Query 010772
Match_columns 501
No_of_seqs 193 out of 1728
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 13:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010772.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010772hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 25.5 1.5E+02 0.011 26.3 9.9 19 252-270 22-40 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 9.7 5E+02 0.037 22.2 9.3 37 55-91 272-308 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 4.9 3.5E+02 0.025 22.6 5.0 43 55-97 30-76 (417)
4 d2axta1 f.26.1.1 (A:10-344) Ph 3.2 3.1E+02 0.023 24.7 2.9 42 434-475 193-234 (335)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 2.8 4.7E+02 0.034 14.7 2.4 15 192-206 12-26 (32)
6 d3cx5c1 f.32.1.1 (C:262-385) M 2.0 9.8E+02 0.072 17.7 4.3 41 352-393 17-57 (124)
7 d1xrda1 f.3.1.1 (A:1-52) Light 2.0 7.2E+02 0.052 16.0 2.7 17 333-349 11-27 (52)
8 d1gjwa1 b.71.1.1 (A:573-636) M 1.7 1.9E+02 0.014 19.2 -0.7 15 461-475 31-45 (64)
9 d1xg7a_ a.96.1.6 (A:) Hypothet 1.6 3.2E+02 0.023 23.6 0.5 28 448-479 47-74 (245)
10 d1ymga1 f.19.1.1 (A:6-239) Aqu 1.5 7.1E+02 0.052 20.4 2.6 16 443-458 204-220 (234)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=25.52 E-value=1.5e+02 Score=26.26 Aligned_cols=19 Identities=0% Similarity=-0.096 Sum_probs=9.2
Q ss_pred cCHHHHHHHHHHHHHHHHH
Q 010772 252 FDAGEAFAMMMASFVALVE 270 (501)
Q Consensus 252 f~~~~il~~~~i~lv~~~e 270 (501)
.+|..++..+..++....+
T Consensus 22 ~~w~i~~~~~~~~~~~~~~ 40 (447)
T d1pw4a_ 22 LRWQIFLGIFFGYAAYYLV 40 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555444444554443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.72 E-value=5e+02 Score=22.22 Aligned_cols=37 Identities=16% Similarity=-0.005 Sum_probs=27.1
Q ss_pred hhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 010772 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (501)
Q Consensus 55 ~Plil~~a~gl~~~~~~~li~~~ll~sGi~Tllq~~~ 91 (501)
.|..+.+..+.+.++.........+...+++++..++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 308 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 308 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhh
Confidence 4666667788998888877777777777777776653
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.93 E-value=3.5e+02 Score=22.63 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=31.6
Q ss_pred hhHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCCCcc
Q 010772 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPA 97 (501)
Q Consensus 55 ~Plil~~a~gl~~~~~~~li~~~ll~sGi~Tllq~~----~G~rlPi 97 (501)
.|..+.+..|+|+.|...+.+...+...++..+-+. +|.|..+
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l 76 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 355566778999999988888888888888887775 5655444
No 4
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.20 E-value=3.1e+02 Score=24.73 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=29.6
Q ss_pred cccccccchhHHHHHHHHHHhhcCCCCccchhhccccccccc
Q 010772 434 VNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKF 475 (501)
Q Consensus 434 ~~~~l~sgi~~g~l~ai~Ln~l~~~~~~~~~~~~~~~~~~~~ 475 (501)
+.-++++.+..+.=-+.+++.+.|++.+.+..++|-+.-||+
T Consensus 193 Ia~~fG~aLl~AMHGatVls~l~~e~~e~~s~~~~~~f~q~e 234 (335)
T d2axta1 193 VAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEE 234 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBBCCSCSSSCSGGGCCTTCSB
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcCCCcCCcccCCCCCCcc
Confidence 344667778888888899999998876555556665555553
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.84 E-value=4.7e+02 Score=14.70 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHH
Q 010772 192 FAVIFSVVIVWIYAH 206 (501)
Q Consensus 192 ~aiLigi~vG~i~a~ 206 (501)
.+...|+.+|.+++.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 356667777766653
No 6
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.00 E-value=9.8e+02 Score=17.68 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhhccceeeccCCCccc
Q 010772 352 FGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRV 393 (501)
Q Consensus 352 ~~~lia~IP~~V~ggvli~~f~~i~~~Gi~~l~~v~~~~~rn 393 (501)
+-+++.+||.-..| ++....+.+...-+-.+.+.+..+.|.
T Consensus 17 ~YaiLRsiP~k~~G-vl~~~~si~il~~lP~l~~s~~~s~~~ 57 (124)
T d3cx5c1 17 FYAILRSIPDKLLG-VITMFAAILVLLVLPFTDRSVVRGNTF 57 (124)
T ss_dssp HHHHHHTSSSHHHH-HHHHHHHHHGGGGHHHHCCCSSSSSTT
T ss_pred HHHHHhcCCcchhh-hHHHHHHHHHHHHHHHHhhhhhhhcch
Confidence 55789999998554 444433444443344444444443343
No 7
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=1.97 E-value=7.2e+02 Score=16.00 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHh
Q 010772 333 RRVVQISAGFMIFFSVL 349 (501)
Q Consensus 333 R~~~~~ag~~lillg~~ 349 (501)
|++.+.-++++.++++.
T Consensus 11 Rr~lva~~~fL~~LAl~ 27 (52)
T d1xrda1 11 RQALVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666777777666653
No 8
>d1gjwa1 b.71.1.1 (A:573-636) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=1.67 E-value=1.9e+02 Score=19.17 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=10.6
Q ss_pred ccchhhccccccccc
Q 010772 461 GQVRKDRGRHWWDKF 475 (501)
Q Consensus 461 ~~~~~~~~~~~~~~~ 475 (501)
++.+|-.|=+.|+..
T Consensus 31 ke~keitggrvw~gk 45 (64)
T d1gjwa1 31 KEPKEITGGRVWNGK 45 (64)
T ss_dssp SSCEEEEEEEEESSS
T ss_pred CCcccccCceeecCc
Confidence 345677788889884
No 9
>d1xg7a_ a.96.1.6 (A:) Hypothetical protein PF0904 {Pyrococcus furiosus [TaxId: 2261]}
Probab=1.63 E-value=3.2e+02 Score=23.64 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCCCccchhhccccccccccccC
Q 010772 448 VAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFK 479 (501)
Q Consensus 448 ~ai~Ln~l~~~~~~~~~~~~~~~~~~~~~~~~ 479 (501)
.-+++|.+..-. -.-+|+++|.++..+.
T Consensus 47 ~Lvi~naLvSYQ----LsgkGEe~W~eFs~yf 74 (245)
T d1xg7a_ 47 KLVIANSLVSYQ----LTGRGEDWWWEFARYF 74 (245)
T ss_dssp HHHHHHHHTCSS----CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCccHHHHHHHHHHHH
Confidence 347788888754 4667788998876633
No 10
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.47 E-value=7.1e+02 Score=20.39 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=9.0
Q ss_pred hHHHHHHHHH-HhhcCC
Q 010772 443 FVAGCVAFFL-DNTLHK 458 (501)
Q Consensus 443 ~~g~l~ai~L-n~l~~~ 458 (501)
.+|++++.++ +.++..
T Consensus 204 ~~Ga~laa~ly~~~~~~ 220 (234)
T d1ymga1 204 VIGAGLGSLLYDFLLFP 220 (234)
T ss_dssp HHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 4566666666 555443
Done!