Query 010772
Match_columns 501
No_of_seqs 193 out of 1728
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 8.4E-68 2.9E-72 559.2 29.8 380 22-462 2-412 (429)
2 3qe7_A Uracil permease; uracil 60.8 1.2E+02 0.0042 31.1 14.0 67 74-141 263-337 (429)
3 3hd6_A Ammonium transporter RH 19.1 60 0.0021 34.2 3.1 39 439-477 408-446 (490)
4 3o7q_A L-fucose-proton symport 13.0 4.9E+02 0.017 25.0 8.0 37 54-90 280-317 (438)
5 1pw4_A Glycerol-3-phosphate tr 9.8 1.1E+03 0.037 22.4 12.3 37 54-90 274-310 (451)
6 1bts_A BAND 3 anion transport 8.6 64 0.0022 19.8 -0.3 23 292-314 3-25 (26)
7 4ev6_A Magnesium transport pro 6.9 3.8E+02 0.013 26.0 4.4 38 82-119 290-331 (339)
8 3o7q_A L-fucose-proton symport 6.4 1.5E+03 0.051 21.3 10.5 36 55-91 49-84 (438)
9 3b9w_A Ammonium transporter fa 6.0 2.9E+02 0.01 28.2 2.9 31 441-475 333-363 (407)
10 2b2h_A AMT-1, ammonium transpo 5.9 2.2E+02 0.0075 29.0 2.0 35 440-474 351-385 (399)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=8.4e-68 Score=559.24 Aligned_cols=380 Identities=23% Similarity=0.361 Sum_probs=336.5
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHhhceeehhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcc---
Q 010772 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPA--- 97 (501)
Q Consensus 22 ~~~~y~~~d~pp~~~~~~~GlQh~l~m~~~~i~~Plil~~a~gl~~~~~~~li~~~ll~sGi~Tllq~~~-G~rlPi--- 97 (501)
.+..|++|||||+++++++|+||+++|+++++++|+++ |+|++ ++++++|++|++|+++ |+|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~~-------~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINPA-------TVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCHH-------HHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCHH-------HHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 45789999999999999999999999999999999996 78873 7999999999999987 899997
Q ss_pred ---cc--------cccHHHHHHHHHHHHHHHHHHHhh--hhH-HHHHHhcCcchHHHHHHHHHHHhhHhhcCCcc-----
Q 010772 98 ---KF--------KRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA----- 158 (501)
Q Consensus 98 ---~~--------~~~~~~~~Ga~ivaGli~~llg~~--gl~-~~l~~~fpp~V~G~~v~lIGlsl~~~~~~~~~----- 158 (501)
+| .++|++++|+++++|+++++++++ |+. +|++|+|||+|+|.++++||+++.+.++++.+
T Consensus 71 ~sfafi~~~~~i~~~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~ 150 (429)
T 3qe7_A 71 SSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAE 150 (429)
T ss_dssp ECGGGHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBT
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCC
Confidence 22 168999999999999999999987 543 69999999999999999999999998765432
Q ss_pred ------chhhhHHHHHHHHHHHHHhhhhhhcccccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccCcCCc
Q 010772 159 ------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGL 232 (501)
Q Consensus 159 ------~~~~v~~~~l~l~i~l~~~~~~~~~~~~~~l~~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~ 232 (501)
.++.+++.+++++++++++.| +++|++++|+|+++||++++.+|.. |++.
T Consensus 151 ~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~~----------------d~~~- 206 (429)
T 3qe7_A 151 GQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGIV----------------DTTP- 206 (429)
T ss_dssp TBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT----------------TSSH-
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcCC----------------Cccc-
Confidence 246688888888877766554 4688999999999999999999853 4443
Q ss_pred cCCCCcccccccccccccccCHHHHHHHHHHHHHHHHHhHhHHHHHHhHhcCCCCCCcCCCcceehhhhHHHHhhhcCCC
Q 010772 233 IDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTV 312 (501)
Q Consensus 233 v~~ap~~~~P~p~~~g~P~f~~~~il~~~~i~lv~~~esig~~~a~~~~~~~~~~~~~~i~r~l~adGl~~ilaglfG~~ 312 (501)
+.++||+++|. |+.|+||++.++.++++++++++|++|++.++++..+++..+++++||++.+||++|+++|+||++
T Consensus 207 v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~ 283 (429)
T 3qe7_A 207 IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGST 283 (429)
T ss_dssp HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCC
Confidence 56789999995 567999999999999999999999999999999999866556788999999999999999999999
Q ss_pred CCcccccchhhHHHhhccCchHHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccce--eeccCCC
Q 010772 313 NGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL--QFCNLNS 390 (501)
Q Consensus 313 p~tt~s~~n~g~i~~Tgv~SR~~~~~ag~~lillg~~pk~~~lia~IP~~V~ggvli~~f~~i~~~Gi~~l--~~v~~~~ 390 (501)
|.|+|+ ||+|+++.||++||++...+|+++++++++||++++++.||.||+||+++++|+++..+|+|++ +++|+++
T Consensus 284 p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~~~ 362 (429)
T 3qe7_A 284 PNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNK 362 (429)
T ss_dssp CEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred CcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999 8999998
Q ss_pred ccceeeehhHHHhhcchhhhhhhhhhhcCCCCccccccccccccccccccchhHHHHHHHHHHhhcCCCCcc
Q 010772 391 FRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQ 462 (501)
Q Consensus 391 ~rn~~ivg~sl~~Gl~~p~~~~~~~~~~~~~p~~~~~~~lp~~~~~~l~sgi~~g~l~ai~Ln~l~~~~~~~ 462 (501)
+||.+|+++++.+|++.-. +| ++.+..||+++|+++|++||+++|++++.
T Consensus 363 ~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~l~~~~~~ 412 (429)
T 3qe7_A 363 AQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLIFKLISVL 412 (429)
T ss_dssp HHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHHHTCCC--
T ss_pred cchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHHhcCcccc
Confidence 8999999999999997421 23 45688999999999999999999987433
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=60.81 E-value=1.2e+02 Score=31.14 Aligned_cols=67 Identities=16% Similarity=0.328 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcc-cccccHHHH--H-----HHHHHHHHHHHHHHhhhhHHHHHHhcCcchHHHH
Q 010772 74 IQTLLFVAGLNTLLQSLFGTRLPA-KFKRTMRAI--Q-----GSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPL 141 (501)
Q Consensus 74 i~~~ll~sGi~Tllq~~~G~rlPi-~~~~~~~~~--~-----Ga~ivaGli~~llg~~gl~~~l~~~fpp~V~G~~ 141 (501)
++..+.+-|++|++-+++| ..|. +|.+.-... - -....+|++.+++++++.+..+...+|..|.|.+
T Consensus 263 ~~r~l~adGla~i~~glfG-g~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~ 337 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFG-STPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGV 337 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcC-CCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4688999999999999998 5787 332211110 0 0357888999999988767889999998777664
No 3
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=19.12 E-value=60 Score=34.17 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=29.2
Q ss_pred ccchhHHHHHHHHHHhhcCCCCccchhhccccccccccc
Q 010772 439 SSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWS 477 (501)
Q Consensus 439 ~sgi~~g~l~ai~Ln~l~~~~~~~~~~~~~~~~~~~~~~ 477 (501)
.-++..+.++..+||.....+..+++|.+|++-|+-++.
T Consensus 408 ~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~ 446 (490)
T 3hd6_A 408 AMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEG 446 (490)
T ss_dssp HHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTT
T ss_pred HHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcc
Confidence 346777888888899887766666778888888866543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.96 E-value=4.9e+02 Score=24.97 Aligned_cols=37 Identities=5% Similarity=-0.077 Sum_probs=23.8
Q ss_pred hhhHH-hhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010772 54 LIPTS-LVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (501)
Q Consensus 54 ~~Pli-l~~a~gl~~~~~~~li~~~ll~sGi~Tllq~~ 90 (501)
..|.. +.+..|.+..+...+.....++..++.++-..
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 66667999887776666555555666665554
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=9.84 E-value=1.1e+03 Score=22.40 Aligned_cols=37 Identities=16% Similarity=-0.025 Sum_probs=24.5
Q ss_pred hhhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 010772 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (501)
Q Consensus 54 ~~Plil~~a~gl~~~~~~~li~~~ll~sGi~Tllq~~ 90 (501)
..|..+.+..|.++.+...+.....++..++.++-..
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577776668999887776665555555666666554
No 6
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=8.59 E-value=64 Score=19.84 Aligned_cols=23 Identities=22% Similarity=0.136 Sum_probs=16.2
Q ss_pred CCcceehhhhHHHHhhhcCCCCC
Q 010772 292 LSRGVGWQGVGILLSGLFGTVNG 314 (501)
Q Consensus 292 i~r~l~adGl~~ilaglfG~~p~ 314 (501)
+++.+++++++.++-++|++-|.
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHhcccC
Confidence 34667888889999899888764
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=6.93 E-value=3.8e+02 Score=26.03 Aligned_cols=38 Identities=8% Similarity=0.274 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCC---cc-cccccHHHHHHHHHHHHHHHHH
Q 010772 82 GLNTLLQSLFGTRL---PA-KFKRTMRAIQGSLIVASTLQIV 119 (501)
Q Consensus 82 Gi~Tllq~~~G~rl---Pi-~~~~~~~~~~Ga~ivaGli~~l 119 (501)
-.-|++-++||.+. |- .+.+|+..+++.+++.+++...
T Consensus 290 lP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~ 331 (339)
T 4ev6_A 290 AVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVY 331 (339)
T ss_dssp SHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHH
Confidence 45678888899875 44 4567778777776665554433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=6.45 E-value=1.5e+03 Score=21.26 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=26.5
Q ss_pred hhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 010772 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (501)
Q Consensus 55 ~Plil~~a~gl~~~~~~~li~~~ll~sGi~Tllq~~~ 91 (501)
.|. +.+..|++..+...+.+...+...++.++-+.+
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l 84 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGIL 84 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 454 345589999988888877777777777777653
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=5.95 E-value=2.9e+02 Score=28.18 Aligned_cols=31 Identities=3% Similarity=-0.081 Sum_probs=17.9
Q ss_pred chhHHHHHHHHHHhhcCCCCccchhhccccccccc
Q 010772 441 EPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKF 475 (501)
Q Consensus 441 gi~~g~l~ai~Ln~l~~~~~~~~~~~~~~~~~~~~ 475 (501)
....+.++..++|. +..+++|.+|+.-|+-|
T Consensus 333 s~v~~~i~~~il~~----r~~~e~e~~g~~~we~p 363 (407)
T 3b9w_A 333 ALIGGVIAGALIKL----TGTTKQAYEDSHEFIHL 363 (407)
T ss_dssp HHHHHHHHHHHHHT----TCCCSSTTCGGGTSSSC
T ss_pred HHHHHHHHHHHHhC----CCCHHHHcCCcccccCc
Confidence 45566667777776 22334556665666543
No 10
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=5.93 E-value=2.2e+02 Score=29.04 Aligned_cols=35 Identities=11% Similarity=-0.031 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHhhcCCCCccchhhcccccccc
Q 010772 440 SEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDK 474 (501)
Q Consensus 440 sgi~~g~l~ai~Ln~l~~~~~~~~~~~~~~~~~~~ 474 (501)
-....+.++..++|.+.+.+-.+++|++|++.-++
T Consensus 351 ~~~v~~~i~~~il~~~~glRv~~e~E~~GlD~~~h 385 (399)
T 2b2h_A 351 YAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQH 385 (399)
T ss_dssp HHHHHHHHHHHHHHHHTCSBCCHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHhCCCHHHh
Confidence 45667777888888887766556677788776444
Done!