BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010774
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 137/343 (39%), Gaps = 82/343 (23%)
Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPK----------------------KK 219
N S K+ A L S S L L D ELPP
Sbjct: 99 NPKSGDKELAHILSDSAPS----LVLAPPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279
+ + ++YTSGTTG PKG V+ +A+ + ++ + TG ED LPL H++
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-----EDVLVQGLPLFHVH 209
Query: 280 DQIIET-HCIHKGCSIGFWRGDVRYLMEDI-QELK--PTMFSGVPRVYDRIYTGISNKIS 335
++ + +G S+ R R+ E +EL TM GVP +Y RI + +
Sbjct: 210 GLVLGILGPLRRGGSV---RHLGRFSTEGAARELNDGATMLFGVPTMYHRI----AETLP 262
Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
+ L+K L G RL ++SG+A L
Sbjct: 263 ADPELAKALA------------------------------------GARL--LVSGSAAL 284
Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 455
P+H E + +G + + YG+TE+ AD GTVGVP+ VE RL
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
AL GEI +RG LF+ Y RPD T DG+F T
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRT 386
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 177/472 (37%), Gaps = 96/472 (20%)
Query: 46 WQFFCDSAKRIPNNQMLGGRK--VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
W F +A L GRK VS G TY EVY A R +R+ GV GD
Sbjct: 21 WDFLERAAA-------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 73
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
R G N + A A L + +I+NHAE + N +P +
Sbjct: 74 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133
Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
+ LKT+ F + + ++EE L +P + ++
Sbjct: 134 EAIRGE----LKTVQHFVVMDEKAPE-------GYLAYEEALGEEADPVRVPERAACGMA 182
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283
YT+GTTG PKGVV +++A+V L+ +V G SE+D +P+ H+ +
Sbjct: 183 ---YTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNAWCL 236
Query: 284 ETHCIHKGCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
G + R D L+E T +GVP V + +++ + S G
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV----WLALADYLESTG--- 289
Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE 401
++L +++ + AAP SL+ R + M
Sbjct: 290 ---------HRLKTLRRLVVGGSAAP--RSLI---------ARFERM------------- 316
Query: 402 FLRVTSGAPLTQGYGLTES--------CSGCFTSLA--DVFNMIGTVGVPMTTVEARLES 451
G + QGYGLTE+ SL+ + + G+P+ V RL
Sbjct: 317 ------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV--RLRV 368
Query: 452 VPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHT 497
E G VP+ GE+ L+G + GYY + T + DG+F T
Sbjct: 369 ADEEG----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 416
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 109/436 (25%), Positives = 171/436 (39%), Gaps = 88/436 (20%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA--ITYVPLYDTL 136
TY +V A R S + G+ GD ++ + PE+++A + + IT + T
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
A HA+ S A + + + C Y K + FA S + +
Sbjct: 111 AELA-----KHAKASRAKL----------LITQACYYEK-VKDFARESDVKVMCVDSAPD 154
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
C + E Q + ++ + Y+SGTTG PKGV+LT++ ++ SV Q
Sbjct: 155 GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLIT---SVAQQ- 210
Query: 257 VVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYLMEDIQE 310
V G ED LP+ HIY C + G I + ++ L+ I++
Sbjct: 211 -VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269
Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
K ++ VP V I +P LD
Sbjct: 270 YKVSIAPVVPPVMMSI-------------------------------------AKSPDLD 292
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES---CSGCFT 426
S +R + SG APL +E+ +R A L QGYG+TE+ + C
Sbjct: 293 KHDLSSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344
Query: 427 SLADVFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKR 482
+ F++ G G + E ++ PE G +S+PR GEIC+RG+ + GY
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVD-PETG----ASLPRNQPGEICIRGDQIMKGYLND 399
Query: 483 PDLTEEVI-VDGWFHT 497
P+ T I +GW HT
Sbjct: 400 PEATSRTIDKEGWLHT 415
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 171/440 (38%), Gaps = 88/440 (20%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY +V+ + + + GVN D + NCPE++++ A + + T A
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT---------A 140
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN-----VSSSQKKEAEE 193
A AE++ N I Y+ I N + E+
Sbjct: 141 TAANPFFTPAEIAKQAKASNTKLIITEAR-----YVDKIKPLQNDDGVVIVCIDDNESVP 195
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
+ C + E Q T E+ + ++ + Y+SGTTG PKGV+LT++ +V
Sbjct: 196 IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT--- 252
Query: 251 SVDQMFVVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYL 304
SV Q V G+ +D LP+ HIY C + G +I + ++ L
Sbjct: 253 SVAQQ--VDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL 310
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
+E IQ K T+ VP
Sbjct: 311 LELIQRCKVTVAPMVP-------------------------------------------- 326
Query: 365 AAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTESCS 422
P++ ++ S E + ++ + SGAAPL +E+ + A L QGYG+TE+
Sbjct: 327 --PIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384
Query: 423 GCFTSLA---DVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
SL + F + G G + E ++ P+ G D+LS GEIC+RG+ + G
Sbjct: 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKG 442
Query: 479 YYKRPDLTEEVI-VDGWFHT 497
Y P T E I DGW HT
Sbjct: 443 YLNNPAATAETIDKDGWLHT 462
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/450 (21%), Positives = 168/450 (37%), Gaps = 106/450 (23%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 54 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDC 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ +N ++ ++ FV + + IL+ + + K I+ +
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
++ F + T + LPP + I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 QAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
+A+ D +F G + + S +P H + + G + +R +
Sbjct: 218 RALAVRFSHARDPIF---GNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELK-------PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353
+ +Q+ K PT+FS + +
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAK-------------------------------- 302
Query: 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LT 412
+ L+D S + E + SG APL V E + P +
Sbjct: 303 ------------STLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIR 342
Query: 413 QGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEI 468
QGYGLTE+ S T D + G VG + EA+ L++ +G + RGE+
Sbjct: 343 QGYGLTETTSAILITPKGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGEL 395
Query: 469 CLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
+RG + SGY P+ T +I DGW H+
Sbjct: 396 SVRGPMIMSGYVNNPEATNALIDKDGWLHS 425
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 100/443 (22%), Positives = 168/443 (37%), Gaps = 92/443 (20%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ +N ++ ++ FV + + IL+ + + K I+ +
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
++ F + T + LPP + I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
+ A V + D +F G + S +P H + + G + +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
+ +Q+ K I S L LF F
Sbjct: 270 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
+ L+D S + E + SG APL V E + P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTL 475
+ S T D + G VG + EA+ L++ +G + RGE+C+RG +
Sbjct: 345 TTSAILITPEGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMI 397
Query: 476 FSGYYKRPDLTEEVI-VDGWFHT 497
SGY P+ T +I DGW H+
Sbjct: 398 MSGYVNNPEATNALIDKDGWLHS 420
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/442 (22%), Positives = 168/442 (38%), Gaps = 90/442 (20%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 54 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ +N ++ ++ FV + + IL+ + + K I+ +
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
++ F + T + LPP + I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
+ A V + D +F G + S +P H + + G + +R +
Sbjct: 218 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
+ +Q+ K I S L LF F
Sbjct: 275 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 300
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
+ L+D S + E + SG APL V E + P + QGYGLTE
Sbjct: 301 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
+ S + + + G VG + EA+ L++ +G + RGE+C+RG +
Sbjct: 350 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 403
Query: 477 SGYYKRPDLTEEVI-VDGWFHT 497
SGY P+ T +I DGW H+
Sbjct: 404 SGYVNNPEATNALIDKDGWLHS 425
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/443 (22%), Positives = 168/443 (37%), Gaps = 92/443 (20%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +TY E ++ ++R AM+ G+N R + N ++ + + + P D
Sbjct: 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ +N ++ ++ FV + + IL+ + + K I+ +
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
++ F + T + LPP + I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
+ A V + D +F G + S +P H + + G + +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
+ +Q+ K I S L LF F
Sbjct: 270 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
+ L+D S + E + SG APL V E + P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTL 475
+ S T D + G VG + EA+ L++ +G + RGE+C+RG +
Sbjct: 345 TTSAILITPEGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMI 397
Query: 476 FSGYYKRPDLTEEVI-VDGWFHT 497
SGY P+ T +I DGW H+
Sbjct: 398 MSGYVNNPEATNALIDKDGWLHS 420
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/426 (20%), Positives = 160/426 (37%), Gaps = 80/426 (18%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y E+ A R + + +RG+ GDR E ++ A Y+PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ I AE P I+ C P + I + + ++
Sbjct: 89 LHELDYFITDAE-----------PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ T+D + +++ I+YTSGTTG KG L++ + + L++ +
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPTM 315
T +D LP+ H + + ++ +G I + D +++ + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATV 245
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
GVP Y R+ L
Sbjct: 246 LXGVPTFYTRL---------------------------------------------LQSP 260
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
++ + G + +SG+APL +G + + YG TE+ ++ D +
Sbjct: 261 RLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNT-SNPYDGDRVP 319
Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTE-EVIV 491
G VG + V AR+ PE G +PRG+I ++G +F GY++ P+ T+ E
Sbjct: 320 GAVGPALPGVSARVTD-PETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRD 374
Query: 492 DGWFHT 497
DG+F T
Sbjct: 375 DGFFIT 380
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 168/438 (38%), Gaps = 82/438 (18%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +Y E + + G A+++ G+ R + NC E+ I + A + P +
Sbjct: 51 VDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ + ++ +I F + + +++ + + +KTIV + + + G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
C + F++ T PP +K ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
IV D ++ G S + +P H + + G + + D
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
++ +Q+ K T VP ++ I NK E Y L N
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
L + SG APL V E + P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
S + + + G G + +A++ + +L RGE+C++G L GY
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHT 497
P+ T+E+I +GW HT
Sbjct: 405 NNPEATKELIDEEGWLHT 422
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 158/433 (36%), Gaps = 91/433 (21%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +TY ++ A R + + G+ GDR + N E+ VP+
Sbjct: 28 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 87
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
L A V FI++ + + P ++ + T+ + S ++ A
Sbjct: 88 LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 146
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
+E V C + IMYTSGTTG PKGVV T++++ + S
Sbjct: 147 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 187
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
V + D LP+ H+ +G ++ +
Sbjct: 188 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 226
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
F +V+ I + ++ GGA+ L N + +P+ LD+
Sbjct: 227 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 269
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
F + ++G AP+P E +++ + + QGY LTESC G L+
Sbjct: 270 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 315
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
D G+ G T V R + + E G GE+ ++ + L Y+ RP+
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 367
Query: 485 LTEEVIVDGWFHT 497
T + +GWF T
Sbjct: 368 ATRDAFDNGWFRT 380
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 168/438 (38%), Gaps = 82/438 (18%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +Y E + + G A+++ G+ R + NC E+ I + A + P +
Sbjct: 51 VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ + ++ +I F + + +++ + + +KTIV + + + G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
C + F++ T PP +K ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
IV D ++ G S + +P H + + G + + D
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
++ +Q+ K T VP ++ I NK E Y L N
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
L + SG APL V E + P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
S + + + G G + +A++ + +L RGE+C++G L GY
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHT 497
P+ T+E+I +GW HT
Sbjct: 405 NNPEATKELIDEEGWLHT 422
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 158/433 (36%), Gaps = 91/433 (21%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +TY ++ A R + + G+ GDR + N E+ VP+
Sbjct: 42 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
L A V FI++ + + P ++ + T+ + S ++ A
Sbjct: 102 LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 160
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
+E V C + IMYTSGTTG PKGVV T++++ + S
Sbjct: 161 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
V + D LP+ H+ +G ++ +
Sbjct: 202 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 240
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
F +V+ I + ++ GGA+ L N + +P+ LD+
Sbjct: 241 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 283
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
F + ++G AP+P E +++ + + QGY LTESC G L+
Sbjct: 284 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 329
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
D G+ G T V R + + E G GE+ ++ + L Y+ RP+
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 381
Query: 485 LTEEVIVDGWFHT 497
T + +GWF T
Sbjct: 382 ATRDAFDNGWFRT 394
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 168/438 (38%), Gaps = 82/438 (18%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +Y E + + G A+++ G+ R + NC E+ I + A + P +
Sbjct: 51 VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ + ++ +I F + + +++ + + +KTIV + + + G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
C + F++ T PP +K ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
IV D ++ G S + +P H + + G + + D
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
++ +Q+ K T VP ++ I NK E Y L N
Sbjct: 273 ETFLKTLQDYKCTNVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
L + SG APL V E + P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
S + + + G G + +A++ + +L RGE+C++G L GY
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHT 497
P+ T+E+I +GW HT
Sbjct: 405 NNPEATKELIDEEGWLHT 422
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 164/433 (37%), Gaps = 71/433 (16%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V +TY E ++ A R M+ G+ + N ++ + + + P D
Sbjct: 83 VNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDI 142
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
+ ++ ++ +I F + + IL + + K ++ + S + ++
Sbjct: 143 YNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVI----LDSREDYMGKQ-- 196
Query: 196 VSCFSW-EEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
S +S+ E L G + + P ++T + IM +SG+TG PKGV LT++ I
Sbjct: 197 -SMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSH 255
Query: 252 V-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQ 309
D +F G + + +P H + + G I +R + + +Q
Sbjct: 256 CRDPVF---GNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQ 312
Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
+ K I S L LF F + L+
Sbjct: 313 DYK---------------------IQSA-LLVPTLFSFF---------------AKSTLV 335
Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSL 428
D S + E + SG APL V E + P + QGYGLTE+ S +
Sbjct: 336 DKYDLSNLHE--------IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITP 387
Query: 429 ADVFNMIGTVG--VPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
+ G G VP + + L++ +G + RGE+C++G + GY P+
Sbjct: 388 RGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQ-----RGELCVKGPMIMKGYVNNPEA 442
Query: 486 TEEVI-VDGWFHT 497
T +I DGW H+
Sbjct: 443 TSALIDKDGWLHS 455
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 91/431 (21%), Positives = 163/431 (37%), Gaps = 90/431 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y E+ A R + + +RG+ GDR E ++ A Y+PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ I AE P I+ C P + I + + ++
Sbjct: 89 LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ T+D + +++ I+YTSGTTG G +L++ + + L++ +
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
T +D LP+ H TH + ++ F RG + +L + I +L
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
+ T+ GVP Y R+
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
L ++ G ++ +SG+APL +G + + YG+TE+ ++ D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
+ G VG + V AR+ PE G + +PRG+I + G +F GY++ P+ T
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHT 497
E DG+F T
Sbjct: 370 SEFRDDGFFIT 380
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/431 (21%), Positives = 163/431 (37%), Gaps = 90/431 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y E+ A R + + +RG+ GDR E ++ A Y+PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ I AE P I+ C P + I + + ++
Sbjct: 89 LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ T+D + +++ I+YTSGTTG G +L++ + + L++ +
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
T +D LP+ H TH + ++ F RG + +L + I +L
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
+ T+ GVP Y R+
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
L ++ G ++ +SG+APL +G + + YG+TE+ ++ D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
+ G VG + V AR+ PE G + +PRG+I + G +F GY++ P+ T
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHT 497
E DG+F T
Sbjct: 370 SEFRDDGFFIT 380
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/431 (21%), Positives = 163/431 (37%), Gaps = 90/431 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y E+ A R + + +RG+ GDR E ++ A Y+PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+ +++ I AE P I+ C P + I + + ++
Sbjct: 89 LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
+ T+D + +++ I+YTSGTTG G +L++ + + L++ +
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
T +D LP+ H TH + ++ F RG + +L + I +L
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
+ T+ GVP Y R+
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
L ++ G ++ +SG+APL +G + + YG+TE+ ++ D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
+ G VG + V AR+ PE G + +PRG+I + G +F GY++ P+ T
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHT 497
E DG+F T
Sbjct: 370 SEFRDDGFFIT 380
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 99/436 (22%), Positives = 172/436 (39%), Gaps = 87/436 (19%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
+ E+ + + S + +GV G+ G+ N +++ + A A T VP+ +
Sbjct: 54 NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKS 113
Query: 139 NAVEFIINHAEVSIAFVQ----ENKIPSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEE 193
+E I+N +E + V EN P + + R + + S + V S ++ E
Sbjct: 114 FELEHILNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFEN 173
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
+ V+ + +++ I YT GTTG PKGV LT+ + A L
Sbjct: 174 VKVN--------------------PEEDVALIPYTGGTTGXPKGVXLTHFNLAANAL--- 210
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS-IGFWRGDVRYLMEDIQELK 312
Q+ V TG S DT P H + + + G + + L E+I++ K
Sbjct: 211 QLAVATG--LSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYK 268
Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
T VP + + + + S K ++++Y
Sbjct: 269 GTFSWAVPPALNVLVNTLES--------SNKTYDWSY----------------------- 297
Query: 373 VFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTS---GAPL---TQGYGLTESCSGCF 425
L+ +GA P+ P VE+ L++ + P Q +G TE+C
Sbjct: 298 ------------LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 426 TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
T+ + T GVP + +E ++ S+ E G + L GEI +RG +F GY+KR
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISL-EDGRE-LGVGESGEIVIRGPNIFKGYWKREKE 403
Query: 486 TEEVIVDGWFHTEVHR 501
+E W++ E R
Sbjct: 404 NQEC----WWYDEKGR 415
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/431 (21%), Positives = 153/431 (35%), Gaps = 90/431 (20%)
Query: 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
V LT+++ A R S + GV+ GDR I NC E I + A +P+
Sbjct: 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
L A+ + F++ S+ + + LP S V K+A +G
Sbjct: 90 LNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP----------SLGGV-----KKAYAIG 134
Query: 196 VSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
+ F L + P + I++T+ G P+G +++ ++ + Q
Sbjct: 135 DGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL-----IAQ 189
Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 313
+V +E D LPL H+ ++ T G S+ + D DI+ K
Sbjct: 190 SSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKV 249
Query: 314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373
T+ + EFA LGN+ ++AAP
Sbjct: 250 TVMA----------------------------EFA--PMLGNI-----LDQAAPAQ---- 270
Query: 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433
+ +R G P +E F A +G +E+ ++ A +
Sbjct: 271 LASLRAVTG----------LDTPETIERFEATCPNATFWATFGQSETSG--LSTFAPYRD 318
Query: 434 MIGTVGVPM-----TTVEARLESVP--EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT 486
+ G P+ V+A +P E+G EI LRG T+F GY+ T
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLPPGEVG----------EIVLRGPTVFKGYWNNAAAT 368
Query: 487 EEVIVDGWFHT 497
+ +GW HT
Sbjct: 369 QHAFRNGWHHT 379
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 26/203 (12%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L YQ + A + S + GDR + E++ A AC + VPL G
Sbjct: 49 LEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG 108
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
+ K+ +L SC P + + N ++ + EL V
Sbjct: 109 VGQRD------------SWSAKLQGLLASCQPAAIITGDEWLPLVNAAT---HDNPELHV 153
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQ 254
+W F L D L +I+ + YTSG+T P+GV++T++ + A + +S D
Sbjct: 154 LSHAW--FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDG 211
Query: 255 MFVVTGKVCSEEDTYFSFLPLAH 277
+ + G C S+LP H
Sbjct: 212 IKLRPGDRC------VSWLPFYH 228
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 466 GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
G IC+ G +L SGY+ +E+ GW T
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEIAATGWLDT 442
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 42/299 (14%)
Query: 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99
A +E+P F +A N+ G+ G TY E+ + A RF SA+R+ GV
Sbjct: 14 ATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTGS---TTYGELEERARRFASALRTLGV 70
Query: 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEV-----SIAF 154
+P +R + + +A + V L +++ H+ S A
Sbjct: 71 HPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL 130
Query: 155 VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 214
VQ N ++ S C + IVS Q +E+E F EE + +
Sbjct: 131 VQ-NVTQALESAEHDGC---QLIVS-------QPRESEPRLAPLF--EELIDAAAPAAKA 177
Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
+I+ +Y+SG+TG+PKG V T+ A + +++ +E D FS
Sbjct: 178 AATGCDDIAFWLYSSGSTGKPKGTVHTH----ANLYWTAELYAKPILGIAENDVVFSAAK 233
Query: 275 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED----------IQELKPTMFSGVPRVY 323
L Y + G + G LM + + E +PT+F GVP +Y
Sbjct: 234 LFFAYG-------LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y+E++ RF + + G+ GD IY PE +AM AC + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
AV I + + + + + S + LK V A NV+S + +
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
S W+E L D + P+ + I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y+E++ RF + + G+ GD IY PE +AM AC + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
AV I + + + + + S + LK V A NV+S + +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGAS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
S W+E L D + P+ + I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y+E++ RF + + G+ GD IY PE +AM AC + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
AV I + + + + + S + LK V A NV+S + +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
S W+E L D + P+ + I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y+E++ RF + + G+ GD IY PE +AM AC + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
AV I + + + + + S + LK V A NV+S + +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
S W+E L D + P+ + I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y+E++ RF + + G+ GD IY PE +AM AC + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
AV I + + + + + S + LK V A NV+S + +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
S W+E L D + P+ + I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 118/279 (42%), Gaps = 65/279 (23%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT-YFSFLPLAHIY 279
+I++IM+TSGTTG K V T + A + + + + DT + S LP+ HI
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE------SLGFDRDTNWLSVLPIYHIS 217
Query: 280 DQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
+ + +G ++ R+ D+
Sbjct: 218 GLSVLLRAVIEGFTV--------------------------RIVDKFN------------ 239
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
++++ N ++ ++ +PQ L+ L+ + E + LQ +L G A L +
Sbjct: 240 -AEQILTMIKNERITHISL-VPQT-----LNWLMQQGLHEPYN--LQKILLGGAKLSATM 290
Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYD 458
E + P+ +G+TE+CS T+ ++ + TVG+P V+ ++++ + G+
Sbjct: 291 IE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH- 348
Query: 459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
GE+ ++G + +GY DLT +G+F+T
Sbjct: 349 -------GELMIKGANVMNGYLYPTDLT-GTFENGYFNT 379
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 47/202 (23%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y+E+ + A R ++ G G +Y E +I + Y+P+ L
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
E++I +L+ CL K++A EL
Sbjct: 550 -------------------EDRISYMLADSAAACLL---------THQEMKEQAAELPYT 581
Query: 195 GVSCF-----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
G + F +EE Q + P + + IMYTSGTTG+PKG + T+ I V
Sbjct: 582 GTTLFIDDQTRFEE--QASDPATAIDP---NDPAYIMYTSGTTGKPKGNITTHANIQGLV 636
Query: 250 LSVDQMFVVTGKVCSEEDTYFS 271
VD M S++DT+ S
Sbjct: 637 KHVDYM------AFSDQDTFLS 652
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 398 HVEEFLRVTSGAPLTQGYGLTE----SCSGCFTSLADVFNMIGTVGVPMTTVEARL--ES 451
HV + LR+ L YG TE + + L D + + +G P++ + E
Sbjct: 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSL-PIGKPISNASVYILNEQ 794
Query: 452 VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWF 495
+ A+ GE+C+ G + GY R DLT+E ++ F
Sbjct: 795 SQLQPFGAV-----GELCISGMGVSKGYVNRADLTKEKFIENPF 833
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y+E++ RF + + G+ GD IY PE +AM AC + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
AV I + + + + + S + LK V A NV+S + +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
S W+E L D + P+ + I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
++Y+E++ RF + + G+ GD IY PE +AM AC + ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
AV I + + + + + S + LK V A NV+S + +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
S W+E L D + P+ + I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 34/199 (17%)
Query: 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
Q F + + PNN + V LTY E+ A + +G+ G
Sbjct: 43 QLFEEQVSKRPNNVAI---------VCENEQLTYHELNVKANQLARIFIEKGIGKDTLVG 93
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
I + I + A YVP+ +++I++ ++ + Q++ + I +
Sbjct: 94 IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN- 152
Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
+ V + + +E L V P K T+++ ++
Sbjct: 153 -----IQFNGQVEIFEEDTIKIREGTNLHV-------------------PSKSTDLAYVI 188
Query: 227 YTSGTTGEPKGVVLTNQAI 245
YTSGTTG PKG +L ++ I
Sbjct: 189 YTSGTTGNPKGTMLEHKGI 207
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 19/91 (20%)
Query: 414 GYGLTES--CSGCFTSLADVFNMIGTVGVPMTTVEA-------RLESVPEMGYDALSSVP 464
YG TE+ C+ + + + +G P+ + +L+SV E G
Sbjct: 322 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAG-------- 373
Query: 465 RGEICLRGNTLFSGYYKRPDLTEEVIVDGWF 495
E+C+ G L GY+KRP+LT + VD F
Sbjct: 374 --ELCIGGEGLARGYWKRPELTSQKFVDNPF 402
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 33/181 (18%)
Query: 96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV 155
+ GV PGDR + S E I+A+ A YVP+ + +FI+ + S A +
Sbjct: 79 AEGVRPGDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGAS-ALI 137
Query: 156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 215
E P + +V A V+ + K+AE V+ P
Sbjct: 138 GE----------PHEGCAVTRVVRTAAVA--ECKDAEPGPVTG---------------AP 170
Query: 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275
+++ ++YTSGTTG PKGV + + ++A + +F +G +D + F L
Sbjct: 171 GPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSG-----DDRWLLFHSL 225
Query: 276 A 276
+
Sbjct: 226 S 226
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 466 GEICLRGNTLFSGYYKRPDLTEE 488
GE+ L G L GY +RP+LT E
Sbjct: 378 GELWLSGAQLAEGYLRRPELTAE 400
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
TY+++ A + +++ G PGDR + + I A C VP+Y
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP--- 98
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
A E +++ A+ R K ++ +K A+EL +
Sbjct: 99 -AQEKLLDKAQ-------------------RIVTNSKPVIVLXIADHIKKFTADELNTN- 137
Query: 199 FSWEEFLQLGTLDCE----------LPPKKKTN-ISTIMYTSGTTGEPKGVVLTNQAIVA 247
+FL++ + E P K+N I+ + YTSG+T PKGV +++ ++
Sbjct: 138 ---PKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLD 194
Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
+++++F T ++E FS+LP H
Sbjct: 195 ---NLNKIF--TSFHXNDETIIFSWLPPHH 219
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY + + A R + GV PG G++ + ++A+ A Y L
Sbjct: 101 LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDP--- 157
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+F + +S+ ++ P +++ P T + ++ A
Sbjct: 158 ----QFPVERLALSL---EDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPA------ 204
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
G L + P+ +++ +M+TSG+TG PKGV+ ++A+ L D
Sbjct: 205 ----------GNLATGVGPE---DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD 247
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 369 LDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL 428
L + + ++ EAF G A+ G HV + R L GYG ES FT+
Sbjct: 313 LFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG--FTTH 370
Query: 429 ADVF--NMIGT---VGVPMTTVEARL--ESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
V ++ GT +GVP+ A + + + AL GE+ + G L GY
Sbjct: 371 HAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL-----GELYVAGAGLAHGYVS 425
Query: 482 RPDLTEEVIV 491
RP LT E V
Sbjct: 426 RPALTAERFV 435
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
LTY + + A R + GV PG G++ + ++A+ A Y L
Sbjct: 101 LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDP--- 157
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
+F + +S+ ++ P +++ P T + ++ A
Sbjct: 158 ----QFPVERLALSL---EDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPA------ 204
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
G L + P+ +++ +M+TSG+TG PKGV+ ++A+ L D
Sbjct: 205 ----------GNLATGVGPE---DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD 247
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 369 LDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL 428
L + + ++ EAF G A+ G HV + R L GYG ES FT+
Sbjct: 313 LFNFLVDEVPEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG--FTTH 370
Query: 429 ADVF--NMIGT---VGVPMTTVEARL--ESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
V ++ GT +GVP+ A + + + AL GE+ + G L GY
Sbjct: 371 HAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL-----GELYVAGAGLAHGYVS 425
Query: 482 RPDLTEEVIVDGWF 495
RP LT E V F
Sbjct: 426 RPALTAERFVADPF 439
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 75 YVW----LTYQEVYDAAIRFGSAMRSRGVNPGDRCGI--YGSNCPEWIIAMEACNSQAIT 128
+VW +TY+++ + + + S P DR I YG PE II C
Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSE--YPDDRSPIMVYGHMQPEMIINFLGCVKAGHA 77
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
Y+P+ ++ A+ V+ I AE S A + + ++ LP IVS N+
Sbjct: 78 YIPVDLSIPADRVQRI---AENSGAKLLLSATAVTVTDLPV------RIVSEDNLKD--- 125
Query: 189 KEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
F F G T + E K N I+YTSG+TG PKGV +T +V+
Sbjct: 126 ---------IF----FTHKGNTPNPEHAVKGDENF-YIIYTSGSTGNPKGVQITYNCLVS 171
Query: 248 -EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283
+V+ + TG+V + + L + IY ++
Sbjct: 172 FTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 75 YVW----LTYQEVYDAAIRFGSAMRSRGVNPGDRCGI--YGSNCPEWIIAMEACNSQAIT 128
+VW +TY+++ + + + S P DR I YG PE II C
Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSE--YPDDRSPIMVYGHMQPEMIINFLGCVKAGHA 77
Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
Y+P+ ++ A+ V+ I AE S A + + ++ LP IVS N+
Sbjct: 78 YIPVDLSIPADRVQRI---AENSGAKLLLSATAVTVTDLPV------RIVSEDNLKD--- 125
Query: 189 KEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
F F G T + E K N I+YTSG+TG PKGV +T +V+
Sbjct: 126 ---------IF----FTHKGNTPNPEHAVKGDENFY-IIYTSGSTGNPKGVQITYNCLVS 171
Query: 248 -EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283
+V+ + TG+V + + L + IY ++
Sbjct: 172 FTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 104/292 (35%), Gaps = 59/292 (20%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 272 FLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED-----IQELKPTMFSGVPRVYDRI 326
+PL H+ +GF+ V L D ++E +P D +
Sbjct: 202 LMPLYHV---------------VGFFAVLVAALALDGTYVVVEEFRPV---------DAL 237
Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
+++S FA L + ++ LDSL F G
Sbjct: 238 QLVQQEQVTS---------LFATPTHLDALAAAAAHAGSSLKLDSLRHV----TFAG--- 281
Query: 387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVE 446
A +P V E + GYG TE+ + + GT P E
Sbjct: 282 ------ATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPKT----GTEMAPGFFSE 331
Query: 447 ARLESVPEMGYDALSSVPRGEICLRG-NTLFSGYYKRPDLTEEVIVDGWFHT 497
R+ + + +++ GE+ + ++ F GY +P T E + DGW+ T
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 92/421 (21%), Positives = 149/421 (35%), Gaps = 86/421 (20%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
L+Y+E+ AA ++R +G+ PG+ + N E I T+ L LG
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYI----------TFFALL-KLG 99
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
V + +H + P++L + L+ F N ++ + +
Sbjct: 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGD--DFLNTFVTEHSSIRVVQLL 157
Query: 198 CFSWEEFLQLG----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
S E LQ D P ++ + GTTG PK + T+ V
Sbjct: 158 NDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR-- 215
Query: 254 QMFVVTGKVC--SEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLMEDIQE 310
+ ++C +++ Y +P AH Y + S+G F G L D
Sbjct: 216 -----SVEICQFTQQTRYLCAIPAAHNY-------AMSSPGSLGVFLAGGTVVLAAD--- 260
Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
P+ P + ++ ++ L A + L + +G + + A L
Sbjct: 261 --PSATLCFPLI-EKHQVNVT-----------ALVPPAVSLWLQALIEGESRAQLASL-- 304
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
K+ + G RL A L+ P I G L Q +G+ E +T L D
Sbjct: 305 -----KLLQVGGARLSATLAARIPAEI----------GCQLQQVFGMAEGLVN-YTRLDD 348
Query: 431 -VFNMIGTVGVPMTTVE----ARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKR 482
+I T G PM + A E P +P+GE+ RG F GYYK
Sbjct: 349 SAEKIIHTQGYPMCPDDEVWVADAEGNP---------LPQGEVGRLMTRGPYTFRGYYKS 399
Query: 483 P 483
P
Sbjct: 400 P 400
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 272 FLPLAHI 278
+PL H+
Sbjct: 202 LMPLYHV 208
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 468 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
I ++ F GY +P+ T E + DGW+ T
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKLQDGWYRT 383
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 272 FLPLAHI 278
+PL H+
Sbjct: 202 LMPLYHV 208
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 468 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
I ++ F GY +P T E + DGW+ T
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 272 FLPLAHI 278
+PL H+
Sbjct: 202 LMPLYHV 208
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 468 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
I ++ F GY +P T E + DGW+ T
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
E P ++ + I YTSGTTG PK ++ +A + VL M G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 272 FLPLAHI 278
+PL H+
Sbjct: 202 LMPLYHV 208
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 468 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
I ++ F GY +P T E + DGW+ T
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 50/176 (28%)
Query: 78 LTYQEVYDAAIRFGSAMRSRGVNPGDRCG---IYGSNCPEWIIAMEACNSQAITYVP--- 131
LTYQE+++ + R +A++ R G++ +YG P I++ Y+P
Sbjct: 27 LTYQELWEQSDRAAAAIQKR--ISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDL 84
Query: 132 ------LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
+ + ++ E +I+ A +SI V + VS+
Sbjct: 85 SIPSERIAKIIESSGAELLIHAAGLSIDAVGQQ---------------------IQTVSA 123
Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
+ E E VS W K+ I+YTSG+TG PKGV ++
Sbjct: 124 EELLENEGGSVSQDQW---------------VKEHETFYIIYTSGSTGNPKGVQIS 164
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 78/201 (38%), Gaps = 12/201 (5%)
Query: 78 LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
+TY+E+ + + + S GV GD +Y PE II + A + + ++
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173
Query: 137 GANAVEFIINHAE--VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
+N++ IN + V I + N+ ++ L+ +V +K +
Sbjct: 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 233
Query: 195 GVSC---FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA-IVAEVL 250
W + P + ++YTSG+TG PKGV + ++ +L
Sbjct: 234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 293
Query: 251 SVDQMFVVTGKVCSEEDTYFS 271
++ F +ED +F+
Sbjct: 294 TMRYTF-----DTHQEDVFFT 309
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157
G+ GDR + PEW + + C + ++P + + + + + ++ +
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 158 NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL---GTLDCE 213
I + + C L +K +VS SC W F +L +
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK---------------SCDGWLNFKKLLNEASTTHH 199
Query: 214 LPPKKKTNISTIMYTSGTTGEPK 236
S I +TSGT+G PK
Sbjct: 200 CVETGSQEASAIYFTSGTSGLPK 222
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157
G+ GDR + PEW + + C + ++P + + + + + ++ +
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 158 NKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL---GTLDCE 213
I + + C L +K +VS SC W F +L +
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK---------------SCDGWLNFKKLLNEASTTHH 199
Query: 214 LPPKKKTNISTIMYTSGTTGEPK 236
S I +TSGT+G PK
Sbjct: 200 CVETGSQEASAIYFTSGTSGLPK 222
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
E P ++ + I YTSGTTG PK ++ +A + VL G +
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQ---VGLRHGRHNVVLG 201
Query: 272 FLPLAHI 278
PL H+
Sbjct: 202 LXPLYHV 208
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 468 ICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
I ++ F GY +P T E + DGW+ T
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP----- 441
A+++G P FL T G L +G+G TE+ + + G++G P
Sbjct: 346 AVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVV-TIATFPWMEPKPGSIGKPTPGYK 403
Query: 442 --MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
+ + RL V E G ++++ + LF Y K P+ TEE DG++HT
Sbjct: 404 IELMDRDGRLCEVGEEGEIVINTMEGKPV-----GLFVHYGKDPERTEETWHDGYYHT 456
>pdb|3DKZ|A Chain A, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c.
pdb|3DKZ|B Chain B, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c
Length = 142
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 280 DQIIETHCIHKGCSIGFWRGDVR 302
D +IET C+ +G SI F G++R
Sbjct: 90 DLVIETRCLRRGASIAFCEGEIR 112
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 83/225 (36%), Gaps = 64/225 (28%)
Query: 79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--------------IIAMEACNS 124
+Y+E+ A R + + G+ DR + N E+ + A+ + S
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 125 QAITYVPLYDTLGANAVEFIINHAEV-----SIAFVQENKIPSILSCLPRCCLYLKTIVS 179
ITY + A A +II A S+A ++K+P+ LK I+
Sbjct: 112 SEITYFCEF----AEAAAYIIPDAYSGFDYRSLARQVQSKLPT-----------LKNIIV 156
Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE---LPPKKKTNISTIMYTSGTTGEPK 236
EEFL L L E LP K ++++ + + G+TG K
Sbjct: 157 AGEA------------------EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 237 GVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIY 279
+ T+ + + + +VC Y + LP+AH Y
Sbjct: 199 LIPRTHDDYIYSLKR-------SVEVCWLDHSTVYLAALPMAHNY 236
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 225 IMYTSGTTGEPKGVVLTNQAIVA 247
I++TSGTTG+PKGV +++ +++
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLS 172
>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
Length = 789
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 291 GCSIGFWRGD------VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK-ISSGGALSKK 343
G IG +R D R ++ PTM P+VY R+Y G + + I +KK
Sbjct: 707 GSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYLGTNGRGIVYADLTNKK 766
Query: 344 LFEFAYNYKLGNMKKG 359
E K N +KG
Sbjct: 767 SNEEKSTAKCANGQKG 782
>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
Length = 789
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 291 GCSIGFWRGD------VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK-ISSGGALSKK 343
G IG +R D R ++ PTM P+VY R+Y G + + I +KK
Sbjct: 707 GSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYLGTNGRGIVYADLTNKK 766
Query: 344 LFEFAYNYKLGNMKKG 359
E K N +KG
Sbjct: 767 SNEEKSTAKCANGQKG 782
>pdb|2W9M|A Chain A, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
pdb|2W9M|B Chain B, Structure Of Family X Dna Polymerase From Deinococcus
Radiodurans
Length = 578
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 17/189 (8%)
Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG--GALSKKLFEFAYNYKLGNMKKGMP 361
L E+ EL F+G+P+V I +S+ SG L + +G+
Sbjct: 47 LNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLG 106
Query: 362 QNKAAPL----LDSLVFSKIREAFGGRLQAMLSG-----AAPLPIHVEEFLRVTSGAPLT 412
K L +DSL ++REA A L G AA + +V L
Sbjct: 107 PKKIRSLWLAGIDSL--ERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLR 164
Query: 413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG 472
G + E +G T L+ G V + TV A +V D L+ +P E+ ++G
Sbjct: 165 AGLAVAEELAGALTDLSPA--PAGDVRRGLETVRAAELTVTGTPDDVLARLP--ELTVQG 220
Query: 473 NTLFSGYYK 481
+ + SG Y+
Sbjct: 221 DGVLSGDYE 229
>pdb|1MIO|C Chain C, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|A Chain A, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 533
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 308 IQELKPTMFSGVPRVYDRIYTGISNK--ISSGGALSKKLFEFAYN 350
+++LKP MF + GI K I GG LSK+L + YN
Sbjct: 452 LEKLKPDMF----------FAGIKEKFVIQKGGVLSKQLHSYDYN 486
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 385 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV-GVPMT 443
L+ + G A P + + L Q +G+ E +T L D I T G P++
Sbjct: 309 LKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVN-YTRLDDSDEQIFTTQGRPIS 367
Query: 444 TVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
+ + ++ V E VP GEI + RG F GYY+ P+ +V D ++++
Sbjct: 368 S-DDEIKIVDEQ----YREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS 420
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,232,509
Number of Sequences: 62578
Number of extensions: 646528
Number of successful extensions: 1335
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 129
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)