BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010775
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/483 (48%), Positives = 323/483 (66%), Gaps = 8/483 (1%)
Query: 7 ACSKVHAVCIPSPFQSHIXXXXXXXXXXXXXGFHITFVNTEFNHRRLLKARGQHSLDGLP 66
A K H V IP P Q HI GFHITFVNTE+NH+RLLK+RG + DG
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 67 SFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSC 126
F FE+IPDGL + +QD +L +++ N L P+ +LL +LN S+N P V+C
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKN-FLKPYCELLTRLNHSTNV--PPVTC 121
Query: 127 IISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKDKSCLTKEYL 186
++SD + FTI AA++ LP VL+F+ SACS + F++F E+G+ P KD+S LT L
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCL 181
Query: 187 NSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQV 246
+ +DWIPG+K+ R++D+ FI++T+P D+M +E + +K + I+++TF+ LE V
Sbjct: 182 ETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
Query: 247 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIY 306
+NALS P ++ IGPL LL QT Q L+S+ NL KE+TECL WL+ KEP SV+Y
Sbjct: 242 INALSSTIPS-IYPIGPLPSLLKQTP-QIHQLDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 307 VNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVAS 366
VNFGS M +QL+E A GL N FLWIIRPDLV G + +EF + ++G +AS
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIAS 359
Query: 367 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 426
WCPQ++VL HPSIGGFLTHCGWNS ES+C+GVPM+CWPF DQPT+ R++CNEW +GME
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 427 INGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNE 486
I D +V R E+ KL+ E++ G+KGK+M+ KAME K AEE P G S +NL+K++ +
Sbjct: 420 I---DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKD 476
Query: 487 ILL 489
+LL
Sbjct: 477 VLL 479
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 179/363 (49%), Gaps = 28/363 (7%)
Query: 124 VSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEK-GLFPVKDKSCLT 182
VSC+++D F+ F A ++G+ + F+T S +EK G+ ++ +
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGRE--- 169
Query: 183 KEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDAL 242
+ L+++IPGM +R RDL I + + + + KA+A+ I++F+ L
Sbjct: 170 ----DELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL 225
Query: 243 EQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPK 302
+ + N L +L IGP L+ ++ T CLQWL ++P
Sbjct: 226 DDSLTNDLKSKLKTYL-NIGPFNLITPPP-------------VVPNTTGCLQWLKERKPT 271
Query: 303 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKG 362
SV+Y++FG+ +++ ++ L S PF+W +R LP F K + G
Sbjct: 272 SVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDK----ARVHLPEGFLEKTRGYG 327
Query: 363 FVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWG 422
V W PQ EVL H ++G F+THCGWNS+ ES+ GVP+IC PF GDQ NGR V +
Sbjct: 328 MVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLE 387
Query: 423 VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDK 482
+G+ I G ++ + +++ EKGK++R + A+ A P GSS+ N
Sbjct: 388 IGVRIEGG--VFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFIT 445
Query: 483 LVN 485
LV+
Sbjct: 446 LVD 448
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/387 (32%), Positives = 185/387 (47%), Gaps = 39/387 (10%)
Query: 110 LAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKE 169
L K+ DS + ++ D F A + +P +F+ +A F E
Sbjct: 97 LRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDE 156
Query: 170 KGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENAS 229
SC +E L+ +PG + +D + D KD + + T+
Sbjct: 157 T-------VSCEFRELTEPLM--LPGCVPVAGKDF--LDPAQDRKDDAYKWLLHNTKRYK 205
Query: 230 KASAIIIHTFDALEQQVLNALS--FMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLK 287
+A I+++TF LE + AL + ++ +GPL + Q +Q
Sbjct: 206 EAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ------------T 253
Query: 288 EETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIR-PDLV--- 343
EE+ECL+WLD + SV+YV+FGS + +QL E+A+GL +S FLW+IR P +
Sbjct: 254 EESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANS 313
Query: 344 --------TGETADLPAEFEVKAKEKGFVAS-WCPQEEVLKHPSIGGFLTHCGWNSIVES 394
T LP F + K++GFV W PQ +VL HPS GGFLTHCGWNS +ES
Sbjct: 314 SYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLES 373
Query: 395 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN-GDDEDVIRNEVEKLVREMMEGEKGK 453
+ SG+P+I WP +Q N + + + GDD V R EV ++V+ +MEGE+GK
Sbjct: 374 VVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGK 433
Query: 454 QMRNKAMEWKGLAEEAAAPHGSSSLNL 480
+RNK E K A G+S+ L
Sbjct: 434 GVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 194/424 (45%), Gaps = 44/424 (10%)
Query: 65 LPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAV 124
LP+ ++ + DGLP S ++ L + H + +A+ + +
Sbjct: 66 LPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKN-------I 118
Query: 125 SCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEK-GLFPVKDKSCLTK 183
+C+++D F F A+++ V +T S + +EK G V D
Sbjct: 119 TCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKS--- 175
Query: 184 EYLNSLIDWIPGMKDIRIRDLP-SFIQSTDP--KDMMFNLCVEATENASKASAIIIHTFD 240
ID +PG +++ DLP I+ D M+ + +E +A+A+ I++F
Sbjct: 176 ------IDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLEL----PRANAVAINSFA 225
Query: 241 ALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKE 300
+ + N L+ F L +GP L Q + D E CL+WLD E
Sbjct: 226 TIHPLIENELNSKF-KLLLNVGPFNLTTPQRKVSD-------------EHGCLEWLDQHE 271
Query: 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE 360
SV+Y++FGS + +L +A L PF+W R D LP F + K
Sbjct: 272 NSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPKGFLERTKT 327
Query: 361 KGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNE 420
KG + +W PQ E+LKH S+G FLTH GWNS++E + GVPMI PF GDQ N + E
Sbjct: 328 KGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLN--TILTE 385
Query: 421 WGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNL 480
+ + + D+ + + ++K + M EKG MR K ++ K A +A +G+S+++
Sbjct: 386 SVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDF 445
Query: 481 DKLV 484
L+
Sbjct: 446 TTLI 449
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 189/383 (49%), Gaps = 47/383 (12%)
Query: 124 VSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKDKSCLT 182
V ++ D F I + G+P LF T S +GF + K + + V D S
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNRQIEEVFDDSDRD 170
Query: 183 KEYLNSLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIHTFD 240
+ LN IPG+ + +PS + + KD + + E II++TF
Sbjct: 171 HQLLN-----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFS 221
Query: 241 ALEQQVLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQW 295
LEQ ++AL + H ++ +GPL L Q + L+ ++L+ L+W
Sbjct: 222 DLEQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------LKW 269
Query: 296 LDCKEPKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 354
LD + KSV+++ FGS + Q+ E+A+GL +S FLW + E P F
Sbjct: 270 LDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGF 324
Query: 355 E--VKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPT 412
++ + KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +Q
Sbjct: 325 LEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQL 384
Query: 413 NGRYVCNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEE 468
N + EWGVG+ + D + V E+EK ++++M +K + K E K ++
Sbjct: 385 NAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRN 442
Query: 469 AAAPHGSSSLNLDKLVNEILLSN 491
A GSS +++ KL+++I SN
Sbjct: 443 AVVDGGSSLISVGKLIDDITGSN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 47/379 (12%)
Query: 124 VSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKDKSCLT 182
V ++ D F I + G+P LF T S +GF + K + + V D S
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNRQIEEVFDDSDRD 170
Query: 183 KEYLNSLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIHTFD 240
+ LN IPG+ + +PS + + KD + + E II++TF
Sbjct: 171 HQLLN-----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFS 221
Query: 241 ALEQQVLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQW 295
LEQ ++AL + H ++ +GPL L Q + L+ ++L+ L+W
Sbjct: 222 DLEQSSIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------LKW 269
Query: 296 LDCKEPKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 354
LD + KSV+++ FGS + Q+ E+A+GL +S FLW + E P F
Sbjct: 270 LDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGF 324
Query: 355 E--VKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPT 412
++ + KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +Q
Sbjct: 325 LEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQL 384
Query: 413 NGRYVCNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEE 468
N + EWGVG+ + D + V E+EK ++++M +K + K E K ++
Sbjct: 385 NAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRN 442
Query: 469 AAAPHGSSSLNLDKLVNEI 487
A GSS +++ KL+++I
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 367 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN 413
W PQ ++L HP F+TH G N I E++ G+P + P DQP N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 364 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 423
V W PQ ++L S F+TH G S +E+L + VPM+ P +Q N + E G+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 424 GMEINGD 430
G I D
Sbjct: 366 GRHIPRD 372
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 288 EETECLQWLDCKE-PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGE 346
E+ + WL ++ + ++Y+ G+ + L GL + L P L
Sbjct: 227 EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG 286
Query: 347 TADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF 406
++PA ++ SW PQ +L H + + H G + + +L +GVP + +P+
Sbjct: 287 LGEVPANVRLE--------SWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 407 TGD 409
GD
Sbjct: 337 AGD 339
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 354 FEVKAKEKGFVASWCPQEE-----------------VLKHPSIGGFLTHCGWNSIVESLC 396
FE KA++ GF S+ E V K +GG + G ++++E C
Sbjct: 241 FEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTC 300
Query: 397 SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR-NEVEKLVREMMEGEKGKQM 455
G+P+I P+T ++ E G G E+ + E V + E+ + +E+ EK +++
Sbjct: 301 WGIPVIYGPYTHKVNDLKEFLEKE-GAGFEVKNETELVTKLTELLSVKKEIKVEEKSREI 359
Query: 456 RNKAME 461
+ +E
Sbjct: 360 KGCYLE 365
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 295 WLDCKEPKSVIYVNFGSFIFMNKQQLIEV--AMGLVNSNHPFLWIIRPDLVTGETADLPA 352
W + V+ V+ GS E A G + H L I R + E +LP
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGR-KVTPAELGELPD 283
Query: 353 EFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQ 410
EV W PQ +L+ + F+TH G E L + PMI P DQ
Sbjct: 284 NVEVH--------DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 367 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 426
W P VL H LTH +++E+ +GVP++ P + E G+G
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 427 INGD--DEDVIRNEVEKL 442
+ D + IR VE+L
Sbjct: 346 LRPDQLEPASIREAVERL 363
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 367 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 426
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 427 INGDDED 433
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 367 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 426
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 427 INGDDED 433
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 341 DLVTGET-ADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGV 399
DLVT + + E E +A+++ F A WC EE++ H + HC E + +GV
Sbjct: 218 DLVTTDVWTSMGFEAENEARKRAF-ADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGV 276
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 364 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 423
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 424 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 470
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|3LFH|A Chain A, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|B Chain B, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|C Chain C, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|D Chain D, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|E Chain E, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|F Chain F, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
Length = 144
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 423 VGMEINGDDEDVIRNEVEKLVREMMEGEK 451
VG+ + GD+ +V+R EVEK+++E ++ +K
Sbjct: 35 VGLNL-GDNIEVVRKEVEKIIKEKLQEDK 62
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 364 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 423
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 424 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 470
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 293 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 343
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 293 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 343
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 85 PTAQDAYSLGENIIN------NVLLHPFLDLLAKLNDSSNS-VNPAVSCIISDGFLPFTI 137
P D+ S G+ +++ N+ +H F+ LL K + ++P V C DGF
Sbjct: 99 PGTTDS-SFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVC--RDGFNTRKF 155
Query: 138 TAAQQLGLPIVLFF 151
T +LGLP+ F
Sbjct: 156 TQENELGLPVAAVF 169
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 320 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 354
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 210 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 243
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 320 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 354
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 209 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,894,070
Number of Sequences: 62578
Number of extensions: 619059
Number of successful extensions: 1387
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 26
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)