Query 010775
Match_columns 501
No_of_seqs 127 out of 1409
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 1.3E-66 2.8E-71 529.8 48.3 461 1-490 1-470 (480)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.3E-66 5E-71 526.2 47.5 443 8-489 5-450 (451)
3 PLN02562 UDP-glycosyltransfera 100.0 4E-65 8.7E-70 518.8 47.0 439 8-488 4-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 7E-65 1.5E-69 513.0 46.1 436 9-488 4-447 (449)
5 PLN02210 UDP-glucosyl transfer 100.0 1.1E-63 2.3E-68 508.8 46.9 447 1-488 1-454 (456)
6 PLN02207 UDP-glycosyltransfera 100.0 1E-63 2.2E-68 506.3 46.1 448 10-490 3-466 (468)
7 PLN02448 UDP-glycosyltransfera 100.0 2.3E-63 5.1E-68 509.6 47.2 444 8-490 8-458 (459)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.6E-63 1E-67 505.5 47.5 462 1-490 1-472 (477)
9 PLN02992 coniferyl-alcohol glu 100.0 6.4E-63 1.4E-67 501.4 46.0 438 10-492 5-472 (481)
10 PLN02534 UDP-glycosyltransfera 100.0 1.5E-62 3.3E-67 500.7 46.6 458 8-492 6-489 (491)
11 PLN02152 indole-3-acetate beta 100.0 2.4E-62 5.1E-67 495.4 45.9 437 10-487 3-454 (455)
12 PLN02670 transferase, transfer 100.0 2.7E-62 5.8E-67 496.5 45.2 449 8-491 4-467 (472)
13 PLN03007 UDP-glucosyltransfera 100.0 3.7E-62 8.1E-67 503.2 46.4 451 8-489 3-480 (482)
14 PLN00164 glucosyltransferase; 100.0 6.1E-62 1.3E-66 499.0 46.9 445 9-490 2-474 (480)
15 PLN02764 glycosyltransferase f 100.0 1E-61 2.3E-66 488.3 45.2 435 8-495 3-451 (453)
16 PLN02554 UDP-glycosyltransfera 100.0 1.9E-61 4.2E-66 497.2 45.4 448 10-490 2-479 (481)
17 PLN03015 UDP-glucosyl transfer 100.0 4.9E-61 1.1E-65 484.8 45.9 441 10-488 3-467 (470)
18 PLN02208 glycosyltransferase f 100.0 2.9E-61 6.3E-66 487.8 42.8 418 9-490 3-440 (442)
19 PLN02167 UDP-glycosyltransfera 100.0 8.4E-61 1.8E-65 491.7 45.6 455 9-490 2-473 (475)
20 PLN03004 UDP-glycosyltransfera 100.0 1E-60 2.3E-65 482.9 42.3 435 11-478 4-450 (451)
21 PLN00414 glycosyltransferase f 100.0 2E-60 4.4E-65 482.2 44.3 422 9-492 3-443 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 4.8E-52 1E-56 428.7 28.7 418 11-491 21-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3E-53 6.5E-58 444.7 -1.6 413 12-490 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.1E-42 2.4E-47 353.5 34.7 381 16-488 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.3E-42 2.8E-47 354.5 24.9 382 11-486 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 4.1E-41 9E-46 338.5 21.5 399 10-493 1-404 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 9E-42 2E-46 357.9 16.6 428 10-489 5-455 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.2E-23 2.6E-28 209.2 28.8 319 12-461 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 8.1E-23 1.8E-27 202.0 25.2 306 11-446 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.6E-20 3.5E-25 184.6 29.7 314 11-450 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 4.7E-21 1E-25 189.2 23.3 125 302-451 188-316 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4.1E-17 8.9E-22 163.9 28.2 341 11-486 2-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4E-16 8.6E-21 156.3 27.5 314 12-451 1-326 (350)
34 TIGR01133 murG undecaprenyldip 99.7 9.2E-14 2E-18 139.0 29.7 78 369-451 243-323 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.6 2.3E-14 5E-19 144.7 22.7 106 370-484 261-383 (385)
36 PRK13609 diacylglycerol glucos 99.6 4.8E-13 1E-17 135.6 27.1 165 301-489 201-371 (380)
37 COG4671 Predicted glycosyl tra 99.6 3.9E-13 8.5E-18 126.4 21.6 138 301-450 218-366 (400)
38 TIGR03590 PseG pseudaminic aci 99.6 6.7E-13 1.5E-17 127.9 22.0 104 302-416 170-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.5 2E-12 4.2E-17 131.1 23.9 108 370-487 255-375 (380)
40 PRK13608 diacylglycerol glucos 99.4 1.6E-10 3.4E-15 117.4 29.7 165 301-489 201-371 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 6.4E-15 1.4E-19 131.2 -2.1 138 304-451 1-146 (167)
42 PLN02605 monogalactosyldiacylg 99.3 9.8E-10 2.1E-14 111.4 28.5 83 360-451 265-350 (382)
43 PF03033 Glyco_transf_28: Glyc 99.3 2.4E-13 5.3E-18 117.0 1.7 130 13-157 1-134 (139)
44 TIGR03492 conserved hypothetic 99.3 3.2E-10 7E-15 114.7 24.0 134 302-451 205-366 (396)
45 cd03814 GT1_like_2 This family 99.3 3.3E-08 7.1E-13 98.7 33.6 158 302-486 196-362 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.2 2.1E-07 4.4E-12 97.0 35.9 138 303-461 263-413 (465)
47 cd03823 GT1_ExpE7_like This fa 99.1 1.3E-07 2.9E-12 94.0 31.5 133 302-451 190-331 (359)
48 cd03818 GT1_ExpC_like This fam 99.1 6.7E-07 1.4E-11 91.2 33.8 81 360-451 281-368 (396)
49 cd03794 GT1_wbuB_like This fam 99.1 2.3E-07 4.9E-12 93.2 29.0 131 302-451 219-367 (394)
50 cd03800 GT1_Sucrose_synthase T 99.0 7.3E-07 1.6E-11 90.6 32.2 82 359-451 282-370 (398)
51 cd03801 GT1_YqgM_like This fam 99.0 1.1E-06 2.4E-11 87.1 32.9 111 358-485 254-371 (374)
52 cd03808 GT1_cap1E_like This fa 99.0 1.2E-06 2.6E-11 86.8 32.5 136 301-451 186-331 (359)
53 cd03817 GT1_UGDG_like This fam 99.0 9.5E-07 2.1E-11 88.2 31.8 81 359-451 258-345 (374)
54 cd04962 GT1_like_5 This family 99.0 9.7E-07 2.1E-11 88.9 30.0 111 359-487 252-368 (371)
55 TIGR00236 wecB UDP-N-acetylglu 99.0 5.4E-07 1.2E-11 90.8 27.3 105 360-484 255-362 (365)
56 COG3980 spsG Spore coat polysa 98.9 1.5E-07 3.2E-12 86.7 19.1 147 302-466 158-307 (318)
57 cd03816 GT1_ALG1_like This fam 98.9 5.6E-06 1.2E-10 84.9 33.2 90 361-463 295-399 (415)
58 cd03798 GT1_wlbH_like This fam 98.9 4.8E-06 1E-10 82.8 32.2 133 302-451 201-346 (377)
59 PRK10307 putative glycosyl tra 98.9 1.8E-05 4E-10 81.1 35.6 114 360-489 284-407 (412)
60 cd03825 GT1_wcfI_like This fam 98.9 5.9E-06 1.3E-10 82.7 31.1 112 358-487 242-362 (365)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 9.8E-07 2.1E-11 88.8 24.3 132 301-451 197-339 (363)
62 cd03795 GT1_like_4 This family 98.8 7.2E-06 1.6E-10 81.8 29.8 133 302-451 190-334 (357)
63 PRK05749 3-deoxy-D-manno-octul 98.8 9.9E-06 2.1E-10 83.4 30.9 72 371-451 314-390 (425)
64 TIGR03449 mycothiol_MshA UDP-N 98.8 1.7E-05 3.6E-10 81.1 31.1 92 359-461 282-381 (405)
65 TIGR02468 sucrsPsyn_pln sucros 98.8 2E-05 4.3E-10 86.9 32.8 411 8-490 167-671 (1050)
66 PF04007 DUF354: Protein of un 98.8 1.6E-05 3.5E-10 77.9 28.7 126 301-447 178-308 (335)
67 cd03820 GT1_amsD_like This fam 98.8 4.7E-05 1E-09 74.9 32.7 82 360-451 235-321 (348)
68 cd03796 GT1_PIG-A_like This fa 98.7 1.7E-05 3.7E-10 80.9 29.8 79 359-450 249-334 (398)
69 cd03821 GT1_Bme6_like This fam 98.7 2.8E-05 6.1E-10 77.5 30.8 80 359-451 261-347 (375)
70 cd03805 GT1_ALG2_like This fam 98.7 3.9E-05 8.4E-10 77.9 31.8 91 359-461 279-377 (392)
71 cd03819 GT1_WavL_like This fam 98.7 5.7E-05 1.2E-09 75.4 32.5 148 302-463 184-346 (355)
72 cd03799 GT1_amsK_like This is 98.7 8.1E-05 1.8E-09 74.1 33.1 82 359-451 235-329 (355)
73 cd03822 GT1_ecORF704_like This 98.7 5.9E-05 1.3E-09 75.2 30.9 81 359-451 246-336 (366)
74 TIGR02472 sucr_P_syn_N sucrose 98.7 3.5E-05 7.6E-10 79.7 29.5 82 359-451 316-408 (439)
75 cd05844 GT1_like_7 Glycosyltra 98.7 3.4E-05 7.3E-10 77.5 28.2 82 359-451 244-338 (367)
76 PRK09922 UDP-D-galactose:(gluc 98.6 6.7E-05 1.4E-09 75.4 29.7 147 303-464 180-342 (359)
77 cd03807 GT1_WbnK_like This fam 98.6 0.00059 1.3E-08 67.6 34.8 107 360-485 251-362 (365)
78 PLN02949 transferase, transfer 98.5 0.00065 1.4E-08 70.3 33.3 96 359-465 334-440 (463)
79 cd03811 GT1_WabH_like This fam 98.5 9.2E-05 2E-09 72.9 26.4 82 359-451 245-334 (353)
80 cd04951 GT1_WbdM_like This fam 98.5 0.00025 5.4E-09 70.8 29.4 107 359-485 244-356 (360)
81 cd03802 GT1_AviGT4_like This f 98.5 0.00019 4.2E-09 70.8 27.7 128 304-449 172-308 (335)
82 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 6.8E-05 1.5E-09 75.3 23.5 130 302-448 201-338 (365)
83 cd04955 GT1_like_6 This family 98.4 0.00052 1.1E-08 68.6 30.2 127 305-451 195-332 (363)
84 PRK14089 ipid-A-disaccharide s 98.4 0.00013 2.8E-09 72.2 24.2 147 303-466 168-332 (347)
85 cd03806 GT1_ALG11_like This fa 98.4 0.0016 3.5E-08 66.9 32.4 81 359-451 304-394 (419)
86 PLN02846 digalactosyldiacylgly 98.4 0.00087 1.9E-08 68.7 29.7 73 364-450 288-364 (462)
87 cd03812 GT1_CapH_like This fam 98.3 0.0013 2.9E-08 65.5 30.3 81 359-451 248-333 (358)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.0025 5.4E-08 63.1 30.1 307 12-451 50-388 (419)
89 TIGR03087 stp1 sugar transfera 98.3 0.00015 3.3E-09 73.9 22.8 80 359-451 279-364 (397)
90 TIGR02149 glgA_Coryne glycogen 98.3 0.0019 4.1E-08 65.4 30.8 164 303-488 201-385 (388)
91 PLN02275 transferase, transfer 98.3 0.0036 7.8E-08 63.2 32.2 75 360-447 286-371 (371)
92 COG0381 WecB UDP-N-acetylgluco 98.3 0.00098 2.1E-08 65.3 25.7 158 302-486 204-371 (383)
93 KOG3349 Predicted glycosyltran 98.3 4.1E-06 8.8E-11 69.7 7.8 117 303-427 4-132 (170)
94 cd03809 GT1_mtfB_like This fam 98.2 0.00075 1.6E-08 67.2 25.8 90 358-463 251-347 (365)
95 PRK01021 lpxB lipid-A-disaccha 98.2 0.0006 1.3E-08 71.1 25.1 155 300-467 411-590 (608)
96 TIGR03088 stp2 sugar transfera 98.2 0.0099 2.1E-07 59.9 33.6 110 360-487 255-370 (374)
97 cd03804 GT1_wbaZ_like This fam 98.1 0.00027 5.8E-09 70.7 20.3 126 304-450 196-327 (351)
98 PRK00654 glgA glycogen synthas 98.1 0.0019 4.1E-08 67.4 27.0 134 302-448 281-427 (466)
99 PF02684 LpxB: Lipid-A-disacch 98.1 0.0011 2.4E-08 66.0 23.8 163 301-478 183-366 (373)
100 TIGR02470 sucr_synth sucrose s 98.1 0.025 5.4E-07 61.6 34.7 81 360-451 619-715 (784)
101 PF02350 Epimerase_2: UDP-N-ac 98.1 0.00022 4.8E-09 71.0 17.5 155 300-480 178-342 (346)
102 cd03792 GT1_Trehalose_phosphor 98.1 0.0057 1.2E-07 61.7 28.1 110 359-488 251-370 (372)
103 PRK15179 Vi polysaccharide bio 98.1 0.026 5.7E-07 61.1 34.2 93 359-463 573-674 (694)
104 TIGR02095 glgA glycogen/starch 98.0 0.0063 1.4E-07 63.6 27.9 130 302-448 290-436 (473)
105 PLN00142 sucrose synthase 98.0 0.0064 1.4E-07 66.1 28.1 61 382-451 670-738 (815)
106 cd03791 GT1_Glycogen_synthase_ 98.0 0.0042 9.1E-08 65.0 25.9 135 302-449 295-442 (476)
107 cd04950 GT1_like_1 Glycosyltra 98.0 0.02 4.4E-07 57.7 30.0 109 359-489 253-371 (373)
108 PLN02316 synthase/transferase 97.9 0.05 1.1E-06 60.9 33.7 117 360-487 900-1031(1036)
109 TIGR02918 accessory Sec system 97.9 0.0031 6.7E-08 66.0 23.4 103 359-467 375-485 (500)
110 PRK15427 colanic acid biosynth 97.5 0.005 1.1E-07 63.0 16.9 112 359-488 278-404 (406)
111 PRK15484 lipopolysaccharide 1, 97.5 0.0085 1.8E-07 60.7 18.4 84 358-451 255-346 (380)
112 PF00534 Glycos_transf_1: Glyc 97.5 0.0023 4.9E-08 56.7 12.6 136 301-451 13-160 (172)
113 COG0763 LpxB Lipid A disacchar 97.4 0.028 6E-07 55.2 20.0 171 300-487 186-379 (381)
114 COG5017 Uncharacterized conser 97.4 0.0013 2.9E-08 53.9 9.0 107 305-428 2-122 (161)
115 PLN02501 digalactosyldiacylgly 97.4 0.054 1.2E-06 57.6 23.1 76 362-451 603-683 (794)
116 cd04946 GT1_AmsK_like This fam 97.4 0.0049 1.1E-07 63.1 15.6 84 360-451 289-379 (407)
117 cd04949 GT1_gtfA_like This fam 97.4 0.033 7.2E-07 56.0 21.0 100 359-466 260-363 (372)
118 cd03813 GT1_like_3 This family 97.3 0.14 3E-06 53.5 26.1 82 359-451 353-444 (475)
119 PF13844 Glyco_transf_41: Glyc 97.3 0.0073 1.6E-07 61.6 15.2 139 300-451 282-432 (468)
120 PRK09814 beta-1,6-galactofuran 97.1 0.0036 7.7E-08 62.2 10.5 110 359-485 206-331 (333)
121 PRK10017 colanic acid biosynth 96.8 0.78 1.7E-05 47.0 30.4 180 293-489 225-424 (426)
122 cd01635 Glycosyltransferase_GT 96.6 0.35 7.6E-06 44.0 19.5 50 359-410 160-217 (229)
123 PF13692 Glyco_trans_1_4: Glyc 96.5 0.011 2.4E-07 49.8 7.6 127 304-449 3-135 (135)
124 PF13477 Glyco_trans_4_2: Glyc 96.4 0.055 1.2E-06 45.9 11.7 104 12-153 1-108 (139)
125 PRK10125 putative glycosyl tra 96.4 1.3 2.9E-05 45.2 27.4 115 304-443 242-365 (405)
126 COG1817 Uncharacterized protei 96.2 1.3 2.8E-05 42.4 26.7 104 19-153 8-113 (346)
127 KOG4626 O-linked N-acetylgluco 95.6 0.068 1.5E-06 55.2 9.1 120 301-427 757-887 (966)
128 PF13524 Glyco_trans_1_2: Glyc 95.5 0.16 3.5E-06 39.6 9.5 83 385-485 9-92 (92)
129 COG3914 Spy Predicted O-linked 95.4 0.19 4.2E-06 51.7 11.7 133 300-444 427-573 (620)
130 PRK14098 glycogen synthase; Pr 95.4 0.37 8E-06 50.5 14.4 137 302-448 306-450 (489)
131 TIGR02193 heptsyl_trn_I lipopo 95.3 1.9 4.1E-05 42.4 18.7 130 301-447 178-319 (319)
132 PF06722 DUF1205: Protein of u 95.3 0.02 4.4E-07 45.3 3.7 55 289-343 27-86 (97)
133 PHA01633 putative glycosyl tra 95.3 0.89 1.9E-05 44.9 15.8 86 358-449 199-307 (335)
134 PRK15490 Vi polysaccharide bio 94.9 1.1 2.4E-05 47.1 15.8 74 359-443 454-532 (578)
135 TIGR02201 heptsyl_trn_III lipo 94.6 3.1 6.6E-05 41.4 18.0 106 12-150 1-109 (344)
136 PF13579 Glyco_trans_4_4: Glyc 94.4 0.12 2.6E-06 44.4 6.7 98 25-152 5-104 (160)
137 PRK10422 lipopolysaccharide co 94.1 6.6 0.00014 39.2 19.3 107 10-150 5-114 (352)
138 PHA01630 putative group 1 glyc 92.7 7.2 0.00016 38.6 16.6 110 366-487 196-328 (331)
139 PF12000 Glyco_trans_4_3: Gkyc 92.1 1.8 3.9E-05 38.1 10.1 94 36-151 1-95 (171)
140 PF13439 Glyco_transf_4: Glyco 90.4 2 4.3E-05 37.3 9.1 31 20-50 11-41 (177)
141 TIGR02400 trehalose_OtsA alpha 89.7 3.9 8.6E-05 42.4 11.7 103 366-488 342-455 (456)
142 TIGR02195 heptsyl_trn_II lipop 89.3 24 0.00051 34.8 20.9 44 12-55 1-46 (334)
143 PF08660 Alg14: Oligosaccharid 89.0 2.1 4.6E-05 37.8 7.9 116 15-152 2-129 (170)
144 cd02067 B12-binding B12 bindin 88.5 5.2 0.00011 32.8 9.6 42 12-53 1-42 (119)
145 PLN02939 transferase, transfer 88.4 16 0.00035 41.0 15.6 83 360-448 837-930 (977)
146 PRK13932 stationary phase surv 87.8 6.3 0.00014 37.2 10.6 41 9-51 4-44 (257)
147 PF06258 Mito_fiss_Elm1: Mitoc 87.0 32 0.00069 33.7 15.8 59 369-429 221-282 (311)
148 cd03788 GT1_TPS Trehalose-6-Ph 86.9 3.5 7.6E-05 42.9 9.3 103 365-487 346-459 (460)
149 COG4370 Uncharacterized protei 86.6 2 4.3E-05 40.9 6.4 92 360-462 294-389 (412)
150 TIGR02919 accessory Sec system 86.4 14 0.00031 38.0 13.2 136 301-465 282-425 (438)
151 PRK02261 methylaspartate mutas 85.9 2.3 5E-05 36.1 6.0 48 9-56 2-49 (137)
152 cd03789 GT1_LPS_heptosyltransf 85.1 36 0.00078 32.5 19.7 44 12-55 1-46 (279)
153 PRK13933 stationary phase surv 84.8 13 0.00029 35.0 11.1 39 11-51 1-39 (253)
154 PRK14099 glycogen synthase; Pr 84.6 19 0.0004 37.8 13.4 87 359-451 349-449 (485)
155 PF02951 GSH-S_N: Prokaryotic 84.2 1.6 3.4E-05 36.0 4.1 39 11-49 1-42 (119)
156 COG0859 RfaF ADP-heptose:LPS h 83.0 51 0.0011 32.6 17.5 105 11-150 2-108 (334)
157 PRK10916 ADP-heptose:LPS hepto 82.7 13 0.00028 37.0 10.9 103 11-149 1-106 (348)
158 cd02070 corrinoid_protein_B12- 82.1 8.1 0.00018 35.1 8.4 47 9-55 81-127 (201)
159 PLN03063 alpha,alpha-trehalose 82.0 7.1 0.00015 43.6 9.4 100 372-491 371-479 (797)
160 COG0496 SurE Predicted acid ph 81.6 4.5 9.8E-05 37.8 6.5 41 11-53 1-41 (252)
161 KOG1250 Threonine/serine dehyd 80.6 66 0.0014 32.3 15.1 116 303-451 195-318 (457)
162 PF02441 Flavoprotein: Flavopr 78.3 3.1 6.7E-05 34.8 4.0 45 11-56 1-45 (129)
163 PRK13935 stationary phase surv 78.3 31 0.00066 32.6 11.0 40 11-52 1-40 (253)
164 TIGR03713 acc_sec_asp1 accesso 77.8 8.2 0.00018 40.8 7.9 91 360-466 409-506 (519)
165 TIGR01007 eps_fam capsular exo 77.5 45 0.00099 30.1 11.9 40 11-50 17-58 (204)
166 PRK00346 surE 5'(3')-nucleotid 77.4 24 0.00051 33.3 10.0 40 11-52 1-40 (250)
167 PF07015 VirC1: VirC1 protein; 76.5 12 0.00026 34.6 7.6 37 19-55 11-47 (231)
168 COG4088 Predicted nucleotide k 75.3 49 0.0011 30.2 10.7 34 13-46 4-37 (261)
169 PF02374 ArsA_ATPase: Anion-tr 74.9 5.5 0.00012 38.9 5.3 40 12-51 2-42 (305)
170 COG1618 Predicted nucleotide k 74.7 13 0.00029 32.2 6.8 56 10-75 5-60 (179)
171 COG0003 ArsA Predicted ATPase 74.5 25 0.00054 34.5 9.7 41 11-51 2-43 (322)
172 COG0052 RpsB Ribosomal protein 74.5 24 0.00051 32.9 8.8 30 124-153 157-188 (252)
173 cd00550 ArsA_ATPase Oxyanion-t 74.1 21 0.00046 33.8 9.0 43 13-56 3-45 (254)
174 TIGR00715 precor6x_red precorr 73.9 12 0.00026 35.5 7.1 35 11-50 1-35 (256)
175 COG2894 MinD Septum formation 73.5 13 0.00027 34.1 6.6 36 12-47 3-40 (272)
176 TIGR03029 EpsG chain length de 73.3 56 0.0012 31.1 11.9 38 10-47 102-141 (274)
177 TIGR00087 surE 5'/3'-nucleotid 72.9 22 0.00047 33.4 8.5 40 11-53 1-41 (244)
178 PF05159 Capsule_synth: Capsul 72.8 17 0.00037 34.7 8.1 42 362-406 185-226 (269)
179 cd03793 GT1_Glycogen_synthase_ 72.8 19 0.0004 38.2 8.7 78 369-450 467-553 (590)
180 COG0438 RfaG Glycosyltransfera 72.5 89 0.0019 29.6 16.7 81 360-451 257-344 (381)
181 PF02310 B12-binding: B12 bind 72.2 10 0.00022 30.9 5.6 43 11-53 1-43 (121)
182 smart00851 MGS MGS-like domain 71.9 40 0.00087 25.9 8.6 27 27-55 2-28 (90)
183 PRK00090 bioD dithiobiotin syn 71.4 45 0.00099 30.5 10.4 33 13-45 2-35 (222)
184 PF01975 SurE: Survival protei 69.0 6.9 0.00015 35.4 4.1 41 11-52 1-41 (196)
185 PRK02797 4-alpha-L-fucosyltran 68.9 1.2E+02 0.0026 29.6 13.2 82 360-448 206-293 (322)
186 PRK14501 putative bifunctional 68.8 15 0.00033 40.7 7.6 112 364-491 346-464 (726)
187 PRK11519 tyrosine kinase; Prov 67.9 98 0.0021 34.3 13.6 40 10-49 525-566 (719)
188 COG2185 Sbm Methylmalonyl-CoA 67.4 12 0.00027 31.7 5.0 44 9-52 11-54 (143)
189 PF04464 Glyphos_transf: CDP-G 66.7 13 0.00027 37.3 6.1 113 360-484 252-368 (369)
190 KOG2941 Beta-1,4-mannosyltrans 66.5 1.1E+02 0.0023 30.3 11.6 128 8-157 10-142 (444)
191 COG1703 ArgK Putative periplas 66.1 31 0.00066 33.3 7.9 39 12-50 53-91 (323)
192 PF12146 Hydrolase_4: Putative 65.7 19 0.00041 27.1 5.4 35 11-45 16-50 (79)
193 cd01425 RPS2 Ribosomal protein 65.5 64 0.0014 29.0 9.7 33 122-154 126-160 (193)
194 PRK08305 spoVFB dipicolinate s 65.4 12 0.00025 33.9 4.8 43 10-52 5-47 (196)
195 PF00551 Formyl_trans_N: Formy 65.1 85 0.0018 27.8 10.4 27 11-40 1-27 (181)
196 PRK06718 precorrin-2 dehydroge 64.4 1.1E+02 0.0024 27.7 13.3 148 301-469 10-165 (202)
197 PRK12311 rpsB 30S ribosomal pr 62.0 42 0.00092 32.9 8.3 32 123-154 152-185 (326)
198 TIGR00347 bioD dethiobiotin sy 61.0 78 0.0017 27.3 9.4 26 19-44 7-32 (166)
199 TIGR02370 pyl_corrinoid methyl 60.7 22 0.00047 32.2 5.8 48 9-56 83-130 (197)
200 cd02071 MM_CoA_mut_B12_BD meth 60.2 22 0.00047 29.3 5.3 42 12-53 1-42 (122)
201 cd01421 IMPCH Inosine monophos 60.0 53 0.0012 29.3 7.8 92 25-139 11-106 (187)
202 COG2910 Putative NADH-flavin r 59.6 12 0.00026 33.2 3.7 34 11-48 1-34 (211)
203 TIGR03371 cellulose_yhjQ cellu 59.3 1.5E+02 0.0032 27.4 11.9 32 18-49 10-41 (246)
204 PRK13931 stationary phase surv 59.3 45 0.00097 31.7 7.8 27 26-52 15-44 (261)
205 TIGR00313 cobQ cobyric acid sy 57.9 1.6E+02 0.0034 30.9 12.3 27 21-47 10-36 (475)
206 PRK05986 cob(I)alamin adenolsy 56.7 78 0.0017 28.5 8.4 102 10-134 22-126 (191)
207 PTZ00445 p36-lilke protein; Pr 56.2 50 0.0011 30.2 7.1 115 22-151 74-205 (219)
208 PF01075 Glyco_transf_9: Glyco 55.3 31 0.00068 32.1 6.2 94 301-404 104-208 (247)
209 TIGR03018 pepcterm_TyrKin exop 55.3 1.6E+02 0.0035 26.6 11.5 40 10-49 34-76 (207)
210 PF02571 CbiJ: Precorrin-6x re 55.0 40 0.00087 31.8 6.7 29 11-45 1-29 (249)
211 cd07038 TPP_PYR_PDC_IPDC_like 54.8 1.1E+02 0.0023 26.6 9.0 27 379-405 60-92 (162)
212 KOG3339 Predicted glycosyltran 54.6 1.2E+02 0.0025 27.1 8.7 29 8-37 36-64 (211)
213 PRK05920 aromatic acid decarbo 54.5 23 0.0005 32.3 4.8 45 10-55 3-47 (204)
214 cd07039 TPP_PYR_POX Pyrimidine 53.9 1.5E+02 0.0032 25.8 10.4 28 376-405 63-96 (164)
215 cd02069 methionine_synthase_B1 53.3 36 0.00078 31.2 6.0 47 9-55 87-133 (213)
216 PF01210 NAD_Gly3P_dh_N: NAD-d 53.1 11 0.00023 32.8 2.4 32 12-48 1-32 (157)
217 PF01075 Glyco_transf_9: Glyco 52.8 1.6E+02 0.0034 27.3 10.6 99 10-153 105-211 (247)
218 PRK00784 cobyric acid synthase 52.7 1.8E+02 0.0039 30.5 11.8 34 13-46 5-39 (488)
219 cd00561 CobA_CobO_BtuR ATP:cor 52.6 1.6E+02 0.0034 25.7 10.6 34 12-45 4-37 (159)
220 COG1797 CobB Cobyrinic acid a, 52.4 15 0.00033 37.1 3.6 33 13-45 3-36 (451)
221 TIGR01501 MthylAspMutase methy 51.7 43 0.00092 28.2 5.6 45 11-55 2-46 (134)
222 PRK01077 cobyrinic acid a,c-di 51.6 49 0.0011 34.3 7.4 34 13-46 6-40 (451)
223 cd03114 ArgK-like The function 51.6 1.5E+02 0.0033 25.2 10.4 35 13-47 2-36 (148)
224 cd01423 MGS_CPS_I_III Methylgl 51.3 1.2E+02 0.0027 24.4 8.4 85 23-149 11-106 (116)
225 KOG0780 Signal recognition par 51.1 42 0.00092 33.5 6.2 44 8-51 99-142 (483)
226 COG0541 Ffh Signal recognition 50.9 60 0.0013 33.1 7.4 43 9-51 99-141 (451)
227 PF06925 MGDG_synth: Monogalac 50.7 38 0.00083 29.6 5.6 22 23-44 1-25 (169)
228 PLN02939 transferase, transfer 50.1 34 0.00074 38.6 6.1 42 7-48 478-525 (977)
229 PF09314 DUF1972: Domain of un 49.7 1.6E+02 0.0035 26.3 9.3 46 21-74 16-62 (185)
230 TIGR02398 gluc_glyc_Psyn gluco 49.3 1.8E+02 0.0039 30.5 10.9 108 363-490 365-483 (487)
231 TIGR00355 purH phosphoribosyla 49.0 74 0.0016 33.1 7.9 44 25-80 11-56 (511)
232 COG1066 Sms Predicted ATP-depe 48.7 29 0.00063 35.0 4.8 43 11-54 94-136 (456)
233 COG1484 DnaC DNA replication p 48.7 34 0.00074 32.4 5.2 47 10-56 105-151 (254)
234 PRK14099 glycogen synthase; Pr 48.2 29 0.00062 36.4 5.1 40 9-48 2-47 (485)
235 PF01591 6PF2K: 6-phosphofruct 48.1 1.6E+02 0.0034 27.3 9.3 114 8-151 10-129 (222)
236 PRK07313 phosphopantothenoylcy 48.0 28 0.0006 31.1 4.3 42 12-54 3-44 (182)
237 PRK06321 replicative DNA helic 47.7 2E+02 0.0043 30.1 11.0 42 13-54 229-271 (472)
238 PRK10964 ADP-heptose:LPS hepto 47.6 29 0.00063 34.0 4.8 44 11-54 1-46 (322)
239 TIGR00421 ubiX_pad polyprenyl 47.5 25 0.00054 31.3 3.9 42 12-54 1-42 (181)
240 COG2861 Uncharacterized protei 47.4 63 0.0014 30.0 6.4 40 103-150 137-179 (250)
241 PF00731 AIRC: AIR carboxylase 47.4 1.8E+02 0.004 25.0 10.4 139 304-468 2-148 (150)
242 PRK10916 ADP-heptose:LPS hepto 47.1 76 0.0017 31.4 7.8 96 301-404 179-286 (348)
243 PF00862 Sucrose_synth: Sucros 46.4 27 0.00059 36.1 4.3 117 20-153 295-433 (550)
244 PF04413 Glycos_transf_N: 3-De 46.0 76 0.0016 28.4 6.8 98 12-150 22-124 (186)
245 PRK09841 cryptic autophosphory 45.8 2.1E+02 0.0046 31.8 11.6 40 10-49 530-571 (726)
246 PRK02155 ppnK NAD(+)/NADH kina 45.8 37 0.00081 32.8 5.1 55 375-450 62-120 (291)
247 TIGR02852 spore_dpaB dipicolin 45.7 30 0.00066 31.0 4.1 39 12-50 2-40 (187)
248 PF08433 KTI12: Chromatin asso 45.6 1.8E+02 0.0039 27.7 9.7 103 13-159 4-112 (270)
249 PRK10416 signal recognition pa 45.6 1.3E+02 0.0028 29.6 8.9 41 10-50 114-154 (318)
250 PRK13789 phosphoribosylamine-- 45.4 66 0.0014 33.1 7.1 36 9-49 3-38 (426)
251 PF07429 Glyco_transf_56: 4-al 44.7 3.3E+02 0.0071 27.1 13.0 82 360-448 245-332 (360)
252 PF03808 Glyco_tran_WecB: Glyc 44.6 2.2E+02 0.0047 25.0 10.2 97 27-157 37-138 (172)
253 TIGR01761 thiaz-red thiazoliny 44.3 1.4E+02 0.0029 29.8 8.8 114 321-450 15-137 (343)
254 TIGR02655 circ_KaiC circadian 44.1 2.5E+02 0.0055 29.4 11.3 46 10-55 263-308 (484)
255 PRK04885 ppnK inorganic polyph 44.0 44 0.00095 31.9 5.1 54 376-450 35-94 (265)
256 PRK01911 ppnK inorganic polyph 43.6 45 0.00098 32.3 5.3 57 373-450 61-121 (292)
257 cd00532 MGS-like MGS-like doma 43.5 1.7E+02 0.0037 23.5 8.8 32 23-56 10-41 (112)
258 PF04127 DFP: DNA / pantothena 43.2 25 0.00055 31.5 3.2 22 27-48 32-53 (185)
259 PRK10867 signal recognition pa 43.2 72 0.0015 32.8 6.9 43 10-52 100-143 (433)
260 PRK05632 phosphate acetyltrans 43.2 2.9E+02 0.0063 30.4 12.0 35 12-46 4-39 (684)
261 cd07035 TPP_PYR_POX_like Pyrim 43.2 1.3E+02 0.0028 25.5 7.8 28 377-406 60-93 (155)
262 TIGR01005 eps_transp_fam exopo 43.1 2.4E+02 0.0052 31.5 11.6 39 11-49 546-586 (754)
263 TIGR03878 thermo_KaiC_2 KaiC d 43.0 1.3E+02 0.0029 28.4 8.3 40 11-50 37-76 (259)
264 TIGR00379 cobB cobyrinic acid 42.9 92 0.002 32.3 7.7 34 13-46 2-36 (449)
265 COG1435 Tdk Thymidine kinase [ 42.4 2.6E+02 0.0057 25.3 9.5 38 12-49 5-43 (201)
266 COG0279 GmhA Phosphoheptose is 42.0 99 0.0021 27.0 6.4 46 455-500 23-77 (176)
267 PF09001 DUF1890: Domain of un 41.6 37 0.0008 28.5 3.6 42 15-56 3-45 (139)
268 PRK10490 sensor protein KdpD; 41.5 36 0.00078 38.8 4.8 38 10-47 24-61 (895)
269 PRK10964 ADP-heptose:LPS hepto 41.5 1.4E+02 0.003 29.1 8.6 131 303-448 179-321 (322)
270 PLN02935 Bifunctional NADH kin 40.5 35 0.00077 35.4 4.1 55 375-450 261-319 (508)
271 cd02065 B12-binding_like B12 b 40.5 65 0.0014 26.1 5.2 43 13-55 2-44 (125)
272 TIGR00959 ffh signal recogniti 40.4 94 0.002 31.9 7.2 43 10-52 99-142 (428)
273 TIGR02195 heptsyl_trn_II lipop 39.6 3E+02 0.0065 26.9 10.7 98 12-152 176-278 (334)
274 KOG0853 Glycosyltransferase [C 39.6 31 0.00067 35.8 3.5 61 390-460 381-441 (495)
275 PLN02929 NADH kinase 39.5 49 0.0011 32.1 4.7 66 376-450 64-138 (301)
276 PRK11823 DNA repair protein Ra 39.0 1E+02 0.0022 31.9 7.3 44 11-54 81-124 (446)
277 PRK04539 ppnK inorganic polyph 38.5 78 0.0017 30.7 6.0 57 373-450 65-125 (296)
278 PRK01231 ppnK inorganic polyph 38.5 54 0.0012 31.8 4.9 54 376-450 62-119 (295)
279 TIGR01011 rpsB_bact ribosomal 38.5 2.3E+02 0.005 26.2 8.9 31 123-153 155-187 (225)
280 PRK06522 2-dehydropantoate 2-r 38.4 45 0.00097 32.2 4.5 31 11-46 1-31 (304)
281 TIGR01281 DPOR_bchL light-inde 38.0 54 0.0012 31.0 4.9 36 11-46 1-36 (268)
282 PRK06029 3-octaprenyl-4-hydrox 37.6 60 0.0013 29.1 4.7 43 12-55 3-46 (185)
283 PF08323 Glyco_transf_5: Starc 37.5 26 0.00057 32.9 2.6 26 23-48 18-43 (245)
284 CHL00072 chlL photochlorophyll 37.5 60 0.0013 31.4 5.1 38 11-48 1-38 (290)
285 cd01121 Sms Sms (bacterial rad 37.5 3.8E+02 0.0083 26.9 10.9 42 12-53 84-125 (372)
286 cd02032 Bchl_like This family 37.5 55 0.0012 31.0 4.8 37 11-47 1-37 (267)
287 PF07355 GRDB: Glycine/sarcosi 37.4 60 0.0013 32.0 5.0 28 123-150 80-117 (349)
288 TIGR02113 coaC_strep phosphopa 37.3 47 0.001 29.5 4.0 42 12-54 2-43 (177)
289 PF06506 PrpR_N: Propionate ca 37.3 45 0.00098 29.4 3.9 32 376-408 32-63 (176)
290 PTZ00318 NADH dehydrogenase-li 37.2 44 0.00094 34.3 4.3 45 1-50 1-45 (424)
291 PRK00881 purH bifunctional pho 37.2 1.6E+02 0.0035 30.9 8.2 45 24-80 14-60 (513)
292 PRK12342 hypothetical protein; 37.1 62 0.0013 30.6 4.9 31 123-153 109-145 (254)
293 cd03115 SRP The signal recogni 37.1 1.6E+02 0.0035 25.5 7.5 39 13-51 3-41 (173)
294 PRK05647 purN phosphoribosylgl 37.0 2.3E+02 0.0049 25.7 8.5 33 11-46 2-36 (200)
295 PRK06249 2-dehydropantoate 2-r 36.7 45 0.00099 32.5 4.2 35 9-48 4-38 (313)
296 KOG0832 Mitochondrial/chloropl 36.5 72 0.0016 29.3 4.9 114 20-155 90-207 (251)
297 PF05225 HTH_psq: helix-turn-h 36.4 63 0.0014 21.3 3.5 26 435-462 1-26 (45)
298 TIGR02329 propionate_PrpR prop 36.4 1.4E+02 0.003 31.7 7.9 41 104-153 132-172 (526)
299 COG0287 TyrA Prephenate dehydr 36.2 2.7E+02 0.0059 26.7 9.3 42 10-56 3-44 (279)
300 PRK03359 putative electron tra 36.2 60 0.0013 30.7 4.7 31 123-153 112-148 (256)
301 COG0859 RfaF ADP-heptose:LPS h 36.1 1.7E+02 0.0037 28.8 8.2 99 11-153 176-279 (334)
302 PRK10353 3-methyl-adenine DNA 36.1 1.1E+02 0.0024 27.4 6.0 77 403-483 22-119 (187)
303 TIGR00345 arsA arsenite-activa 36.0 1.7E+02 0.0037 28.1 8.0 23 28-50 3-25 (284)
304 PRK12921 2-dehydropantoate 2-r 36.0 47 0.001 32.1 4.2 31 11-46 1-31 (305)
305 COG1327 Predicted transcriptio 35.7 55 0.0012 27.9 3.8 106 382-491 31-148 (156)
306 CHL00067 rps2 ribosomal protei 35.6 2.4E+02 0.0053 26.2 8.6 32 123-154 161-194 (230)
307 PRK06849 hypothetical protein; 35.5 71 0.0015 32.3 5.5 36 9-48 3-38 (389)
308 TIGR02699 archaeo_AfpA archaeo 35.5 62 0.0014 28.6 4.4 40 14-54 3-44 (174)
309 TIGR00640 acid_CoA_mut_C methy 35.4 1.1E+02 0.0024 25.6 5.8 40 9-48 1-40 (132)
310 PF06506 PrpR_N: Propionate ca 35.2 44 0.00096 29.5 3.5 114 22-154 17-153 (176)
311 PRK03372 ppnK inorganic polyph 35.2 63 0.0014 31.5 4.8 55 375-450 71-129 (306)
312 PLN02891 IMP cyclohydrolase 35.1 1.6E+02 0.0034 31.0 7.7 96 11-131 23-122 (547)
313 cd01141 TroA_d Periplasmic bin 34.8 54 0.0012 29.0 4.1 39 103-151 59-99 (186)
314 cd01974 Nitrogenase_MoFe_beta 34.7 3.2E+02 0.007 28.1 10.2 25 123-150 377-401 (435)
315 PRK05299 rpsB 30S ribosomal pr 34.3 2.3E+02 0.005 26.9 8.3 31 123-153 157-189 (258)
316 TIGR00416 sms DNA repair prote 34.2 1.7E+02 0.0036 30.4 8.0 43 12-54 96-138 (454)
317 cd01424 MGS_CPS_II Methylglyox 34.1 2.4E+02 0.0052 22.4 9.2 84 22-149 10-100 (110)
318 PRK02649 ppnK inorganic polyph 34.0 64 0.0014 31.5 4.6 55 375-450 67-125 (305)
319 PRK03378 ppnK inorganic polyph 33.6 79 0.0017 30.6 5.2 57 373-450 60-120 (292)
320 TIGR00521 coaBC_dfp phosphopan 33.2 69 0.0015 32.5 4.9 45 10-55 3-47 (390)
321 TIGR00173 menD 2-succinyl-5-en 33.1 3.3E+02 0.0071 28.0 10.0 27 376-404 63-95 (432)
322 PRK13604 luxD acyl transferase 33.0 86 0.0019 30.6 5.3 36 9-44 35-70 (307)
323 TIGR00708 cobA cob(I)alamin ad 33.0 3.5E+02 0.0075 23.9 10.8 34 11-44 6-39 (173)
324 TIGR03880 KaiC_arch_3 KaiC dom 32.7 1.8E+02 0.0039 26.5 7.4 46 11-56 17-62 (224)
325 PRK13869 plasmid-partitioning 32.6 86 0.0019 32.0 5.5 40 9-48 119-160 (405)
326 PRK14098 glycogen synthase; Pr 32.4 66 0.0014 33.8 4.8 39 10-48 5-49 (489)
327 TIGR02700 flavo_MJ0208 archaeo 32.3 75 0.0016 29.6 4.7 43 13-55 2-46 (234)
328 PF02776 TPP_enzyme_N: Thiamin 32.1 1.5E+02 0.0032 25.9 6.3 29 376-406 64-98 (172)
329 PLN02470 acetolactate synthase 32.0 1.3E+02 0.0029 32.3 7.2 90 308-405 2-109 (585)
330 COG1154 Dxs Deoxyxylulose-5-ph 31.9 4.3E+02 0.0094 28.3 10.3 52 385-448 565-623 (627)
331 cd01018 ZntC Metal binding pro 31.8 4.3E+02 0.0093 25.0 10.0 43 105-153 205-249 (266)
332 TIGR00639 PurN phosphoribosylg 31.6 3.8E+02 0.0083 24.0 9.4 33 11-46 1-35 (190)
333 TIGR01182 eda Entner-Doudoroff 31.6 4E+02 0.0087 24.2 9.8 27 123-149 80-106 (204)
334 PF13450 NAD_binding_8: NAD(P) 31.4 58 0.0013 23.6 3.0 20 28-47 9-28 (68)
335 PRK06732 phosphopantothenate-- 31.3 60 0.0013 30.1 3.9 20 27-46 29-48 (229)
336 PF10727 Rossmann-like: Rossma 31.1 79 0.0017 26.3 4.1 43 1-48 1-43 (127)
337 COG2120 Uncharacterized protei 30.8 97 0.0021 28.9 5.2 43 3-45 3-45 (237)
338 TIGR00750 lao LAO/AO transport 30.8 4.6E+02 0.01 25.3 10.1 39 11-49 35-73 (300)
339 COG0489 Mrp ATPases involved i 30.8 2E+02 0.0044 27.3 7.4 46 11-56 57-104 (265)
340 PF04244 DPRP: Deoxyribodipyri 30.7 67 0.0015 29.7 4.0 25 23-47 47-71 (224)
341 PF10649 DUF2478: Protein of u 30.2 3.7E+02 0.008 23.4 8.9 112 15-153 3-132 (159)
342 KOG1209 1-Acyl dihydroxyaceton 30.1 63 0.0014 29.6 3.5 35 1-43 1-37 (289)
343 PRK06276 acetolactate synthase 30.1 2.7E+02 0.0059 29.9 9.1 27 377-405 64-96 (586)
344 COG0132 BioD Dethiobiotin synt 29.8 4.5E+02 0.0098 24.3 11.7 36 11-46 2-39 (223)
345 PRK04328 hypothetical protein; 29.8 3.2E+02 0.0069 25.6 8.6 45 10-54 23-67 (249)
346 PRK07773 replicative DNA helic 29.2 3.7E+02 0.0081 30.7 10.4 43 12-54 219-262 (886)
347 PF02702 KdpD: Osmosensitive K 29.2 94 0.002 28.2 4.4 38 10-47 5-42 (211)
348 PRK11199 tyrA bifunctional cho 29.1 3.9E+02 0.0084 26.9 9.5 33 10-47 98-131 (374)
349 PRK08229 2-dehydropantoate 2-r 28.8 68 0.0015 31.7 4.0 33 11-48 3-35 (341)
350 PF02826 2-Hacid_dh_C: D-isome 28.7 3.9E+02 0.0084 23.4 8.5 105 301-444 36-142 (178)
351 PRK07710 acetolactate synthase 28.7 2.8E+02 0.006 29.7 8.9 28 376-405 78-111 (571)
352 PF00070 Pyr_redox: Pyridine n 28.6 80 0.0017 23.4 3.5 23 26-48 10-32 (80)
353 PLN02778 3,5-epimerase/4-reduc 28.5 92 0.002 30.1 4.8 38 1-44 1-39 (298)
354 PRK14619 NAD(P)H-dependent gly 28.4 72 0.0016 31.1 4.0 33 10-47 4-36 (308)
355 cd03789 GT1_LPS_heptosyltransf 28.1 3.2E+02 0.007 25.8 8.5 87 25-153 140-226 (279)
356 cd07025 Peptidase_S66 LD-Carbo 27.9 1.3E+02 0.0028 28.9 5.6 76 313-407 44-121 (282)
357 TIGR02237 recomb_radB DNA repa 27.6 4.5E+02 0.0097 23.5 9.5 45 11-55 13-58 (209)
358 PRK03501 ppnK inorganic polyph 27.6 1.3E+02 0.0028 28.6 5.5 54 377-450 40-98 (264)
359 PF05762 VWA_CoxE: VWA domain 27.4 1.3E+02 0.0027 27.8 5.3 38 10-47 150-188 (222)
360 TIGR00118 acolac_lg acetolacta 27.3 3.7E+02 0.008 28.7 9.5 27 379-405 65-97 (558)
361 PRK04761 ppnK inorganic polyph 27.3 50 0.0011 31.0 2.6 28 377-406 26-57 (246)
362 TIGR01918 various_sel_PB selen 27.3 1.1E+02 0.0023 31.2 4.9 45 382-428 348-394 (431)
363 TIGR01470 cysG_Nterm siroheme 27.3 4.7E+02 0.01 23.7 12.1 148 301-469 9-165 (205)
364 TIGR01917 gly_red_sel_B glycin 27.2 1.1E+02 0.0023 31.2 4.9 40 103-151 65-114 (431)
365 PRK05579 bifunctional phosphop 27.1 98 0.0021 31.5 4.8 45 10-55 6-50 (399)
366 PRK13982 bifunctional SbtC-lik 27.0 78 0.0017 32.9 4.1 40 9-48 255-306 (475)
367 PRK11914 diacylglycerol kinase 27.0 3.3E+02 0.0072 26.3 8.5 28 377-406 65-96 (306)
368 PRK13057 putative lipid kinase 27.0 1.2E+02 0.0027 29.0 5.4 30 375-406 49-82 (287)
369 cd02072 Glm_B12_BD B12 binding 27.0 1.5E+02 0.0032 24.8 5.0 44 12-55 1-44 (128)
370 PRK04148 hypothetical protein; 26.6 1.3E+02 0.0028 25.3 4.6 35 9-49 16-50 (134)
371 PRK13011 formyltetrahydrofolat 26.6 5.9E+02 0.013 24.5 10.3 106 8-153 87-196 (286)
372 PF01081 Aldolase: KDPG and KH 26.5 4.8E+02 0.01 23.5 9.9 32 123-154 80-111 (196)
373 COG2874 FlaH Predicted ATPases 26.5 88 0.0019 28.7 3.8 37 20-56 38-75 (235)
374 COG2210 Peroxiredoxin family p 26.5 1.3E+02 0.0028 25.4 4.5 36 10-46 4-39 (137)
375 PF14626 RNase_Zc3h12a_2: Zc3h 26.5 64 0.0014 26.3 2.6 30 24-53 9-38 (122)
376 PRK00207 sulfur transfer compl 26.4 1.4E+02 0.0031 24.8 4.9 36 11-46 1-40 (128)
377 TIGR01012 Sa_S2_E_A ribosomal 26.4 87 0.0019 28.3 3.8 31 123-153 108-140 (196)
378 PF02558 ApbA: Ketopantoate re 26.3 1E+02 0.0022 26.0 4.2 27 29-55 12-38 (151)
379 PRK08322 acetolactate synthase 26.2 3.8E+02 0.0082 28.4 9.4 27 379-405 64-96 (547)
380 TIGR01380 glut_syn glutathione 26.1 81 0.0018 30.8 3.9 40 11-50 1-43 (312)
381 PRK01185 ppnK inorganic polyph 26.1 1.2E+02 0.0026 29.0 4.9 54 376-450 52-106 (271)
382 COG0503 Apt Adenine/guanine ph 26.1 1.2E+02 0.0025 27.0 4.6 28 123-150 53-82 (179)
383 PF04493 Endonuclease_5: Endon 25.9 89 0.0019 28.5 3.8 40 104-150 77-123 (206)
384 PRK04020 rps2P 30S ribosomal p 25.6 91 0.002 28.4 3.8 31 123-153 114-146 (204)
385 KOG1111 N-acetylglucosaminyltr 25.5 5.7E+02 0.012 25.6 9.3 46 357-404 249-301 (426)
386 TIGR01917 gly_red_sel_B glycin 25.5 1.4E+02 0.0029 30.5 5.2 46 107-158 326-378 (431)
387 TIGR01918 various_sel_PB selen 25.4 1.3E+02 0.0028 30.6 5.1 46 106-157 325-377 (431)
388 PF01695 IstB_IS21: IstB-like 25.4 1E+02 0.0022 27.3 4.1 44 10-53 47-90 (178)
389 PRK06027 purU formyltetrahydro 25.2 3.8E+02 0.0083 25.8 8.3 109 8-153 87-196 (286)
390 COG2084 MmsB 3-hydroxyisobutyr 25.1 1E+02 0.0022 29.8 4.2 32 11-47 1-32 (286)
391 PRK06270 homoserine dehydrogen 25.0 5E+02 0.011 25.7 9.3 59 369-428 80-150 (341)
392 TIGR00745 apbA_panE 2-dehydrop 24.9 92 0.002 29.7 4.1 25 29-53 5-29 (293)
393 PF03308 ArgK: ArgK protein; 24.9 1.1E+02 0.0024 28.9 4.3 41 10-50 29-69 (266)
394 PRK06719 precorrin-2 dehydroge 24.9 1.2E+02 0.0026 26.2 4.4 33 10-47 13-45 (157)
395 PRK00048 dihydrodipicolinate r 24.8 5.9E+02 0.013 23.9 9.9 74 368-446 52-131 (257)
396 PF06564 YhjQ: YhjQ protein; 24.7 1.2E+02 0.0026 28.5 4.5 31 17-47 9-39 (243)
397 TIGR02853 spore_dpaA dipicolin 24.7 1.5E+02 0.0032 28.7 5.3 23 25-47 11-33 (287)
398 cd06559 Endonuclease_V Endonuc 24.3 71 0.0015 29.2 2.9 39 105-150 82-127 (208)
399 PRK07525 sulfoacetaldehyde ace 24.0 4.7E+02 0.01 28.1 9.6 27 379-405 69-101 (588)
400 cd02034 CooC The accessory pro 23.8 1.8E+02 0.0038 23.7 4.9 37 12-48 1-37 (116)
401 PF10933 DUF2827: Protein of u 23.8 5.2E+02 0.011 25.8 8.8 101 362-486 255-362 (364)
402 PRK09423 gldA glycerol dehydro 23.8 1.7E+02 0.0037 29.3 5.8 95 290-408 19-118 (366)
403 PLN02496 probable phosphopanto 23.2 1.1E+02 0.0025 27.8 4.0 45 9-55 18-62 (209)
404 PF12695 Abhydrolase_5: Alpha/ 23.2 1.4E+02 0.0031 24.4 4.5 34 13-46 1-34 (145)
405 PRK03708 ppnK inorganic polyph 23.2 66 0.0014 30.9 2.6 54 376-450 57-113 (277)
406 COG0240 GpsA Glycerol-3-phosph 23.0 1.2E+02 0.0025 29.9 4.2 33 11-48 2-34 (329)
407 PRK04946 hypothetical protein; 22.9 80 0.0017 28.1 2.9 58 319-392 111-169 (181)
408 PRK02231 ppnK inorganic polyph 22.9 83 0.0018 30.1 3.2 57 371-448 37-97 (272)
409 CHL00076 chlB photochlorophyll 22.9 1.2E+02 0.0025 32.1 4.6 26 123-151 374-399 (513)
410 PRK13982 bifunctional SbtC-lik 22.8 1.4E+02 0.0029 31.2 4.9 45 10-55 70-114 (475)
411 COG3140 Uncharacterized protei 22.8 2.4E+02 0.0052 19.5 4.3 36 455-494 13-48 (60)
412 PF03721 UDPG_MGDP_dh_N: UDP-g 22.8 1.3E+02 0.0028 26.8 4.3 32 11-47 1-32 (185)
413 PRK14077 pnk inorganic polypho 22.7 73 0.0016 30.7 2.8 57 373-450 61-121 (287)
414 PLN02695 GDP-D-mannose-3',5'-e 22.7 1.4E+02 0.0031 29.8 5.1 35 8-46 19-53 (370)
415 TIGR00147 lipid kinase, YegS/R 22.7 2.2E+02 0.0047 27.3 6.2 28 377-406 58-91 (293)
416 PF10087 DUF2325: Uncharacteri 22.6 2.1E+02 0.0045 22.3 5.0 35 123-157 48-88 (97)
417 cd01983 Fer4_NifH The Fer4_Nif 22.5 2E+02 0.0043 21.4 4.9 33 13-45 2-34 (99)
418 PF01372 Melittin: Melittin; 22.5 11 0.00023 21.1 -1.6 17 387-403 1-17 (26)
419 PF03701 UPF0181: Uncharacteri 22.4 2.3E+02 0.0049 19.3 4.2 33 455-491 13-45 (51)
420 PF02780 Transketolase_C: Tran 22.3 1.6E+02 0.0035 24.0 4.5 36 9-46 8-43 (124)
421 PF01497 Peripla_BP_2: Peripla 22.3 1.2E+02 0.0026 27.7 4.2 42 103-154 50-93 (238)
422 PRK14076 pnk inorganic polypho 22.3 1.5E+02 0.0032 31.9 5.3 54 376-450 348-405 (569)
423 KOG3446 NADH:ubiquinone oxidor 22.2 1.8E+02 0.0038 22.2 4.0 44 400-448 51-95 (97)
424 PRK13059 putative lipid kinase 22.2 4.1E+02 0.009 25.5 8.0 28 377-406 57-90 (295)
425 PF00282 Pyridoxal_deC: Pyrido 22.2 1.8E+02 0.0039 29.2 5.7 70 378-449 103-191 (373)
426 COG0801 FolK 7,8-dihydro-6-hyd 22.1 1.7E+02 0.0037 25.5 4.6 29 304-332 3-31 (160)
427 TIGR03453 partition_RepA plasm 22.1 1.4E+02 0.003 30.2 4.8 41 8-48 101-143 (387)
428 KOG4117 Heat shock factor bind 22.1 3E+02 0.0066 19.6 6.4 63 433-501 11-73 (73)
429 cd08551 Fe-ADH iron-containing 22.0 1.7E+02 0.0038 29.2 5.5 43 292-336 14-56 (370)
430 TIGR02201 heptsyl_trn_III lipo 21.9 6.1E+02 0.013 24.8 9.4 28 123-152 260-287 (344)
431 TIGR02482 PFKA_ATP 6-phosphofr 21.9 91 0.002 30.3 3.3 37 373-409 86-126 (301)
432 PRK08155 acetolactate synthase 21.8 3.7E+02 0.0079 28.8 8.2 78 318-405 14-109 (564)
433 COG3195 Uncharacterized protei 21.6 3.9E+02 0.0085 23.3 6.5 99 365-467 60-164 (176)
434 PRK02645 ppnK inorganic polyph 21.6 74 0.0016 31.0 2.6 29 376-406 57-89 (305)
435 cd07037 TPP_PYR_MenD Pyrimidin 21.5 74 0.0016 27.7 2.4 28 376-405 60-93 (162)
436 cd07766 DHQ_Fe-ADH Dehydroquin 21.5 2.4E+02 0.0052 27.7 6.4 30 376-408 78-114 (332)
437 PRK07114 keto-hydroxyglutarate 21.5 6.5E+02 0.014 23.2 9.4 28 123-150 91-118 (222)
438 PRK02910 light-independent pro 21.5 1.4E+02 0.003 31.7 4.8 26 123-151 362-387 (519)
439 cd01965 Nitrogenase_MoFe_beta_ 21.5 1.3E+02 0.0027 31.0 4.5 37 105-150 359-395 (428)
440 TIGR02853 spore_dpaA dipicolin 21.4 6.1E+02 0.013 24.4 8.9 73 302-393 152-224 (287)
441 cd08194 Fe-ADH6 Iron-containin 21.3 1.8E+02 0.0039 29.2 5.5 43 292-336 14-56 (375)
442 TIGR00640 acid_CoA_mut_C methy 21.3 1.4E+02 0.0029 25.1 3.8 38 9-46 52-90 (132)
443 COG0569 TrkA K+ transport syst 21.2 1.1E+02 0.0025 28.2 3.7 32 11-47 1-32 (225)
444 TIGR01278 DPOR_BchB light-inde 21.1 1.4E+02 0.0029 31.6 4.7 26 123-151 364-389 (511)
445 PF00185 OTCace: Aspartate/orn 21.1 1.9E+02 0.0041 25.0 4.9 38 10-50 2-39 (158)
446 cd01147 HemV-2 Metal binding p 21.1 1.4E+02 0.003 27.9 4.4 41 103-153 64-107 (262)
447 KOG0081 GTPase Rab27, small G 20.9 2.1E+02 0.0044 24.9 4.7 49 106-156 109-167 (219)
448 PRK06048 acetolactate synthase 20.9 4.6E+02 0.01 28.0 8.8 28 376-405 70-103 (561)
449 COG0299 PurN Folate-dependent 20.9 2.5E+02 0.0054 25.3 5.5 29 123-151 29-57 (200)
450 PRK10037 cell division protein 20.9 1.5E+02 0.0032 27.8 4.5 29 19-47 11-39 (250)
451 cd01980 Chlide_reductase_Y Chl 20.9 1.4E+02 0.003 30.6 4.6 25 123-150 350-374 (416)
452 PF03720 UDPG_MGDP_dh_C: UDP-g 20.8 1.2E+02 0.0025 24.2 3.3 31 25-55 17-47 (106)
453 PRK09620 hypothetical protein; 20.7 1E+02 0.0022 28.7 3.3 21 27-47 32-52 (229)
454 TIGR00064 ftsY signal recognit 20.6 2.2E+02 0.0048 27.2 5.6 39 11-49 73-111 (272)
455 TIGR03026 NDP-sugDHase nucleot 20.6 1.4E+02 0.0031 30.4 4.7 32 11-47 1-32 (411)
456 PRK00771 signal recognition pa 20.6 2.1E+02 0.0045 29.5 5.8 43 9-51 94-136 (437)
457 cd01981 Pchlide_reductase_B Pc 20.5 1.5E+02 0.0033 30.4 4.8 27 123-152 370-396 (430)
458 TIGR00288 conserved hypothetic 20.4 3E+02 0.0066 23.9 5.8 34 20-56 114-148 (160)
459 PRK10422 lipopolysaccharide co 20.3 4.1E+02 0.0088 26.2 7.8 28 123-152 262-289 (352)
460 COG1759 5-formaminoimidazole-4 20.3 2.7E+02 0.0058 27.2 5.9 131 289-443 4-153 (361)
461 PRK08199 thiamine pyrophosphat 20.3 6.6E+02 0.014 26.7 9.8 26 377-404 72-103 (557)
462 COG3245 CycB Cytochrome c5 [En 20.3 64 0.0014 26.2 1.5 50 395-446 60-121 (126)
463 cd07062 Peptidase_S66_mccF_lik 20.2 2.2E+02 0.0048 27.7 5.7 74 314-406 49-124 (308)
464 PF05693 Glycogen_syn: Glycoge 20.2 1.9E+02 0.0041 31.0 5.3 95 369-466 462-566 (633)
465 PRK06466 acetolactate synthase 20.2 6E+02 0.013 27.2 9.5 27 377-405 68-100 (574)
466 cd01143 YvrC Periplasmic bindi 20.2 1.5E+02 0.0033 26.0 4.3 39 104-152 51-90 (195)
467 cd01976 Nitrogenase_MoFe_alpha 20.1 1.1E+02 0.0023 31.5 3.5 26 123-151 369-394 (421)
468 TIGR03575 selen_PSTK_euk L-ser 20.0 8.6E+02 0.019 24.1 11.2 37 14-50 3-40 (340)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.3e-66 Score=529.79 Aligned_cols=461 Identities=32% Similarity=0.606 Sum_probs=356.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhh--CCC--CCCCCCCeeEEeCCCC
Q 010775 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKAR--GQH--SLDGLPSFRFEAIPDG 76 (501)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~--~~~--~~~~~~~~~f~~l~~~ 76 (501)
|||.+- +.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+.. .+. .......++|..+|++
T Consensus 1 ~~~~~~---~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdg 77 (480)
T PLN02555 1 MESESS---LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDG 77 (480)
T ss_pred CCCCCC---CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCC
Confidence 777654 579999999999999999999999999999999999998776654311 010 0011234778878888
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchh
Q 010775 77 LPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISAC 156 (501)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 156 (501)
+|.+. +...++..++..+...+ .+.++++++.+... ...++|||+|.++.|+..+|+++|||++.|++++++
T Consensus 78 lp~~~---~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~----~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 78 WAEDD---PRRQDLDLYLPQLELVG-KREIPNLVKRYAEQ----GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCCc---ccccCHHHHHHHHHHhh-hHHHHHHHHHHhcc----CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 87652 22234445566555556 78889998876421 124599999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEE
Q 010775 157 SFMGFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIII 236 (501)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (501)
.+..+++.. .+..|..... ...... .+|+++.++..+++.+.......+...+.+.+.......++.+++
T Consensus 150 ~~~~~~~~~----~~~~~~~~~~-----~~~~~~-~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlv 219 (480)
T PLN02555 150 CFSAYYHYY----HGLVPFPTET-----EPEIDV-QLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILI 219 (480)
T ss_pred HHHHHHHHh----hcCCCccccc-----CCCcee-ecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEE
Confidence 887766542 2222211100 001122 378887778788876553221222334445455556677889999
Q ss_pred cChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccC
Q 010775 237 HTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN 316 (501)
Q Consensus 237 ~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~ 316 (501)
|||.+||+.+++.++... + ++.|||+......... ..+...++.+++|.+||+.++++++|||||||+..+.
T Consensus 220 NTf~eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~------~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~ 291 (480)
T PLN02555 220 DTFQELEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS------DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLK 291 (480)
T ss_pred EchHHHhHHHHHHHhhCC-C-EEEeCcccCccccccc------cccccccccchhHHHHHhCCCCCceeEEEeccccCCC
Confidence 999999999999987654 4 9999999753211000 1111223445679999999988899999999999889
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCC--CCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHh
Q 010775 317 KQQLIEVAMGLVNSNHPFLWIIRPDLVT--GETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVES 394 (501)
Q Consensus 317 ~~~~~~~~~al~~~~~~~i~~~~~~~~~--~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ea 394 (501)
.+++.+++.+|+.++++|||+++..... .....+|++|.++.++|+++++|+||.+||.|+++++|||||||||+.||
T Consensus 292 ~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea 371 (480)
T PLN02555 292 QEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEA 371 (480)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHH
Confidence 9999999999999999999998743211 11123788898888999999999999999999999999999999999999
Q ss_pred hhcCCceEecCCCCchhhhHHhhhhhhcceeeecCC---CCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhC
Q 010775 395 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD---DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAA 471 (501)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~---~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~ 471 (501)
+++|||||++|+++||+.||+++++.||+|+.+... ...++.++|+++|+++|.+++|+++|+||++|++++++|++
T Consensus 372 i~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~ 451 (480)
T PLN02555 372 LSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVA 451 (480)
T ss_pred HHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999997888999999420 04689999999999999988889999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 010775 472 PHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 472 ~gg~~~~~~~~li~~~~~~ 490 (501)
+|||+..++++||+++.+.
T Consensus 452 egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 452 EGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-66 Score=526.22 Aligned_cols=443 Identities=34% Similarity=0.630 Sum_probs=345.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (501)
+++.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. ....+++|..+|+++|.. ..+..
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~------~~~~~i~~~~ip~glp~~--~~~~~ 74 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS------DDFTDFQFVTIPESLPES--DFKNL 74 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc------cCCCCeEEEeCCCCCCcc--ccccc
Confidence 557899999999999999999999999999999999999876421 10 112369999999888874 12222
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhhh
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (501)
....++..+...+ ...++++++.+..+ ...+++|||+|.+++|+..+|+++|||++.|++++++.+..+.+....
T Consensus 75 -~~~~~~~~~~~~~-~~~~~~~L~~l~~~---~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 75 -GPIEFLHKLNKEC-QVSFKDCLGQLVLQ---QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred -CHHHHHHHHHHHh-HHHHHHHHHHHHhc---cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 2334555555566 77788888776321 123679999999999999999999999999999999987766554332
Q ss_pred hhcCC-CCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHH
Q 010775 168 KEKGL-FPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQV 246 (501)
Q Consensus 168 ~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 246 (501)
...+. .|..... .+....+|+++.++..+++..... ........+... .....++.+++|||++||+.+
T Consensus 150 ~~~~~~~~~~~~~-------~~~~~~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~ 219 (451)
T PLN02410 150 YANNVLAPLKEPK-------GQQNELVPEFHPLRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSS 219 (451)
T ss_pred HhccCCCCccccc-------cCccccCCCCCCCChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHH
Confidence 22111 2221110 011224777776666666643221 111222222222 234678899999999999999
Q ss_pred HHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHHHH
Q 010775 247 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMG 326 (501)
Q Consensus 247 l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 326 (501)
+++++...+.++++|||++..+.. +.+.++++.++.+||++++++++|||||||...+..+++.+++.+
T Consensus 220 ~~~l~~~~~~~v~~vGpl~~~~~~-----------~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~g 288 (451)
T PLN02410 220 LSRLQQQLQIPVYPIGPLHLVASA-----------PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASG 288 (451)
T ss_pred HHHHHhccCCCEEEecccccccCC-----------CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHH
Confidence 999988665559999999754321 112222345689999999889999999999999999999999999
Q ss_pred HHhCCCCEEEEEcCCCCCC--CCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhhhcCCceEec
Q 010775 327 LVNSNHPFLWIIRPDLVTG--ETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 404 (501)
Q Consensus 327 l~~~~~~~i~~~~~~~~~~--~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 404 (501)
|+.++++|||+++.+...+ ....+|++|.+|.++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++
T Consensus 289 Le~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 289 LDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred HHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 9999999999998532111 11237999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 010775 405 PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 484 (501)
Q Consensus 405 P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li 484 (501)
|+++||+.||+++++.+|+|+.+. ..++.++|+++|+++|.+++|+.||++|+++++.+++++++|||+..++++||
T Consensus 369 P~~~DQ~~na~~~~~~~~~G~~~~---~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv 445 (451)
T PLN02410 369 PFSSDQKVNARYLECVWKIGIQVE---GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFV 445 (451)
T ss_pred cccccCHHHHHHHHHHhCeeEEeC---CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999977789999996 57999999999999999887889999999999999999999999999999999
Q ss_pred HHHHh
Q 010775 485 NEILL 489 (501)
Q Consensus 485 ~~~~~ 489 (501)
+++..
T Consensus 446 ~~~~~ 450 (451)
T PLN02410 446 HFMRT 450 (451)
T ss_pred HHHHh
Confidence 99864
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4e-65 Score=518.76 Aligned_cols=439 Identities=27% Similarity=0.516 Sum_probs=339.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (501)
+++.||+++|++++||++|++.||+.|+.+|++||+++++.+...+..... ..++++|..+|++++.. . .
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-----~~~~i~~v~lp~g~~~~---~--~ 73 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-----PKLGITFMSISDGQDDD---P--P 73 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-----CCCCEEEEECCCCCCCC---c--c
Confidence 345799999999999999999999999999999999999988776654311 12369999999877543 1 1
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhhh
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (501)
.++..++..+...+ .+.++++++.+... ..++|||+|.+.+|+..+|+++|||++.|++++++.+..+.+.+..
T Consensus 74 ~~~~~l~~a~~~~~-~~~l~~ll~~l~~~-----~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~ 147 (448)
T PLN02562 74 RDFFSIENSMENTM-PPQLERLLHKLDED-----GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPEL 147 (448)
T ss_pred ccHHHHHHHHHHhc-hHHHHHHHHHhcCC-----CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHH
Confidence 23334444444455 78889998887432 2459999999999999999999999999999988877665544332
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHHH
Q 010775 168 KEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (501)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~l 247 (501)
...+..+..... ........+|+++.++..+++.+...........+.+.+..+...+++.+++|||.+||+.++
T Consensus 148 ~~~~~~~~~~~~-----~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 222 (448)
T PLN02562 148 VRTGLISETGCP-----RQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDV 222 (448)
T ss_pred hhcccccccccc-----ccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHH
Confidence 222221111000 000122347887777777777654322212233445555556677788999999999999888
Q ss_pred HHHhh-----hCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeecccc-ccCHHHHH
Q 010775 248 NALSF-----MFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFI-FMNKQQLI 321 (501)
Q Consensus 248 ~~~~~-----~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~ 321 (501)
+..+. ..|+ ++.|||++...... ......+..+.+|.+||++++++++|||||||+. .++.++++
T Consensus 223 ~~~~~~~~~~~~~~-v~~iGpl~~~~~~~--------~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 293 (448)
T PLN02562 223 KNHQASYNNGQNPQ-ILQIGPLHNQEATT--------ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVR 293 (448)
T ss_pred HHHHhhhccccCCC-EEEecCcccccccc--------cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHH
Confidence 87653 3454 99999997543210 0011122335568899999988899999999986 67889999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhhhcCCce
Q 010775 322 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPM 401 (501)
Q Consensus 322 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 401 (501)
+++.+|++++++|||+++.+.. ..+|++|.++.++|+++++|+||.+||+|+++++|||||||||+.||+++||||
T Consensus 294 ~l~~~l~~~g~~fiW~~~~~~~----~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~ 369 (448)
T PLN02562 294 TLALALEASGRPFIWVLNPVWR----EGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRL 369 (448)
T ss_pred HHHHHHHHCCCCEEEEEcCCch----hhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCE
Confidence 9999999999999999975321 127889999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 010775 402 ICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLD 481 (501)
Q Consensus 402 v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~ 481 (501)
|++|+++||+.||+++++.+|+|+.+ ..++.++|+++|+++|.|++ ||+||+++++++.++ ++||||.++++
T Consensus 370 l~~P~~~DQ~~na~~~~~~~g~g~~~----~~~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~gGSS~~nl~ 441 (448)
T PLN02562 370 LCYPVAGDQFVNCAYIVDVWKIGVRI----SGFGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EARLRSMMNFT 441 (448)
T ss_pred EeCCcccchHHHHHHHHHHhCceeEe----CCCCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCCCCHHHHHH
Confidence 99999999999999996668999888 46899999999999999887 999999999999876 66899999999
Q ss_pred HHHHHHH
Q 010775 482 KLVNEIL 488 (501)
Q Consensus 482 ~li~~~~ 488 (501)
+||++++
T Consensus 442 ~~v~~~~ 448 (448)
T PLN02562 442 TLKDELK 448 (448)
T ss_pred HHHHHhC
Confidence 9999873
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=7e-65 Score=512.99 Aligned_cols=436 Identities=30% Similarity=0.540 Sum_probs=339.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (501)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ..++++|..+|+++|.. ..+...
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~--~~~~~~ 74 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQG--GFSSAG 74 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCc--cccccc
Confidence 346999999999999999999999999999999999998776544321 11359999999988874 122233
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCe-eEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhhh
Q 010775 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAV-SCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (501)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~-DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (501)
++..++..+.+.+ .+.++++++.+... .+| +|||+|.+.+|+..+|+++|||++.|++++++.+..++.. ..
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~ 147 (449)
T PLN02173 75 SVPEYLQNFKTFG-SKTVADIIRKHQST-----DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI 147 (449)
T ss_pred CHHHHHHHHHHhh-hHHHHHHHHHhhcc-----CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh
Confidence 4556666666666 88999999876421 244 9999999999999999999999999999888776554321 11
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHHH
Q 010775 168 KEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (501)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~l 247 (501)
. ... .... +|+++.++..+++.++..........+.+.+......+++.+++|||.+||+.++
T Consensus 148 ~-~~~---------------~~~~-~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 210 (449)
T PLN02173 148 N-NGS---------------LTLP-IKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHEN 210 (449)
T ss_pred c-cCC---------------ccCC-CCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHH
Confidence 0 000 0111 5677666777777655332222233444445555667888999999999999999
Q ss_pred HHHhhhCCCceEEeCcccccc--ccchhccccccccCCCcc--cchhhhhccccCCCCCceEEEeeccccccCHHHHHHH
Q 010775 248 NALSFMFPHHLFTIGPLQLLL--NQTEEQDGMLNSIGYNLL--KEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEV 323 (501)
Q Consensus 248 ~~~~~~~p~~v~~vG~l~~~~--~~~~~~~~~~~~l~~~~~--~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~ 323 (501)
+.++.. ++ ++.|||+.... ..... ... ....+.| .++++|.+||+.++++++|||||||+.....+++.++
T Consensus 211 ~~~~~~-~~-v~~VGPl~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~el 285 (449)
T PLN02173 211 ELLSKV-CP-VLTIGPTVPSMYLDQQIK-SDN--DYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEI 285 (449)
T ss_pred HHHHhc-CC-eeEEcccCchhhcccccc-ccc--cccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHH
Confidence 998764 44 99999996321 00000 000 0001222 2244699999999888999999999998899999999
Q ss_pred HHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh-ccCCeeecccChHHhhcCCCccceEeccCchhHHHhhhcCCceE
Q 010775 324 AMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 402 (501)
Q Consensus 324 ~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~-~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v 402 (501)
+.+| .+.+|+|+++.+.. +.+|++|.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 286 a~gL--s~~~flWvvr~~~~----~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 359 (449)
T PLN02173 286 ASAI--SNFSYLWVVRASEE----SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMV 359 (449)
T ss_pred HHHh--cCCCEEEEEeccch----hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEE
Confidence 9999 77889999985321 12788888887 67899999999999999999999999999999999999999999
Q ss_pred ecCCCCchhhhHHhhhhhhcceeeecCCC--CCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 010775 403 CWPFTGDQPTNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNL 480 (501)
Q Consensus 403 ~~P~~~DQ~~na~rv~~~~g~G~~l~~~~--~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~ 480 (501)
++|+++||+.||+++++.||+|+.+...+ ..++.++|+++|+++|.+++|+.+|+||+++++++++|.++|||+..++
T Consensus 360 ~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l 439 (449)
T PLN02173 360 AMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDINI 439 (449)
T ss_pred ecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999977789999986411 1369999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010775 481 DKLVNEIL 488 (501)
Q Consensus 481 ~~li~~~~ 488 (501)
++||+++.
T Consensus 440 ~~~v~~~~ 447 (449)
T PLN02173 440 NTFVSKIQ 447 (449)
T ss_pred HHHHHHhc
Confidence 99999885
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-63 Score=508.80 Aligned_cols=447 Identities=29% Similarity=0.523 Sum_probs=339.6
Q ss_pred CCCCCCCCCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCC
Q 010775 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKL--LHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLP 78 (501)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~ 78 (501)
|+++.. ++.||+|+|++++||++|++.||++ |++||++|||++++.+.+.+.... .....+++..+|++++
T Consensus 1 ~~~~~~--~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-----~~~~~~~~~~~~~glp 73 (456)
T PLN02210 1 MGSSEG--QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-----KPRRPVDLVFFSDGLP 73 (456)
T ss_pred CCCcCC--CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-----CCCCceEEEECCCCCC
Confidence 666644 4689999999999999999999999 569999999999998877653321 1234688888888887
Q ss_pred CCCCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHH
Q 010775 79 ASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSF 158 (501)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 158 (501)
.. .. .+...++..+.+.+ .+.++++++.. ++||||+|.+++|+..+|+++|||++.|+++++..+
T Consensus 74 ~~---~~--~~~~~~~~~~~~~~-~~~l~~~l~~~---------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~ 138 (456)
T PLN02210 74 KD---DP--RAPETLLKSLNKVG-AKNLSKIIEEK---------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAY 138 (456)
T ss_pred CC---cc--cCHHHHHHHHHHhh-hHHHHHHHhcC---------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHH
Confidence 76 21 23345566555565 66777777552 789999999999999999999999999999999887
Q ss_pred HHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcC
Q 010775 159 MGFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHT 238 (501)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 238 (501)
..+.+.... ....+.. . +.. ....+|+++.++..+++.++.... ...+........+....++.+++||
T Consensus 139 ~~~~~~~~~--~~~~~~~--~-----~~~-~~~~~Pgl~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNT 207 (456)
T PLN02210 139 SVYYRYYMK--TNSFPDL--E-----DLN-QTVELPALPLLEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNS 207 (456)
T ss_pred HHHHhhhhc--cCCCCcc--c-----ccC-CeeeCCCCCCCChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeC
Confidence 765543211 1111110 0 000 112267776667777765443211 1112222334444456678999999
Q ss_pred hhHhhHHHHHHHhhhCCCceEEeCcccccc--ccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccC
Q 010775 239 FDALEQQVLNALSFMFPHHLFTIGPLQLLL--NQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN 316 (501)
Q Consensus 239 ~~~le~~~l~~~~~~~p~~v~~vG~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~ 316 (501)
|+++|+.+++.++. .++ +++|||+.... ..... +.. .......|..+++|.+||+.++++++|||||||.....
T Consensus 208 f~eLE~~~~~~l~~-~~~-v~~VGPl~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~ 283 (456)
T PLN02210 208 FYELESEIIESMAD-LKP-VIPIGPLVSPFLLGDDEE-ETL-DGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESL 283 (456)
T ss_pred HHHHhHHHHHHHhh-cCC-EEEEcccCchhhcCcccc-ccc-ccccccccccchHHHHHHhCCCCCceEEEEecccccCC
Confidence 99999999999887 344 99999997311 00000 000 00001224456679999999888899999999998888
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh-ccCCeeecccChHHhhcCCCccceEeccCchhHHHhh
Q 010775 317 KQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESL 395 (501)
Q Consensus 317 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~-~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal 395 (501)
.+++++++.+|+.++.+|||+++...... .+..+.++. ++++++++|+||.+||+|+++++|||||||||++|++
T Consensus 284 ~~~~~e~a~~l~~~~~~flw~~~~~~~~~----~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai 359 (456)
T PLN02210 284 ENQVETIAKALKNRGVPFLWVIRPKEKAQ----NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETV 359 (456)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCcccc----chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHH
Confidence 99999999999999999999997532111 334555555 4788899999999999999999999999999999999
Q ss_pred hcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC--CCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCC
Q 010775 396 CSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPH 473 (501)
Q Consensus 396 ~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~--~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~g 473 (501)
++|||||++|+++||+.||+++++.+|+|+.+...+ ..++.++|+++|+++|.+++|++||+||+++++.+++|+++|
T Consensus 360 ~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~g 439 (456)
T PLN02210 360 VAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPG 439 (456)
T ss_pred HcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999966699999996410 368999999999999998888999999999999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 010775 474 GSSSLNLDKLVNEIL 488 (501)
Q Consensus 474 g~~~~~~~~li~~~~ 488 (501)
||+..++++||+++.
T Consensus 440 GSS~~~l~~~v~~~~ 454 (456)
T PLN02210 440 GSSARNLDLFISDIT 454 (456)
T ss_pred CcHHHHHHHHHHHHh
Confidence 999999999999986
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1e-63 Score=506.32 Aligned_cols=448 Identities=26% Similarity=0.423 Sum_probs=333.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcch-HHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNTEFNH-RRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 86 (501)
+.||+|+|++++||++|++.||+.|+.+| ..|||++++.+. ..+..... ......++++|..+|+..... ....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~--~~~~ 79 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVK-SIASSQPFVRFIDVPELEEKP--TLGG 79 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhh-hccCCCCCeEEEEeCCCCCCC--cccc
Confidence 46999999999999999999999999998 999999998765 22322111 001112369999999643211 1111
Q ss_pred cccHHHHHHHHHHhhcchH----HHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHh
Q 010775 87 AQDAYSLGENIINNVLLHP----FLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFK 162 (501)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~----l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (501)
..+...++....+.+ .+. +.+++++.... +.+++|||+|.+++|+..+|+++|||++.|++++++.+..+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~----~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 80 TQSVEAYVYDVIEKN-IPLVRNIVMDILSSLALD----GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred ccCHHHHHHHHHHhc-chhHHHHHHHHHHHhccC----CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 233443433333343 443 44444433111 123599999999999999999999999999999998777655
Q ss_pred hhhhhhhcC-CCCCCCccchhhhhcccccccCCCC-CCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChh
Q 010775 163 QFQTFKEKG-LFPVKDKSCLTKEYLNSLIDWIPGM-KDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFD 240 (501)
Q Consensus 163 ~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 240 (501)
+......+. ..+.. . .+ ....+|++ +.++..+++.++.... . ...+.+......+++.+++|||+
T Consensus 155 ~~~~~~~~~~~~~~~--~------~~-~~~~vPgl~~~l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~ 221 (468)
T PLN02207 155 YLADRHSKDTSVFVR--N------SE-EMLSIPGFVNPVPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSF 221 (468)
T ss_pred HhhhccccccccCcC--C------CC-CeEECCCCCCCCChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchH
Confidence 443211100 00000 0 01 11237887 4678888876553211 1 22333444456788999999999
Q ss_pred HhhHHHHHHHhh--hCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHH
Q 010775 241 ALEQQVLNALSF--MFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQ 318 (501)
Q Consensus 241 ~le~~~l~~~~~--~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~ 318 (501)
++|+++++..+. ..|+ ++.|||++..+.. +++......++++.+||++++++++|||||||...++.+
T Consensus 222 ~LE~~~~~~~~~~~~~p~-v~~VGPl~~~~~~---------~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~ 291 (468)
T PLN02207 222 DIEPYSVNHFLDEQNYPS-VYAVGPIFDLKAQ---------PHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGP 291 (468)
T ss_pred HHhHHHHHHHHhccCCCc-EEEecCCcccccC---------CCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHH
Confidence 999999998854 4555 9999999864321 222110112457999999998889999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhhhcC
Q 010775 319 QLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSG 398 (501)
Q Consensus 319 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~G 398 (501)
++++++.+|+.++++|||+++..... ..+.+|++|.+|.++|+++++|+||.+||+|+++++|||||||||+.||+++|
T Consensus 292 q~~ela~~l~~~~~~flW~~r~~~~~-~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~G 370 (468)
T PLN02207 292 LVKEIAHGLELCQYRFLWSLRTEEVT-NDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFG 370 (468)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCCCcc-ccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcC
Confidence 99999999999999999999853211 12238899999999999999999999999999999999999999999999999
Q ss_pred CceEecCCCCchhhhHHhhhhhhcceeeecCC----C-CCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCC
Q 010775 399 VPMICWPFTGDQPTNGRYVCNEWGVGMEINGD----D-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPH 473 (501)
Q Consensus 399 vP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~----~-~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~g 473 (501)
||||++|+++||+.||+++++.+|+|+.+... . ..++.++|+++|+++|.+ ++++||+||+++++++++|+++|
T Consensus 371 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~G 449 (468)
T PLN02207 371 VPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNG 449 (468)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987779999977420 0 246999999999999973 35569999999999999999999
Q ss_pred CChHHHHHHHHHHHHhc
Q 010775 474 GSSSLNLDKLVNEILLS 490 (501)
Q Consensus 474 g~~~~~~~~li~~~~~~ 490 (501)
||+..++++||+++..-
T Consensus 450 GSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 450 GSSFAAIEKFIHDVIGI 466 (468)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 7
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.3e-63 Score=509.61 Aligned_cols=444 Identities=33% Similarity=0.592 Sum_probs=342.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP 85 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 85 (501)
+.+.||+++|+|++||++|++.||++|++| ||+|||++++.+...++.... ..+++|..+|++++.. ..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~------~~gi~fv~lp~~~p~~---~~ 78 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK------PDNIRFATIPNVIPSE---LV 78 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC------CCCEEEEECCCCCCCc---cc
Confidence 678999999999999999999999999999 999999999998877765321 2479999999876654 22
Q ss_pred CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhh
Q 010775 86 TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ 165 (501)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 165 (501)
...++..++..+.+.+ .+.++++++.+. .++||||+|.+++|+..+|+++|||++.++++++..+..+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 79 RAADFPGFLEAVMTKM-EAPFEQLLDRLE-------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred cccCHHHHHHHHHHHh-HHHHHHHHHhcC-------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 2234555555555556 778888887763 27899999999999999999999999999999987766655543
Q ss_pred hhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHH
Q 010775 166 TFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 245 (501)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 245 (501)
.....+..|..... .......++|+++.++..+++.+.... .....+.+........+++.+++|||++||+.
T Consensus 151 ~~~~~~~~~~~~~~-----~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 151 LLPQNGHFPVELSE-----SGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred hhhhccCCCCcccc-----ccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 22211111211100 001122346777666666666544321 22223344444555566789999999999999
Q ss_pred HHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHHH
Q 010775 246 VLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAM 325 (501)
Q Consensus 246 ~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 325 (501)
++++++..++.+++.|||+......... .........+.++.+||+.++++++|||||||+.....+++++++.
T Consensus 224 ~~~~l~~~~~~~~~~iGP~~~~~~~~~~------~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~ 297 (459)
T PLN02448 224 AIDALKSKFPFPVYPIGPSIPYMELKDN------SSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAA 297 (459)
T ss_pred HHHHHHhhcCCceEEecCcccccccCCC------ccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHH
Confidence 9999988776569999999642110000 0000001123478999999888899999999998888889999999
Q ss_pred HHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhhhcCCceEecC
Q 010775 326 GLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWP 405 (501)
Q Consensus 326 al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 405 (501)
+|+..+.+|||+++.. ..++.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|
T Consensus 298 ~l~~~~~~~lw~~~~~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P 368 (459)
T PLN02448 298 GLRDSGVRFLWVARGE---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFP 368 (459)
T ss_pred HHHhCCCCEEEEEcCc---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecc
Confidence 9999999999987632 1234444557899999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHhhhhhhcceeeecCCC---CCccHHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 010775 406 FTGDQPTNGRYVCNEWGVGMEINGDD---EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEAAAPHGSSSLNL 480 (501)
Q Consensus 406 ~~~DQ~~na~rv~~~~g~G~~l~~~~---~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~ 480 (501)
+++||+.||+++++.||+|+.+.... ..+++++|+++|+++|.+ ++|++||+||+++++++++++.+|||+..++
T Consensus 369 ~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l 448 (459)
T PLN02448 369 LFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNL 448 (459)
T ss_pred ccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999976689999985310 357999999999999986 4678899999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 010775 481 DKLVNEILLS 490 (501)
Q Consensus 481 ~~li~~~~~~ 490 (501)
++||+++++.
T Consensus 449 ~~~v~~~~~~ 458 (459)
T PLN02448 449 DAFIRDISQG 458 (459)
T ss_pred HHHHHHHhcc
Confidence 9999999863
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.6e-63 Score=505.55 Aligned_cols=462 Identities=25% Similarity=0.403 Sum_probs=338.6
Q ss_pred CCCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC----CC
Q 010775 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP----DG 76 (501)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~----~~ 76 (501)
|.+... .++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+..... ..+++++..+| ++
T Consensus 1 ~~~~~~-~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-----~~~~i~~~~lp~P~~~~ 74 (477)
T PLN02863 1 MTELNK-PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-----KHPSIETLVLPFPSHPS 74 (477)
T ss_pred Cccccc-CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-----cCCCeeEEeCCCCCcCC
Confidence 444444 567999999999999999999999999999999999999998877654321 12357776654 24
Q ss_pred CCCCCCCCCC-cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccch
Q 010775 77 LPASSDESPT-AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISA 155 (501)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 155 (501)
+|.+.+.... ..+....+......+ .+.+.+++++.. .+++|||+|.+.+|+..+|+++|||++.|+++++
T Consensus 75 lPdG~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~l~~~~-------~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA 146 (477)
T PLN02863 75 IPSGVENVKDLPPSGFPLMIHALGEL-YAPLLSWFRSHP-------SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGA 146 (477)
T ss_pred CCCCCcChhhcchhhHHHHHHHHHHh-HHHHHHHHHhCC-------CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCH
Confidence 4444211111 111122233333344 566677776531 3679999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEE
Q 010775 156 CSFMGFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAII 235 (501)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (501)
+.+..+.+.... .|..... .+......+..+|+++.++..+++.++......+...+.+.+.......++.++
T Consensus 147 ~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 219 (477)
T PLN02863 147 MALSIMYSLWRE-----MPTKINP--DDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLV 219 (477)
T ss_pred HHHHHHHHHhhc-----ccccccc--cccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEE
Confidence 998887764321 1111000 000000112247887777777777655432222223344444444455677899
Q ss_pred EcChhHhhHHHHHHHhhhCC-CceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccc
Q 010775 236 IHTFDALEQQVLNALSFMFP-HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIF 314 (501)
Q Consensus 236 ~~s~~~le~~~l~~~~~~~p-~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~ 314 (501)
+|||++||+.+++.++..+. ++++.|||+......... .. ..+.+.+..++++.+||+.++++++|||||||+..
T Consensus 220 vNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~--~~--~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~ 295 (477)
T PLN02863 220 VNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSG--LM--ERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVV 295 (477)
T ss_pred EecHHHHHHHHHHHHHhhcCCCCeEEeCCCccccccccc--cc--ccCCcccccHHHHHHHHhcCCCCceEEEEeeceec
Confidence 99999999999999988663 349999999743210000 00 00111111245799999999888999999999998
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHhcc-CCeeecccChHHhhcCCCccceEeccCchhHH
Q 010775 315 MNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKE-KGFVASWCPQEEVLKHPSIGGFLTHCGWNSIV 392 (501)
Q Consensus 315 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~p~~~~~~~~~-n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ 392 (501)
...+++++++.+|+.++++|||+++..... .....+|++|.++..+ ++++.+|+||.+||+|+++++|||||||||++
T Consensus 296 ~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~ 375 (477)
T PLN02863 296 LTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVL 375 (477)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHH
Confidence 888999999999999999999999853221 1112378888877654 45567999999999999999999999999999
Q ss_pred HhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC-CCccHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHh
Q 010775 393 ESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMME-GEKGKQMRNKAMEWKGLAEEAA 470 (501)
Q Consensus 393 eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~-~~~~~~~l~~ai~~vl~-~~~~~~~r~~a~~~~~~~~~~~ 470 (501)
||+++|||||++|+++||+.||+++++++|+|+.+.... ..++.+++.++|++++. ++ +||+||+++++++++|+
T Consensus 376 Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~---~~r~~a~~l~e~a~~Av 452 (477)
T PLN02863 376 EGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQ---VERERAKELRRAALDAI 452 (477)
T ss_pred HHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999878899999995310 24689999999999984 44 59999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhc
Q 010775 471 APHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 471 ~~gg~~~~~~~~li~~~~~~ 490 (501)
++|||+..++++||+++.+.
T Consensus 453 ~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 453 KERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred ccCCcHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=6.4e-63 Score=501.40 Aligned_cols=438 Identities=26% Similarity=0.443 Sum_probs=335.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCC----CCCCCCCCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD----GLPASSDES 84 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~----~~~~~~~~~ 84 (501)
+.||+++|++++||++|++.||+.|+ ++|++|||++++.+...+.+... ...++++..+|. +++.. ..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~i~~~~lp~p~~~glp~~--~~ 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTGVDIVGLPSPDISGLVDP--SA 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCCceEEECCCccccCCCCC--Cc
Confidence 56999999999999999999999998 78999999999987665533211 113588988884 34322 11
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhh
Q 010775 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQF 164 (501)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (501)
+....+......+ .+.++++++++. .+|+|||+|.+++|+..+|+++|||++.|++++++.+..+.+.
T Consensus 78 ----~~~~~~~~~~~~~-~~~~~~~l~~~~-------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 145 (481)
T PLN02992 78 ----HVVTKIGVIMREA-VPTLRSKIAEMH-------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYY 145 (481)
T ss_pred ----cHHHHHHHHHHHh-HHHHHHHHHhcC-------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhh
Confidence 1222233334445 678888887752 2789999999999999999999999999999999877654443
Q ss_pred hhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhH
Q 010775 165 QTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQ 244 (501)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~ 244 (501)
+........+.. .......+|+++.++..+++..+... .+.....+.+.......++.+++|||.+||+
T Consensus 146 ~~~~~~~~~~~~---------~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~ 214 (481)
T PLN02992 146 PTLDKDIKEEHT---------VQRKPLAMPGCEPVRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEP 214 (481)
T ss_pred hhhccccccccc---------cCCCCcccCCCCccCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhH
Confidence 221110000000 00011237777767766676433221 2223344445555667788999999999999
Q ss_pred HHHHHHhhh--C----CCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHH
Q 010775 245 QVLNALSFM--F----PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQ 318 (501)
Q Consensus 245 ~~l~~~~~~--~----p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~ 318 (501)
.+++.++.. . ..+++.|||+..... . . +++++|.+||+.++++++|||||||...++.+
T Consensus 215 ~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~----------~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~ 279 (481)
T PLN02992 215 KSLKSLQDPKLLGRVARVPVYPIGPLCRPIQ----------S---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAK 279 (481)
T ss_pred HHHHHHhhccccccccCCceEEecCccCCcC----------C---C--cchHHHHHHHHcCCCCceEEEeecccccCCHH
Confidence 999998752 1 134999999964211 0 0 13457999999998889999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCC---------------C-CCCCCchHHHHHhccCCe-eecccChHHhhcCCCccc
Q 010775 319 QLIEVAMGLVNSNHPFLWIIRPDLVT---------------G-ETADLPAEFEVKAKEKGF-VASWCPQEEVLKHPSIGG 381 (501)
Q Consensus 319 ~~~~~~~al~~~~~~~i~~~~~~~~~---------------~-~~~~~p~~~~~~~~~n~~-~~~~vpq~~lL~~~~~~~ 381 (501)
++++++.+|+.++++|||+++..... . ..+.+|++|.+|..++.. +.+|+||.+||+|+++++
T Consensus 280 q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~ 359 (481)
T PLN02992 280 QLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGG 359 (481)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCe
Confidence 99999999999999999999742100 0 012378899998876664 569999999999999999
Q ss_pred eEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHH
Q 010775 382 FLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAME 461 (501)
Q Consensus 382 ~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 461 (501)
||||||+||+.||+++|||||++|+++||+.||+++++++|+|+.++..+..++.++|+++|+++|.+++|+.||+++++
T Consensus 360 FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~ 439 (481)
T PLN02992 360 FLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKK 439 (481)
T ss_pred eEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999966899999997511248999999999999998888899999999
Q ss_pred HHHHHHHHhC--CCCChHHHHHHHHHHHHhcCC
Q 010775 462 WKGLAEEAAA--PHGSSSLNLDKLVNEILLSNK 492 (501)
Q Consensus 462 ~~~~~~~~~~--~gg~~~~~~~~li~~~~~~~~ 492 (501)
+++.+++|++ +||||..++++|++++.+.-.
T Consensus 440 ~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~~~ 472 (481)
T PLN02992 440 LRDTAEMSLSIDGGGVAHESLCRVTKECQRFLE 472 (481)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9999999994 599999999999999988643
No 10
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-62 Score=500.66 Aligned_cols=458 Identities=31% Similarity=0.563 Sum_probs=332.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC-----CCCCCCCC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP-----DGLPASSD 82 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~-----~~~~~~~~ 82 (501)
+++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+........... ..++|+.+| +++|.+.+
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~-~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESG-LPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccC-CCeEEEEcCCCCccCCCCCCcc
Confidence 345799999999999999999999999999999999999988766654321100011 138999987 57776521
Q ss_pred CCCCcc--cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHH
Q 010775 83 ESPTAQ--DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMG 160 (501)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (501)
...... ++...+......+ .+.++++++... .+++|||+|.+++|+..+|+++|||++.|++++++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l-~~~l~~lL~~~~-------~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~ 156 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKL-QQPLERFLEQAK-------PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLS 156 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHh-HHHHHHHHHhcC-------CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHH
Confidence 111101 1222222223344 677888876531 367999999999999999999999999999999887765
Q ss_pred HhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC---CCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEc
Q 010775 161 FKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKD---IRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIH 237 (501)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (501)
+...... ....+.... .... .+|+++. ++..+++.+..... ...............++.+++|
T Consensus 157 ~~~~~~~--~~~~~~~~~--------~~~~-~iPg~p~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlvN 222 (491)
T PLN02534 157 SHNIRLH--NAHLSVSSD--------SEPF-VVPGMPQSIEITRAQLPGAFVSLP---DLDDVRNKMREAESTAFGVVVN 222 (491)
T ss_pred HHHHHHh--cccccCCCC--------Ccee-ecCCCCccccccHHHCChhhcCcc---cHHHHHHHHHhhcccCCEEEEe
Confidence 4332111 011111000 0112 2566653 55555654332111 1112222222223456789999
Q ss_pred ChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCH
Q 010775 238 TFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNK 317 (501)
Q Consensus 238 s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~ 317 (501)
||.+||+.+++.++..++.+++.|||+......... . . ..+.....++++|.+|||.++++++|||||||.....+
T Consensus 223 Tf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~--~-~-~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~ 298 (491)
T PLN02534 223 SFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLD--K-F-ERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVP 298 (491)
T ss_pred cHHHhhHHHHHHHHhhcCCcEEEECccccccccccc--c-c-ccCCccccchHHHHHHHhcCCCCceEEEEecccccCCH
Confidence 999999999999988775569999999742211000 0 0 00000011235699999999888999999999998889
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCC--CCCCCchHHHHHh-ccCCeeecccChHHhhcCCCccceEeccCchhHHHh
Q 010775 318 QQLIEVAMGLVNSNHPFLWIIRPDLVTG--ETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVES 394 (501)
Q Consensus 318 ~~~~~~~~al~~~~~~~i~~~~~~~~~~--~~~~~p~~~~~~~-~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ea 394 (501)
+++.+++.+|+.++++|||+++.+.... ....+|++|.++. +.++++.+|+||.+||+|+++++||||||+||++||
T Consensus 299 ~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea 378 (491)
T PLN02534 299 SQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEG 378 (491)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHH
Confidence 9999999999999999999998432111 1112678888775 456667799999999999999999999999999999
Q ss_pred hhcCCceEecCCCCchhhhHHhhhhhhcceeeecCC-------CC----CccHHHHHHHHHHHhc--ChhhHHHHHHHHH
Q 010775 395 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD-------DE----DVIRNEVEKLVREMME--GEKGKQMRNKAME 461 (501)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~-------~~----~~~~~~l~~ai~~vl~--~~~~~~~r~~a~~ 461 (501)
+++|||||++|+++||+.||+++++.||+|+.+... ++ .++.++|+++|+++|. +++|+++|+||++
T Consensus 379 ~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~e 458 (491)
T PLN02534 379 ICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQE 458 (491)
T ss_pred HHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999999999998999999988410 01 3799999999999997 4668899999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHhcCC
Q 010775 462 WKGLAEEAAAPHGSSSLNLDKLVNEILLSNK 492 (501)
Q Consensus 462 ~~~~~~~~~~~gg~~~~~~~~li~~~~~~~~ 492 (501)
|++++++++++||||..++++||++|.+.++
T Consensus 459 lk~~a~~Av~~GGSS~~nl~~fv~~i~~~~~ 489 (491)
T PLN02534 459 LGVMARKAMELGGSSHINLSILIQDVLKQQS 489 (491)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987643
No 11
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.4e-62 Score=495.43 Aligned_cols=437 Identities=29% Similarity=0.518 Sum_probs=333.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcc-hHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHH-KGFHITFVNTEFN-HRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (501)
+.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ...+... ....++++|..++++++.+ .....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-----~~~~~~i~~~~i~dglp~g--~~~~~ 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-----HNNVENLSFLTFSDGFDDG--VISNT 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-----CCCCCCEEEEEcCCCCCCc--ccccc
Confidence 359999999999999999999999995 6999999999854 2222111 0112369999999888775 21222
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhhh
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (501)
.+...++..+...+ .+.++++++.+... +.+++|||+|.+.+|+..+|+++|||++.|++++++.+..+++....
T Consensus 76 ~~~~~~~~~~~~~~-~~~l~~~l~~l~~~----~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 76 DDVQNRLVNFERNG-DKALSDFIEANLNG----DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred ccHHHHHHHHHHhc-cHHHHHHHHHhhcc----CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 34555566666666 78899998876421 13569999999999999999999999999999999887776543210
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcc--cCcEEEEcChhHhhHH
Q 010775 168 KEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENAS--KASAIIIHTFDALEQQ 245 (501)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~ 245 (501)
. + ....+|+++.++..+++.++........+.+.+........ .++.+++|||++||+.
T Consensus 151 ~-----~--------------~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 211 (455)
T PLN02152 151 N-----N--------------SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPE 211 (455)
T ss_pred C-----C--------------CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHH
Confidence 0 0 01127777667777777665322222222333333333332 2468999999999999
Q ss_pred HHHHHhhhCCCceEEeCccccccccchhccccccccCC--CcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHH
Q 010775 246 VLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGY--NLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEV 323 (501)
Q Consensus 246 ~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~--~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~ 323 (501)
+++.++. .+ ++.|||+......... ..+. ..++.+.++.+||+.++++++|||||||+..++.++++++
T Consensus 212 ~~~~l~~--~~-v~~VGPL~~~~~~~~~------~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el 282 (455)
T PLN02152 212 FLTAIPN--IE-MVAVGPLLPAEIFTGS------ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEEL 282 (455)
T ss_pred HHHhhhc--CC-EEEEcccCcccccccc------ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHH
Confidence 9998865 24 9999999742110000 0011 1122345799999999888999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEcCCCCC-----CC-C--CCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhh
Q 010775 324 AMGLVNSNHPFLWIIRPDLVT-----GE-T--ADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESL 395 (501)
Q Consensus 324 ~~al~~~~~~~i~~~~~~~~~-----~~-~--~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal 395 (501)
+.+|+.++++|||+++..... +. . ..+|++|.++.++|+++++|+||.+||+|+++++||||||+||+.||+
T Consensus 283 a~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~ 362 (455)
T PLN02152 283 ARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESL 362 (455)
T ss_pred HHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHH
Confidence 999999999999999853110 00 0 014678988999999999999999999999999999999999999999
Q ss_pred hcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC-CCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCC
Q 010775 396 CSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHG 474 (501)
Q Consensus 396 ~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~-~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg 474 (501)
++|||||++|+++||+.||+++++.||+|+.+.... ..++.++|+++|+++|+++ +++||+||++++++++++.++||
T Consensus 363 ~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~gg 441 (455)
T PLN02152 363 VLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGG 441 (455)
T ss_pred HcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999977678888775311 3469999999999999754 56799999999999999999999
Q ss_pred ChHHHHHHHHHHH
Q 010775 475 SSSLNLDKLVNEI 487 (501)
Q Consensus 475 ~~~~~~~~li~~~ 487 (501)
++..++++||+++
T Consensus 442 sS~~nl~~li~~i 454 (455)
T PLN02152 442 SSDKNVEAFVKTL 454 (455)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999999987
No 12
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.7e-62 Score=496.49 Aligned_cols=449 Identities=26% Similarity=0.434 Sum_probs=332.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC----CCCCCCCCC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP----DGLPASSDE 83 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~----~~~~~~~~~ 83 (501)
..+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+..... ....+++|..+| +++|.+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~----~~~~~i~~~~lp~p~~dglp~~~-- 77 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS----QLSSSITLVSFPLPSVPGLPSSA-- 77 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc----cCCCCeeEEECCCCccCCCCCCc--
Confidence 456799999999999999999999999999999999999988766653211 011358999988 6777652
Q ss_pred CCCcccHH----HHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHH
Q 010775 84 SPTAQDAY----SLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFM 159 (501)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (501)
+...++. .++....+.+ .+.++++++.+ +++|||+|.+++|+..+|+++|||++.++++++..+.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~ 146 (472)
T PLN02670 78 -ESSTDVPYTKQQLLKKAFDLL-EPPLTTFLETS---------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLS 146 (472)
T ss_pred -ccccccchhhHHHHHHHHHHh-HHHHHHHHHhC---------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHH
Confidence 2222221 2344445555 77888888764 6799999999999999999999999999999988777
Q ss_pred HHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCC--CCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEc
Q 010775 160 GFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMK--DIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIH 237 (501)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (501)
.+.+.......+..+..... ......+.|... .++..+++.+.............+.+......+++.+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~------~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvN 220 (472)
T PLN02670 147 FIGPPSSLMEGGDLRSTAED------FTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIR 220 (472)
T ss_pred HHhhhHhhhhcccCCCcccc------ccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEe
Confidence 65433211111111111000 000111122222 1344455554432211111222233333445678899999
Q ss_pred ChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCH
Q 010775 238 TFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNK 317 (501)
Q Consensus 238 s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~ 317 (501)
||++||+.+++.++..++.+++.|||+........ .......+.++++.+|||+++++++|||||||+..+..
T Consensus 221 Tf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~-------~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~ 293 (472)
T PLN02670 221 SSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDE-------EDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRR 293 (472)
T ss_pred CHHHHhHHHHHHHHHhhCCCeEEEecCCccccccc-------cccccccchhHHHHHHHhcCCCCceEEEEecccccCCH
Confidence 99999999999998866445999999964211000 00000001235799999999888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCC-CC-CCCCchHHHHHhccCCee-ecccChHHhhcCCCccceEeccCchhHHHh
Q 010775 318 QQLIEVAMGLVNSNHPFLWIIRPDLVT-GE-TADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVES 394 (501)
Q Consensus 318 ~~~~~~~~al~~~~~~~i~~~~~~~~~-~~-~~~~p~~~~~~~~~n~~~-~~~vpq~~lL~~~~~~~~I~HGG~gs~~ea 394 (501)
+++.+++.+|+.++++|||+++..... .. ...+|++|.++..+++++ .+|+||.+||.|+++++|||||||||+.||
T Consensus 294 ~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Ea 373 (472)
T PLN02670 294 EEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEG 373 (472)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHH
Confidence 999999999999999999999853211 11 123889999988777766 699999999999999999999999999999
Q ss_pred hhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC--CCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCC
Q 010775 395 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAP 472 (501)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~--~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~ 472 (501)
+++|||||++|+++||+.||+++ +++|+|+.+...+ ..++.++|+++|+++|.+++|++||+||+++++++++
T Consensus 374 i~~GVP~l~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~---- 448 (472)
T PLN02670 374 LGFGRVLILFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD---- 448 (472)
T ss_pred HHcCCCEEeCcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999 6789999996421 2489999999999999988788899999999999996
Q ss_pred CCChHHHHHHHHHHHHhcC
Q 010775 473 HGSSSLNLDKLVNEILLSN 491 (501)
Q Consensus 473 gg~~~~~~~~li~~~~~~~ 491 (501)
.+...+++++++++|.+..
T Consensus 449 ~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 449 MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred cchhHHHHHHHHHHHHHhc
Confidence 5777899999999999876
No 13
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.7e-62 Score=503.18 Aligned_cols=451 Identities=29% Similarity=0.497 Sum_probs=326.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCC--CCCC-CCeeEEeCC---CCCCCCC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHS--LDGL-PSFRFEAIP---DGLPASS 81 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~--~~~~-~~~~f~~l~---~~~~~~~ 81 (501)
+++.||+++|+|++||++|++.||+.|+.|||+|||++++.+...+++.+.... .... -.+.+..+| +++|.+.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 456799999999999999999999999999999999999998877665432100 0000 134445555 4566542
Q ss_pred CCCCC-----cccHHHHHHHHH---HhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 010775 82 DESPT-----AQDAYSLGENII---NNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 82 ~~~~~-----~~~~~~~~~~~~---~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (501)
+.... ..+...++..+. ..+ .+.++++++. .++||||+|.+++|+..+|+++|||++.|+++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~---------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~ 152 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYF-KDQLEKLLET---------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGT 152 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHH-HHHHHHHHhc---------CCCCEEEECCcchhHHHHHHHhCCCeEEeecc
Confidence 11111 011122333332 222 3444444433 37899999999999999999999999999999
Q ss_pred chhHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC---CCcCCCCcccccCCCcchHHHHHHHHHhhccc
Q 010775 154 SACSFMGFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKD---IRIRDLPSFIQSTDPKDMMFNLCVEATENASK 230 (501)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (501)
+++....++......+....+. . .... .+|+++. ++..+++. ......+.+.+....+...+
T Consensus 153 ~a~~~~~~~~~~~~~~~~~~~~---~-------~~~~-~~pg~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 217 (482)
T PLN03007 153 GYFSLCASYCIRVHKPQKKVAS---S-------SEPF-VIPDLPGDIVITEEQIND----ADEESPMGKFMKEVRESEVK 217 (482)
T ss_pred cHHHHHHHHHHHhcccccccCC---C-------Ccee-eCCCCCCccccCHHhcCC----CCCchhHHHHHHHHHhhccc
Confidence 9887665444322111111110 0 0011 1455542 22222221 11122234444555556778
Q ss_pred CcEEEEcChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeec
Q 010775 231 ASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFG 310 (501)
Q Consensus 231 ~~~~l~~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~G 310 (501)
.+.+++|++++||+++++.++.....++++|||+......... .. ..+...+..+++|.+||+.++++++||||||
T Consensus 218 ~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~--~~--~~~~~~~~~~~~~~~wLd~~~~~svvyvsfG 293 (482)
T PLN03007 218 SFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEE--KA--ERGKKANIDEQECLKWLDSKKPDSVIYLSFG 293 (482)
T ss_pred CCEEEEECHHHHHHHHHHHHHhccCCCEEEEcccccccccccc--cc--ccCCccccchhHHHHHHhcCCCCceEEEeec
Confidence 8899999999999999999987765559999998643211000 00 0011222235679999999988999999999
Q ss_pred cccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHh-ccCCeeecccChHHhhcCCCccceEeccCc
Q 010775 311 SFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGW 388 (501)
Q Consensus 311 s~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~p~~~~~~~-~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~ 388 (501)
|+.....+.+.+++.+|+.++++|||+++..... .....+|++|.+|. +.|+++.+|+||.+||+|+++++||||||+
T Consensus 294 S~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~ 373 (482)
T PLN03007 294 SVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGW 373 (482)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcc
Confidence 9988888899999999999999999999854221 11123788888875 556677899999999999999999999999
Q ss_pred hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeec--------CCCCCccHHHHHHHHHHHhcChhhHHHHHHHH
Q 010775 389 NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN--------GDDEDVIRNEVEKLVREMMEGEKGKQMRNKAM 460 (501)
Q Consensus 389 gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~--------~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~ 460 (501)
||+.||+++|||||++|+++||+.||+++++.+++|+.+. . ..++.++|+++|+++|.+++|++||+||+
T Consensus 374 nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~--~~~~~~~l~~av~~~m~~~~~~~~r~~a~ 451 (482)
T PLN03007 374 NSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKG--DFISREKVEKAVREVIVGEEAEERRLRAK 451 (482)
T ss_pred hHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccccc--CcccHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999999999999999977667776653 2 46899999999999999987888999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010775 461 EWKGLAEEAAAPHGSSSLNLDKLVNEILL 489 (501)
Q Consensus 461 ~~~~~~~~~~~~gg~~~~~~~~li~~~~~ 489 (501)
++++++++++++||||..++++||+.+.+
T Consensus 452 ~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 452 KLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999985
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=6.1e-62 Score=498.99 Aligned_cols=445 Identities=28% Similarity=0.462 Sum_probs=337.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCcchH----HHhhhhCCCCCCCCCCeeEEeCCCCCCCC
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKG----FHITFVNTEFNHR----RLLKARGQHSLDGLPSFRFEAIPDGLPAS 80 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 80 (501)
+|.||+|+|++++||++|++.||+.|+.+| +.|||++++.+.. .+....... .....+++|..+|++.+..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRRE-AASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhc-ccCCCCEEEEECCCCCCCC
Confidence 356999999999999999999999999996 7999999876422 333221100 0111259999999654222
Q ss_pred CCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHH
Q 010775 81 SDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMG 160 (501)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (501)
..+ +...++..+.+.+ .+.++++++.+. .+++|||+|.+++|+..+|+++|||++.|++++++.+..
T Consensus 81 --~~e---~~~~~~~~~~~~~-~~~l~~~L~~l~-------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~ 147 (480)
T PLN00164 81 --DAA---GVEEFISRYIQLH-APHVRAAIAGLS-------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLAL 147 (480)
T ss_pred --ccc---cHHHHHHHHHHhh-hHHHHHHHHhcC-------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHH
Confidence 111 2334455455566 778888887752 257999999999999999999999999999999988877
Q ss_pred HhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChh
Q 010775 161 FKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFD 240 (501)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 240 (501)
+.+.+.... -.+..... ...... +|+++.++..+++.+..... +...+.+....+...+++.+++|||+
T Consensus 148 ~~~~~~~~~--~~~~~~~~------~~~~~~-iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~ 216 (480)
T PLN00164 148 MLRLPALDE--EVAVEFEE------MEGAVD-VPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAA 216 (480)
T ss_pred Hhhhhhhcc--cccCcccc------cCccee-cCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechH
Confidence 665432211 01100000 011222 78877777777776543221 12223333344556678899999999
Q ss_pred HhhHHHHHHHhhhC------CCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccc
Q 010775 241 ALEQQVLNALSFMF------PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIF 314 (501)
Q Consensus 241 ~le~~~l~~~~~~~------p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~ 314 (501)
+||+.+++.++... .++++.|||+...... + ..+..+++|.+||+.++++++|||||||+..
T Consensus 217 eLE~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~---------~---~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~ 284 (480)
T PLN00164 217 ELEPGVLAAIADGRCTPGRPAPTVYPIGPVISLAFT---------P---PAEQPPHECVRWLDAQPPASVVFLCFGSMGF 284 (480)
T ss_pred HhhHHHHHHHHhccccccCCCCceEEeCCCcccccc---------C---CCccchHHHHHHHHhCCCCceEEEEeccccc
Confidence 99999999998742 1249999999742211 0 0112356799999999888999999999988
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCCC--------CCCCCCchHHHHHhccCCee-ecccChHHhhcCCCccceEec
Q 010775 315 MNKQQLIEVAMGLVNSNHPFLWIIRPDLVT--------GETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTH 385 (501)
Q Consensus 315 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--------~~~~~~p~~~~~~~~~n~~~-~~~vpq~~lL~~~~~~~~I~H 385 (501)
...+++++++.+|+.++++|||+++..... +....+|++|.++..+++++ .+|+||.+||.|+++++||||
T Consensus 285 ~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH 364 (480)
T PLN00164 285 FDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTH 364 (480)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEee
Confidence 888889999999999999999999854211 11123788888887777765 499999999999999999999
Q ss_pred cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC---CCccHHHHHHHHHHHhcCh--hhHHHHHHHH
Q 010775 386 CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD---EDVIRNEVEKLVREMMEGE--KGKQMRNKAM 460 (501)
Q Consensus 386 GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~---~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~ 460 (501)
|||||++||+++|||||++|+++||+.||+++++++|+|+.+...+ ..++.++|+++|+++|.++ +|+.+|++|+
T Consensus 365 ~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~ 444 (480)
T PLN00164 365 CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAA 444 (480)
T ss_pred cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 9999999999999999999999999999998878899999986310 2479999999999999864 4789999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010775 461 EWKGLAEEAAAPHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 461 ~~~~~~~~~~~~gg~~~~~~~~li~~~~~~ 490 (501)
++++++++++++|||+..++++||+++.+.
T Consensus 445 ~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 445 EMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999874
No 15
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1e-61 Score=488.25 Aligned_cols=435 Identities=23% Similarity=0.359 Sum_probs=327.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC--CCCCCCCCCCC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPASSDESP 85 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~--~~~~~~~~~~~ 85 (501)
+.|+||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... . .....-.+.+..+| +++|.+.+...
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~--~~~~~~~v~~~~~p~~~glp~g~e~~~ 79 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N--LFPHNIVFRSVTVPHVDGLPVGTETVS 79 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c--cCCCCceEEEEECCCcCCCCCcccccc
Confidence 3567999999999999999999999999999999999999876655432 0 00001137777777 67766521110
Q ss_pred -CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhh
Q 010775 86 -TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQF 164 (501)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (501)
...+....+......+ .+.++++++.+ ++||||+|. ++|+..+|+++|||++.|++++++.+..+..
T Consensus 80 ~~~~~~~~~~~~a~~~~-~~~~~~~l~~~---------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~- 147 (453)
T PLN02764 80 EIPVTSADLLMSAMDLT-RDQVEVVVRAV---------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV- 147 (453)
T ss_pred cCChhHHHHHHHHHHHh-HHHHHHHHHhC---------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-
Confidence 0111112233333444 67888888764 679999994 8899999999999999999999987766442
Q ss_pred hhhhhcCCCCCCCccchhhhhcccccccCCCCCC----CCcCCCCccccc-C-CCcchHHHHHHHHHhhcccCcEEEEcC
Q 010775 165 QTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKD----IRIRDLPSFIQS-T-DPKDMMFNLCVEATENASKASAIIIHT 238 (501)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~s 238 (501)
. ....+ ...|+++. ++..+++.+... . ...+............+..++.+++||
T Consensus 148 ~----~~~~~----------------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNT 207 (453)
T PLN02764 148 P----GGELG----------------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRT 207 (453)
T ss_pred c----cccCC----------------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEec
Confidence 0 01100 00244431 333334332110 0 111123334444445567788999999
Q ss_pred hhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHH
Q 010775 239 FDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQ 318 (501)
Q Consensus 239 ~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~ 318 (501)
|.+||+.++++++...+++++.|||+...+.. . . ..+++|.+|||.++++++|||||||+..+..+
T Consensus 208 f~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~---------~--~---~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~ 273 (453)
T PLN02764 208 AREIEGNFCDYIEKHCRKKVLLTGPVFPEPDK---------T--R---ELEERWVKWLSGYEPDSVVFCALGSQVILEKD 273 (453)
T ss_pred cHHhhHHHHHHHHhhcCCcEEEeccCccCccc---------c--c---cchhHHHHHHhCCCCCceEEEeecccccCCHH
Confidence 99999999999987554459999999643210 0 0 12457999999999999999999999989999
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCC-CCCCCchHHHHHhccCCee-ecccChHHhhcCCCccceEeccCchhHHHhhh
Q 010775 319 QLIEVAMGLVNSNHPFLWIIRPDLVTG-ETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVESLC 396 (501)
Q Consensus 319 ~~~~~~~al~~~~~~~i~~~~~~~~~~-~~~~~p~~~~~~~~~n~~~-~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~ 396 (501)
++.++..+|+..+.+|+|+++...... ....+|++|.+|..+++.+ .+|+||.+||+|+++++|||||||||+.||++
T Consensus 274 q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~ 353 (453)
T PLN02764 274 QFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLL 353 (453)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHH
Confidence 999999999999999999998532111 1223899999998777765 59999999999999999999999999999999
Q ss_pred cCCceEecCCCCchhhhHHhhhhhhcceeeecCCC-CCccHHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHHHHHhCCC
Q 010775 397 SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEAAAPH 473 (501)
Q Consensus 397 ~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~-~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~~~~~~~~~~~~g 473 (501)
+|||||++|+++||+.||+++++.+|+|+.+...+ ..++.++|+++|+++|.+ +.|+++|++++++++.+++ |
T Consensus 354 ~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~ 429 (453)
T PLN02764 354 SDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----P 429 (453)
T ss_pred cCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----c
Confidence 99999999999999999999977789999985410 258999999999999987 4588999999999999975 8
Q ss_pred CChHHHHHHHHHHHHhcCCCCC
Q 010775 474 GSSSLNLDKLVNEILLSNKHNS 495 (501)
Q Consensus 474 g~~~~~~~~li~~~~~~~~~~~ 495 (501)
||+..++++||+++.+...+.|
T Consensus 430 GSS~~~l~~lv~~~~~~~~~~~ 451 (453)
T PLN02764 430 GLLTGYVDNFIESLQDLVSGTS 451 (453)
T ss_pred CCHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999866654
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.9e-61 Score=497.19 Aligned_cols=448 Identities=30% Similarity=0.447 Sum_probs=328.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHh--hhhCCCCC-CCCCCeeEEeCCCCCCCCCCCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRLL--KARGQHSL-DGLPSFRFEAIPDGLPASSDES 84 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~--~~~~~~~~-~~~~~~~f~~l~~~~~~~~~~~ 84 (501)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+...+. ........ ...++++|+.+|++.+.. .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~---~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT---T 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc---c
Confidence 68999999999999999999999999998 8899999987654221 10000000 012369999998766422 1
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcC-CCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhh
Q 010775 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDS-SNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQ 163 (501)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 163 (501)
. ...+..++ ..+ .+.+++.++++... ....+++.+|||+|.++.|+..+|+++|||++.|+++++..+..+.+
T Consensus 79 ~-~~~~~~~~----~~~-~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 79 E-DPTFQSYI----DNQ-KPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred c-chHHHHHH----HHH-HHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 1 11222222 233 34444444443210 00001234899999999999999999999999999999998887666
Q ss_pred hhhhhhcCCCCCCCccchhhhhcccccccCCCCC-CCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHh
Q 010775 164 FQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMK-DIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDAL 242 (501)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 242 (501)
.+......-.+..... +..... .+|++. .++..+++..... +.....+......+..++.+++||+.++
T Consensus 153 ~~~~~~~~~~~~~~~~-----~~~~~v-~iPgl~~pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eL 222 (481)
T PLN02554 153 VQMLYDEKKYDVSELE-----DSEVEL-DVPSLTRPYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAEL 222 (481)
T ss_pred hhhhccccccCccccC-----CCCcee-ECCCCCCCCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHH
Confidence 5432111101100000 000122 277763 5666666654321 1223344444556677899999999999
Q ss_pred hHHHHHHHhh---hCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHH
Q 010775 243 EQQVLNALSF---MFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQ 319 (501)
Q Consensus 243 e~~~l~~~~~---~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~ 319 (501)
|+.+++.+.. ..|+ +++|||+...... ..... ...++++.+||++++++++|||||||+.....++
T Consensus 223 e~~~~~~l~~~~~~~~~-v~~vGpl~~~~~~---------~~~~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~ 291 (481)
T PLN02554 223 EPQALKFFSGSSGDLPP-VYPVGPVLHLENS---------GDDSK-DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQ 291 (481)
T ss_pred hHHHHHHHHhcccCCCC-EEEeCCCcccccc---------ccccc-cccchHHHHHHhcCCCCcEEEEeccccccCCHHH
Confidence 9999988875 3455 9999999422111 00000 1124579999999888899999999998888999
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCC----------CCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCch
Q 010775 320 LIEVAMGLVNSNHPFLWIIRPDLV----------TGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWN 389 (501)
Q Consensus 320 ~~~~~~al~~~~~~~i~~~~~~~~----------~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~g 389 (501)
+++++.+|++++++|||+++.... ......+|++|.+|.++|+++++|+||.+||.|+++++||||||||
T Consensus 292 ~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~n 371 (481)
T PLN02554 292 AREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWN 371 (481)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccc
Confidence 999999999999999999975311 0011125889999999999999999999999999999999999999
Q ss_pred hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCC---------CCCccHHHHHHHHHHHhc-ChhhHHHHHHH
Q 010775 390 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD---------DEDVIRNEVEKLVREMME-GEKGKQMRNKA 459 (501)
Q Consensus 390 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~---------~~~~~~~~l~~ai~~vl~-~~~~~~~r~~a 459 (501)
|+.||+++|||||++|+++||+.||+++++++|+|+.++.. ...++.++|+++|+++|. |++ ||+||
T Consensus 372 S~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~---~r~~a 448 (481)
T PLN02554 372 SILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSD---VRKRV 448 (481)
T ss_pred hHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHH---HHHHH
Confidence 99999999999999999999999996655899999998620 036899999999999997 555 99999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010775 460 MEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 460 ~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~ 490 (501)
+++++++++++++|||+..++++||+++.++
T Consensus 449 ~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 449 KEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999874
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.9e-61 Score=484.75 Aligned_cols=441 Identities=24% Similarity=0.397 Sum_probs=331.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHh-hhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRLL-KARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (501)
+.||+++|++++||++|++.||+.|+.+ |..||+++++.+...+. +...+. .....+++|..+|....... ....
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~~~l--~~~~ 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHA-AAARTTCQITEIPSVDVDNL--VEPD 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccc-ccCCCceEEEECCCCccccC--CCCC
Confidence 4599999999999999999999999977 99999999876554431 111110 00112599999985332110 0000
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCC-eEEEeccchhHHHHHhhhhh
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLP-IVLFFTISACSFMGFKQFQT 166 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~ 166 (501)
.+....+....+.+ .+.++++++++. .+++|||+|.+++|+..+|+++||| ++.++++.++.+..+++.+.
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~l~~l~-------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 80 ATIFTKMVVKMRAM-KPAVRDAVKSMK-------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred ccHHHHHHHHHHhc-hHHHHHHHHhcC-------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 13332333344556 788999998763 2679999999999999999999999 57777777766655554432
Q ss_pred hhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHH
Q 010775 167 FKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQV 246 (501)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 246 (501)
.. ...+.... .....+ .+|+++.++..+++..+.... ......+.........++.+++|||++||+.+
T Consensus 152 ~~--~~~~~~~~------~~~~~~-~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~ 220 (470)
T PLN03015 152 LD--TVVEGEYV------DIKEPL-KIPGCKPVGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNT 220 (470)
T ss_pred hh--cccccccC------CCCCee-eCCCCCCCChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 11 11110000 001122 378887788888876443221 12223333444456789999999999999999
Q ss_pred HHHHhhhC-------CCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHH
Q 010775 247 LNALSFMF-------PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQ 319 (501)
Q Consensus 247 l~~~~~~~-------p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~ 319 (501)
++.++..+ ++ ++.|||+..... .. +.++++.+|||.++++++|||||||...+..++
T Consensus 221 ~~~l~~~~~~~~~~~~~-v~~VGPl~~~~~----------~~-----~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q 284 (470)
T PLN03015 221 LAALREDMELNRVMKVP-VYPIGPIVRTNV----------HV-----EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQ 284 (470)
T ss_pred HHHHHhhcccccccCCc-eEEecCCCCCcc----------cc-----cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHH
Confidence 99998742 44 999999973211 10 123479999999988999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCC--------CC-CCCCCchHHHHHhccCCee-ecccChHHhhcCCCccceEeccCch
Q 010775 320 LIEVAMGLVNSNHPFLWIIRPDLV--------TG-ETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTHCGWN 389 (501)
Q Consensus 320 ~~~~~~al~~~~~~~i~~~~~~~~--------~~-~~~~~p~~~~~~~~~n~~~-~~~vpq~~lL~~~~~~~~I~HGG~g 389 (501)
+++++.+|+.++++|||+++.... .. ..+.+|++|.+|..+++++ .+|+||.+||+|+++++||||||||
T Consensus 285 ~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~Gwn 364 (470)
T PLN03015 285 TVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWS 364 (470)
T ss_pred HHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCch
Confidence 999999999999999999974211 00 1123888999998877754 6999999999999999999999999
Q ss_pred hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCC-C-CCccHHHHHHHHHHHhcC--hhhHHHHHHHHHHHHH
Q 010775 390 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD-D-EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGL 465 (501)
Q Consensus 390 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~-~-~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~~~~~ 465 (501)
|+.||+++|||||++|+++||+.||+++++.+|+|+.+... . ..++.++++++|+++|.+ ++|+++|+||++++++
T Consensus 365 S~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~ 444 (470)
T PLN03015 365 SVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVS 444 (470)
T ss_pred hHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999510 0 368999999999999963 5688999999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHH
Q 010775 466 AEEAAAPHGSSSLNLDKLVNEIL 488 (501)
Q Consensus 466 ~~~~~~~gg~~~~~~~~li~~~~ 488 (501)
+++|+++||||..++++|++++.
T Consensus 445 a~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 445 SERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHHhcCCCcHHHHHHHHHHhcc
Confidence 99999999999999999999873
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.9e-61 Score=487.78 Aligned_cols=418 Identities=25% Similarity=0.370 Sum_probs=314.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeC--C--CCCCCCCCCC
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAI--P--DGLPASSDES 84 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l--~--~~~~~~~~~~ 84 (501)
++.||+++|++++||++|++.||+.|+++||+|||++++.+...+..... ...+++|..+ + ++++.+ .
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a-----~~~~i~~~~l~~p~~dgLp~g---~ 74 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL-----FPDSIVFHPLTIPPVNGLPAG---A 74 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC-----CCCceEEEEeCCCCccCCCCC---c
Confidence 46899999999999999999999999999999999999888776654311 1124556554 3 456655 2
Q ss_pred CCcccHH----HHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHH
Q 010775 85 PTAQDAY----SLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMG 160 (501)
Q Consensus 85 ~~~~~~~----~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (501)
+...++. .++......+ .+.++++++.+ ++||||+| ++.|+..+|+.+|||++.|+++++..+.
T Consensus 75 ~~~~~l~~~l~~~~~~~~~~~-~~~l~~~L~~~---------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~- 142 (442)
T PLN02208 75 ETTSDIPISMDNLLSEALDLT-RDQVEAAVRAL---------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA- 142 (442)
T ss_pred ccccchhHHHHHHHHHHHHHH-HHHHHHHHhhC---------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-
Confidence 2222222 2232223344 56677777653 77999999 5789999999999999999999887643
Q ss_pred HhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC----CCcCCCCcccccCCCcchHHHHHH-HHHhhcccCcEEE
Q 010775 161 FKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKD----IRIRDLPSFIQSTDPKDMMFNLCV-EATENASKASAII 235 (501)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 235 (501)
+.+... .... . ..|+++. ++..+++.+. ........+. ...+....++.++
T Consensus 143 ~~~~~~----~~~~-------------~---~~pglp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl 198 (442)
T PLN02208 143 HTHVPG----GKLG-------------V---PPPGYPSSKVLFRENDAHALA----TLSIFYKRLYHQITTGLKSCDVIA 198 (442)
T ss_pred HHccCc----cccC-------------C---CCCCCCCcccccCHHHcCccc----ccchHHHHHHHHHHhhhccCCEEE
Confidence 332210 0000 0 0244432 2344444321 1111222222 3334556788999
Q ss_pred EcChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeecccccc
Q 010775 236 IHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFM 315 (501)
Q Consensus 236 ~~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~ 315 (501)
+|||.+||+.++++++..++++++.|||++..+.. +.. .++++.+|||.++++++|||||||+..+
T Consensus 199 ~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~-----------~~~---~~~~~~~wLd~~~~~sVvyvSfGS~~~l 264 (442)
T PLN02208 199 LRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDT-----------SKP---LEEQWSHFLSGFPPKSVVFCSLGSQIIL 264 (442)
T ss_pred EECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCC-----------CCC---CHHHHHHHHhcCCCCcEEEEeccccccC
Confidence 99999999999999987665559999999853210 001 2457999999998889999999999988
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHhcc-CCeeecccChHHhhcCCCccceEeccCchhHHH
Q 010775 316 NKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKE-KGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVE 393 (501)
Q Consensus 316 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~~p~~~~~~~~~-n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~e 393 (501)
+.+++.+++.+++..+.+++|+++.+... .....+|++|.+|..+ |+++.+|+||.+||.|+++++|||||||||+.|
T Consensus 265 ~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~E 344 (442)
T PLN02208 265 EKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWE 344 (442)
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHH
Confidence 89989999999888999999999854211 1112388899988755 455669999999999999999999999999999
Q ss_pred hhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC---ccHHHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHH
Q 010775 394 SLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED---VIRNEVEKLVREMMEGE--KGKQMRNKAMEWKGLAEE 468 (501)
Q Consensus 394 al~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~---~~~~~l~~ai~~vl~~~--~~~~~r~~a~~~~~~~~~ 468 (501)
|+++|||||++|+++||+.||+++++.+|+|+.++. .. ++.++|+++|+++|.++ .|+++|++++++++.+.
T Consensus 345 ai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~--~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~- 421 (442)
T PLN02208 345 SLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSR--EKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV- 421 (442)
T ss_pred HHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecc--ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999998677999999975 33 99999999999999864 48899999999999985
Q ss_pred HhCCCCChHHHHHHHHHHHHhc
Q 010775 469 AAAPHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 469 ~~~~gg~~~~~~~~li~~~~~~ 490 (501)
++||+..++++||+++++.
T Consensus 422 ---~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 422 ---SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred ---cCCcHHHHHHHHHHHHHHh
Confidence 3789999999999999753
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.4e-61 Score=491.72 Aligned_cols=455 Identities=25% Similarity=0.420 Sum_probs=326.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCcchH-HHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKG---FHITFVNTEFNHR-RLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG---H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 84 (501)
++.||+++|++++||++|++.||+.|+.+| +.||++++..+.. ....... ......++++|..+|++.... ..
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~p~--~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLK-SLIASEPRIRLVTLPEVQDPP--PM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHh-hcccCCCCeEEEECCCCCCCc--cc
Confidence 356999999999999999999999999998 3567776543221 1111100 001112369999998654221 11
Q ss_pred CC-cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCC-CeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHh
Q 010775 85 PT-AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNP-AVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFK 162 (501)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~-~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (501)
+. .......+..+...+ .+.++++++++....+..+. +++|||+|.+++|+..+|+++|||++.|++++++.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 79 ELFVKASEAYILEFVKKM-VPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred cccccchHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 10 111112233334444 56677776665321000012 4699999999999999999999999999999998777655
Q ss_pred hhhhhhhcCCCCCCCccchhhhhcccccccCCCCC-CCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhH
Q 010775 163 QFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMK-DIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDA 241 (501)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 241 (501)
+.+... ...+..... . ...... .+|+++ .++..+++....... ..+.+....+....++.+++|||++
T Consensus 158 ~~~~~~--~~~~~~~~~--~--~~~~~~-~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~e 226 (475)
T PLN02167 158 YLPERH--RKTASEFDL--S--SGEEEL-PIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTE 226 (475)
T ss_pred HHHHhc--ccccccccc--C--CCCCee-ECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHH
Confidence 443211 101100000 0 000112 267773 466666654332211 1223334444567788999999999
Q ss_pred hhHHHHHHHhhh---CCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHH
Q 010775 242 LEQQVLNALSFM---FPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQ 318 (501)
Q Consensus 242 le~~~l~~~~~~---~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~ 318 (501)
||+.++++++.. +|+ +++|||++........ .++. ..++++.+||+.++++++|||||||+.....+
T Consensus 227 LE~~~~~~l~~~~~~~p~-v~~vGpl~~~~~~~~~------~~~~---~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~ 296 (475)
T PLN02167 227 LEPNAFDYFSRLPENYPP-VYPVGPILSLKDRTSP------NLDS---SDRDRIMRWLDDQPESSVVFLCFGSLGSLPAP 296 (475)
T ss_pred HHHHHHHHHHhhcccCCe-eEEeccccccccccCC------CCCc---chhHHHHHHHhcCCCCceEEEeecccccCCHH
Confidence 999999998764 455 9999999753221000 1111 12357999999998889999999999888889
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCC--CCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhhh
Q 010775 319 QLIEVAMGLVNSNHPFLWIIRPDLVT--GETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLC 396 (501)
Q Consensus 319 ~~~~~~~al~~~~~~~i~~~~~~~~~--~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~ 396 (501)
++.+++.+|+.++++|||+++..... .....+|++|.+|..+++++++|+||.+||+|+++++|||||||||++||++
T Consensus 297 ~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~ 376 (475)
T PLN02167 297 QIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLW 376 (475)
T ss_pred HHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHH
Confidence 99999999999999999999853211 1122378899999888899999999999999999999999999999999999
Q ss_pred cCCceEecCCCCchhhhHHhhhhhhcceeeecCC-----CCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhC
Q 010775 397 SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD-----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAA 471 (501)
Q Consensus 397 ~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~-----~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~ 471 (501)
+|||||++|+++||+.||+++++++|+|+.+... ...++.++|+++|+++|.+++ .||+||+++++.++++++
T Consensus 377 ~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av~ 454 (475)
T PLN02167 377 FGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAVM 454 (475)
T ss_pred cCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998755889999998631 024799999999999997652 499999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhc
Q 010775 472 PHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 472 ~gg~~~~~~~~li~~~~~~ 490 (501)
+|||+..++++||++|.+-
T Consensus 455 ~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 455 DGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999874
No 20
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1e-60 Score=482.91 Aligned_cols=435 Identities=31% Similarity=0.500 Sum_probs=323.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEE--EeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITF--VNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 86 (501)
-||+++|++++||++|++.||+.|+.+| +.||+ ++++.+...+..... ......++++|..+|++.+... ....
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~~-~~~~ 81 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS-SVSSSFPSITFHHLPAVTPYSS-SSTS 81 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc-cccCCCCCeEEEEcCCCCCCCC-cccc
Confidence 3999999999999999999999999998 55665 445443332222111 1111223699999997664220 1112
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhh
Q 010775 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQT 166 (501)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 166 (501)
..+...++..+...+ .+.++++++++.. +.+++|||+|.+.+|+..+|+++|||++.|++++++.+..+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~l~~l~~-----~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~ 155 (451)
T PLN03004 82 RHHHESLLLEILCFS-NPSVHRTLFSLSR-----NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPT 155 (451)
T ss_pred ccCHHHHHHHHHHhh-hHHHHHHHHhcCC-----CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHh
Confidence 223333444444555 7788888887632 1246999999999999999999999999999999988877665432
Q ss_pred hhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHH
Q 010775 167 FKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQV 246 (501)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 246 (501)
.. ...|..... +.....+|+++.++..+++.+..... ....+.+.........++.+++|||++||+.+
T Consensus 156 ~~--~~~~~~~~~-------~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~ 224 (451)
T PLN03004 156 ID--ETTPGKNLK-------DIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRA 224 (451)
T ss_pred cc--ccccccccc-------cCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHH
Confidence 11 001100000 00112378887778888886554321 22334444555566778899999999999999
Q ss_pred HHHHhhhCC-CceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHHH
Q 010775 247 LNALSFMFP-HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAM 325 (501)
Q Consensus 247 l~~~~~~~p-~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 325 (501)
++.++..+. ++++.|||+...+.. ..... ..+++|.+|||.++++++|||||||+..++.+++++++.
T Consensus 225 l~~l~~~~~~~~v~~vGPl~~~~~~----------~~~~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~ 293 (451)
T PLN03004 225 IKAITEELCFRNIYPIGPLIVNGRI----------EDRND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAV 293 (451)
T ss_pred HHHHHhcCCCCCEEEEeeeccCccc----------ccccc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHH
Confidence 999987532 349999999742210 00011 123569999999988999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCC-CC---C-CCCCchHHHHHhccC-CeeecccChHHhhcCCCccceEeccCchhHHHhhhcCC
Q 010775 326 GLVNSNHPFLWIIRPDLV-TG---E-TADLPAEFEVKAKEK-GFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGV 399 (501)
Q Consensus 326 al~~~~~~~i~~~~~~~~-~~---~-~~~~p~~~~~~~~~n-~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~Gv 399 (501)
+|+.++++|||+++.... +. . ...+|++|.+|..++ +++.+|+||.+||+|+++++||||||+||+.||+++||
T Consensus 294 gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GV 373 (451)
T PLN03004 294 GLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGV 373 (451)
T ss_pred HHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCC
Confidence 999999999999985311 00 1 112788999988654 56679999999999999999999999999999999999
Q ss_pred ceEecCCCCchhhhHHhhhhhhcceeeecCCC-CCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHH
Q 010775 400 PMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSL 478 (501)
Q Consensus 400 P~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~-~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~ 478 (501)
|||++|+++||+.||+++++++|+|+.++..+ ..++.++|+++|+++|.|++ ||++++++++.++.|+++||||..
T Consensus 374 P~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 374 PMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred CEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999966789999997511 25799999999999999877 999999999999999999999763
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2e-60 Score=482.18 Aligned_cols=422 Identities=25% Similarity=0.336 Sum_probs=314.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC----CCCCCCCCCC
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP----DGLPASSDES 84 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~----~~~~~~~~~~ 84 (501)
++.||+++|++++||++|++.||+.|+.+|++|||++++.+...+..... ..++++|..++ +++|.+ .
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-----~~~~i~~~~i~lP~~dGLP~g---~ 74 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-----FPDSIVFEPLTLPPVDGLPFG---A 74 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-----CCCceEEEEecCCCcCCCCCc---c
Confidence 46799999999999999999999999999999999999988766654321 11247785553 567665 2
Q ss_pred CCcccHHH----HHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHH
Q 010775 85 PTAQDAYS----LGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMG 160 (501)
Q Consensus 85 ~~~~~~~~----~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (501)
+...++.. .+......+ .+.++++++. .+|||||+|. ++|+..+|+++|||++.|++++++.+..
T Consensus 75 e~~~~l~~~~~~~~~~a~~~l-~~~l~~~L~~---------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~ 143 (446)
T PLN00414 75 ETASDLPNSTKKPIFDAMDLL-RDQIEAKVRA---------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAM 143 (446)
T ss_pred cccccchhhHHHHHHHHHHHH-HHHHHHHHhc---------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 22222211 122222233 4556666543 2679999995 8899999999999999999999987776
Q ss_pred HhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC----CCcCC--CCcccccCCCcchHHHHHHHHHhhcccCcEE
Q 010775 161 FKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKD----IRIRD--LPSFIQSTDPKDMMFNLCVEATENASKASAI 234 (501)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (501)
+.+... .... | .|+++. ++..+ ++.+.. . ....+.+..+...+++.+
T Consensus 144 ~~~~~~--~~~~-~------------------~pg~p~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~v 196 (446)
T PLN00414 144 VLAPRA--ELGF-P------------------PPDYPLSKVALRGHDANVCSLFA-----N-SHELFGLITKGLKNCDVV 196 (446)
T ss_pred HhCcHh--hcCC-C------------------CCCCCCCcCcCchhhcccchhhc-----c-cHHHHHHHHHhhccCCEE
Confidence 544110 0000 0 233322 11111 111111 0 112233344455678899
Q ss_pred EEcChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccc
Q 010775 235 IIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIF 314 (501)
Q Consensus 235 l~~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~ 314 (501)
++|||.+||+.++++++..++++++.|||+..... . . +....++++.+|||.+++++||||||||...
T Consensus 197 lvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~----------~-~-~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~ 264 (446)
T PLN00414 197 SIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQ----------N-K-SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFF 264 (446)
T ss_pred EEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcc----------c-c-cCcccHHHHHHHHhcCCCCceEEEeeccccc
Confidence 99999999999999998866555999999964221 1 0 0011235699999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC-CCCCCchHHHHHhccCCeee-cccChHHhhcCCCccceEeccCchhHH
Q 010775 315 MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTG-ETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSIV 392 (501)
Q Consensus 315 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~-~~~~~p~~~~~~~~~n~~~~-~~vpq~~lL~~~~~~~~I~HGG~gs~~ 392 (501)
...+++.++..+|+.++.+|+|+++.....+ ....+|++|.+|..++++++ +|+||.+||+|+++++|||||||||++
T Consensus 265 ~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~ 344 (446)
T PLN00414 265 FEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMW 344 (446)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHH
Confidence 9999999999999999999999998632111 12248999999998888775 999999999999999999999999999
Q ss_pred HhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC-CCccHHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHHHHH
Q 010775 393 ESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEA 469 (501)
Q Consensus 393 eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~-~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~~~~~~~~~ 469 (501)
||+++|||||++|+++||+.||+++++.+|+|+.+...+ ..++.++|+++|+++|.+ +.|++||++++++++.+.+
T Consensus 345 Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~- 423 (446)
T PLN00414 345 ESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS- 423 (446)
T ss_pred HHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999999977899999996410 248999999999999986 3478899999999999764
Q ss_pred hCCCCChHHHHHHHHHHHHhcCC
Q 010775 470 AAPHGSSSLNLDKLVNEILLSNK 492 (501)
Q Consensus 470 ~~~gg~~~~~~~~li~~~~~~~~ 492 (501)
+||++ ..+++||+++.....
T Consensus 424 --~gg~s-s~l~~~v~~~~~~~~ 443 (446)
T PLN00414 424 --PGLLS-GYADKFVEALENEVN 443 (446)
T ss_pred --CCCcH-HHHHHHHHHHHHhcc
Confidence 67744 338999999966543
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=4.8e-52 Score=428.73 Aligned_cols=418 Identities=15% Similarity=0.212 Sum_probs=298.6
Q ss_pred cEEEEE-cCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCC------CCC
Q 010775 11 VHAVCI-PSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPAS------SDE 83 (501)
Q Consensus 11 ~~il~~-~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~------~~~ 83 (501)
.||+++ |.++.||+..+..|+++|++|||+||++++..... ... ....+++...++...+.. ...
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YAS-------HLCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-ccc-------CCCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 468766 88899999999999999999999999998753211 000 012345555553111100 000
Q ss_pred CCC---cccH----HHHHHHHHHhh---c-chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHc-CCCeEEEe
Q 010775 84 SPT---AQDA----YSLGENIINNV---L-LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQL-GLPIVLFF 151 (501)
Q Consensus 84 ~~~---~~~~----~~~~~~~~~~~---~-~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~l-giP~v~~~ 151 (501)
... ..+. ......+...| + .+.+.++++. ++ .+||+||+|.+..|+..+|+++ ++|.|.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~------~kFDlvi~e~~~~c~~~la~~~~~~p~i~~s 165 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KN------NKFDLLVTEAFLDYPLVFSHLFGDAPVIQIS 165 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CC------CceeEEEecccchhHHHHHHHhCCCCEEEEc
Confidence 000 0000 01111222222 1 2344555531 13 3899999999888999999999 99998887
Q ss_pred ccchhHHHHHhhhh-hhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccc---cCCCcchHHHHHHH----
Q 010775 152 TISACSFMGFKQFQ-TFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQ---STDPKDMMFNLCVE---- 223 (501)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---- 223 (501)
++....... ...+ .+.+++|+|..... ..+.|++++|+.|+-...+..... .....+...+++..
T Consensus 166 s~~~~~~~~-~~~gg~p~~~syvP~~~~~------~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~ 238 (507)
T PHA03392 166 SGYGLAENF-ETMGAVSRHPVYYPNLWRS------KFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPT 238 (507)
T ss_pred CCCCchhHH-HhhccCCCCCeeeCCcccC------CCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCC
Confidence 765543322 3344 77788999987765 456899999988842111111000 01111222333221
Q ss_pred HHhhcccCcEEEEcChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCc
Q 010775 224 ATENASKASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKS 303 (501)
Q Consensus 224 ~~~~~~~~~~~l~~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~ 303 (501)
..+...+.+++++|+.+.+|++ |+. ++++++|||++.++.+.. ++ ++++.+|++.++ ++
T Consensus 239 ~~~l~~~~~l~lvns~~~~d~~-----rp~-~p~v~~vGgi~~~~~~~~-------~l-------~~~l~~fl~~~~-~g 297 (507)
T PHA03392 239 IRELRNRVQLLFVNVHPVFDNN-----RPV-PPSVQYLGGLHLHKKPPQ-------PL-------DDYLEEFLNNST-NG 297 (507)
T ss_pred HHHHHhCCcEEEEecCccccCC-----CCC-CCCeeeecccccCCCCCC-------CC-------CHHHHHHHhcCC-Cc
Confidence 3344567789999999888876 554 555999999987432110 22 557889998764 57
Q ss_pred eEEEeeccccc---cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCcc
Q 010775 304 VIYVNFGSFIF---MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIG 380 (501)
Q Consensus 304 ~V~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~ 380 (501)
+||+||||+.. .+.+.++.+++++++.+.+|||+++.... + ..+|+|+++.+|+||.+||+|++++
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-------~----~~~p~Nv~i~~w~Pq~~lL~hp~v~ 366 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-------A----INLPANVLTQKWFPQRAVLKHKNVK 366 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-------c----ccCCCceEEecCCCHHHHhcCCCCC
Confidence 99999999863 56788999999999999999999875331 1 1247799999999999999999999
Q ss_pred ceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHH
Q 010775 381 GFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAM 460 (501)
Q Consensus 381 ~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~ 460 (501)
+||||||+||+.||+++|||+|++|+++||+.||+|+ +++|+|+.+++ ..+++++|+++|+++++|++ ||+||+
T Consensus 367 ~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~--~~~t~~~l~~ai~~vl~~~~---y~~~a~ 440 (507)
T PHA03392 367 AFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDT--VTVSAAQLVLAIVDVIENPK---YRKNLK 440 (507)
T ss_pred EEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEecc--CCcCHHHHHHHHHHHhCCHH---HHHHHH
Confidence 9999999999999999999999999999999999999 78899999998 89999999999999999998 999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010775 461 EWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 491 (501)
Q Consensus 461 ~~~~~~~~~~~~gg~~~~~~~~li~~~~~~~ 491 (501)
++++.+++ +.-+..+.+-.-+|.+.+..
T Consensus 441 ~ls~~~~~---~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 441 ELRHLIRH---QPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHhCC
Confidence 99999997 44456677778888887765
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3e-53 Score=444.69 Aligned_cols=413 Identities=23% Similarity=0.366 Sum_probs=247.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc---c
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA---Q 88 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~---~ 88 (501)
|||++|. +.||+.++..|+++|++|||+||++++.... .+... ....+++..++...+......... .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 7889984 8899999999999999999999999874322 22211 123566766665443331000000 0
Q ss_pred ----------cHHHHHHHH-------HHhhcchHH--HHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010775 89 ----------DAYSLGENI-------INNVLLHPF--LDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (501)
Q Consensus 89 ----------~~~~~~~~~-------~~~~~~~~l--~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~ 149 (501)
.....+... ...| ...+ .++++.++.. ++|++|+|.+.+|+..+|+.+|+|.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~l~d~~l~~~l~~~------~fDlvI~d~f~~c~~~la~~l~iP~i~ 145 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSC-EDLLSDPELMEQLKSE------KFDLVISDAFDPCGLALAHYLGIPVII 145 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E---EEEETTSTTHHHHH------HHCT-EEEEEESSHHHHHHHHHHTHHH
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhh------ccccceEeeccchhHHHHHHhcCCeEE
Confidence 011111111 1111 1001 1222233332 899999999988999999999999988
Q ss_pred EeccchhHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCC----CcccccCCCcchHHHHH---H
Q 010775 150 FFTISACSFMGFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDL----PSFIQSTDPKDMMFNLC---V 222 (501)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~ 222 (501)
+.+............+.+.+++|+|..... ..+.+++++|+.|+..... ....... ..+...+.. .
T Consensus 146 ~~s~~~~~~~~~~~~g~p~~psyvP~~~s~------~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 218 (500)
T PF00201_consen 146 ISSSTPMYDLSSFSGGVPSPPSYVPSMFSD------FSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFPF 218 (500)
T ss_dssp HHHCCSCSCCTCCTSCCCTSTTSTTCBCCC------SGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-GG
T ss_pred EecccccchhhhhccCCCCChHHhcccccc------CCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhccccc
Confidence 765544332222222556778888887655 5568888998887421111 1111100 000000000 0
Q ss_pred HHHhhcccCcEEEEcChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCC
Q 010775 223 EATENASKASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPK 302 (501)
Q Consensus 223 ~~~~~~~~~~~~l~~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~ 302 (501)
...+.+.+.+++++|+.+.++.| ++..|+ +++||+++..+.+ ++ ++++.+|++...++
T Consensus 219 ~~~~~~~~~~l~l~ns~~~ld~p-----rp~~p~-v~~vGgl~~~~~~---------~l-------~~~~~~~~~~~~~~ 276 (500)
T PF00201_consen 219 SFRELLSNASLVLINSHPSLDFP-----RPLLPN-VVEVGGLHIKPAK---------PL-------PEELWNFLDSSGKK 276 (500)
T ss_dssp GCHHHHHHHHHCCSSTEEE---------HHHHCT-STTGCGC-S-------------TC-------HHHHHHHTSTTTTT
T ss_pred ccHHHHHHHHHHhhhccccCcCC-----cchhhc-ccccCcccccccc---------cc-------ccccchhhhccCCC
Confidence 11233345677888998877765 787776 9999999875443 33 45688899885567
Q ss_pred ceEEEeeccccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccc
Q 010775 303 SVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGG 381 (501)
Q Consensus 303 ~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~ 381 (501)
++|||||||+.. ++.+..+.++++|++.+++|||++++.. +. .+++|+++++|+||.+||+||++++
T Consensus 277 ~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~--------~~----~l~~n~~~~~W~PQ~~lL~hp~v~~ 344 (500)
T PF00201_consen 277 GVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP--------PE----NLPKNVLIVKWLPQNDLLAHPRVKL 344 (500)
T ss_dssp EEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH--------GC----HHHTTEEEESS--HHHHHTSTTEEE
T ss_pred CEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccc--------cc----cccceEEEeccccchhhhhccccee
Confidence 999999999975 4445588899999999999999998521 11 3478999999999999999999999
Q ss_pred eEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHH
Q 010775 382 FLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAME 461 (501)
Q Consensus 382 ~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 461 (501)
||||||+||+.||+++|||||++|+++||+.||+++ ++.|+|+.++. ..+|+++|.++|+++|+|++ |++||++
T Consensus 345 fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~--~~~~~~~l~~ai~~vl~~~~---y~~~a~~ 418 (500)
T PF00201_consen 345 FITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDK--NDLTEEELRAAIREVLENPS---YKENAKR 418 (500)
T ss_dssp EEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGG--GC-SHHHHHHHHHHHHHSHH---HHHHHHH
T ss_pred eeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEe--cCCcHHHHHHHHHHHHhhhH---HHHHHHH
Confidence 999999999999999999999999999999999999 77899999998 89999999999999999998 9999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010775 462 WKGLAEEAAAPHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 462 ~~~~~~~~~~~gg~~~~~~~~li~~~~~~ 490 (501)
++.++++- .-+..+.+-.-+|.+.++
T Consensus 419 ls~~~~~~---p~~p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 419 LSSLFRDR---PISPLERAVWWIEYVARH 444 (500)
T ss_dssp HHHTTT-----------------------
T ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHhc
Confidence 99999973 344555556666666654
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.1e-42 Score=353.50 Aligned_cols=381 Identities=19% Similarity=0.250 Sum_probs=259.6
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCC-CcccHHHHH
Q 010775 16 IPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP-TAQDAYSLG 94 (501)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~-~~~~~~~~~ 94 (501)
+.+|+.||++|++.||++|+++||+|+|++++.+.+.++.. |+.|..++...+......+ ...+...+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA----------GAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc----------CCEEEecCCcCccccccccccCcchHHHH
Confidence 35799999999999999999999999999999999988875 7888888865433200000 002333344
Q ss_pred HHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhhhhhcCCCC
Q 010775 95 ENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFP 174 (501)
Q Consensus 95 ~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 174 (501)
..+...+ ...+..+.+.+.. .+||+||+|.+++++..+|+++|||+|.+++.+..... .+.. ..|
T Consensus 71 ~~~~~~~-~~~~~~l~~~~~~------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----~~~~----~~~ 135 (392)
T TIGR01426 71 EKLLDEA-EDVLPQLEEAYKG------DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE----FEEM----VSP 135 (392)
T ss_pred HHHHHHH-HHHHHHHHHHhcC------CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc----cccc----ccc
Confidence 4444444 4444555554443 38999999998889999999999999998654321100 0000 001
Q ss_pred CCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHH------Hhh--cccCcEEEEcChhHhhHHH
Q 010775 175 VKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEA------TEN--ASKASAIIIHTFDALEQQV 246 (501)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~l~~s~~~le~~~ 246 (501)
.. .. .+........ .+.. + .+...+..... ... ......++..+.+.|++
T Consensus 136 ~~-~~---------~~~~~~~~~~----~~~~-~-----~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~-- 193 (392)
T TIGR01426 136 AG-EG---------SAEEGAIAER----GLAE-Y-----VARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP-- 193 (392)
T ss_pred cc-hh---------hhhhhccccc----hhHH-H-----HHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC--
Confidence 00 00 0000000000 0000 0 00000000000 000 11222345555444444
Q ss_pred HHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHHHH
Q 010775 247 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMG 326 (501)
Q Consensus 247 l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~a 326 (501)
.++.+|.+++++||+...+. +..+|....+++++||+||||+.......++.++++
T Consensus 194 ---~~~~~~~~~~~~Gp~~~~~~---------------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 249 (392)
T TIGR01426 194 ---AGETFDDSFTFVGPCIGDRK---------------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEA 249 (392)
T ss_pred ---CccccCCCeEEECCCCCCcc---------------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHH
Confidence 34568888999999864321 122366555667899999999876666788889999
Q ss_pred HHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhhhcCCceEecCC
Q 010775 327 LVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF 406 (501)
Q Consensus 327 l~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 406 (501)
+...+.+++|..+..... .. ....++|+.+.+|+||.++|+++++ +|||||.||+.|++++|+|+|++|.
T Consensus 250 l~~~~~~~i~~~g~~~~~-------~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~ 319 (392)
T TIGR01426 250 FRDLDWHVVLSVGRGVDP-------AD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQ 319 (392)
T ss_pred HhcCCCeEEEEECCCCCh-------hH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCC
Confidence 999999999988644211 11 1224679999999999999999998 9999999999999999999999999
Q ss_pred CCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 010775 407 TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNE 486 (501)
Q Consensus 407 ~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~ 486 (501)
..||+.||+++ +++|+|..+.. ..+++++|.++|++++.|++ |+++++++++.++. .+| ...+.++|+.
T Consensus 320 ~~dq~~~a~~l-~~~g~g~~l~~--~~~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~---~~~--~~~aa~~i~~ 388 (392)
T TIGR01426 320 GADQPMTARRI-AELGLGRHLPP--EEVTAEKLREAVLAVLSDPR---YAERLRKMRAEIRE---AGG--ARRAADEIEG 388 (392)
T ss_pred cccHHHHHHHH-HHCCCEEEecc--ccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH---cCC--HHHHHHHHHH
Confidence 99999999999 78899999987 78999999999999999987 99999999999996 233 3455555555
Q ss_pred HH
Q 010775 487 IL 488 (501)
Q Consensus 487 ~~ 488 (501)
+.
T Consensus 389 ~~ 390 (392)
T TIGR01426 389 FL 390 (392)
T ss_pred hh
Confidence 43
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.3e-42 Score=354.53 Aligned_cols=382 Identities=14% Similarity=0.139 Sum_probs=252.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCC-----
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP----- 85 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~----- 85 (501)
|||+|+++|+.||++|++.||++|++|||+|+|++++.+...++.. |++|..+++..+.......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA----------GLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc----------CCceeeCCCCHHHHHhhhhhcccc
Confidence 7999999999999999999999999999999999999888877764 7889888764322100000
Q ss_pred ---CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHh
Q 010775 86 ---TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFK 162 (501)
Q Consensus 86 ---~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (501)
...........+.+.+ ...++++++.+.. .+||+||+|.+.+++..+|+++|||++.+++++......
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-- 141 (401)
T cd03784 71 LLLGPGLLLGALRLLRREA-EAMLDDLVAAARD------WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-- 141 (401)
T ss_pred cccchHHHHHHHHHHHHHH-HHHHHHHHHHhcc------cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc--
Confidence 0111222233333333 4455566655443 389999999988899999999999999998775432111
Q ss_pred hhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhc---------ccCcE
Q 010775 163 QFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENA---------SKASA 233 (501)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 233 (501)
..|.. . + .+.. .............+........... .....
T Consensus 142 ---------~~~~~--~---------------~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 191 (401)
T cd03784 142 ---------FPPPL--G---------------R-ANLR---LYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVP 191 (401)
T ss_pred ---------CCCcc--c---------------h-HHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCc
Confidence 00000 0 0 0000 0000000000000000000000000 01112
Q ss_pred EEEcChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeecccc
Q 010775 234 IIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFI 313 (501)
Q Consensus 234 ~l~~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~ 313 (501)
.+....+. +..+.+.++.+..++|.....+.. . +..++++..|++. ++++|||||||+.
T Consensus 192 ~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~-----------~---~~~~~~~~~~~~~--~~~~v~v~~Gs~~ 250 (401)
T cd03784 192 ELYGFSPA-----VLPPPPDWPRFDLVTGYGFRDVPY-----------N---GPPPPELWLFLAA--GRPPVYVGFGSMV 250 (401)
T ss_pred EEEecCcc-----cCCCCCCccccCcEeCCCCCCCCC-----------C---CCCCHHHHHHHhC--CCCcEEEeCCCCc
Confidence 22221111 111235577767788643222111 0 0124457778876 4579999999997
Q ss_pred cc-CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHH
Q 010775 314 FM-NKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIV 392 (501)
Q Consensus 314 ~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ 392 (501)
.. .......+++++...+.++||+.+...... ...++|+++.+|+||.++|+++++ ||||||+||++
T Consensus 251 ~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~----------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~ 318 (401)
T cd03784 251 VRDPEALARLDVEAVATLGQRAILSLGWGGLGA----------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTA 318 (401)
T ss_pred ccCHHHHHHHHHHHHHHcCCeEEEEccCccccc----------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHH
Confidence 54 456778899999999999999987543211 123679999999999999999999 99999999999
Q ss_pred HhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCC
Q 010775 393 ESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAP 472 (501)
Q Consensus 393 eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~ 472 (501)
|++++|||+|++|+..||+.||+++ +++|+|+.++. ..+++++|.++|+++++++ +++++++.++.+++
T Consensus 319 eal~~GvP~v~~P~~~dQ~~~a~~~-~~~G~g~~l~~--~~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~---- 387 (401)
T cd03784 319 AALRAGVPQLVVPFFGDQPFWAARV-AELGAGPALDP--RELTAERLAAALRRLLDPP----SRRRAAALLRRIRE---- 387 (401)
T ss_pred HHHHcCCCEEeeCCCCCcHHHHHHH-HHCCCCCCCCc--ccCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh----
Confidence 9999999999999999999999999 88899999987 6789999999999999965 66777777777764
Q ss_pred CCChHHHHHHHHHH
Q 010775 473 HGSSSLNLDKLVNE 486 (501)
Q Consensus 473 gg~~~~~~~~li~~ 486 (501)
..+...+.++|++
T Consensus 388 -~~g~~~~~~~ie~ 400 (401)
T cd03784 388 -EDGVPSAADVIER 400 (401)
T ss_pred -ccCHHHHHHHHhh
Confidence 2234555666554
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-41 Score=338.47 Aligned_cols=399 Identities=20% Similarity=0.234 Sum_probs=257.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCccc
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQD 89 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 89 (501)
+|||+++..|+.||++|+++||++|.++||+|+|++++.+.+.++++ ++.|..++...... ...+...+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a----------g~~f~~~~~~~~~~-~~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA----------GLAFVAYPIRDSEL-ATEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh----------CcceeeccccCChh-hhhhhhhh
Confidence 58999999999999999999999999999999999999999999987 56677776431111 00111111
Q ss_pred -HHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhhhh
Q 010775 90 -AYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (501)
Q Consensus 90 -~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (501)
...+.. ..... .....++++-+.+. .+|+++.|.....+ .+++..++|++...............
T Consensus 70 ~~~~~~~-~~~~~-~~~~~~~~~~~~e~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----- 135 (406)
T COG1819 70 GVKSFRR-LLQQF-KKLIRELLELLREL------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL----- 135 (406)
T ss_pred ccchhHH-Hhhhh-hhhhHHHHHHHHhc------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----
Confidence 111221 22222 33344544445543 88999999766444 88999999998875553332221110
Q ss_pred hcCCCCCCCccchhhhhcccccccCCCCC-CCCcCCCCcccccCCC--cchHHHH-HHHHHhhcccCcEEEEcChhHhhH
Q 010775 169 EKGLFPVKDKSCLTKEYLNSLIDWIPGMK-DIRIRDLPSFIQSTDP--KDMMFNL-CVEATENASKASAIIIHTFDALEQ 244 (501)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~s~~~le~ 244 (501)
..++....+.. .....+-.. ...+......+..... ....... ..+..+.+.......+...++..+
T Consensus 136 --~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (406)
T COG1819 136 --PLPPVGIAGKL-------PIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFP 206 (406)
T ss_pred --Ccccccccccc-------cccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccC
Confidence 00010000000 000000000 0000000000000000 0000000 000011111111111111111101
Q ss_pred HHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHH
Q 010775 245 QVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 324 (501)
Q Consensus 245 ~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~ 324 (501)
+ ...+|....++||+...+. .++..|.. .++++||+|+||.... .++++.++
T Consensus 207 ~-----~~~~p~~~~~~~~~~~~~~--------------------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~ 258 (406)
T COG1819 207 P-----GDRLPFIGPYIGPLLGEAA--------------------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVL 258 (406)
T ss_pred C-----CCCCCCCcCcccccccccc--------------------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHH
Confidence 0 0124555667777654332 22334433 3567999999999866 88899999
Q ss_pred HHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHHhhhcCCceEec
Q 010775 325 MGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 404 (501)
Q Consensus 325 ~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 404 (501)
+++..++.++|...+. ... . ...+|+|+++.+|+||.++|+++++ ||||||+||+.|||++|||+|++
T Consensus 259 ~a~~~l~~~vi~~~~~-~~~-~--------~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~ 326 (406)
T COG1819 259 EALADLDVRVIVSLGG-ARD-T--------LVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVI 326 (406)
T ss_pred HHHhcCCcEEEEeccc-ccc-c--------cccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEe
Confidence 9999999999998865 211 0 1234779999999999999999999 99999999999999999999999
Q ss_pred CCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 010775 405 PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 484 (501)
Q Consensus 405 P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li 484 (501)
|...||+.||.|+ ++.|+|..+.. ..++++.|+++|+++|.|+. |+++++++++++++ ++| ...+.++|
T Consensus 327 P~~~DQ~~nA~rv-e~~G~G~~l~~--~~l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~---~~g--~~~~a~~l 395 (406)
T COG1819 327 PDGADQPLNAERV-EELGAGIALPF--EELTEERLRAAVNEVLADDS---YRRAAERLAEEFKE---EDG--PAKAADLL 395 (406)
T ss_pred cCCcchhHHHHHH-HHcCCceecCc--ccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhh---ccc--HHHHHHHH
Confidence 9999999999999 88999999998 89999999999999999998 99999999999997 344 67788888
Q ss_pred HHHHhcCCC
Q 010775 485 NEILLSNKH 493 (501)
Q Consensus 485 ~~~~~~~~~ 493 (501)
++..+.+..
T Consensus 396 e~~~~~~~~ 404 (406)
T COG1819 396 EEFAREKKK 404 (406)
T ss_pred HHHHhcccC
Confidence 887765443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=9e-42 Score=357.87 Aligned_cols=428 Identities=29% Similarity=0.443 Sum_probs=264.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCC---CCCCCeeEEeCCCCCCCCCCCCCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSL---DGLPSFRFEAIPDGLPASSDESPT 86 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~l~~~~~~~~~~~~~ 86 (501)
+.+++++++|+.||++|+..+|+.|+++||+||++++.......... ..... .....+.+...+++++.. ...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 80 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEG---WED 80 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccc---hHH
Confidence 56899999999999999999999999999999999987665543221 10000 000111222222223332 111
Q ss_pred c-ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcC-CCeEEEeccchhHHHHHhhh
Q 010775 87 A-QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLG-LPIVLFFTISACSFMGFKQF 164 (501)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~ 164 (501)
. .+.......+...| ...+.+....+... ...++|++|+|.+..+...++...+ ++...+.+..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---- 152 (496)
T KOG1192|consen 81 DDLDISESLLELNKTC-EDLLRDPLEKLLLL---KSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL---- 152 (496)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhchHHHHHHh---hcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc----
Confidence 0 01111123334444 33343322222211 0124999999998767777776665 8888887776655443
Q ss_pred hhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHH-----------HHHhhcccCcE
Q 010775 165 QTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCV-----------EATENASKASA 233 (501)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 233 (501)
+.+.+..++|...... ..+.+++..+..++....++................. .......+.+.
T Consensus 153 g~~~~~~~~p~~~~~~-----~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 227 (496)
T KOG1192|consen 153 GLPSPLSYVPSPFSLS-----SGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASF 227 (496)
T ss_pred CCcCcccccCcccCcc-----ccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeE
Confidence 2222333555543320 1123343444333222222211111000000000010 11123344556
Q ss_pred EEEcChhHhhHHHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCC--ceEEEeecc
Q 010775 234 IIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPK--SVIYVNFGS 311 (501)
Q Consensus 234 ~l~~s~~~le~~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~--~~V~vs~Gs 311 (501)
.++|+...++.+ +++..+ ++++|||++....... ...+.+|++..+.. ++|||||||
T Consensus 228 ~~ln~~~~~~~~----~~~~~~-~v~~IG~l~~~~~~~~----------------~~~~~~wl~~~~~~~~~vvyvSfGS 286 (496)
T KOG1192|consen 228 IFLNSNPLLDFE----PRPLLP-KVIPIGPLHVKDSKQK----------------SPLPLEWLDILDESRHSVVYISFGS 286 (496)
T ss_pred EEEccCcccCCC----CCCCCC-CceEECcEEecCcccc----------------ccccHHHHHHHhhccCCeEEEECCc
Confidence 677775544441 123334 4999999987532110 01245676655444 899999999
Q ss_pred cc---ccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHh-hcCCCccceEecc
Q 010775 312 FI---FMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEV-LKHPSIGGFLTHC 386 (501)
Q Consensus 312 ~~---~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~l-L~~~~~~~~I~HG 386 (501)
++ .++.+....++.+++.. +.+|||+++...... +++++.++.++|+...+|+||.++ |.|+++++|||||
T Consensus 287 ~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~----~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHg 362 (496)
T KOG1192|consen 287 MVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIY----FPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHG 362 (496)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchh----hhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECC
Confidence 98 78999999999999999 788999998653211 122222212457888999999998 5999999999999
Q ss_pred CchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Q 010775 387 GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLA 466 (501)
Q Consensus 387 G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~ 466 (501)
|+||+.|++++|||+|++|+++||+.||++++++ |.|..+.. .+++.+.+..++.+++++++ |+++++++++..
T Consensus 363 G~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~--~~~~~~~~~~~~~~il~~~~---y~~~~~~l~~~~ 436 (496)
T KOG1192|consen 363 GWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDK--RDLVSEELLEAIKEILENEE---YKEAAKRLSEIL 436 (496)
T ss_pred cccHHHHHHhcCCceecCCccccchhHHHHHHhC-CCEEEEeh--hhcCcHHHHHHHHHHHcChH---HHHHHHHHHHHH
Confidence 9999999999999999999999999999999555 55555555 56766669999999999998 999999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHh
Q 010775 467 EEAAAPHGSSSLNLDKLVNEILL 489 (501)
Q Consensus 467 ~~~~~~gg~~~~~~~~li~~~~~ 489 (501)
++ ...+. ..+..-+|...+
T Consensus 437 ~~---~p~~~-~~~~~~~e~~~~ 455 (496)
T KOG1192|consen 437 RD---QPISP-ELAVKWVEFVAR 455 (496)
T ss_pred Hc---CCCCH-HHHHHHHHHHHh
Confidence 86 44554 555533444444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.93 E-value=1.2e-23 Score=209.21 Aligned_cols=319 Identities=18% Similarity=0.185 Sum_probs=197.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCC-CCCCCCCCCCCcccH
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD-GLPASSDESPTAQDA 90 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~-~~~~~~~~~~~~~~~ 90 (501)
+|++..-|+.||+.|.+++|++|.++||+|+|++.....+. + .....++.+..++. ++... ..+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~------l~~~~g~~~~~~~~~~l~~~-------~~~ 67 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--T------IIEKENIPYYSISSGKLRRY-------FDL 67 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--c------cCcccCCcEEEEeccCcCCC-------chH
Confidence 57777777779999999999999999999999997654321 0 12233677777762 22111 111
Q ss_pred HHHHHHHHHhhcc--hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEeccchhHHHHHhhhhh
Q 010775 91 YSLGENIINNVLL--HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTISACSFMGFKQFQT 166 (501)
Q Consensus 91 ~~~~~~~~~~~~~--~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 166 (501)
. .+....... . -....++++. +||+|++..-+. .+..+|..+++|++......
T Consensus 68 ~-~~~~~~~~~-~~~~~~~~i~~~~---------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------ 124 (352)
T PRK12446 68 K-NIKDPFLVM-KGVMDAYVRIRKL---------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------ 124 (352)
T ss_pred H-HHHHHHHHH-HHHHHHHHHHHhc---------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC------------
Confidence 1 122222211 1 1223445553 999999976444 36889999999998862221
Q ss_pred hhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHH
Q 010775 167 FKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQV 246 (501)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 246 (501)
.+++.| +.+.+. .+.+ +.+|++.
T Consensus 125 --------------------------~~g~~n--------------------r~~~~~------a~~v-~~~f~~~---- 147 (352)
T PRK12446 125 --------------------------TPGLAN--------------------KIALRF------ASKI-FVTFEEA---- 147 (352)
T ss_pred --------------------------CccHHH--------------------HHHHHh------hCEE-EEEccch----
Confidence 222111 111111 1112 2222221
Q ss_pred HHHHhhhCC-CceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccC-HHHHHHHH
Q 010775 247 LNALSFMFP-HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN-KQQLIEVA 324 (501)
Q Consensus 247 l~~~~~~~p-~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~ 324 (501)
...++ .+++++|+.....-. .. ..++..+.+.-.+++++|+|..||..... .+.+..++
T Consensus 148 ----~~~~~~~k~~~tG~Pvr~~~~------------~~---~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l 208 (352)
T PRK12446 148 ----AKHLPKEKVIYTGSPVREEVL------------KG---NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREAL 208 (352)
T ss_pred ----hhhCCCCCeEEECCcCCcccc------------cc---cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHH
Confidence 12233 358899975432110 00 01111122222235679999999996433 23344444
Q ss_pred HHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeeccc-C-hHHhhcCCCccceEeccCchhHHHhhhcCCceE
Q 010775 325 MGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC-P-QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 402 (501)
Q Consensus 325 ~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~v-p-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v 402 (501)
..+.. +.+++|+.+.+..+ + ...+ ..++.+.+|+ + -.++|.++++ +|||||.+|+.|++++|+|+|
T Consensus 209 ~~l~~-~~~vv~~~G~~~~~-------~-~~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I 276 (352)
T PRK12446 209 PELLL-KYQIVHLCGKGNLD-------D-SLQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPML 276 (352)
T ss_pred Hhhcc-CcEEEEEeCCchHH-------H-HHhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEE
Confidence 44432 36888988754311 1 1111 1255667887 4 3469999999 999999999999999999999
Q ss_pred ecCCC-----CchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHH
Q 010775 403 CWPFT-----GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAME 461 (501)
Q Consensus 403 ~~P~~-----~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 461 (501)
++|+. .||..||+.+ ++.|+|..+.. .+++++.|.++|.++++|++ .|++++++
T Consensus 277 ~iP~~~~~~~~~Q~~Na~~l-~~~g~~~~l~~--~~~~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 277 LIPLSKFASRGDQILNAESF-ERQGYASVLYE--EDVTVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred EEcCCCCCCCchHHHHHHHH-HHCCCEEEcch--hcCCHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 99984 4899999999 77899999987 89999999999999998864 26554444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.91 E-value=8.1e-23 Score=201.97 Aligned_cols=306 Identities=18% Similarity=0.213 Sum_probs=190.8
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCccc
Q 010775 11 VHAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQD 89 (501)
Q Consensus 11 ~~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 89 (501)
|||++...+ +.||+..+++||++| |||+|+|++.....+.+.+ .+.+..+++-.... .....+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----------RFPVREIPGLGPIQ---ENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----------ccCEEEccCceEec---cCCccc
Confidence 799999998 669999999999999 5999999998765554432 23455554321111 111111
Q ss_pred HHHHHHHH---HHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhh
Q 010775 90 AYSLGENI---INNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQT 166 (501)
Q Consensus 90 ~~~~~~~~---~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 166 (501)
........ .... ...++++.+.++.. +||+||+|. .+.+..+|+..|||++.+..........
T Consensus 65 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~------ 130 (318)
T PF13528_consen 65 RWKTVRNNIRWLARL-ARRIRREIRWLREF------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN------ 130 (318)
T ss_pred hHHHHHHHHHhhHHH-HHHHHHHHHHHHhc------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc------
Confidence 11111111 1111 23344444445443 899999994 5567889999999999985553211000
Q ss_pred hhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHh--hcccCcEEEEcChhHhhH
Q 010775 167 FKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATE--NASKASAIIIHTFDALEQ 244 (501)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~le~ 244 (501)
.. .+. ............. ....+...+.-++. .
T Consensus 131 ----~~--------------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-- 165 (318)
T PF13528_consen 131 ----FW--------------------LPW------------------DQDFGRLIERYIDRYHFPPADRRLALSFY-P-- 165 (318)
T ss_pred ----CC--------------------cch------------------hhhHHHHHHHhhhhccCCcccceecCCcc-c--
Confidence 00 000 0000011111111 12233333333332 1
Q ss_pred HHHHHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHH
Q 010775 245 QVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 324 (501)
Q Consensus 245 ~~l~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~ 324 (501)
+ .. ...++.++||+...... +... .+++.|+|+||..... .++
T Consensus 166 ~-----~~-~~~~~~~~~p~~~~~~~-----------------------~~~~--~~~~~iLv~~gg~~~~------~~~ 208 (318)
T PF13528_consen 166 P-----LP-PFFRVPFVGPIIRPEIR-----------------------ELPP--EDEPKILVYFGGGGPG------DLI 208 (318)
T ss_pred c-----cc-ccccccccCchhccccc-----------------------ccCC--CCCCEEEEEeCCCcHH------HHH
Confidence 1 01 12226678887632211 0111 1346899999988532 566
Q ss_pred HHHHhCC-CCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeeccc--ChHHhhcCCCccceEeccCchhHHHhhhcCCce
Q 010775 325 MGLVNSN-HPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC--PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPM 401 (501)
Q Consensus 325 ~al~~~~-~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~v--pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 401 (501)
++++..+ ..+++. +.... +...+|+.+.++. +..++|..+++ +|+|||.||++|++++|+|+
T Consensus 209 ~~l~~~~~~~~~v~-g~~~~------------~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~ 273 (318)
T PF13528_consen 209 EALKALPDYQFIVF-GPNAA------------DPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPA 273 (318)
T ss_pred HHHHhCCCCeEEEE-cCCcc------------cccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCE
Confidence 7777776 455554 43321 0115688888876 45679999999 99999999999999999999
Q ss_pred EecCC--CCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHH
Q 010775 402 ICWPF--TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 446 (501)
Q Consensus 402 v~~P~--~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~v 446 (501)
|++|. ..+|..||+++ +++|+|+.++. .+++++.|+++|+++
T Consensus 274 l~ip~~~~~EQ~~~a~~l-~~~G~~~~~~~--~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 274 LVIPRPGQDEQEYNARKL-EELGLGIVLSQ--EDLTPERLAEFLERL 317 (318)
T ss_pred EEEeCCCCchHHHHHHHH-HHCCCeEEccc--ccCCHHHHHHHHhcC
Confidence 99999 78999999999 88999999987 899999999999864
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.6e-20 Score=184.62 Aligned_cols=314 Identities=18% Similarity=0.206 Sum_probs=195.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCccc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGF-HITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQD 89 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 89 (501)
++|+++..++.||+.|-++|+++|.++|+ +|.++.+....+... ....++.+..++.+-... .. ....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l--------~~~~~~~~~~I~~~~~~~--~~-~~~~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFL--------VKQYGIEFELIPSGGLRR--KG-SLKL 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeee--------ccccCceEEEEecccccc--cC-cHHH
Confidence 47888888899999999999999999999 688887655444221 223467777776432222 01 1111
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEeccchhHHHHHhhhhhh
Q 010775 90 AYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (501)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (501)
+...+..+... .+..++++++ +||+||.-.-+. .+..+|..+|||++..-.
T Consensus 70 ~~~~~~~~~~~---~~a~~il~~~---------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq--------------- 122 (357)
T COG0707 70 LKAPFKLLKGV---LQARKILKKL---------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ--------------- 122 (357)
T ss_pred HHHHHHHHHHH---HHHHHHHHHc---------CCCEEEecCCccccHHHHHHHhCCCCEEEEec---------------
Confidence 22222222222 2445666665 999999865444 678899999999999622
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHHH
Q 010775 168 KEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (501)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~l 247 (501)
+..+++.|-.. .+. ++ .+..+|+..+.
T Consensus 123 -----------------------n~~~G~ank~~--------------------~~~------a~-~V~~~f~~~~~--- 149 (357)
T COG0707 123 -----------------------NAVPGLANKIL--------------------SKF------AK-KVASAFPKLEA--- 149 (357)
T ss_pred -----------------------CCCcchhHHHh--------------------HHh------hc-eeeeccccccc---
Confidence 22333322000 000 00 11122221000
Q ss_pred HHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccC-HHHHHHHHHH
Q 010775 248 NALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN-KQQLIEVAMG 326 (501)
Q Consensus 248 ~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~a 326 (501)
..-+.++..+|--.... +. +.+..-..+... .++++|+|.-||+.... .+.+..+...
T Consensus 150 ----~~~~~~~~~tG~Pvr~~------------~~----~~~~~~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~ 208 (357)
T COG0707 150 ----GVKPENVVVTGIPVRPE------------FE----ELPAAEVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAK 208 (357)
T ss_pred ----cCCCCceEEecCcccHH------------hh----ccchhhhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHH
Confidence 11122377777422111 00 000001111111 15679999999996322 3344444444
Q ss_pred HHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhc-cC-CeeecccChH-HhhcCCCccceEeccCchhHHHhhhcCCceEe
Q 010775 327 LVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EK-GFVASWCPQE-EVLKHPSIGGFLTHCGWNSIVESLCSGVPMIC 403 (501)
Q Consensus 327 l~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~-~n-~~~~~~vpq~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~ 403 (501)
+.. +..++++.+.+.. +....... .+ +.+.+|.+.. ++|+.+++ +||++|.+|+.|.+++|+|+|.
T Consensus 209 l~~-~~~v~~~~G~~~~--------~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~Il 277 (357)
T COG0707 209 LAN-RIQVIHQTGKNDL--------EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAIL 277 (357)
T ss_pred hhh-CeEEEEEcCcchH--------HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEE
Confidence 444 4677787775431 11121111 22 6778898876 49999999 9999999999999999999999
Q ss_pred cCC-C---CchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 404 WPF-T---GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 404 ~P~-~---~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
+|+ . .||..||+.+ ++.|.|..++. .++|.+.+.+.|.++++++
T Consensus 278 iP~p~~~~~~Q~~NA~~l-~~~gaa~~i~~--~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 278 VPYPPGADGHQEYNAKFL-EKAGAALVIRQ--SELTPEKLAELILRLLSNP 325 (357)
T ss_pred eCCCCCccchHHHHHHHH-HhCCCEEEecc--ccCCHHHHHHHHHHHhcCH
Confidence 997 2 4899999999 78899999998 8999999999999999974
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=4.7e-21 Score=189.20 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=91.6
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccC--hHHhhcCCCc
Q 010775 302 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP--QEEVLKHPSI 379 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vp--q~~lL~~~~~ 379 (501)
++.|++.+|+... ..++++++..+. +.+++..... ... .+++|+.+.+|.| ..+.|..+++
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~------~~~----~~~~~v~~~~~~~~~~~~~l~~ad~ 250 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV------AKN----SYNENVEIRRITTDNFKELIKNAEL 250 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC------Ccc----ccCCCEEEEECChHHHHHHHHhCCE
Confidence 4577887888532 345667766653 2233222111 111 2356889999997 4568888888
Q ss_pred cceEeccCchhHHHhhhcCCceEecCCCC--chhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 380 GGFLTHCGWNSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 380 ~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
+|||||.+|+.|++++|+|++++|..+ ||..||+.+ ++.|+|+.++. .++ ++.+++.++++++.
T Consensus 251 --vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~--~~~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 251 --VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEY--KEL---RLLEAILDIRNMKR 316 (321)
T ss_pred --EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcCh--hhH---HHHHHHHhcccccc
Confidence 999999999999999999999999955 899999999 77899999976 555 66667777777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.80 E-value=4.1e-17 Score=163.90 Aligned_cols=341 Identities=15% Similarity=0.128 Sum_probs=193.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCC-CCCCCCCCCCCccc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD-GLPASSDESPTAQD 89 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~-~~~~~~~~~~~~~~ 89 (501)
|||+++..+..||....+.|++.|.++||+|++++.+..... .. ....+++++.++. ++... . ....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~~~---~-~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA-RL-------VPKAGIEFHFIPSGGLRRK---G-SLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-hc-------cccCCCcEEEEeccCcCCC---C-hHHH
Confidence 689999988889999999999999999999999987542110 00 1113566666652 11111 0 0000
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCc--chHHHHHHHcCCCeEEEeccchhHHHHHhhhhhh
Q 010775 90 AYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFL--PFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF 167 (501)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (501)
+...... ... ...+.+++++ .+||+|++.... ..+..+++..++|++......
T Consensus 70 l~~~~~~-~~~--~~~~~~~ik~---------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------- 124 (357)
T PRK00726 70 LKAPFKL-LKG--VLQARKILKR---------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------- 124 (357)
T ss_pred HHHHHHH-HHH--HHHHHHHHHh---------cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------
Confidence 1111111 111 1233444444 289999999632 245667888899998641110
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHHH
Q 010775 168 KEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (501)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~l 247 (501)
+++ ...+... ..++.+++.+...+
T Consensus 125 -------------------------~~~--------------------~~~r~~~------~~~d~ii~~~~~~~----- 148 (357)
T PRK00726 125 -------------------------VPG--------------------LANKLLA------RFAKKVATAFPGAF----- 148 (357)
T ss_pred -------------------------Ccc--------------------HHHHHHH------HHhchheECchhhh-----
Confidence 000 0001110 11222233322111
Q ss_pred HHHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHHHHH
Q 010775 248 NALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGL 327 (501)
Q Consensus 248 ~~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al 327 (501)
. ...+.++.++|........ . + ...-.++ .-.++..+|++..|+... ......+.+++
T Consensus 149 ~---~~~~~~i~vi~n~v~~~~~---------~-~------~~~~~~~-~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~ 206 (357)
T PRK00726 149 P---EFFKPKAVVTGNPVREEIL---------A-L------AAPPARL-AGREGKPTLLVVGGSQGA--RVLNEAVPEAL 206 (357)
T ss_pred h---ccCCCCEEEECCCCChHhh---------c-c------cchhhhc-cCCCCCeEEEEECCcHhH--HHHHHHHHHHH
Confidence 0 0233458888865422110 0 0 0000111 111233466665555421 11222333555
Q ss_pred HhCCC--CEEEEEcCCCCCCCCCCCchHHHHH--hccCCeeecccC-hHHhhcCCCccceEeccCchhHHHhhhcCCceE
Q 010775 328 VNSNH--PFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCP-QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 402 (501)
Q Consensus 328 ~~~~~--~~i~~~~~~~~~~~~~~~p~~~~~~--~~~n~~~~~~vp-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v 402 (501)
.+... .++|.++.+.. +...+. ..-++.+.+|+. ..++|..+++ +|+|+|.+++.|++++|+|+|
T Consensus 207 ~~~~~~~~~~~~~G~g~~--------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv 276 (357)
T PRK00726 207 ALLPEALQVIHQTGKGDL--------EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAI 276 (357)
T ss_pred HHhhhCcEEEEEcCCCcH--------HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEE
Confidence 44433 34555554321 122211 222367788884 4679999999 999999999999999999999
Q ss_pred ecCC----CCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHH
Q 010775 403 CWPF----TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSL 478 (501)
Q Consensus 403 ~~P~----~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~ 478 (501)
++|. .+||..|+..+ .+.|.|..++. ..++++.|+++|.++++|++ +++++.+-+.... +..+...
T Consensus 277 ~~~~~~~~~~~~~~~~~~i-~~~~~g~~~~~--~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~----~~~~~~~ 346 (357)
T PRK00726 277 LVPLPHAADDHQTANARAL-VDAGAALLIPQ--SDLTPEKLAEKLLELLSDPE---RLEAMAEAARALG----KPDAAER 346 (357)
T ss_pred EecCCCCCcCcHHHHHHHH-HHCCCEEEEEc--ccCCHHHHHHHHHHHHcCHH---HHHHHHHHHHhcC----CcCHHHH
Confidence 9997 36899999999 67799999987 67889999999999999987 6655555444333 2344444
Q ss_pred HHHHHHHH
Q 010775 479 NLDKLVNE 486 (501)
Q Consensus 479 ~~~~li~~ 486 (501)
.++.+++.
T Consensus 347 ~~~~~~~~ 354 (357)
T PRK00726 347 LADLIEEL 354 (357)
T ss_pred HHHHHHHH
Confidence 44444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.76 E-value=4e-16 Score=156.26 Aligned_cols=314 Identities=17% Similarity=0.149 Sum_probs=181.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCC-CCCCCCCCCCcccH
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDG-LPASSDESPTAQDA 90 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~-~~~~~~~~~~~~~~ 90 (501)
+|++...+..||+...+.|++.|.++||+|++++...... .. .....++++..++-. +... .....+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-AR-------LVPKAGIPLHTIPVGGLRRK----GSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hh-------cccccCCceEEEEecCcCCC----ChHHHH
Confidence 4788888888999999999999999999999998753211 10 011235666666521 1111 011111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEeccchhHHHHHhhhhhhh
Q 010775 91 YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTISACSFMGFKQFQTFK 168 (501)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (501)
..++..+ . . ...+.+++++ .+||+|++..... .+..+|...|+|++......
T Consensus 69 ~~~~~~~-~-~-~~~~~~~i~~---------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-------------- 122 (350)
T cd03785 69 KAPFKLL-K-G-VLQARKILKK---------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-------------- 122 (350)
T ss_pred HHHHHHH-H-H-HHHHHHHHHh---------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC--------------
Confidence 1122111 1 1 1234445544 2899999875332 46677889999998631100
Q ss_pred hcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHHHH
Q 010775 169 EKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLN 248 (501)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~l~ 248 (501)
+++. ..+.. ....+.+++.+....+.
T Consensus 123 ------------------------~~~~--------------------~~~~~------~~~~~~vi~~s~~~~~~---- 148 (350)
T cd03785 123 ------------------------VPGL--------------------ANRLL------ARFADRVALSFPETAKY---- 148 (350)
T ss_pred ------------------------CccH--------------------HHHHH------HHhhCEEEEcchhhhhc----
Confidence 0000 00000 11234455554322211
Q ss_pred HHhhhCCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccC-HHHHHHHHHHH
Q 010775 249 ALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMN-KQQLIEVAMGL 327 (501)
Q Consensus 249 ~~~~~~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al 327 (501)
..+.++.++|......... + .+. .+.+...+++.+|++..|+..... .+.+..++..+
T Consensus 149 ----~~~~~~~~i~n~v~~~~~~--------~--------~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l 207 (350)
T cd03785 149 ----FPKDKAVVTGNPVREEILA--------L--------DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAEL 207 (350)
T ss_pred ----CCCCcEEEECCCCchHHhh--------h--------hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 1234577787643211000 0 001 112222223445666566653221 12222333344
Q ss_pred HhCCCCEEEEEcCCCCCCCCCCCchHHHHH---hccCCeeeccc-ChHHhhcCCCccceEeccCchhHHHhhhcCCceEe
Q 010775 328 VNSNHPFLWIIRPDLVTGETADLPAEFEVK---AKEKGFVASWC-PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMIC 403 (501)
Q Consensus 328 ~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~---~~~n~~~~~~v-pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~ 403 (501)
...+..+++.++.+.. +.+.+. ..+|+.+.+|+ +..++|..+++ +|+++|.+|+.||+++|+|+|+
T Consensus 208 ~~~~~~~~~i~G~g~~--------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~ 277 (350)
T cd03785 208 LRKRLQVIHQTGKGDL--------EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAIL 277 (350)
T ss_pred hccCeEEEEEcCCccH--------HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEE
Confidence 3323345566654321 222222 23588899998 45679999999 9999999999999999999999
Q ss_pred cCC----CCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 404 WPF----TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 404 ~P~----~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
.|. ..+|..|+..+ .+.|.|..++. ...+.++|.++|.++++|++
T Consensus 278 ~~~~~~~~~~~~~~~~~l-~~~g~g~~v~~--~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 278 IPLPYAADDHQTANARAL-VKAGAAVLIPQ--EELTPERLAAALLELLSDPE 326 (350)
T ss_pred eecCCCCCCcHHHhHHHH-HhCCCEEEEec--CCCCHHHHHHHHHHHhcCHH
Confidence 986 35788999998 56799999975 55799999999999998765
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.67 E-value=9.2e-14 Score=139.03 Aligned_cols=78 Identities=17% Similarity=0.408 Sum_probs=68.0
Q ss_pred ChHHhhcCCCccceEeccCchhHHHhhhcCCceEecCCC---CchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHH
Q 010775 369 PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFT---GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 445 (501)
Q Consensus 369 pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~ 445 (501)
+..++|..+++ +|+++|.+|+.||+++|+|+|+.|.. .+|..|+..+ ...+.|..++. ...++++|.++|.+
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~--~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQ--KELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEec--ccCCHHHHHHHHHH
Confidence 45679999999 99999988999999999999999873 4678888888 66799998876 67789999999999
Q ss_pred HhcChh
Q 010775 446 MMEGEK 451 (501)
Q Consensus 446 vl~~~~ 451 (501)
+++|++
T Consensus 318 ll~~~~ 323 (348)
T TIGR01133 318 LLLDPA 323 (348)
T ss_pred HHcCHH
Confidence 999876
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.65 E-value=2.3e-14 Score=144.71 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=80.8
Q ss_pred hHHhhcCCCccceEeccCchhHHHhhhcCCceEec----CCCC---------chhhhHHhhhhhhcceeeecCCCCCccH
Q 010775 370 QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW----PFTG---------DQPTNGRYVCNEWGVGMEINGDDEDVIR 436 (501)
Q Consensus 370 q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~----P~~~---------DQ~~na~rv~~~~g~G~~l~~~~~~~~~ 436 (501)
..++|..+++ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+ ...++...+.. .++|+
T Consensus 261 ~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil-~~~~~~pel~q--~~~~~ 334 (385)
T TIGR00215 261 ARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL-ANRLLVPELLQ--EECTP 334 (385)
T ss_pred HHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh-cCCccchhhcC--CCCCH
Confidence 3468999999 9999999888 999999999999 7632 277799999 55688888876 88999
Q ss_pred HHHHHHHHHHhcCh----hhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 010775 437 NEVEKLVREMMEGE----KGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 484 (501)
Q Consensus 437 ~~l~~ai~~vl~~~----~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li 484 (501)
+.|.+.+.++++|+ + ++++.++--+.++....++|.+....+.++
T Consensus 335 ~~l~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 335 HPLAIALLLLLENGLKAYK---EMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred HHHHHHHHHHhcCCcccHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 99999999999998 6 444444444444444445666666665544
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=4.8e-13 Score=135.58 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=108.1
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHH---HHhccCCeeecccChH-Hhhc
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFE---VKAKEKGFVASWCPQE-EVLK 375 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~p~~~~---~~~~~n~~~~~~vpq~-~lL~ 375 (501)
++++|++..|+.... ..+..+++++... +.+++++.+.+.. +-+.+. ++.++|+.+.+|+++. ++|.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~------~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA------LKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH------HHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 345777777876432 2244566666543 3456665553210 111221 2234578889999874 6999
Q ss_pred CCCccceEeccCchhHHHhhhcCCceEec-CCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHH
Q 010775 376 HPSIGGFLTHCGWNSIVESLCSGVPMICW-PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQ 454 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~ 454 (501)
.+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+ ++.|+|+.. -+.+++.++|.++++|++
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~------~~~~~l~~~i~~ll~~~~--- 340 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI------RDDEEVFAKTEALLQDDM--- 340 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE------CCHHHHHHHHHHHHCCHH---
Confidence 9999 99999988999999999999985 6777788899888 666887754 357899999999999876
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010775 455 MRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 489 (501)
Q Consensus 455 ~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~ 489 (501)
.+++..+-+..+. ...+.+..++.+++.+..
T Consensus 341 ~~~~m~~~~~~~~----~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 341 KLLQMKEAMKSLY----LPEPADHIVDDILAENHV 371 (380)
T ss_pred HHHHHHHHHHHhC----CCchHHHHHHHHHHhhhh
Confidence 4433332222222 234556666666555543
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.58 E-value=3.9e-13 Score=126.40 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=102.5
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHh-CCCCEEEEEcCCCCCCCCCCCchHHHHH----hc--cCCeeecccChH-H
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVN-SNHPFLWIIRPDLVTGETADLPAEFEVK----AK--EKGFVASWCPQE-E 372 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~p~~~~~~----~~--~n~~~~~~vpq~-~ 372 (501)
.+.-|.||-|--. ...+.+..++.|-.- .+.+-.|.+-.+.. +|..-.++ .+ +++.+..|-.+. .
T Consensus 218 E~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ 290 (400)
T COG4671 218 EGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF------MPEAQRQKLLASAPKRPHISIFEFRNDFES 290 (400)
T ss_pred ccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC------CCHHHHHHHHHhcccCCCeEEEEhhhhHHH
Confidence 3457888777653 355666666666443 33332343322221 66543332 23 578888888764 6
Q ss_pred hhcCCCccceEeccCchhHHHhhhcCCceEecCCC---CchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 373 VLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFT---GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 373 lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
+|.-++. +|+-||+||++|-|++|+|.+++|.. .+|-.-|.|+ +++|+--.+-. ++++++.|+++|...+.-
T Consensus 291 ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl-~~LGL~dvL~p--e~lt~~~La~al~~~l~~ 365 (400)
T COG4671 291 LLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRL-EELGLVDVLLP--ENLTPQNLADALKAALAR 365 (400)
T ss_pred HHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHH-HhcCcceeeCc--ccCChHHHHHHHHhcccC
Confidence 9988888 99999999999999999999999984 4899999999 89999888888 899999999999988873
Q ss_pred h
Q 010775 450 E 450 (501)
Q Consensus 450 ~ 450 (501)
+
T Consensus 366 P 366 (400)
T COG4671 366 P 366 (400)
T ss_pred C
Confidence 3
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.56 E-value=6.7e-13 Score=127.91 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=76.6
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchHHHHH--hccCCeeecccChH-HhhcC
Q 010775 302 KSVIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE-EVLKH 376 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~p~~~~~~--~~~n~~~~~~vpq~-~lL~~ 376 (501)
.+.|+++||.....+ ....+++++... +.++.++++.... ..+.+.+. ...|+.+..++++. ++|..
T Consensus 170 ~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~------~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 170 LRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP------NLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred cCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc------CHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 358999999764322 334556666554 3466777765431 12222221 23578899999986 69999
Q ss_pred CCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHh
Q 010775 377 PSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRY 416 (501)
Q Consensus 377 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 416 (501)
+++ +|++|| +|++|+++.|+|+|++|+..+|..||+.
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 999999 9999999999999999999999999875
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.53 E-value=2e-12 Score=131.12 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=67.5
Q ss_pred hHHhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCc--------hhhh-----HHhhhhhhcceeeecCCCCCccH
Q 010775 370 QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGD--------QPTN-----GRYVCNEWGVGMEINGDDEDVIR 436 (501)
Q Consensus 370 q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D--------Q~~n-----a~rv~~~~g~G~~l~~~~~~~~~ 436 (501)
-..++..+++ +|+.+|.+++ |++++|+|+|..|...- |..| +..+ ...+++..+.. ...++
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~--~~~~~ 328 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQ--EEATP 328 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhhcC--CCCCH
Confidence 3568999999 9999998887 99999999999854321 2111 2222 22233444444 67899
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 437 NEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 437 ~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
+.|.++|.++++|++ .+++..+-.+.+.... ..+.....++.+.+.+
T Consensus 329 ~~l~~~i~~ll~~~~---~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 329 EKLARALLPLLADGA---RRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 999999999999986 4443333332222222 2344455555544433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.44 E-value=1.6e-10 Score=117.43 Aligned_cols=165 Identities=20% Similarity=0.259 Sum_probs=106.8
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHH-HhC-CCCEEEEEcCCCCCCCCCCCchHHHHH--hccCCeeecccChH-Hhhc
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGL-VNS-NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE-EVLK 375 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al-~~~-~~~~i~~~~~~~~~~~~~~~p~~~~~~--~~~n~~~~~~vpq~-~lL~ 375 (501)
++++|+++.|+... ...+..+++++ +.. +.+++++.+.+.. +-+.+.+. ..+++.+.+|+++. ++|.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~------l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE------LKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH------HHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 45688888888752 12344444443 222 3456555553210 11122221 13477888999765 5999
Q ss_pred CCCccceEeccCchhHHHhhhcCCceEec-CCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHH
Q 010775 376 HPSIGGFLTHCGWNSIVESLCSGVPMICW-PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQ 454 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~ 454 (501)
.+++ +|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|+.. . +.+++.++|.++++|++
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~----~--~~~~l~~~i~~ll~~~~--- 340 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA----D--TPEEAIKIVASLTNGNE--- 340 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe----C--CHHHHHHHHHHHhcCHH---
Confidence 9999 99988888999999999999998 7777777899988 777999765 3 68889999999998865
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010775 455 MRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 489 (501)
Q Consensus 455 ~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~ 489 (501)
.+ ++|++.+++. ....+.+..++++++.+.+
T Consensus 341 ~~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 341 QL---TNMISTMEQD-KIKYATQTICRDLLDLIGH 371 (391)
T ss_pred HH---HHHHHHHHHh-cCCCCHHHHHHHHHHHhhh
Confidence 22 2233333321 1234445555555555544
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.44 E-value=6.4e-15 Score=131.17 Aligned_cols=138 Identities=17% Similarity=0.252 Sum_probs=97.0
Q ss_pred eEEEeeccccccC-HHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccC-hHHhhcCCCc
Q 010775 304 VIYVNFGSFIFMN-KQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP-QEEVLKHPSI 379 (501)
Q Consensus 304 ~V~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vp-q~~lL~~~~~ 379 (501)
+|+|+.||..... .+.+..+...+.. ...+++++.|........ ..+ .....|+.+.+|++ ..+++..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~----~~~-~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELK----IKV-ENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHC----CCH-CCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHH----HHH-hccCCcEEEEechhhHHHHHHHcCE
Confidence 5899999885321 1112222333222 246888888765321110 000 01125788999999 6779999999
Q ss_pred cceEeccCchhHHHhhhcCCceEecCCCC----chhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 380 GGFLTHCGWNSIVESLCSGVPMICWPFTG----DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 380 ~~~I~HGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
+|||||.||+.|++++|+|+|++|... +|..||..+ ++.|.|..+.. ...+.+.|.++|.+++.++.
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~--~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDE--SELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSEC--CC-SCCCHHHHHHCHCCCHH
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCc--ccCCHHHHHHHHHHHHcCcH
Confidence 999999999999999999999999988 999999999 77799999987 78889999999999999875
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.35 E-value=9.8e-10 Score=111.36 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=69.7
Q ss_pred cCCeeecccChH-HhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchh-hhHHhhhhhhcceeeecCCCCCccHH
Q 010775 360 EKGFVASWCPQE-EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQP-TNGRYVCNEWGVGMEINGDDEDVIRN 437 (501)
Q Consensus 360 ~n~~~~~~vpq~-~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~~g~G~~l~~~~~~~~~~ 437 (501)
.++.+.+|+++. ++|..+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.. -+++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~------~~~~ 335 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS------ESPK 335 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec------CCHH
Confidence 467788999865 59999999 999999999999999999999998766676 588888 556888653 4789
Q ss_pred HHHHHHHHHhcC-hh
Q 010775 438 EVEKLVREMMEG-EK 451 (501)
Q Consensus 438 ~l~~ai~~vl~~-~~ 451 (501)
+|.++|.+++.| ++
T Consensus 336 ~la~~i~~ll~~~~~ 350 (382)
T PLN02605 336 EIARIVAEWFGDKSD 350 (382)
T ss_pred HHHHHHHHHHcCCHH
Confidence 999999999987 54
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.34 E-value=2.4e-13 Score=117.03 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=82.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCC--CCCCCCCCCCcccH
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDG--LPASSDESPTAQDA 90 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~--~~~~~~~~~~~~~~ 90 (501)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++.. ++.. ......+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~----------Gl~~~~~~~~~~~~~~---~~~~~~~ 67 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA----------GLEFVPIPGDSRLPRS---LEPLANL 67 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT----------T-EEEESSSCGGGGHH---HHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc----------CceEEEecCCcCcCcc---cchhhhh
Confidence 78999999999999999999999999999999999999999775 8999999854 1110 0000111
Q ss_pred HHHHHH--HHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccchhH
Q 010775 91 YSLGEN--IINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTISACS 157 (501)
Q Consensus 91 ~~~~~~--~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~ 157 (501)
...... ....+ ...+.+....... ...+....|+++.+.....+..+|+++|||++.....+...
T Consensus 68 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 68 RRLARLIRGLEEA-MRILARFRPDLVV-AAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HCHHHHHHHHHHH-HHHHHHHHHCCCC-HCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhHHHHhhhhhHH-HHHhhccCcchhh-hccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 111111 01111 1112221111100 00112357888888877789999999999999987776543
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.34 E-value=3.2e-10 Score=114.74 Aligned_cols=134 Identities=17% Similarity=0.115 Sum_probs=88.4
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCCCCCCchHHHHHhc------------------
Q 010775 302 KSVIYVNFGSFIFMNKQQLIEVAMGLVNS----NHPFLWIIRPDLVTGETADLPAEFEVKAK------------------ 359 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~p~~~~~~~~------------------ 359 (501)
+++|.+--||-..-....+..++++++.. +..|++.+.+... .+.+...+.
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~-------~~~~~~~l~~~g~~~~~~~~~~~~~~~ 277 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS-------LEKLQAILEDLGWQLEGSSEDQTSLFQ 277 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-------HHHHHHHHHhcCceecCCccccchhhc
Confidence 45888888887432223344455554443 4577777743221 111211111
Q ss_pred -cCCeeecccC-hHHhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhh----cceeeecCCCCC
Q 010775 360 -EKGFVASWCP-QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEW----GVGMEINGDDED 433 (501)
Q Consensus 360 -~n~~~~~~vp-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~----g~G~~l~~~~~~ 433 (501)
+++.+..+.. ..++|..+++ +|+-+|..| .|+...|+|+|++|.-..|. |+... ++. |.++.+ ..
T Consensus 278 ~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l----~~ 348 (396)
T TIGR03492 278 KGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFL----AS 348 (396)
T ss_pred cCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEec----CC
Confidence 1234444443 4569999999 999999766 99999999999999877776 88766 442 666666 34
Q ss_pred ccHHHHHHHHHHHhcChh
Q 010775 434 VIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~~~~ 451 (501)
.+.+.|.+++.++++|++
T Consensus 349 ~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 349 KNPEQAAQVVRQLLADPE 366 (396)
T ss_pred CCHHHHHHHHHHHHcCHH
Confidence 566999999999999876
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.26 E-value=3.3e-08 Score=98.74 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=96.2
Q ss_pred CceEEEeeccccc-cCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHH---hhcC
Q 010775 302 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEE---VLKH 376 (501)
Q Consensus 302 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~---lL~~ 376 (501)
++.+++..|+... -+.+.+..++..+... +..+++ ++.+.. .+.+. ...+|+.+.+|+++.+ +|..
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i-~G~~~~-------~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ 266 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVI-VGDGPA-------RARLE-ARYPNVHFLGFLDGEELAAAYAS 266 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEE-EeCCch-------HHHHh-ccCCcEEEEeccCHHHHHHHHHh
Confidence 3467777787643 2233333333444332 233333 342211 11111 2356889999999765 7888
Q ss_pred CCccceEeccC----chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhh
Q 010775 377 PSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG 452 (501)
Q Consensus 377 ~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~ 452 (501)
+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ +..+.|... ..-+.+++.++|.+++.|++
T Consensus 267 ~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~----~~~~~~~l~~~i~~l~~~~~- 334 (364)
T cd03814 267 ADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLV----EPGDAEAFAAALAALLADPE- 334 (364)
T ss_pred CCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEc----CCCCHHHHHHHHHHHHcCHH-
Confidence 998 887654 378999999999999887554 44455 556788877 45678889999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 010775 453 KQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNE 486 (501)
Q Consensus 453 ~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~ 486 (501)
.+++..+-+....+ .-+.+...+++++.
T Consensus 335 --~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 335 --LRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred --HHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 33333332222222 24555666666543
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.18 E-value=2.1e-07 Score=97.01 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=85.3
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchHHHHHh-ccCCeeecccChHH---hhcCC
Q 010775 303 SVIYVNFGSFIFMNKQQLIEVAMGLVNSN-HPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEE---VLKHP 377 (501)
Q Consensus 303 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~p~~~~~~~-~~n~~~~~~vpq~~---lL~~~ 377 (501)
..+++..|+... ...+..++++++..+ .+++ .+|.+. ..+.+.... ..++.+.+++++.+ +|..+
T Consensus 263 ~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~-------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 263 KPLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP-------YREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred CeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh-------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 355666687642 233556777777654 3444 344221 112222211 24678899998654 78888
Q ss_pred CccceEeccC----chhHHHhhhcCCceEecCCCCchhhhHHhhhhh---hcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 378 SIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNE---WGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 378 ~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~---~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
++ +|.-.. -.++.||+++|+|+|+....+ ....+ +. -+.|..++ .-+.+++.++|.++++|+
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~----~~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYT----PGDVDDCVEKLETLLADP 401 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeC----CCCHHHHHHHHHHHHhCH
Confidence 88 775332 347899999999999876532 22233 43 46788874 457899999999999887
Q ss_pred h-hHHHHHHHHH
Q 010775 451 K-GKQMRNKAME 461 (501)
Q Consensus 451 ~-~~~~r~~a~~ 461 (501)
+ -+++.+++++
T Consensus 402 ~~~~~~~~~a~~ 413 (465)
T PLN02871 402 ELRERMGAAARE 413 (465)
T ss_pred HHHHHHHHHHHH
Confidence 5 1234444444
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.15 E-value=1.3e-07 Score=93.98 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=80.9
Q ss_pred CceEEEeecccccc-CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHH---hhcCC
Q 010775 302 KSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEE---VLKHP 377 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~---lL~~~ 377 (501)
++.+++..|+.... +.+.+..++..+...+.++++ ++..... ..........+++.+.+++++.+ ++..+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i-~G~~~~~-----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 263 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVI-VGNGLEL-----EEESYELEGDPRVEFLGAYPQEEIDDFYAEI 263 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEE-EcCchhh-----hHHHHhhcCCCeEEEeCCCCHHHHHHHHHhC
Confidence 45777778887532 233333333333322344444 3422210 00000001246788899997654 68888
Q ss_pred CccceEe----ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 378 SIGGFLT----HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 378 ~~~~~I~----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
++ +|+ ..|. .++.||+++|+|+|+.+.. .+...+ +..+.|..++ .-+.+++.++|.++++|++
T Consensus 264 d~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~----~~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 264 DV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELV-RDGVNGLLFP----PGDAEDLAAALERLIDDPD 331 (359)
T ss_pred CE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHh-cCCCcEEEEC----CCCHHHHHHHHHHHHhChH
Confidence 88 773 2344 4899999999999986543 455555 5545788774 4568999999999999775
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.08 E-value=6.7e-07 Score=91.19 Aligned_cols=81 Identities=10% Similarity=0.152 Sum_probs=59.9
Q ss_pred cCCeeecccChHH---hhcCCCccceEe---ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCC
Q 010775 360 EKGFVASWCPQEE---VLKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 432 (501)
Q Consensus 360 ~n~~~~~~vpq~~---lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~ 432 (501)
+++.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+... ......+ +.-..|..+ .
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv----~ 349 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLV----D 349 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEc----C
Confidence 5788899999765 6778888 653 2333 489999999999998643 3445555 443467766 3
Q ss_pred CccHHHHHHHHHHHhcChh
Q 010775 433 DVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 433 ~~~~~~l~~ai~~vl~~~~ 451 (501)
.-++++++++|.++++|++
T Consensus 350 ~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 350 FFDPDALAAAVIELLDDPA 368 (396)
T ss_pred CCCHHHHHHHHHHHHhCHH
Confidence 4679999999999999875
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.06 E-value=2.3e-07 Score=93.17 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=81.1
Q ss_pred CceEEEeeccccc-cCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHH----HhccCCeeecccChHH---
Q 010775 302 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEV----KAKEKGFVASWCPQEE--- 372 (501)
Q Consensus 302 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~p~~~~~----~~~~n~~~~~~vpq~~--- 372 (501)
++.+++..|+... -+.+.+...+..+... +..++ .++.+. ..+.+.+ ...+|+.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~-------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGP-------EKEELKELAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCcc-------cHHHHHHHHHHcCCCcEEEeCCCChHHHHH
Confidence 4577777888753 2333333333444333 33333 334222 1112221 2246888889998654
Q ss_pred hhcCCCccceEeccC---------chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHH
Q 010775 373 VLKHPSIGGFLTHCG---------WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLV 443 (501)
Q Consensus 373 lL~~~~~~~~I~HGG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai 443 (501)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+... ...+.|..++ .-+.+++.++|
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~-----~~~~~g~~~~----~~~~~~l~~~i 359 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV-----EEAGAGLVVP----PGDPEALAAAI 359 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh-----ccCCcceEeC----CCCHHHHHHHH
Confidence 7788888 664322 23479999999999998887654432 2226777774 34889999999
Q ss_pred HHHhcChh
Q 010775 444 REMMEGEK 451 (501)
Q Consensus 444 ~~vl~~~~ 451 (501)
.+++.|++
T Consensus 360 ~~~~~~~~ 367 (394)
T cd03794 360 LELLDDPE 367 (394)
T ss_pred HHHHhChH
Confidence 99998775
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.04 E-value=7.3e-07 Score=90.60 Aligned_cols=82 Identities=11% Similarity=0.199 Sum_probs=62.6
Q ss_pred ccCCeeecccChHH---hhcCCCccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 431 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~ 431 (501)
.+|+.+.+|+|+.+ ++..+++ +|+. |--.++.||+++|+|+|+....+ ....+ +..+.|...+
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~--- 351 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVD--- 351 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeC---
Confidence 35788899999865 5888888 7744 22358999999999999876543 44445 5656888874
Q ss_pred CCccHHHHHHHHHHHhcChh
Q 010775 432 EDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 432 ~~~~~~~l~~ai~~vl~~~~ 451 (501)
.-+.+++.++|.+++++++
T Consensus 352 -~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 352 -PRDPEALAAALRRLLTDPA 370 (398)
T ss_pred -CCCHHHHHHHHHHHHhCHH
Confidence 4579999999999998865
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.04 E-value=1.1e-06 Score=87.11 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=74.4
Q ss_pred hccCCeeecccChHH---hhcCCCccceEe----ccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCC
Q 010775 358 AKEKGFVASWCPQEE---VLKHPSIGGFLT----HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 430 (501)
Q Consensus 358 ~~~n~~~~~~vpq~~---lL~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~ 430 (501)
..+++.+.+++++.+ +|..+++ +|. -|.-+++.||+++|+|+|+.+. ......+ +..+.|...+
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~-- 324 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVP-- 324 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeC--
Confidence 356888899997543 7888888 773 2456799999999999998766 3445555 5446787774
Q ss_pred CCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010775 431 DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 485 (501)
Q Consensus 431 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~ 485 (501)
..+.+++.++|.+++++++ .+++..++..+.+.+ .-+.+...+++++
T Consensus 325 --~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 371 (374)
T cd03801 325 --PGDPEALAEAILRLLDDPE--LRRRLGEAARERVAE----RFSWDRVAARTEE 371 (374)
T ss_pred --CCCHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 4569999999999999876 133333333323332 2444555555544
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.03 E-value=1.2e-06 Score=86.81 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=81.3
Q ss_pred CCceEEEeecccccc-CHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHH-HHH--hccCCeeecccCh-HHhh
Q 010775 301 PKSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEF-EVK--AKEKGFVASWCPQ-EEVL 374 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~p~~~-~~~--~~~n~~~~~~vpq-~~lL 374 (501)
+++.+++..|+.... +.+.+-..+..+.+.+..+ ++.++...... ..... ..+ ...++.+.++..+ ..++
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEEN----PAAILEIEKLGLEGRVEFLGFRDDVPELL 261 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcch----hhHHHHHHhcCCcceEEEeeccccHHHHH
Confidence 345788888887532 3344444444444323333 23333322111 00000 111 2356777777554 4588
Q ss_pred cCCCccceEeccC----chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 375 KHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 375 ~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
..+++ +|.-.. -+++.||+++|+|+|+-+..+ ....+ +..+.|... ..-+.+++.++|.+++.|+
T Consensus 262 ~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i-~~~~~g~~~----~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 262 AAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAV-IDGVNGFLV----PPGDAEALADAIERLIEDP 330 (359)
T ss_pred HhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhh-hcCcceEEE----CCCCHHHHHHHHHHHHhCH
Confidence 88998 775432 478999999999999865443 34445 444678777 4457899999999999887
Q ss_pred h
Q 010775 451 K 451 (501)
Q Consensus 451 ~ 451 (501)
+
T Consensus 331 ~ 331 (359)
T cd03808 331 E 331 (359)
T ss_pred H
Confidence 5
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.03 E-value=9.5e-07 Score=88.22 Aligned_cols=81 Identities=15% Similarity=0.303 Sum_probs=60.2
Q ss_pred ccCCeeecccChHH---hhcCCCccceEecc----CchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 431 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~ 431 (501)
.+++.+.+++|+.+ ++..+++ +|.-. ...++.||+++|+|+|+... ...+..+ +..+.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~-- 328 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP-- 328 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC--
Confidence 46788899999765 6888888 77433 34689999999999998654 3345555 55567887754
Q ss_pred CCccHHHHHHHHHHHhcChh
Q 010775 432 EDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 432 ~~~~~~~l~~ai~~vl~~~~ 451 (501)
.. . ++.++|.+++++++
T Consensus 329 ~~--~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 329 GD--E-ALAEALLRLLQDPE 345 (374)
T ss_pred CC--H-HHHHHHHHHHhChH
Confidence 22 2 89999999998875
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.98 E-value=9.7e-07 Score=88.86 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=71.2
Q ss_pred ccCCeeecccCh-HHhhcCCCccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 359 KEKGFVASWCPQ-EEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 359 ~~n~~~~~~vpq-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
.+++.+.++.++ ..+|..+++ +|.- |.-.++.||+++|+|+|+... ...+..+ +.-..|...+ .
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~----~ 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVD----V 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcC----C
Confidence 356777888775 458888888 6632 334599999999999998544 3445555 4435676663 4
Q ss_pred ccHHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 434 VIRNEVEKLVREMMEGEKG-KQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~~~~~-~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
-+.+++.++|.++++++.- +++++++++.. .+ .-+.+..++++.+.+
T Consensus 321 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~---~~----~fs~~~~~~~~~~~y 368 (371)
T cd04962 321 GDVEAMAEYALSLLEDDELWQEFSRAARNRA---AE----RFDSERIVPQYEALY 368 (371)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HH----hCCHHHHHHHHHHHH
Confidence 5789999999999987651 23444444431 21 234455555555544
No 55
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.97 E-value=5.4e-07 Score=90.82 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=70.5
Q ss_pred cCCeeecccChH---HhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccH
Q 010775 360 EKGFVASWCPQE---EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 436 (501)
Q Consensus 360 ~n~~~~~~vpq~---~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~ 436 (501)
+++.+.+.+++. .++.++++ +|+-.|. .+.||.++|+|+|.++..++++. .+ + .|.+..+. -++
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e---~~-~-~g~~~lv~-----~d~ 321 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE---TV-E-AGTNKLVG-----TDK 321 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH---HH-h-cCceEEeC-----CCH
Confidence 577777766654 56778888 9987764 47999999999999876665553 22 3 36665542 478
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 010775 437 NEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 484 (501)
Q Consensus 437 ~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li 484 (501)
++|.+++.++++|++ .+++..+-. +.+.+|+++.++++.+.
T Consensus 322 ~~i~~ai~~ll~~~~---~~~~~~~~~----~~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 322 ENITKAAKRLLTDPD---EYKKMSNAS----NPYGDGEASERIVEELL 362 (365)
T ss_pred HHHHHHHHHHHhChH---HHHHhhhcC----CCCcCchHHHHHHHHHH
Confidence 999999999998876 555543322 22334556555555443
No 56
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=1.5e-07 Score=86.66 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=101.7
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh--ccCCeeecccC-hHHhhcCCC
Q 010775 302 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASWCP-QEEVLKHPS 378 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~--~~n~~~~~~vp-q~~lL~~~~ 378 (501)
..-|+|++|-.- +....-+++..+...+..+-.+++... . -.+....+. .+|+.+..... -..++..++
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~--p----~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN--P----TLKNLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC--c----chhHHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 457999998763 233445567777776655555555211 1 222333322 34555544444 345999999
Q ss_pred ccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHH
Q 010775 379 IGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNK 458 (501)
Q Consensus 379 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~ 458 (501)
+ .|+-||. |+.|++.-|+|.+++|+...|---|... +.+|+-..+.. .++.+.+...+.++..|.. .|++
T Consensus 230 ~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~---~l~~~~~~~~~~~i~~d~~---~rk~ 299 (318)
T COG3980 230 L--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY---HLKDLAKDYEILQIQKDYA---RRKN 299 (318)
T ss_pred h--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC---CCchHHHHHHHHHhhhCHH---Hhhh
Confidence 9 9999995 9999999999999999999999999999 77788777754 4778888888888888876 5655
Q ss_pred HHHHHHHH
Q 010775 459 AMEWKGLA 466 (501)
Q Consensus 459 a~~~~~~~ 466 (501)
.-.-++.+
T Consensus 300 l~~~~~~i 307 (318)
T COG3980 300 LSFGSKLI 307 (318)
T ss_pred hhhcccee
Confidence 54444433
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.92 E-value=5.6e-06 Score=84.90 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=61.3
Q ss_pred CCee-ecccChHH---hhcCCCccceEe-c----c-C-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecC
Q 010775 361 KGFV-ASWCPQEE---VLKHPSIGGFLT-H----C-G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 429 (501)
Q Consensus 361 n~~~-~~~vpq~~---lL~~~~~~~~I~-H----G-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~ 429 (501)
|+.+ .+|+|..+ +|..+++ +|. + | | -.++.||+++|+|+|+... ......+ +.-+.|..+
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv-- 365 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF-- 365 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--
Confidence 5554 46888655 6888998 663 1 1 2 3479999999999998554 2344445 665678776
Q ss_pred CCCCccHHHHHHHHHHHhcC---hh-hHHHHHHHHHHH
Q 010775 430 DDEDVIRNEVEKLVREMMEG---EK-GKQMRNKAMEWK 463 (501)
Q Consensus 430 ~~~~~~~~~l~~ai~~vl~~---~~-~~~~r~~a~~~~ 463 (501)
. +.++|+++|.++++| ++ .++|++++++.+
T Consensus 366 --~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 --G--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred --C--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 3 689999999999998 43 334555555544
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.92 E-value=4.8e-06 Score=82.84 Aligned_cols=133 Identities=13% Similarity=0.158 Sum_probs=82.7
Q ss_pred CceEEEeecccccc-CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHH-----hccCCeeecccChH---H
Q 010775 302 KSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK-----AKEKGFVASWCPQE---E 372 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~-----~~~n~~~~~~vpq~---~ 372 (501)
+..+++..|+.... +.+.+-..+..+...+..+.+.+.+... ....+.+. ..+|+.+.+++++. .
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 274 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP------LREALEALAAELGLEDRVTFLGAVPHEEVPA 274 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc------chHHHHHHHHhcCCcceEEEeCCCCHHHHHH
Confidence 45777788887532 2233333333333333344444433221 11112211 24678889999975 4
Q ss_pred hhcCCCccceEe----ccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 373 VLKHPSIGGFLT----HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 373 lL~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
++..+++ +|. -|.-+++.||+++|+|+|+-+..+ ....+ +..+.|... ..-+.+++.++|.++++
T Consensus 275 ~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~-~~~~~g~~~----~~~~~~~l~~~i~~~~~ 343 (377)
T cd03798 275 YYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEII-TDGENGLLV----PPGDPEALAEAILRLLA 343 (377)
T ss_pred HHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHh-cCCcceeEE----CCCCHHHHHHHHHHHhc
Confidence 6778888 662 245578999999999999866543 34445 555667777 45789999999999999
Q ss_pred Chh
Q 010775 449 GEK 451 (501)
Q Consensus 449 ~~~ 451 (501)
++.
T Consensus 344 ~~~ 346 (377)
T cd03798 344 DPW 346 (377)
T ss_pred CcH
Confidence 875
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.89 E-value=1.8e-05 Score=81.05 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=73.4
Q ss_pred cCCeeecccChHH---hhcCCCccceEeccCc------hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCC
Q 010775 360 EKGFVASWCPQEE---VLKHPSIGGFLTHCGW------NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 430 (501)
Q Consensus 360 ~n~~~~~~vpq~~---lL~~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~ 430 (501)
+|+.+.+|+|+.+ ++..+++..+.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~-- 356 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVE-- 356 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeC--
Confidence 4788899998754 7888898544444332 246899999999999875431 122233 4 6788774
Q ss_pred CCCccHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010775 431 DEDVIRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 489 (501)
Q Consensus 431 ~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~ 489 (501)
.-+.++++++|.++++|++ .+.+++++++..+. .-+.+..++++++.+.+
T Consensus 357 --~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 357 --PESVEALVAAIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIRG 407 (412)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHH
Confidence 4678999999999998764 22455555544322 23345555555555544
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.88 E-value=5.9e-06 Score=82.74 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=71.8
Q ss_pred hccCCeeecccC-hH---HhhcCCCccceEecc----CchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecC
Q 010775 358 AKEKGFVASWCP-QE---EVLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 429 (501)
Q Consensus 358 ~~~n~~~~~~vp-q~---~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~ 429 (501)
...++.+.+|++ +. .++..+++ +|.-. .-+++.||+++|+|+|+.... .....+ +..+.|..+
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~-- 312 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLA-- 312 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEe--
Confidence 345777889998 43 46888888 77743 347999999999999986543 222333 333467666
Q ss_pred CCCCccHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 430 DDEDVIRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 430 ~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
...+.+++.+++.+++++++ -+++.+++++. +. +.-+.+...+++++-+
T Consensus 313 --~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~----~~~s~~~~~~~~~~~y 362 (365)
T cd03825 313 --KPGDPEDLAEGIEWLLADPDEREELGEAAREL---AE----NEFDSRVQAKRYLSLY 362 (365)
T ss_pred --CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HH----HhcCHHHHHHHHHHHH
Confidence 45688999999999998775 11233333322 22 2344555666665544
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.85 E-value=9.8e-07 Score=88.76 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=84.0
Q ss_pred CCceEEEeecccccc-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHH---HHh---ccCCeeecccChH-
Q 010775 301 PKSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFE---VKA---KEKGFVASWCPQE- 371 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~p~~~~---~~~---~~n~~~~~~vpq~- 371 (501)
+++.|++++|..... ....+..++++++.... ++.+...++.. .-..+. .+. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~------~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR------TRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC------hHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 345788888876543 34557777787766543 24444433221 111222 122 3567776665543
Q ss_pred --HhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 372 --EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 372 --~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
.++..+++ +|+-.| |.+.|++++|+|+|+++.. |. +..+ .+.|++..+ . -+.++|.++|.+++++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~----~-~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLV----G-TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEec----C-CCHHHHHHHHHHHhcC
Confidence 46778998 999999 7888999999999998743 22 2233 233666554 2 2589999999999998
Q ss_pred hh
Q 010775 450 EK 451 (501)
Q Consensus 450 ~~ 451 (501)
+.
T Consensus 338 ~~ 339 (363)
T cd03786 338 EF 339 (363)
T ss_pred ch
Confidence 75
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.83 E-value=7.2e-06 Score=81.81 Aligned_cols=133 Identities=14% Similarity=0.121 Sum_probs=83.7
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHH-----HhccCCeeecccChHH---h
Q 010775 302 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQEE---V 373 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~-----~~~~n~~~~~~vpq~~---l 373 (501)
+..+++..|.... ..-...++++++... ++-+.+.++.. ....+.+ ...+|+.+.+|+|+.+ +
T Consensus 190 ~~~~i~~~G~~~~--~K~~~~li~a~~~l~-~~~l~i~G~g~------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 190 GRPFFLFVGRLVY--YKGLDVLLEAAAALP-DAPLVIVGEGP------LEAELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CCcEEEEeccccc--ccCHHHHHHHHHhcc-CcEEEEEeCCh------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 3467778888752 233455667776665 33333322211 1112221 1246899999999754 7
Q ss_pred hcCCCccceEe---ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 374 LKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 374 L~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
+..+++..+.+ +.|. .++.||+++|+|+|+....+....... .-+.|... ..-+.+++.++|.++++|
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~----~~~~g~~~----~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL----HGVTGLVV----PPGDPAALAEAIRRLLED 332 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh----CCCceEEe----CCCCHHHHHHHHHHHHHC
Confidence 77788832223 2344 379999999999999766555443322 13677776 446899999999999998
Q ss_pred hh
Q 010775 450 EK 451 (501)
Q Consensus 450 ~~ 451 (501)
++
T Consensus 333 ~~ 334 (357)
T cd03795 333 PE 334 (357)
T ss_pred HH
Confidence 76
No 63
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.82 E-value=9.9e-06 Score=83.42 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=55.4
Q ss_pred HHhhcCCCccceEec-----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHH
Q 010775 371 EEVLKHPSIGGFLTH-----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 445 (501)
Q Consensus 371 ~~lL~~~~~~~~I~H-----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~ 445 (501)
..++..+++ ++.. ||-.++.||+++|+|+|+-|..+++......+ .+.|.++.. -++++|.++|.+
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~------~d~~~La~~l~~ 384 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV------EDAEDLAKAVTY 384 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE------CCHHHHHHHHHH
Confidence 357888887 5542 33346999999999999999988888887776 444655543 357999999999
Q ss_pred HhcChh
Q 010775 446 MMEGEK 451 (501)
Q Consensus 446 vl~~~~ 451 (501)
+++|++
T Consensus 385 ll~~~~ 390 (425)
T PRK05749 385 LLTDPD 390 (425)
T ss_pred HhcCHH
Confidence 999875
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.78 E-value=1.7e-05 Score=81.12 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=64.7
Q ss_pred ccCCeeecccChH---HhhcCCCccceEe---ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC
Q 010775 359 KEKGFVASWCPQE---EVLKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 431 (501)
Q Consensus 359 ~~n~~~~~~vpq~---~lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~ 431 (501)
.+++.+.++++.. ++|..+++ +|. +.|. .++.||+++|+|+|+....+ ....+ +..+.|..++
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i-~~~~~g~~~~--- 351 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAV-ADGETGLLVD--- 351 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhh-ccCCceEECC---
Confidence 3578889999865 47888998 663 2343 58999999999999866533 33444 5545677763
Q ss_pred CCccHHHHHHHHHHHhcChh-hHHHHHHHHH
Q 010775 432 EDVIRNEVEKLVREMMEGEK-GKQMRNKAME 461 (501)
Q Consensus 432 ~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 461 (501)
.-+.++++++|.++++++. .+++++++++
T Consensus 352 -~~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 352 -GHDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred -CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4578999999999998865 1234444444
No 65
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.78 E-value=2e-05 Score=86.91 Aligned_cols=411 Identities=11% Similarity=0.087 Sum_probs=199.9
Q ss_pred CCCcEEEEEcCC---------------CccCHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHhhhhCCC----------
Q 010775 8 CSKVHAVCIPSP---------------FQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRLLKARGQH---------- 60 (501)
Q Consensus 8 ~~~~~il~~~~~---------------~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~---------- 60 (501)
.+++.|++++.- +.|+..-.+.||++|+++| |+|.++|-......+......+
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 567888887531 2357778899999999998 8999998533211111000000
Q ss_pred ----CCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcchHHHHH----HHHhhcCCCCCCCCeeEEEEcCC
Q 010775 61 ----SLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPFLDL----LAKLNDSSNSVNPAVSCIISDGF 132 (501)
Q Consensus 61 ----~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----l~~l~~~~~~~~~~~DlVi~D~~ 132 (501)
.....++.+++.+|-+-... ......+..++..+.+.+ ...+.++ .+++.. .....||+|-+.+.
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~---~l~Ke~L~~~l~ef~d~~-l~~~~~~~~~~~~~~~~---~~~~~pDvIHaHyw 319 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDK---YIPKEELWPYIPEFVDGA-LSHIVNMSKVLGEQIGS---GHPVWPYVIHGHYA 319 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCC---CcCHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhcc---ccCCCCCEEEECcc
Confidence 01123477878877543321 122334555666665555 3333322 222210 00124899998754
Q ss_pred cc--hHHHHHHHcCCCeEEEeccchhHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCccccc
Q 010775 133 LP--FTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQS 210 (501)
Q Consensus 133 ~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (501)
.. .+..+++.+|||+|.+.++....-.. . .. ..+... ...+...+
T Consensus 320 ~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~--~---ll------------------------~~g~~~--~~~~~~~y-- 366 (1050)
T TIGR02468 320 DAGDSAALLSGALNVPMVLTGHSLGRDKLE--Q---LL------------------------KQGRMS--KEEINSTY-- 366 (1050)
T ss_pred hHHHHHHHHHHhhCCCEEEECccchhhhhh--h---hc------------------------cccccc--cccccccc--
Confidence 43 57888999999999986652100000 0 00 000000 00000000
Q ss_pred CCCcchHHHHHHHHHhhcccCcEEEEcChhHhhHHHHHHH--hh------------h-------CCCceEEeCccccccc
Q 010775 211 TDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNAL--SF------------M-------FPHHLFTIGPLQLLLN 269 (501)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~l~~~--~~------------~-------~p~~v~~vG~l~~~~~ 269 (501)
. +...+.-....+..++.++..|..+.+..+--+- .+ . .+ ++..|-|=. +..
T Consensus 367 -~----~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~-ri~VIPpGV-D~~ 439 (1050)
T TIGR02468 367 -K----IMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMP-RMAVIPPGM-EFS 439 (1050)
T ss_pred -c----hHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCC-CeEEeCCCC-cHH
Confidence 0 0011111222356788888888887765332110 00 0 11 233333211 000
Q ss_pred cchh----cccccccc-----C-CCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHHHHHHhCC-----CCE
Q 010775 270 QTEE----QDGMLNSI-----G-YNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSN-----HPF 334 (501)
Q Consensus 270 ~~~~----~~~~~~~l-----~-~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~ 334 (501)
...+ .+.. .+ + ......+..+..|+.. ++.++++..|..... .-+..+++|+.... ..+
T Consensus 440 ~F~P~~~~~~~~--~~~~~~~~~~~~~~~~~~l~r~~~~--pdkpvIL~VGRL~p~--KGi~~LIeAf~~L~~l~~~~nL 513 (1050)
T TIGR02468 440 HIVPHDGDMDGE--TEGNEEHPAKPDPPIWSEIMRFFTN--PRKPMILALARPDPK--KNITTLVKAFGECRPLRELANL 513 (1050)
T ss_pred HccCCCccccch--hcccccccccccchhhHHHHhhccc--CCCcEEEEEcCCccc--cCHHHHHHHHHHhHhhccCCCE
Confidence 0000 0000 00 0 0000112245566643 234566667776532 22344555554331 244
Q ss_pred EEEEcCCCCCCCCC-C---CchHH---HHH--hccCCeeecccChHH---hhcCC----CccceEec---cCc-hhHHHh
Q 010775 335 LWIIRPDLVTGETA-D---LPAEF---EVK--AKEKGFVASWCPQEE---VLKHP----SIGGFLTH---CGW-NSIVES 394 (501)
Q Consensus 335 i~~~~~~~~~~~~~-~---~p~~~---~~~--~~~n~~~~~~vpq~~---lL~~~----~~~~~I~H---GG~-gs~~ea 394 (501)
.++++......... . .-..+ .++ +.++|.+.+++++.+ ++..+ ++ ||.- =|. .++.||
T Consensus 514 ~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEA 591 (1050)
T TIGR02468 514 TLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEA 591 (1050)
T ss_pred EEEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHH
Confidence 44555322110000 0 00011 111 235677788888765 55544 35 7663 343 489999
Q ss_pred hhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHhCCC
Q 010775 395 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPH 473 (501)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~~~~~~~g 473 (501)
+++|+|+|+-...+ ....+ +.-.-|+.++ .-++++|+++|.++++|++ -++|.+++++....
T Consensus 592 MAcGlPVVASdvGG----~~EII-~~g~nGlLVd----P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~-------- 654 (1050)
T TIGR02468 592 AAHGLPMVATKNGG----PVDIH-RVLDNGLLVD----PHDQQAIADALLKLVADKQLWAECRQNGLKNIHL-------- 654 (1050)
T ss_pred HHhCCCEEEeCCCC----cHHHh-ccCCcEEEEC----CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--------
Confidence 99999999987543 22233 3334577774 4688999999999999876 12344444443322
Q ss_pred CChHHHHHHHHHHHHhc
Q 010775 474 GSSSLNLDKLVNEILLS 490 (501)
Q Consensus 474 g~~~~~~~~li~~~~~~ 490 (501)
-+-...+++.++.+...
T Consensus 655 FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 655 FSWPEHCKTYLSRIASC 671 (1050)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 33345555555555444
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.77 E-value=1.6e-05 Score=77.86 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=77.4
Q ss_pred CCceEEEeecccc----ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCee-ecccChHHhhc
Q 010775 301 PKSVIYVNFGSFI----FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFV-ASWCPQEEVLK 375 (501)
Q Consensus 301 ~~~~V~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~-~~~vpq~~lL~ 375 (501)
+++.|++-+-+.. .-....+..+++.+++.+..++...+...+ ++.+ ++. ++.+ ..-++-.+||.
T Consensus 178 ~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~-------~~~~-~~~--~~~i~~~~vd~~~Ll~ 247 (335)
T PF04007_consen 178 DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ-------RELF-EKY--GVIIPPEPVDGLDLLY 247 (335)
T ss_pred CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch-------hhHH-hcc--CccccCCCCCHHHHHH
Confidence 4568888777643 123355777899999888775554443221 1111 111 2333 45566668999
Q ss_pred CCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHh
Q 010775 376 HPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 447 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl 447 (501)
++++ +|+=|| -...||..-|+|.|.+ +.++-...-+.+ .+.|+ .. ..-+.+++.+.|.+.+
T Consensus 248 ~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L-~~~Gl--l~----~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 248 YADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYL-IEKGL--LY----HSTDPDEIVEYVRKNL 308 (335)
T ss_pred hcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHH-HHCCC--eE----ecCCHHHHHHHHHHhh
Confidence 9999 998887 6778999999999985 223322333445 33354 33 4567777777665544
No 67
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.76 E-value=4.7e-05 Score=74.89 Aligned_cols=82 Identities=16% Similarity=0.277 Sum_probs=58.4
Q ss_pred cCCeeecccCh-HHhhcCCCccceEeccC----chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCc
Q 010775 360 EKGFVASWCPQ-EEVLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 434 (501)
Q Consensus 360 ~n~~~~~~vpq-~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~ 434 (501)
.++.+.++... ..++..+++ +|.-.. -+++.||+++|+|+|+.+..+.+.. +.+....|... ..-
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~~~~g~~~----~~~ 304 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIEDGVNGLLV----PNG 304 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhccCcceEEe----CCC
Confidence 45666666443 458888888 775542 4689999999999998765544332 22332378777 446
Q ss_pred cHHHHHHHHHHHhcChh
Q 010775 435 IRNEVEKLVREMMEGEK 451 (501)
Q Consensus 435 ~~~~l~~ai~~vl~~~~ 451 (501)
+.+++.++|.++++|++
T Consensus 305 ~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 305 DVEALAEALLRLMEDEE 321 (348)
T ss_pred CHHHHHHHHHHHHcCHH
Confidence 78999999999999886
No 68
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.75 E-value=1.7e-05 Score=80.90 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=55.6
Q ss_pred ccCCeeecccChHH---hhcCCCccceEe---ccCch-hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 431 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~ 431 (501)
.+++.+.+|+|+.+ +|..+++ +|. +-|.| ++.||+++|+|+|+-+..+ ....+ +. |.+ .+.
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~-~~~--- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMI-LLA--- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cce-eec---
Confidence 45688899998654 7788888 664 33444 9999999999999977653 22333 33 433 332
Q ss_pred CCccHHHHHHHHHHHhcCh
Q 010775 432 EDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 432 ~~~~~~~l~~ai~~vl~~~ 450 (501)
. .+.+++.+++.+++.+.
T Consensus 317 ~-~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 317 E-PDVESIVRKLEEAISIL 334 (398)
T ss_pred C-CCHHHHHHHHHHHHhCh
Confidence 2 37899999999999864
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.74 E-value=2.8e-05 Score=77.48 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=58.6
Q ss_pred ccCCeeecccChHH---hhcCCCccceEecc---C-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 431 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~ 431 (501)
.+++.+.+|+++.+ ++..+++ +|.-. | -.++.||+++|+|+|+.+.. .....+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~-~~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELI-EY-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHh-hc-CceEEeCC--
Confidence 46788899999654 6788888 65432 2 46899999999999996543 344445 44 77776642
Q ss_pred CCccHHHHHHHHHHHhcChh
Q 010775 432 EDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 432 ~~~~~~~l~~ai~~vl~~~~ 451 (501)
+.+++.++|.+++++++
T Consensus 331 ---~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 331 ---DVDALAAALRRALELPQ 347 (375)
T ss_pred ---ChHHHHHHHHHHHhCHH
Confidence 34999999999999864
No 70
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.73 E-value=3.9e-05 Score=77.93 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=62.3
Q ss_pred ccCCeeecccChH---HhhcCCCccceEec---cC-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC
Q 010775 359 KEKGFVASWCPQE---EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 431 (501)
Q Consensus 359 ~~n~~~~~~vpq~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~ 431 (501)
.+++.+.+++|+. .+|..+++ ++.. -| -.++.||+++|+|+|+.-..+ ....+ ...+.|...
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i-~~~~~g~~~---- 347 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETV-VDGETGFLC---- 347 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHh-ccCCceEEe----
Confidence 4678899999976 46888888 6642 22 257899999999999975433 33334 443567665
Q ss_pred CCccHHHHHHHHHHHhcChh-hHHHHHHHHH
Q 010775 432 EDVIRNEVEKLVREMMEGEK-GKQMRNKAME 461 (501)
Q Consensus 432 ~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 461 (501)
.. +.+++.++|.+++++++ .+++.+++++
T Consensus 348 ~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 348 EP-TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CC-CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 33 78999999999999875 1234444433
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.73 E-value=5.7e-05 Score=75.35 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=83.3
Q ss_pred CceEEEeecccccc-CHHHHHHHHHHHHhCCCCEE-EEEcCCCCCCCCCCCchHHH---H--HhccCCeeecccCh-HHh
Q 010775 302 KSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNHPFL-WIIRPDLVTGETADLPAEFE---V--KAKEKGFVASWCPQ-EEV 373 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i-~~~~~~~~~~~~~~~p~~~~---~--~~~~n~~~~~~vpq-~~l 373 (501)
+..+++..|..... +.+.+-..+..+...+..+. +.+|.+..... ...... . ...+++.+.+|.+. ..+
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRF---YYAELLELIKRLGLQDRVTFVGHCSDMPAA 260 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccch---HHHHHHHHHHHcCCcceEEEcCCcccHHHH
Confidence 45677777887532 34444445555554333333 33333221100 111111 1 22457888888553 458
Q ss_pred hcCCCccceEec----cCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 374 LKHPSIGGFLTH----CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 374 L~~~~~~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
|..+++ +|+= -|. +++.||+++|+|+|+.-..+ ....+ ..-+.|..+ ..-+.+++.++|..++.
T Consensus 261 l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i-~~~~~g~~~----~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 261 YALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETV-RPGETGLLV----PPGDAEALAQALDQILS 329 (355)
T ss_pred HHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHH-hCCCceEEe----CCCCHHHHHHHHHHHHh
Confidence 888998 5532 233 59999999999999865432 33444 443478777 44689999999976654
Q ss_pred -Chh-hHHHHHHHHHHH
Q 010775 449 -GEK-GKQMRNKAMEWK 463 (501)
Q Consensus 449 -~~~-~~~~r~~a~~~~ 463 (501)
+++ -++++++|++..
T Consensus 330 ~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 330 LLPEGRAKMFAKARMCV 346 (355)
T ss_pred hCHHHHHHHHHHHHHHH
Confidence 443 223444444443
No 72
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.72 E-value=8.1e-05 Score=74.14 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=60.9
Q ss_pred ccCCeeecccChHH---hhcCCCccceEe----------ccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhccee
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLT----------HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGM 425 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~----------HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~ 425 (501)
++|+.+.+++|+.+ ++..+++ +|. =|.-+++.||+++|+|+|+.+..+ ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 46888999998654 7778888 665 233468999999999999866532 22344 5534787
Q ss_pred eecCCCCCccHHHHHHHHHHHhcChh
Q 010775 426 EINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 426 ~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
..+ .-+.+++.++|.++++++.
T Consensus 308 ~~~----~~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 308 LVP----PGDPEALADAIERLLDDPE 329 (355)
T ss_pred EeC----CCCHHHHHHHHHHHHhCHH
Confidence 773 4589999999999998875
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.68 E-value=5.9e-05 Score=75.22 Aligned_cols=81 Identities=14% Similarity=0.262 Sum_probs=58.3
Q ss_pred ccCCeeec-ccChH---HhhcCCCccceEe--c----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeec
Q 010775 359 KEKGFVAS-WCPQE---EVLKHPSIGGFLT--H----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 428 (501)
Q Consensus 359 ~~n~~~~~-~vpq~---~lL~~~~~~~~I~--H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~ 428 (501)
.+++.+.+ |+|+. .++..+++ +|. + |..+++.||+++|+|+|+.+..+ ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 45777764 58865 47888888 663 1 33468999999999999987654 2223 3346777774
Q ss_pred CCCCCccHHHHHHHHHHHhcChh
Q 010775 429 GDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 429 ~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
.-+.+++.+++.++++|++
T Consensus 318 ----~~d~~~~~~~l~~l~~~~~ 336 (366)
T cd03822 318 ----PGDPAALAEAIRRLLADPE 336 (366)
T ss_pred ----CCCHHHHHHHHHHHHcChH
Confidence 4568999999999999864
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.67 E-value=3.5e-05 Score=79.66 Aligned_cols=82 Identities=10% Similarity=0.183 Sum_probs=58.5
Q ss_pred ccCCeeecccChHH---hhcCC----CccceEecc---C-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeee
Q 010775 359 KEKGFVASWCPQEE---VLKHP----SIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEI 427 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~----~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l 427 (501)
.+++.+.+++++.+ ++..+ ++ ||.-. | -.++.||+++|+|+|+....+ ....+ +.-..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHh-cCCCcEEEe
Confidence 45677778888765 46544 56 77643 3 359999999999999876533 34444 443467777
Q ss_pred cCCCCCccHHHHHHHHHHHhcChh
Q 010775 428 NGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 428 ~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
+ .-++++++++|.++++|++
T Consensus 389 ~----~~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 389 D----VLDLEAIASALEDALSDSS 408 (439)
T ss_pred C----CCCHHHHHHHHHHHHhCHH
Confidence 4 4678999999999999875
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.65 E-value=3.4e-05 Score=77.50 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=62.3
Q ss_pred ccCCeeecccChHH---hhcCCCccceEec----------cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhccee
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLTH----------CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGM 425 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~H----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~ 425 (501)
.+++.+.+++|+.+ ++..+++ +|.- |--+++.||+++|+|+|+-+..+ +...+ ...+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhe-ecCCeeE
Confidence 56788899998754 6888888 6642 22468999999999999876643 45555 4557787
Q ss_pred eecCCCCCccHHHHHHHHHHHhcChh
Q 010775 426 EINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 426 ~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
.+ ..-+.+++.++|.++++|++
T Consensus 317 ~~----~~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 317 LV----PEGDVAALAAALGRLLADPD 338 (367)
T ss_pred EE----CCCCHHHHHHHHHHHHcCHH
Confidence 77 34678999999999999875
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.64 E-value=6.7e-05 Score=75.41 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=85.9
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHHHH--HhccCCeeecccCh--H---Hhh
Q 010775 303 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFEV--KAKEKGFVASWCPQ--E---EVL 374 (501)
Q Consensus 303 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~p~~~~~--~~~~n~~~~~~vpq--~---~lL 374 (501)
+.+++..|.........+..+++++......+ ++.+|.+.... .+ ....+ .+++++.+.+|+++ . +.+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~---~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~ 255 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFE---KC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKI 255 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHH---HH-HHHHHHcCCCCeEEEecccCCcHHHHHHHH
Confidence 46677778764322333556666766554333 23334322100 01 11112 13467888998754 2 245
Q ss_pred cCCCccceEec----cCchhHHHhhhcCCceEecC-CCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 375 KHPSIGGFLTH----CGWNSIVESLCSGVPMICWP-FTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 375 ~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+ +.-..|..++ .-+.+++.++|.++++|
T Consensus 256 ~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~----~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 256 KNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYT----PGNIDEFVGKLNKVISG 324 (359)
T ss_pred hcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEEC----CCCHHHHHHHHHHHHhC
Confidence 55676 6643 22479999999999999875 332 22234 5545677774 46999999999999998
Q ss_pred hh---hHHHHHHHHHHHH
Q 010775 450 EK---GKQMRNKAMEWKG 464 (501)
Q Consensus 450 ~~---~~~~r~~a~~~~~ 464 (501)
++ ...++++++++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 325 EVKYQHDAIPNSIERFYE 342 (359)
T ss_pred cccCCHHHHHHHHHHhhH
Confidence 86 2234444444444
No 77
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.58 E-value=0.00059 Score=67.60 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=69.0
Q ss_pred cCCeeecccCh-HHhhcCCCccceEeccC----chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCc
Q 010775 360 EKGFVASWCPQ-EEVLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 434 (501)
Q Consensus 360 ~n~~~~~~vpq-~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~ 434 (501)
+++.+.+...+ ..++..+++ +|..+. -+++.||+++|+|+|+.. ...+...+ +. .|..++ .-
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~----~~ 317 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVP----PG 317 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeC----CC
Confidence 45666555543 458888998 776544 379999999999999854 34455555 44 566663 35
Q ss_pred cHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010775 435 IRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 485 (501)
Q Consensus 435 ~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~ 485 (501)
+.+++.++|.+++++++ .+++..++..+.+++ .-+-...++++.+
T Consensus 318 ~~~~l~~~i~~l~~~~~--~~~~~~~~~~~~~~~----~~s~~~~~~~~~~ 362 (365)
T cd03807 318 DPEALAEAIEALLADPA--LRQALGEAARERIEE----NFSIEAMVEAYEE 362 (365)
T ss_pred CHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence 68999999999999864 244444444444443 2444455555544
No 78
>PLN02949 transferase, transferring glycosyl groups
Probab=98.51 E-value=0.00065 Score=70.32 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=60.5
Q ss_pred ccCCeeecccChHH---hhcCCCccceEe---ccCch-hHHHhhhcCCceEecCCCCchhhhHHhhhhh-hc-ceeeecC
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNE-WG-VGMEING 429 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-~g-~G~~l~~ 429 (501)
.+++.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+--.+. +.+. -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eI---V~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDI---VLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCccee---eecCCCCcccccC--
Confidence 56788899998665 6778887 763 23444 799999999999998764411111 1011 01 23222
Q ss_pred CCCCccHHHHHHHHHHHhcC-hh-hHHHHHHHHHHHHH
Q 010775 430 DDEDVIRNEVEKLVREMMEG-EK-GKQMRNKAMEWKGL 465 (501)
Q Consensus 430 ~~~~~~~~~l~~ai~~vl~~-~~-~~~~r~~a~~~~~~ 465 (501)
. +.++++++|.+++++ ++ -+++.+++++..+.
T Consensus 407 --~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 407 --T--TVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred --C--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2 789999999999984 33 22455565554433
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.51 E-value=9.2e-05 Score=72.88 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=56.9
Q ss_pred ccCCeeecccCh-HHhhcCCCccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 359 KEKGFVASWCPQ-EEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 359 ~~n~~~~~~vpq-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
.+++.+.++++. .+++..+++ +|.- |.-+++.||+++|+|+|+.... .....+ +..+.|...+ .
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~----~ 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVP----V 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEEC----C
Confidence 456777888775 358888888 6632 3346899999999999985443 445556 6657788774 4
Q ss_pred ccHHHH---HHHHHHHhcChh
Q 010775 434 VIRNEV---EKLVREMMEGEK 451 (501)
Q Consensus 434 ~~~~~l---~~ai~~vl~~~~ 451 (501)
-+.+.+ .+++.+++.+++
T Consensus 314 ~~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 314 GDEAALAAAALALLDLLLDPE 334 (353)
T ss_pred CCHHHHHHHHHHHHhccCChH
Confidence 567777 555666666654
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.50 E-value=0.00025 Score=70.76 Aligned_cols=107 Identities=8% Similarity=0.079 Sum_probs=68.2
Q ss_pred ccCCeeecccCh-HHhhcCCCccceEecc----CchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 359 KEKGFVASWCPQ-EEVLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 359 ~~n~~~~~~vpq-~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
.+|+.+.++..+ ..+|..+++ +|.-. .-+++.||+++|+|+|+. |...+...+ +. .|..+ ..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~----~~ 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIV----PI 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEe----CC
Confidence 356778887765 468888888 65532 246899999999999974 445555555 44 45555 34
Q ss_pred ccHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010775 434 VIRNEVEKLVREMME-GEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 485 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~-~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~ 485 (501)
-+.+++.++|.++++ ++. +++...+-...+.+ .-+.+..++++.+
T Consensus 311 ~~~~~~~~~i~~ll~~~~~---~~~~~~~~~~~~~~----~~s~~~~~~~~~~ 356 (360)
T cd04951 311 SDPEALANKIDEILKMSGE---ERDIIGARRERIVK----KFSINSIVQQWLT 356 (360)
T ss_pred CCHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 678999999999985 443 44444433333332 3444444444443
No 81
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.47 E-value=0.00019 Score=70.85 Aligned_cols=128 Identities=10% Similarity=-0.026 Sum_probs=76.4
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHH-H--hccCCeeecccChHH---hhcCC
Q 010775 304 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEV-K--AKEKGFVASWCPQEE---VLKHP 377 (501)
Q Consensus 304 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~-~--~~~n~~~~~~vpq~~---lL~~~ 377 (501)
.+++..|.... ..-...+++++++.+.++++.-.+... . ....... . +.+++.+.+++++.+ +++.+
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~-~----~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDP-D----YFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCH-H----HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 44555677642 222345666777777666654332111 0 0011111 1 257888999999754 68888
Q ss_pred CccceEe--ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 378 SIGGFLT--HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 378 ~~~~~I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
++-++-+ +-|. .++.||+++|+|+|+.... .....+ +.-..|...+ . .+++.++|.+++..
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~----~--~~~l~~~l~~l~~~ 308 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD----S--VEELAAAVARADRL 308 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC----C--HHHHHHHHHHHhcc
Confidence 8822222 2343 4899999999999987653 233344 4423576653 3 89999999988764
No 82
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.44 E-value=6.8e-05 Score=75.32 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=77.6
Q ss_pred CceEEEeecccc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh--ccCCeeecccC---hHHh
Q 010775 302 KSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASWCP---QEEV 373 (501)
Q Consensus 302 ~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~--~~n~~~~~~vp---q~~l 373 (501)
++.|++++=-.. ....+.+..+++++...+.++++...... ++... .-....... .+|+.+.+.++ ...+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~~~-i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGSRI-INEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCchH-HHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 357778775432 23456788899999887766666653221 11000 111111111 35777765544 4568
Q ss_pred hcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 374 LKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 374 L~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
+.++++ +|+-++.|- .||.+.|+|+|.+- +.+ . . .+.|..+.+ -..++++|.+++.+++.
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e-~-~~~g~nvl~----vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---K-G-RLRADSVID----VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---h-h-hhhcCeEEE----eCCCHHHHHHHHHHHhC
Confidence 889999 998875544 99999999999774 211 1 1 112333221 24678999999998554
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.44 E-value=0.00052 Score=68.59 Aligned_cols=127 Identities=15% Similarity=0.188 Sum_probs=71.3
Q ss_pred EEEeeccccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHHH--HHhccCCeeecccChHH---hhcCCC
Q 010775 305 IYVNFGSFIFMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFE--VKAKEKGFVASWCPQEE---VLKHPS 378 (501)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~p~~~~--~~~~~n~~~~~~vpq~~---lL~~~~ 378 (501)
.++..|+.... .-+..+++++.....++ ++.+|....... +-.... ....+++.+.+++++.+ ++..++
T Consensus 195 ~i~~~G~~~~~--Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~---~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 195 YYLLVGRIVPE--NNIDDLIEAFSKSNSGKKLVIVGNADHNTP---YGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEEeccccc--CCHHHHHHHHHhhccCceEEEEcCCCCcch---HHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 34567887532 22444556665554322 333443211110 111111 12346888899999865 566667
Q ss_pred ccceEeccCc-----hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 379 IGGFLTHCGW-----NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 379 ~~~~I~HGG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
+ ++-+.-. +++.||+++|+|+|+....+ +...+ +. .|...+. .. .+.++|.+++++++
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~--~~----~l~~~i~~l~~~~~ 332 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKV--GD----DLASLLEELEADPE 332 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecC--ch----HHHHHHHHHHhCHH
Confidence 6 6654433 47999999999999875542 22223 32 3444432 21 19999999999864
No 84
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.42 E-value=0.00013 Score=72.20 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=86.8
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCCCCCchHHHHHhcc--CCeeecccChHHhhcCCCc
Q 010775 303 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHP-FLWIIRPDLVTGETADLPAEFEVKAKE--KGFVASWCPQEEVLKHPSI 379 (501)
Q Consensus 303 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~p~~~~~~~~~--n~~~~~~vpq~~lL~~~~~ 379 (501)
++|.+--||-..--...+..++++....... ..+.+..... . +.+.+...+ .+.+.+ .-.+++..+++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~------~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl 238 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK------G-KDLKEIYGDISEFEISY--DTHKALLEAEF 238 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc------H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH
Confidence 5899989997532224445444555433321 2232221110 1 122222211 222222 33568999999
Q ss_pred cceEeccCchhHHHhhhcCCceEecCC--CCchhhhHHhhhh--hhcceeeecC-----------CCCCccHHHHHHHHH
Q 010775 380 GGFLTHCGWNSIVESLCSGVPMICWPF--TGDQPTNGRYVCN--EWGVGMEING-----------DDEDVIRNEVEKLVR 444 (501)
Q Consensus 380 ~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~--~~g~G~~l~~-----------~~~~~~~~~l~~ai~ 444 (501)
+|+-.|..|+ |+..+|+|+|+ ++ ..-|..||++++. ..|+..-+.. .+++.|++.|.+++.
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~ 314 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYK 314 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHH
Confidence 9999999999 99999999998 55 3468889999831 4455444411 116799999999997
Q ss_pred HHhcChhhHHHHHHHHHHHHHH
Q 010775 445 EMMEGEKGKQMRNKAMEWKGLA 466 (501)
Q Consensus 445 ~vl~~~~~~~~r~~a~~~~~~~ 466 (501)
+ ...+ ++++...++.+.+
T Consensus 315 ~-~~~~---~~~~~~~~l~~~l 332 (347)
T PRK14089 315 E-MDRE---KFFKKSKELREYL 332 (347)
T ss_pred H-HHHH---HHHHHHHHHHHHh
Confidence 7 2222 2555555555544
No 85
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.38 E-value=0.0016 Score=66.85 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=55.9
Q ss_pred ccCCeeecccChHH---hhcCCCccceEecc---Cc-hhHHHhhhcCCceEecCCCCchhhhHHhhhh---hhcceeeec
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLTHC---GW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCN---EWGVGMEIN 428 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~---~~g~G~~l~ 428 (501)
.++|.+.+++|+.+ +|..+++ +|+-. |. .++.||+++|+|+|+.-..+.-. ..+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---hee-eccCCCCceEEe-
Confidence 46788899998764 7888888 66421 22 38899999999999865443211 112 2 22456553
Q ss_pred CCCCCccHHHHHHHHHHHhcChh
Q 010775 429 GDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 429 ~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
. ++++++++|.++++++.
T Consensus 377 ---~--d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ---S--TAEEYAEAIEKILSLSE 394 (419)
T ss_pred ---C--CHHHHHHHHHHHHhCCH
Confidence 3 78999999999998653
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.37 E-value=0.00087 Score=68.72 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=51.5
Q ss_pred eecccChHHhhcCCCccceEecc----CchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHH
Q 010775 364 VASWCPQEEVLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEV 439 (501)
Q Consensus 364 ~~~~vpq~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l 439 (501)
+.++.+..+++...++ ||.=+ =-.++.||+++|+|+|+.-..+ + ..+ ..-+-|... -+.+++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~------~~~~~~ 353 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY------DDGKGF 353 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec------CCHHHH
Confidence 4566666679988888 88663 3468999999999999976543 2 323 333444333 257899
Q ss_pred HHHHHHHhcCh
Q 010775 440 EKLVREMMEGE 450 (501)
Q Consensus 440 ~~ai~~vl~~~ 450 (501)
.++|.++|+++
T Consensus 354 a~ai~~~l~~~ 364 (462)
T PLN02846 354 VRATLKALAEE 364 (462)
T ss_pred HHHHHHHHccC
Confidence 99999999854
No 87
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.34 E-value=0.0013 Score=65.47 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=58.3
Q ss_pred ccCCeeecccCh-HHhhcCCCccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 359 KEKGFVASWCPQ-EEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 359 ~~n~~~~~~vpq-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
.+++.+.++..+ .+++..+++ +|+- |--.++.||+++|+|+|+....+ ....+ +. +.|... ..
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~----~~ 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLS----LD 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEe----CC
Confidence 457777887554 458888888 6643 34579999999999999866544 23334 44 555554 33
Q ss_pred ccHHHHHHHHHHHhcChh
Q 010775 434 VIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~~~~ 451 (501)
-++++++++|.++++|++
T Consensus 316 ~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 316 ESPEIWAEEILKLKSEDR 333 (358)
T ss_pred CCHHHHHHHHHHHHhCcc
Confidence 458999999999999886
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=0.0025 Score=63.09 Aligned_cols=307 Identities=16% Similarity=0.192 Sum_probs=171.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEe-CCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVN-TEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (501)
-.+.+=.-+.|-++-.+.|.++|.++ ++.+++-+ ++.-.+.+.+..++ .+....+| -+
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~-------~v~h~YlP----~D-------- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD-------SVIHQYLP----LD-------- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC-------CeEEEecC----cC--------
Confidence 34445556779999999999999999 88888766 66666666665332 24444444 11
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEE-EcC-CcchHHHHHHHcCCCeEEEeccchhHHHHHhhhhh
Q 010775 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCII-SDG-FLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQT 166 (501)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi-~D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 166 (501)
. ...+.++++.+ +||++| ++. +++..+.-+++.|+|.+.+.-=
T Consensus 111 ------------~-~~~v~rFl~~~---------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR------------- 155 (419)
T COG1519 111 ------------L-PIAVRRFLRKW---------RPKLLIIMETELWPNLINELKRRGIPLVLVNAR------------- 155 (419)
T ss_pred ------------c-hHHHHHHHHhc---------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------
Confidence 0 12345556665 777776 333 4556778899999999997110
Q ss_pred hhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCCcchHHHHHHH-HHhhcccCcEEEEcChhHhhHH
Q 010775 167 FKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVE-ATENASKASAIIIHTFDALEQQ 245 (501)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s~~~le~~ 245 (501)
.+..+ +.++ +.+.. ....+...++++..|-..-+-
T Consensus 156 LS~rS---------------------~~~y----------------------~k~~~~~~~~~~~i~li~aQse~D~~R- 191 (419)
T COG1519 156 LSDRS---------------------FARY----------------------AKLKFLARLLFKNIDLILAQSEEDAQR- 191 (419)
T ss_pred echhh---------------------hHHH----------------------HHHHHHHHHHHHhcceeeecCHHHHHH-
Confidence 00000 0000 01111 122234566777776332211
Q ss_pred HHHHHhhh-CCCceEEeCccccccccchhccccccccCCCcccchhhhhccccCCCCCceEEEeeccccccCHHHHHHHH
Q 010775 246 VLNALSFM-FPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 324 (501)
Q Consensus 246 ~l~~~~~~-~p~~v~~vG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~ 324 (501)
.+.. .++ +...|-+-.+....+. . ...-+.+...++.. ..+.+..+|.. -..+..-...
T Consensus 192 ----f~~LGa~~-v~v~GNlKfd~~~~~~----------~-~~~~~~~r~~l~~~---r~v~iaaSTH~-GEeei~l~~~ 251 (419)
T COG1519 192 ----FRSLGAKP-VVVTGNLKFDIEPPPQ----------L-AAELAALRRQLGGH---RPVWVAASTHE-GEEEIILDAH 251 (419)
T ss_pred ----HHhcCCcc-eEEecceeecCCCChh----------h-HHHHHHHHHhcCCC---CceEEEecCCC-chHHHHHHHH
Confidence 1121 233 7888877544332110 0 00011233334332 36666666643 2333344445
Q ss_pred HHHHhCC--CCEEEEEcCCCCCCCCCCCchHHHHHhc------------------cCCeeecccCh-HHhhcCCCc----
Q 010775 325 MGLVNSN--HPFLWIIRPDLVTGETADLPAEFEVKAK------------------EKGFVASWCPQ-EEVLKHPSI---- 379 (501)
Q Consensus 325 ~al~~~~--~~~i~~~~~~~~~~~~~~~p~~~~~~~~------------------~n~~~~~~vpq-~~lL~~~~~---- 379 (501)
.++.+.. ..+||+=+-.+. +++ +.+-+. .++.+.+-+-- ..+++-+++
T Consensus 252 ~~l~~~~~~~llIlVPRHpER------f~~-v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVG 324 (419)
T COG1519 252 QALKKQFPNLLLILVPRHPER------FKA-VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVG 324 (419)
T ss_pred HHHHhhCCCceEEEecCChhh------HHH-HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEEC
Confidence 5554432 345665442221 111 111111 13333333322 223333333
Q ss_pred cceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 380 GGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 380 ~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
+-++.+||.| ..|++++|+|+|.=|+..-|.+.++++ .+.|.|+.+ ++ ++.|.+++..+++|++
T Consensus 325 GSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v----~~--~~~l~~~v~~l~~~~~ 388 (419)
T COG1519 325 GSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQV----ED--ADLLAKAVELLLADED 388 (419)
T ss_pred CcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEE----CC--HHHHHHHHHHhcCCHH
Confidence 1245688886 689999999999999999999999999 778999998 34 8889999998888765
No 89
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.31 E-value=0.00015 Score=73.88 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=58.6
Q ss_pred ccCCeeecccChH-HhhcCCCccceE--ec--cCch-hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCC
Q 010775 359 KEKGFVASWCPQE-EVLKHPSIGGFL--TH--CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 432 (501)
Q Consensus 359 ~~n~~~~~~vpq~-~lL~~~~~~~~I--~H--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~ 432 (501)
.+++.+.+++++. .++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. +....|.|..+ .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv----~ 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLV----A 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEe----C
Confidence 3578889999864 48888998 66 32 4553 699999999999998764322 11223567665 4
Q ss_pred CccHHHHHHHHHHHhcChh
Q 010775 433 DVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 433 ~~~~~~l~~ai~~vl~~~~ 451 (501)
-++++++++|.++++|++
T Consensus 347 -~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 347 -ADPADFAAAILALLANPA 364 (397)
T ss_pred -CCHHHHHHHHHHHHcCHH
Confidence 578999999999999875
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.31 E-value=0.0019 Score=65.39 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=88.7
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchHHHH---Hhc---cCCee-ecccChH--
Q 010775 303 SVIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEV---KAK---EKGFV-ASWCPQE-- 371 (501)
Q Consensus 303 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~p~~~~~---~~~---~n~~~-~~~vpq~-- 371 (501)
.++++..|.... ..-+..++++++.. +.++++..++..... +-+.+.+ .+. +++.+ .+++++.
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE----VAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH----HHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 456777787652 22344555565544 345554433322100 1111111 111 23443 4677754
Q ss_pred -HhhcCCCccceEec---cC-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCcc----HHHHHHH
Q 010775 372 -EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI----RNEVEKL 442 (501)
Q Consensus 372 -~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~----~~~l~~a 442 (501)
.++..+++ +|.= -| -.++.||+++|+|+|+.... .....+ +.-+.|..++. ...+ .+++.++
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~--~~~~~~~~~~~l~~~ 345 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPP--DNSDADGFQAELAKA 345 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCC--CCCcccchHHHHHHH
Confidence 37888998 7642 22 35779999999999986543 344445 55456888754 3222 2889999
Q ss_pred HHHHhcChhh-HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010775 443 VREMMEGEKG-KQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 488 (501)
Q Consensus 443 i~~vl~~~~~-~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~ 488 (501)
|.++++|++- +++.+++++. +. +.-+-+..++++++.+.
T Consensus 346 i~~l~~~~~~~~~~~~~a~~~---~~----~~~s~~~~~~~~~~~y~ 385 (388)
T TIGR02149 346 INILLADPELAKKMGIAGRKR---AE----EEFSWGSIAKKTVEMYR 385 (388)
T ss_pred HHHHHhCHHHHHHHHHHHHHH---HH----HhCCHHHHHHHHHHHHH
Confidence 9999988751 1233333332 22 12444555566555543
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.29 E-value=0.0036 Score=63.18 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=52.5
Q ss_pred cCCeee-cccChHH---hhcCCCccceEe-c-----cC-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeec
Q 010775 360 EKGFVA-SWCPQEE---VLKHPSIGGFLT-H-----CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 428 (501)
Q Consensus 360 ~n~~~~-~~vpq~~---lL~~~~~~~~I~-H-----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~ 428 (501)
+|+.+. .|+|+.+ +|..+++ +|. + -| -+++.||+++|+|+|+.... .....+ +.-+.|..+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv- 357 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLF- 357 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEE-
Confidence 355554 4788765 5888998 763 1 12 24799999999999996542 245555 665678876
Q ss_pred CCCCCccHHHHHHHHHHHh
Q 010775 429 GDDEDVIRNEVEKLVREMM 447 (501)
Q Consensus 429 ~~~~~~~~~~l~~ai~~vl 447 (501)
. +.+++.++|.+++
T Consensus 358 ---~--~~~~la~~i~~l~ 371 (371)
T PLN02275 358 ---S--SSSELADQLLELL 371 (371)
T ss_pred ---C--CHHHHHHHHHHhC
Confidence 4 4789999998764
No 92
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.00098 Score=65.29 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=97.5
Q ss_pred CceEEEeeccccccCHHHHHHHHH----HHHhCCCCEEEEEcCCCCCCCCCCCchHH-HHHhcc--CCee---ecccChH
Q 010775 302 KSVIYVNFGSFIFMNKQQLIEVAM----GLVNSNHPFLWIIRPDLVTGETADLPAEF-EVKAKE--KGFV---ASWCPQE 371 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~~~~~~~~~~~----al~~~~~~~i~~~~~~~~~~~~~~~p~~~-~~~~~~--n~~~---~~~vpq~ 371 (501)
+..|.+|+=-..+.. +.++.+.+ .++.. ..+..++....... . ..+ ..++.+ |+.+ .+|.+..
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~~~----v-~e~~~~~L~~~~~v~li~pl~~~~f~ 276 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPRPR----V-RELVLKRLKNVERVKLIDPLGYLDFH 276 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCChh----h-hHHHHHHhCCCCcEEEeCCcchHHHH
Confidence 458888764443333 33444444 44444 33344444332211 1 111 233443 4665 5677888
Q ss_pred HhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 372 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 372 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
.++.++-+ ++|-.| |-.-||-..|+|++++=...++|. ++ +. |.-+.+ ..+.+.+.+++.+++++++
T Consensus 277 ~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lv-----g~~~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 277 NLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILV-----GTDEENILDAATELLEDEE 343 (383)
T ss_pred HHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEe-----CccHHHHHHHHHHHhhChH
Confidence 89999988 999888 567899999999999999999998 44 32 444333 4677999999999999887
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 010775 452 GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNE 486 (501)
Q Consensus 452 ~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~ 486 (501)
..++++.... -+++|.+++++++-+...
T Consensus 344 ---~~~~m~~~~n----pYgdg~as~rIv~~l~~~ 371 (383)
T COG0381 344 ---FYERMSNAKN----PYGDGNASERIVEILLNY 371 (383)
T ss_pred ---HHHHHhcccC----CCcCcchHHHHHHHHHHH
Confidence 6655544333 233455555555544433
No 93
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.25 E-value=4.1e-06 Score=69.66 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=80.1
Q ss_pred ceEEEeeccccccC--HH-HHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHHH-HhccCC--eeecccCh-HHhh
Q 010775 303 SVIYVNFGSFIFMN--KQ-QLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFEV-KAKEKG--FVASWCPQ-EEVL 374 (501)
Q Consensus 303 ~~V~vs~Gs~~~~~--~~-~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~p~~~~~-~~~~n~--~~~~~vpq-~~lL 374 (501)
..+||+-||..... .. .-+.+.+.+.+.|. +.|.+++.+..- .++.... +.-+.+ ...+|-|- .+.+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-----~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-----FGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-----CCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 48999999986321 11 23447777888886 778888866321 2222111 111122 23677786 5678
Q ss_pred cCCCccceEeccCchhHHHhhhcCCceEecCC----CCchhhhHHhhhhhhcceeee
Q 010775 375 KHPSIGGFLTHCGWNSIVESLCSGVPMICWPF----TGDQPTNGRYVCNEWGVGMEI 427 (501)
Q Consensus 375 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~~g~G~~l 427 (501)
+.+++ +|.|+|+||+.|.|+.|+|.|+++= -.+|-..|..+ ++.|.=..=
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL-~~egyL~~C 132 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQL-AEEGYLYYC 132 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHH-HhcCcEEEe
Confidence 88888 9999999999999999999999993 56899999999 444655443
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.24 E-value=0.00075 Score=67.19 Aligned_cols=90 Identities=11% Similarity=0.196 Sum_probs=61.1
Q ss_pred hccCCeeecccChHH---hhcCCCccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCC
Q 010775 358 AKEKGFVASWCPQEE---VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 430 (501)
Q Consensus 358 ~~~n~~~~~~vpq~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~ 430 (501)
..+++.+.+++|+.+ +|..+++ +|.- |..+++.||+++|+|+|+.... .....+ . ..|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~--~~~~~~~-- 319 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-G--DAALYFD-- 319 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-c--CceeeeC--
Confidence 456888899998764 6778887 5532 3345899999999999985542 222223 3 2455553
Q ss_pred CCCccHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 010775 431 DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWK 463 (501)
Q Consensus 431 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~ 463 (501)
.-+.+++.++|.+++.|++ .+.+..+-+
T Consensus 320 --~~~~~~~~~~i~~l~~~~~---~~~~~~~~~ 347 (365)
T cd03809 320 --PLDPEALAAAIERLLEDPA---LREELRERG 347 (365)
T ss_pred --CCCHHHHHHHHHHHhcCHH---HHHHHHHHH
Confidence 3488999999999999887 444444333
No 95
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.24 E-value=0.0006 Score=71.05 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=83.6
Q ss_pred CCCceEEEeeccccccCHHHHHHHHHHHH--hC--CCCEEEEEcCCCCCCCCCCCchHHHHHhcc-C---CeeecccChH
Q 010775 300 EPKSVIYVNFGSFIFMNKQQLIEVAMGLV--NS--NHPFLWIIRPDLVTGETADLPAEFEVKAKE-K---GFVASWCPQE 371 (501)
Q Consensus 300 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~-n---~~~~~~vpq~ 371 (501)
+++++|-+-.||-.+-=...+..++++.+ .. +.+++....... ..+.+.+.+.+ + +.+..--...
T Consensus 411 ~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~-------~~~~i~~~~~~~~~~~~~ii~~~~~~ 483 (608)
T PRK01021 411 SDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK-------YDHLILEVLQQEGCLHSHIVPSQFRY 483 (608)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh-------hHHHHHHHHhhcCCCCeEEecCcchH
Confidence 34578989889875322334555666655 33 234444322111 01112221211 1 1222100125
Q ss_pred HhhcCCCccceEeccCchhHHHhhhcCCceEecC-CCCchhhhHHhhhh-----------hhc--ceeeec--CCCCCcc
Q 010775 372 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWP-FTGDQPTNGRYVCN-----------EWG--VGMEIN--GDDEDVI 435 (501)
Q Consensus 372 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~~-----------~~g--~G~~l~--~~~~~~~ 435 (501)
+++..+++ .+.-.|- .+.|+...|+|||++= ...=-...++++++ -+| +=.++- . .+.|
T Consensus 484 ~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ--~~~t 558 (608)
T PRK01021 484 ELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK--KDFQ 558 (608)
T ss_pred HHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc--ccCC
Confidence 79999998 8877774 5789999999999843 22223345566533 011 111221 2 4789
Q ss_pred HHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHH
Q 010775 436 RNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAE 467 (501)
Q Consensus 436 ~~~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~~ 467 (501)
++.|.+++ ++|.|++ -+++++..+++.+.+.
T Consensus 559 pe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 559 PEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 99999997 7887765 2345555555555543
No 96
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.19 E-value=0.0099 Score=59.89 Aligned_cols=110 Identities=14% Similarity=0.116 Sum_probs=68.8
Q ss_pred cCCeeecccCh-HHhhcCCCccceEe--c--cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCc
Q 010775 360 EKGFVASWCPQ-EEVLKHPSIGGFLT--H--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 434 (501)
Q Consensus 360 ~n~~~~~~vpq-~~lL~~~~~~~~I~--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~ 434 (501)
.++.+.++..+ .++|..+++ +|. + |--.++.||+++|+|+|+-...+ +...+ +.-..|..+ ..-
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i-~~~~~g~~~----~~~ 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELV-QHGVTGALV----PPG 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHh-cCCCceEEe----CCC
Confidence 34555555443 468899998 663 2 33469999999999999966533 34444 443567777 346
Q ss_pred cHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 435 IRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 435 ~~~~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
+.+++.++|.+++++++ .+.+.+++++. +. +.-+.+..++++++..
T Consensus 324 d~~~la~~i~~l~~~~~~~~~~~~~a~~~---~~----~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 324 DAVALARALQPYVSDPAARRAHGAAGRAR---AE----QQFSINAMVAAYAGLY 370 (374)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HH----HhCCHHHHHHHHHHHH
Confidence 78999999999998765 11233333332 22 1344555555555544
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.15 E-value=0.00027 Score=70.65 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=84.6
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChH---HhhcCCCcc
Q 010775 304 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE---EVLKHPSIG 380 (501)
Q Consensus 304 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~---~lL~~~~~~ 380 (501)
..++..|+... ......++++++..+.+++++-.+. ..+.+.+...+|+.+.+++|+. .+|..+++
T Consensus 196 ~~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 196 DYYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred CEEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 34556677642 2335667777777776665543321 1123333456899999999985 47888888
Q ss_pred ceEe--ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 381 GFLT--HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 381 ~~I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
+|. .-|. .++.||+++|+|+|+....+ ....+ +.-+.|..++ .-+.++++++|.++++|+
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~----~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFE----EQTVESLAAAVERFEKNE 327 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeC----CCCHHHHHHHHHHHHhCc
Confidence 553 3444 36789999999999976543 33334 4446788874 457899999999999987
No 98
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.14 E-value=0.0019 Score=67.38 Aligned_cols=134 Identities=12% Similarity=0.115 Sum_probs=73.1
Q ss_pred CceEEEeeccccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchH---HHHHhccCCee-ecccChH--Hhh
Q 010775 302 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAE---FEVKAKEKGFV-ASWCPQE--EVL 374 (501)
Q Consensus 302 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~---~~~~~~~n~~~-~~~vpq~--~lL 374 (501)
+.++++..|.... -+.+.+...+.-+...+.++++. +.+.. . ..+. ...+.+.++.+ .+|-... .++
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~~-~----~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGDP-E----LEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCcH-H----HHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 4567777787753 22333222222232335566554 32210 0 1111 22334455543 4563222 478
Q ss_pred cCCCccceEe---ccCch-hHHHhhhcCCceEecCCCC--chhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 375 KHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 375 ~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
..+++ +|. +-|.| +..||+++|+|+|+....+ |.-.+...- ..-+.|..+ ..-++++|.++|.++++
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv----~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVF----DDFNAEDLLRALRRALE 427 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEe----CCCCHHHHHHHHHHHHH
Confidence 88888 774 34554 8899999999999865432 211111000 112678887 45678999999999886
No 99
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.13 E-value=0.0011 Score=65.99 Aligned_cols=163 Identities=17% Similarity=0.093 Sum_probs=88.8
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHH---hC--CCCEEEEEcCCCCCCCCCCCchHHH---HHhccCCeee-cccChH
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLV---NS--NHPFLWIIRPDLVTGETADLPAEFE---VKAKEKGFVA-SWCPQE 371 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~---~~--~~~~i~~~~~~~~~~~~~~~p~~~~---~~~~~n~~~~-~~vpq~ 371 (501)
++++|-+--||-..--...+..++++.+ +. +.++++...... ....+. .....++.+. ..-.-.
T Consensus 183 ~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~ 255 (373)
T PF02684_consen 183 DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV-------HEELIEEILAEYPPDVSIVIIEGESY 255 (373)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH-------HHHHHHHHHHhhCCCCeEEEcCCchH
Confidence 4579999999874211223333444433 22 234554433211 111111 1112233332 222455
Q ss_pred HhhcCCCccceEeccCchhHHHhhhcCCceEecCC-CCchhhhHHhhhhh--hcc---------eeeecCCCCCccHHHH
Q 010775 372 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF-TGDQPTNGRYVCNE--WGV---------GMEINGDDEDVIRNEV 439 (501)
Q Consensus 372 ~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~~DQ~~na~rv~~~--~g~---------G~~l~~~~~~~~~~~l 439 (501)
++|..+++ .+.-.|- .+.|+...|+|||++=- ..=....|+++++- .|+ -.++-. +..|++.|
T Consensus 256 ~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ--~~~~~~~i 330 (373)
T PF02684_consen 256 DAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQ--EDATPENI 330 (373)
T ss_pred HHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhc--ccCCHHHH
Confidence 68988888 6666664 67899999999998533 22344566665321 121 111112 78999999
Q ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHH
Q 010775 440 EKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSL 478 (501)
Q Consensus 440 ~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~ 478 (501)
.+++.++++|++ .++..+...+.+++..+.|.++..
T Consensus 331 ~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 331 AAELLELLENPE---KRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHHhcCHH---HHHHHHHHHHHHHHhhhhccCCHH
Confidence 999999999986 444444444444444334555433
No 100
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.10 E-value=0.025 Score=61.59 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=52.1
Q ss_pred cCCeeeccc-Ch---HHhhcC-C---CccceEe---ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeee
Q 010775 360 EKGFVASWC-PQ---EEVLKH-P---SIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEI 427 (501)
Q Consensus 360 ~n~~~~~~v-pq---~~lL~~-~---~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l 427 (501)
+++.+.++. +. .+++.+ + ++ ||. .=|. .++.||+++|+|+|+--.. .....| +.-.-|..+
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfLV 691 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFHI 691 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEe
Confidence 566666654 32 235543 2 34 664 2233 4999999999999986554 344445 443458888
Q ss_pred cCCCCCccHHHHHHHHHHHh----cChh
Q 010775 428 NGDDEDVIRNEVEKLVREMM----EGEK 451 (501)
Q Consensus 428 ~~~~~~~~~~~l~~ai~~vl----~~~~ 451 (501)
+ .-++++++++|.+++ .|++
T Consensus 692 d----p~D~eaLA~aL~~ll~kll~dp~ 715 (784)
T TIGR02470 692 D----PYHGEEAAEKIVDFFEKCDEDPS 715 (784)
T ss_pred C----CCCHHHHHHHHHHHHHHhcCCHH
Confidence 4 457899999998876 4654
No 101
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.07 E-value=0.00022 Score=70.95 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=83.7
Q ss_pred CCCceEEEeeccccccC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHHhc--cCCeeecccCh--
Q 010775 300 EPKSVIYVNFGSFIFMN-K---QQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFVASWCPQ-- 370 (501)
Q Consensus 300 ~~~~~V~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~p~~~~~~~~--~n~~~~~~vpq-- 370 (501)
.+++.|++++=...... + ..+..+++++... +.++||.+.+... .-..+.+.+. +|+.+.+-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~------~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR------GSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH------HHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch------HHHHHHHHhcccCCEEEECCCCHHH
Confidence 45679999985444433 3 3455566666555 6678888763321 0111222221 47887665554
Q ss_pred -HHhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 371 -EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 371 -~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
..+|.++++ +|+-.| |-.-||.+.|+|+|.+ -|+-.+=.-+ . .|..+-+ . .+.++|.+++++++.+
T Consensus 252 ~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r-~-~~~nvlv----~-~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGR-E-RGSNVLV----G-TDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHHH-H-TTSEEEE----T-SSHHHHHHHHHHHHH-
T ss_pred HHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHH-h-hcceEEe----C-CCHHHHHHHHHHHHhC
Confidence 568889999 999999 4444999999999999 2222222212 1 2444443 3 7899999999999987
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 010775 450 EKGKQMRNKAMEWKGLAEEAAAPHGSSSLNL 480 (501)
Q Consensus 450 ~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~ 480 (501)
.. ..++... ..+-+.+|.++.+++
T Consensus 319 ~~---~~~~~~~----~~npYgdG~as~rI~ 342 (346)
T PF02350_consen 319 KD---FYRKLKN----RPNPYGDGNASERIV 342 (346)
T ss_dssp HH---HHHHHHC----S--TT-SS-HHHHHH
T ss_pred hH---HHHhhcc----CCCCCCCCcHHHHHH
Confidence 44 4444443 223344455544443
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.06 E-value=0.0057 Score=61.68 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=66.6
Q ss_pred ccCCeeeccc--ChH---HhhcCCCccceEecc---C-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecC
Q 010775 359 KEKGFVASWC--PQE---EVLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 429 (501)
Q Consensus 359 ~~n~~~~~~v--pq~---~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~ 429 (501)
.+++.+.++. ++. .++..+++ |+.-. | -.++.||+++|+|+|+....+ ....+ +.-..|...
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~-- 321 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLV-- 321 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEe--
Confidence 3467777776 433 47788888 77533 3 349999999999999876432 22334 443456654
Q ss_pred CCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHH-HHHHhCCCCChHHHHHHHHHHHH
Q 010775 430 DDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGL-AEEAAAPHGSSSLNLDKLVNEIL 488 (501)
Q Consensus 430 ~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~-~~~~~~~gg~~~~~~~~li~~~~ 488 (501)
. +.+.++.+|.+++.+++ .++...+-+.. +. +.-+-+..++++++.+.
T Consensus 322 --~--~~~~~a~~i~~ll~~~~---~~~~~~~~a~~~~~----~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 322 --D--TVEEAAVRILYLLRDPE---LRRKMGANAREHVR----ENFLITRHLKDYLYLIS 370 (372)
T ss_pred --C--CcHHHHHHHHHHHcCHH---HHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHH
Confidence 2 35678889999998875 33332222222 22 13455666666666554
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.06 E-value=0.026 Score=61.12 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=64.0
Q ss_pred ccCCeeecccChH-HhhcCCCccceEe---ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 359 KEKGFVASWCPQE-EVLKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 359 ~~n~~~~~~vpq~-~lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
.++|.+.+|.+.. .+|..+++ +|. +.|. +++.||+++|+|+|+....+ ....+ +.-..|+.++. ..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV-~dg~~GlLv~~--~d 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAV-QEGVTGLTLPA--DT 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHc-cCCCCEEEeCC--CC
Confidence 4678888888754 48888888 664 5564 68999999999999976532 33445 55346888875 56
Q ss_pred ccHHHHHHHHHHHhc----ChhhHHHHHHHHHHH
Q 010775 434 VIRNEVEKLVREMME----GEKGKQMRNKAMEWK 463 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~----~~~~~~~r~~a~~~~ 463 (501)
.+.+++.+++.+++. ++. +++++++..
T Consensus 644 ~~~~~La~aL~~ll~~l~~~~~---l~~~ar~~a 674 (694)
T PRK15179 644 VTAPDVAEALARIHDMCAADPG---IARKAADWA 674 (694)
T ss_pred CChHHHHHHHHHHHhChhccHH---HHHHHHHHH
Confidence 677777777766654 444 666555443
No 104
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.00 E-value=0.0063 Score=63.61 Aligned_cols=130 Identities=9% Similarity=0.029 Sum_probs=75.1
Q ss_pred CceEEEeeccccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchH---HHHHhccCCeeecccChH---Hhh
Q 010775 302 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAE---FEVKAKEKGFVASWCPQE---EVL 374 (501)
Q Consensus 302 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~---~~~~~~~n~~~~~~vpq~---~lL 374 (501)
+.++++..|.... -+.+.+...+..+.+.+.++++. |.+. +. ..+. +..+.+.++.+....+.. .++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-~~----~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD-PE----LEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC-HH----HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 3467777788753 23333333333343344455543 3221 00 1111 222345566665555543 477
Q ss_pred cCCCccceEec---cCch-hHHHhhhcCCceEecCCCCchhhhHHhhhhhh------cceeeecCCCCCccHHHHHHHHH
Q 010775 375 KHPSIGGFLTH---CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEW------GVGMEINGDDEDVIRNEVEKLVR 444 (501)
Q Consensus 375 ~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~------g~G~~l~~~~~~~~~~~l~~ai~ 444 (501)
..+++ +|.= -|.| +..||+++|+|+|+-...+ ....+ ... +.|..+ ..-++++|.++|.
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~----~~~d~~~la~~i~ 432 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLF----EEYDPGALLAALS 432 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEe----CCCCHHHHHHHHH
Confidence 88888 7742 3444 8899999999999866533 22222 222 678877 4568899999999
Q ss_pred HHhc
Q 010775 445 EMME 448 (501)
Q Consensus 445 ~vl~ 448 (501)
+++.
T Consensus 433 ~~l~ 436 (473)
T TIGR02095 433 RALR 436 (473)
T ss_pred HHHH
Confidence 9887
No 105
>PLN00142 sucrose synthase
Probab=98.00 E-value=0.0064 Score=66.11 Aligned_cols=61 Identities=16% Similarity=0.314 Sum_probs=41.7
Q ss_pred eEe---ccCch-hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHh----cChh
Q 010775 382 FLT---HCGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM----EGEK 451 (501)
Q Consensus 382 ~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl----~~~~ 451 (501)
||. .-|.| ++.||+++|+|+|+....+ ....| +.-.-|..++ .-++++++++|.+++ .|++
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV-~dG~tG~LV~----P~D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEII-VDGVSGFHID----PYHGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEeC----CCCHHHHHHHHHHHHHHhcCCHH
Confidence 664 34554 8999999999999865533 44445 5434588875 357888888887654 5665
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.97 E-value=0.0042 Score=64.97 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=73.3
Q ss_pred CceEEEeeccccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHH---HHHhccCCeeecccChH---Hhh
Q 010775 302 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF---EVKAKEKGFVASWCPQE---EVL 374 (501)
Q Consensus 302 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~---~~~~~~n~~~~~~vpq~---~lL 374 (501)
+.++++..|.... -+.+.+...+..+.+.+.++++. +.+.. . ..+.+ ..+.++|+.+....++. .++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~~-~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVIL-GSGDP-E----YEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEE-ecCCH-H----HHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 4567777787752 22333333333333344454443 32210 0 11112 22234677654333332 377
Q ss_pred cCCCccceEec---cCc-hhHHHhhhcCCceEecCCCC--chhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 375 KHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 375 ~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
..+++ ++.- -|. .+.+||+++|+|+|+....+ |.-.....- ..-|.|..++ .-+++++.++|.++++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~----~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFE----GYNADALLAALRRALA 441 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeC----CCCHHHHHHHHHHHHH
Confidence 78888 6642 233 37899999999999866533 211111111 1235788884 4678999999999886
Q ss_pred C
Q 010775 449 G 449 (501)
Q Consensus 449 ~ 449 (501)
.
T Consensus 442 ~ 442 (476)
T cd03791 442 L 442 (476)
T ss_pred H
Confidence 3
No 107
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.97 E-value=0.02 Score=57.74 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=67.0
Q ss_pred ccCCeeecccChHH---hhcCCCccceE------eccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeec
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFL------THCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 428 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I------~HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~ 428 (501)
.+|+.+.+++|+.+ .|.++++..+- +.++. +.+.|++++|+|+|..++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 36899999999765 67788883321 23333 458999999999998763 1222 3323 33332
Q ss_pred CCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010775 429 GDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 489 (501)
Q Consensus 429 ~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~ 489 (501)
. -+.+++.++|.+++.++.-+.++.+ .+..+ ..+-+..++++.+.|.+
T Consensus 324 ---~-~d~~~~~~ai~~~l~~~~~~~~~~~----~~~~~-----~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 ---A-DDPEEFVAAIEKALLEDGPARERRR----LRLAA-----QNSWDARAAEMLEALQE 371 (373)
T ss_pred ---C-CCHHHHHHHHHHHHhcCCchHHHHH----HHHHH-----HCCHHHHHHHHHHHHHh
Confidence 2 3899999999998765431112211 11222 35666777777766655
No 108
>PLN02316 synthase/transferase
Probab=97.92 E-value=0.05 Score=60.93 Aligned_cols=117 Identities=7% Similarity=-0.029 Sum_probs=67.2
Q ss_pred cCCeeecccChH---HhhcCCCccceEec---cCc-hhHHHhhhcCCceEecCCCC--chhhhH----Hhh--hhhhcce
Q 010775 360 EKGFVASWCPQE---EVLKHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPFTG--DQPTNG----RYV--CNEWGVG 424 (501)
Q Consensus 360 ~n~~~~~~vpq~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na----~rv--~~~~g~G 424 (501)
+++.+....+.. .+++.+++ |+.- =|. .+.+||+++|+|.|+....+ |.-... .+. ...-+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 456554444443 57888888 8753 233 48999999999988865532 221111 000 0011467
Q ss_pred eeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 425 MEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 425 ~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
..+ ..-+++.|..+|.+++.+ |.+....+++..++++...-|-...+++.++-.
T Consensus 978 flf----~~~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 978 FSF----DGADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred EEe----CCCCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 777 457899999999999875 233333344444444434445445555544433
No 109
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.91 E-value=0.0031 Score=66.03 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=68.0
Q ss_pred ccCCeeecccChHHhhcCCCccceEe---ccCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCc
Q 010775 359 KEKGFVASWCPQEEVLKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 434 (501)
Q Consensus 359 ~~n~~~~~~vpq~~lL~~~~~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~ 434 (501)
.+++.+.++.+..+++..+++ +|. .-|. .++.||+++|+|+|+.-..+- ....+ +.-.-|..++.....-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHc-cCCCCEEEEeCCcccc
Confidence 356777888888889999998 765 3344 599999999999999765311 22233 4323466664200112
Q ss_pred c----HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q 010775 435 I----RNEVEKLVREMMEGEKGKQMRNKAMEWKGLAE 467 (501)
Q Consensus 435 ~----~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~ 467 (501)
+ .++|+++|.++++++.-++|.+++++.++.+.
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence 2 78899999999965544456777776555444
No 110
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.49 E-value=0.005 Score=62.96 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=73.9
Q ss_pred ccCCeeecccChHH---hhcCCCccceEec---------cCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhccee
Q 010775 359 KEKGFVASWCPQEE---VLKHPSIGGFLTH---------CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGM 425 (501)
Q Consensus 359 ~~n~~~~~~vpq~~---lL~~~~~~~~I~H---------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~ 425 (501)
.+++.+.+|+|+.+ +|..+++ +|.- -|. .++.||+++|+|+|+....+ ....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 46788899999865 7788888 6642 344 57899999999999975533 33344 5435677
Q ss_pred eecCCCCCccHHHHHHHHHHHhc-Chh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010775 426 EINGDDEDVIRNEVEKLVREMME-GEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 488 (501)
Q Consensus 426 ~l~~~~~~~~~~~l~~ai~~vl~-~~~-~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~ 488 (501)
.++ .-+.++++++|.++++ |++ .+++.+++++. +. +.-+.+..++++.+.+.
T Consensus 351 lv~----~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~---v~----~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVP----ENDAQALAQRLAAFSQLDTDELAPVVKRAREK---VE----TDFNQQVINRELASLLQ 404 (406)
T ss_pred EeC----CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HH----HhcCHHHHHHHHHHHHh
Confidence 774 4679999999999998 775 12333333332 22 23445566666655543
No 111
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.47 E-value=0.0085 Score=60.70 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=61.4
Q ss_pred hccCCeeecccChHH---hhcCCCccceEec----cCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecC
Q 010775 358 AKEKGFVASWCPQEE---VLKHPSIGGFLTH----CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 429 (501)
Q Consensus 358 ~~~n~~~~~~vpq~~---lL~~~~~~~~I~H----GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~ 429 (501)
+..++.+.+++|+.+ +|..+++ +|.- .|. .++.||+++|+|+|+....+ +...+ +.-..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEe-
Confidence 456788899998654 6888998 7653 343 57789999999999976532 33444 4435676553
Q ss_pred CCCCccHHHHHHHHHHHhcChh
Q 010775 430 DDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 430 ~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
...+.+++.++|.++++|++
T Consensus 327 --~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPE 346 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHH
Confidence 34689999999999999886
No 112
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.47 E-value=0.0023 Score=56.71 Aligned_cols=136 Identities=16% Similarity=0.148 Sum_probs=83.3
Q ss_pred CCceEEEeecccccc-CHHH-HHHHHHHHHh-CCCCEEEEEcCCCCCCCCCCCchHHHH--HhccCCeeecccCh---HH
Q 010775 301 PKSVIYVNFGSFIFM-NKQQ-LIEVAMGLVN-SNHPFLWIIRPDLVTGETADLPAEFEV--KAKEKGFVASWCPQ---EE 372 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~-~~~~-~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~p~~~~~--~~~~n~~~~~~vpq---~~ 372 (501)
+++.+++..|..... +... ++.+.....+ .+.-.++.++...... .-....+ .+.+++.+.+++++ ..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKK----ELKNLIEKLNLKENIIFLGYVPDDELDE 88 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHH----HHHHHHHHTTCGTTEEEEESHSHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccc----cccccccccccccccccccccccccccc
Confidence 456888888887632 3333 3333333322 2233344444111000 0001111 23567888999983 34
Q ss_pred hhcCCCccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 373 VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 373 lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
++..+++ +|+. |...++.||+++|+|+|+- |...+...+ ...+.|..++. -+.+++.++|.+++.
T Consensus 89 ~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~----~~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 89 LYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP----NDIEELADAIEKLLN 157 (172)
T ss_dssp HHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST----TSHHHHHHHHHHHHH
T ss_pred cccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC----CCHHHHHHHHHHHHC
Confidence 8888898 8876 5667999999999999974 355555666 56567888854 499999999999999
Q ss_pred Chh
Q 010775 449 GEK 451 (501)
Q Consensus 449 ~~~ 451 (501)
+++
T Consensus 158 ~~~ 160 (172)
T PF00534_consen 158 DPE 160 (172)
T ss_dssp HHH
T ss_pred CHH
Confidence 875
No 113
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.42 E-value=0.028 Score=55.24 Aligned_cols=171 Identities=12% Similarity=0.039 Sum_probs=94.8
Q ss_pred CCCceEEEeeccccccCHHHHHHHHHHHHh-----CCCCEEEEEcCCCCCCCCCCCchHHHH-HhccCC-eeecccC-h-
Q 010775 300 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVN-----SNHPFLWIIRPDLVTGETADLPAEFEV-KAKEKG-FVASWCP-Q- 370 (501)
Q Consensus 300 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~p~~~~~-~~~~n~-~~~~~vp-q- 370 (501)
.+++++.+--||-..--...+..+.++... .+.+|+.-+..... ..... .+..+. ...-++. +
T Consensus 186 ~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 257 (381)
T COG0763 186 ADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY--------RRIIEEALKWEVAGLSLILIDGE 257 (381)
T ss_pred CCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH--------HHHHHHHhhccccCceEEecCch
Confidence 356799999999743222233334444332 23466655432210 01111 111121 1222222 2
Q ss_pred -HHhhcCCCccceEeccCchhHHHhhhcCCceEecCC-CCchhhhHHhhhhhhcc-----------eeeecCCCCCccHH
Q 010775 371 -EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF-TGDQPTNGRYVCNEWGV-----------GMEINGDDEDVIRN 437 (501)
Q Consensus 371 -~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~~DQ~~na~rv~~~~g~-----------G~~l~~~~~~~~~~ 437 (501)
.+++..+++ .+.-+|- -+.|+..+|+|||+.=- ..=-.+.+++.+.-.=+ ..++-. ...+++
T Consensus 258 ~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq--~~~~pe 332 (381)
T COG0763 258 KRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQ--EDCTPE 332 (381)
T ss_pred HHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHh--hhcCHH
Confidence 237777887 7766664 46799999999988421 11123344444222111 111112 678999
Q ss_pred HHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 438 EVEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 438 ~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
.|.+++.+++.|+. -+++++...++.+.++. +++++.+++-+++.+
T Consensus 333 ~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~ 379 (381)
T COG0763 333 NLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHh
Confidence 99999999999883 24677777777777773 456666666666654
No 114
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0013 Score=53.93 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=70.2
Q ss_pred EEEeeccccccCHHHHHH--HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCC-eeec--ccC-hHHhhcCCC
Q 010775 305 IYVNFGSFIFMNKQQLIE--VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKG-FVAS--WCP-QEEVLKHPS 378 (501)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~-~~~~--~vp-q~~lL~~~~ 378 (501)
||||-||....-...... +.+-.+.-..++|.+++.+.. .| -|. ++.+ +-+ -+.+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~------kp--------vagl~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI------KP--------VAGLRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc------cc--------ccccEEEeechHHHHHHHhhcce
Confidence 789999984211121111 222223334588999986532 12 122 4433 334 455777788
Q ss_pred ccceEeccCchhHHHhhhcCCceEecCCC--------CchhhhHHhhhhhhcceeeec
Q 010775 379 IGGFLTHCGWNSIVESLCSGVPMICWPFT--------GDQPTNGRYVCNEWGVGMEIN 428 (501)
Q Consensus 379 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~--------~DQ~~na~rv~~~~g~G~~l~ 428 (501)
+ +|+|+|.||+..+++-++|.+++|-. .+|-..|..+ .+.+.=+...
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kl-ae~~~vv~~s 122 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKL-AEINYVVACS 122 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHH-HhcCceEEEc
Confidence 8 99999999999999999999999953 3588889888 5556666664
No 115
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.40 E-value=0.054 Score=57.63 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=52.8
Q ss_pred CeeecccChH-HhhcCCCccceEe---ccC-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccH
Q 010775 362 GFVASWCPQE-EVLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 436 (501)
Q Consensus 362 ~~~~~~vpq~-~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~ 436 (501)
+.+.++.++. +++...++ ||. +=| -.++.||+++|+|+|+.-..+... + .. |.+..+ . -+.
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll----~-~D~ 668 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLT----Y-KTS 668 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEe----c-CCH
Confidence 5556777755 48888888 775 333 358999999999999987755321 3 32 222222 1 368
Q ss_pred HHHHHHHHHHhcChh
Q 010775 437 NEVEKLVREMMEGEK 451 (501)
Q Consensus 437 ~~l~~ai~~vl~~~~ 451 (501)
+++.++|.++|+++.
T Consensus 669 EafAeAI~~LLsd~~ 683 (794)
T PLN02501 669 EDFVAKVKEALANEP 683 (794)
T ss_pred HHHHHHHHHHHhCch
Confidence 999999999999774
No 116
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.40 E-value=0.0049 Score=63.05 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=59.7
Q ss_pred cCCeeecccChHH---hhcCCCccceEeccC----chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCC
Q 010775 360 EKGFVASWCPQEE---VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 432 (501)
Q Consensus 360 ~n~~~~~~vpq~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~ 432 (501)
+++.+.+|+++.+ ++..+++.++|...- -.+++||+++|+|+|+-... .....+ +..+.|..+. .
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i-~~~~~G~l~~---~ 360 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIV-DNGGNGLLLS---K 360 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHh-cCCCcEEEeC---C
Confidence 4577899999765 555444433775442 35899999999999985543 345555 5534787775 3
Q ss_pred CccHHHHHHHHHHHhcChh
Q 010775 433 DVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 433 ~~~~~~l~~ai~~vl~~~~ 451 (501)
.-+.+++.++|.++++|++
T Consensus 361 ~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 361 DPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred CCCHHHHHHHHHHHHhCHH
Confidence 4688999999999998765
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.35 E-value=0.033 Score=55.97 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=67.5
Q ss_pred ccCCeeecccChH-HhhcCCCccceEec--cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCcc
Q 010775 359 KEKGFVASWCPQE-EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI 435 (501)
Q Consensus 359 ~~n~~~~~~vpq~-~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~ 435 (501)
++++.+.++.++. .++..+++-.+.++ |...++.||+++|+|+|+.....- ....+ +.-..|..+ ..-+
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v-~~~~~G~lv----~~~d 331 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEII-EDGENGYLV----PKGD 331 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHc-ccCCCceEe----CCCc
Confidence 4567777777654 58889998444444 234589999999999998654321 23334 444577777 4568
Q ss_pred HHHHHHHHHHHhcChh-hHHHHHHHHHHHHHH
Q 010775 436 RNEVEKLVREMMEGEK-GKQMRNKAMEWKGLA 466 (501)
Q Consensus 436 ~~~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~ 466 (501)
.++++++|.+++.|++ -+++.+++++.++.+
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999874 234556665554443
No 118
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.35 E-value=0.14 Score=53.53 Aligned_cols=82 Identities=9% Similarity=0.161 Sum_probs=59.6
Q ss_pred ccCCeeecccChHHhhcCCCccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhh------cceeeec
Q 010775 359 KEKGFVASWCPQEEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEW------GVGMEIN 428 (501)
Q Consensus 359 ~~n~~~~~~vpq~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~------g~G~~l~ 428 (501)
.+|+.+.+...-.++|..+++ +|.- |--.++.||+++|+|+|+-.. ......+ +.. ..|..+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv- 424 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVV- 424 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEE-
Confidence 467888886666778888888 6643 234689999999999999533 3344444 431 267777
Q ss_pred CCCCCccHHHHHHHHHHHhcChh
Q 010775 429 GDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 429 ~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
..-+.++++++|.++++|++
T Consensus 425 ---~~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 425 ---PPADPEALARAILRLLKDPE 444 (475)
T ss_pred ---CCCCHHHHHHHHHHHhcCHH
Confidence 45789999999999999875
No 119
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.30 E-value=0.0073 Score=61.60 Aligned_cols=139 Identities=18% Similarity=0.251 Sum_probs=77.1
Q ss_pred CCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh------ccCCeeecccChHH-
Q 010775 300 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA------KEKGFVASWCPQEE- 372 (501)
Q Consensus 300 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~------~~n~~~~~~vpq~~- 372 (501)
+++.++|.+|.......++.+..-.+-|++.+.-.+|..+.... + ...+..+. ++++.+.++.++.+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~-----~~~l~~~~~~~Gv~~~Ri~f~~~~~~~eh 355 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-G-----EARLRRRFAAHGVDPDRIIFSPVAPREEH 355 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-H-----HHHHHHHHHHTTS-GGGEEEEE---HHHH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-H-----HHHHHHHHHHcCCChhhEEEcCCCCHHHH
Confidence 34579999999999999999999999999999999998764321 0 11222111 35677777777655
Q ss_pred --hhcCCCccceE---eccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHh
Q 010775 373 --VLKHPSIGGFL---THCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 447 (501)
Q Consensus 373 --lL~~~~~~~~I---~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl 447 (501)
.+...++ ++ ..+|..|++|||+.|||+|.+|--.=.-..+.-+-..+|+.-.+. .+.++-.+.--++-
T Consensus 356 l~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA-----~s~~eYv~~Av~La 428 (468)
T PF13844_consen 356 LRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA-----DSEEEYVEIAVRLA 428 (468)
T ss_dssp HHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB------SSHHHHHHHHHHHH
T ss_pred HHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC-----CCHHHHHHHHHHHh
Confidence 3445666 54 467889999999999999999943322233333325567765542 34455333333455
Q ss_pred cChh
Q 010775 448 EGEK 451 (501)
Q Consensus 448 ~~~~ 451 (501)
.|.+
T Consensus 429 ~D~~ 432 (468)
T PF13844_consen 429 TDPE 432 (468)
T ss_dssp H-HH
T ss_pred CCHH
Confidence 5654
No 120
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.10 E-value=0.0036 Score=62.21 Aligned_cols=110 Identities=16% Similarity=0.311 Sum_probs=78.5
Q ss_pred ccCCeeecccChHHh---hcCCCccceEecc-------Cc------hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhc
Q 010775 359 KEKGFVASWCPQEEV---LKHPSIGGFLTHC-------GW------NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWG 422 (501)
Q Consensus 359 ~~n~~~~~~vpq~~l---L~~~~~~~~I~HG-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g 422 (501)
.+|+.+.+|+|+.++ |.. +.+++...- .+ +-+.+.+++|+|+|+. ++...+..| ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 568999999998875 433 433332211 11 1267789999999985 456677777 7889
Q ss_pred ceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010775 423 VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 485 (501)
Q Consensus 423 ~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~ 485 (501)
+|+.+ . +.+++.+++..+. +++.++|++|++++++.+++ |.-...++++++.
T Consensus 280 ~G~~v----~--~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVV----D--SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEe----C--CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 99998 4 4578999998754 44456799999999999995 6666666666654
No 121
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.78 E-value=0.78 Score=46.96 Aligned_cols=180 Identities=10% Similarity=0.168 Sum_probs=104.0
Q ss_pred hccccCCCCCceEEEeeccccc----------cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC-CCCCC--chHHHHHhc
Q 010775 293 LQWLDCKEPKSVIYVNFGSFIF----------MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTG-ETADL--PAEFEVKAK 359 (501)
Q Consensus 293 ~~~l~~~~~~~~V~vs~Gs~~~----------~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~-~~~~~--p~~~~~~~~ 359 (501)
..|+...+.+++|-++.-.... ...+.+..+++.+...+.++++..--..... ...+. ...+.+.++
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 3455432334577777543321 1123344555666566888876643211100 00001 112223332
Q ss_pred --cCCee-e-cccChH--HhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceee-ecCCCC
Q 010775 360 --EKGFV-A-SWCPQE--EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME-INGDDE 432 (501)
Q Consensus 360 --~n~~~-~-~~vpq~--~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~-l~~~~~ 432 (501)
+++.+ . .+-+.+ .++.++++ +|..= +-+..-|+..|||++.+++ |+ -....+ +.+|.... .+. .
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~-K~~~~~-~~lg~~~~~~~~--~ 375 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EH-KSAGIM-QQLGLPEMAIDI--R 375 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hH-HHHHHH-HHcCCccEEech--h
Confidence 22333 2 233433 68888887 88532 3457788999999999999 33 333334 66787755 566 7
Q ss_pred CccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010775 433 DVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 489 (501)
Q Consensus 433 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~ 489 (501)
+++.++|.+.+.+++++.+ +++++.++-.+.++. ...+...++|+.|.+
T Consensus 376 ~l~~~~Li~~v~~~~~~r~--~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQLP--ALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred hCCHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 8999999999999999865 466666665555553 234667777776655
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.64 E-value=0.35 Score=44.05 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=36.6
Q ss_pred ccCCeeecccChH---H-hhcCCCccceEeccC----chhHHHhhhcCCceEecCCCCch
Q 010775 359 KEKGFVASWCPQE---E-VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQ 410 (501)
Q Consensus 359 ~~n~~~~~~vpq~---~-lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ 410 (501)
.+|+.+.+++++. . ++..+++ +|+-.. .+++.||+++|+|+|+.+..+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 4577888886322 2 4444787 887775 68999999999999998876544
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.49 E-value=0.011 Score=49.84 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=66.1
Q ss_pred eEEEeeccccc-cCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChH-HhhcCCCcc
Q 010775 304 VIYVNFGSFIF-MNKQQLIE-VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE-EVLKHPSIG 380 (501)
Q Consensus 304 ~V~vs~Gs~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~-~lL~~~~~~ 380 (501)
++++++|+... ...+.+-. +++.+.+...++-+.+-+.. |+.+.....+|+.+.+|++.. +++..+++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~--------~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~ 74 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG--------PDELKRLRRPNVRFHGFVEELPEILAAADVG 74 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES--------S-HHCCHHHCTEEEE-S-HHHHHHHHC-SEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC--------HHHHHHhcCCCEEEcCCHHHHHHHHHhCCEE
Confidence 45666666642 23343333 55555443334544443221 112111125589999999743 488899985
Q ss_pred ceEec--cC-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 381 GFLTH--CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 381 ~~I~H--GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
...+. .| -+++.|++++|+|+|+.+. . ....+ +..+.|..+ . -+++++.++|.++++|
T Consensus 75 l~p~~~~~~~~~k~~e~~~~G~pvi~~~~----~-~~~~~-~~~~~~~~~-~----~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 75 LIPSRFNEGFPNKLLEAMAAGKPVIASDN----G-AEGIV-EEDGCGVLV-A----NDPEELAEAIERLLND 135 (135)
T ss_dssp EE-BSS-SCC-HHHHHHHCTT--EEEEHH----H-CHCHS----SEEEE--T----T-HHHHHHHHHHHHH-
T ss_pred EEEeeCCCcCcHHHHHHHHhCCCEEECCc----c-hhhhe-eecCCeEEE-C----CCHHHHHHHHHHHhcC
Confidence 55442 23 4899999999999999766 1 22223 435777666 2 3899999999999875
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.45 E-value=0.055 Score=45.86 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=65.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHH
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAY 91 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 91 (501)
|||++......| ...+++.|.++||+|++++.....+.... ..++.+..++.. .. ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~~i~~~~~~~~--~k--------~~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---------IEGIKVIRLPSP--RK--------SPL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---------hCCeEEEEecCC--CC--------ccH
Confidence 577777666665 56789999999999999998554332221 236777777421 10 011
Q ss_pred HHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc---hHHHHHHHcC-CCeEEEecc
Q 010775 92 SLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP---FTITAAQQLG-LPIVLFFTI 153 (501)
Q Consensus 92 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~---~~~~~A~~lg-iP~v~~~~~ 153 (501)
.++. + . .+.+++++. +||+|.+-.... .+..++...| +|.+.....
T Consensus 59 ~~~~-----~-~-~l~k~ik~~---------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 59 NYIK-----Y-F-RLRKIIKKE---------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred HHHH-----H-H-HHHHHhccC---------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 1221 1 1 344555553 899998776554 2455678888 999876443
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.43 E-value=1.3 Score=45.18 Aligned_cols=115 Identities=9% Similarity=0.004 Sum_probs=66.3
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHHHHHhccCCeeecccC-h---HHhhcCCC
Q 010775 304 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP-Q---EEVLKHPS 378 (501)
Q Consensus 304 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vp-q---~~lL~~~~ 378 (501)
.+++..|............+++++...+.++ ++.+|.... . ...++...++.. + .+++..++
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~--------~-----~~~~v~~~g~~~~~~~l~~~y~~aD 308 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP--------F-----TAGNVVNHGFETDKRKLMSALNQMD 308 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc--------c-----cccceEEecCcCCHHHHHHHHHhCC
Confidence 4445555532222233466788887765544 444553211 0 023455555543 2 33566677
Q ss_pred ccceEec----cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHH
Q 010775 379 IGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLV 443 (501)
Q Consensus 379 ~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai 443 (501)
+ ||.- |--.++.||+++|+|+|+....+ ....+ .. +.|..++ .-+.++|++++
T Consensus 309 v--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~----~~d~~~La~~~ 365 (405)
T PRK10125 309 A--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVS----EEEVLQLAQLS 365 (405)
T ss_pred E--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEEC----CCCHHHHHhcc
Confidence 7 7753 22358999999999999988765 22223 43 5688775 35778888754
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.17 E-value=1.3 Score=42.44 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCc-chHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHH-HHHHH
Q 010775 19 PFQSHIKAMLKLAKLLHHKGFHITFVNTEF-NHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAY-SLGEN 96 (501)
Q Consensus 19 ~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~-~~~~~ 96 (501)
+-.-|+.-+..|-++|.++||+|.+-+-+. ....+..+ .|+.+..+.. .....+. .+...
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~---------ygf~~~~Igk---------~g~~tl~~Kl~~~ 69 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL---------YGFPYKSIGK---------HGGVTLKEKLLES 69 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH---------hCCCeEeecc---------cCCccHHHHHHHH
Confidence 455688889999999999999998765432 22223232 3677777662 2222233 34444
Q ss_pred HHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 010775 97 IINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 97 ~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (501)
..+.. .+.+++.+. +||+.+. -..+.+.-+|.-+|+|.+.+.-.
T Consensus 70 ~eR~~---~L~ki~~~~---------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 70 AERVY---KLSKIIAEF---------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHH---HHHHHHhhc---------CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 44444 666777664 8999999 56778999999999999998544
No 127
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.55 E-value=0.068 Score=55.16 Aligned_cols=120 Identities=22% Similarity=0.298 Sum_probs=79.1
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh------ccCCeeecccChHH--
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA------KEKGFVASWCPQEE-- 372 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~------~~n~~~~~~vpq~~-- 372 (501)
++.+||.+|-.....+++.+..-.+-|++.+.-++|..+...... ..|..-+ |+++++.+-+...+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 456999999888889999999999999999999999998544311 1222111 34555544443332
Q ss_pred ---hhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeee
Q 010775 373 ---VLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEI 427 (501)
Q Consensus 373 ---lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l 427 (501)
.|..-.+.-+.+ .|.-|.++.|+.|||||.+|.-.---..|.-+....|+|.-+
T Consensus 831 rr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli 887 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI 887 (966)
T ss_pred HhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH
Confidence 222222222444 457799999999999999998554444444433567888755
No 128
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.50 E-value=0.16 Score=39.64 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=56.9
Q ss_pred ccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhc-ceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 010775 385 HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWG-VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWK 463 (501)
Q Consensus 385 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g-~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~ 463 (501)
+|-...+.|++++|+|+|.-.. ......+ +. | -++.. . +.+++.++|..+++|+. ..++-+++-.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~----~--~~~el~~~i~~ll~~~~--~~~~ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY----N--DPEELAEKIEYLLENPE--ERRRIAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE----C--CHHHHHHHHHHHHCCHH--HHHHHHHHHH
Confidence 5556789999999999998765 3333333 22 3 23333 3 89999999999999886 3555555555
Q ss_pred HHHHHHhCCCCChHHHHHHHHH
Q 010775 464 GLAEEAAAPHGSSSLNLDKLVN 485 (501)
Q Consensus 464 ~~~~~~~~~gg~~~~~~~~li~ 485 (501)
+.+++ ..+..+.++++++
T Consensus 75 ~~v~~----~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLK----RHTWEHRAEQILE 92 (92)
T ss_pred HHHHH----hCCHHHHHHHHHC
Confidence 55554 5777777777763
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.19 Score=51.73 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh------ccCCeeecccCh---
Q 010775 300 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA------KEKGFVASWCPQ--- 370 (501)
Q Consensus 300 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~------~~n~~~~~~vpq--- 370 (501)
+++.+||+||+-.....++.+..=.+-++..+.-++|..+++..+. ....+++.. ++++++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~----~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE----INARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH----HHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 3567999999999999999999988889999999999988642211 111111111 245666666553
Q ss_pred HHhhcCCCccceEe---ccCchhHHHhhhcCCceEecCCCCchhh--hHHhhhhhhcceeeecCCCCCccHHHHHHHHH
Q 010775 371 EEVLKHPSIGGFLT---HCGWNSIVESLCSGVPMICWPFTGDQPT--NGRYVCNEWGVGMEINGDDEDVIRNEVEKLVR 444 (501)
Q Consensus 371 ~~lL~~~~~~~~I~---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~ 444 (501)
.+=+..+++ |+. -||.-|..|+|..|||||..+ ++||- |+.-++..+|+-..+ ..-.++=++.+|+
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v----A~s~~dYV~~av~ 573 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV----ADSRADYVEKAVA 573 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh----cCCHHHHHHHHHH
Confidence 445566777 775 599999999999999998865 67764 555554555665444 2333444666664
No 130
>PRK14098 glycogen synthase; Provisional
Probab=95.37 E-value=0.37 Score=50.53 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=75.8
Q ss_pred CceEEEeecccccc-CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChH---HhhcCC
Q 010775 302 KSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE---EVLKHP 377 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~---~lL~~~ 377 (501)
+.++++..|..... +.+.+...+..+...+.+++. ++.+.. ...+.+ ..+..+.++++.+..+++.. .+++.+
T Consensus 306 ~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvi-vG~G~~-~~~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~a~a 382 (489)
T PRK14098 306 ETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVI-CGSGDK-EYEKRF-QDFAEEHPEQVSVQTEFTDAFFHLAIAGL 382 (489)
T ss_pred CCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEE-EeCCCH-HHHHHH-HHHHHHCCCCEEEEEecCHHHHHHHHHhC
Confidence 34566666776532 233333333333333444444 343210 000001 12223446678888888764 588888
Q ss_pred CccceEecc---Cc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 378 SIGGFLTHC---GW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 378 ~~~~~I~HG---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
++ ++.-. |. .+.+||+++|+|.|+....+-........ +.-+.|..+ ..-++++|.++|.++++
T Consensus 383 Di--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~----~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 383 DM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIF----HDYTPEALVAKLGEALA 450 (489)
T ss_pred CE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEe----CCCCHHHHHHHHHHHHH
Confidence 88 77532 33 37789999999988876543211111111 223667777 45679999999998763
No 131
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.35 E-value=1.9 Score=42.38 Aligned_cols=130 Identities=10% Similarity=0.013 Sum_probs=74.6
Q ss_pred CCceEEEeecccc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecc--cCh-HHhh
Q 010775 301 PKSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW--CPQ-EEVL 374 (501)
Q Consensus 301 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~--vpq-~~lL 374 (501)
+++.|.+..|+.. ..+.+.+.++++.+.+.+.++++..++..... ......+..+ +..+.+- ++| .+++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~----~~~~i~~~~~-~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQ----RAERIAEALP-GAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHH----HHHHHHhhCC-CCeecCCCCHHHHHHHH
Confidence 3456666666532 45677888888888766777766544221000 1111222222 2233333 333 3588
Q ss_pred cCCCccceEeccCchhHHHhhhcCCceEec--CCCCch--hh--hHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHh
Q 010775 375 KHPSIGGFLTHCGWNSIVESLCSGVPMICW--PFTGDQ--PT--NGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 447 (501)
Q Consensus 375 ~~~~~~~~I~HGG~gs~~eal~~GvP~v~~--P~~~DQ--~~--na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl 447 (501)
.++++ +|+.= .|.+|=|.+.|+|+|++ |....+ |. +...+ . +. .. +.++++++.+++.++|
T Consensus 253 ~~a~l--~I~~D-Sgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~-~----~~--~~--~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGVD-TGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVAL-L----GE--SG--ANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeCC-ChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEE-c----cC--cc--CCCCHHHHHHHHHhhC
Confidence 89998 98754 58999999999999985 211111 11 11111 1 11 13 7899999999998765
No 132
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.34 E-value=0.02 Score=45.26 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=44.9
Q ss_pred hhhhhccccCCCCCceEEEeecccccc---CH--HHHHHHHHHHHhCCCCEEEEEcCCCC
Q 010775 289 ETECLQWLDCKEPKSVIYVNFGSFIFM---NK--QQLIEVAMGLVNSNHPFLWIIRPDLV 343 (501)
Q Consensus 289 ~~~l~~~l~~~~~~~~V~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~ 343 (501)
...+.+|+...+.++.|++|+||.... .. ..+..+++++...+..+|.++.....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 345777999888899999999999743 22 47888999999999999999986543
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=95.27 E-value=0.89 Score=44.92 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=57.0
Q ss_pred hccCCeee---cccChH---HhhcCCCccceEec---cCc-hhHHHhhhcCCceEecCC------CCch------hhhHH
Q 010775 358 AKEKGFVA---SWCPQE---EVLKHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPF------TGDQ------PTNGR 415 (501)
Q Consensus 358 ~~~n~~~~---~~vpq~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~ 415 (501)
+++++.+. +++++. +++..+++ ||.- =|. .++.||+++|+|+|+--. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45677776 555654 57888888 7753 344 478999999999998533 3333 22222
Q ss_pred hhhh-hhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 416 YVCN-EWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 416 rv~~-~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
..+. ..|.|..+ ...++++++++|.+++..
T Consensus 277 ~~~~~~~g~g~~~----~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEHGQKWKI----HKFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCcccCceeee----cCCCHHHHHHHHHHHHhc
Confidence 2211 23666666 568999999999998554
No 134
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.92 E-value=1.1 Score=47.10 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=50.3
Q ss_pred ccCCeeecccChH-HhhcCCCccceEe---ccC-chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 359 KEKGFVASWCPQE-EVLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 359 ~~n~~~~~~vpq~-~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
.+++.+.+|.... .+|..+++ ||. .-| -+++.||+++|+|+|+.... .+...+ ..-..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEECC----
Confidence 4678888886543 48889998 875 345 45999999999999987653 344444 44456877753
Q ss_pred ccHHHHHHHH
Q 010775 434 VIRNEVEKLV 443 (501)
Q Consensus 434 ~~~~~l~~ai 443 (501)
-+.+.+.+++
T Consensus 523 ~D~~aLa~ai 532 (578)
T PRK15490 523 AQTVNLDQAC 532 (578)
T ss_pred CChhhHHHHH
Confidence 3445555544
No 135
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.59 E-value=3.1 Score=41.38 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=68.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhhhhCCCCCCCCCCee-EEeCCCCCCCCCCCCCCcc
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFR-FEAIPDGLPASSDESPTAQ 88 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~~~ 88 (501)
|||++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.++ +..++... ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~vd~vi~~~~~~--------~~~ 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN---------PDINALYGLDRKK--------AKA 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC---------CCccEEEEeChhh--------hcc
Confidence 58899989999999999999999987 8999999998887765432 2332 23333110 000
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010775 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~ 150 (501)
. ...+. ..-+++..++.. +||++|.=.....+..++...|.|.-+-
T Consensus 64 ~----~~~~~------~~~~l~~~lr~~------~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 64 G----ERKLA------NQFHLIKVLRAN------RYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred h----HHHHH------HHHHHHHHHHhC------CCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 0 00111 111334445443 9999996544445777888889987553
No 136
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.42 E-value=0.12 Score=44.36 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcch
Q 010775 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLH 104 (501)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (501)
.-+..|+++|.++||+|+++++......-+ ....++.+..++ ++.. ..... .+. + ..
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~---~~~~~----~~~-----~-~~ 61 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE--------EEEDGVRVHRLP--LPRR---PWPLR----LLR-----F-LR 61 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S--------EEETTEEEEEE----S-S---SSGGG----HCC-----H-HH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc--------cccCCceEEecc--CCcc---chhhh----hHH-----H-HH
Confidence 347889999999999999999755444211 112367777766 2211 00000 001 1 12
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-hHHHHHH-HcCCCeEEEec
Q 010775 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLP-FTITAAQ-QLGLPIVLFFT 152 (501)
Q Consensus 105 ~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~-~~~~~A~-~lgiP~v~~~~ 152 (501)
.+.+++ .... .+||+|.+..... ....+++ ..++|+|....
T Consensus 62 ~~~~~l-~~~~------~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 62 RLRRLL-AARR------ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHC-HHCT---------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHH-hhhc------cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 233333 1122 3999999887432 2333444 88999998754
No 137
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.11 E-value=6.6 Score=39.16 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=68.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhhhhCCCCCCCCCCee-EEeCCCCCCCCCCCCCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFR-FEAIPDGLPASSDESPT 86 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~ 86 (501)
.+|||++-....|++.-...+.+.|+++ +.+|++++.+.+.+.++.. +.++ +..++.. ..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~id~vi~~~~~--~~------ 67 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN---------PEINALYGIKNK--KA------ 67 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC---------CCceEEEEeccc--cc------
Confidence 4689999999999999999999999988 8999999998877765432 2332 2222210 00
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010775 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~ 150 (501)
.. ...+ ..+.+++..++.. +||++|.=........++...|.|..+-
T Consensus 68 --~~---~~~~------~~~~~l~~~lr~~------~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 68 --GA---SEKI------KNFFSLIKVLRAN------KYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred --cH---HHHH------HHHHHHHHHHhhC------CCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 00 0001 0122344555543 9999996543434556677778777553
No 138
>PHA01630 putative group 1 glycosyl transferase
Probab=92.70 E-value=7.2 Score=38.59 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=61.8
Q ss_pred cccChHH---hhcCCCccceEe---ccC-chhHHHhhhcCCceEecCCCC--chh---hhHHhhhhh-----------hc
Q 010775 366 SWCPQEE---VLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTG--DQP---TNGRYVCNE-----------WG 422 (501)
Q Consensus 366 ~~vpq~~---lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~rv~~~-----------~g 422 (501)
.++|+.+ ++..+++ +|. ..| -.++.||+++|+|+|+.-..+ |.- .|+..+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3466554 6888888 653 333 358999999999999976543 321 122111 11 13
Q ss_pred ceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 423 VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 423 ~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
+|..++ .+.+++.+++.+++.|.+-+.++++..+-+....+ .-+-+..++++.+-+
T Consensus 273 ~G~~v~-----~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~ 328 (331)
T PHA01630 273 VGYFLD-----PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKIL 328 (331)
T ss_pred cccccC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 455442 36777888888888763111255444444443333 355555555555544
No 139
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.08 E-value=1.8 Score=38.13 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=53.3
Q ss_pred hCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhc
Q 010775 36 HKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHPFLDLLAKLND 115 (501)
Q Consensus 36 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~ 115 (501)
++||+|++++........ +|++...+...-... ....-...-++...... ..+.+.+..|++
T Consensus 1 q~gh~v~fl~~~~~~~~~------------~GV~~~~y~~~~~~~----~~~~~~~~~~e~~~~rg--~av~~a~~~L~~ 62 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------------PGVRVVRYRPPRGPT----PGTHPYVRDFEAAVLRG--QAVARAARQLRA 62 (171)
T ss_pred CCCCEEEEEecCCCCCCC------------CCcEEEEeCCCCCCC----CCCCcccccHHHHHHHH--HHHHHHHHHHHH
Confidence 479999999965444311 367777765311111 11111111122222221 133344445554
Q ss_pred CCCCCCCCeeEEEEcCCcchHHHHHHHc-CCCeEEEe
Q 010775 116 SSNSVNPAVSCIISDGFLPFTITAAQQL-GLPIVLFF 151 (501)
Q Consensus 116 ~~~~~~~~~DlVi~D~~~~~~~~~A~~l-giP~v~~~ 151 (501)
+ +..||+|+...-...++-+-..+ ++|.+.++
T Consensus 63 ~----Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 63 Q----GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred c----CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 4 56789999998777788888889 89998873
No 140
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.42 E-value=2 Score=37.26 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=24.0
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
..|=-.-+..|+++|+++||+|+++++....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3466678999999999999999999875433
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.67 E-value=3.9 Score=42.38 Aligned_cols=103 Identities=10% Similarity=0.113 Sum_probs=70.5
Q ss_pred cccChHH---hhcCCCccceEe---ccCch-hHHHhhhcCCc----eEecCCCCchhhhHHhhhhhhcceeeecCCCCCc
Q 010775 366 SWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVP----MICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 434 (501)
Q Consensus 366 ~~vpq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~ 434 (501)
..+++.+ ++..+++ ++. +=|+| +..|++++|+| +|+--..+-- ..+ +-|+.+ +..
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l----~~gllV----nP~ 407 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL----NGALLV----NPY 407 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh----CCcEEE----CCC
Confidence 4556655 5777888 775 44654 88899999999 6655544322 222 346666 457
Q ss_pred cHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010775 435 IRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 488 (501)
Q Consensus 435 ~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~ 488 (501)
+.++++++|.++|+.+. ++.+++.+++.+.+.. .+...-+++++++|.
T Consensus 408 d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 DIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 89999999999998542 1356666666676663 677888888888763
No 142
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.30 E-value=24 Score=34.80 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=38.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~ 55 (501)
|||++-..+.|++.-...+.+.|++. +.+|+|++.+.+.+.++.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER 46 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc
Confidence 58999999999999999999999987 999999998777665543
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.05 E-value=2.1 Score=37.77 Aligned_cols=116 Identities=18% Similarity=0.132 Sum_probs=61.0
Q ss_pred EEcCCCccCHHHHHHHHHHH-HhC-CCEEEEEeCCcchH--HHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccH
Q 010775 15 CIPSPFQSHIKAMLKLAKLL-HHK-GFHITFVNTEFNHR--RLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDA 90 (501)
Q Consensus 15 ~~~~~~~GH~~p~l~La~~L-~~r-GH~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 90 (501)
++..++.||+.=++.|.+.+ .++ .++..+++...... .+.+.... ......+..+|.-.... ....
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~----~~~~~~~~~~~r~r~v~------q~~~ 71 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS----SSKRHKILEIPRAREVG------QSYL 71 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh----ccccceeeccceEEEec------hhhH
Confidence 34458899999999999999 344 56666666544322 22211110 00011344444211111 0001
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHc------CCCeEEEec
Q 010775 91 YSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQL------GLPIVLFFT 152 (501)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~--~~~~~A~~l------giP~v~~~~ 152 (501)
...+..+ ... ...+.-+.+. +||+||+..... ..+.+|..+ |.++|.+-+
T Consensus 72 ~~~~~~l-~~~-~~~~~il~r~----------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 72 TSIFTTL-RAF-LQSLRILRRE----------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhHHHHH-HHH-HHHHHHHHHh----------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 1112222 111 1222333322 999999998666 467788888 999999844
No 144
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.50 E-value=5.2 Score=32.79 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
||++.+.++..|.....-++..|.++|++|+++...-..+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 578899999999999999999999999999998865444333
No 145
>PLN02939 transferase, transferring glycosyl groups
Probab=88.41 E-value=16 Score=41.02 Aligned_cols=83 Identities=8% Similarity=0.025 Sum_probs=54.8
Q ss_pred cCCeeecccChH---HhhcCCCccceEec---cCc-hhHHHhhhcCCceEecCCCC--chhhh--HHhhhhhhcceeeec
Q 010775 360 EKGFVASWCPQE---EVLKHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPFTG--DQPTN--GRYVCNEWGVGMEIN 428 (501)
Q Consensus 360 ~n~~~~~~vpq~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~n--a~rv~~~~g~G~~l~ 428 (501)
++|.+..+.+.. .+++.+++ ||.- =|. .+++||+++|+|.|+....+ |.-.. ...+.+.-+-|..++
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777777764 48888888 8853 233 48999999999999876644 22111 111111225677774
Q ss_pred CCCCCccHHHHHHHHHHHhc
Q 010775 429 GDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 429 ~~~~~~~~~~l~~ai~~vl~ 448 (501)
.-++++|..+|.+++.
T Consensus 915 ----~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 ----TPDEQGLNSALERAFN 930 (977)
T ss_pred ----CCCHHHHHHHHHHHHH
Confidence 4688999999988775
No 146
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=87.79 E-value=6.3 Score=37.20 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
++||||+..=-+. |---+.+|+++|.+.| +|+++.|...+.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 5789887663332 2245788999998888 799999877665
No 147
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=87.01 E-value=32 Score=33.66 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=38.8
Q ss_pred ChHHhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhh---HHhhhhhhcceeeecC
Q 010775 369 PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN---GRYVCNEWGVGMEING 429 (501)
Q Consensus 369 pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n---a~rv~~~~g~G~~l~~ 429 (501)
|+...|..++. .|||=-..+=+.||+..|+|+.++|+-.-.... .+.+ ++.|+-..+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L-~~~g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL-EERGAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH-HHCCCEEECCC
Confidence 56778888886 344555567789999999999999987621222 2233 33466555543
No 148
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.87 E-value=3.5 Score=42.89 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=64.2
Q ss_pred ecccChHH---hhcCCCccceEe---ccCch-hHHHhhhcCCc----eEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 365 ASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVP----MICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 365 ~~~vpq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
.+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|+--..+ -. +...-|+.+ +.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~-------~~~~~g~lv----~p 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AA-------EELSGALLV----NP 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-ch-------hhcCCCEEE----CC
Confidence 46777765 6778888 763 44654 77999999999 44432222 11 111235666 44
Q ss_pred ccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010775 434 VIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 487 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~ 487 (501)
-+.++++++|.++++++.. ..+.+.++..+.+.+ -+...-+++++.+|
T Consensus 412 ~d~~~la~ai~~~l~~~~~-e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 412 YDIDEVADAIHRALTMPLE-ERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 6889999999999986531 133344444444443 66677777777665
No 149
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.61 E-value=2 Score=40.92 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=56.6
Q ss_pred cCCee-ecccChHHhhcCCCccceEeccCchhHH-HhhhcCCceEecCCCCchhhh--HHhhhhhhcceeeecCCCCCcc
Q 010775 360 EKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIV-ESLCSGVPMICWPFTGDQPTN--GRYVCNEWGVGMEINGDDEDVI 435 (501)
Q Consensus 360 ~n~~~-~~~vpq~~lL~~~~~~~~I~HGG~gs~~-eal~~GvP~v~~P~~~DQ~~n--a~rv~~~~g~G~~l~~~~~~~~ 435 (501)
+|..+ ..|-.+.++|.+.++ .|--. ||-. +++--|||+|.+|-.+-|+.- |.|=.+-+|+.+.+- ...
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv----~~~ 365 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV----RPE 365 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec----CCc
Confidence 35543 455556667766666 44333 4444 457789999999999999874 444322256666653 333
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHH
Q 010775 436 RNEVEKLVREMMEGEKGKQMRNKAMEW 462 (501)
Q Consensus 436 ~~~l~~ai~~vl~~~~~~~~r~~a~~~ 462 (501)
+..-..+.++++.|++ +-..+++=
T Consensus 366 aq~a~~~~q~ll~dp~---r~~air~n 389 (412)
T COG4370 366 AQAAAQAVQELLGDPQ---RLTAIRHN 389 (412)
T ss_pred hhhHHHHHHHHhcChH---HHHHHHhc
Confidence 4444445566999987 66666633
No 150
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=86.41 E-value=14 Score=37.99 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=86.5
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHH--HHhccCCee-ecccC-h-HHhh
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFE--VKAKEKGFV-ASWCP-Q-EEVL 374 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~p~~~~--~~~~~n~~~-~~~vp-q-~~lL 374 (501)
....+++| +...++.+....++.+. .|=...++. ..+.+. ++. +|+.+ .++.+ . .+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--------~s~kL~~L~~y-~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--------MSSKLMSLDKY-DNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--------ccHHHHHHHhc-CCcEEECCcChHHHHHHH
Confidence 34577776 25666666666666654 332233322 112221 233 56654 67777 3 4699
Q ss_pred cCCCccceEeccC--chhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhh
Q 010775 375 KHPSIGGFLTHCG--WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG 452 (501)
Q Consensus 375 ~~~~~~~~I~HGG--~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~ 452 (501)
..+++.+-|+||. ..++.||+.+|+|++..=...... ..+ .. |... ..-+.+++.++|.++|.+++
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~----~~~~~~~m~~~i~~lL~d~~- 413 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIF----EHNEVDQLISKLKDLLNDPN- 413 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Ccee----cCCCHHHHHHHHHHHhcCHH-
Confidence 9999999999987 469999999999999876543322 222 22 4444 34568999999999999986
Q ss_pred HHHHHHHHHHHHH
Q 010775 453 KQMRNKAMEWKGL 465 (501)
Q Consensus 453 ~~~r~~a~~~~~~ 465 (501)
.++++..+-++-
T Consensus 414 -~~~~~~~~q~~~ 425 (438)
T TIGR02919 414 -QFRELLEQQREH 425 (438)
T ss_pred -HHHHHHHHHHHH
Confidence 255555544443
No 151
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.90 E-value=2.3 Score=36.06 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
++.+|++.+.++.+|..-..-++..|.++|++|++++..-..+.+.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 467999999999999999999999999999999999977555544443
No 152
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=85.13 E-value=36 Score=32.48 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=38.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~ 55 (501)
|||++-..+.|++.-+..+.++|+++ +-+|++++.+.+.+.++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 58899999999999999999999997 489999999877776554
No 153
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=84.78 E-value=13 Score=35.01 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
||||+..=-+. |---+.+|+++|++ +|+|+++.|...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 46665542222 22237888999965 68999999977665
No 154
>PRK14099 glycogen synthase; Provisional
Probab=84.61 E-value=19 Score=37.79 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=49.3
Q ss_pred ccCC-eeecccChHH-hh-cCCCccceEe---ccCch-hHHHhhhcCCceEecCCCC--chhhhHHhhhhh--hcceeee
Q 010775 359 KEKG-FVASWCPQEE-VL-KHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTG--DQPTNGRYVCNE--WGVGMEI 427 (501)
Q Consensus 359 ~~n~-~~~~~vpq~~-lL-~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~--~g~G~~l 427 (501)
++++ .+.+|-.... ++ ..+++ ||. +=|.| +.+||+++|+|.|+....+ |.-.......+. -+.|..+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4454 3566633322 33 35777 774 44544 7789999998777654422 321111111010 1467777
Q ss_pred cCCCCCccHHHHHHHHHH---HhcChh
Q 010775 428 NGDDEDVIRNEVEKLVRE---MMEGEK 451 (501)
Q Consensus 428 ~~~~~~~~~~~l~~ai~~---vl~~~~ 451 (501)
+ .-++++|.++|.+ +++|++
T Consensus 427 ~----~~d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 427 S----PVTADALAAALRKTAALFADPV 449 (485)
T ss_pred C----CCCHHHHHHHHHHHHHHhcCHH
Confidence 4 4689999999987 555654
No 155
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=84.24 E-value=1.6 Score=35.99 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=27.4
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 11 VHAVCIPSPFQS---HIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 11 ~~il~~~~~~~G---H~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
|||+|+.-|-.+ .-...++|+.+-++|||+|.++++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 688888877554 345688999999999999999987653
No 156
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.03 E-value=51 Score=32.57 Aligned_cols=105 Identities=19% Similarity=0.099 Sum_probs=69.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (501)
|+||++-....|++.-.+.+-..|+++ +.+++|++.+.+.+.+... +.++-...-+ ... ..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~---------p~I~~vi~~~--~~~---~~--- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN---------PEIDKVIIID--KKK---KG--- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC---------hHhhhhcccc--ccc---cc---
Confidence 689999999999999999999999998 5999999998888765432 1222111100 000 00
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010775 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~ 150 (501)
.. ......+.+.++.. ++|+||.=.-..-...++..+++|.-.-
T Consensus 65 -----------~~-~~~~~~l~~~lr~~------~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 -----------LG-LKERLALLRTLRKE------RYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred -----------cc-hHHHHHHHHHhhcc------CCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 11 12334555556543 7999997665555777777888887664
No 157
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=82.69 E-value=13 Score=36.96 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=67.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEE-eCCCCCCCCCCCCCCc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFE-AIPDGLPASSDESPTA 87 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~l~~~~~~~~~~~~~~ 87 (501)
||||++-..+.|++.-...+.+.|+++ +.+|+|++.+.+.+.++.. +.++-. .++. ... .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~vd~vi~~~~--~~~------~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM---------PEVNEAIPMPL--GHG------A 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC---------CccCEEEeccc--ccc------h
Confidence 689999999999999999999999986 9999999998777766542 233321 1221 000 0
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVL 149 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~ 149 (501)
.. + ....++++.++.. +||+||.=....-...++...|+|.-.
T Consensus 64 ---~~-~---------~~~~~l~~~lr~~------~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 ---LE-I---------GERRRLGHSLREK------RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---hh-h---------HHHHHHHHHHHhc------CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 00 0 0122344555543 899998644444566777778888655
No 158
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.06 E-value=8.1 Score=35.11 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
++.+|++.+.++..|-....-++..|.++|++|++++..-..+.+.+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 35799999999999999999999999999999999886644444443
No 159
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.96 E-value=7.1 Score=43.58 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=68.3
Q ss_pred HhhcCCCccceEe---ccCch-hHHHhhhcCCc---eEecCCCCchhhhHHhhhhhhc-ceeeecCCCCCccHHHHHHHH
Q 010775 372 EVLKHPSIGGFLT---HCGWN-SIVESLCSGVP---MICWPFTGDQPTNGRYVCNEWG-VGMEINGDDEDVIRNEVEKLV 443 (501)
Q Consensus 372 ~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~g-~G~~l~~~~~~~~~~~l~~ai 443 (501)
+++..+++ |+. .-|+| +..|++++|+| ++++.-++ ..+.. +| -|+.+ +..+.++++++|
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allV----nP~D~~~lA~AI 437 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLV----NPWNITEVSSAI 437 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEE----CCCCHHHHHHHH
Confidence 47777888 774 44776 77799999999 44444322 11111 23 46777 457999999999
Q ss_pred HHHhc-ChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010775 444 REMME-GEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 491 (501)
Q Consensus 444 ~~vl~-~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~~ 491 (501)
.++|+ +++ .-+++.+++.+.+.. .+...-++++++++.+..
T Consensus 438 ~~aL~m~~~--er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 438 KEALNMSDE--ERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHhCCHH--HHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 99998 433 245566667776664 567777888888887664
No 160
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=81.60 E-value=4.5 Score=37.84 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
||||+.. --.=|---..+|++.|. .+++|+++.|...+.-+
T Consensus 1 mrILlTN-DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTN-DDGIHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEec-CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 4555544 22234445778888888 99999999998777643
No 161
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=80.62 E-value=66 Score=32.25 Aligned_cols=116 Identities=20% Similarity=0.130 Sum_probs=64.7
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccce
Q 010775 303 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGF 382 (501)
Q Consensus 303 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~ 382 (501)
|-|.-+.||+. .+|++-+.....-++..++++. |..+...- +.-.+| |--+-++
T Consensus 195 P~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGGG-------LiaGIat~----vk~~~p--------~vkIIGV 248 (457)
T KOG1250|consen 195 PDIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGGG-------LIAGIATG----VKRVGP--------HVKIIGV 248 (457)
T ss_pred chhhcCcchHH-------HHHHHhhcCCCCeEEEecCCch-------hHHHHHHH----HHHhCC--------CCceEEE
Confidence 45555666664 4455555444445666666654 33332210 011111 3333335
Q ss_pred EeccCchhHHHhhhcCCceEe--cCCCCch------hhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChh
Q 010775 383 LTHCGWNSIVESLCSGVPMIC--WPFTGDQ------PTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 383 I~HGG~gs~~eal~~GvP~v~--~P~~~DQ------~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~ 451 (501)
-|+ |+.+++.|+.+|.|+-. ++.++|- ..|+.++++.+-... --++.+++..+|.++++|++
T Consensus 249 Et~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~v------vvV~~~ei~aaI~~l~edek 318 (457)
T KOG1250|consen 249 ETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRV------VVVEDDEIAAAILRLFEDEK 318 (457)
T ss_pred eec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceE------EEeccHHHHHHHHHHHHhhh
Confidence 555 46799999999998743 3334442 234555533222222 24778999999999999875
No 162
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=78.32 E-value=3.1 Score=34.82 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=37.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
+||++...|+.+=.. ...+.+.|.++|++|+++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 488999989877777 999999999999999999998777766654
No 163
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=78.29 E-value=31 Score=32.58 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (501)
||||+..=-+. |---..+|+++|++ +|+|+++.|...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 45555543222 33447788888864 689999999776653
No 164
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=77.85 E-value=8.2 Score=40.75 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=61.0
Q ss_pred cCCeeecccChH---HhhcCCCccceEecc---CchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 360 EKGFVASWCPQE---EVLKHPSIGGFLTHC---GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 360 ~n~~~~~~vpq~---~lL~~~~~~~~I~HG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
..|.+.++.+.. .++.+.++ +|.=+ |.++..||+.+|+|+| .......| +...=|.-+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li------ 472 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII------ 472 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe------
Confidence 466778888832 47777777 88876 7789999999999999 22233444 443446555
Q ss_pred ccHHHHHHHHHHHhcChh-hHHHHHHHHHHHHHH
Q 010775 434 VIRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLA 466 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~~~~-~~~~r~~a~~~~~~~ 466 (501)
-+..+|.++|..+|.+.+ -.++...+-+.++..
T Consensus 473 ~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 473 DDISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 257889999999999874 123444444444433
No 165
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=77.46 E-value=45 Score=30.05 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=30.9
Q ss_pred cEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 11 VHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 11 ~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
+|++.+..+ +.|-..-...||..|+++|++|.++-.....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 566666544 4588888999999999999999998654433
No 166
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=77.38 E-value=24 Score=33.31 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=27.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (501)
||||+..=-+. |---+.+|+++|.+. |+|+++.|...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 45555542222 334478899999988 79999999776653
No 167
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=76.53 E-value=12 Score=34.63 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=32.8
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 19 PFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 19 ~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
|+-|-..-.+.||.+|+++|-.|+++=..+++.....
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 5779999999999999999999999998888776554
No 168
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=75.33 E-value=49 Score=30.18 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
|++.-+|+.|-....-.||++|.+++|+|.-++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 6677788999999999999999999999987655
No 169
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=74.85 E-value=5.5 Score=38.87 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=31.5
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 12 HAVCIP-SPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 12 ~il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
|++|+. -|+-|-..-..++|-.++++|++|.++++.+.+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 445444 4566999999999999999999999999876554
No 170
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.71 E-value=13 Score=32.23 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=43.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD 75 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~ 75 (501)
.|+|.+.-.|+.|-..-++.+++.|.++|+.|-=+-++.-++- ...-||+.+++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g----------GkR~GF~Ivdl~t 60 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG----------GKRIGFKIVDLAT 60 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC----------CeEeeeEEEEccC
Confidence 4799999999999999999999999999999876555444431 1123777788763
No 171
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.55 E-value=25 Score=34.54 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=31.9
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 11 VHAVCIPS-PFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 11 ~~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
+||+|++- |+-|-..-..++|-.|++.|..|.++++.+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 46666664 355999999999999999999988888765443
No 172
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=74.53 E-value=24 Score=32.89 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=23.4
Q ss_pred eeEEE-EcCCcc-hHHHHHHHcCCCeEEEecc
Q 010775 124 VSCII-SDGFLP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 124 ~DlVi-~D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
||+++ +|+..- -++.=|.++|||+|.++-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 89887 555443 5777899999999998665
No 173
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=74.11 E-value=21 Score=33.75 Aligned_cols=43 Identities=14% Similarity=0.004 Sum_probs=33.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
+++..-|+.|.......+|..+++.|++|.++..... ..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 4455567779999999999999999999999987654 344443
No 174
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=73.92 E-value=12 Score=35.51 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
|+|+++. +.|. -..|++.|.++||+|+..+...+.
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCc
Confidence 4666654 3332 568999999999999987755443
No 175
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=73.53 E-value=13 Score=34.13 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=31.8
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 12 HAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 12 ~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
+|+++++| +-|.......|+-.|+++|+.|.++-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 67788877 5599999999999999999999998765
No 176
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=73.28 E-value=56 Score=31.09 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=29.2
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 10 KVHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 10 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
+.|++.++.+ +.|-..-...||..|++.|++|.++-..
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4566655555 4477788899999999999999998653
No 177
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=72.92 E-value=22 Score=33.44 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=27.4
Q ss_pred cEEEEEcCCCcc-CHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 11 VHAVCIPSPFQS-HIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 11 ~~il~~~~~~~G-H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
||||+.. -.| |---+.+|+++|.+.| +|+++.|...+.-.
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 4555543 223 2234788999999988 89999998776543
No 178
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=72.83 E-value=17 Score=34.66 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=35.2
Q ss_pred CeeecccChHHhhcCCCccceEeccCchhHHHhhhcCCceEecCC
Q 010775 362 GFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF 406 (501)
Q Consensus 362 ~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 406 (501)
+.+.+-++-.++|.+++. +||-.+ .+-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 345677888899999999 888876 478999999999999764
No 179
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=72.77 E-value=19 Score=38.24 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=47.8
Q ss_pred ChHHhhcCCCccceEe---ccCch-hHHHhhhcCCceEecCCCC-chhhhHHhhhhhh-cceeeecCCC---CCccHHHH
Q 010775 369 PQEEVLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTG-DQPTNGRYVCNEW-GVGMEINGDD---EDVIRNEV 439 (501)
Q Consensus 369 pq~~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~~-g~G~~l~~~~---~~~~~~~l 439 (501)
+..+++..+++ +|. +=|+| ++.||+++|+|+|.....+ .... ..++..- ..|+.+.... -.-+.+.|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHH
Confidence 35567777888 665 45654 9999999999999977643 2211 1121221 2466664211 13456778
Q ss_pred HHHHHHHhcCh
Q 010775 440 EKLVREMMEGE 450 (501)
Q Consensus 440 ~~ai~~vl~~~ 450 (501)
.+++.+++..+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888544
No 180
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=72.52 E-value=89 Score=29.61 Aligned_cols=81 Identities=16% Similarity=0.321 Sum_probs=53.0
Q ss_pred cCCeeecccCh---HHhhcCCCccceEec---cCch-hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCC
Q 010775 360 EKGFVASWCPQ---EEVLKHPSIGGFLTH---CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 432 (501)
Q Consensus 360 ~n~~~~~~vpq---~~lL~~~~~~~~I~H---GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~ 432 (501)
+++.+.+++++ ..++..+++ ++.- .|.| ++.|++++|+|+|..... .....+ ...+.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~-~~~~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVV-EDGETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHh-cCCCceE-ecC---
Confidence 56777888882 336776776 6655 3554 459999999999665443 223333 3322466 332
Q ss_pred CccHHHHHHHHHHHhcChh
Q 010775 433 DVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 433 ~~~~~~l~~ai~~vl~~~~ 451 (501)
..+.+++.+++..++++.+
T Consensus 326 ~~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 326 PGDVEELADALEQLLEDPE 344 (381)
T ss_pred CCCHHHHHHHHHHHhcCHH
Confidence 2278999999999998873
No 181
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.22 E-value=10 Score=30.95 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=35.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
.|+++...+..-|-.-...++..|.++||+|.++......+.+
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 3789999999999999999999999999999999765443444
No 182
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=71.90 E-value=40 Score=25.89 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 27 MLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
++.+++.|.+.|+++. +++.....+++
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHH
Confidence 4688999999999983 44455555554
No 183
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=71.37 E-value=45 Score=30.54 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=26.5
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEe
Q 010775 13 AVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVN 45 (501)
Q Consensus 13 il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (501)
|++.... ..|-..-.+.|++.|+++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 3444444 45999999999999999999998865
No 184
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=69.05 E-value=6.9 Score=35.43 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (501)
||||+..=-+. +---+..|+++|.+.||+|+++.|...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 67777664444 444578999999888999999999877654
No 185
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=68.92 E-value=1.2e+02 Score=29.59 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=60.2
Q ss_pred cCCee-ecccChH---HhhcCCCccceEec--cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 360 EKGFV-ASWCPQE---EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 360 ~n~~~-~~~vpq~---~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
+++.+ .+++|.. ++|..++++-|+|+ =|+||+.-.++.|+|+++-- +-++|.... +. |+-+-.+. +.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e~-gv~Vlf~~--d~ 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-EQ-GLPVLFTG--DD 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-hC-CCeEEecC--Cc
Confidence 57764 6777754 59999999777775 48999999999999999742 344555544 43 77776666 78
Q ss_pred ccHHHHHHHHHHHhc
Q 010775 434 VIRNEVEKLVREMME 448 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~ 448 (501)
++...++++=+++..
T Consensus 279 L~~~~v~e~~rql~~ 293 (322)
T PRK02797 279 LDEDIVREAQRQLAS 293 (322)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999888887665543
No 186
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=68.84 E-value=15 Score=40.66 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=69.7
Q ss_pred eecccChHH---hhcCCCccceEec---cCc-hhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccH
Q 010775 364 VASWCPQEE---VLKHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 436 (501)
Q Consensus 364 ~~~~vpq~~---lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~ 436 (501)
+.+++++.+ ++..+++ ++.- -|+ .++.|++++|+|-..+|+..+--.-+..+ .-|+.++ ..+.
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~----P~d~ 415 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVN----PNDI 415 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEEC----CCCH
Confidence 456778765 6677887 6653 354 48889999977522222221111111122 2366664 4679
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010775 437 NEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 491 (501)
Q Consensus 437 ~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~~ 491 (501)
++++++|.++++.+.. +.+++.+++.+.++. -+...-++++++.+.+..
T Consensus 416 ~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 416 EGIAAAIKRALEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELREAA 464 (726)
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHH
Confidence 9999999999985421 245555556666553 677888888888888773
No 187
>PRK11519 tyrosine kinase; Provisional
Probab=67.92 E-value=98 Score=34.31 Aligned_cols=40 Identities=8% Similarity=0.218 Sum_probs=31.8
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 10 KVHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 10 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
+.|++++++ |+-|-..-...||..|+..|++|.++-....
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 446666665 4668888999999999999999999976433
No 188
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.37 E-value=12 Score=31.67 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (501)
++.+|++.+.+..||-...--+++.|+..|.+|...+.-...+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e 54 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEE 54 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHH
Confidence 57899999999999999999999999999999998775443333
No 189
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=66.73 E-value=13 Score=37.35 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=66.4
Q ss_pred cCCeee-cccChHHhhcCCCccceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCC---CCcc
Q 010775 360 EKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD---EDVI 435 (501)
Q Consensus 360 ~n~~~~-~~vpq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~---~~~~ 435 (501)
+++... +..+-.++|..+++ +||=-. +.+.|.+..++|++....-.|..... .|.-......- .--+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeCC
Confidence 455543 45567889999999 999885 58899999999999877666655322 23322221000 1346
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 010775 436 RNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 484 (501)
Q Consensus 436 ~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li 484 (501)
.++|.++|..++++++ .++++.+++.+.+-. ..+|.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENPD--EYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 7999999999887664 356667777777753 345666555555443
No 190
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.55 E-value=1.1e+02 Score=30.33 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=76.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (501)
.+|-+++++..|--||--.|.-=|..|++.|.+|.+++.-..... ++ +.+.++++++.++. ++.. ....
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~------l~~hprI~ih~m~~-l~~~---~~~p 78 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EE------LLNHPRIRIHGMPN-LPFL---QGGP 78 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HH------HhcCCceEEEeCCC-Cccc---CCCc
Confidence 456799999999999999999999999999999999985433221 11 12356899999884 2222 1111
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcC-CcchHHHHH----HHcCCCeEEEeccchhH
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDG-FLPFTITAA----QQLGLPIVLFFTISACS 157 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~-~~~~~~~~A----~~lgiP~v~~~~~~~~~ 157 (501)
.-+...++.+.... ..+-.++. + .++|.+++-. -...+..+| .-.|...++=|....|+
T Consensus 79 ~~~~l~lKvf~Qfl--~Ll~aL~~-~--------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 79 RVLFLPLKVFWQFL--SLLWALFV-L--------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhhhHHHHHHHHH--HHHHHHHh-c--------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 11222333333332 23333333 2 3778877543 333444444 34467777766655554
No 191
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=66.13 E-value=31 Score=33.28 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=33.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
.|-+.-.|+-|--.-.-+|..+|.++||+|-++...+..
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 677777888999999999999999999999999865443
No 192
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=65.73 E-value=19 Score=27.14 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (501)
--++++..+...|...+..+|+.|++.|..|..+-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46777888999999999999999999999998653
No 193
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=65.49 E-value=64 Score=29.04 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.5
Q ss_pred CCeeEEEEcC-Ccc-hHHHHHHHcCCCeEEEeccc
Q 010775 122 PAVSCIISDG-FLP-FTITAAQQLGLPIVLFFTIS 154 (501)
Q Consensus 122 ~~~DlVi~D~-~~~-~~~~~A~~lgiP~v~~~~~~ 154 (501)
..||+||+-. ... .++.=|.++|||+|.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 3789988543 333 57778999999999996553
No 194
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=65.43 E-value=12 Score=33.89 Aligned_cols=43 Identities=7% Similarity=-0.079 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (501)
+.||++.-.|+.|=+.-...+++.|.++||+|+++.++...+.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTT 47 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHH
Confidence 4578888877766665578999999999999999998765543
No 195
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=65.06 E-value=85 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCE
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFH 40 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~ 40 (501)
|||+|+.++.. ..+..+.++|.+++|+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCC
Confidence 68999976665 4566677899999998
No 196
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=64.41 E-value=1.1e+02 Score=27.69 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=78.4
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhcc-CCeeecccChHHhhcCCCc
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE-KGFVASWCPQEEVLKHPSI 379 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~-n~~~~~~vpq~~lL~~~~~ 379 (501)
++.++.|+.|.+. ...+..|...+..+.++-. . +.+.+.+..+. .+.......+..-+..+++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 4579999888875 3445566667766655432 1 22222222222 3334444444556777777
Q ss_pred cceEeccCchhHHHhhh----cCCceEecC--CCCchhhhHHhhhhhhcceeeecCCC-CCccHHHHHHHHHHHhcChhh
Q 010775 380 GGFLTHCGWNSIVESLC----SGVPMICWP--FTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKG 452 (501)
Q Consensus 380 ~~~I~HGG~gs~~eal~----~GvP~v~~P--~~~DQ~~na~rv~~~~g~G~~l~~~~-~~~~~~~l~~ai~~vl~~~~~ 452 (501)
+|.--+.-.+.+.++ .++++-++- -..| +..-..+ ++-++-+.+.... .-.-+..|++.|..++ +++.
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~-f~~Pa~~-~~g~l~iaIsT~G~sP~la~~lr~~ie~~~-~~~~ 148 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNVITDAESGN-VVFPSAL-HRGKLTISVSTDGASPKLAKKIRDELEALY-DESY 148 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCe-EEEeeEE-EcCCeEEEEECCCCChHHHHHHHHHHHHHc-chhH
Confidence 888888777776665 455554431 1111 2222223 3334444444310 2223355777777666 3333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010775 453 KQMRNKAMEWKGLAEEA 469 (501)
Q Consensus 453 ~~~r~~a~~~~~~~~~~ 469 (501)
+.+-+.+.++++.++..
T Consensus 149 ~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 149 ESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34667777777777753
No 197
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=62.00 E-value=42 Score=32.93 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=24.3
Q ss_pred CeeEEEE-cCCcc-hHHHHHHHcCCCeEEEeccc
Q 010775 123 AVSCIIS-DGFLP-FTITAAQQLGLPIVLFFTIS 154 (501)
Q Consensus 123 ~~DlVi~-D~~~~-~~~~~A~~lgiP~v~~~~~~ 154 (501)
.||+||+ |+..- .++.=|.++|||+|.++-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 6898884 54433 57778999999999986553
No 198
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=61.01 E-value=78 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEE
Q 010775 19 PFQSHIKAMLKLAKLLHHKGFHITFV 44 (501)
Q Consensus 19 ~~~GH~~p~l~La~~L~~rGH~Vt~~ 44 (501)
+..|-..-.+.|++.|+++|.+|.++
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 45689999999999999999999986
No 199
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=60.73 E-value=22 Score=32.19 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
.+.+|++.+.++..|-....-++..|..+|++|++++..-..+.+.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 356999999999999999999999999999999999987655555443
No 200
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=60.16 E-value=22 Score=29.34 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=36.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
||++.+.++..|.....-++.-|...|++|++.+.....+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588999999999999999999999999999999975444333
No 201
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=60.02 E-value=53 Score=29.33 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC--CCCCCCCCCCCCcccH-HHHHHHHHH-h
Q 010775 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPASSDESPTAQDA-YSLGENIIN-N 100 (501)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~--~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 100 (501)
.-...+|+.|.+.|.++. +++.....+.+. |+.+..+. .++|+.. ..+...+ +.....+.. .
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~----------GI~v~~V~k~TgfpE~l--~GRVKTLHP~ihggiL~~~ 76 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKEA----------GIPVTDVSDITGFPEIL--GGRVKTLHPKIHGGILARR 76 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHHc----------CCeEEEhhhccCCcHhh--CCccccCChhhhhhhhcCC
Confidence 447899999999999984 555677777665 67666665 3666662 1222222 222222222 2
Q ss_pred hcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHH
Q 010775 101 VLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITA 139 (501)
Q Consensus 101 ~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~ 139 (501)
-...+. -+++..- ...|+||++ +.++.-.+
T Consensus 77 ~~~~~~--~~~~~~i------~~idlVvvN-lYpF~~~~ 106 (187)
T cd01421 77 DNEEHK--DLEEHGI------EPIDLVVVN-LYPFEETV 106 (187)
T ss_pred CChhHH--HHHHcCC------CCeeEEEEc-ccChHHHh
Confidence 112233 2344332 378999999 45544433
No 202
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=59.64 E-value=12 Score=33.23 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
|||.++.- .|++ --.|+++..+|||+||-++-..
T Consensus 1 mKIaiIgA--sG~~--Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGA--SGKA--GSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEec--Cchh--HHHHHHHHHhCCCeeEEEEeCh
Confidence 56666643 3332 2367899999999999987643
No 203
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=59.31 E-value=1.5e+02 Score=27.42 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=27.9
Q ss_pred CCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 18 SPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 18 ~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
-|+.|-..-...||..|+++|++|.++-....
T Consensus 10 KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 46779999999999999999999999986543
No 204
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=59.30 E-value=45 Score=31.67 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhC---CCEEEEEeCCcchHH
Q 010775 26 AMLKLAKLLHHK---GFHITFVNTEFNHRR 52 (501)
Q Consensus 26 p~l~La~~L~~r---GH~Vt~~~~~~~~~~ 52 (501)
-+.+|++.|... |++|+++.|...+.-
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg 44 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSG 44 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 466777777663 479999999776653
No 205
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=57.92 E-value=1.6e+02 Score=30.85 Aligned_cols=27 Identities=11% Similarity=0.345 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 21 QSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 21 ~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
.|-..-...|++.|+++|.+|..+-+-
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 488889999999999999999988763
No 206
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=56.69 E-value=78 Score=28.49 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=60.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch---HHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH---RRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 86 (501)
+-.|.++...+.|-....+.+|-..+.+|+.|.++-.=... ..... +...+++.+...+.++.-. .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~------l~~l~~v~~~~~g~~~~~~---~-- 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNL------LEFGGGVEFHVMGTGFTWE---T-- 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHH------HhcCCCcEEEECCCCCccc---C--
Confidence 45788888889999999999999999999999998632111 11111 1112468888777654332 1
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010775 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (501)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~ 134 (501)
.+...-.. .+ ...++...+.+.. .++|+||.|.+..
T Consensus 91 -~~~~e~~~----~~-~~~~~~a~~~l~~------~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 -QDRERDIA----AA-REGWEEAKRMLAD------ESYDLVVLDELTY 126 (191)
T ss_pred -CCcHHHHH----HH-HHHHHHHHHHHhC------CCCCEEEEehhhH
Confidence 11111111 11 2223333333322 4899999998664
No 207
>PTZ00445 p36-lilke protein; Provisional
Probab=56.24 E-value=50 Score=30.17 Aligned_cols=115 Identities=12% Similarity=-0.006 Sum_probs=60.1
Q ss_pred cCHHH-HHHHHHHHHhCCCEEEEEeCCcchH--------------HHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010775 22 SHIKA-MLKLAKLLHHKGFHITFVNTEFNHR--------------RLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (501)
Q Consensus 22 GH~~p-~l~La~~L~~rGH~Vt~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 86 (501)
+|+.| +..+.++|.++|-.|+++|...... .+...... ....+....+=..+|.. ++.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~----s~~~~~i~~~~~yyp~~---w~~ 146 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKK----SKCDFKIKKVYAYYPKF---WQE 146 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHh----cCccceeeeeeeeCCcc---cCC
Confidence 45667 8899999999999999999765533 22211110 00111111111112222 222
Q ss_pred cccHHHHHHHHHHhhcc--hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEe
Q 010775 87 AQDAYSLGENIINNVLL--HPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (501)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~ 151 (501)
..+... +......--. -+++.++++..- ..-++++.|-. ..-+..|+++|+-.+.+.
T Consensus 147 p~~y~~-~gl~KPdp~iK~yHle~ll~~~gl------~peE~LFIDD~-~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 147 PSDYRP-LGLDAPMPLDKSYHLKQVCSDFNV------NPDEILFIDDD-MNNCKNALKEGYIALHVT 205 (219)
T ss_pred hhhhhh-hcccCCCccchHHHHHHHHHHcCC------CHHHeEeecCC-HHHHHHHHHCCCEEEEcC
Confidence 211110 0000000001 133666666532 13488999964 578899999999999874
No 208
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=55.34 E-value=31 Score=32.11 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=52.7
Q ss_pred CCceEEEeecccc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhcc----CCe-eecccC--h
Q 010775 301 PKSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE----KGF-VASWCP--Q 370 (501)
Q Consensus 301 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~----n~~-~~~~vp--q 370 (501)
+++.|.+..|+.. ..+.+.+..+++.+.+.+.++++..+..+. .....+.+.+ ++. +.+-.+ +
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-------EKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-------HHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-------HHHHHHHHHHhcccceEeecCCCCHHH
Confidence 4568888888864 456788999999998887666554332210 0111112222 222 323233 3
Q ss_pred -HHhhcCCCccceEeccCchhHHHhhhcCCceEec
Q 010775 371 -EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 404 (501)
Q Consensus 371 -~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 404 (501)
..++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 358889998 88765 48999999999999998
No 209
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=55.28 E-value=1.6e+02 Score=26.58 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=31.3
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHh-CCCEEEEEeCCcc
Q 010775 10 KVHAVCIPS--PFQSHIKAMLKLAKLLHH-KGFHITFVNTEFN 49 (501)
Q Consensus 10 ~~~il~~~~--~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~ 49 (501)
+++++.+.. ++.|-..-...||..|++ +|++|.++-....
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 467666665 566888889999999996 6999999865443
No 210
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=54.98 E-value=40 Score=31.77 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (501)
|||+++.-.+.| ..|++.|.++|+ |++-.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv 29 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSV 29 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEE
Confidence 578887755555 478999999999 65543
No 211
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=54.78 E-value=1.1e+02 Score=26.63 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=21.4
Q ss_pred ccceEeccCch------hHHHhhhcCCceEecC
Q 010775 379 IGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 379 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+.+++|.|-| .+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 33388888755 6778899999999985
No 212
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=54.57 E-value=1.2e+02 Score=27.12 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHK 37 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r 37 (501)
.+.++++++- |+.||.-=|+.|-+.|.++
T Consensus 36 ~~s~~~lVvl-GSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 36 DKSLSTLVVL-GSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred CCcceEEEEE-cCCCcHHHHHHHHHHHHhh
Confidence 3456776665 9999999999999999777
No 213
>PRK05920 aromatic acid decarboxylase; Validated
Probab=54.55 E-value=23 Score=32.25 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
..||++.-.|+.+= .=...+.+.|.+.||+|+++.++.....+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 45888887776655 5788999999999999999999877666644
No 214
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=53.88 E-value=1.5e+02 Score=25.79 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCCccceEeccCch------hHHHhhhcCCceEecC
Q 010775 376 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 376 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+.+ +++|.|-| .+.+|...++|+|++.
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3555 99998866 6789999999999986
No 215
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=53.33 E-value=36 Score=31.25 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
++.+|++.+.++..|-....-++-.|..+|++|++++..-..+.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHH
Confidence 45799999999999999999999999999999999997654444443
No 216
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=53.06 E-value=11 Score=32.78 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
||.++-.|..|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666666665 79999999999999999864
No 217
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=52.84 E-value=1.6e+02 Score=27.29 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=51.6
Q ss_pred CcEEEEEcCCCc--cCHH--HHHHHHHHHHhCCCEEEEEeCCcc--hHHHhhhhCCCCCCCCCCee--EEeCCCCCCCCC
Q 010775 10 KVHAVCIPSPFQ--SHIK--AMLKLAKLLHHKGFHITFVNTEFN--HRRLLKARGQHSLDGLPSFR--FEAIPDGLPASS 81 (501)
Q Consensus 10 ~~~il~~~~~~~--GH~~--p~l~La~~L~~rGH~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~--f~~l~~~~~~~~ 81 (501)
+..|++.|..+. -.+. -+.+|++.|.++|.+|.+++++.. .+.+..... +.. +..+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~--------~~~~~~~~~~------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA--------GLQNPVINLA------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT--------THTTTTEEET-------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH--------hcccceEeec-------
Confidence 456777776544 2222 279999999999989988888766 232222210 110 11110
Q ss_pred CCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 010775 82 DESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (501)
. ...+.+++.-+. ..|++|+-. .....+|..+|+|++.++..
T Consensus 170 -------------------~-~~~l~e~~ali~--------~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 170 -------------------G-KTSLRELAALIS--------RADLVIGND--TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp -------------------T-TS-HHHHHHHHH--------TSSEEEEES--SHHHHHHHHTT--EEEEESS
T ss_pred -------------------C-CCCHHHHHHHHh--------cCCEEEecC--ChHHHHHHHHhCCEEEEecC
Confidence 0 113344444443 449999653 25788999999999999654
No 218
>PRK00784 cobyric acid synthase; Provisional
Probab=52.73 E-value=1.8e+02 Score=30.49 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=27.3
Q ss_pred EEEEcCCC-ccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 13 AVCIPSPF-QSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 13 il~~~~~~-~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
+++....+ -|-..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 44444443 49999999999999999999998755
No 219
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=52.59 E-value=1.6e+02 Score=25.65 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=28.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (501)
-|.+++..+.|-....+.+|-..+.+|+.|.++-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566677788999999999999999999999943
No 220
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=52.37 E-value=15 Score=37.10 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=25.5
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 010775 13 AVCIP-SPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (501)
Q Consensus 13 il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (501)
|++.. .-+.|-..-++.|.++|++||++|.=+-
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfK 36 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFK 36 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcccccc
Confidence 33433 3355999999999999999999998543
No 221
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.70 E-value=43 Score=28.23 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=38.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
.+|++.+.++.+|-.----++..|.+.|++|..++.....+.+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 489999999999999999999999999999999997655454443
No 222
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=51.64 E-value=49 Score=34.30 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.8
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 13 AVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 13 il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
+++.... ..|-..-...|++.|+++|++|..+-+
T Consensus 6 i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 6 LVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4444333 348999999999999999999998865
No 223
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=51.55 E-value=1.5e+02 Score=25.21 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=30.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
+.+.-.++.|-...+..++..|.++|++|.++...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 56666778899999999999999999999998754
No 224
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=51.31 E-value=1.2e+02 Score=24.42 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCC--CCCCCCCCCCCcccHHHHHHHHHHh
Q 010775 23 HIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD--GLPASSDESPTAQDAYSLGENIINN 100 (501)
Q Consensus 23 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (501)
+-.-++.+++.|.+.|.++ ++++...+.+.+. ++.+..+.. +.+.. +
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~----------gi~~~~v~~~~~~~~~--------~----------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLEN----------GIPVTPVAWPSEEPQN--------D----------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHc----------CCCceEeeeccCCCCC--------C-----------
Confidence 5556889999999999888 3555666666543 444444321 11110 0
Q ss_pred hcchHHHHHHHHhhcCCCCCCCCeeEEEEcCC---------cchHHHHHHHcCCCeEE
Q 010775 101 VLLHPFLDLLAKLNDSSNSVNPAVSCIISDGF---------LPFTITAAQQLGLPIVL 149 (501)
Q Consensus 101 ~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~---------~~~~~~~A~~lgiP~v~ 149 (501)
.+.+.+++++ .++|+||.-+. .+.-.-.|-.+|||++.
T Consensus 60 --~~~i~~~i~~---------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 --KPSLRELLAE---------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred --chhHHHHHHc---------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1233444444 38899997432 23456678999999974
No 225
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.06 E-value=42 Score=33.53 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=37.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
.++.-|+|+-.-+.|-...+..+|..++++|+.+-+++..-|+.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 45566777777788999999999999999999999999776654
No 226
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.91 E-value=60 Score=33.06 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
++..|+++-.=+.|-....-.||+.|.++|+.|-+++..-++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 4567888877788999999999999999999999999876654
No 227
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=50.74 E-value=38 Score=29.60 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHh-CC--CEEEEE
Q 010775 23 HIKAMLKLAKLLHH-KG--FHITFV 44 (501)
Q Consensus 23 H~~p~l~La~~L~~-rG--H~Vt~~ 44 (501)
|...-.+|+++|.+ +| .+|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77888999999988 45 455543
No 228
>PLN02939 transferase, transferring glycosyl groups
Probab=50.15 E-value=34 Score=38.59 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 7 ACSKVHAVCIPSP------FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 7 ~~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
+.++|||+|++.- ..|=-...-+|.++|++.||+|.++.|..
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3678999998642 12333456789999999999999999854
No 229
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=49.72 E-value=1.6e+02 Score=26.30 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=30.7
Q ss_pred ccCHHH-HHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC
Q 010775 21 QSHIKA-MLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP 74 (501)
Q Consensus 21 ~GH~~p-~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~ 74 (501)
+|=+.- .-.|+..|+++||+||+.+.......- .....+++...+|
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIP 62 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeC
Confidence 355554 456888889999999999875544211 1234577777776
No 230
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=49.26 E-value=1.8e+02 Score=30.51 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=72.2
Q ss_pred eeecccChHH---hhcCCCccceEe---ccCchhH-HHhhhcCC----ceEecCCCCchhhhHHhhhhhhcceeeecCCC
Q 010775 363 FVASWCPQEE---VLKHPSIGGFLT---HCGWNSI-VESLCSGV----PMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 431 (501)
Q Consensus 363 ~~~~~vpq~~---lL~~~~~~~~I~---HGG~gs~-~eal~~Gv----P~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~ 431 (501)
++.+.+|+.+ ++..+++ ++. .-|+|-+ .|.++++. |+|.=-+.+ |. +.+.-++.+
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllV---- 430 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLT---- 430 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEE----
Confidence 4567788766 5666777 443 4588854 49988877 444332221 11 334446677
Q ss_pred CCccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010775 432 EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 490 (501)
Q Consensus 432 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~ 490 (501)
+-.+.++++++|.++|+.+.. +-+++.+++.+.++. .+...=.+.++++|.+.
T Consensus 431 NP~d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 431 NPYDPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred CCCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 457999999999999987642 246677777777764 66778888999888764
No 231
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=49.01 E-value=74 Score=33.12 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC--CCCCCC
Q 010775 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPAS 80 (501)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~--~~~~~~ 80 (501)
.-.+.+|+.|.+.|.++. ++......+.+. |+.+..+. .++|+.
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L~e~----------GI~v~~Vsk~TgfPEi 56 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLLAEA----------GVPVTEVSDYTGFPEM 56 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHHHHC----------CCeEEEeecccCCchh
Confidence 347789999999999984 565677777665 67776665 367776
No 232
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=48.70 E-value=29 Score=34.97 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=36.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 54 (501)
.=||+---|+-|--.=++.++..|+++| .|.+++.+....++.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 4567777788899999999999999999 999999988777654
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=48.67 E-value=34 Score=32.38 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=39.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
...++++-.++.|-..=..+||.+|.++|+.|+|++.+.....+..+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34788888888888888999999999889999999988777766654
No 234
>PRK14099 glycogen synthase; Provisional
Probab=48.18 E-value=29 Score=36.40 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=30.3
Q ss_pred CCcEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 9 SKVHAVCIPSP------FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 9 ~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
++||||+++.- +.|=-...-+|.++|+++||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46899998642 12444457789999999999999999853
No 235
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=48.13 E-value=1.6e+02 Score=27.27 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=66.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (501)
+.|+-|+++-.|++|-..-...|++-|.-.|++..++....++........ .. +-+... .
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~--------~~------~ff~p~------n 69 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQ--------DA------EFFDPD------N 69 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S---------G------GGGSTT-------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccc--------cc------ccCCCC------C
Confidence 567889999999999999999999999999999999998777766543200 00 001111 0
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc------hHHHHHHHcCCCeEEEe
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP------FTITAAQQLGLPIVLFF 151 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~------~~~~~A~~lgiP~v~~~ 151 (501)
.. ...+...+....+++++.-+... +-++.|.|.... +........|+.++.+-
T Consensus 70 ---~~-~~~~R~~~a~~~l~dl~~~l~~~------~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIE 129 (222)
T PF01591_consen 70 ---EE-AKKLREQIAKEALEDLIEWLQEE------GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIE 129 (222)
T ss_dssp ---HH-HHHHHHHHHHHHHHHHHHHHHTS--------SEEEEES---SHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ---hH-HHHHHHHHHHHHHHHHHHHHhcC------CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 11 11122222134566666666533 558999998655 34556778887777663
No 236
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=48.03 E-value=28 Score=31.09 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=34.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 54 (501)
||++...|+.|=+. ...+.+.|.++|++|.++-++.....+.
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 68888878777665 7999999999999999999877666543
No 237
>PRK06321 replicative DNA helicase; Provisional
Probab=47.74 E-value=2e+02 Score=30.09 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHh
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~~~ 54 (501)
+++..-|+.|-..-.+.+|...+ +.|+.|.|++-+...+.+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 56677789999999999999987 4599999999886655543
No 238
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=47.59 E-value=29 Score=33.96 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=39.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHh
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLL 54 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~ 54 (501)
||||++-..+.|++.-...+.+.|++. +.+|++++.+.+.+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 689999999999999999999999987 99999999887766543
No 239
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=47.53 E-value=25 Score=31.34 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 54 (501)
||++...|+-|-+.- ..+.+.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 356666677676665 889999999999999999987776654
No 240
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.45 E-value=63 Score=30.03 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=31.9
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch---HHHHHHHcCCCeEEE
Q 010775 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF---TITAAQQLGLPIVLF 150 (501)
Q Consensus 103 ~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~---~~~~A~~lgiP~v~~ 150 (501)
...++.+++.+. +-++.+.|.-+.. +..+|...|||++.=
T Consensus 137 ~~aM~~~m~~Lk--------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 137 EDAMEKLMEALK--------ERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHHHHHHH--------HCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 456788888886 4499999998873 567899999998873
No 241
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=47.39 E-value=1.8e+02 Score=24.96 Aligned_cols=139 Identities=16% Similarity=0.172 Sum_probs=67.4
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceE
Q 010775 304 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFL 383 (501)
Q Consensus 304 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I 383 (501)
.|-|=+||.. +....+++...|+..+..+-..+..-.. .|+.+.+ ++...+- ..+++ ||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR------~p~~l~~----------~~~~~~~-~~~~v--iI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR------TPERLLE----------FVKEYEA-RGADV--II 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT------SHHHHHH----------HHHHTTT-TTESE--EE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC------CHHHHHH----------HHHHhcc-CCCEE--EE
Confidence 4555566653 5667788888888888766555543332 3443321 1111000 12344 88
Q ss_pred eccCch----hHHHhhhcCCceEecCCCCchhh----hHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHH
Q 010775 384 THCGWN----SIVESLCSGVPMICWPFTGDQPT----NGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQM 455 (501)
Q Consensus 384 ~HGG~g----s~~eal~~GvP~v~~P~~~DQ~~----na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~ 455 (501)
.=.|.. ++..++- -+|+|.+|....+.. ....+.--.|+++..-..++..++..++..|- .+.|++ +
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~IL-a~~d~~---l 135 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARIL-ALKDPE---L 135 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHH-HTT-HH---H
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHH-hcCCHH---H
Confidence 887764 3333333 689999998776443 22223122366554422101222222332222 234666 8
Q ss_pred HHHHHHHHHHHHH
Q 010775 456 RNKAMEWKGLAEE 468 (501)
Q Consensus 456 r~~a~~~~~~~~~ 468 (501)
+++.+.+++..++
T Consensus 136 ~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 136 REKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888888887764
No 242
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=47.07 E-value=76 Score=31.43 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=58.7
Q ss_pred CCceEEEeeccc--c--ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhcc----CC-eeeccc--C
Q 010775 301 PKSVIYVNFGSF--I--FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE----KG-FVASWC--P 369 (501)
Q Consensus 301 ~~~~V~vs~Gs~--~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~----n~-~~~~~v--p 369 (501)
+++.|.+..|+. . ..+.+.+.++++.+...+.++++.-+..+.+ ....+....+. ++ -+.+-. .
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~-----~~~~i~~~~~~~~~~~~~~l~g~~sL~ 253 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHE-----AGNEILAALNTEQQAWCRNLAGETQLE 253 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHH-----HHHHHHHhcccccccceeeccCCCCHH
Confidence 456888888874 2 4567888888888876677766543221110 11111111211 11 223333 3
Q ss_pred h-HHhhcCCCccceEeccCchhHHHhhhcCCceEec
Q 010775 370 Q-EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 404 (501)
Q Consensus 370 q-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 404 (501)
+ .+++.++++ ||+- -.|-+|=|.+.|+|+|++
T Consensus 254 el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 254 QAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 3 348889998 8864 458999999999999974
No 243
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=46.42 E-value=27 Score=36.10 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=58.4
Q ss_pred CccCHHHHHHHHHHHHhC--------CCE----EEEEe---CCcch----HHHhhhhCCCCCCCCCCeeEEeCCCCCCCC
Q 010775 20 FQSHIKAMLKLAKLLHHK--------GFH----ITFVN---TEFNH----RRLLKARGQHSLDGLPSFRFEAIPDGLPAS 80 (501)
Q Consensus 20 ~~GH~~p~l~La~~L~~r--------GH~----Vt~~~---~~~~~----~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 80 (501)
+.|.+--.+.+|++|.+. |-+ |.++| +...- ..+++ .....+.....+|=+-..+
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~------~~gt~~a~IlRvPF~~~~g 368 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEK------VSGTENARILRVPFGPEKG 368 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEE------ETTESSEEEEEE-ESESTE
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccc------cCCCCCcEEEEecCCCCcc
Confidence 347777889999998653 544 55555 11110 01111 1122344555555111100
Q ss_pred -CCCCCCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEecc
Q 010775 81 -SDESPTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~--~~~~~A~~lgiP~v~~~~~ 153 (501)
...+-...+++.+++.+.... . .++++++. .+||+|+..+.-. .|..+++++|||.+.+-.+
T Consensus 369 i~~kwisrf~lWPyLe~fa~d~-~---~~i~~e~~-------~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 369 ILRKWISRFDLWPYLEEFADDA-E---REILAELQ-------GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp EE-S---GGG-GGGHHHHHHHH-H---HHHHHHHT-------S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred hhhhccchhhchhhHHHHHHHH-H---HHHHHHhC-------CCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 001334456777777776654 2 34444443 3899999664332 6888999999999998554
No 244
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=45.95 E-value=76 Score=28.38 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=48.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeC-CcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcc
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNT-EFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQ 88 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (501)
.++-+=..+.|-++-...|+++|.++ |+.|.+-++ +...+.+.+...+ .+....+| .+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-------~v~~~~~P----~D-------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-------RVDVQYLP----LD-------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-------G-SEEE-------S--------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-------CeEEEEeC----cc--------
Confidence 34444446789999999999999987 898887664 3444444433110 12222233 11
Q ss_pred cHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEE-cC-CcchHHHHHHHcCCCeEEE
Q 010775 89 DAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIIS-DG-FLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~-D~-~~~~~~~~A~~lgiP~v~~ 150 (501)
. ...++++++.+ +||++|. +. +.+.-+..|++.|||++.+
T Consensus 83 ------------~-~~~~~rfl~~~---------~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 83 ------------F-PWAVRRFLDHW---------RPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp ------------S-HHHHHHHHHHH-----------SEEEEES----HHHHHH-----S-EEEE
T ss_pred ------------C-HHHHHHHHHHh---------CCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 0 12345567776 6777773 33 3445677889999999998
No 245
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.82 E-value=2.1e+02 Score=31.76 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=31.0
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 10 KVHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 10 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
+.|+++++.. +.|-..-...||..|+..|++|.++-....
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3466666655 458888899999999999999999976443
No 246
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=45.78 E-value=37 Score=32.83 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=38.6
Q ss_pred cCCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 375 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 375 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
..+++ +|+.||-||+.++++. ++|++.+-. - .+| .+ ...+.+++.++|.++++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~------------G--~lG-FL----~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH------------G--RLG-FI----TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC------------C--Ccc-cc----ccCCHHHHHHHHHHHHcCC
Confidence 34667 9999999999999774 567665542 1 123 22 3567788888888888765
No 247
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=45.66 E-value=30 Score=30.97 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 678888788887777789999999999999999886654
No 248
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=45.63 E-value=1.8e+02 Score=27.75 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=55.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHH
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYS 92 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 92 (501)
|++.-.|+.|-..-...|++.|.+.|.+|.++..+... +.+ . .+. . . .
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~-----------~--------~y~-~------~----~ 51 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDR-----------N--------DYA-D------S----K 51 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TT-----------S--------SS---------G----G
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cch-----------h--------hhh-c------h----h
Confidence 67788899999999999999999999999998743222 110 0 000 0 0 0
Q ss_pred HHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc------hHHHHHHHcCCCeEEEeccchhHHH
Q 010775 93 LGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP------FTITAAQQLGLPIVLFFTISACSFM 159 (501)
Q Consensus 93 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~------~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (501)
..+...... ...+++.+. +-++||+|...+ -...+|+..+.+++.++........
T Consensus 52 ~Ek~~R~~l-~s~v~r~ls-----------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 52 KEKEARGSL-KSAVERALS-----------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC 112 (270)
T ss_dssp GHHHHHHHH-HHHHHHHHT-----------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred hhHHHHHHH-HHHHHHhhc-----------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence 122222222 334444432 228999999876 2467999999999887665554433
No 249
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.62 E-value=1.3e+02 Score=29.57 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
+-.|+++-.++.|-..-...||..|..+|+.|.+++...++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 34566666668899999999999999999999999876654
No 250
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=45.35 E-value=66 Score=33.05 Aligned_cols=36 Identities=17% Similarity=0.026 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
+.||||++-.+++-| +|++.|++-++-..+++.+.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 358999999999888 689999998865555554444
No 251
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=44.74 E-value=3.3e+02 Score=27.07 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=62.1
Q ss_pred cCCee-ecccChH---HhhcCCCccceEec--cCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCC
Q 010775 360 EKGFV-ASWCPQE---EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 433 (501)
Q Consensus 360 ~n~~~-~~~vpq~---~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~ 433 (501)
+|+.+ .+++|.. ++|..|+++-|.|. =|+|++.-.++.|+|+++- .+-++|-... ++ |+=+.... +.
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~~-~ipVlf~~--d~ 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-EQ-GIPVLFYG--DE 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-hC-CCeEEecc--cc
Confidence 46654 6788865 48999999666654 5899999999999999873 3444555544 44 77777766 89
Q ss_pred ccHHHHHHHHHHHhc
Q 010775 434 VIRNEVEKLVREMME 448 (501)
Q Consensus 434 ~~~~~l~~ai~~vl~ 448 (501)
++...++++=+++..
T Consensus 318 L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 LDEALVREAQRQLAN 332 (360)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999988765
No 252
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.62 E-value=2.2e+02 Score=24.98 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcc-hHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcchH
Q 010775 27 MLKLAKLLHHKGFHITFVNTEFN-HRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLHP 105 (501)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (501)
+..+.+...++|..|.+++.... .+.+.+... ..++++++....+++-. ...
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~----~~yP~l~ivg~~~g~f~-----------------------~~~ 89 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR----RRYPGLRIVGYHHGYFD-----------------------EEE 89 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH----HHCCCeEEEEecCCCCC-----------------------hhh
Confidence 45566666778999999987542 222222111 23557777765432111 123
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHHHHcCCCeEEEeccchhH
Q 010775 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLP----FTITAAQQLGLPIVLFFTISACS 157 (501)
Q Consensus 106 l~~ll~~l~~~~~~~~~~~DlVi~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~ 157 (501)
.+++++.++++ +||+|++-.-.+ |.....+.++.+ +.+....++.
T Consensus 90 ~~~i~~~I~~~------~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 90 EEAIINRINAS------GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
Confidence 34455555554 999999987777 677778888888 5554444433
No 253
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=44.29 E-value=1.4e+02 Score=29.78 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=65.5
Q ss_pred HHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEe------ccCchhHH
Q 010775 321 IEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLT------HCGWNSIV 392 (501)
Q Consensus 321 ~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~------HGG~gs~~ 392 (501)
...+.++...+ ..++.+...+.. -...+.++ .-+.-|-...+++..+++.++.. +-+.--+.
T Consensus 15 ~~h~~al~~~~~~~eLvaV~d~~~e------rA~~~A~~----~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~ 84 (343)
T TIGR01761 15 QFYLAAFAAAPERFELAGILAQGSE------RSRALAHR----LGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALAR 84 (343)
T ss_pred HHHHHHHHhCCCCcEEEEEEcCCHH------HHHHHHHH----hCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHH
Confidence 34556666654 456665553211 01122222 22335677888888888877774 23345677
Q ss_pred HhhhcCCceEe-cCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 393 ESLCSGVPMIC-WPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 393 eal~~GvP~v~-~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
+++.+|+.+++ -|+..++-.-...++++.|+=+.+ ..+. .-..+++++++..
T Consensus 85 ~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v----~~f~--p~~~~vr~~i~~~ 137 (343)
T TIGR01761 85 ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV----NTFY--PHLPAVRRFIEYA 137 (343)
T ss_pred HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE----EecC--HHHHHHHHHHHcc
Confidence 89999999999 899866655555555655554444 2322 2334455555444
No 254
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=44.12 E-value=2.5e+02 Score=29.36 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
..-+++.-.++.|-..-.+.++...+++|..|.+++.+...+.+..
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 3467777778889999999999999999999999998877666654
No 255
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.98 E-value=44 Score=31.85 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=37.6
Q ss_pred CCCccceEeccCchhHHHhhh------cCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcC
Q 010775 376 HPSIGGFLTHCGWNSIVESLC------SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 449 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~------~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~ 449 (501)
.+++ +|+-||-||+..+++ .++|++.+-. - .+|.- .+.+.+++.+++.+++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL-----~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFY-----TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceec-----ccCCHHHHHHHHHHHHcC
Confidence 3566 999999999999976 4788877643 1 12221 345667788888888775
Q ss_pred h
Q 010775 450 E 450 (501)
Q Consensus 450 ~ 450 (501)
+
T Consensus 94 ~ 94 (265)
T PRK04885 94 P 94 (265)
T ss_pred C
Confidence 4
No 256
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.62 E-value=45 Score=32.26 Aligned_cols=57 Identities=14% Similarity=0.333 Sum_probs=40.8
Q ss_pred hhcCCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 373 VLKHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 373 lL~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
+...+++ +|+=||-||+..+.+. ++|++.+-... +| .+ ..++.+++.+++.++++
T Consensus 61 ~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lG-FL----t~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 61 LDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR--------------LG-FL----ATVSKEEIEETIDELLN 119 (292)
T ss_pred cccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC--------------CC-cc----cccCHHHHHHHHHHHHc
Confidence 3345677 9999999999999773 67877654311 23 22 45778889999999987
Q ss_pred Ch
Q 010775 449 GE 450 (501)
Q Consensus 449 ~~ 450 (501)
++
T Consensus 120 g~ 121 (292)
T PRK01911 120 GD 121 (292)
T ss_pred CC
Confidence 65
No 257
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=43.47 E-value=1.7e+02 Score=23.47 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 23 HIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 23 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
+=.-++.+|+.|.+.|+++ ++++.....+.+.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~ 41 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA 41 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc
Confidence 4455789999999999988 3455556666553
No 258
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=43.25 E-value=25 Score=31.46 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 010775 27 MLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
-..||+++.++||+||++..+.
T Consensus 32 G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHHCCCEEEEEecCc
Confidence 4789999999999999999864
No 259
>PRK10867 signal recognition particle protein; Provisional
Probab=43.21 E-value=72 Score=32.84 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHH
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRR 52 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~ 52 (501)
+..|+++-.++.|-..-...||..|+++ |+.|.+++...++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 4566677777889999999999999999 999999998766653
No 260
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=43.20 E-value=2.9e+02 Score=30.42 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=28.6
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 12 HAVCIPSPF-QSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 12 ~il~~~~~~-~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
.|++.+..+ .|-..-.+.|++.|.++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 455665554 49999999999999999999999754
No 261
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=43.17 E-value=1.3e+02 Score=25.55 Aligned_cols=28 Identities=14% Similarity=0.371 Sum_probs=22.4
Q ss_pred CCccceEeccCch------hHHHhhhcCCceEecCC
Q 010775 377 PSIGGFLTHCGWN------SIVESLCSGVPMICWPF 406 (501)
Q Consensus 377 ~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 406 (501)
+.+ +++|+|-| .+.++...++|+|++.-
T Consensus 60 ~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 455 89997754 67888999999999853
No 262
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=43.12 E-value=2.4e+02 Score=31.47 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=30.4
Q ss_pred cEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 11 VHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 11 ~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
.|++.++.. +.|-..-...||..|++.|++|.++-....
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 355555444 569999999999999999999999876544
No 263
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=43.00 E-value=1.3e+02 Score=28.41 Aligned_cols=40 Identities=13% Similarity=-0.014 Sum_probs=33.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
--+++.-.|+.|-..-.+.++...+++|..|.|++.+...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 4566677778899999999999998899999999987533
No 264
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=42.90 E-value=92 Score=32.28 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=27.0
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 13 AVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 13 il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
|++.... ..|-..-...|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 3444334 348899999999999999999999865
No 265
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=42.39 E-value=2.6e+02 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=30.7
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 12 HAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 12 ~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
++-|+..+ ..|-..-++.-++....+|-.|.++++.-.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 45555544 449999999999999999999999998643
No 266
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=41.98 E-value=99 Score=27.04 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhCCC--------CChHHHHHHHHHHHHhc-CCCCCCCCCC
Q 010775 455 MRNKAMEWKGLAEEAAAPH--------GSSSLNLDKLVNEILLS-NKHNSSIPSA 500 (501)
Q Consensus 455 ~r~~a~~~~~~~~~~~~~g--------g~~~~~~~~li~~~~~~-~~~~~~~~~~ 500 (501)
+.+..++.++++.++...| |.|..+...|..++... ...|.+||++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaI 77 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAI 77 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCee
Confidence 4555555555555544444 66688888888888765 8888899985
No 267
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=41.64 E-value=37 Score=28.49 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=28.1
Q ss_pred EEcCCCc-cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 15 CIPSPFQ-SHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 15 ~~~~~~~-GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
++-+|.. -.+.-.+=++..|.++||+|++.+++.....++-+
T Consensus 3 lLGCPe~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 3 LLGCPEVPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp E---S-STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 3444433 34445778899999999999999998877766554
No 268
>PRK10490 sensor protein KdpD; Provisional
Probab=41.50 E-value=36 Score=38.77 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
++||.+=..|+-|-..-|+.-|++|+++|++|.+---+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 58999999999999999999999999999999875433
No 269
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=41.49 E-value=1.4e+02 Score=29.13 Aligned_cols=131 Identities=11% Similarity=-0.069 Sum_probs=73.8
Q ss_pred ceEE-Eeecccc--ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecc--cCh-HHhhcC
Q 010775 303 SVIY-VNFGSFI--FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW--CPQ-EEVLKH 376 (501)
Q Consensus 303 ~~V~-vs~Gs~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~--vpq-~~lL~~ 376 (501)
+.|. +-.||.. ..+.+.+.++++.+...+.++++..++... .. ..+.+.+. ..++.+.+- +.+ ..++.+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-~~---~~~~i~~~-~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-EQ---RAKRLAEG-FPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-HH---HHHHHHcc-CCcceecCCCCHHHHHHHHHh
Confidence 3444 4444443 467788888888887667776654442210 00 11111111 112333332 333 348899
Q ss_pred CCccceEeccCchhHHHhhhcCCceEecCCCCchhh------hHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 377 PSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPT------NGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 377 ~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~------na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
+++ +|+-- .|.+|=|.+.|+|+|++=-..|... +...+ .. .+. .. ..+++|.+-++++++|+
T Consensus 254 a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~~--~~~--cm--~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 254 AKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-RS--PGK--SM--ADLSAETVFQKLETLIS 321 (322)
T ss_pred CCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-cC--CCc--cc--ccCCHHHHHHHHHHHhh
Confidence 998 99765 4899999999999998522222111 11111 10 111 12 68999999999988774
No 270
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=40.50 E-value=35 Score=35.44 Aligned_cols=55 Identities=9% Similarity=0.201 Sum_probs=39.5
Q ss_pred cCCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 375 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 375 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
..+++ +|+=||-||+..+.+. ++|++.+ |.-+ +|. + ..++.+++.++|.+++.++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G~------LGF-L----t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMGS------LGF-M----TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCCC------cce-e----cccCHHHHHHHHHHHHcCC
Confidence 35667 9999999999999774 4576654 2111 333 3 4578899999999998865
No 271
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=40.48 E-value=65 Score=26.13 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
++....++..|-....-++..|.++|++|.++......+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5667778889999999999999999999999986554444433
No 272
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=40.45 E-value=94 Score=31.93 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcchHH
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRR 52 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~ 52 (501)
+..++++..++.|-..-...||..|. ++|..|.+++...++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 34667777778899999999999997 68999999998866653
No 273
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.62 E-value=3e+02 Score=26.86 Aligned_cols=98 Identities=14% Similarity=0.224 Sum_probs=57.1
Q ss_pred EEEEEcCCCcc---C--HHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCC
Q 010775 12 HAVCIPSPFQS---H--IKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT 86 (501)
Q Consensus 12 ~il~~~~~~~G---H--~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 86 (501)
-|++.|..+.| + ..-+.+|++.|.+.|.+|.+++++...+..+.... . .+....
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~--------~-----~~~~~~-------- 234 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA--------L-----LPGELR-------- 234 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH--------h-----CCcccc--------
Confidence 45565544333 1 23588999999988999999988766554433210 0 000000
Q ss_pred cccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEec
Q 010775 87 AQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (501)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~ 152 (501)
.+.. ...+.++..-+. +.|++|+.-. ....+|..+|+|+|.++.
T Consensus 235 ---------~l~g---~~sL~el~ali~--------~a~l~I~~DS--Gp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 235 ---------NLAG---ETSLDEAVDLIA--------LAKAVVTNDS--GLMHVAAALNRPLVALYG 278 (334)
T ss_pred ---------cCCC---CCCHHHHHHHHH--------hCCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 0000 113344444443 4499996532 567899999999999854
No 274
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=39.61 E-value=31 Score=35.82 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=41.2
Q ss_pred hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcChhhHHHHHHHH
Q 010775 390 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAM 460 (501)
Q Consensus 390 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~ 460 (501)
++.||+++|+|+|+.=-.+ =+..+ ...--|.-.+. ..-....+++++.++..|++ ++.++.
T Consensus 381 v~IEAMa~glPvvAt~~GG----P~EiV-~~~~tG~l~dp--~~e~~~~~a~~~~kl~~~p~---l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGG----PAEIV-VHGVTGLLIDP--GQEAVAELADALLKLRRDPE---LWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEecCCC----ceEEE-EcCCcceeeCC--chHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence 7899999999998764332 33334 44345777653 33333379999999999997 655543
No 275
>PLN02929 NADH kinase
Probab=39.53 E-value=49 Score=32.13 Aligned_cols=66 Identities=8% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCCccceEeccCchhHHHhhh---cCCceEecCCCC------chhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHH
Q 010775 376 HPSIGGFLTHCGWNSIVESLC---SGVPMICWPFTG------DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 446 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~v 446 (501)
.+++ +|+-||-||+..+.+ .++|++++=... .++.+... +..-+|.- -..+.+++.++|.++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL-----~~~~~~~~~~~L~~i 134 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHL-----CAATAEDFEQVLDDV 134 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCcccc-----ccCCHHHHHHHHHHH
Confidence 4566 999999999999855 468988876532 12223221 11134533 356789999999999
Q ss_pred hcCh
Q 010775 447 MEGE 450 (501)
Q Consensus 447 l~~~ 450 (501)
++++
T Consensus 135 l~g~ 138 (301)
T PLN02929 135 LFGR 138 (301)
T ss_pred HcCC
Confidence 9865
No 276
>PRK11823 DNA repair protein RadA; Provisional
Probab=39.03 E-value=1e+02 Score=31.95 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=36.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 54 (501)
--+++.--++.|-..-++.++..++++|..|.|++.+...+.+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 35566667788999999999999998999999999887665553
No 277
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.51 E-value=78 Score=30.72 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=40.8
Q ss_pred hhcCCCccceEeccCchhHHHhhh----cCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 373 VLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 373 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
+...+++ +|+=||-||+..+.+ .++|++.+-.. .+|.- ..++.+++.+++.++++
T Consensus 65 ~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL-----~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 65 LGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFL-----TQIPREYMTDKLLPVLE 123 (296)
T ss_pred cCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEe-----eccCHHHHHHHHHHHHc
Confidence 3345677 999999999999975 36788776431 13322 35678889999999987
Q ss_pred Ch
Q 010775 449 GE 450 (501)
Q Consensus 449 ~~ 450 (501)
++
T Consensus 124 g~ 125 (296)
T PRK04539 124 GK 125 (296)
T ss_pred CC
Confidence 65
No 278
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.46 E-value=54 Score=31.82 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=39.6
Q ss_pred CCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 376 HPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
.+++ +|+=||-||+.++++. ++|++.+... .+| .+ ...+.+++.++|.++++++
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lG-Fl----~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLG-FL----TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------ccc-cc----ccCCHHHHHHHHHHHHcCC
Confidence 4566 9999999999999753 6677776541 123 22 4577899999999998754
No 279
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=38.46 E-value=2.3e+02 Score=26.22 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=23.6
Q ss_pred CeeEEEE-cCCcc-hHHHHHHHcCCCeEEEecc
Q 010775 123 AVSCIIS-DGFLP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 123 ~~DlVi~-D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
.||+||+ |+.-- .++.=|.++|||+|.++-+
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDT 187 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDT 187 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeC
Confidence 6898884 54333 5777899999999998655
No 280
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=38.45 E-value=45 Score=32.20 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
|||+++-.|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888877777 4678889999999999986
No 281
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=38.03 E-value=54 Score=31.04 Aligned_cols=36 Identities=6% Similarity=-0.066 Sum_probs=31.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
|+|.++.=|+-|-..-...||..|+++|++|.++=-
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 567788777889999999999999999999998843
No 282
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=37.63 E-value=60 Score=29.06 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHhh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHH-KGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~ 55 (501)
||++.-.|+-| ..=...+.++|.+ .||+|+++.++.....+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 68777778777 5558999999999 5999999999877776654
No 283
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=37.54 E-value=26 Score=32.90 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 23 HIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 23 H~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
=-.-.-.|+++|+++||+|+++.|..
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 33457789999999999999999854
No 284
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=37.50 E-value=60 Score=31.40 Aligned_cols=38 Identities=5% Similarity=0.003 Sum_probs=33.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
|||.+.-=|+.|-..-...||..|+++|++|.++--..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 67888888999999999999999999999999886543
No 285
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=37.48 E-value=3.8e+02 Score=26.95 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=34.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
-+++.--++.|-..-++.+|..+++.|..|.|++.+...+.+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 456666678899999999999999999999999887655544
No 286
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=37.48 E-value=55 Score=31.01 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=32.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
|.|.+..=|+-|...-...||..|+++|++|.++=-.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5778887788899999999999999999999988543
No 287
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=37.43 E-value=60 Score=31.97 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.1
Q ss_pred CeeEEEEcCCcch------H----HHHHHHcCCCeEEE
Q 010775 123 AVSCIISDGFLPF------T----ITAAQQLGLPIVLF 150 (501)
Q Consensus 123 ~~DlVi~D~~~~~------~----~~~A~~lgiP~v~~ 150 (501)
+||+||+-+.+.+ + ..+.++++||.+.-
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999986651 1 22457899999975
No 288
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=37.32 E-value=47 Score=29.47 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 54 (501)
||++.-.|+.|=. -...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~~a~-~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIAAY-KAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHHHH-HHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 6777776766544 55699999999999999999877665543
No 289
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.31 E-value=45 Score=29.45 Aligned_cols=32 Identities=13% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCCccceEeccCchhHHHhhhcCCceEecCCCC
Q 010775 376 HPSIGGFLTHCGWNSIVESLCSGVPMICWPFTG 408 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~ 408 (501)
+..+..+|++||...+..... ++|+|-+|..+
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 344444999999998888877 99999999854
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=37.19 E-value=44 Score=34.30 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=32.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
|.|..+..++.||+++- ++.+++ ..|+.|.+.+++||++.+..+.
T Consensus 1 ~~~~~~~~~~~~vVIvG-gG~aGl----~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLG-TGWAGA----YFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCcccCCCCCeEEEEC-CCHHHH----HHHHHhCcCCCeEEEEcCCCCc
Confidence 66777767778999988 445444 4578887778999999875543
No 291
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=37.17 E-value=1.6e+02 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCC--CCCCCC
Q 010775 24 IKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPAS 80 (501)
Q Consensus 24 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~--~~~~~~ 80 (501)
=.-++.+|+.|.+.|.++. +++.....+.+. |+.+..+. .++|+.
T Consensus 14 K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~----------GI~v~~V~k~TgfpEi 60 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL--STGGTAKLLAEA----------GIPVTEVSDVTGFPEI 60 (513)
T ss_pred cccHHHHHHHHHHCCCEEE--EcchHHHHHHHC----------CCeeEEeecccCCchh
Confidence 3447899999999999984 556677777665 67666665 367776
No 292
>PRK12342 hypothetical protein; Provisional
Probab=37.11 E-value=62 Score=30.62 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=24.1
Q ss_pred CeeEEEEcCCcc------hHHHHHHHcCCCeEEEecc
Q 010775 123 AVSCIISDGFLP------FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 123 ~~DlVi~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (501)
+||+|++-.-.. -+..+|+.||+|++.....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 789999654332 4789999999999997543
No 293
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=37.09 E-value=1.6e+02 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
+++.-.++.|-......++..|++.|..|.++....++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 566677788999999999999999999999999776543
No 294
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=36.99 E-value=2.3e+02 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=21.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC--CEEEEEeC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNT 46 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~ 46 (501)
+||+++.++..+=+. ++.+.+.+.+ ++|.++.+
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs 36 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVIS 36 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEe
Confidence 588998877644433 5566676654 77776544
No 295
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=36.70 E-value=45 Score=32.54 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
.+|+|+++-.|+.|= .+|..|++.||+|++++...
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 357999998888884 56788999999999998754
No 296
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.47 E-value=72 Score=29.33 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=63.5
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCc-chHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHH
Q 010775 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEF-NHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENII 98 (501)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (501)
+..|+...+.++..++.+|=.+.|+++.. +.+.++.+..+ .+...+.-..++..+... ...+....
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r---~~gy~~~~~w~~G~lTN~----------~~l~g~~~ 156 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARR---AGGYSHNRKWLGGLLTNA----------RELFGALV 156 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHH---hcCceeeeeeccceeecc----------hhhccccc
Confidence 44788888999999999999999999874 45555554321 111111112223222222 11111111
Q ss_pred Hhhc-chHHHHHHHHhhcCCCCCCCCeeEEEE-cCCcc-hHHHHHHHcCCCeEEEeccch
Q 010775 99 NNVL-LHPFLDLLAKLNDSSNSVNPAVSCIIS-DGFLP-FTITAAQQLGLPIVLFFTISA 155 (501)
Q Consensus 99 ~~~~-~~~l~~ll~~l~~~~~~~~~~~DlVi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 155 (501)
+..+ .+....++..+ .+||||+ |..-. .++.=|.+++||.|.+.=+.+
T Consensus 157 ~~~~~~pd~~~f~~t~---------~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 157 RKFLSLPDALCFLPTL---------TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred ccccCCCcceeecccC---------CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 1110 12222333332 5688885 55444 677889999999999865543
No 297
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.41 E-value=63 Score=21.30 Aligned_cols=26 Identities=15% Similarity=0.437 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 010775 435 IRNEVEKLVREMMEGEKGKQMRNKAMEW 462 (501)
Q Consensus 435 ~~~~l~~ai~~vl~~~~~~~~r~~a~~~ 462 (501)
|+++|..||..+.++.- .+++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~~--S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKM--SIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 57899999999998732 277776654
No 298
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=36.40 E-value=1.4e+02 Score=31.71 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 010775 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (501)
...+..++.+.+. ++++||.|. .+..+|+++|++.+.+.+.
T Consensus 132 ~e~~~~~~~l~~~------G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRAR------GIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHC------CCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 4567777777765 999999996 4678999999999998663
No 299
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=36.20 E-value=2.7e+02 Score=26.73 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
.++|+++-.|..|.. +|+.|.++||.|.++.........+..
T Consensus 3 ~~~v~IvG~GliG~s-----~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGGS-----LARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHHH-----HHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 468899988888864 799999999999999988777665543
No 300
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=36.17 E-value=60 Score=30.72 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=24.0
Q ss_pred CeeEEEEcCC-----cc-hHHHHHHHcCCCeEEEecc
Q 010775 123 AVSCIISDGF-----LP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 123 ~~DlVi~D~~-----~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
+||+|++-.- +. -+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 7899996433 22 5788999999999997554
No 301
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.08 E-value=1.7e+02 Score=28.82 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=60.5
Q ss_pred cEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010775 11 VHAVCIPSPFQS-----HIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP 85 (501)
Q Consensus 11 ~~il~~~~~~~G-----H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 85 (501)
..|++.|..+.| -..-+..|++.|.++|.+|.+++++...+..++... .++.. ..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-----------------~~~~~--~~- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-----------------GLPNA--VI- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-----------------hcCCc--cc-
Confidence 467777763442 234689999999999999999988755554443311 01100 00
Q ss_pred CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 010775 86 TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (501)
+.. ...+.++..-+. +.|+||+.. .....+|..+|.|+|.++..
T Consensus 236 -----------l~~---k~sL~e~~~li~--------~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 236 -----------LAG---KTSLEELAALIA--------GADLVIGND--SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred -----------cCC---CCCHHHHHHHHh--------cCCEEEccC--ChHHHHHHHcCCCEEEEECC
Confidence 000 123444444443 559988653 25678999999999999654
No 302
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=36.07 E-value=1.1e+02 Score=27.41 Aligned_cols=77 Identities=8% Similarity=-0.035 Sum_probs=45.6
Q ss_pred ecCCCCchhhhHHhhhhhhcceeeecCC----C------CCccHHHHH----HHHHHHhcChh-------hHHHHHHHHH
Q 010775 403 CWPFTGDQPTNGRYVCNEWGVGMEINGD----D------EDVIRNEVE----KLVREMMEGEK-------GKQMRNKAME 461 (501)
Q Consensus 403 ~~P~~~DQ~~na~rv~~~~g~G~~l~~~----~------~~~~~~~l~----~ai~~vl~~~~-------~~~~r~~a~~ 461 (501)
++|...||...-..+-|-...|++.... + ..++++.++ +.|.+++.|+. -++..+||+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~ 101 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARA 101 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHH
Confidence 4566888888777765666677665421 1 456666665 66778888875 1233444444
Q ss_pred HHHHHHHHhCCCCChHHHHHHH
Q 010775 462 WKGLAEEAAAPHGSSSLNLDKL 483 (501)
Q Consensus 462 ~~~~~~~~~~~gg~~~~~~~~l 483 (501)
+.++.+ ++||-.+.+=.+
T Consensus 102 ~l~i~~----e~gSf~~ylW~f 119 (187)
T PRK10353 102 YLQMEQ----NGEPFADFVWSF 119 (187)
T ss_pred HHHHHH----hcCCHHHHHhhc
Confidence 444444 356655555433
No 303
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=36.04 E-value=1.7e+02 Score=28.13 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCEEEEEeCCcch
Q 010775 28 LKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 28 l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
.++|..++++|++|.+++.....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46889999999999999986544
No 304
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=36.00 E-value=47 Score=32.11 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
|||+++-.|+.|. .+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEec
Confidence 6788888777764 578889999999999987
No 305
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=35.67 E-value=55 Score=27.93 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=68.9
Q ss_pred eEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc----C--------
Q 010775 382 FLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME----G-------- 449 (501)
Q Consensus 382 ~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~----~-------- 449 (501)
.-.=|+--||.|-+----|+|+-.-..-++++...+ .. |+-....+ ..++.+.|..++..+-. .
T Consensus 31 C~~C~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl-~~-gl~~A~~K--RpVs~e~ie~~v~~ie~~Lr~~g~~EV~S~ 106 (156)
T COG1327 31 CLECGERFTTFERAELRPLIVVKKDGRREPFDREKL-RR-GLIRACEK--RPVSSEQIEEAVSHIERQLRSSGEREVPSK 106 (156)
T ss_pred ccccccccchhheeeeccceEECcCCCcCCCCHHHH-HH-HHHHHHhc--CCCCHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 333455679999998888999999999999999998 44 88888888 89999999999977632 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010775 450 EKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 491 (501)
Q Consensus 450 ~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~~ 491 (501)
.-|+..-+..+++-+.+---++.=..+.+.+.+|.++|.+..
T Consensus 107 ~IG~~VM~~Lk~lD~VAYvRFASVYr~F~dv~~F~e~i~~l~ 148 (156)
T COG1327 107 EIGELVMEELKKLDEVAYVRFASVYRSFKDVDDFEEEIEELT 148 (156)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhHhcccCCHHHHHHHHHHHH
Confidence 113333333333332221111112344556667766666543
No 306
>CHL00067 rps2 ribosomal protein S2
Probab=35.65 E-value=2.4e+02 Score=26.18 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=24.0
Q ss_pred CeeEEEEcCCcc--hHHHHHHHcCCCeEEEeccc
Q 010775 123 AVSCIISDGFLP--FTITAAQQLGLPIVLFFTIS 154 (501)
Q Consensus 123 ~~DlVi~D~~~~--~~~~~A~~lgiP~v~~~~~~ 154 (501)
.||+||+-...- .++.=|.++|||+|.++-+.
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 688888544333 57778999999999986653
No 307
>PRK06849 hypothetical protein; Provisional
Probab=35.49 E-value=71 Score=32.28 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
.+++||++-. ...-.+.+|+.|.++||+|+++....
T Consensus 3 ~~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGA----RAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678888752 22358999999999999999998754
No 308
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=35.46 E-value=62 Score=28.61 Aligned_cols=40 Identities=8% Similarity=-0.066 Sum_probs=29.3
Q ss_pred EEEcCCCccCHHH-HHHHHHHHH-hCCCEEEEEeCCcchHHHh
Q 010775 14 VCIPSPFQSHIKA-MLKLAKLLH-HKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 14 l~~~~~~~GH~~p-~l~La~~L~-~rGH~Vt~~~~~~~~~~~~ 54 (501)
+..-.|+ ||... ...+.+.|+ ++||+|.++-++...+.+.
T Consensus 3 ~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 3 AWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 3333343 78766 889999998 4599999999977765544
No 309
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.37 E-value=1.1e+02 Score=25.57 Aligned_cols=40 Identities=10% Similarity=0.038 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
++.||++...+..+|-..---++..|...|++|...+...
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~ 40 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQ 40 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 3679999999999999999999999999999999987643
No 310
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.22 E-value=44 Score=29.51 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred cCHHHHHHHHHHH-HhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCC----------CCCCCCCC------C
Q 010775 22 SHIKAMLKLAKLL-HHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD----------GLPASSDE------S 84 (501)
Q Consensus 22 GH~~p~l~La~~L-~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~----------~~~~~~~~------~ 84 (501)
+.+.=.+..|+.| .+.|.+|.+... ...+.+++.. ++.+..++- ........ .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~---------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV---------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC----------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC---------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 6777888999999 788999987554 4555565542 233333331 00111000 0
Q ss_pred CCcccHHHHHHHHHHhh----c--chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEeccc
Q 010775 85 PTAQDAYSLGENIINNV----L--LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTIS 154 (501)
Q Consensus 85 ~~~~~~~~~~~~~~~~~----~--~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (501)
....++..+...+--.. + ...++..+..+... ++|+||.+. .+..+|+++|+|++.+.++.
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~------G~~viVGg~---~~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE------GVDVIVGGG---VVCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT------T--EEEESH---HHHHHHHHTTSEEEESS--H
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc------CCcEEECCH---HHHHHHHHcCCcEEEEEecH
Confidence 01111222222220011 0 24567777777664 899999996 35789999999999986643
No 311
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.19 E-value=63 Score=31.50 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=40.1
Q ss_pred cCCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 375 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 375 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
..+++ +|+=||-||+..+.+. ++|++.+... .+|.- .....+++.+++.++++++
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL-----~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFL-----AEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCcee-----ccCCHHHHHHHHHHHHcCC
Confidence 34677 9999999999998764 7788877641 13322 3466788888998888765
No 312
>PLN02891 IMP cyclohydrolase
Probab=35.15 E-value=1.6e+02 Score=31.01 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=53.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCC--CCCCCCCCCCCcc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD--GLPASSDESPTAQ 88 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~--~~~~~~~~~~~~~ 88 (501)
.+.|+..+ +=.-...+|+.|.+.|.++ +++......+.+. |+.+..+.+ ++|+.. ..+.+
T Consensus 23 krALISVs----DKtgi~~fAk~L~~~gveI--iSTgGTak~L~e~----------Gi~v~~Vsd~TgfPEiL--~GRVK 84 (547)
T PLN02891 23 KQALISLS----DKTDLALLANGLQELGYTI--VSTGGTASALEAA----------GVSVTKVEELTNFPEML--DGRVK 84 (547)
T ss_pred cEEEEEEe----cccCHHHHHHHHHHCCCEE--EEcchHHHHHHHc----------CCceeeHHhccCCchhh--CCccc
Confidence 45555443 3344789999999988765 5666666666665 677777753 677762 22233
Q ss_pred cHH-HHHHHH-HHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcC
Q 010775 89 DAY-SLGENI-INNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDG 131 (501)
Q Consensus 89 ~~~-~~~~~~-~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~ 131 (501)
.+- .....+ .+.-...+++++ ++..- ...|+|+++-
T Consensus 85 TLHPkIhgGILa~r~~~~h~~~l-~~~~I------~~IDlVvVNL 122 (547)
T PLN02891 85 TLHPAVHGGILARRDQEHHMEAL-NEHGI------GTIDVVVVNL 122 (547)
T ss_pred ccCchhhhhhhcCCCCHHHHHHH-HHcCC------CceeeEEEec
Confidence 222 222222 222202334333 33322 3789999884
No 313
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.81 E-value=54 Score=28.98 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.1
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch--HHHHHHHcCCCeEEEe
Q 010775 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF--TITAAQQLGLPIVLFF 151 (501)
Q Consensus 103 ~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~--~~~~A~~lgiP~v~~~ 151 (501)
...++++++. +||+||....... ....-+..|||++.+.
T Consensus 59 ~~n~E~ll~l----------~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 59 SLNVELIVAL----------KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCHHHHhcc----------CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3566777654 9999998654432 4445578999998874
No 314
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.68 E-value=3.2e+02 Score=28.10 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.0
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~ 150 (501)
+||++|... ....+|+++|||++.+
T Consensus 377 ~pDliiG~s---~~~~~a~~~gip~v~~ 401 (435)
T cd01974 377 PVDLLIGNT---YGKYIARDTDIPLVRF 401 (435)
T ss_pred CCCEEEECc---cHHHHHHHhCCCEEEe
Confidence 899999986 4688999999999876
No 315
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=34.27 E-value=2.3e+02 Score=26.85 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=23.6
Q ss_pred CeeEEEE-cCCcc-hHHHHHHHcCCCeEEEecc
Q 010775 123 AVSCIIS-DGFLP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 123 ~~DlVi~-D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
.||+||+ |+.-- .++.=|.++|||+|.++-+
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDT 189 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDT 189 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeC
Confidence 6898884 54333 5777899999999998655
No 316
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=34.16 E-value=1.7e+02 Score=30.45 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 54 (501)
-+++.--++.|-..-++.++..+.++|+.|.|++.+...+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 4566666788999999999999999999999999876655543
No 317
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=34.07 E-value=2.4e+02 Score=22.40 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhh
Q 010775 22 SHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNV 101 (501)
Q Consensus 22 GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (501)
++-.-++.+++.|.+.|+++. +++...+.+.+. ++.+..+... .. .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~----------gi~~~~v~~~-~~---------------------~ 55 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA----------GIPVEVVNKV-SE---------------------G 55 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc----------CCeEEEEeec-CC---------------------C
Confidence 455678899999999999983 455555555543 5554443210 00 1
Q ss_pred cchHHHHHHHHhhcCCCCCCCCeeEEEEcCC-------cchHHHHHHHcCCCeEE
Q 010775 102 LLHPFLDLLAKLNDSSNSVNPAVSCIISDGF-------LPFTITAAQQLGLPIVL 149 (501)
Q Consensus 102 ~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~-------~~~~~~~A~~lgiP~v~ 149 (501)
.+.+.+++++ .++|+||.-.- .+.-.-.|-.+|||++.
T Consensus 56 -~~~i~~~i~~---------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 -RPNIVDLIKN---------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -chhHHHHHHc---------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 2233444443 38899997431 23566779999999985
No 318
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.00 E-value=64 Score=31.48 Aligned_cols=55 Identities=11% Similarity=0.343 Sum_probs=39.5
Q ss_pred cCCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 375 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 375 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
..+++ +|+=||-||+..+.+. ++|++.+-. - .+|. + ..++.+++.+++.++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGF-L----t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGF-L----TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCcc-c----ccCCHHHHHHHHHHHHcCC
Confidence 34566 9999999999999774 778877633 1 1221 2 3566788899999988765
No 319
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.59 E-value=79 Score=30.62 Aligned_cols=57 Identities=11% Similarity=0.219 Sum_probs=39.5
Q ss_pred hhcCCCccceEeccCchhHHHhhh----cCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 373 VLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 373 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
+...+++ +|+=||-||+..+++ .++|++.+-... +|. + ..++++++.++++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~--------------lGF-l----~~~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN--------------LGF-L----TDLDPDNALQQLSDVLE 118 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC--------------CCc-c----cccCHHHHHHHHHHHHc
Confidence 3334666 999999999999975 366776654311 232 2 35667889999999987
Q ss_pred Ch
Q 010775 449 GE 450 (501)
Q Consensus 449 ~~ 450 (501)
+.
T Consensus 119 g~ 120 (292)
T PRK03378 119 GH 120 (292)
T ss_pred CC
Confidence 65
No 320
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.21 E-value=69 Score=32.46 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
+.||++.-.|+.|= .-...+.+.|.+.|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 45888888776665 4489999999999999999999876666543
No 321
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=33.06 E-value=3.3e+02 Score=27.98 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=22.5
Q ss_pred CCCccceEeccCch------hHHHhhhcCCceEec
Q 010775 376 HPSIGGFLTHCGWN------SIVESLCSGVPMICW 404 (501)
Q Consensus 376 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~ 404 (501)
++.+ +++|.|-| .+++|.+.++|+|++
T Consensus 63 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVA--VVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEE--EEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3555 99998865 678999999999998
No 322
>PRK13604 luxD acyl transferase; Provisional
Probab=33.03 E-value=86 Score=30.56 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFV 44 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~ 44 (501)
++..++++.+|..++-..+..+|+.|.++|..|..+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345778888888888777999999999999999876
No 323
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=33.00 E-value=3.5e+02 Score=23.93 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=28.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEE
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFV 44 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~ 44 (501)
--|.++.-.+.|-..-.+.+|-..+.+|+.|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 3566666688899999999999999999999766
No 324
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=32.70 E-value=1.8e+02 Score=26.54 Aligned_cols=46 Identities=15% Similarity=0.047 Sum_probs=35.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
--+++.-.++.|-..-.+.++..-+++|+.|.+++.+...+.+.+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 3555666678888888888888888889999999998776665543
No 325
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=32.60 E-value=86 Score=31.99 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=32.9
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 9 SKVHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 9 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
.+++|+.+.. |+.|-..-.+.||..|+.+|++|.++=...
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 4567777766 577999999999999999999999986443
No 326
>PRK14098 glycogen synthase; Provisional
Probab=32.44 E-value=66 Score=33.77 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=29.5
Q ss_pred CcEEEEEcCC------CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 10 KVHAVCIPSP------FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 10 ~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
.|||++++.- +.|=-...-+|.++|+++||+|.++.|..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4899998742 12334456789999999999999999853
No 327
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=32.30 E-value=75 Score=29.59 Aligned_cols=43 Identities=5% Similarity=-0.055 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHhh
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~ 55 (501)
|++--.|+.+=+.-.+.|.+.|.++ ||+|.++-++.....+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4444444444446889999999999 999999998776665543
No 328
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=32.10 E-value=1.5e+02 Score=25.94 Aligned_cols=29 Identities=10% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCCccceEeccCch------hHHHhhhcCCceEecCC
Q 010775 376 HPSIGGFLTHCGWN------SIVESLCSGVPMICWPF 406 (501)
Q Consensus 376 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 406 (501)
++.+ +++|.|-| ++.+|...++|+|++.-
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 4555 88888754 77889999999999864
No 329
>PLN02470 acetolactate synthase
Probab=32.04 E-value=1.3e+02 Score=32.26 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=54.1
Q ss_pred eecccccc--CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhc--cCCeeecccC-hHHh-------hc
Q 010775 308 NFGSFIFM--NKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFVASWCP-QEEV-------LK 375 (501)
Q Consensus 308 s~Gs~~~~--~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~--~n~~~~~~vp-q~~l-------L~ 375 (501)
+|||.... .....+.+++.|++.|.+.++-+.++... .+.+.+. ++++++.--. +.+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~--------~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM--------EIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH--------HHHHHHhccCCceEEEeccHHHHHHHHHHHHHH
Confidence 56776422 22346778899999999999988765431 2222221 2343322111 1111 11
Q ss_pred CCCccceEeccCch------hHHHhhhcCCceEecC
Q 010775 376 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 376 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
...++++++|.|-| .+++|.+.++|||++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 23455599999865 7889999999999984
No 330
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=31.91 E-value=4.3e+02 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=32.1
Q ss_pred ccCchhH-HHhhh-cC--CceEecCC---CCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 385 HCGWNSI-VESLC-SG--VPMICWPF---TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 385 HGG~gs~-~eal~-~G--vP~v~~P~---~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
+||.||- .|.+. +| +|++-+.+ +.||..-.... ++ ..++++.|.+.|...+.
T Consensus 565 ~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~-~~-----------~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 565 DGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELL-AE-----------LGLDAEGIARRILEWLK 623 (627)
T ss_pred cccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHH-HH-----------cCCCHHHHHHHHHHHHh
Confidence 8999874 45443 34 55554433 45665555554 32 46788888888877765
No 331
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.77 E-value=4.3e+02 Score=24.95 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHcCCCeEEEecc
Q 010775 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 105 ~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~--~~~~~A~~lgiP~v~~~~~ 153 (501)
.+.++.+.+++. +..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 205 ~l~~l~~~ik~~------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 205 DLKRLIDLAKEK------GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred HHHHHHHHHHHc------CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 455666666654 889999998766 4667899999999888655
No 332
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=31.59 E-value=3.8e+02 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC--EEEEEeC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGF--HITFVNT 46 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH--~Vt~~~~ 46 (501)
+||+++.++..+-+. .+.+.+.+.++ +|.++.+
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~ 35 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVIS 35 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEE
Confidence 478888876655444 55566666655 6666544
No 333
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=31.55 E-value=4e+02 Score=24.23 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.2
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEE
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVL 149 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~ 149 (501)
+.+.+|+-.+..-....|++.|+|++.
T Consensus 80 GA~FivsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 80 GAQFIVSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcEEC
Confidence 778998888777888889999999877
No 334
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.41 E-value=58 Score=23.56 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 010775 28 LKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 28 l~La~~L~~rGH~Vt~~~~~ 47 (501)
+..|..|+++|++|+++-..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 67889999999999998643
No 335
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=31.35 E-value=60 Score=30.12 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 010775 27 MLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~ 46 (501)
-.+||+.|.++||+|+++..
T Consensus 29 G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHHhCCCEEEEEEC
Confidence 36789999999999999864
No 336
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=31.11 E-value=79 Score=26.31 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=26.2
Q ss_pred CCCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
|+.-..+..++||.++-.|=-| ..|++.|.+.||+|+-+....
T Consensus 1 ~~~~~~~~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 1 MNTPATQAARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----------EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCH
T ss_pred CCccccCCCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4444445788999999887666 368999999999998876543
No 337
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=30.85 E-value=97 Score=28.93 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=28.0
Q ss_pred CCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 010775 3 SKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (501)
Q Consensus 3 ~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (501)
++.+....++|+++.-=-.--..-+-.....|.++||+|++++
T Consensus 3 ~~~~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~ 45 (237)
T COG2120 3 SLPPMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVC 45 (237)
T ss_pred CccccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEE
Confidence 3444455667776652222333556677778899999999987
No 338
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=30.82 E-value=4.6e+02 Score=25.33 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=31.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
-.|.++-.++.|-..-+..|+..|.++|+.|.++.....
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 455555556779999999999999999999999886543
No 339
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=30.75 E-value=2e+02 Score=27.34 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=33.1
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhh
Q 010775 11 VHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (501)
Q Consensus 11 ~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 56 (501)
.|++.+.+ ++.|--.-...||.+|++.|.+|-++=-.-+...+...
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~ 104 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRM 104 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHH
Confidence 34444444 45688888999999999999999998765555444443
No 340
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=30.67 E-value=67 Score=29.74 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 23 HIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 23 H~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
|+..|...|++|.++||+|+++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5668999999999999999999876
No 341
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=30.23 E-value=3.7e+02 Score=23.39 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=61.2
Q ss_pred EEcCCCccCHHH-HHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCC--------CCCCCCCC
Q 010775 15 CIPSPFQSHIKA-MLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGL--------PASSDESP 85 (501)
Q Consensus 15 ~~~~~~~GH~~p-~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~--------~~~~~~~~ 85 (501)
.+.+...+.... +-.+|..|.++|++|.=+........ ...........++++- ... ...
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~---------~~~~~~m~l~dl~~G~~~~IsQ~LG~g--s~g 71 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADG---------DGGRCDMDLRDLPSGRRIRISQDLGPG--SRG 71 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCC---------CCCccceEEEECCCCCEEEEeeccCCC--Ccc
Confidence 445555667766 45799999999999987765331110 0122356666666432 111 000
Q ss_pred CcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc---------hHHHHHHHcCCCeEEEecc
Q 010775 86 TAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP---------FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~---------~~~~~A~~lgiP~v~~~~~ 153 (501)
..-|.. .+... ...++.-++. ++|++|..-|.- ..+..|-..|||+++..+.
T Consensus 72 CrLD~~----~La~A--~~~l~~al~~----------~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 72 CRLDPG----ALAEA--SAALRRALAE----------GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred cccCHH----HHHHH--HHHHHHHHhc----------CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 111111 11111 1222333333 899999987643 2344577789999997665
No 342
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.06 E-value=63 Score=29.57 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=22.6
Q ss_pred CCCCCCCCCCcEEEEEc--CCCccCHHHHHHHHHHHHhCCCEEEE
Q 010775 1 MESKPKACSKVHAVCIP--SPFQSHIKAMLKLAKLLHHKGFHITF 43 (501)
Q Consensus 1 ~~~~~~~~~~~~il~~~--~~~~GH~~p~l~La~~L~~rGH~Vt~ 43 (501)
||++++. | +|++.. .|+.|| +||+++++.|+.|.-
T Consensus 1 ~e~~~~~-k--~VlItgcs~GGIG~-----ala~ef~~~G~~V~A 37 (289)
T KOG1209|consen 1 SELQSQP-K--KVLITGCSSGGIGY-----ALAKEFARNGYLVYA 37 (289)
T ss_pred CCcccCC-C--eEEEeecCCcchhH-----HHHHHHHhCCeEEEE
Confidence 5666652 2 333333 334455 789999999999864
No 343
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=30.05 E-value=2.7e+02 Score=29.94 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCccceEeccCch------hHHHhhhcCCceEecC
Q 010775 377 PSIGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 377 ~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
+.+ +++|.|-| .+++|.+.++|+|++.
T Consensus 64 ~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445 99998855 7889999999999983
No 344
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=29.84 E-value=4.5e+02 Score=24.29 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=27.7
Q ss_pred cEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 11 VHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 11 ~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
|+.+|++-. .-|-..-...|++.|.++|++|..+=+
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECc
Confidence 344555533 339999999999999999999998653
No 345
>PRK04328 hypothetical protein; Provisional
Probab=29.79 E-value=3.2e+02 Score=25.58 Aligned_cols=45 Identities=9% Similarity=-0.128 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 54 (501)
..-+++.-.++.|-..-.+.++..-+++|+.+.|++.+...+.+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 345666677788998888888887778899999999876655543
No 346
>PRK07773 replicative DNA helicase; Validated
Probab=29.22 E-value=3.7e+02 Score=30.65 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=35.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRLL 54 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~~~ 54 (501)
=+++..-|+.|-..-.+.+|...+.+ |..|.|++-+...+.+.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 46677778999999999999998754 89999999887666554
No 347
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=29.15 E-value=94 Score=28.22 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
++||.+-..++-|-...|+.=|.+|.++|.+|.+--.+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 58999999999999999999999999999999986544
No 348
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=29.11 E-value=3.9e+02 Score=26.89 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=27.1
Q ss_pred CcEEEEEc-CCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 10 KVHAVCIP-SPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 10 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
..+|+++- .|..|. .+|+.|.++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 36888886 787775 5899999999999998753
No 349
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=28.80 E-value=68 Score=31.66 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=27.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
|||.++-.|..|. .+|..|+++||+|+++....
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHH
Confidence 6899998888774 57889999999999998643
No 350
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=28.71 E-value=3.9e+02 Score=23.43 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCcc
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIG 380 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~ 380 (501)
++.+-.+++|.+. +.+++.++.+|.+++..-+... ... ... . ....+.+..++|+.+++
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~---------~~~--~~~-~-~~~~~~~l~ell~~aDi- 94 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK---------PEE--GAD-E-FGVEYVSLDELLAQADI- 94 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH---------HHH--HHH-H-TTEEESSHHHHHHH-SE-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC---------hhh--hcc-c-ccceeeehhhhcchhhh-
Confidence 4568899999987 6677777788888776554211 110 001 1 22367788899999998
Q ss_pred ceEeccCchhHHHhhhcCCceEecCCCCchhhhHHhhhhhhcce-eeecCCC-CCccHHHHHHHHH
Q 010775 381 GFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVG-MEINGDD-EDVIRNEVEKLVR 444 (501)
Q Consensus 381 ~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G-~~l~~~~-~~~~~~~l~~ai~ 444 (501)
++.|.-.+. ...+..|+..+ +.++=| +-++... .-+++++|.++++
T Consensus 95 -v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 95 -VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred -hhhhhcccc----------------ccceeeeeeee-eccccceEEEeccchhhhhhhHHHHHHh
Confidence 777664321 13566777777 665543 4444322 4667777776664
No 351
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=28.69 E-value=2.8e+02 Score=29.74 Aligned_cols=28 Identities=11% Similarity=0.545 Sum_probs=23.0
Q ss_pred CCCccceEeccCch------hHHHhhhcCCceEecC
Q 010775 376 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 376 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+.+ +++|.|-| .+++|...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3555 99999876 5789999999999984
No 352
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=28.61 E-value=80 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 010775 26 AMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 26 p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
.-+.+|..|++.|++||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 35789999999999999998643
No 353
>PLN02778 3,5-epimerase/4-reductase
Probab=28.51 E-value=92 Score=30.10 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=25.5
Q ss_pred CCCCCCCCCCcEEEEEcCCCc-cCHHHHHHHHHHHHhCCCEEEEE
Q 010775 1 MESKPKACSKVHAVCIPSPFQ-SHIKAMLKLAKLLHHKGFHITFV 44 (501)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~-GH~~p~l~La~~L~~rGH~Vt~~ 44 (501)
|.+++. ..+||||+.--.+. |+ .|++.|.++||+|++.
T Consensus 1 ~~~~~~-~~~~kiLVtG~tGfiG~-----~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 1 SNGTAG-SATLKFLIYGKTGWIGG-----LLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCC-CCCCeEEEECCCCHHHH-----HHHHHHHhCCCEEEEe
Confidence 344444 56788887654333 43 5788899999999864
No 354
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.38 E-value=72 Score=31.07 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
+|||.++-.|..| ..+|+.|.++||+|+++...
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 5799999888777 47899999999999988754
No 355
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=28.07 E-value=3.2e+02 Score=25.82 Aligned_cols=87 Identities=17% Similarity=0.220 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCcccHHHHHHHHHHhhcch
Q 010775 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLGENIINNVLLH 104 (501)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (501)
.-+..|++.|.++|.+|.+++.+...+..++... .+ +. ... . .+.. ..
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~--------~~-----~~--~~~-------------~-~~~~---~~ 187 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAA--------AL-----GG--PRV-------------V-NLAG---KT 187 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH--------hc-----CC--Ccc-------------c-cCcC---CC
Confidence 3589999999999999999887665554433211 00 00 000 0 0000 11
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 010775 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 105 ~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (501)
.+.+++.-+. +.|++|+-.. ....+|..+|+|++.++..
T Consensus 188 ~l~e~~~li~--------~~~l~I~~Ds--g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 188 SLRELAALLA--------RADLVVTNDS--GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred CHHHHHHHHH--------hCCEEEeeCC--HHHHHHHHcCCCEEEEECC
Confidence 2334444443 4499996432 5778888999999998653
No 356
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=27.92 E-value=1.3e+02 Score=28.92 Aligned_cols=76 Identities=11% Similarity=0.211 Sum_probs=50.4
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHH
Q 010775 313 IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIV 392 (501)
Q Consensus 313 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~ 392 (501)
...+.+..+.+.+++.....+.||..+++.. -.++.++++...+-.+|.. ||-..-.-+++
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYG-----------------ANRLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 3445666888999999999999999886542 1244455555555566666 77666666666
Q ss_pred Hhhhc--CCceEecCCC
Q 010775 393 ESLCS--GVPMICWPFT 407 (501)
Q Consensus 393 eal~~--GvP~v~~P~~ 407 (501)
-+++. |++.+-=|..
T Consensus 105 ~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 105 LALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHhcCceEEECccc
Confidence 66653 6666666643
No 357
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=27.63 E-value=4.5e+02 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=35.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc-chHHHhh
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF-NHRRLLK 55 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~ 55 (501)
--+.+.-.++.|-..-.+.++....+.|..|.|+.++. ..+++.+
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 34566666788999999999999999999999999975 4444444
No 358
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.61 E-value=1.3e+02 Score=28.63 Aligned_cols=54 Identities=11% Similarity=0.228 Sum_probs=37.3
Q ss_pred CCccceEeccCchhHHHhhhc-----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 377 PSIGGFLTHCGWNSIVESLCS-----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 377 ~~~~~~I~HGG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
+++ +|+=||-||+..+++. .+|++.+-..+ .+|. + ...+.+++.+++.++++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGF-L----~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGF-Y----CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeE-c----ccCCHHHHHHHHHHHHcCC
Confidence 566 9999999999999874 45655543311 1232 2 3567788889998888765
No 359
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=27.44 E-value=1.3e+02 Score=27.77 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=33.6
Q ss_pred CcEEEEEcCC-CccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 10 KVHAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 10 ~~~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
+..|++++=+ ..+...+.....+.|.++|++|.|++|.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 4578888877 5699999999999999999999999987
No 360
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.31 E-value=3.7e+02 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=22.2
Q ss_pred ccceEeccCch------hHHHhhhcCCceEecC
Q 010775 379 IGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 379 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+++++|.|-| .+++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33499998865 7889999999999983
No 361
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=27.29 E-value=50 Score=31.02 Aligned_cols=28 Identities=14% Similarity=0.225 Sum_probs=22.1
Q ss_pred CCccceEeccCchhHHHhhhc----CCceEecCC
Q 010775 377 PSIGGFLTHCGWNSIVESLCS----GVPMICWPF 406 (501)
Q Consensus 377 ~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~ 406 (501)
+++ +|+-||-||+..+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999988664 678776654
No 362
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=27.28 E-value=1.1e+02 Score=31.17 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=26.4
Q ss_pred eEeccCchhHHHhhhcCCceEecCCCC--chhhhHHhhhhhhcceeeec
Q 010775 382 FLTHCGWNSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEIN 428 (501)
Q Consensus 382 ~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~g~G~~l~ 428 (501)
..|.||.--+-|-=++|+|+|.+--.. -.-.-|.|++. ++++-.+
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~P 394 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHP 394 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCC
Confidence 555666555556678999999865422 22333666644 5555444
No 363
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=27.26 E-value=4.7e+02 Score=23.67 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=76.8
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh-ccCCeeecccChHHhhcCCCc
Q 010775 301 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSI 379 (501)
Q Consensus 301 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~-~~n~~~~~~vpq~~lL~~~~~ 379 (501)
++.+++|+.|.+. ..-+..|.+.+..+.++-. . ..+.+..-. ..++....--.+...+....+
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-~--------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-E--------LESELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-C--------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 3569999888775 3344556667777665432 1 112222111 124443222223445666776
Q ss_pred cceEeccCchhHHHh-----hhcCCceEe--cCCCCchhhhHHhhhhhhcceeeecCCC-CCccHHHHHHHHHHHhcChh
Q 010775 380 GGFLTHCGWNSIVES-----LCSGVPMIC--WPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEK 451 (501)
Q Consensus 380 ~~~I~HGG~gs~~ea-----l~~GvP~v~--~P~~~DQ~~na~rv~~~~g~G~~l~~~~-~~~~~~~l~~ai~~vl~~~~ 451 (501)
+|..-|...+.+. -..|+|+-+ -|-.+| +..-..+ ++-++-+.+.... .-.-+..|++.|.+.+.+.-
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~ 148 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGGAAPVLARLLRERIETLLPPSL 148 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhH
Confidence 8888887655444 346888833 344444 2223333 3323444444310 22333567777877775331
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010775 452 GKQMRNKAMEWKGLAEEA 469 (501)
Q Consensus 452 ~~~~r~~a~~~~~~~~~~ 469 (501)
+.+-+.+.++++.+++.
T Consensus 149 -~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 149 -GDLATLAATWRDAVKKR 165 (205)
T ss_pred -HHHHHHHHHHHHHHHhh
Confidence 23666666677766653
No 364
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.19 E-value=1.1e+02 Score=31.17 Aligned_cols=40 Identities=10% Similarity=0.138 Sum_probs=26.9
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch------H----HHHHHHcCCCeEEEe
Q 010775 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF------T----ITAAQQLGLPIVLFF 151 (501)
Q Consensus 103 ~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~------~----~~~A~~lgiP~v~~~ 151 (501)
...+.++++++ +||++|+-+.+.+ + ..+.+++|||.+.-+
T Consensus 65 ~~~i~~mv~k~---------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 65 KAKVLEMIKGA---------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHhc---------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34445555554 9999999986651 1 224567999999864
No 365
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=27.10 E-value=98 Score=31.49 Aligned_cols=45 Identities=20% Similarity=0.078 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
+.||++...|+.+ ..=...+.+.|.+.|++|.++.++.....+..
T Consensus 6 ~k~IllgvTGsia-a~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 6 GKRIVLGVSGGIA-AYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCeEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4588888878764 44678999999999999999999876665543
No 366
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.04 E-value=78 Score=32.95 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCEEEEEeCCc
Q 010775 9 SKVHAVCIPSPFQSHIKA------------MLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
+..|||+..-|++=.+.| -.+||+++..+|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 456888887777766665 3689999999999999998643
No 367
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.03 E-value=3.3e+02 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCccceEeccCchhHHHhh----hcCCceEecCC
Q 010775 377 PSIGGFLTHCGWNSIVESL----CSGVPMICWPF 406 (501)
Q Consensus 377 ~~~~~~I~HGG~gs~~eal----~~GvP~v~~P~ 406 (501)
.++ +|--||-||++|++ ..++|+-++|.
T Consensus 65 ~d~--vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 65 TDA--LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCE--EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 455 99999999999987 34789999996
No 368
>PRK13057 putative lipid kinase; Reviewed
Probab=26.99 E-value=1.2e+02 Score=29.02 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=24.2
Q ss_pred cCCCccceEeccCchhHHHhh----hcCCceEecCC
Q 010775 375 KHPSIGGFLTHCGWNSIVESL----CSGVPMICWPF 406 (501)
Q Consensus 375 ~~~~~~~~I~HGG~gs~~eal----~~GvP~v~~P~ 406 (501)
...++ +|--||-||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 34556 99999999999985 34789999996
No 369
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.95 E-value=1.5e+02 Score=24.79 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=35.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
+|++.+..+.+|-.----++..|...|++|+.++.....+.+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~ 44 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFID 44 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 47888888999999999999999999999999987655444433
No 370
>PRK04148 hypothetical protein; Provisional
Probab=26.62 E-value=1.3e+02 Score=25.33 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
++.+++.+-.| .| ..+|..|++.||+|+.+=....
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHH
Confidence 45789999888 44 3468888899999998765443
No 371
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.57 E-value=5.9e+02 Score=24.54 Aligned_cols=106 Identities=10% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCEEEEEeC-CcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNT-EFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 84 (501)
++++||+++.++..+.+. +|.+..... +++|..+.+ ......+.+. .++.+..++... ..
T Consensus 87 ~~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~---------~gIp~~~~~~~~-~~---- 149 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAW---------HGIPFHHFPITP-DT---- 149 (286)
T ss_pred ccCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHH---------hCCCEEEeCCCc-Cc----
Confidence 568999999998644444 344444333 688888754 3222222221 256666654211 10
Q ss_pred CCcccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-hHHHHHHHcCCCeEEEecc
Q 010775 85 PTAQDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
.... ...+.+++++. ++|+++.-.+.. -...+-+.+.-.++.++|+
T Consensus 150 -------------~~~~-~~~~~~~l~~~---------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 150 -------------KPQQ-EAQVLDVVEES---------GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred -------------hhhh-HHHHHHHHHHh---------CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
Confidence 0011 22333445554 889999776544 3444555555556666443
No 372
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.54 E-value=4.8e+02 Score=23.54 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=24.0
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEeccc
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFTIS 154 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (501)
+.+.+++=.+..-....|+..|+|++.=..++
T Consensus 80 GA~FivSP~~~~~v~~~~~~~~i~~iPG~~Tp 111 (196)
T PF01081_consen 80 GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTP 111 (196)
T ss_dssp T-SEEEESS--HHHHHHHHHHTSEEEEEESSH
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcccCCcCCH
Confidence 77999999888888899999999998854443
No 373
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.50 E-value=88 Score=28.72 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.1
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHhhh
Q 010775 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEFN-HRRLLKA 56 (501)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~ 56 (501)
+.|--.=...++.-+...||.|++++++.. ++.+.++
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm 75 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQM 75 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHH
Confidence 557777889999999999999999999853 4444443
No 374
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=26.46 E-value=1.3e+02 Score=25.39 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
|+-|++. ++..--+.|..-++...+..|++|+++.+
T Consensus 4 k~~IIl~-SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 4 KLGIILA-SGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred eEEEEEe-CCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4444444 47778889999999999999999999887
No 375
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=26.46 E-value=64 Score=26.32 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 24 IKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 24 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
+.|++.+.-.+.-+||.++++-|..|.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 457777777888999999999998877643
No 376
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=26.43 E-value=1.4e+02 Score=24.79 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=23.1
Q ss_pred cEEEEEcCC-CccCHH--HHHHHHHHHHhCCCEE-EEEeC
Q 010775 11 VHAVCIPSP-FQSHIK--AMLKLAKLLHHKGFHI-TFVNT 46 (501)
Q Consensus 11 ~~il~~~~~-~~GH~~--p~l~La~~L~~rGH~V-t~~~~ 46 (501)
||++++-.. -+|+-. --+.+|+.+.+.||+| +++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 345544333 334444 5778899999999994 66643
No 377
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=26.41 E-value=87 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=23.9
Q ss_pred CeeEEE-EcCCcc-hHHHHHHHcCCCeEEEecc
Q 010775 123 AVSCII-SDGFLP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 123 ~~DlVi-~D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
.||+|| +|+..- -++.=|.++|||+|.++-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeC
Confidence 678777 565444 5778899999999999665
No 378
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=26.33 E-value=1e+02 Score=26.03 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 29 KLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 29 ~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
-+|..|++.||+|++++.....+.+.+
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~ 38 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKE 38 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhh
Confidence 478899999999999998763343443
No 379
>PRK08322 acetolactate synthase; Reviewed
Probab=26.18 E-value=3.8e+02 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.1
Q ss_pred ccceEeccCch------hHHHhhhcCCceEecC
Q 010775 379 IGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 379 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+++++|.|-| .+++|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 33399998855 7889999999999984
No 380
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=26.13 E-value=81 Score=30.83 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=29.8
Q ss_pred cEEEEEcCC--Cc-cCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 11 VHAVCIPSP--FQ-SHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 11 ~~il~~~~~--~~-GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
|||+|+.-| +. -+......|.++-++|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 567777654 22 45557889999999999999999886543
No 381
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.13 E-value=1.2e+02 Score=29.01 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=37.7
Q ss_pred CCCccceEeccCchhHHHhhhc-CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 376 HPSIGGFLTHCGWNSIVESLCS-GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~-GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
.+++ +|+=||-||+..+.+. .+|++.+-. -+ +|. + ...+.+++.+++.++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--------G~------lGF-L----~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--------GG------LGF-L----TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--------CC------Ccc-C----cccCHHHHHHHHHHHHcCC
Confidence 4566 9999999999999884 446554422 11 221 1 3577888999999998865
No 382
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=26.07 E-value=1.2e+02 Score=26.99 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=22.3
Q ss_pred CeeEEEEcC--CcchHHHHHHHcCCCeEEE
Q 010775 123 AVSCIISDG--FLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 123 ~~DlVi~D~--~~~~~~~~A~~lgiP~v~~ 150 (501)
++|.|++=. -++.+..+|..+|+|++..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 789999433 2337899999999999997
No 383
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=25.92 E-value=89 Score=28.51 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-------hHHHHHHHcCCCeEEE
Q 010775 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-------FTITAAQQLGLPIVLF 150 (501)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~-------~~~~~A~~lgiP~v~~ 150 (501)
+.+.++++++.. ++|++++|.... .+..++-.+++|+|-+
T Consensus 77 P~~l~~l~~l~~-------~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGV 123 (206)
T PF04493_consen 77 PCILEALEKLKN-------KPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGV 123 (206)
T ss_dssp HHHHHHHHTSSS---------SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEE
T ss_pred HHHHHHHHHhcc-------cCCEEEEeCceeecCCCcChhheeeeccCCCEEEE
Confidence 455666777753 889999998655 3566778889999998
No 384
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=25.59 E-value=91 Score=28.37 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=23.7
Q ss_pred CeeEEE-EcCCcc-hHHHHHHHcCCCeEEEecc
Q 010775 123 AVSCII-SDGFLP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 123 ~~DlVi-~D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
.||+|| .|+..- -++.=|.++|||+|.++-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 668777 565444 5777899999999999665
No 385
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=25.48 E-value=5.7e+02 Score=25.62 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=34.5
Q ss_pred HhccCCeeecccChHH---hhcCCCccceEeccC----chhHHHhhhcCCceEec
Q 010775 357 KAKEKGFVASWCPQEE---VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICW 404 (501)
Q Consensus 357 ~~~~n~~~~~~vpq~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~ 404 (501)
.+.+.+.+.+-+|+.+ +|.+.++ |++-.= .-++.||.++|.|+|..
T Consensus 249 ~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 249 FLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred hccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3567888899999764 7888887 775432 13688999999999863
No 386
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.46 E-value=1.4e+02 Score=30.45 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHH---HHcCCCeEEEeccchhHH
Q 010775 107 LDLLAKLNDSSNSVNPAVSCIISDGFLP----FTITAA---QQLGLPIVLFFTISACSF 158 (501)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~DlVi~D~~~~----~~~~~A---~~lgiP~v~~~~~~~~~~ 158 (501)
.++.+.+.+. +.|.||-.+.+. |+.+++ ++.|||+|.+++......
T Consensus 326 ~eIa~~Lk~d------gVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~ 378 (431)
T TIGR01917 326 KEFSKELLAA------GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIAL 378 (431)
T ss_pred HHHHHHHHHc------CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHH
Confidence 6677777765 999999886655 344443 677999999977765543
No 387
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.41 E-value=1.3e+02 Score=30.60 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHH---HHcCCCeEEEeccchhH
Q 010775 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLP----FTITAA---QQLGLPIVLFFTISACS 157 (501)
Q Consensus 106 l~~ll~~l~~~~~~~~~~~DlVi~D~~~~----~~~~~A---~~lgiP~v~~~~~~~~~ 157 (501)
-.++.+.+.+. ++|.||-.+.+. |+.+++ ++.|||+|.+++..+..
T Consensus 325 g~eIa~~Lk~d------gVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis 377 (431)
T TIGR01918 325 AKEFVVELKQG------GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIA 377 (431)
T ss_pred HHHHHHHHHHc------CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHh
Confidence 36777777765 999999886655 344443 67899999997765544
No 388
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.39 E-value=1e+02 Score=27.30 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
+..++++-.++.|-..=..++|+++.++|+.|.|++.....+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 35788888888888888999999999999999999876555544
No 389
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.22 E-value=3.8e+02 Score=25.80 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhhhCCCCCCCCCCeeEEeCCCCCCCCCCCCCCc
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (501)
.+++||+++.++..+.+.-++.-.+. .+-+++|..+.+ +.+.+... ....++.+..++.. +..
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~vis--n~~~~~~l------A~~~gIp~~~~~~~-~~~------- 149 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVIS--NHDDLRSL------VERFGIPFHHVPVT-KET------- 149 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEE--cChhHHHH------HHHhCCCEEEeccC-ccc-------
Q ss_pred ccHHHHHHHHHHhhcchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-hHHHHHHHcCCCeEEEecc
Q 010775 88 QDAYSLGENIINNVLLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-FTITAAQQLGLPIVLFFTI 153 (501)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (501)
.... ...+.+++++. ++|++++-.+.. ....+-+.+.-.++.++|+
T Consensus 150 ----------~~~~-~~~~~~~l~~~---------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 150 ----------KAEA-EARLLELIDEY---------QPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ----------cchh-HHHHHHHHHHh---------CCCEEEEecchhhcCHHHHhhccCCceecCcc
No 390
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=25.08 E-value=1e+02 Score=29.78 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
+||.|+-.|..| ..+|+.|.++||+|+++.-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 478888887777 47899999999999998743
No 391
>PRK06270 homoserine dehydrogenase; Provisional
Probab=24.96 E-value=5e+02 Score=25.69 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=36.7
Q ss_pred ChHHhhcCCCccceEe------ccC---chhHHHhhhcCCceEe---cCCCCchhhhHHhhhhhhcceeeec
Q 010775 369 PQEEVLKHPSIGGFLT------HCG---WNSIVESLCSGVPMIC---WPFTGDQPTNGRYVCNEWGVGMEIN 428 (501)
Q Consensus 369 pq~~lL~~~~~~~~I~------HGG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~rv~~~~g~G~~l~ 428 (501)
+..++|..+++..+|- |+| .--+.+++.+|+++|+ -|+...-....+.. ++.|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEe
Confidence 5567776555444665 443 3455899999999999 47754333333333 6667766653
No 392
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=24.94 E-value=92 Score=29.75 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCEEEEEeCCcchHHH
Q 010775 29 KLAKLLHHKGFHITFVNTEFNHRRL 53 (501)
Q Consensus 29 ~La~~L~~rGH~Vt~~~~~~~~~~~ 53 (501)
-+|..|++.||+|++++-....+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i 29 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEAL 29 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHH
Confidence 4788999999999999875333333
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=24.93 E-value=1.1e+02 Score=28.93 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
...|-+.-.|+-|--.-.-+|++.|.++||+|-+++..+..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 35677777888899999999999999999999999865544
No 394
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=24.93 E-value=1.2e+02 Score=26.22 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
..+|+++-.|..| ...++.|.+.||+|++++++
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 4577777655434 67889999999999999654
No 395
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=24.80 E-value=5.9e+02 Score=23.94 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=41.4
Q ss_pred cChHHhhcCCCccceEeccC----chhHHHhhhcCCceEecCCCCchhh--hHHhhhhhhcceeeecCCCCCccHHHHHH
Q 010775 368 CPQEEVLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPT--NGRYVCNEWGVGMEINGDDEDVIRNEVEK 441 (501)
Q Consensus 368 vpq~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~g~G~~l~~~~~~~~~~~l~~ 441 (501)
-...+++..+++ +|.-.- .--+..++.+|+|+|+-|....+.. --..+ + .++++.+... ..+....+..
T Consensus 52 ~dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~a-a-~~~~v~~s~n-~s~g~~~~~~ 126 (257)
T PRK00048 52 DDLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEA-A-KKIPVVIAPN-FSIGVNLLMK 126 (257)
T ss_pred CCHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-h-cCCCEEEECc-chHHHHHHHH
Confidence 344556666776 663222 3445668999999999886544332 22222 2 4666666541 3455555444
Q ss_pred HHHHH
Q 010775 442 LVREM 446 (501)
Q Consensus 442 ai~~v 446 (501)
.++.+
T Consensus 127 l~~~a 131 (257)
T PRK00048 127 LAEKA 131 (257)
T ss_pred HHHHH
Confidence 44433
No 396
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.72 E-value=1.2e+02 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=26.6
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 17 PSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 17 ~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
+-|+.|-..-..+||..|++.|+.|..+=-.
T Consensus 9 ~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 9 PKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3457799999999999999999999988643
No 397
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=24.65 E-value=1.5e+02 Score=28.66 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC
Q 010775 25 KAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
...+.+++.|.+.|+.|..++.+
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc
Confidence 46789999999999999999876
No 398
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=24.31 E-value=71 Score=29.19 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcch-------HHHHHHHcCCCeEEE
Q 010775 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLPF-------TITAAQQLGLPIVLF 150 (501)
Q Consensus 105 ~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~-------~~~~A~~lgiP~v~~ 150 (501)
.+.+.++++.. .||+|++|..... +..+.-.+++|+|-+
T Consensus 82 ~l~~~~~~l~~-------~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 82 PLLEALEKLKT-------KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHhCCC-------CCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 45566666643 7999999997652 344456667888887
No 399
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=23.99 E-value=4.7e+02 Score=28.11 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=22.1
Q ss_pred ccceEeccCch------hHHHhhhcCCceEecC
Q 010775 379 IGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 379 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+++++|.|-| .+++|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499998865 6788999999999985
No 400
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=23.81 E-value=1.8e+02 Score=23.67 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
||++..-++.|-......+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999888755
No 401
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=23.81 E-value=5.2e+02 Score=25.77 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=71.3
Q ss_pred CeeecccChHHhhc-CCCccceEecc---Cch-hHHHhhhcCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccH
Q 010775 362 GFVASWCPQEEVLK-HPSIGGFLTHC---GWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 436 (501)
Q Consensus 362 ~~~~~~vpq~~lL~-~~~~~~~I~HG---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~ 436 (501)
..+++..+.-+.|. |.++ ||+|= |.| -..|+++.|-|.| -|+..+ . ++|... ..++.
T Consensus 255 asfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l-~--d~GYYY----~~fD~ 316 (364)
T PF10933_consen 255 ASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLL-K--DVGYYY----PDFDA 316 (364)
T ss_pred eEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchh-c--ccCcCC----CCccH
Confidence 34567777666554 7888 99995 333 5689999999996 588888 4 488888 56777
Q ss_pred HHHHHHHHHHhc--ChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 010775 437 NEVEKLVREMME--GEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNE 486 (501)
Q Consensus 437 ~~l~~ai~~vl~--~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~ 486 (501)
.+=++++.+++. |.+-+.|+++++++=..+. -....+++...++
T Consensus 317 ~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~------p~n~~nv~~y~~~ 362 (364)
T PF10933_consen 317 FEGARQLLRAIREHDADLDAYRARARRLLDRLS------PENPANVRAYEAR 362 (364)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhhC------CCCHHHHHHHHHh
Confidence 777777777764 5555679999999887766 2334555554443
No 402
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=23.77 E-value=1.7e+02 Score=29.32 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred hhhhccccCCCCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccC
Q 010775 290 TECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP 369 (501)
Q Consensus 290 ~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vp 369 (501)
+++.+++.+.+ +.++.|+-++.... ..+.+.+.|+..+..+++..- +.+-....-.-
T Consensus 19 ~~l~~~l~~~g-~~~livtd~~~~~~---~~~~v~~~l~~~~~~~~~~~~-------------------~~ep~~~~v~~ 75 (366)
T PRK09423 19 ARLGEYLKPLG-KRALVIADEFVLGI---VGDRVEASLKEAGLTVVFEVF-------------------NGECSDNEIDR 75 (366)
T ss_pred HHHHHHHHHcC-CEEEEEEChhHHHH---HHHHHHHHHHhCCCeEEEEEe-------------------CCCCCHHHHHH
Q ss_pred hHHhhcCCCccceEeccCchhHHHh-----hhcCCceEecCCCC
Q 010775 370 QEEVLKHPSIGGFLTHCGWNSIVES-----LCSGVPMICWPFTG 408 (501)
Q Consensus 370 q~~lL~~~~~~~~I~HGG~gs~~ea-----l~~GvP~v~~P~~~ 408 (501)
-.+.+...++.++|--|| ||+..+ +..|+|++.+|...
T Consensus 76 ~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 76 LVAIAEENGCDVVIGIGG-GKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHhcCCCEEEEecC-hHHHHHHHHHHHHcCCCEEEeCCcc
No 403
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=23.24 E-value=1.1e+02 Score=27.85 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
++.||++...|+..=+. ...|.+.|. +||+|.++.++...+.+..
T Consensus 18 ~~k~IllgVtGSIAAyk-~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 18 RKPRILLAASGSVAAIK-FGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCCEEEEEEeCHHHHHH-HHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 35688888877665444 366888897 5999999999877776643
No 404
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=23.20 E-value=1.4e+02 Score=24.41 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=27.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
++++.+|..++-.-+..+++.|+++|..|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3566667777777899999999999999998744
No 405
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.20 E-value=66 Score=30.89 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=36.3
Q ss_pred CCCccceEeccCchhHHHhhh---cCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 376 HPSIGGFLTHCGWNSIVESLC---SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
.+++ +|.-||-||+.+++. .++|+++++... +| .+ ..++.+++.+++.++++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~--------------lG-Fl----~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT--------------LG-FL----TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC--------------CC-cc----ccCCHHHHHHHHHHHHcCC
Confidence 3566 999999999999984 345777777521 11 11 2345677777887777654
No 406
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.01 E-value=1.2e+02 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
++|.++-.|++| -+||..|++.||+|++.+...
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 578888888887 689999999999999998643
No 407
>PRK04946 hypothetical protein; Provisional
Probab=22.95 E-value=80 Score=28.13 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChH-HhhcCCCccceEeccCchhHH
Q 010775 319 QLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE-EVLKHPSIGGFLTHCGWNSIV 392 (501)
Q Consensus 319 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~-~lL~~~~~~~~I~HGG~gs~~ 392 (501)
.+..++..+...+.+.+.++-+.+. +...+ .+..|+.|. .|+..+++ --.|||.|.++
T Consensus 111 ~L~~fl~~a~~~g~r~v~IIHGkG~---------gvLk~-----~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 111 ELGALIAACRKEHVFCACVMHGHGK---------HILKQ-----QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCH---------hHHHH-----HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 4555666667788888877765431 11211 457788764 47776666 77899998653
No 408
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.92 E-value=83 Score=30.12 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHhhcCCCccceEeccCchhHHHhhh----cCCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHH
Q 010775 371 EEVLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 446 (501)
Q Consensus 371 ~~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~v 446 (501)
.++...+++ +|+=||-||+..+.+ .++|++.+-.. .+|.- ..++++++.+++.++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL-----~~~~~~~~~~~l~~~ 95 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFL-----TDIDPKNAYEQLEAC 95 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccc-----ccCCHHHHHHHHHHH
Confidence 444445677 999999999998765 36787765431 12322 345667777777777
Q ss_pred hc
Q 010775 447 ME 448 (501)
Q Consensus 447 l~ 448 (501)
++
T Consensus 96 ~~ 97 (272)
T PRK02231 96 LE 97 (272)
T ss_pred Hh
Confidence 76
No 409
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.88 E-value=1.2e+02 Score=32.13 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.0
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEe
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~ 151 (501)
+||+||.+. +...+|+++|||++.++
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 799999986 56667899999998874
No 410
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=22.85 E-value=1.4e+02 Score=31.21 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
+.||++...|+.+=+ =...|.+.|.++||+|.++-++.....+..
T Consensus 70 ~k~IllgVtGsIAay-ka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIAAY-KALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHHHH-HHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 467888877765544 688999999999999999999877666653
No 411
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.83 E-value=2.4e+02 Score=19.49 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcCCCC
Q 010775 455 MRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSNKHN 494 (501)
Q Consensus 455 ~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~~~~~ 494 (501)
-.+.++++++.+.. |-|+-.++.-...+|++.+...
T Consensus 13 QQ~AVE~Iq~lMae----GmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 13 QQKAVERIQELMAE----GMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHHHc----cccchhHHHHHHHHHHHHhccc
Confidence 56677777777774 6777777777777777664443
No 412
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.80 E-value=1.3e+02 Score=26.83 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
|||.++-.|--| +.+|-.|++.||+|+.+-..
T Consensus 1 M~I~ViGlGyvG-----l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVG-----LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--STTH-----HHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECCCcch-----HHHHHHHHhCCCEEEEEeCC
Confidence 567777444333 78899999999999998764
No 413
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.75 E-value=73 Score=30.74 Aligned_cols=57 Identities=16% Similarity=0.302 Sum_probs=38.6
Q ss_pred hhcCCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 373 VLKHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 373 lL~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
+...+++ +|+-||-||+..+++. ++|++.+-.. .+|. + ..++.+++.+++.++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-L----t~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-L----TDITVDEAEKFFQAFFQ 119 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-C----CcCCHHHHHHHHHHHHc
Confidence 3345677 9999999999988663 6777665321 1222 2 45667888888888877
Q ss_pred Ch
Q 010775 449 GE 450 (501)
Q Consensus 449 ~~ 450 (501)
++
T Consensus 120 g~ 121 (287)
T PRK14077 120 GE 121 (287)
T ss_pred CC
Confidence 54
No 414
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=22.71 E-value=1.4e+02 Score=29.79 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
+++|+|+++ |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 19 ~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 567888876 444443 45789999999999998864
No 415
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=22.65 E-value=2.2e+02 Score=27.34 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=20.6
Q ss_pred CCccceEeccCchhHHHhhhc-----CCceE-ecCC
Q 010775 377 PSIGGFLTHCGWNSIVESLCS-----GVPMI-CWPF 406 (501)
Q Consensus 377 ~~~~~~I~HGG~gs~~eal~~-----GvP~v-~~P~ 406 (501)
+++ +|.-||-||++|++.. ..|.+ ++|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 455 9999999999997543 34444 4896
No 416
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.56 E-value=2.1e+02 Score=22.27 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=24.3
Q ss_pred CeeEEE--EcCCcc----hHHHHHHHcCCCeEEEeccchhH
Q 010775 123 AVSCII--SDGFLP----FTITAAQQLGLPIVLFFTISACS 157 (501)
Q Consensus 123 ~~DlVi--~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~ 157 (501)
+.|+|| +|...- .+...|++.|+|++.....+...
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 568886 555433 35667999999999986555443
No 417
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.49 E-value=2e+02 Score=21.40 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=27.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEe
Q 010775 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (501)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (501)
+++...++.|-..-...|+..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455556677889999999999999999998876
No 418
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=22.46 E-value=11 Score=21.15 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=13.0
Q ss_pred CchhHHHhhhcCCceEe
Q 010775 387 GWNSIVESLCSGVPMIC 403 (501)
Q Consensus 387 G~gs~~eal~~GvP~v~ 403 (501)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888764
No 419
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=22.45 E-value=2.3e+02 Score=19.29 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010775 455 MRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 491 (501)
Q Consensus 455 ~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~~ 491 (501)
-.+.++++.+++.. |-|+-.++...-++|++..
T Consensus 13 QQ~AvE~Iq~LMaq----GmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 13 QQQAVERIQELMAQ----GMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred HHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHH
Confidence 56777778888774 7777777777777777654
No 420
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.31 E-value=1.6e+02 Score=24.01 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeC
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (501)
++.+++++++|.. +...+..++.|.+.|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 3467889988877 45679999999999999998754
No 421
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.29 E-value=1.2e+02 Score=27.72 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=29.0
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCc--chHHHHHHHcCCCeEEEeccc
Q 010775 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFL--PFTITAAQQLGLPIVLFFTIS 154 (501)
Q Consensus 103 ~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~--~~~~~~A~~lgiP~v~~~~~~ 154 (501)
...++.+++. +||+||..... .....-....++|++.+....
T Consensus 50 ~~~~E~i~~l----------~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 50 SPNLEAILAL----------KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp SB-HHHHHHT------------SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CccHHHHHhC----------CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 3456666654 99999988766 356667788899999987664
No 422
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.28 E-value=1.5e+02 Score=31.86 Aligned_cols=54 Identities=20% Similarity=0.418 Sum_probs=38.7
Q ss_pred CCCccceEeccCchhHHHhhhc----CCceEecCCCCchhhhHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhcCh
Q 010775 376 HPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 450 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~~~ 450 (501)
.+++ +|+-||-||+..+.+. ++|++.+-.. + +|. + ..++.+++.+++.++++++
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G--------~------lGF-L----~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMG--------T------VGF-L----TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------C------CCc-C----cccCHHHHHHHHHHHHcCC
Confidence 3455 9999999999999763 6787766442 1 222 2 4567788888998888765
No 423
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=22.23 E-value=1.8e+02 Score=22.23 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=32.4
Q ss_pred ceEecCCCCchhh-hHHhhhhhhcceeeecCCCCCccHHHHHHHHHHHhc
Q 010775 400 PMICWPFTGDQPT-NGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 448 (501)
Q Consensus 400 P~v~~P~~~DQ~~-na~rv~~~~g~G~~l~~~~~~~~~~~l~~ai~~vl~ 448 (501)
|+++-=..+=||. ||+.- .|+-..+.. ..++++++.++++.+..
T Consensus 51 PILIREcSgVqPrl~ARY~---~G~E~~v~L--~~~s~~~i~kale~l~k 95 (97)
T KOG3446|consen 51 PILIRECSGVQPRLWARYG---NGVERSVSL--ANLSAPQIHKALENLGK 95 (97)
T ss_pred cEeehhhcCCchHHHHHhc---CCceEEeeh--hhcchHHHHHHHHHHhc
Confidence 5555555666776 55543 477777777 89999999999998875
No 424
>PRK13059 putative lipid kinase; Reviewed
Probab=22.22 E-value=4.1e+02 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=22.7
Q ss_pred CCccceEeccCchhHHHhh------hcCCceEecCC
Q 010775 377 PSIGGFLTHCGWNSIVESL------CSGVPMICWPF 406 (501)
Q Consensus 377 ~~~~~~I~HGG~gs~~eal------~~GvP~v~~P~ 406 (501)
.++ +|.-||-||++|.+ ..++|+-++|.
T Consensus 57 ~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 57 YKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 455 99999999999884 23589999997
No 425
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=22.17 E-value=1.8e+02 Score=29.22 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=46.3
Q ss_pred CccceEeccCchhHHHhhhc-----------------CCceEecCCCCchhhhHHhhhhhhcceeeecCCC--CCccHHH
Q 010775 378 SIGGFLTHCGWNSIVESLCS-----------------GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD--EDVIRNE 438 (501)
Q Consensus 378 ~~~~~I~HGG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~~~--~~~~~~~ 438 (501)
...+++|.||..+..-|+.+ +.|+|.++-.. |+-+.+.+ ..+|+|+..-... ..++.++
T Consensus 103 ~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~~~~~md~~~ 180 (373)
T PF00282_consen 103 DAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTDEDGRMDIEA 180 (373)
T ss_dssp TSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BBTTSSB-HHH
T ss_pred CCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCCcchhhhHHH
Confidence 36789999998887766532 35677776655 45555554 7789996544322 4688899
Q ss_pred HHHHHHHHhcC
Q 010775 439 VEKLVREMMEG 449 (501)
Q Consensus 439 l~~ai~~vl~~ 449 (501)
|+++|.+..++
T Consensus 181 L~~~l~~~~~~ 191 (373)
T PF00282_consen 181 LEKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHHT
T ss_pred hhhhhcccccc
Confidence 99999877654
No 426
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=22.13 E-value=1.7e+02 Score=25.47 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=24.7
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCC
Q 010775 304 VIYVNFGSFIFMNKQQLIEVAMGLVNSNH 332 (501)
Q Consensus 304 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 332 (501)
.+|+|+||-...+...++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999887777778888888888775
No 427
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.09 E-value=1.4e+02 Score=30.24 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010775 8 CSKVHAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (501)
Q Consensus 8 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (501)
.++++|+.+... +.|-..-.+.||..|+.+|++|.++=...
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 456677666544 66999999999999999999999986543
No 428
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=22.07 E-value=3e+02 Score=19.63 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=47.4
Q ss_pred CccHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcCCCCCCCCCCC
Q 010775 433 DVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSNKHNSSIPSAN 501 (501)
Q Consensus 433 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~~~~~~~~~~~~gg~~~~~~~~li~~~~~~~~~~~~~~~~~ 501 (501)
..+..+|..-|..+|.. ...+-+.|++-+-..+.+-++..+.+++-|.+|... ...--++|.|
T Consensus 11 pkNmq~LTs~vQ~lLQq-----~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm~q-agvE~~~s~~ 73 (73)
T KOG4117|consen 11 PKNMQDLTSVVQGLLQQ-----TQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQ-AGVEELESEN 73 (73)
T ss_pred cccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-ccccCCCCCC
Confidence 44668899999999974 577888888888777778899999999999999874 2333445543
No 429
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.96 E-value=1.7e+02 Score=29.23 Aligned_cols=43 Identities=9% Similarity=-0.039 Sum_probs=22.5
Q ss_pred hhccccCCCCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEE
Q 010775 292 CLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLW 336 (501)
Q Consensus 292 l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 336 (501)
+.+.+.+...+.+++|+-++... ......+.+.|++.+..+.+
T Consensus 14 l~~~l~~~~~~~~lvv~~~~~~~--~~~~~~v~~~L~~~~~~~~~ 56 (370)
T cd08551 14 LGEEIKNLGGRKALIVTDPGLVK--TGVLDKVIDSLKEAGIEVVI 56 (370)
T ss_pred HHHHHHHcCCCeEEEEeCcchhh--CccHHHHHHHHHHcCCeEEE
Confidence 44455443323455554333322 34556677778777666554
No 430
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.88 E-value=6.1e+02 Score=24.83 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=22.1
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEec
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~ 152 (501)
+.|++|+.. .....+|..+|+|+|.++.
T Consensus 260 ~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 459999763 2578899999999999854
No 431
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.86 E-value=91 Score=30.32 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=30.2
Q ss_pred hhcCCCccceEeccCchhHHHhhh----cCCceEecCCCCc
Q 010775 373 VLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGD 409 (501)
Q Consensus 373 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~D 409 (501)
.|..-++.++|.=||.||..-+.. .++|+|++|-..|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 455667788999999999877643 7999999998766
No 432
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=21.79 E-value=3.7e+02 Score=28.75 Aligned_cols=78 Identities=10% Similarity=0.048 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhc--cCCeeecccC-hHH---------hhcCCCccceEec
Q 010775 318 QQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFVASWCP-QEE---------VLKHPSIGGFLTH 385 (501)
Q Consensus 318 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~--~n~~~~~~vp-q~~---------lL~~~~~~~~I~H 385 (501)
..-+.+++.|++.|.+.++.+.++.. ..+.+.+. +++..+.-.. +.+ +-..+.+ +++|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~--------~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t 83 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAI--------LPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAV--CMAC 83 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCccc--------HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEEC
Confidence 34677888888888888888765542 11222221 1333322111 111 1133444 8888
Q ss_pred cCch------hHHHhhhcCCceEecC
Q 010775 386 CGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 386 GG~g------s~~eal~~GvP~v~~P 405 (501)
.|-| .+++|-..++|+|++.
T Consensus 84 ~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 84 SGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 8855 7899999999999984
No 433
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.58 E-value=3.9e+02 Score=23.34 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=64.9
Q ss_pred ecccChHHhh-cCCCccceEeccC---chhHHHhhhcCCceEecCC--CCchhhhHHhhhhhhcceeeecCCCCCccHHH
Q 010775 365 ASWCPQEEVL-KHPSIGGFLTHCG---WNSIVESLCSGVPMICWPF--TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNE 438 (501)
Q Consensus 365 ~~~vpq~~lL-~~~~~~~~I~HGG---~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~~~g~G~~l~~~~~~~~~~~ 438 (501)
.+--+|..|+ .||++.+-+--.| .-|+.|.-.+|.=-+. |. ..=+..|++.. +++|.=..+.. +..+.++
T Consensus 60 A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~-~rFgfPfI~aV--kg~~k~~ 135 (176)
T COG3195 60 ASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYV-ERFGFPFIIAV--KGNTKDT 135 (176)
T ss_pred CCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHH-HhcCCceEEee--cCCCHHH
Confidence 3444566655 4888743332222 3477777887764421 10 01145689998 88999877777 7888999
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHH
Q 010775 439 VEKLVREMMEGEKGKQMRNKAMEWKGLAE 467 (501)
Q Consensus 439 l~~ai~~vl~~~~~~~~r~~a~~~~~~~~ 467 (501)
|.++..+=|.|.+.+.++..+.++.....
T Consensus 136 Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 136 ILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999888887766667777777665544
No 434
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.55 E-value=74 Score=31.02 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=23.6
Q ss_pred CCCccceEeccCchhHHHhhhc----CCceEecCC
Q 010775 376 HPSIGGFLTHCGWNSIVESLCS----GVPMICWPF 406 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~ 406 (501)
.+++ +|.-||-||+.+++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4566 9999999999999864 778887765
No 435
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=21.53 E-value=74 Score=27.73 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=22.8
Q ss_pred CCCccceEeccCch------hHHHhhhcCCceEecC
Q 010775 376 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 376 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+.+ +++|+|-| .+.||...++|||++.
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3555 89999865 6779999999999984
No 436
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=21.52 E-value=2.4e+02 Score=27.66 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=20.6
Q ss_pred CCCccceEeccCchhHHHh-----hhc--CCceEecCCCC
Q 010775 376 HPSIGGFLTHCGWNSIVES-----LCS--GVPMICWPFTG 408 (501)
Q Consensus 376 ~~~~~~~I~HGG~gs~~ea-----l~~--GvP~v~~P~~~ 408 (501)
++++ +|-=|| ||+... ..+ |+|++.+|...
T Consensus 78 ~~d~--IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 78 EVDA--VIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred CcCE--EEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 4565 998888 454443 223 99999999853
No 437
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.51 E-value=6.5e+02 Score=23.24 Aligned_cols=28 Identities=14% Similarity=0.117 Sum_probs=22.4
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~ 150 (501)
+.+.+|+=.+....+..|+..|+|++.=
T Consensus 91 GA~FiVsP~~~~~v~~~~~~~~i~~iPG 118 (222)
T PRK07114 91 GANFIVTPLFNPDIAKVCNRRKVPYSPG 118 (222)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCCEeCC
Confidence 7788888877777888888888887763
No 438
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.48 E-value=1.4e+02 Score=31.70 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.1
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEe
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~ 151 (501)
+||+||.+. ....+|+++|||++.+.
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 899999875 57789999999998873
No 439
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.46 E-value=1.3e+02 Score=30.99 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010775 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 105 ~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~~~~~A~~lgiP~v~~ 150 (501)
.+.++.+.+++. +||+||.+. ....+|+++|+|++.+
T Consensus 359 d~~el~~~i~~~------~pdliig~~---~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 359 DLWDLESLAKEE------PVDLLIGNS---HGRYLARDLGIPLVRV 395 (428)
T ss_pred CHHHHHHHhhcc------CCCEEEECc---hhHHHHHhcCCCEEEe
Confidence 344555555443 799999997 3578899999999876
No 440
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=21.44 E-value=6.1e+02 Score=24.36 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=42.8
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccc
Q 010775 302 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGG 381 (501)
Q Consensus 302 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~ 381 (501)
+.+..+++|.+. ..+...+...+.++...-+. +...............+.+..+++..+++
T Consensus 152 k~v~IiG~G~iG-------~avA~~L~~~G~~V~v~~R~----------~~~~~~~~~~g~~~~~~~~l~~~l~~aDi-- 212 (287)
T TIGR02853 152 SNVMVLGFGRTG-------MTIARTFSALGARVFVGARS----------SADLARITEMGLIPFPLNKLEEKVAEIDI-- 212 (287)
T ss_pred CEEEEEcChHHH-------HHHHHHHHHCCCEEEEEeCC----------HHHHHHHHHCCCeeecHHHHHHHhccCCE--
Confidence 468999999886 56667777777765544331 11111000111223344445668888998
Q ss_pred eEeccCchhHHH
Q 010775 382 FLTHCGWNSIVE 393 (501)
Q Consensus 382 ~I~HGG~gs~~e 393 (501)
+|.|...+-+.+
T Consensus 213 Vint~P~~ii~~ 224 (287)
T TIGR02853 213 VINTIPALVLTA 224 (287)
T ss_pred EEECCChHHhCH
Confidence 999988764433
No 441
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=21.34 E-value=1.8e+02 Score=29.24 Aligned_cols=43 Identities=9% Similarity=-0.122 Sum_probs=23.0
Q ss_pred hhccccCCCCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEE
Q 010775 292 CLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLW 336 (501)
Q Consensus 292 l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 336 (501)
+.+.+.....+.+++|+-++.. ....++.+.+.|+..+..+.+
T Consensus 14 l~~~~~~~~~~r~livt~~~~~--~~g~~~~v~~~L~~~gi~~~~ 56 (375)
T cd08194 14 TGAVLADLGGKRPLIVTDKVMV--KLGLVDKLTDSLKKEGIESAI 56 (375)
T ss_pred HHHHHHHcCCCeEEEEcCcchh--hcchHHHHHHHHHHCCCeEEE
Confidence 3344443223456667633332 233556677788777766543
No 442
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.27 E-value=1.4e+02 Score=25.08 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-EEEEEeC
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGF-HITFVNT 46 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH-~Vt~~~~ 46 (501)
.+++++.++....+|..-+-.+.++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678999998888999999999999999987 5555443
No 443
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=21.23 E-value=1.1e+02 Score=28.17 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
|+++++-.|-.| ..+|+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 455666555444 67999999999999998763
No 444
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.10 E-value=1.4e+02 Score=31.64 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=22.4
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEe
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~ 151 (501)
+||+||.++ ....+|+++|||++.+.
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 899999986 57778999999998873
No 445
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=21.09 E-value=1.9e+02 Score=24.99 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010775 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (501)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (501)
+++|+++- .+|-+..-.++..|..-|.+|++++|+.+.
T Consensus 2 gl~i~~vG---D~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~ 39 (158)
T PF00185_consen 2 GLKIAYVG---DGHNRVAHSLIELLAKFGMEVVLIAPEGLR 39 (158)
T ss_dssp TEEEEEES---STTSHHHHHHHHHHHHTTSEEEEESSGGGG
T ss_pred CCEEEEEC---CCCChHHHHHHHHHHHcCCEEEEECCCccc
Confidence 56777775 388899999999999999999999997743
No 446
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.08 E-value=1.4e+02 Score=27.92 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=26.8
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch--HHH-HHHHcCCCeEEEecc
Q 010775 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF--TIT-AAQQLGLPIVLFFTI 153 (501)
Q Consensus 103 ~~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~--~~~-~A~~lgiP~v~~~~~ 153 (501)
...++++++. +||+||....... ... +.+.+|+|++.+...
T Consensus 64 ~~n~E~i~~l----------~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 64 TPNYEKIAAL----------KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCHHHHHhc----------CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 3566777654 9999998754432 122 334589999888543
No 447
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=2.1e+02 Score=24.88 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcc----------hHHHHHHHcCCCeEEEeccchh
Q 010775 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLP----------FTITAAQQLGLPIVLFFTISAC 156 (501)
Q Consensus 106 l~~ll~~l~~~~~~~~~~~DlVi~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~ 156 (501)
++.++..+... +-+..||+|++..-.- -+..+|+++|+|++-.+.+...
T Consensus 109 vrnWlSQL~~h--AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 109 VRNWLSQLQTH--AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHHHHHHHHHh--hccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 46777666542 3355899999865432 3677899999999887655443
No 448
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=20.90 E-value=4.6e+02 Score=27.97 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCCccceEeccCch------hHHHhhhcCCceEecC
Q 010775 376 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 376 ~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
.+.+ +++|.|-| .+++|.+.++|+|++-
T Consensus 70 ~~~v--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 70 KVGV--CVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CCeE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4555 99998855 7889999999999984
No 449
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=20.89 E-value=2.5e+02 Score=25.33 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=26.0
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEe
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~ 151 (501)
+..+||+|.-...++..|++.|||++.+.
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLD 57 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEec
Confidence 68999999878789999999999998873
No 450
>PRK10037 cell division protein; Provisional
Probab=20.88 E-value=1.5e+02 Score=27.82 Aligned_cols=29 Identities=14% Similarity=-0.002 Sum_probs=25.2
Q ss_pred CCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 19 PFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 19 ~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
|+-|-..-...||..|+++|++|.++=..
T Consensus 11 GGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 35599999999999999999999998543
No 451
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=20.87 E-value=1.4e+02 Score=30.61 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.9
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEE
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLF 150 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~ 150 (501)
+||++|... .+..+|+++|||.+.+
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~ 374 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYY 374 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEe
Confidence 899999883 4778999999999886
No 452
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=20.77 E-value=1.2e+02 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchHHHhh
Q 010775 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (501)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 55 (501)
.|.+.|+++|.++|.+|.+.=|-........
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHh
Confidence 6999999999999999998877554444433
No 453
>PRK09620 hypothetical protein; Provisional
Probab=20.74 E-value=1e+02 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCC
Q 010775 27 MLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~ 47 (501)
-..||++|.++|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 368999999999999998753
No 454
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=20.63 E-value=2.2e+02 Score=27.19 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=32.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (501)
-.|+|+..++.|-..-...||..|++.|+.|.+++...+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 355566666779999999999999999999999997754
No 455
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=20.59 E-value=1.4e+02 Score=30.35 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Q 010775 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (501)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (501)
|+|.++-.|..| +.+|..|+++||+|+++...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 578888777666 67899999999999998653
No 456
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.59 E-value=2.1e+02 Score=29.53 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 010775 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (501)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (501)
++..|+|+..++.|-..-...||..|.+.|+.|.+++...++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3457778888888999999999999999999999999876644
No 457
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.45 E-value=1.5e+02 Score=30.41 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=21.9
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEec
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~ 152 (501)
+||++|.+. ....+|+++|+|++.+..
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 799999986 455678999999998733
No 458
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.40 E-value=3e+02 Score=23.93 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=24.0
Q ss_pred CccCHHHHHHHHHHHHhCCCEEEEEeCCc-chHHHhhh
Q 010775 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEF-NHRRLLKA 56 (501)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~-~~~~~~~~ 56 (501)
+.|++.| |+..|+++|.+|..++.+. ..+.+..+
T Consensus 114 gD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~a 148 (160)
T TIGR00288 114 RDADFLP---VINKAKENGKETIVIGAEPGFSTALQNS 148 (160)
T ss_pred ccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHHh
Confidence 5677665 5677888899999999654 44444443
No 459
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=20.31 E-value=4.1e+02 Score=26.24 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=21.9
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEec
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFFT 152 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~~ 152 (501)
+.|++|+... ....+|..+|+|+|.++-
T Consensus 262 ~a~l~v~nDS--Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVDS--APAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 4599997642 567889999999999854
No 460
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.30 E-value=2.7e+02 Score=27.22 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=75.4
Q ss_pred hhhhhccccCCCCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeeccc
Q 010775 289 ETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC 368 (501)
Q Consensus 289 ~~~l~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~v 368 (501)
.+++.+++.......+-.-++||++. -.++++.+.-|.+.+.+..... +. .=..|. ...+.+++.+|-
T Consensus 4 r~~ileil~~Y~~~~i~Iat~gSHSa------L~Il~GAK~EGF~Ti~v~~~gr-~~----~Y~~f~-~a~e~i~v~~f~ 71 (361)
T COG1759 4 RKEILEILENYDLEDITIATIGSHSA------LQILDGAKEEGFRTIAVCQRGR-EK----PYEKFP-VADEVIIVDKFS 71 (361)
T ss_pred HHHHHHHHHhccccceEEEEeecchH------HHHhhhHHhcCCcEEEEEecCc-cc----hHHhhc-hhheEEEechhH
Confidence 34567777776444577788888853 4467777888877666554221 10 111111 112445555554
Q ss_pred C------hHHhhcCCCccceEeccCchhHHHhhhcCCc----eEecCCC---------CchhhhHHhhhhhhcceeeecC
Q 010775 369 P------QEEVLKHPSIGGFLTHCGWNSIVESLCSGVP----MICWPFT---------GDQPTNGRYVCNEWGVGMEING 429 (501)
Q Consensus 369 p------q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP----~v~~P~~---------~DQ~~na~rv~~~~g~G~~l~~ 429 (501)
+ |..++..-.+ ||.||.. +.|.|+= -..+|++ .||..--..+ + +.|+.++.
T Consensus 72 dil~~~iqe~L~~~n~I--~IP~gSf-----v~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lL-e--kAgi~~P~ 141 (361)
T COG1759 72 DILNEEIQEELRELNAI--FIPHGSF-----VAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLL-E--KAGLRIPK 141 (361)
T ss_pred HHhhHHHHHHHHHcCeE--EecCCce-----EEEecchhhhhcccCcccccHhHhhhhcchhhHHHHH-H--HcCCCCCc
Confidence 3 4557777888 9999876 3444532 2334443 2555555555 5 46777875
Q ss_pred CCCCccHHHHHHHH
Q 010775 430 DDEDVIRNEVEKLV 443 (501)
Q Consensus 430 ~~~~~~~~~l~~ai 443 (501)
.--++|++.+-|
T Consensus 142 --~~~~PeeIdr~V 153 (361)
T COG1759 142 --KYKSPEEIDRPV 153 (361)
T ss_pred --ccCChHHcCCce
Confidence 455588877654
No 461
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=20.29 E-value=6.6e+02 Score=26.72 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCccceEeccCch------hHHHhhhcCCceEec
Q 010775 377 PSIGGFLTHCGWN------SIVESLCSGVPMICW 404 (501)
Q Consensus 377 ~~~~~~I~HGG~g------s~~eal~~GvP~v~~ 404 (501)
+.+ +++|.|-| .+++|-+.++|+|++
T Consensus 72 ~gv--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 72 PGI--CFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CEE--EEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 445 99999865 788999999999987
No 462
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=20.26 E-value=64 Score=26.20 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=35.2
Q ss_pred hhcCCceEecCCCCchhhhHHhhhhhhcceeeecC----------CC--CCccHHHHHHHHHHH
Q 010775 395 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING----------DD--EDVIRNEVEKLVREM 446 (501)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~rv~~~~g~G~~l~~----------~~--~~~~~~~l~~ai~~v 446 (501)
++|+.++...|..+|.-.|+-|+ .+ |.-.-++. .. ...+.|++..+|+-+
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRi-aq-G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M 121 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRI-AQ-GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFM 121 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHH-Hh-chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHH
Confidence 56777889999999999999999 55 55322211 00 357888888888643
No 463
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=20.22 E-value=2.2e+02 Score=27.74 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=43.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhccCCeeecccChHHhhcCCCccceEeccCchhHHH
Q 010775 314 FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVE 393 (501)
Q Consensus 314 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~n~~~~~~vpq~~lL~~~~~~~~I~HGG~gs~~e 393 (501)
..+.+..+.+.+++.....+.||..+++... .++.++++...+-.||.. ||-..-.-+++-
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~-----------------~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDDS-----------------NELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccCH-----------------hhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 3445667789999999889999998765421 133444444444445544 555555555555
Q ss_pred hhh--cCCceEecCC
Q 010775 394 SLC--SGVPMICWPF 406 (501)
Q Consensus 394 al~--~GvP~v~~P~ 406 (501)
+++ +|.+.+-=|.
T Consensus 110 al~~~~g~~t~hGp~ 124 (308)
T cd07062 110 AIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHhcCCeEEECcc
Confidence 542 2444444443
No 464
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=20.20 E-value=1.9e+02 Score=31.02 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=48.3
Q ss_pred ChHHhhcCCCccceEec-cCch-hHHHhhhcCCceEecCCCC-chhhhHHhh-hhhhcceeeecCCCCCccHHHHHHHHH
Q 010775 369 PQEEVLKHPSIGGFLTH-CGWN-SIVESLCSGVPMICWPFTG-DQPTNGRYV-CNEWGVGMEINGDDEDVIRNEVEKLVR 444 (501)
Q Consensus 369 pq~~lL~~~~~~~~I~H-GG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~rv-~~~~g~G~~l~~~~~~~~~~~l~~ai~ 444 (501)
++.+++.-++++.|-+= =-|| |-+||++.|||.|.-=+.+ -++.+-..- ....|+-+.-+ ...+.++..+.|.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR---~~~n~~e~v~~la 538 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDR---RDKNYDESVNQLA 538 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-S---SSS-HHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeC---CCCCHHHHHHHHH
Confidence 45555655665333320 0122 8999999999999877643 222111100 02245554433 5677777777776
Q ss_pred HHhcC-----h-hhHHHHHHHHHHHHHH
Q 010775 445 EMMEG-----E-KGKQMRNKAMEWKGLA 466 (501)
Q Consensus 445 ~vl~~-----~-~~~~~r~~a~~~~~~~ 466 (501)
+.|.+ . +-...|++|+++++.+
T Consensus 539 ~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 539 DFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 66532 1 2235788888877653
No 465
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.16 E-value=6e+02 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCccceEeccCch------hHHHhhhcCCceEecC
Q 010775 377 PSIGGFLTHCGWN------SIVESLCSGVPMICWP 405 (501)
Q Consensus 377 ~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 405 (501)
+.+ ++.|.|-| .+++|...++|||++-
T Consensus 68 ~gv--~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGV--VLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 555 99998855 7889999999999984
No 466
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.15 E-value=1.5e+02 Score=26.04 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch-HHHHHHHcCCCeEEEec
Q 010775 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF-TITAAQQLGLPIVLFFT 152 (501)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~~DlVi~D~~~~~-~~~~A~~lgiP~v~~~~ 152 (501)
..++.+++. +||+||....... ...--++.|+|++.+..
T Consensus 51 ~n~E~l~~l----------~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 51 PNVEKIVAL----------KPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CCHHHHhcc----------CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 456666544 9999998654332 34455778999888743
No 467
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.09 E-value=1.1e+02 Score=31.53 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=22.1
Q ss_pred CeeEEEEcCCcchHHHHHHHcCCCeEEEe
Q 010775 123 AVSCIISDGFLPFTITAAQQLGLPIVLFF 151 (501)
Q Consensus 123 ~~DlVi~D~~~~~~~~~A~~lgiP~v~~~ 151 (501)
+||++|.... ...+|+++|||+..+.
T Consensus 369 ~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 369 KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 8999998874 6678999999998764
No 468
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=20.05 E-value=8.6e+02 Score=24.11 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=30.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHH-hCCCEEEEEeCCcch
Q 010775 14 VCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNH 50 (501)
Q Consensus 14 l~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~ 50 (501)
+|.-.++-|-..-.-.|+..|. ++|+.|.++....+.
T Consensus 3 ~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 4556677788888899999997 689999999887654
Done!