Query 010776
Match_columns 501
No_of_seqs 123 out of 216
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2238 Uncharacterized conser 100.0 8.5E-56 1.8E-60 479.6 1.2 461 1-497 6-485 (795)
2 PF10296 DUF2404: Putative int 99.9 1E-26 2.2E-31 196.6 12.1 91 352-442 1-91 (91)
3 KOG2238 Uncharacterized conser 98.7 4E-09 8.6E-14 117.2 1.7 98 344-446 500-598 (795)
4 cd01260 PH_CNK Connector enhan 98.0 3E-05 6.5E-10 65.1 8.3 72 99-183 22-96 (96)
5 PF00169 PH: PH domain; Inter 98.0 6.3E-05 1.4E-09 60.5 9.9 80 98-184 18-103 (104)
6 cd01246 PH_oxysterol_bp Oxyste 97.7 0.00015 3.2E-09 58.9 8.2 73 96-183 14-91 (91)
7 cd01250 PH_centaurin Centaurin 97.7 0.00019 4E-09 58.7 7.9 74 97-183 16-94 (94)
8 cd01252 PH_cytohesin Cytohesin 97.5 0.00063 1.4E-08 60.3 9.5 83 98-187 17-116 (125)
9 cd01233 Unc104 Unc-104 pleckst 97.3 0.0012 2.6E-08 56.7 8.4 74 99-182 20-96 (100)
10 cd00821 PH Pleckstrin homology 97.3 0.0017 3.7E-08 50.4 8.6 75 97-183 16-96 (96)
11 cd01264 PH_melted Melted pleck 97.3 0.0016 3.4E-08 57.4 8.6 76 99-183 21-100 (101)
12 cd01237 Unc112 Unc-112 pleckst 97.2 0.0016 3.4E-08 58.1 8.0 79 99-186 22-105 (106)
13 smart00233 PH Pleckstrin homol 97.2 0.0036 7.7E-08 49.0 8.9 78 97-184 18-101 (102)
14 cd01253 PH_beta_spectrin Beta- 97.1 0.0026 5.6E-08 54.2 7.9 73 99-183 25-104 (104)
15 cd01238 PH_Tec Tec pleckstrin 96.8 0.011 2.4E-07 51.5 9.5 79 96-182 20-105 (106)
16 cd01219 PH_FGD FGD (faciogenit 96.6 0.013 2.9E-07 50.5 8.8 74 97-184 18-99 (101)
17 cd01257 PH_IRS Insulin recepto 96.5 0.012 2.7E-07 51.5 8.2 70 99-181 16-99 (101)
18 cd01244 PH_RasGAP_CG9209 RAS_G 96.5 0.013 2.9E-07 51.1 8.3 76 96-182 20-97 (98)
19 cd01251 PH_centaurin_alpha Cen 96.5 0.019 4.1E-07 49.8 8.9 79 99-184 18-100 (103)
20 cd00900 PH-like Pleckstrin hom 96.4 0.028 6.1E-07 43.9 8.7 77 97-183 19-99 (99)
21 cd01247 PH_GPBP Goodpasture an 96.3 0.022 4.8E-07 48.5 8.1 68 99-181 17-89 (91)
22 cd01263 PH_anillin Anillin Ple 96.2 0.016 3.4E-07 52.7 6.8 85 99-183 21-122 (122)
23 cd01245 PH_RasGAP_CG5898 RAS G 96.1 0.028 6.1E-07 49.2 7.9 72 100-182 19-97 (98)
24 cd01235 PH_SETbf Set binding f 96.0 0.053 1.1E-06 45.4 9.1 77 99-183 17-100 (101)
25 COG5038 Ca2+-dependent lipid-b 96.0 0.0074 1.6E-07 71.0 5.0 80 346-428 221-300 (1227)
26 cd01265 PH_PARIS-1 PARIS-1 ple 95.9 0.043 9.3E-07 46.9 8.2 70 99-183 19-93 (95)
27 cd01218 PH_phafin2 Phafin2 Pl 95.8 0.058 1.3E-06 47.7 8.5 74 100-186 21-100 (104)
28 cd01236 PH_outspread Outspread 95.6 0.052 1.1E-06 48.0 7.7 94 65-181 1-101 (104)
29 cd01220 PH_CDEP Chondrocyte-de 95.5 0.082 1.8E-06 46.1 8.4 73 100-185 19-98 (99)
30 cd01241 PH_Akt Akt pleckstrin 95.5 0.05 1.1E-06 47.0 7.0 72 99-183 19-101 (102)
31 cd01266 PH_Gab Gab (Grb2-assoc 95.5 0.063 1.4E-06 46.6 7.7 77 98-182 20-106 (108)
32 cd01230 PH_EFA6 EFA6 Pleckstri 95.1 0.16 3.4E-06 45.9 9.0 76 99-186 28-113 (117)
33 cd01243 PH_MRCK MRCK (myotonic 91.4 1 2.2E-05 41.5 7.9 94 81-182 9-117 (122)
34 PF15413 PH_11: Pleckstrin hom 91.1 0.5 1.1E-05 41.7 5.6 30 154-183 83-112 (112)
35 PF01102 Glycophorin_A: Glycop 89.4 0.48 1E-05 43.4 4.2 28 6-33 67-94 (122)
36 cd01249 PH_oligophrenin Oligop 89.3 1.1 2.4E-05 40.1 6.2 71 98-180 18-101 (104)
37 cd01224 PH_Collybistin Collybi 88.5 2 4.4E-05 38.8 7.4 56 119-181 47-104 (109)
38 cd01261 PH_SOS Son of Sevenles 87.5 3.9 8.5E-05 36.8 8.6 73 99-183 22-108 (112)
39 cd01256 PH_dynamin Dynamin ple 86.5 3.7 7.9E-05 37.1 7.7 76 100-180 22-101 (110)
40 cd01254 PH_PLD Phospholipase D 82.7 6.1 0.00013 35.4 7.6 78 98-183 34-121 (121)
41 PF01034 Syndecan: Syndecan do 79.8 0.63 1.4E-05 38.5 0.3 49 4-65 10-58 (64)
42 PF15410 PH_9: Pleckstrin homo 71.9 31 0.00068 30.6 8.9 72 101-184 30-118 (119)
43 PF15409 PH_8: Pleckstrin homo 70.6 22 0.00047 31.1 7.3 69 98-183 15-88 (89)
44 cd01223 PH_Vav Vav pleckstrin 68.8 20 0.00043 32.9 7.0 98 64-186 5-113 (116)
45 PF03229 Alpha_GJ: Alphavirus 68.2 6.5 0.00014 36.2 3.7 35 4-38 84-119 (126)
46 PF15405 PH_5: Pleckstrin homo 64.9 5.9 0.00013 36.5 2.9 80 100-183 20-134 (135)
47 cd01259 PH_Apbb1ip Apbb1ip (Am 57.0 51 0.0011 30.3 7.3 94 65-183 2-107 (114)
48 PF13782 SpoVAB: Stage V sporu 56.1 14 0.0003 33.6 3.6 30 2-31 54-84 (110)
49 cd01242 PH_ROK Rok (Rho- assoc 53.5 89 0.0019 28.7 8.2 76 98-181 21-107 (112)
50 KOG3532 Predicted protein kina 50.5 17 0.00038 42.2 4.0 92 346-437 99-218 (1051)
51 PF11511 RhodobacterPufX: Intr 49.7 33 0.00072 28.8 4.5 36 6-44 27-62 (67)
52 PF08374 Protocadherin: Protoc 49.5 9.9 0.00022 38.3 1.7 22 4-25 39-60 (221)
53 PF11240 DUF3042: Protein of u 49.1 28 0.00061 28.1 3.9 29 1-29 1-29 (54)
54 KOG1631 Translocon-associated 47.9 32 0.00068 35.3 4.9 16 3-18 185-200 (261)
55 cd01228 PH_BCR-related BCR (br 46.8 21 0.00045 31.9 3.1 24 158-181 68-91 (96)
56 PF11216 DUF3012: Protein of u 45.2 20 0.00042 26.2 2.2 26 174-204 4-29 (32)
57 PRK13707 conjugal transfer pil 45.1 20 0.00043 31.8 2.8 29 3-31 35-63 (101)
58 smart00328 BPI1 BPI/LBP/CETP N 41.7 1.6E+02 0.0035 28.8 8.8 27 366-392 8-34 (225)
59 cd01226 PH_exo84 Exocyst compl 40.8 1.5E+02 0.0033 26.5 7.6 54 118-184 45-98 (100)
60 cd01262 PH_PDK1 3-Phosphoinosi 39.1 1.6E+02 0.0034 26.0 7.3 21 163-184 68-88 (89)
61 cd01222 PH_clg Clg (common-sit 38.9 2E+02 0.0042 25.4 8.0 72 100-183 19-94 (97)
62 PF06305 DUF1049: Protein of u 37.8 36 0.00079 26.9 3.0 10 4-13 28-37 (68)
63 PRK11486 flagellar biosynthesi 37.6 37 0.00081 31.5 3.4 22 10-31 22-43 (124)
64 COG3086 RseC Positive regulato 36.4 61 0.0013 31.1 4.7 24 18-41 112-135 (150)
65 PF14593 PH_3: PH domain; PDB: 34.1 2.8E+02 0.0061 24.8 8.3 68 97-183 27-98 (104)
66 KOG0930 Guanine nucleotide exc 33.8 1.6E+02 0.0035 31.4 7.6 82 99-187 279-378 (395)
67 cd01258 PH_syntrophin Syntroph 33.6 99 0.0022 28.0 5.4 76 99-181 21-106 (108)
68 PF07178 TraL: TraL protein; 33.6 46 0.001 28.8 3.2 31 3-33 29-59 (95)
69 PF01273 LBP_BPI_CETP: LBP / B 32.3 90 0.002 28.3 5.1 27 367-393 4-30 (164)
70 PF07584 BatA: Aerotolerance r 29.0 58 0.0013 26.8 3.0 17 1-17 1-18 (77)
71 COG3190 FliO Flagellar biogene 26.3 95 0.0021 29.4 4.1 26 6-31 24-49 (137)
72 PF06596 PsbX: Photosystem II 25.9 98 0.0021 23.6 3.3 23 4-26 8-30 (39)
73 TIGR02762 TraL_TIGR type IV co 23.7 93 0.002 27.1 3.4 19 3-21 29-47 (95)
74 PF12814 Mcp5_PH: Meiotic cell 23.6 3.4E+02 0.0074 24.4 7.1 78 97-182 30-119 (123)
75 PF13373 DUF2407_C: DUF2407 C- 23.5 39 0.00084 31.7 1.0 20 2-29 94-113 (140)
76 PF05550 Peptidase_C53: Pestiv 23.1 87 0.0019 30.2 3.3 39 91-129 101-141 (168)
77 PF05084 GRA6: Granule antigen 22.9 1E+02 0.0022 30.4 3.7 25 9-33 153-177 (215)
78 PF02529 PetG: Cytochrome B6-F 22.8 1.1E+02 0.0024 23.0 3.1 25 4-28 5-29 (37)
79 CHL00008 petG cytochrome b6/f 21.7 1.7E+02 0.0036 22.1 3.8 26 3-28 4-29 (37)
80 PRK01026 tetrahydromethanopter 21.7 1.1E+02 0.0024 26.5 3.3 24 2-25 50-73 (77)
81 PRK00665 petG cytochrome b6-f 21.6 1.7E+02 0.0037 22.1 3.8 26 3-28 4-29 (37)
82 KOG1117 Rho- and Arf-GTPase ac 20.1 1.3E+02 0.0028 36.3 4.5 102 65-187 164-282 (1186)
No 1
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=100.00 E-value=8.5e-56 Score=479.63 Aligned_cols=461 Identities=38% Similarity=0.561 Sum_probs=389.2
Q ss_pred Ccc-chhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCcccCCccc--hhHHhhhccceEEEeCCC--
Q 010776 1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQ--SLEFAYKKQGYVWVLEPE-- 75 (501)
Q Consensus 1 ~~~-~~~~f~~G~l~l~~~e~~~~~~~~~rl~~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~Wv~~~~-- 75 (501)
||+ |++|+|+|.++.+-++..+++|+.++++++ .++++..+.. +.+..+.+|.| +.+|++++||++||.+++
T Consensus 6 ~~~~fl~~~llg~vt~ls~~~~~~~~l~~~ln~~-~~k~esk~~~--d~~~~d~~~~q~~~~~~s~~pq~~~~i~el~e~ 82 (795)
T KOG2238|consen 6 GFGVFLAGYLLGGVTFLPAELFGLLYLLKHLNYS-LDKIESKSES--DPSTKDFIPRQTRSIDFSINPQGVVKIQELEEQ 82 (795)
T ss_pred cchhhhhhhhhcceeechHHHHHHHHhhhhhhHH-Hhhhcccccc--CcccccccccccccccccCCcccchhhhcchhh
Confidence 344 999999999999999999999999999988 5555555554 99999999888 999999999999999975
Q ss_pred CCCc--cccchHHHhhc---cceeeccceeeeEeeCceEEEecC-CCCccEEecCCcEEEEEeCCCccccccccccCeeE
Q 010776 76 KVPK--EKFSKEQKKKK---EFLEVYPVRKYAKIKHRALILTST-DGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKV 149 (501)
Q Consensus 76 ~~~k--~k~~ke~k~kk---~~~ev~P~~k~a~lk~~~L~L~~~-Dg~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkv 149 (501)
..++ -|.+++|+++. .+.++.|+|.|+.++|+.++|.+. |+..+++-|.||.|.+++.+-++.++||++||||+
T Consensus 83 ~~~~~ssk~~~~q~K~~~~~~~~~~~~~r~~~~i~d~~t~~~~~~d~~~~~~~l~~~~v~~~s~~~l~v~~~~~~f~iK~ 162 (795)
T KOG2238|consen 83 LLVKMSSKGPKTQKKQRYYHGLENAHPLRNFARIKDHKTALQDQIDPAQTPSFLLGCFVLAKSGSFLPVRKWHKRFPIKV 162 (795)
T ss_pred hhhhhcccCchhhceeeccCCcchhhhhhhhhhhhhhhhhhhcccccccchhhhhhcccccccccchhhhhhcccceeec
Confidence 3333 29999999988 799999999999999999999995 99998999999999999999999999999999999
Q ss_pred ecCCc--ccccCceEEEEEecCchhHHHHHHHHHHhhccccchhhH--HHHHHHHHHHHHhhhhccCCcccCCCCCCCCC
Q 010776 150 ENKSS--VLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEW--FTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGE 225 (501)
Q Consensus 150 e~~~~--~iy~~sKv~~~y~eTs~EKEsWc~aLr~As~~~k~~~~w--~~kl~~~F~~yl~sl~~~~p~~~k~s~g~~ge 225 (501)
+.... .+|.+..|+|+||+|+|+|++||++||+|.++++++..| .++++.+|+.|...++.-||.||+|+.|
T Consensus 163 ~s~~~~l~~~~~~~v~~~f~~ts~~k~s~~~~l~~~~~e~~~~~~~~~~~l~k~D~r~~~~~~~vIy~g~mk~~~~---- 238 (795)
T KOG2238|consen 163 ESQISNLVTYIGNQVFLIFFETSWEKESWCKKLRLALDENQERFHWTCSALLKEDTRSLDAKLGVIYPGFMKPSSG---- 238 (795)
T ss_pred ccccceeEeeecceeeeeeeeccccccchhhhhcccCChhHhhhhhhhhhccCccchhhcccCCeeeecccCcccc----
Confidence 99988 789999999999999999999999999999999999999 6999999999999999999999999987
Q ss_pred CCCCCCCcccccccccCCCCchHHHHHHHHHHHhhcCCCcccccccccccchhhhhccccCCccccccccccccccCCCC
Q 010776 226 SPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKV 305 (501)
Q Consensus 226 ~~~~~~~~e~~dr~~~~dgs~sk~R~~~kklakk~s~~~~~~k~~~~~~~~~erK~~~k~~s~~~~~~~~s~~~a~~~~~ 305 (501)
|+.|..|... +.++++|++++++-.+...+++.- -. ++++|.+.. ..|+.--.++++.....+
T Consensus 239 -----~s~e~~dk~t---t~s~~Vrl~g~~~~~k~~~k~v~k-----~a-~~dp~~~~~--~~q~s~~~~~s~i~l~pk- 301 (795)
T KOG2238|consen 239 -----FSSENLDKGT---THSSKVRLEGSMFSFKRSDKNVDK-----EA-RDDPTTNSS--LSQNSYSNGSSTISLDPK- 301 (795)
T ss_pred -----CCcccccccc---ccceEEEecccceeEecccccccc-----hh-hcccccccc--ccccccccCCCceecCch-
Confidence 6677777654 446999999999988765443321 11 555555331 333332111211000000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccc---cccccCCCCCccccCcchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcC
Q 010776 306 PNCSGEENAEPLSSTFPRSKSQSQL---SVVSDADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSN 382 (501)
Q Consensus 306 ~~~s~~~~~~~s~s~ss~~s~~~~~---s~~~d~ds~~~~~ide~t~WlNaLIgRLFfd~~rt~~l~~~I~~KIqKKL~k 382 (501)
..++ -.+.....+. ..+.+.|+.++...|+.|.|+|+++||+||++.+...+.+.+++|||+++++
T Consensus 302 ----~~a~-------~~~~~tk~pi~ir~~sh~~ds~skte~d~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~ 370 (795)
T KOG2238|consen 302 ----RLAN-------NRHWKTKVPIQIRFGSHDRDSESKTETDEGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSK 370 (795)
T ss_pred ----hhhc-------cccccccCceEEEecccccccccccccchhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhc
Confidence 0000 0011111111 1112666777777899999999999999999999966999999999999999
Q ss_pred CCCCCCCCceEEeEeecCCCCCeeecccccCCCCCCcEEEEEEEEEcCceEEEEEeEEEeeccccccchhcccccccCCC
Q 010776 383 MRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAV 462 (501)
Q Consensus 383 IklPsFI~~I~VteIDlG~s~P~It~~rlp~ld~~G~~~vE~Dv~Y~Ggl~LtIeTkLnLr~~~lq~~i~~~~~~e~~s~ 462 (501)
|++|.|++++.+..+|.|+.+|+||.+++.++.+.|.|.++.||.|.|+.++.|+|+|+.++.+.|.+|+..... +...
T Consensus 371 ~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~di~y~~d~~~~i~~~v~~~e~~~~~~ie~~~~q-p~k~ 449 (795)
T KOG2238|consen 371 MRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEIDIEYRGDLTIIIETRVDIREGSRQKGIEESLLQ-PKKI 449 (795)
T ss_pred cccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccceeeccccccccccccchhhhhhcchhhhhhhC-cchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred CCCchhhhhhHHH-hhcccCCCCCCccCcccCCCCC
Q 010776 463 GDVSSDLLEGFEY-FGKQLNISEGTFDGQDHKDQGD 497 (501)
Q Consensus 463 g~v~s~l~~g~~~-~g~ql~~~~~~~~~~~~~~~~~ 497 (501)
|.+++.+++++++ |-+|+..+..|++.++.+.+..
T Consensus 450 ~~~~s~l~~~~~d~~~kq~~~~~~t~~~~~~~~~~~ 485 (795)
T KOG2238|consen 450 ELVKSPLLEGLKDPFEKQIWVPFSTVSAQDVESESI 485 (795)
T ss_pred cccCchhhhhccchhhhceeeeccccCCCccccccc
Confidence 9999999999997 9999999999999999988654
No 2
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.94 E-value=1e-26 Score=196.56 Aligned_cols=91 Identities=33% Similarity=0.646 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHhcCCCCCCCCCceEEeEeecCCCCCeeecccccCCCCCCcEEEEEEEEEcCc
Q 010776 352 NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGG 431 (501)
Q Consensus 352 NaLIgRLFfd~~rt~~l~~~I~~KIqKKL~kIklPsFI~~I~VteIDlG~s~P~It~~rlp~ld~~G~~~vE~Dv~Y~Gg 431 (501)
|||+||+||++++++.+.++|+++||+||+++++|+||++|.|++||+|+++|.|+++++++++++|.+.+++||.|+|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred eEEEEEeEEEe
Q 010776 432 VVLDVETRLEV 442 (501)
Q Consensus 432 l~LtIeTkLnL 442 (501)
++|+|+|+|+|
T Consensus 81 ~~l~l~t~l~~ 91 (91)
T PF10296_consen 81 FSLTLETKLNI 91 (91)
T ss_pred eEEEEEEEEEC
Confidence 99999999986
No 3
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=98.71 E-value=4e-09 Score=117.24 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=92.9
Q ss_pred cCcchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcCCCCCCCCCceEEeEeecCCCCCeeecccccCC-CCCCcEEE
Q 010776 344 VDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPT-DMNEVWAF 422 (501)
Q Consensus 344 ide~t~WlNaLIgRLFfd~~rt~~l~~~I~~KIqKKL~kIklPsFI~~I~VteIDlG~s~P~It~~rlp~l-d~~G~~~v 422 (501)
+.+..+|.|+|..|||+++.+++.|.....++|+.||..+.+|+|++.+... |.++|-|.+.-.+.+ ++.|+| .
T Consensus 500 ~~~~s~~~~~L~~ri~~~f~~d~~~ls~~~s~lr~kl~~~~~P~~~~~l~~~----~ta~pdi~~~~~~~v~e~~~~~-~ 574 (795)
T KOG2238|consen 500 SAEKSKWKSALKERIVEQFSDDPIWLSIVSSSLRGKLWEHMKPPPSDQLWFG----FTAAPDILQALASKVGEHKITG-G 574 (795)
T ss_pred hhhhhhhHHHhhhheeecccCCceeecchhhhhhheehhccCCchhhhhhhc----cccchhHHHHhhhhhccccccc-c
Confidence 3578899999999999999999999999999999999999999999999998 999999999999998 999999 9
Q ss_pred EEEEEEcCceEEEEEeEEEeeccc
Q 010776 423 EVDIEYAGGVVLDVETRLEVRELD 446 (501)
Q Consensus 423 E~Dv~Y~Ggl~LtIeTkLnLr~~~ 446 (501)
++.+.|.|++.+.++|++||-.+.
T Consensus 575 d~~ms~~~~~~~~~rt~~nL~~l~ 598 (795)
T KOG2238|consen 575 DVAMSYIGRFLTALRTKMNLPKLQ 598 (795)
T ss_pred hHHHHHHhhHHHHHHhhhcccccc
Confidence 999999999999999999997773
No 4
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.00 E-value=3e-05 Score=65.11 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=59.1
Q ss_pred eeeeEeeCceEEEecCCCC---ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHHH
Q 010776 99 RKYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA 175 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~Dg~---~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEs 175 (501)
+||++|+++.|+....++. ..+|+|.||.|..+.. .+ |+|.++|.+|+ .+++||.+||--|.+.
T Consensus 22 krwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~-----~~--k~~~F~I~~~~------~~~~~f~a~s~~e~~~ 88 (96)
T cd01260 22 RRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKE-----VK--KKYAFKVCHPV------YKSFYFAAETLDDLSQ 88 (96)
T ss_pred eEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchh-----cC--CceEEEECCCC------CcEEEEEeCCHHHHHH
Confidence 5799999999999977553 4689999998876643 12 67889998775 3678999999999999
Q ss_pred HHHHHHHh
Q 010776 176 WCKALRLA 183 (501)
Q Consensus 176 Wc~aLr~A 183 (501)
|-.|||.|
T Consensus 89 Wi~ai~~~ 96 (96)
T cd01260 89 WVNHLITA 96 (96)
T ss_pred HHHHHHhC
Confidence 99999965
No 5
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.00 E-value=6.3e-05 Score=60.52 Aligned_cols=80 Identities=16% Similarity=0.332 Sum_probs=66.3
Q ss_pred ceeeeEeeCceEEEecCCC---C---ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCch
Q 010776 98 VRKYAKIKHRALILTSTDG---S---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (501)
Q Consensus 98 ~~k~a~lk~~~L~L~~~Dg---~---~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~ 171 (501)
-++|++|.++.|++...+. . ...|+|.+|.|........ ...-...+.+.|.++.. +.++|+++|--
T Consensus 18 k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~-~~~~~~~~~f~i~~~~~------~~~~~~~~s~~ 90 (104)
T PF00169_consen 18 KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDF-LSNKKRKNCFEITTPNG------KSYLFSAESEE 90 (104)
T ss_dssp EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTS-TSTSSSSSEEEEEETTS------EEEEEEESSHH
T ss_pred EEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCcccc-ccccCCCcEEEEEeCCC------cEEEEEcCCHH
Confidence 3689999999999998866 2 4689999998888877531 14456778888887775 89999999999
Q ss_pred hHHHHHHHHHHhh
Q 010776 172 EKEAWCKALRLAS 184 (501)
Q Consensus 172 EKEsWc~aLr~As 184 (501)
+++.|..+|+.|.
T Consensus 91 ~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 91 ERKRWIQAIQKAI 103 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 6
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.75 E-value=0.00015 Score=58.87 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=57.2
Q ss_pred ccceeeeEeeCceEEEecCCC-----CccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCc
Q 010776 96 YPVRKYAKIKHRALILTSTDG-----SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETS 170 (501)
Q Consensus 96 ~P~~k~a~lk~~~L~L~~~Dg-----~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs 170 (501)
..-++|++|+++.|++..... ...+|+|.+|.|..-. + ++|-+.|..++ .++++|.++|.
T Consensus 14 ~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~-----~----~~~~F~i~~~~------~~~~~~~a~s~ 78 (91)
T cd01246 14 GWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDD-----S----DDKCFTIDTGG------DKTLHLRANSE 78 (91)
T ss_pred CceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECC-----C----CCcEEEEEcCC------CCEEEEECCCH
Confidence 356789999999999987743 2468999999865421 1 26778887543 38999999999
Q ss_pred hhHHHHHHHHHHh
Q 010776 171 WEKEAWCKALRLA 183 (501)
Q Consensus 171 ~EKEsWc~aLr~A 183 (501)
-|++.|..||+.|
T Consensus 79 ~e~~~Wi~al~~a 91 (91)
T cd01246 79 EERQRWVDALELA 91 (91)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999965
No 7
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.69 E-value=0.00019 Score=58.65 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=58.8
Q ss_pred cceeeeEeeCceEEEecCCC-----CccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCch
Q 010776 97 PVRKYAKIKHRALILTSTDG-----SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (501)
Q Consensus 97 P~~k~a~lk~~~L~L~~~Dg-----~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~ 171 (501)
-.++||+|+++.|++....- ....|+|.+|+|..++... .++|.+.|..++ ++++|.++|.-
T Consensus 16 W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~~-------~~~~f~a~s~~ 82 (94)
T cd01250 16 WKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQP------DRRFCFEVISPT-------KTWHFQADSEE 82 (94)
T ss_pred ceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCcccc------CCceEEEEEcCC-------cEEEEECCCHH
Confidence 45689999999999986521 2468999999987776532 457888888544 78999999999
Q ss_pred hHHHHHHHHHHh
Q 010776 172 EKEAWCKALRLA 183 (501)
Q Consensus 172 EKEsWc~aLr~A 183 (501)
|.+.|..||+.|
T Consensus 83 ~~~~Wi~al~~~ 94 (94)
T cd01250 83 ERDDWISAIQES 94 (94)
T ss_pred HHHHHHHHHhcC
Confidence 999999999843
No 8
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.52 E-value=0.00063 Score=60.29 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=63.6
Q ss_pred ceeeeEeeCceEEEecCCCC---ccEEecCCcEEEEEeCCCccccccccccCeeEecCCc--------------ccccCc
Q 010776 98 VRKYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSS--------------VLYNGS 160 (501)
Q Consensus 98 ~~k~a~lk~~~L~L~~~Dg~---~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~--------------~iy~~s 160 (501)
-+||++|+++.|+....+.. ..+|+|.+|.|..+.. + .++|++.|..++. .++...
T Consensus 17 kkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~---~----~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~ 89 (125)
T cd01252 17 KRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVED---P----SKPFCFELFSPSDKQQIKACKTESDGRVVEGNH 89 (125)
T ss_pred EeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEccc---C----CCCeeEEEECCccccccccccccccccccccCc
Confidence 36899999999999986332 4689999999888754 2 2567788877764 223334
Q ss_pred eEEEEEecCchhHHHHHHHHHHhhccc
Q 010776 161 KLIYIFLETSWEKEAWCKALRLASCED 187 (501)
Q Consensus 161 Kv~~~y~eTs~EKEsWc~aLr~As~~~ 187 (501)
++++|.++|.-|...|..||+.+...+
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 677799999999999999999877654
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.32 E-value=0.0012 Score=56.70 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=57.4
Q ss_pred eeeeEeeCceEEEecCCCC---ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHHH
Q 010776 99 RKYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA 175 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~Dg~---~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEs 175 (501)
+|+++|+++.|+....++. ..+|+|.+|+|....... +.-.|.|.+.|.. .++++||.+++--|.+.
T Consensus 20 kRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~---~~~~~~~~F~I~t-------~~rt~~~~A~s~~e~~~ 89 (100)
T cd01233 20 RRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQA---AMVKGPNTFAVCT-------KHRGYLFQALSDKEMID 89 (100)
T ss_pred EEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchh---hhcCCCcEEEEEC-------CCCEEEEEcCCHHHHHH
Confidence 6899999999999887543 468999999988765522 2223456666653 46789999999999999
Q ss_pred HHHHHHH
Q 010776 176 WCKALRL 182 (501)
Q Consensus 176 Wc~aLr~ 182 (501)
|-.||+.
T Consensus 90 Wi~ai~~ 96 (100)
T cd01233 90 WLYALNP 96 (100)
T ss_pred HHHHhhh
Confidence 9999984
No 10
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.31 E-value=0.0017 Score=50.43 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=60.3
Q ss_pred cceeeeEeeCceEEEecCCC------CccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCc
Q 010776 97 PVRKYAKIKHRALILTSTDG------SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETS 170 (501)
Q Consensus 97 P~~k~a~lk~~~L~L~~~Dg------~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs 170 (501)
..++|+.|.++.|.+..... ....|+|.+|.|....... ...+.|.|..... +.++|+++|.
T Consensus 16 w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~~~------~~~~~~~~s~ 83 (96)
T cd00821 16 WKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS------GRKNCFEIRTPDG------RSYLLQAESE 83 (96)
T ss_pred ccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcC------CCCcEEEEecCCC------cEEEEEeCCH
Confidence 35789999999999987732 2368999999998877633 4667888885543 8999999999
Q ss_pred hhHHHHHHHHHHh
Q 010776 171 WEKEAWCKALRLA 183 (501)
Q Consensus 171 ~EKEsWc~aLr~A 183 (501)
-|.+.|..+|+.|
T Consensus 84 ~~~~~W~~~l~~~ 96 (96)
T cd00821 84 EEREEWIEALQSA 96 (96)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 11
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.26 E-value=0.0016 Score=57.39 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=55.6
Q ss_pred eeeeEeeCceEEEecCCCC----ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHH
Q 010776 99 RKYAKIKHRALILTSTDGS----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKE 174 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~Dg~----~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKE 174 (501)
|||-+|+++.|+-+...+. ..+|+|..|.. |....-..++=.+.|.+.|-.| ++++||+|++.-|+|
T Consensus 21 rRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~s--Vk~~~~~~~~~~~~~~Fei~tp-------~rt~~l~A~se~e~e 91 (101)
T cd01264 21 TRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRS--VKAVAKKRRDRSLPKAFEIFTA-------DKTYILKAKDEKNAE 91 (101)
T ss_pred eEEEEEeCCEEEEEeccCccCCCCceEEcccceE--EeeccccccccccCcEEEEEcC-------CceEEEEeCCHHHHH
Confidence 4899999999988866432 26999999994 3332222333344566666544 589999999999999
Q ss_pred HHHHHHHHh
Q 010776 175 AWCKALRLA 183 (501)
Q Consensus 175 sWc~aLr~A 183 (501)
+|.++|.-|
T Consensus 92 ~WI~~i~~a 100 (101)
T cd01264 92 EWLQCLNIA 100 (101)
T ss_pred HHHHHHHhh
Confidence 999999765
No 12
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.20 E-value=0.0016 Score=58.15 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=62.0
Q ss_pred eeeeEeeCceEEEecCCCC-----ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhH
Q 010776 99 RKYAKIKHRALILTSTDGS-----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~Dg~-----~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EK 173 (501)
+++++|+|.+|+....++. ...|.|.||+|..=-+ +.. ++|.|++..|. --|++++||=+||-=+=
T Consensus 22 rrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~--~~~----~kf~I~l~~ps---~~~~r~y~l~cdsEeqy 92 (106)
T cd01237 22 QYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVN--VAQ----QKFHIKLLIPT---AEGMNEVWLRCDNEKQY 92 (106)
T ss_pred eEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEccccc--ccc----cceEEEEecCC---ccCCeEEEEECCCHHHH
Confidence 5779999999999966432 3568999999864321 122 35999999886 35678999999999999
Q ss_pred HHHHHHHHHhhcc
Q 010776 174 EAWCKALRLASCE 186 (501)
Q Consensus 174 EsWc~aLr~As~~ 186 (501)
+.|-.|+|+||.-
T Consensus 93 a~Wmaa~rlas~g 105 (106)
T cd01237 93 AKWMAACRLASKG 105 (106)
T ss_pred HHHHHHHHHhhCC
Confidence 9999999999853
No 13
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.15 E-value=0.0036 Score=48.99 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=61.4
Q ss_pred cceeeeEeeCceEEEecCCCC------ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCc
Q 010776 97 PVRKYAKIKHRALILTSTDGS------QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETS 170 (501)
Q Consensus 97 P~~k~a~lk~~~L~L~~~Dg~------~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs 170 (501)
..++|+.|.++.|.+...... ...|+|.+|.|........ =...+.+.|.+++. +.++|+++|.
T Consensus 18 ~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~----~~~~~~f~l~~~~~------~~~~f~~~s~ 87 (102)
T smart00233 18 WKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDS----AKKPHCFEIKTADR------RSYLLQAESE 87 (102)
T ss_pred ceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCcc----CCCceEEEEEecCC------ceEEEEcCCH
Confidence 557899999999999987321 4679999998877766321 23467788886654 7999999999
Q ss_pred hhHHHHHHHHHHhh
Q 010776 171 WEKEAWCKALRLAS 184 (501)
Q Consensus 171 ~EKEsWc~aLr~As 184 (501)
-|++.|..+|+.|+
T Consensus 88 ~~~~~W~~~i~~~~ 101 (102)
T smart00233 88 EEREEWVDALRKAI 101 (102)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999775
No 14
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.07 E-value=0.0026 Score=54.18 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=56.2
Q ss_pred eeeeEeeCceEEEecCCCC-------ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCch
Q 010776 99 RKYAKIKHRALILTSTDGS-------QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~Dg~-------~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~ 171 (501)
++||+|+++.|++....+. +..|+|.||.|..+.+.. .++|-+.|..+ +.++++|-+++.-
T Consensus 25 ~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~------k~~~~F~l~~~------~~~~~~f~a~s~e 92 (104)
T cd01253 25 NVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYT------KKKHVFRLRLP------DGAEFLFQAPDEE 92 (104)
T ss_pred eEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcc------cCceEEEEEec------CCCEEEEECCCHH
Confidence 5799999999988864332 127899999998876522 13466777643 4588999999999
Q ss_pred hHHHHHHHHHHh
Q 010776 172 EKEAWCKALRLA 183 (501)
Q Consensus 172 EKEsWc~aLr~A 183 (501)
+-+.|..||+.|
T Consensus 93 ~~~~Wi~aL~~~ 104 (104)
T cd01253 93 EMSSWVRALKSA 104 (104)
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 15
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=96.77 E-value=0.011 Score=51.50 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=57.2
Q ss_pred ccceeeeEeeCceEEEecCC-----CCccEEecCCcEEEEEeCCCcccc--ccccccCeeEecCCcccccCceEEEEEec
Q 010776 96 YPVRKYAKIKHRALILTSTD-----GSQTSFPLKGCEIKAVSASSLSSR--KWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (501)
Q Consensus 96 ~P~~k~a~lk~~~L~L~~~D-----g~~~~I~L~gC~V~aVs~s~~~sr--KWaKkfPIkve~~~~~iy~~sKv~~~y~e 168 (501)
.--+|+.+|+++.|.-.+.. ..-..|+|.+|.+....... +.. .-.++|++.|.+++ +++||.|+
T Consensus 20 nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~-~~~~~~~~~~~~F~i~t~~-------r~~yl~A~ 91 (106)
T cd01238 20 NYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPE-KNPPIPERFKYPFQVVHDE-------GTLYVFAP 91 (106)
T ss_pred CceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCC-cCcccccccCccEEEEeCC-------CeEEEEcC
Confidence 34468899999999887652 22468999999755442221 111 12357899998765 47899999
Q ss_pred CchhHHHHHHHHHH
Q 010776 169 TSWEKEAWCKALRL 182 (501)
Q Consensus 169 Ts~EKEsWc~aLr~ 182 (501)
|--|.+.|..||+.
T Consensus 92 s~~er~~WI~ai~~ 105 (106)
T cd01238 92 TEELRKRWIKALKQ 105 (106)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999984
No 16
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.61 E-value=0.013 Score=50.49 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=56.7
Q ss_pred cceeeeEeeCceEEEecCC----CC----ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEec
Q 010776 97 PVRKYAKIKHRALILTSTD----GS----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (501)
Q Consensus 97 P~~k~a~lk~~~L~L~~~D----g~----~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~e 168 (501)
|-.||..|-+++|+...+- |. ...|+|.+|.|..... -...|.+.|..++ +.+++||+
T Consensus 18 ~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~-------~~~~~~F~I~~~~-------rsf~l~A~ 83 (101)
T cd01219 18 TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN-------LERPHSFLVSGKQ-------RCLELQAR 83 (101)
T ss_pred ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC-------CCcCceEEEecCC-------cEEEEEcC
Confidence 4458999988888888752 22 2569999999975432 1235778887666 79999999
Q ss_pred CchhHHHHHHHHHHhh
Q 010776 169 TSWEKEAWCKALRLAS 184 (501)
Q Consensus 169 Ts~EKEsWc~aLr~As 184 (501)
|--||+.|..||..|.
T Consensus 84 s~eEk~~W~~ai~~~i 99 (101)
T cd01219 84 TQKEKNDWVQAIFSII 99 (101)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999775
No 17
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.54 E-value=0.012 Score=51.50 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=52.3
Q ss_pred eeeeEeeCc------eEEEecCCC--------CccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEE
Q 010776 99 RKYAKIKHR------ALILTSTDG--------SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIY 164 (501)
Q Consensus 99 ~k~a~lk~~------~L~L~~~Dg--------~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~ 164 (501)
|||.+|++. .|.-.+... +..+|+|.+|....-.+ ..| ++|.|.|..|+ .+++
T Consensus 16 kRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~----d~k--~~~~f~i~t~d-------r~f~ 82 (101)
T cd01257 16 KRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRA----DAK--HRHLIALYTRD-------EYFA 82 (101)
T ss_pred eEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecc----ccc--cCeEEEEEeCC-------ceEE
Confidence 378888877 687776642 34699999999765332 211 45888887544 5899
Q ss_pred EEecCchhHHHHHHHHH
Q 010776 165 IFLETSWEKEAWCKALR 181 (501)
Q Consensus 165 ~y~eTs~EKEsWc~aLr 181 (501)
|.+||-.|.|.|+.+|-
T Consensus 83 l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 83 VAAENEAEQDSWYQALL 99 (101)
T ss_pred EEeCCHHHHHHHHHHHh
Confidence 99999999999999984
No 18
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.53 E-value=0.013 Score=51.07 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=58.8
Q ss_pred ccceeeeEeeCceEEEecC--CCCccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhH
Q 010776 96 YPVRKYAKIKHRALILTST--DGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (501)
Q Consensus 96 ~P~~k~a~lk~~~L~L~~~--Dg~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EK 173 (501)
.--+|+.+|.+++|.-.+. +....+|+|.....+..-.. ....+.|+|.|.+|++ ++||.++|-=|.
T Consensus 20 n~KkRwF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~----~~~~~~~~fqivt~~r-------~~yi~a~s~~E~ 88 (98)
T cd01244 20 HFKKRYFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSD----KSFVNVDIITIVCEDD-------TMQLQFEAPVEA 88 (98)
T ss_pred CCceeEEEECCCEEEEECCCCCceeeeEEccceEEEEEcCC----cccCCCceEEEEeCCC-------eEEEECCCHHHH
Confidence 5567889999999988766 33357899987665443222 2344579999998874 899999999999
Q ss_pred HHHHHHHHH
Q 010776 174 EAWCKALRL 182 (501)
Q Consensus 174 EsWc~aLr~ 182 (501)
+.|..||+-
T Consensus 89 ~~Wi~al~k 97 (98)
T cd01244 89 TDWLNALEK 97 (98)
T ss_pred HHHHHHHhc
Confidence 999999984
No 19
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=96.49 E-value=0.019 Score=49.79 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=53.7
Q ss_pred eeeeEeeCceEEEecC--CCC-ccEEecCCcE-EEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHH
Q 010776 99 RKYAKIKHRALILTST--DGS-QTSFPLKGCE-IKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKE 174 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~--Dg~-~~~I~L~gC~-V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKE 174 (501)
+|+.+|+++.|+-++. |.. ..+|+|..|. ...|..+..+...=...|.|.|..| .+++||.++|--|.+
T Consensus 18 kRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-------~Rty~l~a~s~~e~~ 90 (103)
T cd01251 18 KRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-------ERKFLFACETEQDRR 90 (103)
T ss_pred eEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-------CeEEEEECCCHHHHH
Confidence 5899999999999976 222 3579997553 1223222112101012258888876 468999999999999
Q ss_pred HHHHHHHHhh
Q 010776 175 AWCKALRLAS 184 (501)
Q Consensus 175 sWc~aLr~As 184 (501)
.|..||+-|-
T Consensus 91 ~Wi~ai~~v~ 100 (103)
T cd01251 91 EWIAAFQNVL 100 (103)
T ss_pred HHHHHHHHHh
Confidence 9999999664
No 20
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.39 E-value=0.028 Score=43.94 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=58.8
Q ss_pred cceeeeEeeCceEEEecCCCCc--c--EEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchh
Q 010776 97 PVRKYAKIKHRALILTSTDGSQ--T--SFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (501)
Q Consensus 97 P~~k~a~lk~~~L~L~~~Dg~~--~--~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~E 172 (501)
.-++|+.|.++.|.+.+.+... . .+++.+..|...... . .+.+.+.|..+.. +.+.++|+++|.-|
T Consensus 19 w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~---~---~~~~~F~i~~~~~----~~~~~~~~~~~~~~ 88 (99)
T cd00900 19 WKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDG---S---DDPNCFAIVTKDR----GRRVFVFQADSEEE 88 (99)
T ss_pred ceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCC---C---CCCceEEEECCCC----CcEEEEEEcCCHHH
Confidence 4568999999999999885432 2 689999884443321 1 4678888885543 68999999999999
Q ss_pred HHHHHHHHHHh
Q 010776 173 KEAWCKALRLA 183 (501)
Q Consensus 173 KEsWc~aLr~A 183 (501)
.+.|..+|+-|
T Consensus 89 ~~~W~~al~~~ 99 (99)
T cd00900 89 AQEWVEALQQA 99 (99)
T ss_pred HHHHHHHHhcC
Confidence 99999999854
No 21
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.29 E-value=0.022 Score=48.55 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=50.6
Q ss_pred eeeeEeeCceEEEecC--CC---CccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhH
Q 010776 99 RKYAKIKHRALILTST--DG---SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~--Dg---~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EK 173 (501)
+||-+|+++.|.-... |. ....|+|.+|.|.+... + ++-+.|.. .+.+++||-+++--|+
T Consensus 17 ~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~~-----~----~~~F~i~~------~~~r~~~L~A~s~~e~ 81 (91)
T cd01247 17 DRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHEF-----D----ENRFDISV------NENVVWYLRAENSQSR 81 (91)
T ss_pred eEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCCC-----C----CCEEEEEe------CCCeEEEEEeCCHHHH
Confidence 4788999999988766 32 24789999998775422 2 34444442 2358999999999999
Q ss_pred HHHHHHHH
Q 010776 174 EAWCKALR 181 (501)
Q Consensus 174 EsWc~aLr 181 (501)
+.|.+||.
T Consensus 82 ~~Wi~al~ 89 (91)
T cd01247 82 LLWMDSVV 89 (91)
T ss_pred HHHHHHHh
Confidence 99999996
No 22
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.15 E-value=0.016 Score=52.74 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=55.0
Q ss_pred eeeeEeeCceEEEecC--C----CCccEEecCCcEEEEEeCCCccccccccccCeeEecCCccc-------ccCce---E
Q 010776 99 RKYAKIKHRALILTST--D----GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVL-------YNGSK---L 162 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~--D----g~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~i-------y~~sK---v 162 (501)
|++|+|+|+.|+-... | .....|+|.+|.+..|...+.....-...|=|.+.+|+.+- -++.. +
T Consensus 21 RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~ 100 (122)
T cd01263 21 RRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERL 100 (122)
T ss_pred EEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEE
Confidence 4899999999999863 3 23468999999999886543222211222445556665221 11112 2
Q ss_pred -EEEEecCchhHHHHHHHHHHh
Q 010776 163 -IYIFLETSWEKEAWCKALRLA 183 (501)
Q Consensus 163 -~~~y~eTs~EKEsWc~aLr~A 183 (501)
+||=+||.-|.++|+.||..|
T Consensus 101 ~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 101 RVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEEEecCCHHHHHHHHHHHhcC
Confidence 234489999999999999743
No 23
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.09 E-value=0.028 Score=49.23 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=55.4
Q ss_pred eeeEeeC----ceEEEecCCCC---ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchh
Q 010776 100 KYAKIKH----RALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (501)
Q Consensus 100 k~a~lk~----~~L~L~~~Dg~---~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~E 172 (501)
++.+|.+ +.|+++..-+. ...|+|..|.|..|-. .++.|.|++.|..+++ ..++|+.+++ -|
T Consensus 19 rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~d-----s~~~r~~cFel~~~~~-----~~~y~~~a~~-~e 87 (98)
T cd01245 19 LYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHD-----SLFGRPNCFQIVERAL-----PTVYYSCRSS-EE 87 (98)
T ss_pred eEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccc-----cccCCCeEEEEecCCC-----CeEEEEeCCH-HH
Confidence 6677776 88988865332 2458999998887755 4567788888887765 2577888999 99
Q ss_pred HHHHHHHHHH
Q 010776 173 KEAWCKALRL 182 (501)
Q Consensus 173 KEsWc~aLr~ 182 (501)
++.|.++|+.
T Consensus 88 r~~Wi~~l~~ 97 (98)
T cd01245 88 RDKWIESLQA 97 (98)
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 24
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=96.05 E-value=0.053 Score=45.43 Aligned_cols=77 Identities=6% Similarity=0.113 Sum_probs=50.9
Q ss_pred eeeeEee--CceEEEecCCC--C-ccEEecCCcEEEEEeCCC--ccccccccccCeeEecCCcccccCceEEEEEecCch
Q 010776 99 RKYAKIK--HRALILTSTDG--S-QTSFPLKGCEIKAVSASS--LSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (501)
Q Consensus 99 ~k~a~lk--~~~L~L~~~Dg--~-~~~I~L~gC~V~aVs~s~--~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~ 171 (501)
+||.+|+ ++.|....... . ..+|+|.+|....+.... .|. .=.+.+-|.|. -..+++||++|+.-
T Consensus 17 kRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~-~~~~~~~f~i~-------t~~r~~~~~a~s~~ 88 (101)
T cd01235 17 PRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPK-HTSRKGFFDLK-------TSKRTYNFLAENIN 88 (101)
T ss_pred ceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCC-CCCCceEEEEE-------eCCceEEEECCCHH
Confidence 5799998 45888886532 2 368999998766543311 111 00122334443 34578999999999
Q ss_pred hHHHHHHHHHHh
Q 010776 172 EKEAWCKALRLA 183 (501)
Q Consensus 172 EKEsWc~aLr~A 183 (501)
|.+.|..|||.+
T Consensus 89 e~~~Wi~ai~~~ 100 (101)
T cd01235 89 EAQRWKEKIQQC 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999954
No 25
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=96.00 E-value=0.0074 Score=71.00 Aligned_cols=80 Identities=19% Similarity=0.463 Sum_probs=64.5
Q ss_pred cchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcCCCCCCCCCceEEeEeecCCCCCeeecccccCCCCCCcEEEEEE
Q 010776 346 EATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVD 425 (501)
Q Consensus 346 e~t~WlNaLIgRLFfd~~rt~~l~~~I~~KIqKKL~kIklPsFI~~I~VteIDlG~s~P~It~~rlp~ld~~G~~~vE~D 425 (501)
|++-|||.++-+++- .-.+.+.+.|.+-++.-|+. .+|+||+.+-|.++++|.-+|.|..+|--+-....+..+|++
T Consensus 221 ESveWLNtfL~KfW~--i~eP~iSqqV~dqvn~~la~-~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 221 ESVEWLNTFLQKFWP--IIEPSISQQVVDQVNQQLAE-AIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred hHHHHHHHHHHhhee--ccChHHHHHHHHHHHHHHHh-hcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 789999999998653 35899999999999999988 899999999999999999999999999444333333345554
Q ss_pred EEE
Q 010776 426 IEY 428 (501)
Q Consensus 426 v~Y 428 (501)
+.+
T Consensus 298 ~sf 300 (1227)
T COG5038 298 FSF 300 (1227)
T ss_pred ecc
Confidence 443
No 26
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.93 E-value=0.043 Score=46.87 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=50.7
Q ss_pred eeeeEeeC--ceEEEecCC---CCccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhH
Q 010776 99 RKYAKIKH--RALILTSTD---GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (501)
Q Consensus 99 ~k~a~lk~--~~L~L~~~D---g~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EK 173 (501)
+|+.+|++ +.|+-.... ....+|+|.+|.+..... . +++-+.|..+ .++++|.+++--|.
T Consensus 19 kRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~----~----~~~~F~i~t~-------~r~y~l~A~s~~e~ 83 (95)
T cd01265 19 SRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPR----E----EKGRFEIHSN-------NEVIALKASSDKQM 83 (95)
T ss_pred eEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCC----C----CCCEEEEEcC-------CcEEEEECCCHHHH
Confidence 57888985 467777652 224789999998765332 1 2455666644 47889999999999
Q ss_pred HHHHHHHHHh
Q 010776 174 EAWCKALRLA 183 (501)
Q Consensus 174 EsWc~aLr~A 183 (501)
+.|.+||..|
T Consensus 84 ~~Wi~al~~~ 93 (95)
T cd01265 84 NYWLQALQSK 93 (95)
T ss_pred HHHHHHHHhh
Confidence 9999999854
No 27
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.76 E-value=0.058 Score=47.72 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=56.8
Q ss_pred eeeEeeCceEEEecC--CCC----ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhH
Q 010776 100 KYAKIKHRALILTST--DGS----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (501)
Q Consensus 100 k~a~lk~~~L~L~~~--Dg~----~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EK 173 (501)
||.-|=+.+|+.... .+. ++.|+|+||.|.-+... +.-++.++|.++. |.+.+|++|.-||
T Consensus 21 R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~------~~~~n~f~I~~~~-------kSf~v~A~s~~eK 87 (104)
T cd01218 21 RQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDD------GIERNGWIIKTPT-------KSFAVYAATETEK 87 (104)
T ss_pred EEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCc------ccccceEEEecCC-------eEEEEEcCCHHHH
Confidence 567776777777543 222 45789999999877653 3456888888765 7999999999999
Q ss_pred HHHHHHHHHhhcc
Q 010776 174 EAWCKALRLASCE 186 (501)
Q Consensus 174 EsWc~aLr~As~~ 186 (501)
..|.++|..|...
T Consensus 88 ~eWl~~i~~ai~~ 100 (104)
T cd01218 88 REWMLHINKCVTD 100 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 28
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.63 E-value=0.052 Score=47.99 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=63.1
Q ss_pred ccceEEEeCCCCCC-cc-ccchHHHhhccceeeccceeeeEee-CceEEEecCC----CCccEEecCCcEEEEEeCCCcc
Q 010776 65 KQGYVWVLEPEKVP-KE-KFSKEQKKKKEFLEVYPVRKYAKIK-HRALILTSTD----GSQTSFPLKGCEIKAVSASSLS 137 (501)
Q Consensus 65 ~~g~~Wv~~~~~~~-k~-k~~ke~k~kk~~~ev~P~~k~a~lk-~~~L~L~~~D----g~~~~I~L~gC~V~aVs~s~~~ 137 (501)
++|.+-+.++++-- ++ ..-|-=| ||+-+|+ ++.|+-...+ -...+|+|..|..+. .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~Wk-----------rRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~-~~~--- 65 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQ-----------RRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVV-DAE--- 65 (104)
T ss_pred CcceeEEcCCCCcccccceeecccc-----------ceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEe-ecc---
Confidence 46778888876421 11 1122212 4789997 5677664222 235789999998644 332
Q ss_pred ccccccccCeeEecCCcccccCceEEEEEecCchhHHHHHHHHH
Q 010776 138 SRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALR 181 (501)
Q Consensus 138 srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEsWc~aLr 181 (501)
....+.|.|.|..|+ .++||.+||--|.+.|..+|-
T Consensus 66 -~~~~~~~~f~I~tp~-------R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 66 -ARTGQKFSICILTPD-------KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred -cccCCccEEEEECCC-------ceEEEEeCCHHHHHHHHHHHH
Confidence 233468899998776 689999999999999999985
No 29
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.50 E-value=0.082 Score=46.07 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=53.9
Q ss_pred eeeEeeCceEEEecC---CCC----ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchh
Q 010776 100 KYAKIKHRALILTST---DGS----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (501)
Q Consensus 100 k~a~lk~~~L~L~~~---Dg~----~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~E 172 (501)
||.-|=+.+|+.... ++. +..|+|.||.|.-+... +...|++.|.++. |.+.+||.|--|
T Consensus 19 R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~------~~~~~~F~I~~~~-------ks~~l~A~s~~E 85 (99)
T cd01220 19 RMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE------WGVPHCFTIFGGQ-------CAITVAASTRAE 85 (99)
T ss_pred EEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCC------cCCceeEEEEcCC-------eEEEEECCCHHH
Confidence 466665555555543 332 46799999999877652 4456888887554 789999999999
Q ss_pred HHHHHHHHHHhhc
Q 010776 173 KEAWCKALRLASC 185 (501)
Q Consensus 173 KEsWc~aLr~As~ 185 (501)
|..|.++|..|..
T Consensus 86 k~~Wi~~i~~aI~ 98 (99)
T cd01220 86 KEKWLADLSKAIA 98 (99)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997753
No 30
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.50 E-value=0.05 Score=47.04 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=42.2
Q ss_pred eeeeEee-CceEEEecCC---CCccEEecC-----CcEEEEEeCCCccccccccccCeeEe--cCCcccccCceEEEEEe
Q 010776 99 RKYAKIK-HRALILTSTD---GSQTSFPLK-----GCEIKAVSASSLSSRKWAKRFPIKVE--NKSSVLYNGSKLIYIFL 167 (501)
Q Consensus 99 ~k~a~lk-~~~L~L~~~D---g~~~~I~L~-----gC~V~aVs~s~~~srKWaKkfPIkve--~~~~~iy~~sKv~~~y~ 167 (501)
+||++|+ |+.|+....+ .....|+|. +|.+..+.. . +.|.+.|. +.+..+.+ +||+
T Consensus 19 ~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~----~----~~~~F~i~~~~~~~~~~r-----~f~a 85 (102)
T cd01241 19 PRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTER----P----RPNTFIIRCLQWTTVIER-----TFHV 85 (102)
T ss_pred eEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccC----C----CcceEEEEeccCCcccCE-----EEEe
Confidence 5789998 7777644332 112244444 454544432 2 33445554 21222222 5689
Q ss_pred cCchhHHHHHHHHHHh
Q 010776 168 ETSWEKEAWCKALRLA 183 (501)
Q Consensus 168 eTs~EKEsWc~aLr~A 183 (501)
||.-|.+.|..||+.+
T Consensus 86 ~s~ee~~eWi~ai~~v 101 (102)
T cd01241 86 ESPEEREEWIHAIQTV 101 (102)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999999865
No 31
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=95.49 E-value=0.063 Score=46.61 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=50.9
Q ss_pred ceeeeEeeCceE-------EEecCCC---CccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEe
Q 010776 98 VRKYAKIKHRAL-------ILTSTDG---SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFL 167 (501)
Q Consensus 98 ~~k~a~lk~~~L-------~L~~~Dg---~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~ 167 (501)
-+||.+|+++.| ....... ...+|+|..|+++-.+-.. ..+.-.+.|.+.+.++ .+++||.+
T Consensus 20 krRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~-~~~~~~~~~~f~i~t~-------~r~y~l~A 91 (108)
T cd01266 20 VRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLC-TAGNCIFGYGFDIETI-------VRDLYLVA 91 (108)
T ss_pred EEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccc-cccCcccceEEEEEeC-------CccEEEEE
Confidence 368999998864 5554322 2478999999875332110 1111123355666644 46799999
Q ss_pred cCchhHHHHHHHHHH
Q 010776 168 ETSWEKEAWCKALRL 182 (501)
Q Consensus 168 eTs~EKEsWc~aLr~ 182 (501)
||--|.+.|-.+|+.
T Consensus 92 ~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 92 KNEEEMTLWVNCICK 106 (108)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999973
No 32
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.06 E-value=0.16 Score=45.87 Aligned_cols=76 Identities=11% Similarity=0.172 Sum_probs=57.3
Q ss_pred eeeeEeeCceEEEecCCCC----------ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEec
Q 010776 99 RKYAKIKHRALILTSTDGS----------QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~Dg~----------~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~e 168 (501)
..||+|+|+.|++...... +..|.|.+|.+.+...-. -|+|=++|..+ ..+.++|.+.
T Consensus 28 ~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~------Kr~~VF~L~~~------~g~~~lfqA~ 95 (117)
T cd01230 28 MFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYS------KKPHVFRLRTA------DWREFLFQTS 95 (117)
T ss_pred EEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeecccc------CCCcEEEEEcC------CCCEEEEECC
Confidence 4699999999999865421 357999999866655521 24555666643 3578899999
Q ss_pred CchhHHHHHHHHHHhhcc
Q 010776 169 TSWEKEAWCKALRLASCE 186 (501)
Q Consensus 169 Ts~EKEsWc~aLr~As~~ 186 (501)
+--|-+.|..+|+.||..
T Consensus 96 ~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 96 SLKELQSWIERINVVAAA 113 (117)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999988754
No 33
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.36 E-value=1 Score=41.47 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=61.8
Q ss_pred ccchHHHhhccceeeccceeeeEeeCceEEEecCCC--C-------ccEEec--CCcEEEEEeCCCccccccccccC--e
Q 010776 81 KFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDG--S-------QTSFPL--KGCEIKAVSASSLSSRKWAKRFP--I 147 (501)
Q Consensus 81 k~~ke~k~kk~~~ev~P~~k~a~lk~~~L~L~~~Dg--~-------~~~I~L--~gC~V~aVs~s~~~srKWaKkfP--I 147 (501)
|+||-.+.||. =.|+||++.+..|||.+.+. . ..+||+ ..++|..|.++.+-.-. .|--| +
T Consensus 9 kvP~~~~~krG-----W~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~-~kDiP~If 82 (122)
T cd01243 9 KIPKPGGVKKG-----WQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHAS-KKDIPCIF 82 (122)
T ss_pred eccCCCCcccC-----ceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccC-cccCCeEE
Confidence 44555554443 45789999999999998522 1 146899 67999999998763110 11122 2
Q ss_pred eEecCCccc--ccCceEEEEEecCchhHHHHHHHHHH
Q 010776 148 KVENKSSVL--YNGSKLIYIFLETSWEKEAWCKALRL 182 (501)
Q Consensus 148 kve~~~~~i--y~~sKv~~~y~eTs~EKEsWc~aLr~ 182 (501)
+|+. +.| +--.-.+||-+++=-||.-|-.||..
T Consensus 83 ~I~~--~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~ 117 (122)
T cd01243 83 RVTT--SQISASSSKCSTLMLADTEEEKSKWVGALSE 117 (122)
T ss_pred EEEE--ecccCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence 3332 222 22346788999999999999999973
No 34
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=91.08 E-value=0.5 Score=41.70 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.3
Q ss_pred cccccCceEEEEEecCchhHHHHHHHHHHh
Q 010776 154 SVLYNGSKLIYIFLETSWEKEAWCKALRLA 183 (501)
Q Consensus 154 ~~iy~~sKv~~~y~eTs~EKEsWc~aLr~A 183 (501)
..|.-+.|+++||+||-=|.++|..||++|
T Consensus 83 ~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 83 FSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 344678899999999999999999999976
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=89.37 E-value=0.48 Score=43.41 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010776 6 VGLIIGAIGVVAVEAAAVLYFIYKLNQK 33 (501)
Q Consensus 6 ~~f~~G~l~l~~~e~~~~~~~~~rl~~k 33 (501)
.|+++|+++-++.=+++++|+|||++.|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555555557899999999977
No 36
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.26 E-value=1.1 Score=40.11 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=54.2
Q ss_pred ceeeeEeeC-ceEE---EecCC------CCc---cEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEE
Q 010776 98 VRKYAKIKH-RALI---LTSTD------GSQ---TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIY 164 (501)
Q Consensus 98 ~~k~a~lk~-~~L~---L~~~D------g~~---~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~ 164 (501)
+|.||.... +.+| +.++. |.+ ..|.|+.|+|....+.. |||+.-|+.+++. .+|.
T Consensus 18 vk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~d-------RRFCFei~~~~~~-----~~~~ 85 (104)
T cd01249 18 TKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESID-------KRFCFDVEVEEKP-----GVIT 85 (104)
T ss_pred EEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCcc-------ceeeEeeeecCCC-----CeEE
Confidence 478888743 4443 34443 233 46999999999888855 7999999988854 4689
Q ss_pred EEecCchhHHHHHHHH
Q 010776 165 IFLETSWEKEAWCKAL 180 (501)
Q Consensus 165 ~y~eTs~EKEsWc~aL 180 (501)
|=+|+=-+..+|..|+
T Consensus 86 lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 86 MQALSEKDRRLWIEAM 101 (104)
T ss_pred EEecCHHHHHHHHHhh
Confidence 9999999999999986
No 37
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.53 E-value=2 Score=38.77 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=44.2
Q ss_pred cEEecCCcEEEEEeCCCcc--ccccccccCeeEecCCcccccCceEEEEEecCchhHHHHHHHHH
Q 010776 119 TSFPLKGCEIKAVSASSLS--SRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALR 181 (501)
Q Consensus 119 ~~I~L~gC~V~aVs~s~~~--srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEsWc~aLr 181 (501)
..|+|+.|.|.=+.-+... +.+ =+|..+|.+.+ +.+.+.||+.|-=||-.|-.||.
T Consensus 47 gri~l~~~~I~d~~Dg~~~~~~~~--~knafkl~~~~-----~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 47 GRIDLDRCEVVNIRDGKMFSSGHT--IKNSLKIYSES-----TDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred EEEEcccEEEEECCCCccccCCce--eEEEEEEEEcC-----CCeEEEEEECCHHHHHHHHHHHH
Confidence 5799999999999876533 222 35677777653 46889999999999999999997
No 38
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.51 E-value=3.9 Score=36.84 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=54.5
Q ss_pred eeeeEeeCceEEEecCCCCc--------------cEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEE
Q 010776 99 RKYAKIKHRALILTSTDGSQ--------------TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIY 164 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~Dg~~--------------~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~ 164 (501)
.||.-|=|++|++-.+++.. +.|+|+++.|.-+..+. .. ++-++|.+.+ .+.+.
T Consensus 22 ~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~----~~--knaF~I~~~~------~~s~~ 89 (112)
T cd01261 22 ERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS----EY--KNAFEIILKD------GNSVI 89 (112)
T ss_pred eEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc----cc--CceEEEEcCC------CCEEE
Confidence 57788888888886666541 34899998888655533 11 6778887542 35899
Q ss_pred EEecCchhHHHHHHHHHHh
Q 010776 165 IFLETSWEKEAWCKALRLA 183 (501)
Q Consensus 165 ~y~eTs~EKEsWc~aLr~A 183 (501)
||+.|.=||..|-.+|-.|
T Consensus 90 l~Akt~eeK~~Wm~~l~~~ 108 (112)
T cd01261 90 FSAKNAEEKNNWMAALISV 108 (112)
T ss_pred EEECCHHHHHHHHHHHHHH
Confidence 9999999999999999754
No 39
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.52 E-value=3.7 Score=37.09 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=61.5
Q ss_pred eeeEeeCceEEEecCCCCc---cEEecCCcEEEEEeCCCccccccccccCeeEecC-CcccccCceEEEEEecCchhHHH
Q 010776 100 KYAKIKHRALILTSTDGSQ---TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENK-SSVLYNGSKLIYIFLETSWEKEA 175 (501)
Q Consensus 100 k~a~lk~~~L~L~~~Dg~~---~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~-~~~iy~~sKv~~~y~eTs~EKEs 175 (501)
+.-+|.+..|.-+.-|.-. .-|+|+|+.|.-|-.+- ++ |+|...|.+| .+-+|++.|++=+=++|.=|-++
T Consensus 22 ~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf-~s----k~~~FeLfnpd~rnvykd~k~lel~~~~~e~vds 96 (110)
T cd01256 22 YWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGF-MS----RNHKFALFYPDGRNVYKDYKQLELGCETLEEVDS 96 (110)
T ss_pred eEEEEecceeeeecccccccccceeeccccEEEeecccc-cC----CCcEEEEEcCcccccccchheeeecCCCHHHHHH
Confidence 5567888888888554332 36899999999998754 44 4588999988 78999999999999999999999
Q ss_pred HHHHH
Q 010776 176 WCKAL 180 (501)
Q Consensus 176 Wc~aL 180 (501)
|--.|
T Consensus 97 wkasf 101 (110)
T cd01256 97 WKASF 101 (110)
T ss_pred HHHHH
Confidence 97543
No 40
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.67 E-value=6.1 Score=35.36 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=51.4
Q ss_pred ceeeeEeeCceEEEecC-CCC--ccEEecC-CcEEEEEeCC------CccccccccccCeeEecCCcccccCceEEEEEe
Q 010776 98 VRKYAKIKHRALILTST-DGS--QTSFPLK-GCEIKAVSAS------SLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFL 167 (501)
Q Consensus 98 ~~k~a~lk~~~L~L~~~-Dg~--~~~I~L~-gC~V~aVs~s------~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~ 167 (501)
-+|+.+|++..|...+. ++. -.+|.|+ +++|..-... ..+. +=.++|.|+|+.++ +++.|=+
T Consensus 34 ~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~-~~~~~~~~~i~t~~-------R~~~l~a 105 (121)
T cd01254 34 QKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKD-ITGLRHGLKITNSN-------RSLKLKC 105 (121)
T ss_pred cceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccc-cCCCceEEEEEcCC-------cEEEEEe
Confidence 35788999999977665 332 2466664 4444422211 0011 12457888888665 5678999
Q ss_pred cCchhHHHHHHHHHHh
Q 010776 168 ETSWEKEAWCKALRLA 183 (501)
Q Consensus 168 eTs~EKEsWc~aLr~A 183 (501)
+|..+.+.|..+|..|
T Consensus 106 ~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 106 KSSRKLKQWMASIEDA 121 (121)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999876
No 41
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=79.77 E-value=0.63 Score=38.45 Aligned_cols=49 Identities=24% Similarity=0.475 Sum_probs=2.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCcccCCccchhHHhhhc
Q 010776 4 FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQSLEFAYKK 65 (501)
Q Consensus 4 ~~~~f~~G~l~l~~~e~~~~~~~~~rl~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (501)
.+.|.+.|+++-+++=++.+++++.|+++| ++.+-++|-+.+-..+|+|
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkk-------------dEGSY~l~e~K~s~~~Y~k 58 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKK-------------DEGSYDLDEPKPSNYAYQK 58 (64)
T ss_dssp ---------------------------S-------------------SS--S----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCCccCCCCCcccccccc
Confidence 356667777766666677788888999877 5555555532222445554
No 42
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=71.86 E-value=31 Score=30.62 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=48.2
Q ss_pred eeEeeCceEEEecCCC------------Cc-----cEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEE
Q 010776 101 YAKIKHRALILTSTDG------------SQ-----TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLI 163 (501)
Q Consensus 101 ~a~lk~~~L~L~~~Dg------------~~-----~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~ 163 (501)
||+|+++.|+|..... .. ..|+|.+|....-+. =.| |+|=+.|..+ .-..+
T Consensus 30 y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~d----Y~K--r~~VFrL~~~------dg~e~ 97 (119)
T PF15410_consen 30 YAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASD----YTK--RKNVFRLRTA------DGSEY 97 (119)
T ss_dssp EEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETT----BTT--CSSEEEEE-T------TS-EE
T ss_pred eEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcc----ccc--CCeEEEEEeC------CCCEE
Confidence 8999999999996611 11 239999999888332 122 6677777743 34577
Q ss_pred EEEecCchhHHHHHHHHHHhh
Q 010776 164 YIFLETSWEKEAWCKALRLAS 184 (501)
Q Consensus 164 ~~y~eTs~EKEsWc~aLr~As 184 (501)
+|=+.+--|-..|..++-.||
T Consensus 98 Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 98 LFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp EEE-SSHHHHHHHHHHHHHH-
T ss_pred EEECCCHHHHHHHHHHHhhhc
Confidence 888999999999999998776
No 43
>PF15409 PH_8: Pleckstrin homology domain
Probab=70.62 E-value=22 Score=31.08 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=49.4
Q ss_pred ceeeeEe--eCceEEEecC--CC-CccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchh
Q 010776 98 VRKYAKI--KHRALILTST--DG-SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (501)
Q Consensus 98 ~~k~a~l--k~~~L~L~~~--Dg-~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~E 172 (501)
.+||-+| +++.|--... ++ -+..|++..|.|.+ .. |.--|-| -.|..+.+|=+.+--+
T Consensus 15 ~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~-~~---------~~~~I~i-------dsg~~i~hLKa~s~~~ 77 (89)
T PF15409_consen 15 HKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISA-NK---------KSRRIDI-------DSGDEIWHLKAKSQED 77 (89)
T ss_pred eeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEe-cC---------CCCEEEE-------EcCCeEEEEEcCCHHH
Confidence 3678888 8999866653 33 25789988885533 22 1223444 3467889999999999
Q ss_pred HHHHHHHHHHh
Q 010776 173 KEAWCKALRLA 183 (501)
Q Consensus 173 KEsWc~aLr~A 183 (501)
-+.|..||+.|
T Consensus 78 f~~Wv~aL~~a 88 (89)
T PF15409_consen 78 FQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHhc
Confidence 99999999976
No 44
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.81 E-value=20 Score=32.88 Aligned_cols=98 Identities=18% Similarity=0.355 Sum_probs=65.2
Q ss_pred hccceEEEeCCCCCCccccchHHHhhccceeeccceeeeEeeCceEEEecCCCCc---cEEecCCcE------EEEEeCC
Q 010776 64 KKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQ---TSFPLKGCE------IKAVSAS 134 (501)
Q Consensus 64 ~~~g~~Wv~~~~~~~k~k~~ke~k~kk~~~ev~P~~k~a~lk~~~L~L~~~Dg~~---~~I~L~gC~------V~aVs~s 134 (501)
.++|.++|.+.++- .|.-||+-|=|+.||+-...|.. .+..|+.|- |..-...
T Consensus 5 ~~DGelk~k~~~~~------------------k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~ 66 (116)
T cd01223 5 LLDGEVRIKASEDQ------------------KTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSR 66 (116)
T ss_pred ccCCceEEeEeccC------------------CCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCcc
Confidence 45678888775431 13368999999999998875432 235555543 3332222
Q ss_pred Cc--cccccccccCeeEecCCcccccCceEEEEEecCchhHHHHHHHHHHhhcc
Q 010776 135 SL--SSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCE 186 (501)
Q Consensus 135 ~~--~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEsWc~aLr~As~~ 186 (501)
.. ++.+| +|...+.|. .|...+-||+-|-=||..|-+||-+|-++
T Consensus 67 d~~~~~~~~--~~~f~L~~~-----~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 67 DTEGRDTRW--KYGFYLAHK-----QGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred CcccCCcce--EEEEEEEec-----CCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 21 23466 466677765 34667899999999999999999988665
No 45
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=68.20 E-value=6.5 Score=36.23 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccc
Q 010776 4 FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKT-KKVA 38 (501)
Q Consensus 4 ~~~~f~~G~l~l~~~e~~~~~~~~~rl~~k~-~~~~ 38 (501)
|.++.++|-|..+.+-++|+.+||+|-.|++ ++|+
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~arrR~ 119 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRCCRRAARRRQ 119 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666666666677899999999988887 5544
No 46
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=64.91 E-value=5.9 Score=36.52 Aligned_cols=80 Identities=11% Similarity=0.229 Sum_probs=46.7
Q ss_pred eeeEeeCceEEEecCC--C-C------ccEEecCCcEEEEEeCC-------------Ccc----c---------cccccc
Q 010776 100 KYAKIKHRALILTSTD--G-S------QTSFPLKGCEIKAVSAS-------------SLS----S---------RKWAKR 144 (501)
Q Consensus 100 k~a~lk~~~L~L~~~D--g-~------~~~I~L~gC~V~aVs~s-------------~~~----s---------rKWaKk 144 (501)
=||-|=||.|+|+.+- + . ...|+|+==.|...... ..+ + ..=...
T Consensus 20 i~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~~~~~~~~~~~~~~~~~~~~~~ 99 (135)
T PF15405_consen 20 IHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLISSSSSNSNSPSNPNSSDSKSL 99 (135)
T ss_dssp EEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S-------SHHHH--------TSSE
T ss_pred eEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCccCCccCCCCccceeeeccCCCc
Confidence 3788899999998771 1 1 24577765444431111 000 0 112568
Q ss_pred cCeeEecCCcccccCceEEEEEecCchhHHHHHHHHHHh
Q 010776 145 FPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLA 183 (501)
Q Consensus 145 fPIkve~~~~~iy~~sKv~~~y~eTs~EKEsWc~aLr~A 183 (501)
|||++.|-++.=| .+=|||+|--+...||+++..+
T Consensus 100 yp~~~~hlG~~~~----~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGY----SYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-E----EEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCce----EEEEEeCCHHHHHHHHHHHHhc
Confidence 9999997665444 3789999999999999999864
No 47
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=56.99 E-value=51 Score=30.28 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=67.1
Q ss_pred ccceEEEeCCCCCCccccchHHHhhccceeeccceeeeEeeCceEEEecCCCCc------cEEecCCcEEEEEeCCCccc
Q 010776 65 KQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQ------TSFPLKGCEIKAVSASSLSS 138 (501)
Q Consensus 65 ~~g~~Wv~~~~~~~k~k~~ke~k~kk~~~ev~P~~k~a~lk~~~L~L~~~Dg~~------~~I~L~gC~V~aVs~s~~~s 138 (501)
.||++|+=|+++-+ || |+|+.|...-|+-+.-..+- --.+|+++.|...-+
T Consensus 2 ~~g~LylK~~gkKs-WK-----------------k~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~----- 58 (114)
T cd01259 2 MEGPLYLKADGKKS-WK-----------------KYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLG----- 58 (114)
T ss_pred ccceEEEccCCCcc-ce-----------------EEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEec-----
Confidence 57899988776532 32 47999999999987444331 236899999998876
Q ss_pred cccccc------cCeeEecCCcccccCceEEEEEecCchhHHHHHHHHHHh
Q 010776 139 RKWAKR------FPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLA 183 (501)
Q Consensus 139 rKWaKk------fPIkve~~~~~iy~~sKv~~~y~eTs~EKEsWc~aLr~A 183 (501)
|.|+ |.+.|-|+.-.--...-+-+|=+|.-+--..|.-|||+|
T Consensus 59 --~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 59 --WRKKYKSPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred --hhhccCCCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 4444 567776654222223456788899999999999999987
No 48
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=56.13 E-value=14 Score=33.59 Aligned_cols=30 Identities=17% Similarity=0.511 Sum_probs=25.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 010776 2 ISFFVGLIIGAIGVVAVEAAAVLYFI-YKLN 31 (501)
Q Consensus 2 ~~~~~~f~~G~l~l~~~e~~~~~~~~-~rl~ 31 (501)
++.+.|.|.|.++.+++|.+=++=.+ ||++
T Consensus 54 ~GL~~GiFvG~la~ALaEvlnv~PIlarRi~ 84 (110)
T PF13782_consen 54 FGLFAGIFVGCLAAALAEVLNVFPILARRIG 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46779999999999999999998777 7765
No 49
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.47 E-value=89 Score=28.68 Aligned_cols=76 Identities=13% Similarity=0.345 Sum_probs=50.2
Q ss_pred ceeeeEeeCceEEEecC--CCC----ccEEecCC-cEEEEEeCCCcc--ccccccccC--eeEecCCcccccCceEEEEE
Q 010776 98 VRKYAKIKHRALILTST--DGS----QTSFPLKG-CEIKAVSASSLS--SRKWAKRFP--IKVENKSSVLYNGSKLIYIF 166 (501)
Q Consensus 98 ~~k~a~lk~~~L~L~~~--Dg~----~~~I~L~g-C~V~aVs~s~~~--srKWaKkfP--Ikve~~~~~iy~~sKv~~~y 166 (501)
.|+||++.+..|+|.+. |.. ..+++++. ++|..|.++.+- .+ |--| +.|+.. ..+..+|+-
T Consensus 21 ~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~---kDiP~IF~I~~~-----~~~~~lllL 92 (112)
T cd01242 21 KKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADA---KEIPKIFQILYA-----NEARDLLLL 92 (112)
T ss_pred eEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCc---ccCCeEEEEEeC-----CccceEEEE
Confidence 47899999999999985 322 24566653 556666665541 11 1111 122211 225889999
Q ss_pred ecCchhHHHHHHHHH
Q 010776 167 LETSWEKEAWCKALR 181 (501)
Q Consensus 167 ~eTs~EKEsWc~aLr 181 (501)
|++=-||.-|-.||+
T Consensus 93 A~s~~ek~kWV~~L~ 107 (112)
T cd01242 93 APQTDEQNKWVSRLV 107 (112)
T ss_pred eCCchHHHHHHHHHH
Confidence 999999999999998
No 50
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=50.52 E-value=17 Score=42.17 Aligned_cols=92 Identities=18% Similarity=0.376 Sum_probs=70.9
Q ss_pred cchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcCC----CCCCCCCceEEeEeecCCCCCeeecccccCCC------
Q 010776 346 EATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNM----RTPSYIGEIICTDIDTGNLPPYVHGMRVLPTD------ 415 (501)
Q Consensus 346 e~t~WlNaLIgRLFfd~~rt~~l~~~I~~KIqKKL~kI----klPsFI~~I~VteIDlG~s~P~It~~rlp~ld------ 415 (501)
.++.-+|.++.-+|..+..++.+.-++..|++--++++ -.=-.|+.+.+.|+.+|+.+|-++..++-.++
T Consensus 99 S~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l 178 (1051)
T KOG3532|consen 99 SSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFL 178 (1051)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhccccccccceEEeecccHHHHH
Confidence 35667899999999999999999999999998666554 23346899999999999999999876654421
Q ss_pred -----------CCC-------cEEEEEEEEEcCceEEEEE
Q 010776 416 -----------MNE-------VWAFEVDIEYAGGVVLDVE 437 (501)
Q Consensus 416 -----------~~G-------~~~vE~Dv~Y~Ggl~LtIe 437 (501)
..| ..-+-.|++|.|+++=.|.
T Consensus 179 ~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid 218 (1051)
T KOG3532|consen 179 KYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSID 218 (1051)
T ss_pred HhhhhhhhhcccCCcceecccccccccccccCCCcceecC
Confidence 111 1235589999999987763
No 51
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=49.71 E-value=33 Score=28.82 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q 010776 6 VGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSP 44 (501)
Q Consensus 6 ~~f~~G~l~l~~~e~~~~~~~~~rl~~k~~~~~~~~~~~ 44 (501)
++|..+++.++++=.++++|+|.++. +.+..+.|++
T Consensus 27 Gag~Aav~~~~~~~~l~~~~~iG~~L---Pe~s~~aP~P 62 (67)
T PF11511_consen 27 GAGYAAVFFLGLWFLLVALYFIGLLL---PERSRQAPDP 62 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS---TTTCSS-SSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhC---chhcccCCCC
Confidence 56778888888888889999999998 5555555543
No 52
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=49.45 E-value=9.9 Score=38.27 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 010776 4 FFVGLIIGAIGVVAVEAAAVLY 25 (501)
Q Consensus 4 ~~~~f~~G~l~l~~~e~~~~~~ 25 (501)
++.|++.|++++++|=++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 5678888888888876555544
No 53
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=49.09 E-value=28 Score=28.09 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=21.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010776 1 MISFFVGLIIGAIGVVAVEAAAVLYFIYK 29 (501)
Q Consensus 1 ~~~~~~~f~~G~l~l~~~e~~~~~~~~~r 29 (501)
|-.|..||+.|+++.+++=+.+++-+=+.
T Consensus 1 mkkF~~G~l~G~~~t~aa~a~av~~~kK~ 29 (54)
T PF11240_consen 1 MKKFGKGFLTGVAATLAAIAGAVFTFKKT 29 (54)
T ss_pred CcchhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 56799999999999888866665544333
No 54
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.88 E-value=32 Score=35.26 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=12.2
Q ss_pred cchhHHHHHHHHHHHH
Q 010776 3 SFFVGLIIGAIGVVAV 18 (501)
Q Consensus 3 ~~~~~f~~G~l~l~~~ 18 (501)
.||.+|++|+++|+++
T Consensus 185 vFL~~lligl~llllv 200 (261)
T KOG1631|consen 185 VFLYILLIGLSLLLLV 200 (261)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4788888888877654
No 55
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=46.84 E-value=21 Score=31.90 Aligned_cols=24 Identities=17% Similarity=0.535 Sum_probs=22.1
Q ss_pred cCceEEEEEecCchhHHHHHHHHH
Q 010776 158 NGSKLIYIFLETSWEKEAWCKALR 181 (501)
Q Consensus 158 ~~sKv~~~y~eTs~EKEsWc~aLr 181 (501)
...|.+.+|+.|..||+.|-.+++
T Consensus 68 ~~~KSf~~~asS~~Er~eW~~hI~ 91 (96)
T cd01228 68 KNGKSYTFLLSSDYERSEWRESIQ 91 (96)
T ss_pred cCCceEEEEecCHHHHHHHHHHHH
Confidence 368999999999999999999986
No 56
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=45.19 E-value=20 Score=26.20 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHH
Q 010776 174 EAWCKALRLASCEDKKRLEWFTKLNEDFHIY 204 (501)
Q Consensus 174 EsWc~aLr~As~~~k~~~~w~~kl~~~F~~y 204 (501)
|+||+.++ +|.+-+|.+.=-.+|..|
T Consensus 4 e~WC~~m~-----~kpK~dWtanea~~fAKh 29 (32)
T PF11216_consen 4 EAWCEDMK-----EKPKGDWTANEAADFAKH 29 (32)
T ss_pred HHHHHHHh-----hCCcccCcHhHHHHHHHh
Confidence 89999998 466678988766666443
No 57
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=45.10 E-value=20 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.112 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010776 3 SFFVGLIIGAIGVVAVEAAAVLYFIYKLN 31 (501)
Q Consensus 3 ~~~~~f~~G~l~l~~~e~~~~~~~~~rl~ 31 (501)
+|+.||+.|-..++++=++++++.+||+.
T Consensus 35 ~~~~Gi~~~~~l~g~i~g~~~~~~~r~lK 63 (101)
T PRK13707 35 CIGWGITTSKYLFGIIAAVLVWFGIRKLK 63 (101)
T ss_pred HHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 45677777766777777888888899976
No 58
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=41.73 E-value=1.6e+02 Score=28.76 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCce
Q 010776 366 VGVKSSIQARIQRALSNMRTPSYIGEI 392 (501)
Q Consensus 366 ~~l~~~I~~KIqKKL~kIklPsFI~~I 392 (501)
++.++.....||+.|.+++.|.+-+..
T Consensus 8 ~y~~~~~~~~l~~~l~~i~iPdi~~~~ 34 (225)
T smart00328 8 DYAAQEGALALQKELPKITIPDIRGDF 34 (225)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCce
Confidence 456777788899999999999887653
No 59
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=40.83 E-value=1.5e+02 Score=26.50 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=41.1
Q ss_pred ccEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHHHHHHHHHHhh
Q 010776 118 QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLAS 184 (501)
Q Consensus 118 ~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEsWc~aLr~As 184 (501)
+..++|++=.|.-|..+. .=|+.+++..+. +.+.+++||.-+|-.|...|..|-
T Consensus 45 ~~~~~L~~i~V~ni~D~~------~~kNafki~t~~-------~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 45 ESTYSLNSVAVVNVKDRE------NAKKVLKLLIFP-------ESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEEEehHHeEEEecCCCc------CcCceEEEEeCC-------ccEEEEeCCHHHHHHHHHHHHHHh
Confidence 356788888877776644 137788887553 456689999999999999998764
No 60
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=39.06 E-value=1.6e+02 Score=26.02 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=12.4
Q ss_pred EEEEecCchhHHHHHHHHHHhh
Q 010776 163 IYIFLETSWEKEAWCKALRLAS 184 (501)
Q Consensus 163 ~~~y~eTs~EKEsWc~aLr~As 184 (501)
.+|+-=.|.+.+ ||+++..+.
T Consensus 68 y~leD~~~~a~~-W~~~I~~~~ 88 (89)
T cd01262 68 YSFEDPKGRASQ-WKKAIEDLQ 88 (89)
T ss_pred EEEECCCCCHHH-HHHHHHHHh
Confidence 334333455554 999997654
No 61
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=38.91 E-value=2e+02 Score=25.36 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=42.3
Q ss_pred eeeEeeCceEEEecCCCCc----cEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHHH
Q 010776 100 KYAKIKHRALILTSTDGSQ----TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA 175 (501)
Q Consensus 100 k~a~lk~~~L~L~~~Dg~~----~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEs 175 (501)
||.-|=+++|+..++-|.. +.|.+.+ +-++-....- -+-..|.+.+ .....+-|+|.|-=+|..
T Consensus 19 R~vFLFe~~ll~~K~~~~~y~~K~~i~~~~--l~i~e~~~~d------~~~F~v~~~~----~p~~~~~l~A~s~e~K~~ 86 (97)
T cd01222 19 RLLFLFQTMLLIAKPRGDKYQFKAYIPCKN--LMLVEHLPGE------PLCFRVIPFD----DPKGALQLTARNREEKRI 86 (97)
T ss_pred eEEEEecccEEEEEecCCeeEEEEEEEecc--eEEecCCCCC------CcEEEEEecC----CCceEEEEEecCHHHHHH
Confidence 6677777777777765542 2344322 2222221100 1334444443 223477799999999999
Q ss_pred HHHHHHHh
Q 010776 176 WCKALRLA 183 (501)
Q Consensus 176 Wc~aLr~A 183 (501)
|.++|+.|
T Consensus 87 W~~~i~~~ 94 (97)
T cd01222 87 WTQQLKRA 94 (97)
T ss_pred HHHHHHHH
Confidence 99999976
No 62
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.76 E-value=36 Score=26.88 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=4.5
Q ss_pred chhHHHHHHH
Q 010776 4 FFVGLIIGAI 13 (501)
Q Consensus 4 ~~~~f~~G~l 13 (501)
|+.|+++|.+
T Consensus 28 f~~G~llg~l 37 (68)
T PF06305_consen 28 FLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 63
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=37.63 E-value=37 Score=31.45 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 010776 10 IGAIGVVAVEAAAVLYFIYKLN 31 (501)
Q Consensus 10 ~G~l~l~~~e~~~~~~~~~rl~ 31 (501)
.|.|+++++=++++.|++||+.
T Consensus 22 ~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 22 SGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4556677777888999999997
No 64
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=36.44 E-value=61 Score=31.09 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhhccccccCC
Q 010776 18 VEAAAVLYFIYKLNQKTKKVASFS 41 (501)
Q Consensus 18 ~e~~~~~~~~~rl~~k~~~~~~~~ 41 (501)
+=.++.||++||..||.+++.+..
T Consensus 112 lg~~l~fl~~r~ysRkl~~~~~~Q 135 (150)
T COG3086 112 LGLALGFLLARRYSRKLAKRTEWQ 135 (150)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCC
Confidence 334556778899999875544333
No 65
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=34.12 E-value=2.8e+02 Score=24.79 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=37.6
Q ss_pred cceeeeEeeCc-eEEEecCCCCc--cEEecCCc-EEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchh
Q 010776 97 PVRKYAKIKHR-ALILTSTDGSQ--TSFPLKGC-EIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (501)
Q Consensus 97 P~~k~a~lk~~-~L~L~~~Dg~~--~~I~L~gC-~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~E 172 (501)
.-+|.=.|.|+ .||.-++.+.. +.|++..| .|.+.+. +. ..|+.| .++.+|.-..+-
T Consensus 27 ~kkR~liLTd~PrL~Yvdp~~~~~KGeI~~~~~l~v~~k~~---------~~--F~I~tp-------~RtY~l~d~~~~- 87 (104)
T PF14593_consen 27 AKKRQLILTDGPRLFYVDPKKMVLKGEIPWSKELSVEVKSF---------KT--FFIHTP-------KRTYYLEDPEGN- 87 (104)
T ss_dssp EEEEEEEEETTTEEEEEETTTTEEEEEE--STT-EEEECSS---------SE--EEEEET-------TEEEEEE-TTS--
T ss_pred EEEEEEEEccCCEEEEEECCCCeECcEEecCCceEEEEccC---------CE--EEEECC-------CcEEEEECCCCC-
Confidence 44455566666 77777776654 57888865 6666554 12 234434 344444444444
Q ss_pred HHHHHHHHHHh
Q 010776 173 KEAWCKALRLA 183 (501)
Q Consensus 173 KEsWc~aLr~A 183 (501)
-..||+++..+
T Consensus 88 A~~W~~~I~~~ 98 (104)
T PF14593_consen 88 AQQWVEAIEEV 98 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45699999754
No 66
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.84 E-value=1.6e+02 Score=31.35 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=56.6
Q ss_pred eeeeEeeCceEEEecC--CC-CccEEecCCcEEEEEeCCCccccccccccCeeEecCCc--ccccCce------------
Q 010776 99 RKYAKIKHRALILTST--DG-SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSS--VLYNGSK------------ 161 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~--Dg-~~~~I~L~gC~V~aVs~s~~~srKWaKkfPIkve~~~~--~iy~~sK------------ 161 (501)
||.-.|-++-|+-++. |- +..-|+|.+-+|.-|-. |+ |-|++-+..|+. ..-+.||
T Consensus 279 rRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~Ved---P~----kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H 351 (395)
T KOG0930|consen 279 RRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED---PK----KPNCFELYIPSNKGQVIKACKTEADGRVVEGNH 351 (395)
T ss_pred heeEEeecceeeeeeeccCCCCCcceeccccceeeccC---CC----CCCeEEEecCCCCcCeeeeecccCCceeEeccc
Confidence 4567788899988876 33 24579999999999988 43 345555555543 2222332
Q ss_pred -EEEEEecCchhHHHHHHHHHHhhccc
Q 010776 162 -LIYIFLETSWEKEAWCKALRLASCED 187 (501)
Q Consensus 162 -v~~~y~eTs~EKEsWc~aLr~As~~~ 187 (501)
+.-|-+-|.=||++|.++++++-+.+
T Consensus 352 ~vYrIsA~~~Ee~~~Wi~sI~a~is~~ 378 (395)
T KOG0930|consen 352 SVYRISAPTPEEKDEWIKSIKAAISRD 378 (395)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence 23356778889999999999887754
No 67
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=33.56 E-value=99 Score=27.98 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=45.1
Q ss_pred eeeeEeeCceEEEecC--CCC------ccEEecC--CcEEEEEeCCCccccccccccCeeEecCCcccccCceEEEEEec
Q 010776 99 RKYAKIKHRALILTST--DGS------QTSFPLK--GCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (501)
Q Consensus 99 ~k~a~lk~~~L~L~~~--Dg~------~~~I~L~--gC~V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~e 168 (501)
-+|+.|+++.|+++++ --. ..+.+|. -|- .|..+.....-=...+.+.+...+. =...||=.|
T Consensus 21 P~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atr--vv~~~~~~~~~~~~~~~F~irtg~~-----vesh~fsVE 93 (108)
T cd01258 21 PRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATR--LVKNSSTRRLNDQRDNCFLIRTGTQ-----VENHYLRVE 93 (108)
T ss_pred eEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhh--eeccCCccCcCCCCceEEEEEcCCc-----eeeEEEEec
Confidence 4799999999999876 111 2234444 222 3443332111111224555553332 367889999
Q ss_pred CchhHHHHHHHHH
Q 010776 169 TSWEKEAWCKALR 181 (501)
Q Consensus 169 Ts~EKEsWc~aLr 181 (501)
|..|.++|-+||-
T Consensus 94 t~~dL~~W~raiv 106 (108)
T cd01258 94 THRDLASWERALV 106 (108)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999985
No 68
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=33.55 E-value=46 Score=28.78 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010776 3 SFFVGLIIGAIGVVAVEAAAVLYFIYKLNQK 33 (501)
Q Consensus 3 ~~~~~f~~G~l~l~~~e~~~~~~~~~rl~~k 33 (501)
+|..|++.|-+.++++=+++++|.++|+..+
T Consensus 29 ~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~ 59 (95)
T PF07178_consen 29 LFVIGILSGHFLIGLILGIVLWWGYRKFKKG 59 (95)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcc
Confidence 4667777777777787788888999998733
No 69
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=32.31 E-value=90 Score=28.27 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCceE
Q 010776 367 GVKSSIQARIQRALSNMRTPSYIGEII 393 (501)
Q Consensus 367 ~l~~~I~~KIqKKL~kIklPsFI~~I~ 393 (501)
+..+...+.||+.|.++++|++.+++.
T Consensus 4 y~~~~~~~~l~~~l~~~~ipdi~~~~~ 30 (164)
T PF01273_consen 4 YANQVGIQILQKELQKIQIPDISGSFS 30 (164)
T ss_dssp HHHHHHHHHHHHHHCC-----EEEEEC
T ss_pred HHHHHHHHHHHHHhhcCCCCCcccccc
Confidence 456777888999999999999887543
No 70
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=29.00 E-value=58 Score=26.83 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=10.9
Q ss_pred Cccch-hHHHHHHHHHHH
Q 010776 1 MISFF-VGLIIGAIGVVA 17 (501)
Q Consensus 1 ~~~~~-~~f~~G~l~l~~ 17 (501)
||.|. +.++.|++++.+
T Consensus 1 M~~F~~P~~L~~Llllp~ 18 (77)
T PF07584_consen 1 MFSFLNPWYLWLLLLLPL 18 (77)
T ss_pred CcchHhHHHHHHHHHHHH
Confidence 77777 666666665443
No 71
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=26.26 E-value=95 Score=29.39 Aligned_cols=26 Identities=8% Similarity=0.280 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010776 6 VGLIIGAIGVVAVEAAAVLYFIYKLN 31 (501)
Q Consensus 6 ~~f~~G~l~l~~~e~~~~~~~~~rl~ 31 (501)
..|.+|.|.++++=++++-|++||+.
T Consensus 24 ~~~~~gsL~~iL~lil~~~wl~kr~~ 49 (137)
T COG3190 24 LAQMFGSLILILALILFLAWLVKRLG 49 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888899999999998
No 72
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=25.93 E-value=98 Score=23.59 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 010776 4 FFVGLIIGAIGVVAVEAAAVLYF 26 (501)
Q Consensus 4 ~~~~f~~G~l~l~~~e~~~~~~~ 26 (501)
|+.+++.|.+.+++.=++++.|+
T Consensus 8 fl~Sl~aG~~iVv~~i~~ali~V 30 (39)
T PF06596_consen 8 FLLSLVAGAVIVVIPIAGALIFV 30 (39)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhheEEE
Confidence 77778888755555544444443
No 73
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=23.74 E-value=93 Score=27.14 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=9.8
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 010776 3 SFFVGLIIGAIGVVAVEAA 21 (501)
Q Consensus 3 ~~~~~f~~G~l~l~~~e~~ 21 (501)
+|+.|+++|...++++=++
T Consensus 29 ~~~~Gi~~~~~l~g~~lg~ 47 (95)
T TIGR02762 29 LFGIGILSGKALIGLILGA 47 (95)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3556666665544444333
No 74
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=23.57 E-value=3.4e+02 Score=24.35 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=44.5
Q ss_pred cceeeeEeeC--ceEEEecCCCC-c--c---EEecCCcEEEEEeCCCccccccc----cccCeeEecCCcccccCceEEE
Q 010776 97 PVRKYAKIKH--RALILTSTDGS-Q--T---SFPLKGCEIKAVSASSLSSRKWA----KRFPIKVENKSSVLYNGSKLIY 164 (501)
Q Consensus 97 P~~k~a~lk~--~~L~L~~~Dg~-~--~---~I~L~gC~V~aVs~s~~~srKWa----KkfPIkve~~~~~iy~~sKv~~ 164 (501)
|-+||.-|.- +.|+=+..+-. . . +=.+.=++|..|..++ +...+. -.+-|-|.. +...+-
T Consensus 30 ~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~-~~~~~~~~~~~~~si~i~t-------~~R~L~ 101 (123)
T PF12814_consen 30 PHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGN-PSPPGLKKPDHNKSIIIVT-------PDRSLD 101 (123)
T ss_pred cEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCC-CCCccccccccceEEEEEc-------CCeEEE
Confidence 5566666644 44555543311 0 0 0123334555565544 333443 334455444 445778
Q ss_pred EEecCchhHHHHHHHHHH
Q 010776 165 IFLETSWEKEAWCKALRL 182 (501)
Q Consensus 165 ~y~eTs~EKEsWc~aLr~ 182 (501)
|=++|.-+-+.|+.||+.
T Consensus 102 l~a~s~~~~~~W~~aL~~ 119 (123)
T PF12814_consen 102 LTAPSRERHEIWFNALRY 119 (123)
T ss_pred EEeCCHHHHHHHHHHHHH
Confidence 899999999999999984
No 75
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=23.55 E-value=39 Score=31.72 Aligned_cols=20 Identities=10% Similarity=0.587 Sum_probs=13.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010776 2 ISFFVGLIIGAIGVVAVEAAAVLYFIYK 29 (501)
Q Consensus 2 ~~~~~~f~~G~l~l~~~e~~~~~~~~~r 29 (501)
++++.|||+|+++ ++||++.
T Consensus 94 ~G~liGff~g~~~--------~~~L~~~ 113 (140)
T PF13373_consen 94 WGLLIGFFFGLFS--------LFWLLRE 113 (140)
T ss_pred HHHHHHHHHHHHh--------HHHHhhc
Confidence 4677888888765 4566654
No 76
>PF05550 Peptidase_C53: Pestivirus Npro endopeptidase C53; InterPro: IPR008751 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C53 (clan C-). The active site residues occur in the order E, H, C in the sequence which is unlike that in any other family. They are unique to pestiviruses. The N-terminal cysteine peptidase (Npro) encoded by the bovine viral diarrhoea virus genome is responsible for the self-cleavage that releases the N terminus of the core protein. This unique protease is dispensable for viral replication, and its coding region can be replaced by a ubiquitin gene directly fused in frame to the core [, , , ].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=23.06 E-value=87 Score=30.20 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=34.4
Q ss_pred cceeeccceeeeEeeCceEEEecCCCC--ccEEecCCcEEE
Q 010776 91 EFLEVYPVRKYAKIKHRALILTSTDGS--QTSFPLKGCEIK 129 (501)
Q Consensus 91 ~~~ev~P~~k~a~lk~~~L~L~~~Dg~--~~~I~L~gC~V~ 129 (501)
.=||.+-+--+|..--++=..+++||. |--+|++||-++
T Consensus 101 APLElf~e~~~CEvTkriGRvTGSDgkLYHiyvC~DgCIll 141 (168)
T PF05550_consen 101 APLELFTETQMCEVTKRIGRVTGSDGKLYHIYVCIDGCILL 141 (168)
T ss_pred chHHhhcccceEeecceEEEEECCCCCEEEEEEeccceEEe
Confidence 578999999999999999999999998 667899999774
No 77
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=22.89 E-value=1e+02 Score=30.39 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 010776 9 IIGAIGVVAVEAAAVLYFIYKLNQK 33 (501)
Q Consensus 9 ~~G~l~l~~~e~~~~~~~~~rl~~k 33 (501)
++|.+.|+++=++++++|+||--|+
T Consensus 153 ~IG~~VlA~~VA~L~~~F~RR~~rr 177 (215)
T PF05084_consen 153 LIGAVVLAVSVAMLTWFFLRRTGRR 177 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6788888888888888887765533
No 78
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=22.80 E-value=1.1e+02 Score=23.04 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 010776 4 FFVGLIIGAIGVVAVEAAAVLYFIY 28 (501)
Q Consensus 4 ~~~~f~~G~l~l~~~e~~~~~~~~~ 28 (501)
.|.|.++|++.+.++-....-|+-.
T Consensus 5 lL~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 6889999999888877666666654
No 79
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=21.69 E-value=1.7e+02 Score=22.11 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 010776 3 SFFVGLIIGAIGVVAVEAAAVLYFIY 28 (501)
Q Consensus 3 ~~~~~f~~G~l~l~~~e~~~~~~~~~ 28 (501)
+.|.|.++|++-+-++-....-|+=.
T Consensus 4 ~lL~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 4 VLLFGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 37899999999888777666666654
No 80
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=21.66 E-value=1.1e+02 Score=26.47 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=17.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 010776 2 ISFFVGLIIGAIGVVAVEAAAVLY 25 (501)
Q Consensus 2 ~~~~~~f~~G~l~l~~~e~~~~~~ 25 (501)
+|+|-||++|++.+++.=.+..++
T Consensus 50 iGIlYG~viGlli~~i~~~~~~~~ 73 (77)
T PRK01026 50 IGILYGLVIGLLIVLVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999877665555444
No 81
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=21.55 E-value=1.7e+02 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 010776 3 SFFVGLIIGAIGVVAVEAAAVLYFIY 28 (501)
Q Consensus 3 ~~~~~f~~G~l~l~~~e~~~~~~~~~ 28 (501)
+.|.|.++|++-+-++-....-|+=.
T Consensus 4 plL~GiVLGlipiTl~GlfvaAylQY 29 (37)
T PRK00665 4 PLLCGIVLGLIPVTLAGLFVAAWNQY 29 (37)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 37899999999888777666666553
No 82
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=20.12 E-value=1.3e+02 Score=36.30 Aligned_cols=102 Identities=17% Similarity=0.300 Sum_probs=64.6
Q ss_pred ccceEEEeCCCCCCc-c--------ccchHHHhhccceee--ccceeeeEeeCceEEEecC------CCCccEEecCCcE
Q 010776 65 KQGYVWVLEPEKVPK-E--------KFSKEQKKKKEFLEV--YPVRKYAKIKHRALILTST------DGSQTSFPLKGCE 127 (501)
Q Consensus 65 ~~g~~Wv~~~~~~~k-~--------k~~ke~k~kk~~~ev--~P~~k~a~lk~~~L~L~~~------Dg~~~~I~L~gC~ 127 (501)
.+|++||.+.....+ + -+|. .+-.-||. +-.+=|+.+-++.+.|-.+ |-..+-|++.+|.
T Consensus 164 ~~r~~w~s~l~s~~~~Q~l~~ap~pp~pP---~raG~lelrg~kak~f~~vsp~~vqL~knlq~f~lgigit~I~m~~~n 240 (1186)
T KOG1117|consen 164 GERFIWVSPLQSALKEQRLRSAPPPPVPP---PRAGWLELRGFKAKLFVAVSPERVQLYKNLQSFPLGIGITFIYMEVSN 240 (1186)
T ss_pred ccceeeechhhhcchhhhhccCCCCCCCC---CCccchhccccccceeEEecCceeeeecccccccCCceeEEEeccccc
Confidence 467889988765554 1 1221 11123333 2345688888889998877 3335678999998
Q ss_pred EEEEeCCCccccccccccCeeEecCCcccccCceEEEEEecCchhHHHHHHHHHHhhccc
Q 010776 128 IKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCED 187 (501)
Q Consensus 128 V~aVs~s~~~srKWaKkfPIkve~~~~~iy~~sKv~~~y~eTs~EKEsWc~aLr~As~~~ 187 (501)
|.-|+. | -| + |---...+=||+|++-||+.|-.|+--|-.++
T Consensus 241 vk~vdr-----~----sf----d-----l~Tp~r~fsftaese~erq~w~ea~q~siAeT 282 (1186)
T KOG1117|consen 241 VKEVDR-----R----SF----D-----LNTPYREFSFTAESETERQIWGEAPQPSIAET 282 (1186)
T ss_pred cccccc-----c----ee----c-----cCCceeeeeeeeccchhhhhhhhccCcccccc
Confidence 876654 1 11 1 11223457799999999999999887665544
Done!