 9.0 78 138-236 3-94 (136)
140 1x4f_A Matrin 3; structural ge 99.6 1.6E-16 5.4E-21 136.0 6.4 81 134-241 22-105 (112)
141 3egn_A RNA-binding protein 40; 99.6 9.4E-17 3.2E-21 143.2 5.1 87 134-238 42-130 (143)
142 2lcw_A RNA-binding protein FUS 99.4 1.9E-17 6.5E-22 142.4 0.0 92 136-240 6-97 (116)
143 2xs2_A Deleted in azoospermia- 99.6 3E-16 1E-20 131.5 7.3 79 136-238 8-86 (102)
144 1whx_A Hypothetical protein ri 99.6 4.8E-16 1.6E-20 132.9 8.5 76 137-239 10-85 (111)
145 2cq2_A Hypothetical protein LO 99.6 1.2E-15 4.1E-20 130.7 10.2 80 133-239 21-107 (114)
146 2i2y_A Fusion protein consists 99.6 7.7E-16 2.6E-20 138.4 9.2 79 134-238 70-148 (150)
147 2dha_A FLJ20171 protein; RRM d 99.6 4.8E-16 1.6E-20 135.4 7.0 77 137-236 23-103 (123)
148 3md3_A Nuclear and cytoplasmic 99.6 2.3E-15 7.9E-20 135.8 11.3 83 133-236 83-165 (166)
149 2e44_A Insulin-like growth fac 99.6 9.5E-16 3.3E-20 126.9 8.0 78 136-238 14-92 (96)
150 1fxl_A Paraneoplastic encephal 99.6 1.9E-15 6.6E-20 136.5 10.7 81 137-238 2-82 (167)
151 2qfj_A FBP-interacting repress 99.6 1.2E-15 4.3E-20 144.1 9.8 86 136-242 124-209 (216)
152 2hgm_A HNRPF protein, heteroge 99.6 8.9E-16 3E-20 134.2 7.6 78 136-237 41-120 (126)
153 1b7f_A Protein (SXL-lethal pro 99.6 1.7E-15 5.8E-20 137.3 9.7 82 136-238 2-83 (168)
154 2yh0_A Splicing factor U2AF 65 99.6 4.3E-15 1.5E-19 138.5 12.1 85 134-239 111-195 (198)
155 1wg1_A KIAA1579 protein, homol 99.6 1.7E-15 5.9E-20 123.6 7.9 76 136-239 4-79 (88)
156 2g4b_A Splicing factor U2AF 65 99.6 4.8E-15 1.6E-19 135.0 10.8 79 136-235 93-171 (172)
157 1l3k_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 138.7 9.9 83 136-240 103-185 (196)
158 2diu_A KIAA0430 protein; struc 99.6 3.5E-15 1.2E-19 122.2 8.0 73 136-239 7-85 (96)
159 3d2w_A TAR DNA-binding protein 99.6 5.1E-15 1.7E-19 121.4 8.6 73 136-238 10-84 (89)
160 2e5i_A Heterogeneous nuclear r 99.6 1.3E-14 4.4E-19 126.4 11.3 78 135-239 21-103 (124)
161 2cjk_A Nuclear polyadenylated 99.6 2.5E-15 8.5E-20 136.2 7.1 80 137-238 87-166 (167)
162 1wf0_A TDP-43, TAR DNA-binding 99.6 3.2E-15 1.1E-19 121.8 7.0 76 136-239 4-79 (88)
163 1l3k_A Heterogeneous nuclear r 99.6 6.7E-15 2.3E-19 136.9 10.0 82 135-238 11-92 (196)
164 1sjr_A Polypyrimidine tract-bi 99.6 6.6E-15 2.3E-19 133.8 9.6 77 138-239 47-125 (164)
165 2hzc_A Splicing factor U2AF 65 99.6 7.7E-15 2.6E-19 119.0 8.5 71 136-234 5-86 (87)
166 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-14 4.2E-19 127.3 10.2 76 138-239 29-107 (130)
167 2bz2_A Negative elongation fac 99.6 7.5E-15 2.6E-19 127.5 8.6 77 135-240 37-113 (121)
168 2pe8_A Splicing factor 45; RRM 99.6 1.5E-14 5.1E-19 122.4 10.3 83 134-237 5-93 (105)
169 4f02_A Polyadenylate-binding p 99.6 7.6E-15 2.6E-19 139.5 9.5 79 137-238 103-181 (213)
170 3tyt_A Heterogeneous nuclear r 99.5 9.5E-15 3.2E-19 138.5 9.6 79 135-239 2-81 (205)
171 2dnl_A Cytoplasmic polyadenyla 99.5 7E-15 2.4E-19 126.0 7.5 77 136-236 7-86 (114)
172 3md3_A Nuclear and cytoplasmic 99.5 1.6E-14 5.6E-19 130.2 10.0 80 138-239 1-80 (166)
173 1b7f_A Protein (SXL-lethal pro 99.5 1.3E-14 4.6E-19 131.3 9.1 81 134-235 86-168 (168)
174 2qfj_A FBP-interacting repress 99.5 1.2E-14 4E-19 137.4 8.5 80 137-237 28-107 (216)
175 1fxl_A Paraneoplastic encephal 99.5 1.9E-14 6.5E-19 129.9 8.6 81 134-235 85-167 (167)
176 3pgw_A U1-A; protein-RNA compl 99.5 1.1E-13 3.8E-18 136.6 13.6 78 133-236 203-281 (282)
177 2cjk_A Nuclear polyadenylated 99.5 2.5E-14 8.4E-19 129.6 8.1 79 136-237 2-80 (167)
178 1fje_B Nucleolin RBD12, protei 99.5 3.4E-14 1.2E-18 130.0 8.8 79 134-238 96-174 (175)
179 2adc_A Polypyrimidine tract-bi 99.5 3.5E-14 1.2E-18 136.5 8.7 85 128-238 25-110 (229)
180 2voo_A Lupus LA protein; RNA-b 99.5 4.9E-14 1.7E-18 132.3 9.3 77 138-237 110-186 (193)
181 3pgw_A U1-A; protein-RNA compl 99.5 8.3E-14 2.8E-18 137.6 11.0 81 134-238 6-90 (282)
182 3nmr_A Cugbp ELAV-like family 99.5 4.1E-14 1.4E-18 128.9 7.9 78 136-235 94-174 (175)
183 3u1l_A PRE-mRNA-splicing facto 99.5 2.6E-14 8.8E-19 138.1 6.8 80 135-241 132-232 (240)
184 3nmr_A Cugbp ELAV-like family 99.5 4E-14 1.4E-18 128.9 7.8 82 136-238 2-88 (175)
185 2ghp_A U4/U6 snRNA-associated 99.5 6.9E-14 2.4E-18 138.8 9.5 83 134-238 207-291 (292)
186 2dit_A HIV TAT specific factor 99.5 3.2E-13 1.1E-17 115.3 11.7 81 134-239 12-103 (112)
187 1fje_B Nucleolin RBD12, protei 99.4 7.4E-14 2.5E-18 127.7 5.7 83 133-238 9-91 (175)
188 3tyt_A Heterogeneous nuclear r 99.4 1.5E-13 5.3E-18 130.1 7.9 79 134-235 120-204 (205)
189 3smz_A Protein raver-1, ribonu 99.4 3.2E-13 1.1E-17 133.5 10.4 83 136-239 94-176 (284)
190 3v4m_A Splicing factor U2AF 65 99.4 3.5E-13 1.2E-17 113.9 8.8 82 134-236 2-95 (105)
191 3smz_A Protein raver-1, ribonu 99.4 3.4E-13 1.2E-17 133.3 10.1 84 134-239 181-265 (284)
192 1qm9_A Polypyrimidine tract-bi 99.4 1.9E-13 6.6E-18 127.7 6.6 77 137-239 3-80 (198)
193 3sde_A Paraspeckle component 1 99.4 5.2E-13 1.8E-17 130.9 9.4 76 135-237 20-95 (261)
194 1qm9_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 125.2 7.7 77 135-237 118-196 (198)
195 2yh0_A Splicing factor U2AF 65 99.4 1E-12 3.6E-17 122.2 9.8 86 136-238 3-88 (198)
196 2g4b_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 119.3 9.1 86 136-238 3-88 (172)
197 2adc_A Polypyrimidine tract-bi 99.4 9E-13 3.1E-17 126.6 8.8 77 135-237 149-227 (229)
198 1jmt_A Splicing factor U2AF 35 99.4 2.1E-13 7.3E-18 115.1 3.6 73 141-235 19-103 (104)
199 3ue2_A Poly(U)-binding-splicin 99.4 1E-12 3.4E-17 113.5 7.7 80 136-236 19-107 (118)
200 2ghp_A U4/U6 snRNA-associated 99.3 1.3E-12 4.4E-17 129.6 9.1 82 136-239 116-198 (292)
201 3sde_A Paraspeckle component 1 99.3 1.2E-12 4.1E-17 128.3 8.7 81 136-238 95-179 (261)
202 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.5E-11 5.2E-16 102.9 11.0 75 137-239 10-91 (100)
203 3tht_A Alkylated DNA repair pr 99.3 5.5E-12 1.9E-16 128.0 9.7 81 129-236 10-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 6.3E-11 2.1E-15 101.5 9.8 76 136-236 6-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 2.2E-10 7.5E-15 93.0 8.1 75 133-237 3-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.0 2.7E-10 9.3E-15 98.1 6.8 79 131-236 12-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 1.1E-09 3.7E-14 89.3 6.3 74 133-236 11-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.7 9.4E-09 3.2E-13 97.9 4.9 67 149-236 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.3 5.8E-06 2E-10 68.7 11.0 71 137-234 21-96 (117)
210 1wey_A Calcipressin 1; structu 97.6 0.00024 8E-09 58.8 8.0 74 137-237 5-83 (104)
211 1whv_A Poly(A)-specific ribonu 97.1 0.0015 5E-08 53.3 7.4 53 138-220 17-69 (100)
212 1uw4_A UPF3X; nonsense mediate 96.9 0.0058 2E-07 49.5 9.2 78 138-236 2-86 (91)
213 3ctr_A Poly(A)-specific ribonu 96.8 0.0015 5.3E-08 53.3 5.5 54 139-221 7-60 (101)
214 1wwh_A Nucleoporin 35, nucleop 96.5 0.011 3.9E-07 50.0 9.0 70 137-235 24-94 (119)
215 2dhx_A Poly (ADP-ribose) polym 96.5 0.0089 3.1E-07 49.2 7.9 70 137-236 8-82 (104)
216 2l08_A Regulator of nonsense t 95.6 0.015 5.2E-07 47.4 5.3 79 138-235 10-93 (97)
217 3p3d_A Nucleoporin 53; structu 95.1 0.032 1.1E-06 48.0 5.9 89 138-236 8-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 94.4 0.022 7.7E-07 59.5 3.8 54 138-218 54-107 (464)
219 2kn4_A Immunoglobulin G-bindin 94.0 0.022 7.4E-07 50.3 2.3 34 188-223 3-36 (158)
220 2i2y_A Fusion protein consists 93.9 0.017 5.6E-07 50.7 1.3 41 196-237 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 84.5 1.5 5.3E-05 46.3 7.0 54 138-221 441-494 (507)
222 2g0c_A ATP-dependent RNA helic 78.5 3 0.0001 31.7 5.0 73 139-236 2-75 (76)
223 4f25_A Polyadenylate-binding p 49.3 3.6 0.00012 33.8 0.0 18 136-153 96-113 (115)
224 4e8u_A Putative uncharacterize 41.6 25 0.00085 31.4 4.3 55 139-217 14-80 (172)
225 3fry_A Probable copper-exporti 27.7 1.1E+02 0.0036 21.9 5.3 57 138-223 7-63 (73)
226 3ts2_A Protein LIN-28 homolog 26.8 4.7 0.00016 35.2 -3.0 12 197-208 18-29 (148)
227 2v94_A RPS24, 30S ribosomal pr 20.6 1.2E+02 0.004 24.8 4.5 52 147-216 37-89 (107)
228 1xn9_A 30S ribosomal protein S 20.5 96 0.0033 25.0 4.0 52 147-216 28-80 (101)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=100.00 E-value=3.9e-39 Score=339.88 Aligned_cols=198 Identities=59% Similarity=1.046 Sum_probs=163.7
Q ss_pred CCCChhhhcccCCCCCCCCCCCCCC-----CCCCCCCChhHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 010771 40 TGLTANLLKLFEPRAPLEYKPPPEK-----RKCPPLTGMAQFVSHFAEPGDPLYAPPVEKAETPVERRARIHKLRLEKGA 114 (501)
Q Consensus 40 ~~~~~~~l~lf~p~pp~~~~pp~~~-----~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (501)
..|||+|+.||+|.||+++++|+.. ...++++++++|+..|..+... +++...++..+.....++++++..+
T Consensus 3 ~~lPp~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~---~~~~~~e~~~~~~~~~~~~k~~~~~ 79 (437)
T 3pgw_S 3 QFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDA---PPPTRAETREERMERKRREKIERRQ 79 (437)
T ss_pred CcCCccHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccc---cccccccCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999877653 2456788899998887654333 2223345556666555666666666
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecC
Q 010771 115 EKAAEELKKYDPHNDPNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDK 194 (501)
Q Consensus 115 ~~~~~~~~~~~p~~~~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~ 194 (501)
..+...+..+.|...+.....+.++|||+|||+.||+++|..+|++||.|+. |.|+.+.
T Consensus 80 ~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~---------------------v~i~~d~ 138 (437)
T 3pgw_S 80 QEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKR---------------------IHMVYSK 138 (437)
T ss_pred HHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE---------------------EEeeccC
Confidence 6777778888888888888888999999999999999999999999999999 8899998
Q ss_pred CCCCCCceEEEEEechhhHHHHHHhcCCceECCeEEEEEEecCCCCCCCCCCCCCCCCCccccCCCC
Q 010771 195 ETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 261 (501)
Q Consensus 195 ~t~~~~g~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~~~~~~~~~gg~~~~~~~g~~~ 261 (501)
.|+.++|||||+|.+.++|++||..|||+.|+|+.|.|+|+.+.....|.+...|||.+++..|+..
T Consensus 139 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~~~~~~ggG~gg~~~gg~~ 205 (437)
T 3pgw_S 139 RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGAD 205 (437)
T ss_pred CCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCCCCCCcCCCCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999888777776665554443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=156.03 Aligned_cols=81 Identities=25% Similarity=0.481 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+++|+++|+++|++||+|.. |.|+.++.+|.++|||||+|.+.++|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~---------------------v~i~~d~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVES---------------------AKLIRDKVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEECSSSCCEEEEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------eEeeecCCCCcccccEEEEECCHHHHHH
Confidence 3468999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
||..|||..|+|+.|.|.||++
T Consensus 77 Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 77 AINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHHHTTCEETTEECEEEECCB
T ss_pred HHHHhCCCEECCEEEEEEEeeC
Confidence 9999999999999999999964
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=153.24 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+++|++||.|.. |.|+.+..|+.++|||||+|.+.++|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~---------------------v~i~~d~~tg~~rG~aFV~f~~~~~A~ 62 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEE---------------------VEILLHPRTRKHLGLARVLFTSTRGAK 62 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEECCCCCceeeEEEEEECCHHHHH
Confidence 35679999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+||..|||..|+|+.|.|+++..
T Consensus 63 ~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 63 ETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp HHHHHHTTCEETTEECEEEECST
T ss_pred HHHHHhCCCEECCeEEEEEECCC
Confidence 99999999999999999999864
No 4
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=157.20 Aligned_cols=87 Identities=26% Similarity=0.515 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~ 96 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIES---------------------VKIVCDRETRQSRGYGFVKFQSGSS 96 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEE---------------------EEEEEETTTTEEEEEEEEEESSHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEEcCCCCCcceEEEEEECCHHH
Confidence 3456789999999999999999999999999999 8999998899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|.+||..|||..|.|+.|.|.++.....
T Consensus 97 a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 97 AQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp HHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999987544
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=148.27 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+++|||+|||+.+|+++|+++|++|| +|.. |.|+.++.|+.++|||||+|.+.++|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~---------------------v~i~~d~~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQARE---------------------VRLMRNKSSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSB---------------------CCSSSCSSSCCCSSEEEEECSSHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEE---------------------EEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 36899999999999999999999999 8998 8889999999999999999999999999
Q ss_pred HHHhc-CCceECCeEEEEEEecCCCC
Q 010771 216 AYKQA-DGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l-~g~~l~Gr~i~V~~a~~~~~ 240 (501)
||..| ++..|+|+.|.|+||.+++.
T Consensus 60 Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 60 WMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp HHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred HHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 99877 46679999999999986543
No 6
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=148.74 Aligned_cols=87 Identities=29% Similarity=0.583 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~ 71 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEE---------------------AVVITDRQTGKSRGYGFVTMADRAA 71 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEE---------------------EEESCCSSSCCCCSEEEEEESSHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE---------------------EEEEEcCCCCccceEEEEEECCHHH
Confidence 3456789999999999999999999999999999 8999998999999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~~ 241 (501)
|++||..|++ .|.|+.|.|.|+.....+
T Consensus 72 a~~Ai~~~~~-~~~g~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 72 AERACKDPNP-IIDGRKANVNLAYLGAKP 99 (116)
T ss_dssp HHHHHTCSSC-EETTEECEEEESTTTCCC
T ss_pred HHHHHHhCCC-cCCCEEEEEEEcccCCCc
Confidence 9999999998 899999999999765443
No 7
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=148.05 Aligned_cols=86 Identities=36% Similarity=0.592 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.+..++.++|||||+|.+.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGD---------------------VYIPREPHTKAPRGFAFVRFHDRRD 67 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EECCBCSSSCSBCSCEEEEESSSSH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEeCCCCCCCCeEEEEEECCHHH
Confidence 3456789999999999999999999999999999 8889998899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|++||..|||..|+|+.|.|.|+....
T Consensus 68 A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 68 AQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred HHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 999999999999999999999998644
No 8
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=147.17 Aligned_cols=88 Identities=26% Similarity=0.476 Sum_probs=81.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~A 67 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD---------------------IQIPLDYETEKHRGFAFVEFELAEDA 67 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCC---------------------EECCCCSSSCCCSSEEEECCSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEE---------------------EEEEecCCCCCcceEEEEEECCHHHH
Confidence 446789999999999999999999999999999 88889988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTVPN 242 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~~~ 242 (501)
++||..|||..|.|+.|.|.|+.+.....
T Consensus 68 ~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 68 AAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp HHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred HHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 99999999999999999999998765443
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=148.34 Aligned_cols=81 Identities=23% Similarity=0.468 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCC--cceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGP--IKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~--i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
...||||+|||+.+|+++|.++|++||. |.. |.|+.|+.|+.++|||||+|.+.++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~---------------------v~i~~d~~tg~srG~aFV~f~~~~~A 66 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNN---------------------IRLIKDKQTQQNRGFAFVQLSSAMDA 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGG---------------------EECCCCSSSSSCSSEEEEECSSSHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEE---------------------EEEEecCCCCCCceEeEEEECCHHHH
Confidence 4579999999999999999999999996 556 89999999999999999999999999
Q ss_pred HHHHHhcCCc----eECCeEEEEEEecC
Q 010771 214 KAAYKQADGR----KLDGRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~----~l~Gr~i~V~~a~~ 237 (501)
++||+.|||. .|+|+.|.|+||+.
T Consensus 67 ~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 67 SQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 9999999997 59999999999974
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.5e-19 Score=147.20 Aligned_cols=90 Identities=30% Similarity=0.453 Sum_probs=82.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 130 ~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
+.....+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~ 66 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISR---------------------IYLAKDKTTGQSKGFAFISFHR 66 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEE---------------------EEEEECSSSCSEEEEEEEEESS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE---------------------EEEeecCCCCceeeEEEEEECC
Confidence 3445567789999999999999999999999999999 8999998899999999999999
Q ss_pred hhhHHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 210 TRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
.++|++||..|||..|.|+.|.|.|+.+...
T Consensus 67 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 67 REDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp HHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred HHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 9999999999999999999999999986543
No 11
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=144.45 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceE-EEeecCCCCCCCceEEEEEechhhHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKV-RLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v-~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
+.++|||+|||+.+++++|..+|+.||.|.. | .|+.++.++.++|||||+|.+.++|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------~~~i~~~~~~g~~~g~afV~f~~~~~A~ 62 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ---------------------TPKIMRDPDTGNSKGYAFINFASFDASD 62 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSS---------------------CCEECCCTTTCSCCSEEEEEBSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEEEcCCCCCcCeEEEEEECCHHHHH
Confidence 5679999999999999999999999999998 7 89999889999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+||..|||..|.|+.|.|.|+.+...
T Consensus 63 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 63 AAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp HHHHTTTTCEETTEECEEEESCCCCC
T ss_pred HHHHHcCCCEECCEEEEEEEecccCC
Confidence 99999999999999999999986543
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=144.72 Aligned_cols=84 Identities=29% Similarity=0.512 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.++|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDN---------------------IVLMKDSDTGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EEEECCSSSCCCCSEEEEEESCHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE---------------------EEEeecCCCCceeeEEEEEECCHHHHHH
Confidence 5679999999999999999999999999999 8999998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
||..|||..|.|+.|.|.|+.....
T Consensus 63 A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 63 ALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp HHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred HHHHhCCCeeCCcEEEEEEcccccC
Confidence 9999999999999999999986543
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=145.25 Aligned_cols=86 Identities=22% Similarity=0.478 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a 65 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTE---------------------VVMIYDAEKQRPRGFGFITFEDEQSV 65 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEE---------------------EEECCCTTTCSCCSEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEeCCCCCCCCceEEEEECCHHHH
Confidence 346689999999999999999999999999999 89999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~~ 241 (501)
++||. |+|..|+|+.|.|.++.+....
T Consensus 66 ~~A~~-~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 66 DQAVN-MHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp HHHHH-HCCCBSSSCBCEEEECCCCCCC
T ss_pred HHHHH-hCCCEECCeEEEEEECCCCccc
Confidence 99997 9999999999999999875543
No 14
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=144.68 Aligned_cols=85 Identities=31% Similarity=0.581 Sum_probs=79.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~ 64 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE---------------------LHYPIDSLTKKPKGFAFVTFMFPEHAV 64 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEE---------------------EECCCCTTTCCCCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE---------------------EEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 45689999999999999999999999999999 888898889999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+||..|||..|.|+.|.|.++.....
T Consensus 65 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 65 KAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HHHHHTTTEESSSCEEEEEECCCCST
T ss_pred HHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 99999999999999999999987543
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=9.5e-19 Score=142.26 Aligned_cols=82 Identities=30% Similarity=0.526 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||..+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISD---------------------ARVVKDMATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeE---------------------EEEEecCCCCccceEEEEEECCHHHHHH
Confidence 4579999999999999999999999999999 8999998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
||..|||..|+|+.|.|.|+.++
T Consensus 64 A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 64 AIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp HHHHHTTCEETTEECEEEEEC--
T ss_pred HHHHcCCCEECCeEEEEEecCCC
Confidence 99999999999999999999764
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.6e-18 Score=148.85 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+++++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~ 79 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS---------------------AKVFIDKQTNLSKCFGFVSYDNPVS 79 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSE---------------------EEEEECSSSCSEEEEEEEECSSHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEECCCCCCcCccEEEEECCHHH
Confidence 3445689999999999999999999999999999 8999998899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|++||..|||..|.|+.|.|.|+.+...
T Consensus 80 a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 80 AQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp HHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred HHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 9999999999999999999999986543
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=145.84 Aligned_cols=88 Identities=24% Similarity=0.376 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech
Q 010771 131 NVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT 210 (501)
Q Consensus 131 ~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~ 210 (501)
.....+.++|||+|||+.+++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN---------------------THMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEE---------------------EECCBCSSSCSBCSCEEEEESSH
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCcCCcEEEEEECCH
Confidence 344556789999999999999999999999999999 88889888999999999999999
Q ss_pred hhHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 211 RDMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++|++||..|+|..|.|+.|.|.|+.+..
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 68 EDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp HHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred HHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 99999999999999999999999997654
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=5.8e-18 Score=145.28 Aligned_cols=86 Identities=30% Similarity=0.501 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a 70 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISD---------------------ARVVKDMATGKSKGYGFVSFFNKWDA 70 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEEcCCCCCcceEEEEEECCHHHH
Confidence 446789999999999999999999999999999 89999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|+|..|+|+.|.|.|+.....
T Consensus 71 ~~A~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 71 ENAIQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp HHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred HHHHHHhCCCEECCEEEEEEEccCCCC
Confidence 999999999999999999999986543
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2e-18 Score=143.45 Aligned_cols=83 Identities=23% Similarity=0.501 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
|.++|||+|||..+++++|.++|++||.|.. |.|+.+..++.++|||||+|.+.++|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVIN---------------------LKMMFDPQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EECCBCTTTCCBCSEEEEEESSHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEeCCCCCccceEEEEEECCHHHHHH
Confidence 4679999999999999999999999999999 8899998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||..|+|..|+|+.|.|.++.+..
T Consensus 60 Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 60 AVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp HHHHHTTCEETTEECEEEECSCSS
T ss_pred HHHHhCCCeECCeEEEEEEcCCCC
Confidence 999999999999999999998643
No 20
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=9e-19 Score=152.81 Aligned_cols=85 Identities=32% Similarity=0.450 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+|+++|+.+|++||.|.. |.|+.+..++.++|||||+|.+.++|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~ 78 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN---------------------IHLNLDRRTGYLKGYTLVEYETYKEAQ 78 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EECCBCTTTSSBCSCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCccceEEEEEECCHHHHH
Confidence 34679999999999999999999999999999 889999889999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+||..|||..|+|+.|.|.|+.+...
T Consensus 79 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 79 AAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp HHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred HHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 99999999999999999999986554
No 21
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.6e-18 Score=155.74 Aligned_cols=85 Identities=32% Similarity=0.475 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.||+++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~A 94 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKK---------------------IIMGLDKMKKTACGFCFVEYYSRADA 94 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCccceEEEEEECCHHHH
Confidence 345689999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++||..|||..|+|+.|.|+|+.+..
T Consensus 95 ~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 95 ENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp HHHHHHTTTSEETTEECEEEEESCCC
T ss_pred HHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999998644
No 22
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=147.93 Aligned_cols=83 Identities=36% Similarity=0.606 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+++++++|+++|++||.|.. |.|+.+. ++.++|||||+|.+.++|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~-~g~~~g~afV~F~~~~~A~ 62 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISE---------------------VLLIKDR-TSKSRGFAFITFENPADAK 62 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSE---------------------EEEECST-TTTCCCEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEECC-CCCcccEEEEEECCHHHHH
Confidence 45679999999999999999999999999999 8899987 8999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||..|||..|+|+.|.|.|+....
T Consensus 63 ~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 63 NAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred HHHHHhCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999998644
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=144.40 Aligned_cols=86 Identities=33% Similarity=0.608 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~A 67 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISE---------------------VVVVKDRETQRSRGFGFVTFENIDDA 67 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCE---------------------EEECCCSSSCSCCSEEEEECSSHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEeCCCCCCcccEEEEEECCHHHH
Confidence 345689999999999999999999999999999 88999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|||..|.|+.|.|.|+.....
T Consensus 68 ~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 68 KDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp HHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred HHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999999999986543
No 24
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=1.7e-18 Score=140.13 Aligned_cols=81 Identities=28% Similarity=0.515 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.++|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~ 63 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD---------------------IQIPLDYETEKHRGFAFVEFELAEDAA 63 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE---------------------EECCEETTTTEECSEEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEE---------------------EEEEECCCCCccccEEEEEECCHHHHH
Confidence 35689999999999999999999999999999 888888889999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEec
Q 010771 215 AAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
+||..|||..|+|+.|.|.|++
T Consensus 64 ~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 64 AAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp HHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHhCCCEECCcEEEEEEcC
Confidence 9999999999999999999984
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=141.47 Aligned_cols=83 Identities=24% Similarity=0.492 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~ 70 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK---------------------VTIMKDKDTRKSKGVAFILFLDKDS 70 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEE---------------------EEECCCSSSCCCTTCEEEEESCHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEeCCCCCCcccEEEEEECCHHH
Confidence 3456689999999999999999999999999999 8899998899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEec
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|++||..|||..|.|+.|.|.||+
T Consensus 71 A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 71 AQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp HHHHHHHTTTEEETTEEEEEEECC
T ss_pred HHHHHHHcCCCeeCCcEEEEEecC
Confidence 999999999999999999999984
No 26
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=3.2e-18 Score=144.07 Aligned_cols=85 Identities=33% Similarity=0.594 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|+.|| |.. |.|+.+..++.++|||||+|.+.++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~ 68 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS---------------------VRLVRDKDTDKFKGFCYVEFDEVDS 68 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEE---------------------EEEEECSSSCSEEEEEEEEESSHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE---------------------EEEeecCCCCccceEEEEEECCHHH
Confidence 345678999999999999999999999997 988 8999999999999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|++|| .|||..|.|+.|.|.++.+...
T Consensus 69 a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 69 LKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp HHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred HHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 99999 8999999999999999986543
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=143.95 Aligned_cols=85 Identities=28% Similarity=0.486 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCC---CCCCCceEEEEEechh
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKE---TNKPRGYAFIEYMHTR 211 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~---t~~~~g~aFVef~~~~ 211 (501)
.+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+.. |+.++|||||+|.+.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~gt~~~~g~afV~f~~~~ 61 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKS---------------------CTISKKKNKAGVLLSMGFGFVEYKKPE 61 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEEEECTTCCEEEEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCCCcCcccEEEEEECCHH
Confidence 35679999999999999999999999999998 88887766 6689999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+|++||..|||..|.|+.|.|.++.....
T Consensus 62 ~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 62 QAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp HHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred HHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 99999999999999999999999986554
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.1e-18 Score=138.89 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=76.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.+|||+|||+.+++++|.++|+.||.|.. |.|+.+..++.++|||||+|.+.++|++||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~---------------------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 60 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLS---------------------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 60 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEE---------------------EEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEEcCCCCCccceEEEEECCHHHHHHHH
Confidence 58999999999999999999999999999 889999889999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCC
Q 010771 218 KQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
..|||..|+|+.|.|.|+.+.
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 61 DSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp HHHTTCEETTEECEEEECCCC
T ss_pred HHhcCCeeCCcEEEEEecCcC
Confidence 999999999999999999764
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=141.95 Aligned_cols=85 Identities=38% Similarity=0.597 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 132 ~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
....+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~---------------------v~i~~~~~~~~~~g~afV~f~~~~ 68 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD---------------------VSIVYDQQSRRSRGFAFVYFENVD 68 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEE---------------------EEEEECSSSSSEEEEEEEEESSHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEEcCCCCCcccEEEEEECCHH
Confidence 34456789999999999999999999999999999 899999999999999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+|++||..|||..|+|+.|.|.|++.
T Consensus 69 ~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 69 DAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp HHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred HHHHHHHHhCCCEECCEEEEEEecCC
Confidence 99999999999999999999999864
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=145.37 Aligned_cols=86 Identities=30% Similarity=0.529 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~A 70 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKY---------------------VRVVLHPDTEHSKGCAFAQFMTQEAA 70 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EECCBCSSSCCBCSEEEEEESSHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCCCccEEEEEECCHHHH
Confidence 446789999999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHhcC------CceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQAD------GRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~------g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|+ |..|+|+.|.|.|+.+...
T Consensus 71 ~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 71 QKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp HHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred HHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 99999999 9999999999999986543
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=3.4e-18 Score=144.43 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~ 67 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE---------------------LTVLKDRFTGMHKGCAFLTYCERES 67 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCE---------------------EECCCCSSSCSCCSEEEEEESSHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEecCCCCCcceEEEEEECCHHH
Confidence 3456789999999999999999999999999999 8899998899999999999999999
Q ss_pred HHHHHHhcCCceE---CCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKL---DGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l---~Gr~i~V~~a~~~~ 239 (501)
|++||..|||..| .|+.|.|.++....
T Consensus 68 A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 68 ALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp HHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred HHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 9999999999998 89999999998644
No 32
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=3.8e-19 Score=146.12 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=72.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC--CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYG--PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
.+|||+|||+++|+++|+++|+.|| .|.. |.|+.++.+|.++|||||+|.+.++|++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~---------------------v~i~~~~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE---------------------IKFFENRANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCC---------------------EEEEECTTTCCEEEEEEECC-CHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE---------------------EEEEecCCCCccCcEEEEEECCHHHHHH
Confidence 3799999999999999999999999 8988 9999999999999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
||..|||..|+|+.|.|.++.+.+.
T Consensus 61 Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 61 LMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp HHHHGGGSCSSSCCCEECCC-----
T ss_pred HHHHcCCCeeCCEEEEEEECCCCcc
Confidence 9999999999999999999986544
No 33
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=145.64 Aligned_cols=93 Identities=25% Similarity=0.388 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+|+++|+++|+.||.|.+.. ....+.|.|+.++.++.++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~-------------~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A 78 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNK-------------RTGQPMIHIYLDKETGKPKGDATVSYEDPPTA 78 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCS-------------SSCCBSEECCBCTTTCSBCSEEEEEBSSHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEcc-------------ccCccCEEEEEeCCCCCeeeEEEEEECCHHHH
Confidence 44678999999999999999999999999998200 00000188899988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++||..|||..|.|+.|.|.++....
T Consensus 79 ~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 79 KAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHHHHHTTCEETTEECEEECSSCCC
T ss_pred HHHHHHcCCCccCCCEEEEEECCCCC
Confidence 99999999999999999999998654
No 34
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=144.11 Aligned_cols=87 Identities=22% Similarity=0.531 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeec-CCCCCCCceEEEEEechh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTD-KETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d-~~t~~~~g~aFVef~~~~ 211 (501)
...+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+ ..++.++|||||+|.+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~~g~afV~f~~~~ 69 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKT---------------------VRLPKKMTGTGAHRGFGFVDFITKQ 69 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EECCCCCSSSCSSCSEEEEEESSHH
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEE---------------------EEEecCCCCCCCcCceEEEEECCHH
Confidence 3456789999999999999999999999999999 888888 678999999999999999
Q ss_pred hHHHHHHhc-CCceECCeEEEEEEecCCCC
Q 010771 212 DMKAAYKQA-DGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 212 ~a~~Al~~l-~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+|++||..| ||..|.|+.|.|.|+.+...
T Consensus 70 ~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 70 DAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp HHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred HHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 999999999 99999999999999986543
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=140.64 Aligned_cols=87 Identities=20% Similarity=0.473 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+.. .++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~---------------------v~i~~~~~--~~~g~afV~f~~~~~a 68 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD---------------------VEIIFNER--GSKGFGFVTFENSADA 68 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEE---------------------EEEECCTT--TTCCEEEEEESCHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCC--CCcEEEEEEECCHHHH
Confidence 445689999999999999999999999999999 88887753 3899999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTVPNW 243 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~~~~ 243 (501)
++||..|+|..|+|+.|.|.++.+.....+
T Consensus 69 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 69 DRAREKLHGTVVEGRKIEVNNATARVMTNS 98 (103)
T ss_dssp HHHHHHHTTCEETTEECEEEECCSSCCCCC
T ss_pred HHHHHHhCCCEECCEEEEEEEcccCCCCCC
Confidence 999999999999999999999988766554
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=143.19 Aligned_cols=84 Identities=26% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC-CCCCceEEEEEechhh
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET-NKPRGYAFIEYMHTRD 212 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t-~~~~g~aFVef~~~~~ 212 (501)
..+.++|||+|||+.+++++|+++|+.|| |.. |.|+.+..+ +.++|||||+|.+.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~---------------------v~i~~~~~~~g~~~g~afV~f~~~~~ 69 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA---------------------VRLPREPSNPERLKGFGYAEFEDLDS 69 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEE---------------------EECCBCSSCTTSBCSCEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceE---------------------EEEecCCCCCCCcCeEEEEEECCHHH
Confidence 34668999999999999999999999999 998 888888887 9999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|++|| .|+|..|.|+.|.|.++.+...
T Consensus 70 a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 70 LLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp HHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred HHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 99999 9999999999999999986543
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=142.91 Aligned_cols=84 Identities=20% Similarity=0.389 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcc-eeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIK-RLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~-~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+.++|||+|||+.+++++|+++|++||.|. . |.|+.++.++.++|||||+|.+.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~ 64 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMS---------------------VKIIRNRLTGIPAGYCFVEFADLAT 64 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCE---------------------EEEEECSSSCCEEEEEEEECSCHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceE---------------------EEEeecCCCCCcCCEEEEEeCCHHH
Confidence 44678999999999999999999999999999 8 8999999999999999999999999
Q ss_pred HHHHHHhcCCceECCeE----EEEEEecCC
Q 010771 213 MKAAYKQADGRKLDGRR----VLVDVERGR 238 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~----i~V~~a~~~ 238 (501)
|++||..|||..|.|+. |+|.|+.+.
T Consensus 65 a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 65 AEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 99999999999999999 999999753
No 38
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=145.78 Aligned_cols=84 Identities=32% Similarity=0.463 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|..+|+.||.|.. |.|+.+..++.++|||||+|.+.++|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~ 79 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKN---------------------IHLNLDRRTGYLKGYTLVEYETYKEAQ 79 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTSSEEEEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEE---------------------EEEEecCCCCceeeEEEEEECCHHHHH
Confidence 35679999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||..|||..|+|+.|.|.|+.+.+
T Consensus 80 ~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 80 AAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHHHHHTTCBSSSSBCEEEESEESS
T ss_pred HHHHHhcCCEECCcEEEEEeecCCC
Confidence 9999999999999999999998654
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=143.46 Aligned_cols=85 Identities=14% Similarity=0.422 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+ ++.++|||||+|.+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~--~g~~~g~afV~f~~~~~ 67 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITS---------------------AKVMME--GGRSKGFGFVCFSSPEE 67 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEE---------------------EEEEEC--SSSEEEEEEEEESSHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEcC--CCCcCEEEEEEECCHHH
Confidence 3456789999999999999999999999999999 888887 78999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|++||..|||..|.|+.|.|.|+.+...
T Consensus 68 A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 68 ATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred HHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 9999999999999999999999986543
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=141.42 Aligned_cols=84 Identities=24% Similarity=0.470 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+. ++.++|||||+|.+.++|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~-~g~~~g~afV~f~~~~~a 71 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKD---------------------LRLVTNR-AGKPKGLAYVEYENESQA 71 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EEEEECT-TSCEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE---------------------EEEEECC-CCCEEeEEEEEECCHHHH
Confidence 345679999999999999999999999999999 8898887 899999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++||..|||..|+|+.|.|.|+.+..
T Consensus 72 ~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 72 SQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp HHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred HHHHHHhCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999997644
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=4.6e-18 Score=144.70 Aligned_cols=84 Identities=30% Similarity=0.440 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.+..++.++|||||+|.+.++|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~A~ 82 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN---------------------IHLNLDRRTGFSKGYALVEYETHKQAL 82 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EECCBCTTTSSBCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEecCCCCCcceEEEEEECCHHHHH
Confidence 45679999999999999999999999999999 888899889999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||..|+|..|+|+.|.|.|+.+..
T Consensus 83 ~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 83 AAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp HHHHHHTTCEETTEECEEEESEESS
T ss_pred HHHHHcCCCEECCcEEEEEEcccCC
Confidence 9999999999999999999997643
No 42
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=141.75 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+..++|||+|||+.+++++|+++|+.||.|.. +.|+.+..++.++|||||+|.+.++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~---------------------~~~~~~~~~g~~~g~afV~f~~~~~ 69 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPG---------------------SVCLKYNEKGMPTGEAMVAFESRDE 69 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTT---------------------TCEEEECSSSCEEEEEEEEESCHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccc---------------------eEEEEECCCCCeeeEEEEEECCHHH
Confidence 3445689999999999999999999999999988 7778888899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|++||..|||..|.|+.|.|+++...
T Consensus 70 a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 70 ATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp HHHHHHHTTTCEETTEECEEEESSCS
T ss_pred HHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 99999999999999999999998753
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=6.2e-18 Score=142.61 Aligned_cols=85 Identities=20% Similarity=0.386 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|..+|+.||.|.. |.|+.+. ++.++|||||+|.+.++|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~-~g~~~g~afV~f~~~~~A 69 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE---------------------CTVLRGP-DGSSKGCAFVKFSSHTEA 69 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EEEEECS-SSCEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEECC-CCCcCcEEEEEeCCHHHH
Confidence 456789999999999999999999999999999 8888887 799999999999999999
Q ss_pred HHHHHhcCCceECC---eEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDG---RRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~G---r~i~V~~a~~~~~ 240 (501)
++||..|||..|.| +.|.|.|+.....
T Consensus 70 ~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 70 QAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp HHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred HHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 99999999999998 9999999986543
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.3e-18 Score=145.30 Aligned_cols=82 Identities=21% Similarity=0.435 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------~~i~~~~~~g~~~g~afV~f~~~~~A 95 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVIS---------------------AKVFIDKQTSLSKCFGFVSFDNPDSA 95 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEE---------------------EEECCCSSSSCCCCEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEeCCCCCCcCcEEEEEECCHHHH
Confidence 345689999999999999999999999999999 89999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEec
Q 010771 214 KAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
++||..|||..|+|+.|+|+|++
T Consensus 96 ~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 96 QVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp HHHHHHCCCCEETTEECCEEEC-
T ss_pred HHHHHHcCCCEECCEEEEEEecC
Confidence 99999999999999999999974
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=8.6e-18 Score=136.75 Aligned_cols=80 Identities=23% Similarity=0.472 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~a 66 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD---------------------CTIKMDPNTGRSRGFGFILFKDAASV 66 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEE---------------------EEEEECTTTCCEEEEEEEEESSTHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEeecCCCCccccEEEEEECCHHHH
Confidence 446689999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEe
Q 010771 214 KAAYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a 235 (501)
++|| .++|..|+|+.|.|.+|
T Consensus 67 ~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 67 EKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HHHH-HSSCEEETTEEEEEEEC
T ss_pred HHHH-HhCCCEECCEEEEEEeC
Confidence 9999 46899999999999986
No 46
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=138.65 Aligned_cols=84 Identities=31% Similarity=0.511 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+.. ..+|||||+|.+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~--~~~g~afV~f~~~~~ 67 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKS---------------------CKMITEHT--SNDPYCFVEFYEHRD 67 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEE---------------------EEEECCCC--SSCCEEEEEESSHHH
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeE---------------------EEEEecCC--CCCCEEEEEECCHHH
Confidence 3456789999999999999999999999999999 88888753 368999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|++||..|+|..|.|+.|.|.|+.+..
T Consensus 68 a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 68 AAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred HHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 999999999999999999999998644
No 47
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=8.4e-18 Score=142.29 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+. ++.++|||||+|.+.++|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~-~g~~~g~afV~f~~~~~a 83 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKK---------------------AAVHYDR-SGRSLGTADVHFERKADA 83 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEECT-TSCEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEECC-CCCcceEEEEEECCHHHH
Confidence 346789999999999999999999999999998 8899998 899999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEec
Q 010771 214 KAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
++||..|||..|.|+.|.|.++.
T Consensus 84 ~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 84 LKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHhCCCEeCCcEEEEEEeC
Confidence 99999999999999999999985
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=9.1e-19 Score=146.95 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 136 PYKTLFVARLSY------ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 136 ~~~tlfVgnL~~------~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
..++|||+|||+ .+++++|.++|++||.|.. |.|+.+..|+.++|||||+|.+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~---------------------v~i~~d~~tg~~kG~afV~f~~ 63 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN---------------------MEFPIDEATGKTKGFLFVECGS 63 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE---------------------EECCEETTTTEECSEEEEEESS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE---------------------EEEEEcCCCCccceEEEEEECC
Confidence 357999999999 9999999999999999999 8999999999999999999999
Q ss_pred hhhHHHHHHhcCCceECC-eEEEEEEecC
Q 010771 210 TRDMKAAYKQADGRKLDG-RRVLVDVERG 237 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~G-r~i~V~~a~~ 237 (501)
.++|++||..|||..|.| +.|.|.++.+
T Consensus 64 ~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 64 MNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 999999999999999999 9999999864
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=144.96 Aligned_cols=84 Identities=31% Similarity=0.540 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|..+|+.||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~F~~~~~A 81 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIES---------------------IQLMMDSETGRSKGYGFITFSDSECA 81 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE---------------------EEEEEETTTTEEEEEEEEEESCHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEEcCCCCccceEEEEEECCHHHH
Confidence 445689999999999999999999999999999 89999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
++||..|+|..|+|+.|.|.++.++
T Consensus 82 ~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 82 KKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HHHHHHcCCCEECCEEEEEEEcccC
Confidence 9999999999999999999999764
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=141.67 Aligned_cols=86 Identities=26% Similarity=0.476 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|+.||+|.. |.|+.++.++.++|||||+|.+.++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~ 70 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVD---------------------CVIMKDKTTNQSRGFGFVKFKDPNC 70 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEECSSSCCEEEEEEEEESSTTH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeeCCCCCCcceEEEEEECCHHH
Confidence 3456789999999999999999999999999999 8999998899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|++||.. +|..|+|+.|.|.++.+...
T Consensus 71 a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 71 VGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp HHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred HHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 9999987 99999999999999986543
No 51
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=9.3e-18 Score=143.07 Aligned_cols=85 Identities=24% Similarity=0.473 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|..+|+.||.|.. |.|+.+..++.++|||||+|.+.++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~---------------------v~i~~~~~tg~~kg~afV~f~~~~~ 79 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKE---------------------CLVMRDPLTKRSRGFGFVTFMDQAG 79 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EEECCCTTTCCCTTCEEEEESSHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEE---------------------EEEEECCCCCCcCcEEEEEECCHHH
Confidence 3445689999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|++||..+ |..|+|+.|.|.++.++.
T Consensus 80 A~~Ai~~~-~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 80 VDKVLAQS-RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp HHHHHHSS-CEEETTEEEEEEECCCCC
T ss_pred HHHHHHHC-CCcCCCEEEEEEEccCCC
Confidence 99999865 699999999999997643
No 52
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=138.31 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 136 PYKTLFVARLSYETTESKIK----REFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
..++|||+|||+.+++++|+ ++|++||.|.. |.|+.+..+ +|||||+|.+.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~---------------------v~i~~~~~~---rg~afV~f~~~~ 63 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS---------------------VELSPHTDY---QLKAVVQMENLQ 63 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE---------------------EEECSCCST---TCCEEEEESSHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE---------------------EEEEeCCCC---CeEEEEEECCHH
Confidence 45799999999999999999 99999999999 888888765 889999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+|++||..|||..|+|+.|+|.++.+.+.
T Consensus 64 ~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 64 DAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred HHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 99999999999999999999999986553
No 53
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=6.2e-18 Score=145.52 Aligned_cols=80 Identities=23% Similarity=0.478 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|||+|||+.+++++|+++|++||.|.. |.|+.+. +.++|||||+|.+.++|++|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~---------------------v~i~~d~--~~~kg~afV~f~~~~~A~~A 61 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILS---------------------CKVVCDE--NGSKGYGFVHFETQEAAERA 61 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEEET--TEEEEEEEEEESCHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEE---------------------EEEeecC--CCCCceEEEEECCHHHHHHH
Confidence 458999999999999999999999999999 8888875 45789999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|..|+|..|+|+.|.|.++....
T Consensus 62 i~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 62 IEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp HHHHTTCEETTEECEEEESSCCC
T ss_pred HHHcCCCEECCEEEEEEECCCcc
Confidence 99999999999999999987543
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.3e-17 Score=136.03 Aligned_cols=78 Identities=24% Similarity=0.586 Sum_probs=75.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|||+|||+.+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|++||
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNR---------------------VTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEE---------------------EEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 69999999999999999999999999999 899999889999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecC
Q 010771 218 KQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~ 237 (501)
.|||..|.|+.|.|.++++
T Consensus 66 -~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 66 -ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp -GGTTCEETTEECEEEETTT
T ss_pred -hcCCCEECCcEEEEEEccC
Confidence 9999999999999999875
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=140.37 Aligned_cols=83 Identities=27% Similarity=0.395 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|..||.|.. |.|+.+. ++.++|||||+|.+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~---------------------~~i~~~~-~g~~~g~afV~f~~~~~ 68 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVR---------------------ADILEDK-DGKSRGIGTVTFEQSIE 68 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EEEEECT-TCSEEEEEEEEESSHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEECC-CCCeeeEEEEEECCHHH
Confidence 3456789999999999999999999999999999 8888886 58899999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|++||..|||..|+|+.|.|.++..
T Consensus 69 a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 69 AVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHHhCCCEeCCCEEEEEEccc
Confidence 9999999999999999999999874
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=9.1e-18 Score=136.60 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCC-CCceEEEEEechhhHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNK-PRGYAFIEYMHTRDMK 214 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~-~~g~aFVef~~~~~a~ 214 (501)
..++|||+|||+.+++++|.++|++||.|.. |.|+.+..++. ++|||||+|.+.++|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------~~i~~~~~~~~~~~g~afV~f~~~~~a~ 61 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM---------------------IDMPVERMHPHLSKGYAYVEFENPDEAE 61 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEE---------------------EECCEETTEEEEECSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEEeCCCCCCCCCcEEEEEEecHHHHH
Confidence 3579999999999999999999999999999 88888877666 8999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+||..|||..|+|+.|.|.++.+
T Consensus 62 ~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 62 KALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp HHHHHHTTCEETTEECEEEEECC
T ss_pred HHHHHcCCCeECCeEEEEEECCC
Confidence 99999999999999999999965
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=139.52 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+|+++|+++|++||.|.. |.|+. ++.++|||||+|.+.++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~---------------------~~i~~---~~~~~g~afV~f~~~~~ 73 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD---------------------IDLKN---RRGGPPFAFVEFEDPRD 73 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEECC---SSSSSCCEEEEESCHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEE---CCCCCcEEEEEECCHHH
Confidence 3446689999999999999999999999999998 76654 45689999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|++||..|||..|.|+.|.|.|+.+..
T Consensus 74 A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 74 AEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp HHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred HHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 999999999999999999999997644
No 58
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-17 Score=138.62 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+++|+++|+++|++||.|.. |.|+.+ |||||+|.+.++|++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------~~i~~~-------g~afV~f~~~~~a~~ 65 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY---------------------ADVYRD-------GTGVVEFVRKEDMTY 65 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEE---------------------EEEETT-------TEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE---------------------EEEecC-------CEEEEEECCHHHHHH
Confidence 4679999999999999999999999999999 777764 899999999999999
Q ss_pred HHHhcCCceECC-----eEEEEEEecCCC
Q 010771 216 AYKQADGRKLDG-----RRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~G-----r~i~V~~a~~~~ 239 (501)
||..|||..|.| +.|.|+++.++.
T Consensus 66 Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 66 AVRKLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp HHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence 999999999999 999999997643
No 59
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-18 Score=145.02 Aligned_cols=80 Identities=20% Similarity=0.491 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+.+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A 83 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRD---------------------VRIISDRNSRRSKGIAYVEFCEIQSVPLA 83 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EEECCSCCSSSCCCCEEEEESCGGGHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeE---------------------EEEEecCCCCccCcEEEEEeCcHHHHHHH
Confidence 469999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
| .|||..|+|+.|.|.|+.+.
T Consensus 84 ~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 84 I-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp H-HHTTEEETTEEEEEEEHHHH
T ss_pred H-HcCCCEeCCeEEEEEecCCC
Confidence 9 99999999999999998753
No 60
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=143.91 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH---HHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCC---CCCceEEE
Q 010771 132 VSGDPYKTLFVARLSYETTESKIK---REFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETN---KPRGYAFI 205 (501)
Q Consensus 132 ~~~~~~~tlfVgnL~~~~te~~l~---~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~---~~~g~aFV 205 (501)
....+.++|||+|||+.+++++|. ++|++||+|.. |.|+.+..++ .++|||||
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~---------------------v~i~~~~~~~~~~~~~G~afV 68 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK---------------------VVINNSTSYAGSQGPSASAYV 68 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE---------------------EEEECCSSCCSSSCCCEEEEE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE---------------------EEEecCCCcCccCCCCeEEEE
Confidence 334456799999999999999999 99999999999 8888877644 55699999
Q ss_pred EEechhhHHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 206 EYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 206 ef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+|.+.++|++||..|||..|+|+.|.|.|+.+.+.
T Consensus 69 ~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 69 TYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred EECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 99999999999999999999999999999987653
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=5.4e-18 Score=149.09 Aligned_cols=86 Identities=38% Similarity=0.619 Sum_probs=80.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 132 ~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
....+.++|||+|||+.+++++|+++|++||+|.. |.|+.++.++.++|||||+|.+.+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~---------------------v~i~~d~~tg~~~G~afV~F~~~~ 99 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIAD---------------------VSIVYDQQSRRSRGFAFVYFENVD 99 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEE---------------------EEEECCSSSSCCCCEEEEEESCHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCccceEEEEEECCHH
Confidence 34556789999999999999999999999999999 999999999999999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+|++||..|||..|+|+.|.|.|+...
T Consensus 100 ~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 100 DAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred HHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 999999999999999999999999764
No 62
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=3.9e-17 Score=137.44 Aligned_cols=77 Identities=25% Similarity=0.504 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+|+++|+++|++||.|.. |.|+ ++||||+|.+.++|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~---------------------v~~~--------~~~afV~f~~~~~a~ 59 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLER---------------------VKKL--------KDYAFIHFDERDGAV 59 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEE---------------------EEEC--------SSCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEE--------CCEEEEEeCCHHHHH
Confidence 45689999999999999999999999999998 7664 569999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+||..|||..|.|+.|.|.|+.+...
T Consensus 60 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 60 KAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 99999999999999999999986544
No 63
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=141.23 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFES-YGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~-~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+.++|||+|||+.+|+++|+++|+. ||.|.. |.|+.+. ++.++|||||+|.+.++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~---------------------v~i~~~~-~g~~~g~afV~f~~~~~a 64 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG---------------------GKVVLDQ-TGVSKGYGFVKFTDELEQ 64 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE---------------------EEEEECT-TCCEEEEEEEEESCHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE---------------------EEEEECC-CCCccceEEEEECCHHHH
Confidence 45679999999999999999999999 999999 8999998 899999999999999999
Q ss_pred HHHHHhcCCce-ECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRK-LDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~-l~Gr~i~V~~a~~~~ 239 (501)
++||..|+|.. |+|+.|.|.++....
T Consensus 65 ~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 65 KRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp HHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred HHHHHHccCCcccCCEeEEEEEccCCC
Confidence 99999999999 999999999997644
No 64
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=152.00 Aligned_cols=80 Identities=18% Similarity=0.353 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC--CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYG--PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.++|||+|||+++|+++|+++|+.|| .|.. |.|+.|+.+|.++|||||+|.+.++|+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~---------------------v~i~~d~~tg~skGfaFV~f~~~~~A~ 113 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVE---------------------LKFAENRANGQSKGYAEVVVASENSVH 113 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEE---------------------EEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEE---------------------EEEEecCCCCccceEEEEEECCHHHHH
Confidence 46999999999999999999999999 8888 999999999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+||..|||..|+|+.|.|.++..
T Consensus 114 ~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 114 KLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHHHHSTTCEETTEECEEEECCH
T ss_pred HHHHHcCCCEECCeEeEEEEcCC
Confidence 99999999999999999999864
No 65
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=137.31 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.++.++.++|||||+|.+.++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~ 69 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM---------------------VQVKKDLKTGHSKGFGFVRFTEYET 69 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEE---------------------EEEEECSSSCSEEEEEEEEESSHHH
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCCccceEEEEECCHHH
Confidence 3456689999999999999999999999999999 9999998899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|++||. ++..|+|+.|.|.|+.....
T Consensus 70 a~~A~~--~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 70 QVKVMS--QRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp HHHHHH--SCEEETTEEEEEECCCTTCC
T ss_pred HHHHHH--cCCeeCCeEEEEEecCCCCc
Confidence 999997 57899999999999987544
No 66
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=138.25 Aligned_cols=82 Identities=26% Similarity=0.471 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|++||+|.. |.|+.+.. +.++|||||+|.+.++|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~---------------------v~i~~~~~-g~~~g~afV~f~~~~~a 70 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTK---------------------VTICKDRE-GKPKSFGFVCFKHPESV 70 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTT-SCEEEEEEEEESSTHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEECCC-CCCceEEEEEECCHHHH
Confidence 345689999999999999999999999999999 88888875 88999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
++||..|||..|.|+.|.|.|++.
T Consensus 71 ~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 71 SYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp HHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHhCCCEECCCEEEEEEcCC
Confidence 999999999999999999999863
No 67
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.1e-18 Score=144.35 Aligned_cols=82 Identities=26% Similarity=0.541 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+++++++|+.+|+.||.|.. |.|+.++.++.++|||||+|.+.++|++|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~A 85 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTD---------------------CVVMRDPASKRSRGFGFVTFSSMAEVDAA 85 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSE---------------------EEEECCTTTSSCCSEEEEECSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEECCCCCCcCceEEEEeCCHHHHHHH
Confidence 479999999999999999999999999999 89999999999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|.. +|..|+|+.|.|.++.++..
T Consensus 86 i~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 86 MAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp HTS-CSEEETTEEEEEECCSSCCC
T ss_pred HHh-CCcEECCEEEEEEECCCCcc
Confidence 976 99999999999999986543
No 68
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=141.12 Aligned_cols=87 Identities=18% Similarity=0.458 Sum_probs=77.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 130 ~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
+.....+.++|||+|||..+++++|+++|++||.|.. |.|+.+. +.++|||||+|.+
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------------v~i~~~~--~~~kg~afV~f~~ 78 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD---------------------VEIIFNE--RGSKGFGFVTFEN 78 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSC---------------------EEECCBT--TBCTTEEEEECCC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEE---------------------EEEEECC--CCCceEEEEEECC
Confidence 3344556789999999999999999999999999999 8888775 4589999999999
Q ss_pred hhhHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 210 TRDMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
.++|++||..|+|..|+|+.|.|.++.++.
T Consensus 79 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 79 SADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp SHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 999999999999999999999999997653
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=140.95 Aligned_cols=80 Identities=14% Similarity=0.275 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+|+++|+++|++||.|.. |.|+.+ +|||||+|.+.++|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~---------------------v~i~~~------kGfaFVeF~~~~~A~ 66 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN---------------------LLMLKG------KNQAFIEMNTEEAAN 66 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEE---------------------EEEETT------TTEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEcC------CCEEEEEECCHHHHH
Confidence 45679999999999999999999999999999 777653 699999999999999
Q ss_pred HHHHhcC--CceECCeEEEEEEecCCCCC
Q 010771 215 AAYKQAD--GRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 215 ~Al~~l~--g~~l~Gr~i~V~~a~~~~~~ 241 (501)
+||..|+ |..|.|+.|.|.|+......
T Consensus 67 ~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 67 TMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp HHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred HHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 9999886 47899999999999876543
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=143.85 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecC-CCCCCCceEEEEEech
Q 010771 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDK-ETNKPRGYAFIEYMHT 210 (501)
Q Consensus 132 ~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~-~t~~~~g~aFVef~~~ 210 (501)
......++|||+|||+.+++++|+++|+.|| |.. |.|+.+. .++.++|||||+|.+.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~---------------------v~i~~~~~~~g~~~g~afV~f~~~ 71 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISA---------------------VRLPREPSNPERLKGFGYAEFEDL 71 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEE---------------------EECSCCTTTTCCCCSCEEEEECCH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeE---------------------EEEEecCCcCCccCeEEEEEECCH
Confidence 3445678999999999999999999999999 998 8888887 6899999999999999
Q ss_pred hhHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 211 RDMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
++|.+|| .|+|..|+|+.|.|.++.+.
T Consensus 72 ~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 72 DSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp HHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred HHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 9999999 89999999999999999754
No 71
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=7e-18 Score=139.53 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+++++|+++|++||.|.. +.|+.+..++.++|||||+|.+.++|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------~~~~~~~~~g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPG---------------------SVCLKYNEKGMPTGEAMVAFESRDEATA 72 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTT---------------------CCEEEECTTSCEEEEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccc---------------------eEEEEeCCCCCEeeEEEEEECCHHHHHH
Confidence 4579999999999999999999999999998 7788888899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEec
Q 010771 216 AYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
||..|||..|.|+.|.|+++.
T Consensus 73 Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 73 AVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHTTCEETTEECEEECCC
T ss_pred HHHHhCCCeECCcEEEEEecc
Confidence 999999999999999999875
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=7.6e-18 Score=148.30 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+|+++|+++|++||.|..+. |.|+.++.|+.++|||||+|.+. +
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~-------------------v~i~~d~~tg~~rG~aFV~f~~~-~ 78 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN-------------------VRVIKDKQTQLNRGFAFIQLSTI-E 78 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT-------------------EECCBCSSSSSBCSCEEEECCHH-H
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee-------------------EEEEEcCCCCCcceEEEEEECCH-H
Confidence 345678999999999999999999999999995411 78889999999999999999999 9
Q ss_pred HHHHHHhcCCc----eECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGR----KLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~----~l~Gr~i~V~~a~~~~ 239 (501)
|.+||..|||. .|+|+.|.|.++.+..
T Consensus 79 a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 79 AAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp HHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred HHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 99999999999 9999999999997643
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=138.42 Aligned_cols=91 Identities=27% Similarity=0.336 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|++||.|....+ .....|.|+.++.++.++|||||+|.+.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~-------------~~~~~v~i~~~~~~g~~~G~afV~f~~~~~ 75 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKK-------------TGQPMINLYTDRETGKLKGEATVSFDDPPS 75 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETT-------------TTEESEEEEECTTTCSEEEEEEEEBSSHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccc-------------cccccEEEEecCCCCCeeeEEEEEECCHHH
Confidence 3456789999999999999999999999999986110 001116678888899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEec
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|++||..|||..|.|+.|.|.+|+
T Consensus 76 a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 76 AKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHhCCCEeCCcEEEEEecC
Confidence 999999999999999999999974
No 74
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=145.39 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 134 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
..+.++|||+|||+.+++++|+ .+|++||.|.. |.|. .++.++|||||+|.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~---------------------v~i~---~~~~~rG~aFV~F~~ 81 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILD---------------------IVVD---LSDDNSGKAYIVFAT 81 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE---------------------EEEC---CCCSSCCCEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE---------------------EEec---cCCCcCCEEEEEECC
Confidence 4567899999999999999876 79999999988 6554 368899999999999
Q ss_pred hhhHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 210 TRDMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.++|..||..|||..|.|+.|.|.|+...
T Consensus 82 ~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 82 QESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 99999999999999999999999999754
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=1.9e-17 Score=151.62 Aligned_cols=84 Identities=30% Similarity=0.440 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+.+|++||.|.. |.|+.++.++.++|||||+|.+.++|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~A~ 128 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKN---------------------IHLNLDRRTGFSKGYALVEYETHKQAL 128 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTSSEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE---------------------EEEEecCCCCcEeeEEEEEECCHHHHH
Confidence 45678999999999999999999999999999 999999899999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||..|||..|.|+.|.|.|+....
T Consensus 129 ~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 129 AAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHHHHTTCEETTEECEEEESEECC
T ss_pred HHHHHhCCCEECCEEEEEEEecCCC
Confidence 9999999999999999999997644
No 76
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=5.9e-17 Score=141.00 Aligned_cols=86 Identities=22% Similarity=0.380 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+. ++.++|||||+|.+.++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~---------------------v~i~~~~-~g~~~g~afV~f~~~~~ 88 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKK---------------------AAVDYDR-SGRSLGTADVHFERRAD 88 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSE---------------------EEEECCS-SSSCCSEEEEEESSHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEECC-CCCEeeEEEEEECCHHH
Confidence 3456689999999999999999999999999999 8899988 89999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
|++||..|||..|+|+.|.|.||.....
T Consensus 89 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 89 ALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999999999999986543
No 77
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=139.56 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCC-cceeeecCCCCCCCCCCCCCCCceEEEe-ecCCCCCCCceEEEEEechhhH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGP-IKRLICNSCNGGDSSRDGKPCDEKVRLV-TDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~-i~~~~~~~~~~~~~~~~~~~~~~~v~l~-~d~~t~~~~g~aFVef~~~~~a 213 (501)
+.++|||+|||+.+++++|.++|..||. |.. |.|+ .+..++.++|||||+|.+.++|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~---------------------v~i~~~~~~~g~~~g~afV~f~~~~~A 65 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLD---------------------VIVYASAADKMKNRGFAFVEYESHRAA 65 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE---------------------EECCSSSCTTTTTCCEEEEEESSHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE---------------------EEEEccCCCCCCcCcEEEEEecCHHHH
Confidence 4679999999999999999999999998 998 7777 7888899999999999999999
Q ss_pred HHHHHhcC--CceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQAD--GRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~--g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|+ +..|.|+.|.|.|+.+...
T Consensus 66 ~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 66 AMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp HHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred HHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 99999996 5899999999999987554
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.3e-18 Score=142.06 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+.+|+++|.++|++||+|.. |.|+.+.. +.++|||||+|.+.++|++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~---------------------v~i~~d~~-g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN---------------------IQMRRTLH-KAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEE---------------------EEEECCCT-TSCCCEEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEE---------------------EEEEECCC-CCCccEEEEEECCHHHHHH
Confidence 4579999999999999999999999999999 89999877 9999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
||. |+|..|+|+.|.|.|+..
T Consensus 68 Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 68 FVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp HHT-SSCCCCTTTTCEEEEHHH
T ss_pred HHH-cCCCEECCEEEEEEEchH
Confidence 997 999999999999998753
No 79
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.6e-17 Score=143.07 Aligned_cols=79 Identities=29% Similarity=0.594 Sum_probs=75.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|||+|||+.+|+++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINR---------------------ITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEE---------------------EEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 59999999999999999999999999999 889999889999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCC
Q 010771 218 KQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.|+|..|+|+.|.|.|+...
T Consensus 96 -~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 96 -AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp -TTTTCEETTEECEEEESSCC
T ss_pred -hcCCCeECCeEEEEEECCCC
Confidence 89999999999999999753
No 80
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=133.14 Aligned_cols=81 Identities=19% Similarity=0.350 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
...++|||+|||+.+++++|+++|+.| .|.. |.|+.+ .++.++|||||+|.+.++|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~---------------------v~i~~~-~~g~~~g~afV~f~~~~~a~ 64 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA---------------------IRIVRN-AHGNKTGYIFVDFSNEEEVK 64 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSE---------------------EEEEEC-TTSCEEEEEEEECSSHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceE---------------------EEEEEC-CCCCCceEEEEEECCHHHHH
Confidence 346799999999999999999999999 8988 889888 78999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||. |||..|+|+.|.|.++...+
T Consensus 65 ~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 65 QALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp HHHH-SCSEEETTEEEEEEEESSCC
T ss_pred HHHH-hCCceeCCcEEEEEECCcCC
Confidence 9998 99999999999999998653
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=5e-17 Score=147.26 Aligned_cols=85 Identities=33% Similarity=0.576 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~---------------------~~i~~~~~~g~~~g~afV~f~~~~~a 125 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD---------------------VYIPRDRYTKESRGFAFVRFHDKRDA 125 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEE---------------------EECCCCSSCTTSCCEEEEEESBHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeecCCCCccceEEEEEECCHHHH
Confidence 345689999999999999999999999999999 88999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++||..|||..|+|+.|.|.|+.+..
T Consensus 126 ~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 126 EDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999998643
No 82
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=139.98 Aligned_cols=83 Identities=25% Similarity=0.360 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEcCCCCCC------CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEE
Q 010771 132 VSGDPYKTLFVARLSYET------TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFI 205 (501)
Q Consensus 132 ~~~~~~~tlfVgnL~~~~------te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFV 205 (501)
......++|||+|||+.+ |+++|..+|++||.|.. |.|+ ..+|.++|||||
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~---------------------v~i~--~~~g~~~G~afV 66 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN---------------------DFYP--EEDGKTKGYIFL 66 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE---------------------EECC--CBTTBSCCEEEE
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE---------------------EEee--CCCCCeeeEEEE
Confidence 344456899999999999 78999999999999999 7666 467899999999
Q ss_pred EEechhhHHHHHHhcCCceECCe-EEEEEEecC
Q 010771 206 EYMHTRDMKAAYKQADGRKLDGR-RVLVDVERG 237 (501)
Q Consensus 206 ef~~~~~a~~Al~~l~g~~l~Gr-~i~V~~a~~ 237 (501)
+|.+.++|.+||..|||..|+|+ .|.|.++..
T Consensus 67 ~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 67 EYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp EECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred EECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 99999999999999999999998 999999864
No 83
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-17 Score=143.64 Aligned_cols=86 Identities=26% Similarity=0.416 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+|+++|.++|+.||.|..+.+. +.++ ++.++|||||+|.+.++|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~-----------------~~~~----~g~~~g~afV~f~~~~~a 80 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQ-----------------FRMM----TGRMRGQAFITFPNKEIA 80 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCE-----------------EEEE----CSSSCSEEEEECSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEE-----------------EEcC----CCccceEEEEEECCHHHH
Confidence 4467899999999999999999999999999663211 4443 788999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|+|..|.|+.|.|.|+.....
T Consensus 81 ~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 81 WQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp HHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred HHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 999999999999999999999986543
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=2e-17 Score=135.89 Aligned_cols=82 Identities=21% Similarity=0.399 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+.+|++||.|.. |.|+.+ ++.++|||||+|.+.++|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~---------------------~~i~~~--~g~~~g~afV~f~~~~~a~ 62 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLY---------------------ADIKME--NGKSKGCGVVKFESPEVAE 62 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEES--SSCEEEEEEEEESSHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEcc--CCCcceEEEEEECCHHHHH
Confidence 35679999999999999999999999999999 777763 7889999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||..|+|..|+|+.|.|.++.+..
T Consensus 63 ~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 63 RACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred HHHHHhCCCEECCcEEEEEEcCCCC
Confidence 9999999999999999999998644
No 85
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=3.3e-17 Score=132.93 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
...|||+||++.+|+++|+++|.+||+|.+ +.|+. ++|||||+|.+.++|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~---------------------~~l~~------~kGfaFVey~~~~eA~~A 59 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVS---------------------FHPYL------NQGIALCKYTTREEANKA 59 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEE---------------------EEEET------TTTEEEEEESSHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEE---------------------EEEcC------CCcEEEEEECCHHHHHHH
Confidence 468999999999999999999999999999 77753 789999999999999999
Q ss_pred HHhcCCceECCeEEEEEEec
Q 010771 217 YKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~ 236 (501)
|+.|||..|.|+.|.|++|.
T Consensus 60 i~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 60 QMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHHTTEEETTEEEEEECCC
T ss_pred HHHhcCCEECCcEEEEEECC
Confidence 99999999999999999984
No 86
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=140.52 Aligned_cols=82 Identities=37% Similarity=0.695 Sum_probs=77.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+.+++++|+.+|+.||.|.. |.|+.+..++.++|||||+|.+.++|++|
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~---------------------~~i~~~~~~g~~~g~afV~f~~~~~a~~A 66 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVS---------------------FRLVYDRETGKPKGYGFCEYQDQETALSA 66 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSE---------------------EEEEEETTTTEEEEEEEEECSCHHHHHHH
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeE---------------------EEEEeCCCCCccceEEEEEECCHHHHHHH
Confidence 469999999999999999999999999999 88999988999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|..|||..|.|+.|.|.|+....
T Consensus 67 ~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 67 MRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp HHHSSSBSCSSSCBEEEETTCTT
T ss_pred HHHhCCCeeCCcEEEEEeCCCcc
Confidence 99999999999999999997643
No 87
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=144.08 Aligned_cols=81 Identities=28% Similarity=0.506 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a 118 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD---------------------IQIPLDYETEKHRGFAFVEFELAEDA 118 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEE---------------------EECCCCTTTCCCCSEEEEEESCHHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE---------------------EEEeecCCCCCcCcEEEEEECCHHHH
Confidence 345689999999999999999999999999999 88999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEe
Q 010771 214 KAAYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a 235 (501)
++||..|||..|+|+.|.|.||
T Consensus 119 ~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 119 AAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHhCCCEECCEEEEEEeC
Confidence 9999999999999999999986
No 88
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=135.54 Aligned_cols=83 Identities=14% Similarity=0.268 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+++++|+.+|++||.|.. |.|+.+ +|||||+|.+.++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~---------------------v~i~~~------kg~aFVef~~~~~ 63 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTN---------------------ILMLKG------KNQAFLELATEEA 63 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEE---------------------EEEETT------TTEEEEEESSHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEECC------CCEEEEEECCHHH
Confidence 3457789999999999999999999999999998 767643 7999999999999
Q ss_pred HHHHHHhc--CCceECCeEEEEEEecCCCCCC
Q 010771 213 MKAAYKQA--DGRKLDGRRVLVDVERGRTVPN 242 (501)
Q Consensus 213 a~~Al~~l--~g~~l~Gr~i~V~~a~~~~~~~ 242 (501)
|.+||..| ++..|.|+.|.|.|+.......
T Consensus 64 A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 64 AITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp HHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred HHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 99999976 5788999999999998765543
No 89
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=136.64 Aligned_cols=86 Identities=37% Similarity=0.643 Sum_probs=76.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 130 PNVSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 130 ~~~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
+.....+.++|||+|||+.+++++|+++|+.|+ . |.|+.+..++.++|||||+|.+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~---------------------~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 8 PNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---R---------------------ARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp TSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---E---------------------EEEEECSSSCSEEEEEEEECSS
T ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---E---------------------EEEEecCCCCCcCcEEEEEECC
Confidence 344456778999999999999999999999773 4 7788888889999999999999
Q ss_pred hhhHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 210 TRDMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
.++|++||..|||..|.|+.|.|.|+++..
T Consensus 64 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 64 EEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 999999999999999999999999998654
No 90
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=9.9e-18 Score=132.47 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
+|||+|||+.+++++|+.+|++||+|.. |.|+.++.++.++|||||+|.+.++|++||.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD---------------------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSE---------------------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 5999999999999999999999999999 8888888899999999999999999999996
Q ss_pred hcCCceECCeEEEEEEe
Q 010771 219 QADGRKLDGRRVLVDVE 235 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~~a 235 (501)
|+|..|+|+.|.|.+|
T Consensus 60 -~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 60 -IHFHEINNKMVECKKA 75 (75)
T ss_dssp -SSCCCSSSCCCEEECC
T ss_pred -CCCCEECCEEEEEEeC
Confidence 9999999999999875
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-18 Score=138.39 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+.+|++||.|.. |.|+.++.++.++|||||+|.+.++|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~---------------------~~i~~~~~~~~~~g~afV~f~~~~~a~ 61 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS---------------------TKAILDKTTNKCKGYGFVDFDSPSAAQ 61 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEE---------------------EEEECCSSSCSCCSEEEEEESCHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 35679999999999999999999999999999 899999889999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEec
Q 010771 215 AAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
+||..|||..|.|+.|+|.++.
T Consensus 62 ~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 62 KAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHHHHHHTCCEESCCSSCCC
T ss_pred HHHHHhcCCeEeeEEEeecCCC
Confidence 9999999999999999887653
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=6.4e-18 Score=138.43 Aligned_cols=81 Identities=27% Similarity=0.574 Sum_probs=73.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|||+|||..+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.+ |.+|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~ 59 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFN---------------------VKLIYDRETKKPKGFGFVEMQEES-VSEAI 59 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSE---------------------EEECCCSSSCCCCEEEEEEECTTH-HHHHH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEEcCCCCCcceEEEEEECCHH-HHHHH
Confidence 58999999999999999999999999999 899999889999999999999999 99999
Q ss_pred HhcCCceECCeEEEEEEecCCCC
Q 010771 218 KQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
..|||..|+|+.|.|.+|.....
T Consensus 60 ~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 60 AKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp HTSCSSCCSSSSCSEEEC-----
T ss_pred HHhCCCEECCeEEEEEEcCCCCC
Confidence 99999999999999999986544
No 93
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=140.46 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCc-ceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPI-KRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i-~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+.++|||+|||+.+|+++|+++|+.||.| .. |.|+.+. ++.++|||||+|.+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~---------------------v~i~~d~-~g~~~G~afV~F~~~~~ 69 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENA---------------------VHVLVDN-NGQGLGQALVQFKNEDD 69 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT---------------------EEECCCT-TSSCSSCEEEECSSHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe---------------------EEEEECC-CCCcceEEEEEECCHHH
Confidence 4456899999999999999999999999999 87 8899998 89999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|++||.. ||..|+|+.|.|.++...
T Consensus 70 a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 70 ARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp HHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred HHHHHHh-CCCccCCeEEEEEECCHH
Confidence 9999965 999999999999998753
No 94
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=131.86 Aligned_cols=76 Identities=24% Similarity=0.524 Sum_probs=72.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|||+|||+.+++++|+++|++||+|.. |.|+.++.++.++|||||+|.+.++|++||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 59 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE---------------------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 59 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC---------------------EEEECCCCSSSCSSEEEECCCCTTHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEecCCCCCCcCceEEEEEcCHHHHHHHH
Confidence 47999999999999999999999999998 889999889999999999999999999999
Q ss_pred HhcCCceECCeEEEEEEe
Q 010771 218 KQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a 235 (501)
..|+ ..|+|+.|.|.+|
T Consensus 60 ~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 60 AQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HTTT-CCCSSCCCEEEEC
T ss_pred HhCC-CccCCEEEEEEec
Confidence 9998 9999999999987
No 95
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.6e-17 Score=147.12 Aligned_cols=87 Identities=32% Similarity=0.558 Sum_probs=80.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 132 VSGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 132 ~~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
....+.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.+
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~---------------------v~i~~~~~~g~~~G~afV~F~~~~ 100 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD---------------------VYIPRDRYTKESRGFAFVRFHDKR 100 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE---------------------EECCCCSSSSSCCSCCEEECSCHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEecCCCCccceEEEEEECCHH
Confidence 33445679999999999999999999999999999 888888889999999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+|++||..|||..|.|+.|.|.|+++..
T Consensus 101 ~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 101 DAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999998644
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=132.30 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+.+|++||.|.. |.|+ +|||||+|.+.++|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~~~--------~g~afV~f~~~~~A~ 56 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLE---------------------CDII--------KNYGFVHIEDKTAAE 56 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEE---------------------EEEE--------TTEEEEEESSHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEE--------CCEEEEEECCHHHHH
Confidence 45689999999999999999999999999998 7775 689999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+||..|||..|.|+.|.|.|+.+...
T Consensus 57 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 57 DAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp HHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred HHHHHhcCCccCCcEEEEEECCCCCC
Confidence 99999999999999999999986543
No 97
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=137.91 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
....++|||+|||+.+|+++|+++|+.||.| . |.|+.+. +++++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~---------------------v~i~~d~-~g~~~G~afV~F~~~~~a 68 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-R---------------------VHIEIGP-DGRVTGEADVEFATHEDA 68 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-E---------------------EEEEESS-SSCEEEEEEEECSSSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-E---------------------EEEEECC-CCCEeeEEEEEECCHHHH
Confidence 3456799999999999999999999999954 7 8999997 899999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++|| .||+..|+|+.|.|.++....
T Consensus 69 ~~Al-~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 69 VAAM-AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp HHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred HHHH-HhCCCeECCcEEEEEECCCCC
Confidence 9999 689999999999999987543
No 98
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=6.3e-17 Score=135.40 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...|+++|||+|||+.+|+++|.++|++||.|.. |.|+. .+|||||+|.+.++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~---------------------v~i~~------~kg~AFVef~~~~~ 69 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISY---------------------VVVMP------KKRQALVEFEDVLG 69 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEET------TTTEEEEEESSHHH
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEE---------------------EEEEc------CCCEEEEEECCHHH
Confidence 3457789999999999999999999999999999 77753 47999999999999
Q ss_pred HHHHHHhcCCce--ECCeEEEEEEecCC
Q 010771 213 MKAAYKQADGRK--LDGRRVLVDVERGR 238 (501)
Q Consensus 213 a~~Al~~l~g~~--l~Gr~i~V~~a~~~ 238 (501)
|.+||..|+|.. |.|+.|.|+|++..
T Consensus 70 A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 70 ACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred HHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 999999999875 88999999999754
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=134.59 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|++||.|. |+.+ .++.++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~------------------------~~~~-~~g~~~g~afV~f~~~~~A 66 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK------------------------VPQN-QNGKSKGYAFIEFASFEDA 66 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE------------------------CCBC-SSSCBCSEEEEECSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE------------------------EEEC-CCCCEeeEEEEEECCHHHH
Confidence 44678999999999999999999999999762 3344 5788999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|||..|.|+.|.|.|+.+...
T Consensus 67 ~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 67 KEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp HHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred HHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 999999999999999999999987543
No 100
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=6.3e-17 Score=138.46 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..+|||+|||+.+++++|+++|++|| .|.. |.|+. ..++|||||+|.+.++|++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~---------------------v~i~~----~~~rGfaFV~F~~~e~A~~ 82 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTF---------------------SSVNT----RDFDGTGALEFPSEEILVE 82 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSE---------------------EECSS----CSSSCCEEEEESSHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEE---------------------EEEEc----CCCCCEEEEEECCHHHHHH
Confidence 46999999999999999999999999 8988 65532 3588999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
||..|||..|+|+.|.|+++...
T Consensus 83 Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 83 ALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHHHTTTEEETTEEEEEEESCC-
T ss_pred HHHHcCCCEECCeEEEEEECCCC
Confidence 99999999999999999999753
No 101
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=130.16 Aligned_cols=78 Identities=27% Similarity=0.531 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+ ++||||+|.+.++|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~---------------------v~~~--------~~~afV~f~~~~~a 57 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIE---------------------CDIV--------KDYAFVHMERAEDA 57 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCE---------------------EEEC--------SSEEEEEESCHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEE--------CCEEEEEECCHHHH
Confidence 446689999999999999999999999999998 7774 35999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|||..|.|+.|.|.|+.+...
T Consensus 58 ~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 58 VEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp HHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred HHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 999999999999999999999986543
No 102
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=135.47 Aligned_cols=78 Identities=17% Similarity=0.399 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||..+++++|+.+|+.||.|.. |.|+.+ +|||||+|.+.++|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~------~g~afV~f~~~~~a~~ 76 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIME---------------------IRVFPE------KGYSFVRFSTHESAAH 76 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEE---------------------EEEETT------TTEEEEEESSHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeCC------CCEEEEEECCHHHHHH
Confidence 4579999999999999999999999999998 777654 7999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
||..|+|..|.|+.|.|.|+...+.
T Consensus 77 A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 77 AIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp HHHHHTTCEETTEECEEECCCCCCS
T ss_pred HHHHcCCCEECCcEEEEEecCCCCC
Confidence 9999999999999999999987543
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.3e-17 Score=139.93 Aligned_cols=82 Identities=15% Similarity=0.300 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+|+++|+++|++||.|.. |.|+.+ +|||||+|.+.++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~---------------------v~i~~~------kG~AFVeF~~~e~ 79 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTN---------------------LLMLKG------KNQAFIEMNTEEA 79 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCE---------------------EEEEGG------GTEEEEECSCHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEeCC------CCEEEEEECCHHH
Confidence 3456789999999999999999999999999999 777754 6999999999999
Q ss_pred HHHHHHhcC--CceECCeEEEEEEecCCCCC
Q 010771 213 MKAAYKQAD--GRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 213 a~~Al~~l~--g~~l~Gr~i~V~~a~~~~~~ 241 (501)
|.+||..|+ +..|.|+.|.|.|+......
T Consensus 80 A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 80 ANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred HHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 999999887 46899999999999876543
No 104
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.2e-17 Score=135.92 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 133 SGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
..++.++|||+|||+ .+|+++|..+|++||.|.. |.|+.+ +|||||+|.+.+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~---------------------v~i~~~------kg~aFVef~~~~ 63 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN---------------------HLILNK------INEAFIEMATTE 63 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE---------------------EEECSS------SSCEEEEESSHH
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE---------------------EEEEcC------CCEEEEEECCHH
Confidence 345788999999999 9999999999999999999 777643 489999999999
Q ss_pred hHHHHHHhcCC--ceECCeEEEEEEecCC
Q 010771 212 DMKAAYKQADG--RKLDGRRVLVDVERGR 238 (501)
Q Consensus 212 ~a~~Al~~l~g--~~l~Gr~i~V~~a~~~ 238 (501)
+|++||..|+| ..|.|+.|.|.||...
T Consensus 64 ~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 64 DAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred HHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 99999999886 4599999999999853
No 105
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1.6e-16 Score=132.48 Aligned_cols=77 Identities=17% Similarity=0.433 Sum_probs=70.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 133 SGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
...+.++|||+|||+ .+++++|..+|+.||.|.. |.| .+|||||+|.+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~---------------------v~i--------~~g~afV~f~~~~ 68 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ---------------------INI--------KNAFGFIQFDNPQ 68 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE---------------------EEE--------CSSEEEEEESSHH
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE---------------------EEE--------eCCEEEEEECCHH
Confidence 345678999999998 9999999999999999998 666 3799999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+|.+||..|||..|+|+.|.|++++..
T Consensus 69 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 69 SVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp HHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 999999999999999999999998753
No 106
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-16 Score=130.46 Aligned_cols=78 Identities=31% Similarity=0.518 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESY--GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~--G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
..+.++|||+|||+.+++++|+.+|++| |.|.. |.+ .+|||||+|.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~---------------------~~~--------~~g~afV~f~~~~ 62 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER---------------------VKK--------IRDYAFVHFSNRE 62 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE---------------------EEE--------CSSEEEEEESSHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE---------------------EEE--------eCCeEEEEeCCHH
Confidence 3456899999999999999999999999 88887 655 3679999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+|++||..|||..|.|+.|.|.|+.+...
T Consensus 63 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 63 DAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp HHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 99999999999999999999999986543
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.4e-17 Score=133.48 Aligned_cols=79 Identities=28% Similarity=0.507 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.+ +|||||+|.+.++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~---------------------v~~~~~------~g~afV~f~~~~~A 66 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRT---------------------IDHVKG------DSFAYIQYESLDAA 66 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEE---------------------EEECSS------SCCEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEeCC------CCEEEEEECCHHHH
Confidence 345689999999999999999999999999998 767532 78999999999999
Q ss_pred HHHHHhcCCceEC--CeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLD--GRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~--Gr~i~V~~a~~~~ 239 (501)
++||..|||..|. |+.|.|.|+.+.+
T Consensus 67 ~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 67 QAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp HHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred HHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 9999999999999 9999999998644
No 108
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=4.2e-17 Score=157.38 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC--CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYG--PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..++|||+||+++||+++|+++|+.|| .|.. |.|+.++.|+.++|||||+|.+.++|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~---------------------v~i~~d~~tg~skGfaFV~f~~~~~a 125 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILE---------------------IKFFENRANGQSKGFALVGVGSEASS 125 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEE---------------------EEEEECTTTCCEEEEEEEEESCTTHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEE---------------------EEEEecCCCCccceEEEEEECCHHHH
Confidence 346899999999999999999999999 8998 99999999999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
++||..|||+.|.|+.|+|.++..
T Consensus 126 ~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 126 KKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp HHHHTTSTTSCBTTBCCEEEECCH
T ss_pred HHHHHHcCCCeECCEEeEEEECCC
Confidence 999999999999999999999863
No 109
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=132.01 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC-cceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGP-IKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~-i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+.++|||+|||+++|+++|+++|++||. |.. +.|. ++|||||+|.+.++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~---------------------~~~~-------~~g~afV~f~~~~~A 57 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG---------------------QVLL-------KSGYAFVDYPDQNWA 57 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS---------------------CEEE-------ETTEEEECCSCHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE---------------------EEEc-------CCCEEEEEECCHHHH
Confidence 45679999999999999999999999999 554 3332 479999999999999
Q ss_pred HHHHHhcCC-ceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADG-RKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g-~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..||| ..|+|+.|.|.|+.+...
T Consensus 58 ~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 58 IRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp HHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred HHHHHHccCCeeECCEEEEEEEccCccc
Confidence 999999999 999999999999986543
No 110
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.2e-17 Score=134.91 Aligned_cols=78 Identities=19% Similarity=0.474 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 135 DPYKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 135 ~~~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+.++|||+|||+ .+++++|..+|++||.|.. |.|. +|||||+|.+.++|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~---------------------v~i~--------~g~afV~f~~~~~A 58 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ---------------------INIK--------NAFGFIQFDNPQSV 58 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE---------------------EEEE--------TTEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE---------------------EEEe--------CCEEEEEECCHHHH
Confidence 4568999999999 9999999999999999998 6662 68999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~~ 241 (501)
++||..|+|..|.|+.|.|.|+.+...+
T Consensus 59 ~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 59 RDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp HHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred HHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 9999999999999999999999875543
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-17 Score=143.74 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
....+|||+|||+.+|+++|..+|+.||.|.. +.++.+..++.++|||||+|.+.++|+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~---------------------~~~~~~~~~g~~~G~afV~F~~~~~a~ 81 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVED---------------------SIYIAYGPNGKATGEGFVEFRNEADYK 81 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTT---------------------TCEEEECTTSSEEEEEEEEBSSSHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccc---------------------eEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 34579999999999999999999999999987 566667778999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+||. |||..|+|+.|.|.++..
T Consensus 82 ~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 82 AALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp HHHT-SCSBCSTTSCBEEEEECH
T ss_pred HHHH-hCCCeECCcEEEEEECCH
Confidence 9998 999999999999999864
No 112
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=9.7e-17 Score=138.73 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCC---cceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGP---IKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~---i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
...++|||+|||+++|+++|+++|+.||. |.. |.|+.+.. +.++|||||+|.+.+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~---------------------v~i~~~~~-g~~~G~afV~F~~~~ 72 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG---------------------VHFIYTRE-GRQSGEAFVELESED 72 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG---------------------EEEEECSS-SCEEEEEEEEBSSHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee---------------------EEEEECCC-CCCCeEEEEEECCHH
Confidence 35679999999999999999999999999 777 88998876 999999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+|++||. |||..|+|+.|.|.++..
T Consensus 73 ~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 73 DVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred HHHHHHh-cCCCeECCeEEEEEECCH
Confidence 9999997 999999999999999863
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.2e-16 Score=136.08 Aligned_cols=78 Identities=22% Similarity=0.466 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+++++++|..+|++||.|.. |.|+ +|||||+|.+.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~---------------------v~i~--------kg~afV~f~~~~~ 77 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKE---------------------VKIL--------NGFAFVEFEEAES 77 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCE---------------------EEEE--------TTEEEEECSSHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE---------------------EEEE--------CCEEEEEECCHHH
Confidence 3446689999999999999999999999999998 7775 6999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|++||..|||..|+|+.|.|.|+.+..
T Consensus 78 A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 78 AAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp HHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred HHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 999999999999999999999997643
No 114
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=3.7e-17 Score=129.05 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=71.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
||||+|||+.+++++|+.+|++||+|.. |.|+.+..++.++|||||+|.+.++|++||.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVES---------------------IELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSE---------------------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 6999999999999999999999999999 8888888899999999999999999999996
Q ss_pred hcCCceECCeEEEEEEe
Q 010771 219 QADGRKLDGRRVLVDVE 235 (501)
Q Consensus 219 ~l~g~~l~Gr~i~V~~a 235 (501)
++|..|+|+.|.|.+|
T Consensus 60 -~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 60 -KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp -TSSCCBTTBCCCEEEC
T ss_pred -hCCCeECCEEEEEEEC
Confidence 6999999999999875
No 115
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=134.57 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+. .+|||||+|.+.++|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~---------------------v~i~~------~kg~aFVef~~~~~A 64 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICY---------------------VMMMP------FKRQALVEFENIDSA 64 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEE---------------------EEEET------TTTEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEEC------CCCEEEEEECCHHHH
Confidence 456789999999999999999999999999998 76654 379999999999999
Q ss_pred HHHHHhcCCc--eECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGR--KLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~--~l~Gr~i~V~~a~~~~~ 240 (501)
.+||..|++. .|.|+.|.|.|+.....
T Consensus 65 ~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 65 KECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HHHHHHhccCCceECCEEEEEEEccCccc
Confidence 9999988664 59999999999986543
No 116
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=3.9e-16 Score=132.87 Aligned_cols=74 Identities=24% Similarity=0.505 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 136 PYKTLFVARLSYE-TTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 136 ~~~tlfVgnL~~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
+.++|||+|||+. +++++|+++|++||.|.. |.| ++|||||+|.+.++|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~---------------------v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAG---------------------CSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE---------------------EEE--------ETTEEEEECSSSHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE---------------------EEE--------eCCEEEEEECCHHHHH
Confidence 4579999999999 999999999999999998 666 5799999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+||..|+|..|+|+.|.|.|+...
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHcCCCEECCeEEEEEECCCC
Confidence 999999999999999999999753
No 117
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=2e-16 Score=146.64 Aligned_cols=84 Identities=23% Similarity=0.399 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. |.|+.+. ++.++|||||+|.+.++|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~---------------------v~i~~d~-~g~~kG~afV~F~~~~~A 142 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKK---------------------AAVDYDR-SGRSLGTADVHFERRADA 142 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSE---------------------EEECCCT-TSSCSCCEEEEESCHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEECC-CCCEeeEEEEEeCCHHHH
Confidence 345689999999999999999999999999999 8899987 899999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++||..|||..|+|+.|.|.|+....
T Consensus 143 ~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 143 LKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred HHHHHHhCCCEECCEEEEEEEecCCC
Confidence 99999999999999999999997643
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=126.87 Aligned_cols=76 Identities=25% Similarity=0.461 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||..+++++|+++|++||.|.. |.|+. .+|||||+|.+.++|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~---------------------~~~~~------~kg~afV~f~~~~~A 61 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRT---------------------ITVVQ------RQQCAFIQFATRQAA 61 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE---------------------EEEEG------GGTEEEEEESSHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE---------------------EEEEC------CCCEEEEEECCHHHH
Confidence 345679999999999999999999999999998 77764 369999999999999
Q ss_pred HHHHHhc-CCceECCeEEEEEEec
Q 010771 214 KAAYKQA-DGRKLDGRRVLVDVER 236 (501)
Q Consensus 214 ~~Al~~l-~g~~l~Gr~i~V~~a~ 236 (501)
++||..| +|..|+|+.|.|.|++
T Consensus 62 ~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 62 EVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp HHHHHTTTTTCEETTEECCEEECC
T ss_pred HHHHHHhcCCeeECCCEEEEEecC
Confidence 9999989 9999999999999974
No 119
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=136.73 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.+. ++.++|||||+|.+.++|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------~~i~~~~-~g~~~g~afV~f~~~~~a~ 80 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVIS---------------------TRILRDS-SGTSRGVGFARMESTEKCE 80 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEE---------------------EEEEECS-SSCEEEEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEEECC-CCCcceEEEEEECCHHHHH
Confidence 45679999999999999999999999999999 8899987 8999999999999999999
Q ss_pred HHHHhcCCceE--------CCeEEEEEEecC
Q 010771 215 AAYKQADGRKL--------DGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l--------~Gr~i~V~~a~~ 237 (501)
+||..|||..| .|+.|.|.|+.+
T Consensus 81 ~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 81 AVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 99999999999 578899999874
No 120
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=7.7e-17 Score=133.72 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech
Q 010771 135 DPYKTLFVARLSYETTESKIK----REFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT 210 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~ 210 (501)
.+.++|||+|||+.+++++|+ .+|++||.|.. |.|+. ++.++|||||+|.+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~---------------------v~i~~---~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD---------------------ILVSR---SLKMRGQAFVIFKEV 61 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE---------------------EECCH---HHHHTTCEEEEESSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE---------------------EEEEc---CCCcCcEEEEEeCCH
Confidence 466899999999999999999 99999999998 66652 577889999999999
Q ss_pred hhHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 211 RDMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
++|..||..|||..|+|+.|.|.|+.+.
T Consensus 62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 62 SSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 9999999999999999999999999764
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=131.36 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
....++|||+|||+.+++++|+.+|+.||.|. +.|+. +.++|||||+|.+.++|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~----------------------~~~~~----~~~~g~afV~f~~~~~a 69 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP----------------------LRLTW----QGPRRRAFLHYPDSAAA 69 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC----------------------SEEEE----ETTTTEEEEECSSHHHH
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE----------------------EEEEc----CCCCcEEEEEECCHHHH
Confidence 34568999999999999999999999999985 33433 46889999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
++||..|||..|+|+.|.|.++.+.
T Consensus 70 ~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 70 QQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp HHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred HHHHHHhCCCEECCcEEEEEEcCCC
Confidence 9999999999999999999999764
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-17 Score=130.98 Aligned_cols=72 Identities=29% Similarity=0.442 Sum_probs=66.5
Q ss_pred CEEEEcCCCCCC------CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 138 KTLFVARLSYET------TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 138 ~tlfVgnL~~~~------te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
++|||+|||+.+ ++++|..+|++||+|.. |.|+ ..+|.++|||||+|.+.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~---------------------v~i~--~~~g~~~g~afV~f~~~~ 58 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN---------------------DFYP--EEDGKTKGYIFLEYASPA 58 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE---------------------EECC--CBTTBCCCEEEEEESSHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE---------------------EEec--CCCCcEeEEEEEEECCHH
Confidence 689999999999 78999999999999998 6665 467899999999999999
Q ss_pred hHHHHHHhcCCceECCe-EEEE
Q 010771 212 DMKAAYKQADGRKLDGR-RVLV 232 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr-~i~V 232 (501)
+|++||..|||..|+|+ .|+|
T Consensus 59 ~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 59 HAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHhcCcccCCceeEEe
Confidence 99999999999999999 8876
No 123
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=132.46 Aligned_cols=76 Identities=30% Similarity=0.651 Sum_probs=71.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|||+|||+.+|+++|+++|++||+|.. |.|+.+ ++|||||+|.+.++|++||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~-----~~g~afV~f~~~~~a~~A~ 54 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT---------------------VWIARN-----PPGFAFVEFEDPRDAEDAV 54 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE---------------------EEEESS-----SSSEEEEECSSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeeC-----CCCEEEEEECCHHHHHHHH
Confidence 48999999999999999999999999999 777765 7899999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCCC
Q 010771 218 KQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
..|+|..|.|+.|.|.++....
T Consensus 55 ~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 55 RGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp HHHHHSCSSSCCCEEEESSSCC
T ss_pred HHHCCCeECCcEEEEEEccCCC
Confidence 9999999999999999998654
No 124
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=9.1e-17 Score=138.22 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=65.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+++++++|+++|++||+|.. |.|+.+ |||||+|.+.++|++|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~---------------------~~i~~~-------g~afV~f~~~~~a~~A 67 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCY---------------------ADVYRD-------GTGVVEFVRKEDMTYA 67 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEE---------------------EEECTT-------SEEEEEESSHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEecC-------CEEEEEECCHHHHHHH
Confidence 468999999999999999999999999999 777654 8999999999999999
Q ss_pred HHhcCCceECCeE-----EEEEEecC
Q 010771 217 YKQADGRKLDGRR-----VLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~-----i~V~~a~~ 237 (501)
|..|||..|+|+. |+|..+.+
T Consensus 68 i~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 68 VRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp HHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred HHHhCCCEECCcEeeeEEEEeccCCC
Confidence 9999999999998 66666554
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-16 Score=132.69 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||..+++++|+.+|+.||.|.. |.|+ .++|||||+|.+.++|.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~---------------------~~~~------~~~g~afV~f~~~~~A~~ 78 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD---------------------FKHY------PEKGCCFIKYDTHEQAAV 78 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE---------------------EEEE------TTTTEEEEECSSHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE---------------------EEEe------cCCCEEEEEECCHHHHHH
Confidence 3579999999999999999999999999999 7775 467999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
||..|||..|+|+.|.|.|+++
T Consensus 79 Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 79 CIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HHHHHTTCEETTEECCCCBCCC
T ss_pred HHHHhCCCeECCeEEEEEeccC
Confidence 9999999999999999999864
No 126
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=130.47 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+.+|++||.|.. |.|+. .+|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------v~~~~------~kg~afV~f~~~~~a 64 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE---------------------VFIHK------DKGFGFIRLETRTLA 64 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE---------------------EEEET------TTTEEEEECSSSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE---------------------EEEec------CCCEEEEEECCHHHH
Confidence 345689999999999999999999999999998 77753 379999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++||..|+|..|.|+.|.|.|+....
T Consensus 65 ~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 65 EIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp HHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred HHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 99999999999999999999998644
No 127
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-17 Score=136.50 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+++|+++|+.+|+.||.|.. . ++.+..++.++|||||+|.+.++|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~---------------------~~~~~~~g~~~g~afV~f~~~~~a 71 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-L---------------------AVVDVRTGTNRKFGYVDFESAEDL 71 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C---------------------CCCEEEEETTTTEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E---------------------EEecCCCCCcCcEEEEEECCHHHH
Confidence 345679999999999999999999999999876 1 233445688999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
++||. |||..|.|+.|.|.++.++.
T Consensus 72 ~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 72 EKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp HHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred HHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 99998 99999999999999997643
No 128
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=129.21 Aligned_cols=77 Identities=21% Similarity=0.403 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+++|+++|+.+|+.||.|.. | +.+..++. ||||+|.+.++|++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~---------------------v--~~~~~~g~---~afV~f~~~~~a~~ 60 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS---------------------V--VMDKDKGV---FAIVEMGDVGAREA 60 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEE---------------------E--EECSSSCC---EEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE---------------------E--EEcCCCCc---EEEEEECCHHHHHH
Confidence 4579999999999999999999999999987 6 55555555 99999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||. |+|..|+|+.|.|.++....
T Consensus 61 ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 61 VLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp HHT-CSCCEETTEECCCBCSCCSC
T ss_pred HHh-cCCeEECCEEEEEEECCcCC
Confidence 998 99999999999999886543
No 129
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=2.5e-16 Score=135.03 Aligned_cols=79 Identities=25% Similarity=0.468 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+++++|..+|+.||.|.. |.|+.+ +.++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~---------------------v~i~~~---~~~~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---------------------IRVGNT---PETRGTAYVVYEDIFDAK 61 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EEEECS---TTTTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeeC---CCCCcEEEEEECCHHHHH
Confidence 45689999999999999999999999999999 777754 556899999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+||..|||..|+|+.|.|.|+.+
T Consensus 62 ~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 62 NAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HHHHHHTTCBSSSCBCEEEECCH
T ss_pred HHHHHcCCCEECCeEEEEEEecC
Confidence 99999999999999999999975
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=126.81 Aligned_cols=75 Identities=27% Similarity=0.467 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+|+++|+.+|++||.|.. |.|+ ++||||+|.+.++|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~---------------------~~~~--------~~~afV~f~~~~~a~ 57 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIE---------------------CDVV--------KDYAFVHMEKEADAK 57 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEE---------------------EEEC--------SSCEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE---------------------EEEE--------CCEEEEEECCHHHHH
Confidence 45679999999999999999999999999998 7774 359999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+||..|||..|+|+.|.|.|+.+.
T Consensus 58 ~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 58 AAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHhCCCEECCcEEEEEECCCC
Confidence 999999999999999999999764
No 131
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=132.15 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
...++|||+|||+.+|+++|+++|+.||.|... |.|+.+ .++.++|||||+|.+.++|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~--------------------v~i~~~-~~g~~~G~afV~F~~~~~a~ 71 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG--------------------MTLPVD-FQGRSTGEAFVQFASQEIAE 71 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEE--------------------EECCBC-SSSCBCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccee--------------------EEEEEC-CCCCcceEEEEEECCHHHHH
Confidence 456799999999999999999999999999751 556677 78999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||.. +|..|+|+.|.|.++....
T Consensus 72 ~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 72 KALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp HHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred HHHHh-CcchhCCcEEEEEECCHHH
Confidence 99976 9999999999999987544
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=2.8e-16 Score=149.55 Aligned_cols=83 Identities=24% Similarity=0.438 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..|.+||||||||+++|+++|+++|++||+|.+ |.|+.+..|+.++|||||+|.+.++|
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~---------------------v~i~~d~~tg~~~G~afV~F~~~~~A 70 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILS---------------------IRVCRDMITRRSLGYAYVNFQQPADA 70 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE---------------------EEEecccCCCCccccccceeCCHHHH
Confidence 346789999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
.+||..|+|..+.|+.|.|.++..
T Consensus 71 ~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 71 ERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHhhhhhcCCcccccccccc
Confidence 999999999999999999999864
No 133
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.3e-16 Score=141.44 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCC---cceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGP---IKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~---i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..++|||+|||+++|+++|+++|+.||. |.. |.|+.+.. |.++|||||+|.+.++
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~---------------------v~i~~d~~-g~srG~aFV~F~~~e~ 100 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG---------------------VHFIYTRE-GRQSGEAFVELGSEDD 100 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT---------------------EEEEECSS-SCEEEEEEEECSSHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE---------------------EEEEECCC-CCCCeEEEEEECCHHH
Confidence 4579999999999999999999999999 777 88999987 9999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|++||. |||..|+|+.|.|.++..
T Consensus 101 a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 101 VKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHHHHT-TTEEESSSSEEEEEECCH
T ss_pred HHHHHh-cCCCEECCEEEEEEECCh
Confidence 999998 999999999999999853
No 134
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=131.39 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+.+|+.||.|.. | ..++.++|||||+|.+.++|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~---------------------~-----~~~~~~~g~afV~f~~~~~a 66 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRL---------------------V-----SQDGKSKGIAYIEFKSEADA 66 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECC---------------------E-----EETTEEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE---------------------e-----CCCCCcceEEEEEECCHHHH
Confidence 345689999999999999999999999998876 4 24688999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
.+||..|+|..|+|+.|.|.++.+..
T Consensus 67 ~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 67 EKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp HHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred HHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999997643
No 135
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=134.11 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|||+|||+.+|+++|+++|+.| .|.. |.|+.+.. |.++|||||+|.+.++|++|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~---------------------v~i~~d~~-g~~~G~afV~F~~~~~a~~A 72 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDA---------------------VHLLKDHV-GRNNGNGLVKFLSPQDTFEA 72 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCE---------------------EEECCCTT-CCCCSEEEEECSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeE---------------------EEEEECCC-CCCCeEEEEEECCHHHHHHH
Confidence 3689999999999999999999999 8888 88998875 99999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecC
Q 010771 217 YKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~ 237 (501)
| .|||..|+|+.|.|..+..
T Consensus 73 l-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 73 L-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp H-HTTTEEETTEEEEEEECCH
T ss_pred H-hcCCCeECCeEEEEEECCc
Confidence 9 7999999999999988753
No 136
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=4.8e-17 Score=144.77 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+++|+++|+++|++|| |.. |.|+.++. ++++|||||+|.+.++|++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~---------------------v~i~~d~~-g~srGfaFV~F~~~e~A~~ 101 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVR---------------------VHIEIGPD-GRVTGEADVEFATHEEAVA 101 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE---------------------EECCCSSS-SCSSCCCEEECSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE---------------------EEEEECCC-CCCceEEEEEeCCHHHHHH
Confidence 457899999999999999999999999 667 88888875 9999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|| .||+..|+|+.|.|.++....
T Consensus 102 Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 102 AM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HH-hhCCCEECCEEEEEEECCCCC
Confidence 99 899999999999999987644
No 137
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=126.84 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|| .+|+++|+.+|++||.|.. |.|. .++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~---------------------v~i~------~~~g~afV~f~~~~~a 62 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIID---------------------LSMD------PPRNCAFVTYEKMESA 62 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEE---------------------EEEE------TTTTEEEEEESSHHHH
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEE---------------------EEec------CCCCEEEEEECCHHHH
Confidence 346689999996 8999999999999999998 6663 5789999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
++||..|+|..|.|+.|.|.|+.+...
T Consensus 63 ~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 63 DQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp HHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred HHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 999999999999999999999986544
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=136.04 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCC---cceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGP---IKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT 210 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~---i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~ 210 (501)
.....+|||+|||+++|+++|+++|+.||. |.. |.|+.+.. |.++|||||+|.+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~---------------------v~i~~~~~-g~~~G~afV~F~~~ 65 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG---------------------IHFLLNRD-GKRRGDALIEMESE 65 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTT---------------------EECCCCTT-STTCSEEEEEBSSH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcce---------------------EEEEECCC-CCEeeEEEEEECCH
Confidence 345679999999999999999999999998 787 88888877 99999999999999
Q ss_pred hhHHHHHHhcCCceECCeEEEEEEecC
Q 010771 211 RDMKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
++|++||. |+|..|+|+.|.|.++..
T Consensus 66 ~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 66 QDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred HHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 99999997 999999999999999864
No 139
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.4e-16 Score=135.44 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=71.4
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec----
Q 010771 138 KTLFVARL----SYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH---- 209 (501)
Q Consensus 138 ~tlfVgnL----~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~---- 209 (501)
+.|||+|| |+.|++..|+.+|+.||+|.+ |.++.|+.||.++|||||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~---------------------~~li~Dp~Tg~slGfgfVef~d~~g~ 61 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH---------------------FEAFNDPNSALPLHVYLIKYASSDGK 61 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE---------------------EEEEECTTTCCEEEEEEEECC-----
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEecCCCCceeeEEEEEECCCCCC
Confidence 58999999 999999999999999999999 9999999999999999999996
Q ss_pred hhh----HHHHHH--hcCCceECCeEEEEEEec
Q 010771 210 TRD----MKAAYK--QADGRKLDGRRVLVDVER 236 (501)
Q Consensus 210 ~~~----a~~Al~--~l~g~~l~Gr~i~V~~a~ 236 (501)
+.+ |.+||. .|+|..|+|+.|+|.+-.
T Consensus 62 ~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 62 INDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp -CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred cchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 333 888988 789999999999999864
No 140
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-16 Score=135.96 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 134 GDPYKTLFVARLSYE-TTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+.++|||+|||++ +++++|+++|++||.|.. |.|+. .+|||||+|.+.++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~---------------------v~i~~------~kg~aFVef~~~~~ 74 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN---------------------YILMR------MKSQAFIEMETRED 74 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE---------------------EEEET------TTTEEEEECSSHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE---------------------EEEec------CCCEEEEEECCHHH
Confidence 456789999999998 999999999999999999 77753 57999999999999
Q ss_pred HHHHHHhcC--CceECCeEEEEEEecCCCCC
Q 010771 213 MKAAYKQAD--GRKLDGRRVLVDVERGRTVP 241 (501)
Q Consensus 213 a~~Al~~l~--g~~l~Gr~i~V~~a~~~~~~ 241 (501)
|++||..|+ +..|.|+.|.|.|+......
T Consensus 75 A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 75 AMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp HHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred HHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 999999885 45699999999999865443
No 141
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=9.4e-17 Score=143.24 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceee--ecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLI--CNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~--~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
..+.++|||+|||+.+|+++|..+|+.||.|..+. ++ +.|.. ..++.++|||||+|.+.+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~-----------------~di~~-~~~g~~~g~afV~f~~~~ 103 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIM-----------------FDIRL-MKEGRMKGQAFIGLPNEK 103 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHH-----------------CEEEE-EEETTTEEEEEEECSSHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccce-----------------eeEEe-ccCCCcccEEEEEeCCHH
Confidence 45678999999999999999999999999998731 00 11111 246889999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+|.+||..|||..|.|+.|.|.|+...
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999999999999999753
No 142
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-17 Score=142.41 Aligned_cols=92 Identities=27% Similarity=0.333 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+++++|+++|+.||.|..+.. ...+.|.|+.++.++.++|||||+|.+.++|++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~-------------~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKK-------------TGQPMINLYTDRETGKLKGEATVSFDDPPSAKA 72 (116)
Confidence 4579999999999999999999999999976210 001115677777889999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
||..|||..|.|+.|.|.++.+...
T Consensus 73 Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 73 AIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999999999999986543
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=3e-16 Score=131.53 Aligned_cols=79 Identities=23% Similarity=0.517 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+++++|..+|+.||.|.. |.|+.+. ++.++|||||+|.+.++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~-~g~~~g~afV~f~~~~~a~~ 65 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKE---------------------VKIITDR-TGVSKGYGFVSFYNDVDVQK 65 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECT-TSCEEEEEEEEESSCCCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE---------------------EEEEECC-CCCccceEEEEECCHHHHHH
Confidence 4579999999999999999999999999999 8999998 89999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
||. +|..|+|+.|.|.++...
T Consensus 66 Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 66 IVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp HTT--CCCEETTEECEEEEEEEC
T ss_pred HHh--CCCeECCEEEEEEECCcC
Confidence 996 999999999999998753
No 144
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=132.88 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+.+++++|+.+|++||.|.. |.|+. .+|||||+|.+.++|++|
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~---------------------v~i~~------~~g~afV~f~~~~~A~~A 62 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGR---------------------VLLPE------GGITAIVEFLEPLEARKA 62 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EECCS------SSSCEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEE---------------------EEEeC------CCCEEEEEeCCHHHHHHH
Confidence 469999999999999999999999999988 66642 678999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|..|||..|.|+.|.|+|+....
T Consensus 63 i~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 63 FRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHHTTCBSSSSBCEEEEEETTT
T ss_pred HHHhCCCEECCeEEEEEECCCCc
Confidence 99999999999999999997643
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=130.68 Aligned_cols=80 Identities=16% Similarity=0.298 Sum_probs=70.2
Q ss_pred CCCCCCEEEE--cCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEech
Q 010771 133 SGDPYKTLFV--ARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHT 210 (501)
Q Consensus 133 ~~~~~~tlfV--gnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~ 210 (501)
...|+++||| |||++.+++++|+++|++||.|.. |.|+. .+|||||+|.+.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~---------------------v~i~~------~rgfaFV~f~~~ 73 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA---------------------LLMPP------NKPYSFARYRTT 73 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE---------------------EECCT------TCSCEEEEESSH
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeC------CCCEEEEEECCH
Confidence 3456789999 789999999999999999999988 65542 378999999999
Q ss_pred hhHHHHHHhcCCceE-----CCeEEEEEEecCCC
Q 010771 211 RDMKAAYKQADGRKL-----DGRRVLVDVERGRT 239 (501)
Q Consensus 211 ~~a~~Al~~l~g~~l-----~Gr~i~V~~a~~~~ 239 (501)
++|++||..|||..| .|..|.|.++...+
T Consensus 74 ~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 74 EESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp HHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred HHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 999999999999999 78999999997543
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=7.7e-16 Score=138.41 Aligned_cols=79 Identities=32% Similarity=0.621 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+|+++|..+|+.||.|.. |.|+.+ ++|||||+|.+.++|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~-----~~g~afV~f~~~~~a 123 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRS---------------------VWVARN-----PPGFAFVEFEDPRDA 123 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEE---------------------EEECSS-----SCSEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEE---------------------EEEeeC-----CCcEEEEEECCHHHH
Confidence 445689999999999999999999999999999 777654 689999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
..||..|||..|+|+.|.|.|+.+.
T Consensus 124 ~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 124 ADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999999764
No 147
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=135.42 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCc----ceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPI----KRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i----~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+|||+|||+++|+++|+++|+.||.| .. |.|+.+ .+|+++|||||+|.+.++
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~---------------------v~i~~d-~~gr~~G~aFV~F~~~~~ 80 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEG---------------------ILFVTY-PDGRPTGDAFVLFACEEY 80 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGG---------------------EEEEEC-TTSCEEEEEEECCSSHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcce---------------------EEEEEC-CCCCEeeEEEEEECCHHH
Confidence 4699999999999999999999999986 46 888888 489999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEec
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|++||. +++..|+|+.|.|..+.
T Consensus 81 A~~Al~-~~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 81 AQNALR-KHKDLLGKRYIELFRST 103 (123)
T ss_dssp HHHHHT-TTTEESSSCEECCEEEC
T ss_pred HHHHHH-hCCCeeCCeEEEEEECC
Confidence 999996 59999999999999875
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.3e-15 Score=135.84 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+..+|||+|||..+++++|.++|+.||.|.. |.|+.+..++.++|||||+|.+.++
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~---------------------~~i~~~~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLS---------------------GHVMWDMQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEE---------------------EEEEECTTTCCEEEEEEEEESCHHH
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeE---------------------EEEEecCCCCCcceEEEEEeCCHHH
Confidence 3456779999999999999999999999999999 8899998899999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEec
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|.+||..|||..|+|+.|.|.||+
T Consensus 142 A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 142 AQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999985
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.5e-16 Score=126.92 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceE-EEeecCCCCCCCceEEEEEechhhHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKV-RLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v-~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
..++|||+|||+.+++++|+.+|+.||.|.. | .|+.+..++ .|||+|.+.++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~---------------------~~~i~~~~~~~----~afV~f~~~~~a~ 68 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVES---------------------CEQVNTDSETA----VVNVTYSSKDQAR 68 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEE---------------------EEEECCSSSSE----EEEEEESSHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeecCCCCC----EEEEEECCHHHHH
Confidence 4579999999999999999999999999998 7 476665443 4999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+||..|||..|+|+.|.|.++.+.
T Consensus 69 ~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 69 QALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHhCCCEECCcEEEEEEcCcc
Confidence 999999999999999999999765
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=1.9e-15 Score=136.50 Aligned_cols=81 Identities=28% Similarity=0.488 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+.+++++|.++|+.||.|.. |.|+.+..+|.++|||||+|.+.++|.+|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~---------------------v~~~~~~~~~~~~g~afV~f~~~~~A~~a 60 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIES---------------------CKLVRDKITGQSLGYGFVNYIDPKDAEKA 60 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEEeCCCCCcceeEEEEEECCHHHHHHH
Confidence 479999999999999999999999999999 88999988999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+..|+|..|.|+.|.|.++.+.
T Consensus 61 ~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 61 INTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp HHHHTTCEETTEECEEEECCCC
T ss_pred HHHcCCCccCCceEEEEecCCC
Confidence 9999999999999999998753
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.2e-15 Score=144.13 Aligned_cols=86 Identities=28% Similarity=0.485 Sum_probs=80.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||..+++++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|.+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~---------------------v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKS---------------------ATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeE---------------------EEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 3469999999999999999999999999999 8999998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTVPN 242 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~~~ 242 (501)
||..|||..|+|+.|.|.|+...+.+.
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 999999999999999999998765544
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=8.9e-16 Score=134.20 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcc--eeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIK--RLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~--~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..++|||+|||+++|+++|+++|+.| .|. . |.|+.++. |.++|||||+|.+.++|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~---------------------v~i~~d~~-GrsrGfaFV~F~~~e~A 97 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNG---------------------ITLPVDPE-GKITGEAFVQFASQELA 97 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEE---------------------EECCCCSS-SSSCSEEEEEESSTTHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeE---------------------EEEEECCC-CCCceEEEEEECCHHHH
Confidence 45789999999999999999999999 565 6 88888876 99999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
++||. +++..|+|+.|.|.++..
T Consensus 98 ~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 98 EKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HHHHT-TTTCCBTTBCCCCEEECH
T ss_pred HHHHH-HCCCEECCEEEEEEECCH
Confidence 99996 688999999999998753
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=1.7e-15 Score=137.33 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+++++|.++|+.||+|.. |.|+.++.++.++|||||+|.+.++|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~---------------------v~i~~~~~~~~~~g~afV~f~~~~~A~~ 60 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINT---------------------CRIMRDYKTGYSYGYAFVDFTSEMDSQR 60 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEE---------------------EECCEETTTTEECSEEEEEESSHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE---------------------EEEEEeCCCCccceEEEEEECCHHHHHH
Confidence 4579999999999999999999999999999 8888888899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|+..|+|..|.|+.|.|.|+.+.
T Consensus 61 a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 61 AIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp HHHHHTTCEETTEECEEEECCCC
T ss_pred HHHhcCCCEeCCcEEEEEecCCC
Confidence 99999999999999999998753
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=4.3e-15 Score=138.48 Aligned_cols=85 Identities=28% Similarity=0.484 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|.++|++||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~---------------------~~~~~~~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKA---------------------FNLVKDSATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEE---------------------EEEEECTTTCSEEEEEEEEESSSSHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccE---------------------EEEeecCCCCCcceEEEEEECCHHHH
Confidence 346689999999999999999999999999998 88999988999999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
.+||..|||..|+|+.|.|.|+.+..
T Consensus 170 ~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 170 DQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999997643
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=1.7e-15 Score=123.60 Aligned_cols=76 Identities=12% Similarity=0.264 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+.+++++|+++|++| .|.. |.|. .++|||||+|.+.++|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~---------------------~~i~------~~~g~afV~f~~~~~a~~ 55 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY---------------------CYVD------RNKRTAFVTLLNGEQAQN 55 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC---------------------EEEE------GGGTEEEECCSCHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE---------------------EEEe------CCCcEEEEEECCHHHHHH
Confidence 35789999999999999999999999 9988 6663 578999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||..|||..|+|+.|.|+|+....
T Consensus 56 Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 56 AIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHHHTTEEETTEEEEEEECCCCC
T ss_pred HHHHhCCCeECCcEEEEEEcCCCc
Confidence 999999999999999999996543
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=4.8e-15 Score=134.99 Aligned_cols=79 Identities=29% Similarity=0.516 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+.+++++|.++|++||.|.. |.|+.+..++.++|||||+|.+.++|.+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKA---------------------FNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceE---------------------EEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 4679999999999999999999999999999 8899998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEe
Q 010771 216 AYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a 235 (501)
|+..|||..|+|+.|.|.||
T Consensus 152 A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 152 AIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHHTTCEETTEECEEEEC
T ss_pred HHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999997
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.58 E-value=3.7e-15 Score=138.71 Aligned_cols=83 Identities=24% Similarity=0.459 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV---------------------IEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEE---------------------EEEeecCCCCCccceEEEEECCHHHHHH
Confidence 4579999999999999999999999999999 8899998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
||.. +|..|+|+.|.|.|+.++..
T Consensus 162 A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 162 IVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HHHC-SCCEETTEECEEEECC----
T ss_pred HHHh-CCcEECCEEEEEEecCChhH
Confidence 9965 89999999999999986543
No 158
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=122.22 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=64.8
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHHHhc-CCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 136 PYKT-LFVARLSYETTESK----IKREFESY-GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 136 ~~~t-lfVgnL~~~~te~~----l~~~F~~~-G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
|+.| |||+|||+.+++++ |.++|++| |+|.. | |+ |||||+|.+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~---------------------V-------tg---G~AfV~F~~ 55 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS---------------------I-------TG---CSAILRFIN 55 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE---------------------C-------CT---TCEEEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE---------------------E-------ec---CEEEEEECC
Confidence 4556 99999999999987 55899999 59987 3 34 999999999
Q ss_pred hhhHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 210 TRDMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
.++|..|++.|+|..|.|++|+|.+|+...
T Consensus 56 ~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 56 QDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp HHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred HHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 999999999999999999999999998644
No 159
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=5.1e-15 Score=121.37 Aligned_cols=73 Identities=19% Similarity=0.356 Sum_probs=61.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+..+|||+|||+++|+++|+++|++||.|.. |.|+.+ ++|||||+|.+.++|++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~---------------------v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVD---------------------VFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEE---------------------EECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEE---------------------EEEeeC-----CCCEEEEEECCHHHHHH
Confidence 4579999999999999999999999999999 777653 78999999999999883
Q ss_pred HHHhcCCce--ECCeEEEEEEecCC
Q 010771 216 AYKQADGRK--LDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~--l~Gr~i~V~~a~~~ 238 (501)
|+|.. +.|+.|.|.++.++
T Consensus 64 ----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 64 ----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp ----HTTCEEEETTEEEEEEECC--
T ss_pred ----HcCCCcccCCEEEEEEEcCCC
Confidence 45554 56999999998754
No 160
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=1.3e-14 Score=126.35 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=67.5
Q ss_pred CCCCE--EEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCce-EEEEEechh
Q 010771 135 DPYKT--LFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGY-AFIEYMHTR 211 (501)
Q Consensus 135 ~~~~t--lfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~-aFVef~~~~ 211 (501)
.++++ |||+||++.+|+++|..+|++||.|.. |.|+. + .|| |||+|.+.+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~---------------------v~i~~-~-----~Gf~aFVef~~~~ 73 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQR---------------------IVIFK-R-----NGIQAMVEFESVL 73 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEE---------------------EEEEE-S-----SSEEEEEEESSHH
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEE---------------------EEEEe-C-----CCCEEEEEECCHH
Confidence 34554 679999999999999999999999999 66653 1 286 999999999
Q ss_pred hHHHHHHhcCCceECC--eEEEEEEecCCC
Q 010771 212 DMKAAYKQADGRKLDG--RRVLVDVERGRT 239 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~G--r~i~V~~a~~~~ 239 (501)
+|..|+..|||..|.| ..|+|++|++..
T Consensus 74 ~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 74 CAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 9999999999999988 689999998653
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=2.5e-15 Score=136.21 Aligned_cols=80 Identities=19% Similarity=0.400 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|||+|||+.+++++|.++|+.||.|.. |.|+.+..++.++|||||+|.+.++|.+|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~---------------------~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIID---------------------AQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSE---------------------EECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEE---------------------EEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 468999999999999999999999999999 88888888999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|. |+|..|+|+.|.|.||.++
T Consensus 146 ~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 146 CQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HH-CSEECSSSSCEEEEECCCC
T ss_pred Hh-CCCEEeCCeEEEEeecCCC
Confidence 96 9999999999999999764
No 162
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-15 Score=121.81 Aligned_cols=76 Identities=18% Similarity=0.327 Sum_probs=64.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+++++|+.+|++||.|.. |.|+.+ ++|||||+|.+.++|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------------v~i~~~-----~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMD---------------------VFIPKP-----FRAFAFVTFADDQIAQS 57 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCE---------------------EECCSS-----CCSCCEEECSCHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE---------------------EEEecC-----CCCEEEEEECCHHHHHH
Confidence 4679999999999999999999999999999 766543 78999999999999986
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|+. .+..+.|..|.|.++.+..
T Consensus 58 ~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 58 LCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp TTT--CEEEETTEEEEEECCCCCC
T ss_pred Hhc--CCceeCCEEEEEEecCCCC
Confidence 532 2345699999999987654
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=6.7e-15 Score=136.94 Aligned_cols=82 Identities=30% Similarity=0.607 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
...++|||+|||+++|+++|+++|+.||.|.. |.|+.++.++.++|||||+|.+.++|.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~A~ 69 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTD---------------------CVVMRDPNTKRSRGFGFVTYATVEEVD 69 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEEEcCCCCCccceEEEEeCCHHHHH
Confidence 35679999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+||. ++|..|.|+.|.|.++...
T Consensus 70 ~A~~-~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 70 AAMN-ARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp HHHH-TCSCEETTEECEEEECCC-
T ss_pred HHHh-cCCCEECCEEeeeecccCc
Confidence 9996 5999999999999998654
No 164
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=6.6e-15 Score=133.78 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=68.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.+|||+||++.+|+++|.++|++||.|.. |.|+. ..++|||||+|.+.++|++|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~---------------------V~i~~----k~~rgfAFVeF~d~~~A~~Ai 101 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLK---------------------IITFT----KNNQFQALLQYADPVSAQHAK 101 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEE---------------------EEEEE----SSSCEEEEEEESCHHHHHHHH
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEE---------------------EEEEe----CCCCCEEEEEECCHHHHHHHH
Confidence 47999999999999999999999999999 66653 236789999999999999999
Q ss_pred HhcCCceECC--eEEEEEEecCCC
Q 010771 218 KQADGRKLDG--RRVLVDVERGRT 239 (501)
Q Consensus 218 ~~l~g~~l~G--r~i~V~~a~~~~ 239 (501)
..|||..|.| +.|+|+|++...
T Consensus 102 ~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 102 LSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHhCCCEecCCCcEEEEEEecCCc
Confidence 9999999965 999999998653
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=7.7e-15 Score=118.95 Aligned_cols=71 Identities=21% Similarity=0.457 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc----C-------CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEE
Q 010771 136 PYKTLFVARLSYETTESKIKREFESY----G-------PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAF 204 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~----G-------~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aF 204 (501)
+.++|||+|||+.+++++|+++|++| | .|.. |.|+. .+||||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~---------------------~~~~~------~kg~af 57 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA---------------------VQINQ------DKNFAF 57 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEE---------------------EEECS------SSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceE---------------------EEecC------CCcEEE
Confidence 45799999999999999999999999 8 7777 66643 379999
Q ss_pred EEEechhhHHHHHHhcCCceECCeEEEEEE
Q 010771 205 IEYMHTRDMKAAYKQADGRKLDGRRVLVDV 234 (501)
Q Consensus 205 Vef~~~~~a~~Al~~l~g~~l~Gr~i~V~~ 234 (501)
|+|.+.++|++|| .|||..|.|+.|.|..
T Consensus 58 V~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 58 LEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp EEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred EEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 9999999999999 9999999999999973
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.2e-14 Score=127.26 Aligned_cols=76 Identities=17% Similarity=0.327 Sum_probs=68.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCce-EEEEEechhhHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGY-AFIEYMHTRDMKAA 216 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~-aFVef~~~~~a~~A 216 (501)
-.|||+||++.+|+++|.++|++||.|.. |.|+.. .+|| |||+|.+.++|++|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~---------------------V~i~~~-----~~gfqAFVef~~~~~A~~A 82 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLK---------------------IITFTK-----NNQFQALLQYADPVSAQHA 82 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEE---------------------EEEEEE-----TTEEEEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEE---------------------EEEEcC-----CCCcEEEEEECCHHHHHHH
Confidence 36889999999999999999999999999 766543 3688 99999999999999
Q ss_pred HHhcCCceECC--eEEEEEEecCCC
Q 010771 217 YKQADGRKLDG--RRVLVDVERGRT 239 (501)
Q Consensus 217 l~~l~g~~l~G--r~i~V~~a~~~~ 239 (501)
+..|||..|.| ..|+|+|++...
T Consensus 83 i~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 83 KLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHHcCCCeecCCCcEEEEEecCCCc
Confidence 99999999988 999999998643
No 167
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=7.5e-15 Score=127.49 Aligned_cols=77 Identities=21% Similarity=0.416 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|| ++|+++|+.+|++||.|.. |.|+ .++|||||+|.+.++|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~---------------------v~i~------~~kg~aFV~f~~~~~A~ 87 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIID---------------------LSMD------PPRNCAFVTYEKMESAD 87 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSC---------------------EEEE------TTTTEEEEECSSHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEE---------------------EEEe------CCCCEEEEEECCHHHHH
Confidence 45689999996 6999999999999999998 7764 57899999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRTV 240 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~~ 240 (501)
+||..|||..|+|+.|.|.|+.....
T Consensus 88 ~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 88 QAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp HHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred HHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 99999999999999999999986543
No 168
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=1.5e-14 Score=122.41 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC-CCCCceEEEEE
Q 010771 134 GDPYKTLFVARLSY-----ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET-NKPRGYAFIEY 207 (501)
Q Consensus 134 ~~~~~tlfVgnL~~-----~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t-~~~~g~aFVef 207 (501)
..++++|+|.||.. ..++++|+++|++||.|.. |.|+.++.+ +.++|||||+|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~---------------------v~i~~~~~~~~~~~G~~FV~f 63 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGK---------------------CVIFEIPGAPDDEAVRIFLEF 63 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEE---------------------EEEEECSSCCTTTSEEEEEEE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEE---------------------EEEecCCCCCCCCcEEEEEEE
Confidence 34678999999963 2378999999999999999 888887654 68899999999
Q ss_pred echhhHHHHHHhcCCceECCeEEEEEEecC
Q 010771 208 MHTRDMKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 208 ~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 64 ~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 64 ERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 999999999999999999999999999864
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=7.6e-15 Score=139.54 Aligned_cols=79 Identities=23% Similarity=0.487 Sum_probs=73.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
..+|||+|||+.+|+++|+++|+.||.|.. |.|+.+. +.++|||||+|.+.++|++|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~---------------------~~i~~d~--~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILS---------------------CKVVCDE--NGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEEET--TEEEEEEEEEESSHHHHHHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEE---------------------EEeeccC--CCCceEEEEEeCCHHHHHHH
Confidence 468999999999999999999999999999 8888875 45789999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecCC
Q 010771 217 YKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|..|||..|+|+.|.|.|+.++
T Consensus 160 i~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHTTCEETTEECEEEECCCH
T ss_pred HHHhCCCEECCEEEEEEEcCCC
Confidence 9999999999999999998753
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=9.5e-15 Score=138.48 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 135 DPYKTLFVARLS-YETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 135 ~~~~tlfVgnL~-~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+.+||||+||| +.+++++|..+|++||.|.. |+|+.+ .+|||||+|.+.++|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~---------------------v~i~~~-----~~g~afV~f~~~~~A 55 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEK---------------------VKFMKS-----KPGAAMVEMADGYAV 55 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEE---------------------EEECTT-----STTCEEEEESSHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEE---------------------EEEecC-----CCCEEEEEECCHHHH
Confidence 456899999999 89999999999999999999 777654 479999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+.||..|||..|.|+.|.|.+++...
T Consensus 56 ~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 56 DRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp HHHHHHHTTCEETTEECEEEECSCSC
T ss_pred HHHHHHhCCCEECCceEEEEEccCCc
Confidence 99999999999999999999997543
No 171
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7e-15 Score=126.04 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=65.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC---CCCCceEEEEEechhh
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET---NKPRGYAFIEYMHTRD 212 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t---~~~~g~aFVef~~~~~ 212 (501)
..++|||+|||+.+|+++|+++|++||+|. +.++.+..+ |.++|||||+|.+.++
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~----------------------~~~~~~~~~~~~g~~~G~aFV~f~~~~~ 64 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV----------------------VDWPHKAESKSYFPPKGYAFLLFQEESS 64 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC----------------------EECTTSSSSCCCSCTTSEEEECCSSHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE----------------------EEEeecCCCCCCCCcccEEEEEECCHHH
Confidence 457999999999999999999999999997 344555555 7899999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEec
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|++||..|+ .|+|+.|.|..+.
T Consensus 65 a~~Ai~~~~--~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 65 VQALIDACL--EEDGKLYLCVSSP 86 (114)
T ss_dssp HHHHHHHSE--EETTEEEEEECCS
T ss_pred HHHHHHhhh--hcCCcEEEeccCC
Confidence 999999984 4777777776543
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.6e-14 Score=130.21 Aligned_cols=80 Identities=29% Similarity=0.535 Sum_probs=73.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
+||||+|||+.+|+++|.++|+.||.|.. |.|+.+. ++.++|||||+|.+.++|.+|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~---------------------v~i~~~~-~~~~~g~afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIAN---------------------IKIMIDK-NNKNVNYAFVEYHQSHDANIAL 58 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEE---------------------EEEECCC-C-CCEEEEEEEESSHHHHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEE---------------------EEEEECC-CCCCCCEEEEEeCCHHHHHHHH
Confidence 58999999999999999999999999999 8888886 4778999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecCCC
Q 010771 218 KQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
..|+|..|.|+.|.|.++....
T Consensus 59 ~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 59 QTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp HHHTTCEETTEECEEEECCCCC
T ss_pred HHcCCCccCCCeeEEEEcCCCC
Confidence 9999999999999999987543
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.53 E-value=1.3e-14 Score=131.32 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||..+++++|.++|+.||.|.. |.|+.+..++.++|||||+|.+.++|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~---------------------~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ---------------------KNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE---------------------EEEEEcCCCCCcceEEEEEECCHHHH
Confidence 445689999999999999999999999999999 88999988899999999999999999
Q ss_pred HHHHHhcCCceECC--eEEEEEEe
Q 010771 214 KAAYKQADGRKLDG--RRVLVDVE 235 (501)
Q Consensus 214 ~~Al~~l~g~~l~G--r~i~V~~a 235 (501)
.+|+..|||..|.| ++|.|.||
T Consensus 145 ~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 145 QEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999988 99999986
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=1.2e-14 Score=137.37 Aligned_cols=80 Identities=30% Similarity=0.540 Sum_probs=72.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+..++.++|||||+|.+.++|.+|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~A~~A 86 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKS---------------------IDMSWDSVTMKHKGFAFVEYEVPEAAQLA 86 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEE---------------------EEECCC-CC-CCCSEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEE---------------------EEEeecCCCCccCceEEEEeCCHHHHHHH
Confidence 359999999999999999999999999999 88998888999999999999999999999
Q ss_pred HHhcCCceECCeEEEEEEecC
Q 010771 217 YKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|..|+|..|.|+.|.|.++..
T Consensus 87 ~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 87 LEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HHHHSSCCCC-CCCEEECCSC
T ss_pred HHHccCCeeCCeeEEEecCCC
Confidence 999999999999999988754
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=1.9e-14 Score=129.89 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.....+|||+|||..+++++|..+|+.||.|.. |.|+.+..+|.++|||||+|.+.++|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~---------------------~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT---------------------SRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeE---------------------EEEEecCCCCCccceEEEEeCCHHHH
Confidence 345679999999999999999999999999999 88999888899999999999999999
Q ss_pred HHHHHhcCCceECCeE--EEEEEe
Q 010771 214 KAAYKQADGRKLDGRR--VLVDVE 235 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~--i~V~~a 235 (501)
.+|+..|||..|.|+. |.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 888875
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=1.1e-13 Score=136.61 Aligned_cols=78 Identities=26% Similarity=0.405 Sum_probs=70.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||..+++++|+++|+.||.|.. |.|+.+. +|||||+|.+.++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~---------------------v~~~~~~-----~g~afV~f~~~~~ 256 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE---------------------VRLVPGR-----HDIAFVEFDNEVQ 256 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE---------------------EEEecCC-----CcEEEEEeCCHHH
Confidence 3446789999999999999999999999999999 7776442 5899999999999
Q ss_pred HHHHHHhcCCceEC-CeEEEEEEec
Q 010771 213 MKAAYKQADGRKLD-GRRVLVDVER 236 (501)
Q Consensus 213 a~~Al~~l~g~~l~-Gr~i~V~~a~ 236 (501)
|.+||..|||..|. |+.|+|.|++
T Consensus 257 A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 257 AGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999 9999999986
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=2.5e-14 Score=129.61 Aligned_cols=79 Identities=22% Similarity=0.488 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+..+|.++|||||+|.+.++|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~~~~g~~~g~afV~f~~~~~a~~ 60 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTD---------------------LKIMKDPATGRSRGFGFLSFEKPSSVDE 60 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEE---------------------EECCCCTTTSSCCSCEEEEESSTHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEEECCCCCCccceEEEEEccHHHHHH
Confidence 3579999999999999999999999999999 8889998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecC
Q 010771 216 AYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
||. ++..|+|+.|.|.++.+
T Consensus 61 A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 61 VVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp HHH--SCCEETTEECCCEECCC
T ss_pred HHh--cccccCCeEcccccccc
Confidence 997 46899999999998753
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=3.4e-14 Score=129.95 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
..+.++|||+|||+.+++++|+++|+.||.|.. + ..++.++|||||+|.+.++|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~---------------------~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRL---------------------V-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEE---------------------E-----CSSSSCCSEEEEECSSHHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE---------------------e-----cCCCCCceEEEEEECCHHHH
Confidence 345689999999999999999999999998765 3 46789999999999999999
Q ss_pred HHHHHhcCCceECCeEEEEEEecCC
Q 010771 214 KAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.+||..|||..|+|+.|.|.|+.++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999764
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=3.5e-14 Score=136.46 Aligned_cols=85 Identities=21% Similarity=0.422 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEE
Q 010771 128 NDPNVSGDPYKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIE 206 (501)
Q Consensus 128 ~~~~~~~~~~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVe 206 (501)
..|.....+.++|||+|||+ .+++++|.++|+.||.|.. |.|+.+. +|||||+
T Consensus 25 ~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~---------------------v~i~~~~-----~g~afV~ 78 (229)
T 2adc_A 25 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR---------------------VKILFNK-----KENALVQ 78 (229)
T ss_dssp CCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE---------------------EEECCTT-----SCCEEEE
T ss_pred CCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE---------------------EEEEECC-----CCEEEEE
Confidence 34455566789999999999 9999999999999999999 8887653 7899999
Q ss_pred EechhhHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 207 YMHTRDMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 207 f~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|.+.++|++||..|+|..|.|+.|.|.++...
T Consensus 79 F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 79 MADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp ESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 99999999999999999999999999999754
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=4.9e-14 Score=132.33 Aligned_cols=77 Identities=14% Similarity=0.285 Sum_probs=70.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|||+|||+.+|+++|..+|++||.|.. |.|+.+. ++.++|||||+|.+.++|++||
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~---------------------v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~ 167 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLN---------------------IQMRRTL-HKAFKGSIFVVFDSIESAKKFV 167 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEE---------------------EEEEECT-TCCEEEEEEEEESSHHHHHHHH
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEE---------------------EEEEECC-CCCcccEEEEEECCHHHHHHHH
Confidence 69999999999999999999999999999 8888875 5889999999999999999999
Q ss_pred HhcCCceECCeEEEEEEecC
Q 010771 218 KQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~~ 237 (501)
..+ +..|+|+.|.|.|+..
T Consensus 168 ~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 168 ETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HCT-TCEETTEECEEEETTT
T ss_pred HhC-CCeECCEEEEEEEhHH
Confidence 654 5699999999998753
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=8.3e-14 Score=137.57 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 134 GDPYKTLFVARLSYETTESKIK----REFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
..+.++|||+|||+.+|+++|+ ++|+.||.|.. |.|+. ++.++|||||+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~---------------------v~~~~---~~~~~g~afV~f~~ 61 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD---------------------ILVSR---SLKMRGQAFVIFKE 61 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE---------------------EEEcC---CCCcceEEEEEECC
Confidence 3467899999999999999976 89999999998 66654 68899999999999
Q ss_pred hhhHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 210 TRDMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
.++|.+||..|||..|.|+.|.|.|+...
T Consensus 62 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 62 VSSATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred HHHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 99999999999999999999999999653
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=4.1e-14 Score=128.87 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+|+++|+++|+.||.|.. |.|+.+. +|.++|||||+|.+.++|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~---------------------v~~~~~~-~g~~~g~afV~f~~~~~A~~ 151 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEE---------------------CRILRGP-DGLSRGCAFVTFTTRAMAQT 151 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECT-TSCEEEEEEEEESSHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE---------------------EEEEECC-CCCEEEEEEEEECCHHHHHH
Confidence 5679999999999999999999999999999 8888885 58899999999999999999
Q ss_pred HHHhcCCceEC---CeEEEEEEe
Q 010771 216 AYKQADGRKLD---GRRVLVDVE 235 (501)
Q Consensus 216 Al~~l~g~~l~---Gr~i~V~~a 235 (501)
||..|||..|. |++|.|.||
T Consensus 152 A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 152 AIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCcccCCCCCCeEEEec
Confidence 99999998776 499999997
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=2.6e-14 Score=138.10 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEE
Q 010771 135 DPYKTLFVARLSYET---------TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFI 205 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~---------te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFV 205 (501)
...+|||||||+..+ ++++|..+|++||+|.. |.|+. .+|||||
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~---------------------v~v~~------~kG~AFV 184 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR---------------------IRYVE------SKNCGFV 184 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE---------------------EEEEG------GGTEEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE---------------------EEEEC------CCCEEEE
Confidence 456899999999998 79999999999999999 77764 4799999
Q ss_pred EEechhhHHHHHHhcCCceE------------CCeEEEEEEecCCCCC
Q 010771 206 EYMHTRDMKAAYKQADGRKL------------DGRRVLVDVERGRTVP 241 (501)
Q Consensus 206 ef~~~~~a~~Al~~l~g~~l------------~Gr~i~V~~a~~~~~~ 241 (501)
+|.+.++|+.|+..|+|..| .|+.|.|.||...+.+
T Consensus 185 ~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 185 KFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp EESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 99999999999999999999 8999999999875543
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=4e-14 Score=128.94 Aligned_cols=82 Identities=16% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCC--CCCceEEEEEechhhH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETN--KPRGYAFIEYMHTRDM 213 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~--~~~g~aFVef~~~~~a 213 (501)
..++|||+|||+.+|+++|.++|++||+|.. |.|+.+..++ .++|||||+|.+.++|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------------v~i~~~~~~~~~~~~g~afV~f~~~~~A 60 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYE---------------------INVLRDRSQNPPQSKGCCFVTFYTRKAA 60 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEE---------------------EEEEEECSSSSCEEEEEEEEEESSHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEE---------------------EEEEecCCCCCCCcceEEEEEECCHHHH
Confidence 3579999999999999999999999999999 8899888776 8999999999999999
Q ss_pred HHHHHhcCCceEC---CeEEEEEEecCC
Q 010771 214 KAAYKQADGRKLD---GRRVLVDVERGR 238 (501)
Q Consensus 214 ~~Al~~l~g~~l~---Gr~i~V~~a~~~ 238 (501)
++||..|+|..+. +..|.|.++...
T Consensus 61 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (175)
T 3nmr_A 61 LEAQNALHNMKVLPGMHHPIQMKPADSE 88 (175)
T ss_dssp HHHHHHHTTTCCCTTCSSCCEEEECGGG
T ss_pred HHHHHHhcCcEEccCCccceEEcccccc
Confidence 9999999998876 677888877643
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.47 E-value=6.9e-14 Score=138.83 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCC-CCCCCceEEEEEechh
Q 010771 134 GDPYKTLFVARLSYE-TTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKE-TNKPRGYAFIEYMHTR 211 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~-t~~~~g~aFVef~~~~ 211 (501)
..+.++|||+|||+. +++++|.++|+.||.|.. |.|+.+.. |+.++|||||+|.+.+
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~---------------------v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEK---------------------INIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE---------------------EECCSCCC---CCCEEEEEEESSHH
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeE---------------------EEEEecCCcCCCCceEEEEEeCCHH
Confidence 345689999999999 999999999999999999 88888765 6999999999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecCC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
+|.+|| .|||..|+|+.|.|.|+.++
T Consensus 266 ~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 266 SAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999 99999999999999999764
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.2e-13 Score=115.34 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCce
Q 010771 134 GDPYKTLFVARLSYETT-----------ESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGY 202 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~t-----------e~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~ 202 (501)
..+.++|+|.||..... +++|+++|++||.|.. |.| .+. .++||
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~---------------------v~i-~~~---~~~G~ 66 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK---------------------LLL-FDR---HPDGV 66 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE---------------------EEE-ETT---CTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE---------------------EEE-ecC---CCCEE
Confidence 44678999999954332 5899999999999999 744 443 38999
Q ss_pred EEEEEechhhHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 203 AFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 203 aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|||+|.+.++|++||..|||..|+|+.|.|.++.+..
T Consensus 67 afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 67 ASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp EEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 9999999999999999999999999999999997644
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=7.4e-14 Score=127.68 Aligned_cols=83 Identities=19% Similarity=0.362 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 133 SGDPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
...+.++|||+|||+.+|+++|+++|..||.|..+ ++.+..++.++|||||+|.+.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~----------------------~~~~~~~~~~~g~afV~f~~~~~ 66 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL----------------------AVVDVRTGTNRKFGYVDFESAED 66 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC----------------------CCCEEEEETTTTEEEEEESSHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE----------------------EEEECCCCccccEEEEEECCHHH
Confidence 34467899999999999999999999999988651 12223468899999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|.+|| .|+|..|.|+.|.|.++...
T Consensus 67 a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 67 LEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp HHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred HHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 99999 59999999999999998754
No 188
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=1.5e-13 Score=130.10 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCc--ceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 134 GDPYKTLFVARLSYETTESKIKREFESYGPI--KRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~te~~l~~~F~~~G~i--~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
..|.++|||+|||+.+|+++|+++|++||.| .. |.|+.+. +..+|||||+|.+.+
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~---------------------v~~~~~~--~~~~g~gfV~f~~~~ 176 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTS---------------------VKVFSGK--SERSSSGLLEWDSKS 176 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSE---------------------EEECSCC--SSSSEEEEEECSSHH
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEE---------------------EEEEcCC--CCCceEEEEEeCCHH
Confidence 3467899999999999999999999999999 77 7777664 556799999999999
Q ss_pred hHHHHHHhcCCceECCe----EEEEEEe
Q 010771 212 DMKAAYKQADGRKLDGR----RVLVDVE 235 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr----~i~V~~a 235 (501)
+|.+||..|||..|.|. +|.|.|+
T Consensus 177 ~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 177 DALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99999999999999987 5777765
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.43 E-value=3.2e-13 Score=133.50 Aligned_cols=83 Identities=25% Similarity=0.380 Sum_probs=78.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+..+|||+|||+.+|+++|.++|+.||.|.. |.|+.+..+|.++|||||+|.+.++|.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~---------------------~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLER---------------------CFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeE---------------------EEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 4579999999999999999999999999999 8899998899999999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||..|+|..|+|+.|.|.++....
T Consensus 153 A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 153 AKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHhCCCEeCCcEEEEEECCCCC
Confidence 999999999999999999997543
No 190
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=3.5e-13 Score=113.95 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCC--CCCCC--------HHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCC--CCCCc
Q 010771 134 GDPYKTLFVARL--SYETT--------ESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKET--NKPRG 201 (501)
Q Consensus 134 ~~~~~tlfVgnL--~~~~t--------e~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t--~~~~g 201 (501)
+.|+++|.|.|| +..+. +++|+++|++||.|.. |.|+.+..+ +.++|
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~---------------------v~i~~~~~~~~~~~~G 60 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS---------------------IEIPRPVDGVEVPGCG 60 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE---------------------EECCCCBTTBCCTTTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE---------------------EEEeccCCCCCcCCcE
Confidence 346789999998 33333 3789999999999999 778777654 46899
Q ss_pred eEEEEEechhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 202 YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 202 ~aFVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 61 ~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 61 KIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 99999999999999999999999999999999975
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.42 E-value=3.4e-13 Score=133.30 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhh
Q 010771 134 GDPYKTLFVARLSYET-TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRD 212 (501)
Q Consensus 134 ~~~~~tlfVgnL~~~~-te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~ 212 (501)
..+.++|||+|||+.+ ++++|.++|+.||.|.. |.|+.+. +|.++|||||+|.+.++
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~---------------------v~i~~~~-~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTF---------------------CQLACGQ-DGQLKGFAVLEYETAEM 238 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE---------------------EEEEECS-SCCEEEEEEEECSSHHH
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEE---------------------EEEEECC-CCCcccEEEEEeCCHHH
Confidence 3456899999999995 99999999999999999 8888886 78999999999999999
Q ss_pred HHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 213 MKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 213 a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
|.+||..|||..|+|+.|.|.|+.+..
T Consensus 239 A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 239 AEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 999999999999999999999997643
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.40 E-value=1.9e-13 Score=127.69 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=70.5
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 137 YKTLFVARLSY-ETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 137 ~~tlfVgnL~~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
.++|||+|||+ .+++++|.++|+.||.|.. |.|+.+. +|||||+|.+.++|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~---------------------v~i~~~~-----~g~afV~f~~~~~a~~ 56 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQR---------------------VKILFNK-----KENALVQMADGNQAQL 56 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSE---------------------EECSTTC-----SSCCEEECTTTHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEE---------------------EEEEeCC-----CCEEEEEECCHHHHHH
Confidence 47999999999 9999999999999999999 7776553 7899999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
||..|+|..|.|+.|.|.++....
T Consensus 57 A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 57 AMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp HHHHHTTCCCSSCCCEEEECCCCS
T ss_pred HHHHhCCCeecCeEEEEEEecCCC
Confidence 999999999999999999997543
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=5.2e-13 Score=130.87 Aligned_cols=76 Identities=29% Similarity=0.397 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
.+.++|||+|||+.+|+++|..+|+.||.|.. |.|+. .+|||||+|.+.++|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~---------------------v~i~~------~kg~afV~f~~~~~A~ 72 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSE---------------------VFINR------DRGFGFIRLESRTLAE 72 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSE---------------------EEEET------TTTEEEEECSSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE---------------------EEEeC------CCcEEEEEECCHHHHH
Confidence 45579999999999999999999999999999 77743 4799999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+||..|+|..|.|+.|.|.++..
T Consensus 73 ~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 73 IAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp HHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHcCCcEECCceeEeeeccc
Confidence 99999999999999999999864
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=4.4e-13 Score=125.20 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+.++|||+|||..+++++|.++|+.|| .|.. |.|+.+ .+|||||+|.+.++|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~---------------------v~i~~~-----~~g~afV~f~~~~~A 171 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG---------------------FKFFQK-----DRKMALIQMGSVEEA 171 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE---------------------EEESST-----TSSCEEEECSSHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE---------------------EEEEeC-----CCcEEEEEeCCHHHH
Confidence 4678999999999999999999999999 9998 777543 379999999999999
Q ss_pred HHHHHhcCCceEC-CeEEEEEEecC
Q 010771 214 KAAYKQADGRKLD-GRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~-Gr~i~V~~a~~ 237 (501)
.+||..|||..|+ |+.|.|.|+++
T Consensus 172 ~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 172 VQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred HHHHHHhcCCccCCCCeEEEEeecc
Confidence 9999999999999 99999999975
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.38 E-value=1e-12 Score=122.17 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
..++|||+|||+.+|+++|.++|+.||.|..+.+.. ...+..+.+ +.++|||||+|.+.++|++
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~----------~~~v~~~~~------~~~~g~afV~F~~~~~A~~ 66 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP----------GNPVLAVQI------NQDKNFAFLEFRSVDETTQ 66 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSS----------SCSEEEEEE------ETTTTEEEEEESCSHHHHH
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCC----------CCceEEeEe------cCCCCEEEEEeCCHHHHHH
Confidence 457999999999999999999999996554311000 000001333 5678999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|| .|||..|.|+.|.|.++...
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCC
T ss_pred HH-HhcCCEEcCceEEEeCCCCC
Confidence 99 89999999999999998654
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.1e-12 Score=119.26 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+.++|||+|||+.+|+++|+++|++||.|..+.+. ....+..+.+ +.++|||||+|.+.++|.+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~----------~~~~v~~~~~------~~~~g~afV~f~~~~~A~~ 66 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQA----------PGNPVLAVQI------NQDKNFAFLEFRSVDETTQ 66 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSS----------SSCSEEEEEE------ETTTTEEEEEESSHHHHHH
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccC----------CCCceeeeEe------cCCCCEEEEEeCCHHHHHH
Confidence 35799999999999999999999999533221000 0000001433 4568999999999999999
Q ss_pred HHHhcCCceECCeEEEEEEecCC
Q 010771 216 AYKQADGRKLDGRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l~g~~l~Gr~i~V~~a~~~ 238 (501)
|| .|+|..|.|+.|.|.++...
T Consensus 67 A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 67 AM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp HG-GGTTCEETTEECEEECCSSC
T ss_pred HH-HhCCcEecCceeeecCCccc
Confidence 99 89999999999999987643
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.37 E-value=9e-13 Score=126.57 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhH
Q 010771 135 DPYKTLFVARLSYETTESKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDM 213 (501)
Q Consensus 135 ~~~~tlfVgnL~~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a 213 (501)
.+.++|||+|||..+++++|+++|+.|| .|.. |.|+.. .+|||||+|.+.++|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~---------------------v~i~~~-----~~g~afV~f~~~~~A 202 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG---------------------FKFFQK-----DRKMALIQMGSVEEA 202 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE---------------------EEECSS-----STTCEEEEESSHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE---------------------EEEEEC-----CCcEEEEEECCHHHH
Confidence 4578999999999999999999999999 9998 766532 478999999999999
Q ss_pred HHHHHhcCCceEC-CeEEEEEEecC
Q 010771 214 KAAYKQADGRKLD-GRRVLVDVERG 237 (501)
Q Consensus 214 ~~Al~~l~g~~l~-Gr~i~V~~a~~ 237 (501)
.+||..|+|..|+ |+.|.|.|+++
T Consensus 203 ~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 203 VQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHHHCCCccCCCCeEEEEEecC
Confidence 9999999999999 99999999975
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=2.1e-13 Score=115.05 Aligned_cols=73 Identities=12% Similarity=0.365 Sum_probs=63.9
Q ss_pred EEcCCCCCCCHHHHHHHH------------HhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEe
Q 010771 141 FVARLSYETTESKIKREF------------ESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYM 208 (501)
Q Consensus 141 fVgnL~~~~te~~l~~~F------------~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~ 208 (501)
.+.||++.+++++|.++| ++||.|.. |.|+.+. ++.++|||||+|.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~---------------------v~i~~~~-~~~~~G~~fV~f~ 76 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE---------------------MNVCDNL-GDHLVGNVYVKFR 76 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE---------------------EEECCSS-SSSSEEEEEEEES
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE---------------------EEEEeCC-CCCccEEEEEEEC
Confidence 367888888888777666 99999999 8887775 4789999999999
Q ss_pred chhhHHHHHHhcCCceECCeEEEEEEe
Q 010771 209 HTRDMKAAYKQADGRKLDGRRVLVDVE 235 (501)
Q Consensus 209 ~~~~a~~Al~~l~g~~l~Gr~i~V~~a 235 (501)
+.++|.+|+..|||..|+|+.|.|+|+
T Consensus 77 ~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 77 REEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp CHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred CHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 999999999999999999999999986
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1e-12 Score=113.48 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCC----CCCCCceEEEE
Q 010771 136 PYKTLFVARLSY--ET---TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKE----TNKPRGYAFIE 206 (501)
Q Consensus 136 ~~~tlfVgnL~~--~~---te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~----t~~~~g~aFVe 206 (501)
++++|+|.||-. ++ .+++|+++|++||.|.. |.|+.+.. ++.++|||||+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~---------------------v~I~~~~~~~~~~~~~~G~~FV~ 77 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNR---------------------VIIYQEKQGEEEDAEIIVKIFVE 77 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEE---------------------EEEEEEEESSSTTCEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeE---------------------EEEeecCCCcccCCcceEEEEEE
Confidence 467999999842 22 36899999999999999 77777754 45678999999
Q ss_pred EechhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 207 YMHTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 207 f~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 78 F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 78 FSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 999999999999999999999999999975
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.35 E-value=1.3e-12 Score=129.61 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYG-PIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMK 214 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~ 214 (501)
..++|||+|||+.+++++|.++|+.|| .|.. |.|+.+.. +.++|||||+|.+.++|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~---------------------v~i~~~~~-~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALS---------------------IRLPSLRF-NTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCE---------------------EECC--------CCEEEEECSSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEE---------------------EEEEeCCC-CCcceEEEEEECCHHHHH
Confidence 467999999999999999999999999 9999 77777754 788999999999999999
Q ss_pred HHHHhcCCceECCeEEEEEEecCCC
Q 010771 215 AAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 215 ~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
+||..|+|..|.|+.|.|.|+.+..
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCc
Confidence 9999999999999999999987543
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.35 E-value=1.2e-12 Score=128.28 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHH
Q 010771 136 PYKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~ 215 (501)
+..+|||+|||+.+|+++|..+|+.||.|.. |.|+.+ .+|.++|||||+|.+.++|.+
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~---------------------v~i~~~-~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEK---------------------AVVVVD-DRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEE---------------------EEEEEE-TTSCEEEEEEEEESSHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEE---------------------EEeeeC-CCCCcCcEEEEEeCCHHHHHH
Confidence 4679999999999999999999999999999 888888 589999999999999999999
Q ss_pred HHHhc-CCceEC---CeEEEEEEecCC
Q 010771 216 AYKQA-DGRKLD---GRRVLVDVERGR 238 (501)
Q Consensus 216 Al~~l-~g~~l~---Gr~i~V~~a~~~ 238 (501)
||..| +|..+. |++|.|.++...
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999 455555 999999998753
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=102.87 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 137 YKTLFVARLS-------YETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 137 ~~tlfVgnL~-------~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
...|.|.-.. ..+++++|+.+|++||.|.. |.|+ +.++|||||+|.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~---------------------v~i~-----~~~rGfaFVeF~~ 63 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN---------------------LVLS-----SKKPGTAVVEFAT 63 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE---------------------EEEE-----SSSSSEEEEEESC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE---------------------EEEc-----cCCCCEEEEEECC
Confidence 4466665443 46899999999999999999 7665 4689999999999
Q ss_pred hhhHHHHHHhcCCceECCeEEEEEEecCCC
Q 010771 210 TRDMKAAYKQADGRKLDGRRVLVDVERGRT 239 (501)
Q Consensus 210 ~~~a~~Al~~l~g~~l~Gr~i~V~~a~~~~ 239 (501)
.++|+.||..+++ +.|+.|+|.|+...+
T Consensus 64 ~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 64 VKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 9999999987655 689999999987654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=5.5e-12 Score=128.04 Aligned_cols=81 Identities=19% Similarity=0.346 Sum_probs=67.0
Q ss_pred CCCCCCCCCCEEEEcC--CCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEE
Q 010771 129 DPNVSGDPYKTLFVAR--LSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIE 206 (501)
Q Consensus 129 ~~~~~~~~~~tlfVgn--L~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVe 206 (501)
+-.....|+++||||| |++.+|+++|+++|++||+|.. |.|+. .+|||||+
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~---------------------v~~~~------~kgfaFV~ 62 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA---------------------LLMPP------NKPYSFAR 62 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE---------------------EECCT------TCSEEEEE
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE---------------------EEEeC------CCCEEEEE
Confidence 3344567889999999 5789999999999999999988 65532 57999999
Q ss_pred EechhhHHHHHHhcCCceEC---Ce--EEEEEEec
Q 010771 207 YMHTRDMKAAYKQADGRKLD---GR--RVLVDVER 236 (501)
Q Consensus 207 f~~~~~a~~Al~~l~g~~l~---Gr--~i~V~~a~ 236 (501)
|.+.++|++||..|||..|. |+ .|.|.++.
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 63 YRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp ESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred ECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 99999999999999999883 44 56666653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=6.3e-11 Score=101.52 Aligned_cols=76 Identities=11% Similarity=0.183 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEE
Q 010771 136 PYKTLFVARLSYET----------TESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFI 205 (501)
Q Consensus 136 ~~~tlfVgnL~~~~----------te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFV 205 (501)
++++|.|.||=... .+++|+++|++||.|.. |.|..+ ..+|||||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~---------------------v~i~~~----~~~G~~fV 60 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH---------------------IYVDKN----SAQGNVYV 60 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE---------------------EEECTT----CTTCCEEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE---------------------EEEecC----CCcEEEEE
Confidence 56789999973321 13688999999999998 766543 25899999
Q ss_pred EEechhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 206 EYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 206 ef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 61 ~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 61 KCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 9999999999999999999999999999975
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.2e-10 Score=92.95 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=63.4
Q ss_pred CCCCCCEEEEcCCC----CCCCH----HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEE
Q 010771 133 SGDPYKTLFVARLS----YETTE----SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAF 204 (501)
Q Consensus 133 ~~~~~~tlfVgnL~----~~~te----~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aF 204 (501)
.++|.-||+|.-++ .++.. .+|.+.|.+||.|.. |+|+.+. +|
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~---------------------vr~~~d~--------~f 53 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVIL---------------------IRFVEDK--------MW 53 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEE---------------------EEECSSS--------EE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEE---------------------EEEecCC--------EE
Confidence 35677799998877 23434 678999999999998 8887653 89
Q ss_pred EEEechhhHHHHHHhcCCceECCeEEEEEEecC
Q 010771 205 IEYMHTRDMKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 205 Vef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
|+|.+.++|.+||. |||..|+|+.|+|.++.+
T Consensus 54 VtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 54 VTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp EEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred EEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 99999999999996 999999999999999864
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=2.7e-10 Score=98.12 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCCCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEec
Q 010771 131 NVSGDPYKTLFVARLSYE-TTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMH 209 (501)
Q Consensus 131 ~~~~~~~~tlfVgnL~~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~ 209 (501)
...-.+...|||+||++. ++.++|+++|++||+|.+ |.|+.+.. .|||.|.+
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~---------------------Vd~~~g~~------tgfVrf~~ 64 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW---------------------IDFVRGAK------EGIILFKE 64 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE---------------------EECCTTCS------EEEEEESS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE---------------------EEEecCCC------EEEEEECC
Confidence 344556789999999999 999999999999999999 77766543 69999999
Q ss_pred -hhhHHHHHHhc--CCceECCeEEEEEEec
Q 010771 210 -TRDMKAAYKQA--DGRKLDGRRVLVDVER 236 (501)
Q Consensus 210 -~~~a~~Al~~l--~g~~l~Gr~i~V~~a~ 236 (501)
..+|..|+..| +|..|.|..++|++..
T Consensus 65 ~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 65 KAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred ChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 79999999999 4788999999988754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.1e-09 Score=89.29 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=62.5
Q ss_pred CCCCCCEEEEcCCCCC-----CCH----HHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceE
Q 010771 133 SGDPYKTLFVARLSYE-----TTE----SKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYA 203 (501)
Q Consensus 133 ~~~~~~tlfVgnL~~~-----~te----~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~a 203 (501)
.++|.-||+|.-++.. +.. .+|.+.|..||.|.. |+|+.+. +
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil---------------------vr~v~d~--------~ 61 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL---------------------VRINQGQ--------M 61 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE---------------------EEEETTE--------E
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE---------------------EEEecCc--------E
Confidence 4667789999988742 323 568999999999988 8887764 9
Q ss_pred EEEEechhhHHHHHHhcCCceECCeEEEEEEec
Q 010771 204 FIEYMHTRDMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 204 FVef~~~~~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
||+|.+.++|.+||. |||..|+|+.|+|.+-.
T Consensus 62 fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 62 LVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred EEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 999999999999997 99999999999998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=9.4e-09 Score=97.88 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeec----CCCCCCCceEEEEEechhhHHHHHHhcCCce
Q 010771 149 TTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTD----KETNKPRGYAFIEYMHTRDMKAAYKQADGRK 224 (501)
Q Consensus 149 ~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d----~~t~~~~g~aFVef~~~~~a~~Al~~l~g~~ 224 (501)
-.+++|.+.|++||.|.. |.|+.+ ..++.++||+||+|.+.++|.+||..|||..
T Consensus 141 e~~~dl~~e~~~~G~v~~---------------------~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNR---------------------VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp THHHHHHHHHTTTSCEEE---------------------EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHccCCeEE---------------------EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 456889999999999999 666644 3456899999999999999999999999999
Q ss_pred ECCeEEEEEEec
Q 010771 225 LDGRRVLVDVER 236 (501)
Q Consensus 225 l~Gr~i~V~~a~ 236 (501)
|+|+.|.|.+..
T Consensus 200 ~~gr~i~~~~~~ 211 (222)
T 3dxb_A 200 FAGRKVVAEVYD 211 (222)
T ss_dssp SSSSBCEEEECC
T ss_pred ECCeEEEEEEcC
Confidence 999999999974
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=5.8e-06 Score=68.74 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=63.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc-----CCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 137 YKTLFVARLSYETTESKIKREFESY-----GPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~-----G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
.+||-|-|||.+|+...|+.+++.+ |.|.. |.|+.|- +-|+|+|.+..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K---------------------I~L~pDH------~GAivef~d~~ 73 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK---------------------ILLVSDF------NGAIIIFRDSK 73 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE---------------------EEEETTT------TEEEEECSCHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE---------------------EEEecCC------CceEEEEccch
Confidence 4689999999999999999999999 88887 7777663 56999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEE
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDV 234 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~ 234 (501)
.|-+|.-+|+|.+|.|++|+|.-
T Consensus 74 ~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 74 FAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHHHHSSEEETTEEEEEEC
T ss_pred hhHHHHhhcCCeeecCeEEEecC
Confidence 99999989999999999999863
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00024 Score=58.82 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=61.0
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 137 YKTLFVARLSYET-T----ESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 137 ~~tlfVgnL~~~~-t----e~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
.+||+|.||+.+| . .+.|+.+|..|+++.. ..+... -.=..|.|.+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~t---------------------F~~lkS------FRRirv~F~~~~ 57 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTT---------------------FQYFKS------FKRVRINFSNPL 57 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCE---------------------EEEETT------TTEEEEECSSTT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcc---------------------eeecCc------ceEEEEEeCChH
Confidence 4689999998865 2 2578999999999887 544332 224679999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEecC
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVERG 237 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~~ 237 (501)
+|.+|-..|++..+.|..|+|.++.+
T Consensus 58 ~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 58 SAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHHHhccceecCceeEEEecCC
Confidence 99999999999999999999999974
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.09 E-value=0.0015 Score=53.26 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=44.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..++| ++|.++.-.+|.++|+.||.|. |.++-| .-|||.|.+.+.|..|+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~----------------------I~WidD-------TsAlvvf~~~~~a~~al 66 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ----------------------ISWIDD-------TSAFVSLSQPEQVQIAV 66 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC----------------------CEEEET-------TEEEEECSCHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE----------------------EEEEcC-------CeEEEEecCHHHHHHHH
Confidence 34555 9999999999999999999765 666655 37999999999999999
Q ss_pred Hhc
Q 010771 218 KQA 220 (501)
Q Consensus 218 ~~l 220 (501)
..+
T Consensus 67 ~~i 69 (100)
T 1whv_A 67 NTS 69 (100)
T ss_dssp HHH
T ss_pred Hhc
Confidence 865
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.86 E-value=0.0058 Score=49.46 Aligned_cols=78 Identities=12% Similarity=0.191 Sum_probs=58.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCC--CCceEEEEEechhhHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNK--PRGYAFIEYMHTRDMKA 215 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~--~~g~aFVef~~~~~a~~ 215 (501)
++|.|-+||+.+|++++.+.+..+..+.. ...+....+.. .-.-|||.|.+.+++..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~---------------------~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~ 60 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY---------------------FEFFSNDTSLYPHMYARAYINFKNQEDIIL 60 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEE---------------------EEEEESCCSSTTCCCEEEEEEESSSHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceE---------------------EEEeCCccCCCCCcceEEEEEeCCHHHHHH
Confidence 47999999999999999999998876554 44444333322 23469999999999999
Q ss_pred HHHhcCCceECC-----eEEEEEEec
Q 010771 216 AYKQADGRKLDG-----RRVLVDVER 236 (501)
Q Consensus 216 Al~~l~g~~l~G-----r~i~V~~a~ 236 (501)
....++|..+-+ .+..|++|-
T Consensus 61 f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 61 FRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp HHHHHTTCEEECTTCCEEECEEEECS
T ss_pred HHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 999999998732 233566653
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.0015 Score=53.29 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=45.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHHH
Q 010771 139 TLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYK 218 (501)
Q Consensus 139 tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~ 218 (501)
-||+-++|.++.-.+|..+|+.||.|. |.++-| .-|||.|.+.+.|..|+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~----------------------I~WidD-------TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQ----------------------ISWIDD-------TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEE----------------------EEEEET-------TEEEEEEEEECHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEE----------------------EEEEcC-------CeEEEEecCHHHHHHHHH
Confidence 355559999999999999999999654 666655 379999999999999998
Q ss_pred hcC
Q 010771 219 QAD 221 (501)
Q Consensus 219 ~l~ 221 (501)
.+.
T Consensus 58 ~i~ 60 (101)
T 3ctr_A 58 TSK 60 (101)
T ss_dssp HHT
T ss_pred hcc
Confidence 663
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.53 E-value=0.011 Score=50.03 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=55.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 137 YKTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
...|.|-++|... ...|..+|++||.|.. ... .....+-.|.|.+..+|++|
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~---------------------~~~------~~~~NWihI~Y~s~~~A~rA 75 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILK---------------------HVM------SNTGNWMHIRYQSKLQARKA 75 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEE---------------------EEE------CSSSSEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEE---------------------ecc------CCCCCeEEEEeCCHHHHHHH
Confidence 3579999999875 5778999999999987 433 12346899999999999999
Q ss_pred HHhcCCceECC-eEEEEEEe
Q 010771 217 YKQADGRKLDG-RRVLVDVE 235 (501)
Q Consensus 217 l~~l~g~~l~G-r~i~V~~a 235 (501)
| ..||..|+| -.|=|.+.
T Consensus 76 L-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 76 L-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp H-TTTTCEETTTEECEEEEC
T ss_pred H-HhCCeEecCCEEEEEEEC
Confidence 9 579999985 55566664
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.0089 Score=49.19 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-----cCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechh
Q 010771 137 YKTLFVARLSYETTESKIKREFES-----YGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTR 211 (501)
Q Consensus 137 ~~tlfVgnL~~~~te~~l~~~F~~-----~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~ 211 (501)
.++|.|.|||..+.++.|.-+|++ -|+|.. |... + +-|+|+|.+..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~---------------------v~~~-----~---~~AvItF~d~~ 58 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS---------------------WQRL-----G---CGGVLTFREPA 58 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE---------------------EEEE-----T---TEEEEEESSHH
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE---------------------EEEc-----C---CcEEEEEcChH
Confidence 469999999999999999999987 257776 5442 1 67999999999
Q ss_pred hHHHHHHhcCCceECCeEEEEEEec
Q 010771 212 DMKAAYKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 212 ~a~~Al~~l~g~~l~Gr~i~V~~a~ 236 (501)
.|+..|+ -.-+.|.|..|.|....
T Consensus 59 va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 59 DAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp HHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred HHHHHhc-CCcceecCeEEEEEcCC
Confidence 9999984 34788899999987644
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.61 E-value=0.015 Score=47.39 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=51.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
-.|.|..||+.+|++++.+.+..+-++. ++. |..+.... ....-.-|||.|.+.+++....
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d--~~~-------fv~G~~s~----------~~~~~SRAYI~F~~~edv~~F~ 70 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHD--YFE-------FFAADLSL----------YPHLYSRAYINFRNPDDILLFR 70 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEE--ECC-------CCCCCSSS----------CCSCCCCCEEEESCHHHHHHHH
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccc--eEE-------EeCCccCC----------CCCcceEEEEEeCCHHHHHHHH
Confidence 3699999999999998776666543332 211 11111110 0112246999999999999999
Q ss_pred HhcCCceECC-----eEEEEEEe
Q 010771 218 KQADGRKLDG-----RRVLVDVE 235 (501)
Q Consensus 218 ~~l~g~~l~G-----r~i~V~~a 235 (501)
+.++|..+-+ -+..|++|
T Consensus 71 ~~f~g~~F~D~kg~~~~a~VE~A 93 (97)
T 2l08_A 71 DRFDGYIFLDSKGLEYPAVVEFA 93 (97)
T ss_dssp HHSTTEEEECTTCCEEEEEEEEC
T ss_pred HHcCCcEEEeCCCCEeeeEEEec
Confidence 9999998732 24456665
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.13 E-value=0.032 Score=47.97 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=54.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCC-CCCceEEEEEechhhHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETN-KPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~-~~~g~aFVef~~~~~a~~A 216 (501)
..|.|-+.|...+ ..|..+|++||.|.+-.-+..... . ..+...+.. +... ...++..|+|.+..+|.+|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~--~----~~~~~~~~k--~yP~f~g~NWikItYds~~~A~rA 78 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQ--A----MTVGLQDRQ--FVPIFSGNSWTKITYDNPASAVDA 78 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-------------------CCCCCEETTEEEEEBSSHHHHHHH
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeecccccccc--c----ccccccccc--ccCccCCCcEEEEEcCCHHHHHHH
Confidence 4688889976555 568889999999987110000000 0 000000000 0001 1245789999999999999
Q ss_pred HHhcCCceECCeEEEEEEec
Q 010771 217 YKQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 217 l~~l~g~~l~Gr~i~V~~a~ 236 (501)
| ..||..|+|.-|=|.+..
T Consensus 79 L-~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 79 L-LENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp H-TTTTCEETTEECEEEECC
T ss_pred H-HhCCeEeCcEEEEEEECC
Confidence 9 579999999877777654
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.40 E-value=0.022 Score=59.52 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=39.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
++|||. .|..+++.+|.++|++||+|.. +.+..+ ...||.|||.+.++|..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~---------------------~~~~~~-----~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINN---------------------HFFYES-----FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCC---------------------EEEECS-----SSEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcce---------------------EEEEcc-----CCeEEEEEeCCHHHHHHHH
Confidence 489997 7889999999999999999998 655433 2369999999999999776
Q ss_pred H
Q 010771 218 K 218 (501)
Q Consensus 218 ~ 218 (501)
.
T Consensus 107 ~ 107 (464)
T 3pq1_A 107 N 107 (464)
T ss_dssp S
T ss_pred h
Confidence 4
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.99 E-value=0.022 Score=50.26 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=28.7
Q ss_pred EEEeecCCCCCCCceEEEEEechhhHHHHHHhcCCc
Q 010771 188 VRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGR 223 (501)
Q Consensus 188 v~l~~d~~t~~~~g~aFVef~~~~~a~~Al~~l~g~ 223 (501)
++|+.+. ..++|||||+|.+.++|++||..+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 6777765 368999999999999999999887754
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.89 E-value=0.017 Score=50.72 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=37.5
Q ss_pred CCCCCceEEEEEechhhHHHHHHhc-CCceECCeEEEEEEecC
Q 010771 196 TNKPRGYAFIEYMHTRDMKAAYKQA-DGRKLDGRRVLVDVERG 237 (501)
Q Consensus 196 t~~~~g~aFVef~~~~~a~~Al~~l-~g~~l~Gr~i~V~~a~~ 237 (501)
....+|+++|+|.+.++|++||..| ||..|+| .|.|+++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567999999999999999999999 9999999 999998764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.49 E-value=1.5 Score=46.30 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=43.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
..++|+ +|..+...+|.++|+.||.|. |.++-+ ..|||.|.+.+.|..|+
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~----------------------V~widd-------t~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQ----------------------ISWIDD-------TSAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCE----------------------EEECSS-------SEEEEECSCHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEE----------------------EEEEcC-------CeEEEEECCHHHHHHHH
Confidence 456665 899999999999999999653 555433 46999999999999999
Q ss_pred HhcC
Q 010771 218 KQAD 221 (501)
Q Consensus 218 ~~l~ 221 (501)
..++
T Consensus 491 ~~~~ 494 (507)
T 3d45_A 491 NTSK 494 (507)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=78.46 E-value=3 Score=31.69 Aligned_cols=73 Identities=7% Similarity=0.105 Sum_probs=44.5
Q ss_pred EEEEcC-CCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 139 TLFVAR-LSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 139 tlfVgn-L~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
||||.. --..+...+|..++..-+.|..-.| -.|.| ...|.||+-.. ..+..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~I----------------G~I~i--------~d~~s~v~v~~-~~~~~~~ 56 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDI----------------GIITI--------MDNASYVEILN-GKGPHVL 56 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGE----------------EEEEE--------CSSCEEEEECT-TCHHHHH
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhc----------------cEEEE--------eCCcEEEEECH-HHHHHHH
Confidence 577742 2335677888888876555543111 11444 23589999876 4678899
Q ss_pred HhcCCceECCeEEEEEEec
Q 010771 218 KQADGRKLDGRRVLVDVER 236 (501)
Q Consensus 218 ~~l~g~~l~Gr~i~V~~a~ 236 (501)
..|++..+.|+.|.|..+.
T Consensus 57 ~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 57 KVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp HHHTTCCC---CCCEEECC
T ss_pred HHhccccCcCceEEEEECC
Confidence 9999999999999998764
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=49.26 E-value=3.6 Score=33.77 Aligned_cols=18 Identities=6% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCCCCCHHH
Q 010771 136 PYKTLFVARLSYETTESK 153 (501)
Q Consensus 136 ~~~tlfVgnL~~~~te~~ 153 (501)
..++|||+|||+.+|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 346799999999999863
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.64 E-value=25 Score=31.39 Aligned_cols=55 Identities=18% Similarity=0.365 Sum_probs=37.9
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--HhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEE
Q 010771 139 TLFVARLSY-E--------TTESKIKREF--ESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEY 207 (501)
Q Consensus 139 tlfVgnL~~-~--------~te~~l~~~F--~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef 207 (501)
++.|.|+|. . .....|.+.| ..|.++. |..+.+. .-..|+|.|+|
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k----------------------v~~l~~~--~Gh~g~aIv~F 69 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR----------------------VRPLWNY--LGHSGTAIVEF 69 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE----------------------EEEEECS--SBEEEEEEEEC
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce----------------------eEecccC--CCCceeEEEEe
Confidence 678889987 2 3347899977 8999886 4555543 33668999999
Q ss_pred ech-hhHHHHH
Q 010771 208 MHT-RDMKAAY 217 (501)
Q Consensus 208 ~~~-~~a~~Al 217 (501)
..- .-...|+
T Consensus 70 ~~dw~Gf~~A~ 80 (172)
T 4e8u_A 70 NKDWNGLHNGL 80 (172)
T ss_dssp CSSHHHHHHHH
T ss_pred cCChHHHHHHH
Confidence 854 3344454
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=27.67 E-value=1.1e+02 Score=21.92 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=41.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHHH
Q 010771 138 KTLFVARLSYETTESKIKREFESYGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAAY 217 (501)
Q Consensus 138 ~tlfVgnL~~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~Al 217 (501)
.+|.|.+|.-......|...+.. ..|.. +.+ ....+-+.|+|.+.+.+..||
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~---------------------~~v------~~~~~~~~v~~~~~~~i~~~i 58 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKV---------------------EKV------DLNEAVVAGNKEDVDKYIKAV 58 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEE---------------------EEE------CSSEEEEEEEGGGHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEE---------------------EEE------EccCCEEEEEECCHHHHHHHH
Confidence 46889999988888999999998 77776 444 223356777777667777888
Q ss_pred HhcCCc
Q 010771 218 KQADGR 223 (501)
Q Consensus 218 ~~l~g~ 223 (501)
..+ |+
T Consensus 59 ~~~-Gy 63 (73)
T 3fry_A 59 EAA-GY 63 (73)
T ss_dssp HHT-TC
T ss_pred HHc-CC
Confidence 653 44
No 226
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.85 E-value=4.7 Score=35.24 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.5
Q ss_pred CCCCceEEEEEe
Q 010771 197 NKPRGYAFIEYM 208 (501)
Q Consensus 197 ~~~~g~aFVef~ 208 (501)
+..+|||||+..
T Consensus 18 n~~kGfGFI~~~ 29 (148)
T 3ts2_A 18 NVRMGFGFLSMT 29 (148)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCeeEEeeC
Confidence 346899999976
No 227
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.60 E-value=1.2e+02 Score=24.81 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHh-cCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 147 YETTESKIKREFES-YGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 147 ~~~te~~l~~~F~~-~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.+++..+|++.+.+ |+.-..+.|. ..|.+....|.+.|||.| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv-----------------~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVI-----------------QYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEE-----------------EEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEE-----------------EeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35678888877765 5543331110 233344444667777766 7777766643
No 228
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.52 E-value=96 Score=25.00 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHh-cCCcceeeecCCCCCCCCCCCCCCCceEEEeecCCCCCCCceEEEEEechhhHHHH
Q 010771 147 YETTESKIKREFES-YGPIKRLICNSCNGGDSSRDGKPCDEKVRLVTDKETNKPRGYAFIEYMHTRDMKAA 216 (501)
Q Consensus 147 ~~~te~~l~~~F~~-~G~i~~~~~~~~~~~~~~~~~~~~~~~v~l~~d~~t~~~~g~aFVef~~~~~a~~A 216 (501)
.+++..+|++.+.+ |+.-..+.|. ..|.+....|.+.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv-----------------~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVI-----------------QRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEE-----------------EEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEE-----------------EeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788888887765 5533221110 234444445667777766 7776666544
Done!