Query 010777
Match_columns 501
No_of_seqs 495 out of 3535
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0273 Beta-transducin family 100.0 5.6E-66 1.2E-70 469.3 39.1 356 139-501 165-524 (524)
2 KOG0271 Notchless-like WD40 re 100.0 9.7E-59 2.1E-63 411.6 30.2 327 146-498 108-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 4.4E-51 9.6E-56 362.9 27.2 288 144-457 148-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-49 4E-54 357.1 23.7 282 150-498 172-458 (459)
5 KOG0286 G-protein beta subunit 100.0 9.6E-45 2.1E-49 312.2 32.8 285 146-457 48-343 (343)
6 KOG0279 G protein beta subunit 100.0 1.1E-43 2.3E-48 304.0 31.6 289 147-500 9-313 (315)
7 KOG0318 WD40 repeat stress pro 100.0 1.6E-41 3.4E-46 313.7 39.6 354 146-501 52-561 (603)
8 KOG0286 G-protein beta subunit 100.0 1.1E-41 2.4E-46 293.3 33.0 280 210-498 53-343 (343)
9 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-44 1.4E-48 321.3 20.0 248 144-457 208-458 (459)
10 KOG0282 mRNA splicing factor [ 100.0 5.8E-43 1.3E-47 320.5 23.2 297 136-457 197-503 (503)
11 KOG0296 Angio-associated migra 100.0 7.5E-41 1.6E-45 296.5 34.4 333 143-500 54-398 (399)
12 KOG0295 WD40 repeat-containing 100.0 8.9E-42 1.9E-46 302.1 27.1 299 144-500 99-406 (406)
13 KOG0319 WD40-repeat-containing 100.0 4.8E-41 1E-45 322.2 31.7 336 139-500 89-577 (775)
14 KOG0263 Transcription initiati 100.0 1.5E-41 3.2E-46 329.1 26.3 311 141-488 366-703 (707)
15 KOG0645 WD40 repeat protein [G 100.0 4E-39 8.8E-44 274.8 33.3 289 146-500 7-311 (312)
16 KOG0284 Polyadenylation factor 100.0 1.5E-41 3.3E-46 304.7 19.2 278 212-498 96-378 (464)
17 KOG0285 Pleiotropic regulator 100.0 1.9E-40 4.1E-45 292.9 25.7 290 140-498 138-437 (460)
18 KOG0291 WD40-repeat-containing 100.0 1.4E-38 3.1E-43 305.6 39.3 333 144-500 136-550 (893)
19 KOG0315 G-protein beta subunit 100.0 3.6E-39 7.7E-44 271.8 30.1 285 166-478 11-308 (311)
20 KOG0284 Polyadenylation factor 100.0 3.1E-40 6.8E-45 296.3 20.2 282 153-459 96-380 (464)
21 KOG0318 WD40 repeat stress pro 100.0 2.6E-37 5.7E-42 285.8 39.7 330 147-500 184-602 (603)
22 KOG0319 WD40-repeat-containing 100.0 7.9E-39 1.7E-43 307.0 29.5 344 145-497 184-616 (775)
23 KOG0279 G protein beta subunit 100.0 1E-38 2.2E-43 273.5 27.0 246 145-459 55-313 (315)
24 KOG0291 WD40-repeat-containing 100.0 3.7E-37 8.1E-42 295.8 37.5 325 149-500 261-612 (893)
25 KOG0263 Transcription initiati 100.0 5.9E-39 1.3E-43 311.0 22.9 270 212-500 378-649 (707)
26 KOG0265 U5 snRNP-specific prot 100.0 2.2E-37 4.8E-42 267.8 29.5 279 209-497 44-335 (338)
27 KOG0265 U5 snRNP-specific prot 100.0 1.4E-37 3.1E-42 269.0 28.1 285 146-456 40-335 (338)
28 PLN00181 protein SPA1-RELATED; 100.0 3.4E-36 7.3E-41 321.6 42.8 289 149-499 479-792 (793)
29 KOG0266 WD40 repeat-containing 100.0 6.4E-37 1.4E-41 304.8 34.3 289 146-499 151-453 (456)
30 cd00200 WD40 WD40 domain, foun 100.0 3E-36 6.6E-41 283.6 37.1 285 147-457 3-289 (289)
31 KOG0273 Beta-transducin family 100.0 1.5E-36 3.3E-41 277.3 31.8 277 154-459 236-523 (524)
32 KOG0299 U3 snoRNP-associated p 100.0 2.5E-37 5.5E-42 281.9 25.8 298 146-456 135-453 (479)
33 KOG0296 Angio-associated migra 100.0 5.1E-36 1.1E-40 265.8 29.2 286 146-459 99-398 (399)
34 cd00200 WD40 WD40 domain, foun 100.0 4.5E-35 9.8E-40 275.6 37.8 280 210-498 7-289 (289)
35 KOG0281 Beta-TrCP (transducin 100.0 1.4E-37 3E-42 273.8 16.3 268 211-500 196-477 (499)
36 KOG0293 WD40 repeat-containing 100.0 2.9E-36 6.3E-41 271.0 24.8 301 138-460 209-514 (519)
37 KOG0276 Vesicle coat complex C 100.0 2.6E-36 5.7E-41 284.3 25.4 285 148-496 8-295 (794)
38 KOG0315 G-protein beta subunit 100.0 9.4E-35 2E-39 245.1 29.9 265 225-500 11-288 (311)
39 KOG0316 Conserved WD40 repeat- 100.0 6.2E-35 1.4E-39 244.2 26.8 290 140-457 4-297 (307)
40 KOG0316 Conserved WD40 repeat- 100.0 3.9E-35 8.5E-40 245.5 23.2 242 245-499 9-256 (307)
41 KOG0772 Uncharacterized conser 100.0 6.8E-35 1.5E-39 269.1 26.2 304 138-497 152-484 (641)
42 KOG0288 WD40 repeat protein Ti 100.0 5.7E-36 1.2E-40 269.4 18.4 289 140-497 162-458 (459)
43 KOG0282 mRNA splicing factor [ 100.0 7.5E-36 1.6E-40 273.8 19.5 283 206-498 208-503 (503)
44 KOG0281 Beta-TrCP (transducin 100.0 4.1E-36 8.8E-41 264.5 17.0 273 152-463 196-481 (499)
45 KOG1407 WD40 repeat protein [F 100.0 6.5E-34 1.4E-38 241.7 28.3 283 207-499 15-310 (313)
46 KOG0285 Pleiotropic regulator 100.0 5.6E-35 1.2E-39 258.3 22.3 246 244-500 142-389 (460)
47 KOG0313 Microtubule binding pr 100.0 2.5E-34 5.4E-39 256.3 25.8 279 151-459 103-418 (423)
48 KOG0306 WD40-repeat-containing 100.0 9.5E-34 2E-38 272.4 30.8 294 147-498 367-662 (888)
49 KOG0295 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 256.7 20.8 253 239-500 94-364 (406)
50 KOG0292 Vesicle coat complex C 100.0 7.5E-34 1.6E-38 277.3 27.9 279 211-499 8-320 (1202)
51 KOG0275 Conserved WD40 repeat- 100.0 1.5E-34 3.2E-39 252.6 20.0 289 151-498 211-507 (508)
52 KOG0306 WD40-repeat-containing 100.0 9.6E-33 2.1E-37 265.5 34.3 320 153-500 65-580 (888)
53 KOG0266 WD40 repeat-containing 100.0 4.6E-33 1E-37 277.1 31.0 240 212-500 159-409 (456)
54 KOG0292 Vesicle coat complex C 100.0 1.3E-32 2.8E-37 268.6 32.9 284 149-459 5-321 (1202)
55 KOG0973 Histone transcription 100.0 4.3E-33 9.2E-38 279.4 29.2 294 152-500 12-355 (942)
56 KOG0645 WD40 repeat protein [G 100.0 2.1E-32 4.5E-37 233.8 28.9 236 210-498 12-259 (312)
57 KOG0313 Microtubule binding pr 100.0 7.7E-33 1.7E-37 246.8 26.9 274 211-498 104-416 (423)
58 KOG1407 WD40 repeat protein [F 100.0 2.4E-32 5.2E-37 232.2 28.6 277 147-450 14-293 (313)
59 KOG0293 WD40 repeat-containing 100.0 4.6E-33 9.9E-38 250.5 24.1 280 209-499 221-512 (519)
60 KOG0643 Translation initiation 100.0 2.3E-31 4.9E-36 227.0 27.9 280 210-500 8-317 (327)
61 KOG0283 WD40 repeat-containing 100.0 3.2E-32 6.9E-37 266.6 24.7 292 151-499 265-575 (712)
62 KOG0274 Cdc4 and related F-box 100.0 1.3E-31 2.9E-36 265.7 29.4 271 212-501 208-483 (537)
63 KOG0276 Vesicle coat complex C 100.0 3.3E-32 7.2E-37 256.7 22.6 245 247-499 7-256 (794)
64 KOG0641 WD40 repeat protein [G 100.0 9.6E-30 2.1E-34 211.9 34.4 297 152-459 31-349 (350)
65 KOG0274 Cdc4 and related F-box 100.0 3.8E-31 8.2E-36 262.5 29.7 285 148-467 202-490 (537)
66 KOG0277 Peroxisomal targeting 100.0 9.9E-32 2.1E-36 227.6 21.7 275 216-498 12-307 (311)
67 KOG0278 Serine/threonine kinas 100.0 2.5E-32 5.3E-37 230.6 18.0 282 147-498 8-295 (334)
68 KOG1063 RNA polymerase II elon 100.0 1E-30 2.2E-35 249.6 29.9 335 147-500 261-699 (764)
69 KOG0310 Conserved WD40 repeat- 100.0 5.6E-31 1.2E-35 242.4 26.4 274 212-497 26-306 (487)
70 KOG0268 Sof1-like rRNA process 100.0 2.4E-32 5.3E-37 242.2 16.1 280 147-499 60-344 (433)
71 KOG0305 Anaphase promoting com 100.0 1.3E-30 2.8E-35 249.1 29.0 272 216-499 181-460 (484)
72 KOG0277 Peroxisomal targeting 100.0 4.7E-31 1E-35 223.5 22.8 279 157-458 12-308 (311)
73 PLN00181 protein SPA1-RELATED; 100.0 5.1E-30 1.1E-34 274.1 36.4 238 209-499 480-737 (793)
74 KOG0640 mRNA cleavage stimulat 100.0 6.6E-31 1.4E-35 228.5 23.8 304 141-499 100-425 (430)
75 PTZ00421 coronin; Provisional 100.0 5.2E-30 1.1E-34 254.2 33.1 276 152-481 19-314 (493)
76 KOG0643 Translation initiation 100.0 7E-31 1.5E-35 224.0 22.4 287 147-459 4-317 (327)
77 PTZ00421 coronin; Provisional 100.0 1.1E-29 2.5E-34 251.8 33.7 244 214-500 22-290 (493)
78 KOG0647 mRNA export protein (c 100.0 6.5E-30 1.4E-34 221.8 27.5 269 152-489 26-312 (347)
79 KOG1446 Histone H3 (Lys4) meth 100.0 5.7E-29 1.2E-33 218.0 33.5 278 149-497 10-300 (311)
80 KOG0641 WD40 repeat protein [G 100.0 7.8E-29 1.7E-33 206.5 31.8 278 212-499 32-348 (350)
81 KOG0289 mRNA splicing factor [ 100.0 3.5E-29 7.6E-34 227.0 28.3 282 153-499 219-505 (506)
82 KOG1539 WD repeat protein [Gen 100.0 6.4E-28 1.4E-32 235.1 38.9 330 143-498 192-646 (910)
83 KOG0278 Serine/threonine kinas 100.0 1E-30 2.2E-35 220.9 16.2 247 146-463 52-301 (334)
84 KOG0300 WD40 repeat-containing 100.0 6.5E-30 1.4E-34 223.0 21.4 285 146-499 141-475 (481)
85 KOG0973 Histone transcription 100.0 3.2E-29 7E-34 251.6 27.2 284 144-463 60-359 (942)
86 KOG0299 U3 snoRNP-associated p 100.0 5.5E-29 1.2E-33 227.6 25.8 268 211-489 141-444 (479)
87 KOG0301 Phospholipase A2-activ 100.0 6.4E-29 1.4E-33 237.6 27.1 278 147-459 8-288 (745)
88 PTZ00420 coronin; Provisional 100.0 7.6E-28 1.7E-32 239.7 34.5 245 170-482 49-318 (568)
89 KOG0294 WD40 repeat-containing 100.0 3.3E-28 7.2E-33 212.4 27.2 260 145-477 35-304 (362)
90 KOG2096 WD40 repeat protein [G 100.0 2.4E-28 5.2E-33 213.4 26.1 291 142-457 75-400 (420)
91 KOG0305 Anaphase promoting com 100.0 3E-28 6.6E-33 233.0 28.7 276 157-461 181-463 (484)
92 PTZ00420 coronin; Provisional 100.0 1.5E-27 3.3E-32 237.6 34.4 227 230-500 50-293 (568)
93 KOG0301 Phospholipase A2-activ 100.0 2.5E-28 5.5E-33 233.5 27.2 273 208-500 10-288 (745)
94 KOG1036 Mitotic spindle checkp 100.0 8E-28 1.7E-32 209.7 27.9 266 153-490 13-294 (323)
95 KOG0308 Conserved WD40 repeat- 100.0 2.9E-29 6.4E-34 238.1 20.4 296 151-499 19-326 (735)
96 KOG0310 Conserved WD40 repeat- 100.0 1E-27 2.3E-32 220.9 28.3 276 153-458 26-308 (487)
97 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-27 6.6E-32 207.1 29.7 242 248-500 9-262 (311)
98 KOG1408 WD40 repeat protein [F 100.0 1.1E-27 2.4E-32 229.3 28.4 319 156-499 327-712 (1080)
99 KOG0639 Transducin-like enhanc 100.0 1.4E-28 3.1E-33 226.7 21.6 285 151-500 417-704 (705)
100 KOG1063 RNA polymerase II elon 100.0 2.2E-27 4.7E-32 227.0 28.8 346 144-499 182-647 (764)
101 KOG0275 Conserved WD40 repeat- 100.0 1.9E-28 4.1E-33 214.5 18.8 238 212-499 213-466 (508)
102 KOG2106 Uncharacterized conser 100.0 7.2E-26 1.6E-30 209.2 35.7 338 144-497 95-518 (626)
103 KOG0289 mRNA splicing factor [ 100.0 2.7E-27 5.9E-32 214.8 24.2 236 212-497 219-459 (506)
104 KOG1332 Vesicle coat complex C 100.0 9.8E-28 2.1E-32 202.3 19.3 254 148-459 6-286 (299)
105 KOG0264 Nucleosome remodeling 100.0 4E-27 8.7E-32 215.5 24.9 257 149-459 120-404 (422)
106 KOG0772 Uncharacterized conser 100.0 8.3E-28 1.8E-32 222.5 19.7 252 210-499 165-444 (641)
107 KOG1332 Vesicle coat complex C 100.0 1E-27 2.2E-32 202.2 17.9 247 211-498 10-284 (299)
108 KOG0288 WD40 repeat protein Ti 100.0 2.4E-28 5.2E-33 220.4 14.7 241 247-500 169-417 (459)
109 KOG0650 WD40 repeat nucleolar 100.0 2.6E-27 5.6E-32 222.9 22.0 295 135-456 382-732 (733)
110 KOG0294 WD40 repeat-containing 100.0 3.9E-26 8.3E-31 199.6 26.0 261 226-501 3-282 (362)
111 KOG0300 WD40 repeat-containing 100.0 1.4E-26 3.1E-31 202.2 21.7 273 208-499 144-427 (481)
112 KOG0308 Conserved WD40 repeat- 100.0 3.4E-27 7.3E-32 224.2 19.1 231 222-500 35-285 (735)
113 KOG0269 WD40 repeat-containing 100.0 4.5E-27 9.7E-32 227.6 19.5 287 156-462 42-343 (839)
114 KOG4283 Transcription-coupled 100.0 1.1E-25 2.4E-30 194.8 26.0 300 149-458 39-364 (397)
115 KOG0640 mRNA cleavage stimulat 100.0 9E-27 2E-31 202.9 19.2 256 146-459 165-426 (430)
116 KOG2445 Nuclear pore complex c 100.0 1.8E-25 3.9E-30 194.7 26.8 283 149-480 9-342 (361)
117 KOG0267 Microtubule severing p 99.9 5E-28 1.1E-32 232.3 11.3 256 163-491 2-259 (825)
118 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.5E-24 5.5E-29 205.0 36.8 286 165-480 1-300 (300)
119 KOG0264 Nucleosome remodeling 99.9 2.8E-26 6E-31 210.0 21.8 248 210-499 122-403 (422)
120 KOG1274 WD40 repeat protein [G 99.9 3E-25 6.5E-30 219.0 30.5 270 211-494 12-294 (933)
121 KOG1408 WD40 repeat protein [F 99.9 3.4E-26 7.4E-31 219.2 22.1 285 167-460 394-714 (1080)
122 KOG2055 WD40 repeat protein [G 99.9 2.3E-25 5.1E-30 203.9 25.7 282 153-500 213-512 (514)
123 KOG0283 WD40 repeat-containing 99.9 5E-26 1.1E-30 223.3 21.9 242 248-500 261-532 (712)
124 KOG2096 WD40 repeat protein [G 99.9 7.9E-25 1.7E-29 191.5 26.6 276 210-497 84-399 (420)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.1E-24 1.8E-28 201.5 35.4 264 225-500 2-279 (300)
126 KOG1274 WD40 repeat protein [G 99.9 5.8E-25 1.3E-29 217.0 26.7 241 250-500 10-262 (933)
127 KOG0268 Sof1-like rRNA process 99.9 1.6E-26 3.4E-31 205.5 13.6 242 245-500 58-302 (433)
128 KOG0647 mRNA export protein (c 99.9 7.2E-25 1.6E-29 190.6 23.3 236 211-500 26-281 (347)
129 KOG1539 WD repeat protein [Gen 99.9 1.8E-23 3.8E-28 204.3 34.5 324 149-499 155-605 (910)
130 KOG0269 WD40 repeat-containing 99.9 1.5E-25 3.3E-30 217.0 18.2 237 256-501 42-297 (839)
131 KOG1273 WD40 repeat protein [G 99.9 5.2E-24 1.1E-28 186.2 24.0 273 215-499 26-321 (405)
132 KOG0646 WD40 repeat protein [G 99.9 2.9E-24 6.4E-29 197.1 22.1 248 225-482 51-331 (476)
133 KOG4283 Transcription-coupled 99.9 2.5E-23 5.4E-28 180.3 25.4 276 211-498 42-363 (397)
134 KOG0267 Microtubule severing p 99.9 9.2E-26 2E-30 216.9 11.2 238 147-451 22-260 (825)
135 KOG2048 WD40 repeat protein [G 99.9 3.4E-22 7.4E-27 191.4 35.3 224 147-388 62-301 (691)
136 KOG1445 Tumor-specific antigen 99.9 6.1E-24 1.3E-28 201.4 23.1 152 339-499 630-797 (1012)
137 KOG2048 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 194.4 31.4 278 153-497 25-316 (691)
138 KOG2106 Uncharacterized conser 99.9 2.1E-22 4.6E-27 186.4 31.7 315 153-499 246-625 (626)
139 KOG0646 WD40 repeat protein [G 99.9 3.6E-23 7.8E-28 190.1 25.3 263 229-500 12-307 (476)
140 KOG2445 Nuclear pore complex c 99.9 5.9E-23 1.3E-27 179.2 25.2 243 249-498 9-316 (361)
141 KOG4378 Nuclear protein COP1 [ 99.9 6.8E-24 1.5E-28 195.8 20.3 268 170-501 7-281 (673)
142 KOG0642 Cell-cycle nuclear pro 99.9 5.2E-24 1.1E-28 199.9 17.8 268 144-430 285-574 (577)
143 KOG0302 Ribosome Assembly prot 99.9 2.5E-23 5.5E-28 186.0 20.9 259 148-497 146-435 (440)
144 COG2319 FOG: WD40 repeat [Gene 99.9 2.6E-20 5.6E-25 185.5 43.7 327 148-500 60-400 (466)
145 KOG1036 Mitotic spindle checkp 99.9 5.4E-22 1.2E-26 173.4 24.5 234 212-500 13-262 (323)
146 KOG0270 WD40 repeat-containing 99.9 8.9E-23 1.9E-27 186.4 20.4 229 223-500 191-449 (463)
147 KOG1009 Chromatin assembly com 99.9 3.9E-22 8.4E-27 180.3 24.1 295 153-499 13-371 (434)
148 KOG0639 Transducin-like enhanc 99.9 2.6E-23 5.6E-28 192.2 16.8 236 155-458 467-703 (705)
149 KOG4328 WD40 protein [Function 99.9 2.8E-22 6.1E-27 183.7 23.4 279 210-498 184-493 (498)
150 KOG2919 Guanine nucleotide-bin 99.9 5.5E-22 1.2E-26 174.2 23.7 288 157-492 53-362 (406)
151 KOG1034 Transcriptional repres 99.9 7.3E-22 1.6E-26 173.8 24.5 297 147-500 32-383 (385)
152 KOG0302 Ribosome Assembly prot 99.9 1.2E-22 2.6E-27 181.7 18.9 219 248-500 146-378 (440)
153 KOG1273 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 169.6 25.9 289 141-459 13-322 (405)
154 KOG4328 WD40 protein [Function 99.9 1.4E-21 3.1E-26 179.1 24.7 290 147-459 180-495 (498)
155 KOG1538 Uncharacterized conser 99.9 1.4E-21 3E-26 186.5 24.0 276 155-499 14-292 (1081)
156 KOG0321 WD40 repeat-containing 99.9 1.6E-21 3.6E-26 185.4 23.5 267 224-499 64-390 (720)
157 COG2319 FOG: WD40 repeat [Gene 99.9 5E-19 1.1E-23 176.2 42.9 328 145-500 100-442 (466)
158 KOG0650 WD40 repeat nucleolar 99.9 2.9E-21 6.3E-26 182.4 24.6 280 208-497 396-732 (733)
159 KOG0307 Vesicle coat complex C 99.9 1.8E-22 3.9E-27 204.3 16.9 242 213-462 65-330 (1049)
160 KOG0270 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 179.3 19.9 249 165-422 192-454 (463)
161 KOG0322 G-protein beta subunit 99.9 4.1E-22 9E-27 170.3 16.1 287 141-458 2-322 (323)
162 KOG0321 WD40 repeat-containing 99.9 2.4E-21 5.2E-26 184.3 22.6 285 157-461 53-393 (720)
163 KOG2055 WD40 repeat protein [G 99.9 4.7E-21 1E-25 175.9 22.0 244 152-459 256-512 (514)
164 KOG0307 Vesicle coat complex C 99.9 5.2E-22 1.1E-26 201.0 15.5 275 217-500 11-327 (1049)
165 KOG4378 Nuclear protein COP1 [ 99.9 5.4E-21 1.2E-25 176.7 20.2 262 155-441 36-305 (673)
166 KOG4227 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 169.4 22.0 293 147-459 50-387 (609)
167 KOG0644 Uncharacterized conser 99.9 1E-21 2.2E-26 191.8 13.3 281 146-498 183-466 (1113)
168 KOG1009 Chromatin assembly com 99.9 3.8E-20 8.3E-25 167.5 22.4 293 147-463 59-376 (434)
169 KOG1007 WD repeat protein TSSC 99.9 3.5E-20 7.7E-25 160.5 20.0 256 147-459 57-361 (370)
170 KOG1524 WD40 repeat-containing 99.9 3.1E-20 6.7E-25 173.3 20.4 271 152-456 13-283 (737)
171 KOG1587 Cytoplasmic dynein int 99.9 2E-19 4.3E-24 177.7 26.6 241 212-460 242-517 (555)
172 KOG0649 WD40 repeat protein [G 99.8 1.9E-18 4.1E-23 146.4 26.2 267 215-500 13-317 (325)
173 KOG1963 WD40 repeat protein [G 99.8 8.1E-18 1.8E-22 166.6 31.7 279 210-500 203-538 (792)
174 KOG1538 Uncharacterized conser 99.8 1.6E-17 3.4E-22 159.2 32.5 220 144-365 44-292 (1081)
175 KOG1007 WD repeat protein TSSC 99.8 1.2E-18 2.7E-23 151.0 22.4 258 233-499 39-360 (370)
176 KOG1963 WD40 repeat protein [G 99.8 1.4E-18 3E-23 172.0 25.7 330 150-500 202-583 (792)
177 KOG2919 Guanine nucleotide-bin 99.8 5.1E-19 1.1E-23 155.7 20.2 235 256-500 52-327 (406)
178 KOG1517 Guanine nucleotide bin 99.8 2.2E-18 4.7E-23 172.9 26.4 284 152-499 1063-1380(1387)
179 KOG0642 Cell-cycle nuclear pro 99.8 8.9E-20 1.9E-24 171.7 14.6 297 159-465 234-567 (577)
180 KOG0303 Actin-binding protein 99.8 1E-18 2.2E-23 157.6 20.2 209 248-500 76-294 (472)
181 KOG0322 G-protein beta subunit 99.8 6.9E-19 1.5E-23 150.7 17.6 276 210-499 12-322 (323)
182 KOG1034 Transcriptional repres 99.8 4.3E-19 9.3E-24 156.5 16.2 267 152-459 88-383 (385)
183 PRK11028 6-phosphogluconolacto 99.8 1.1E-16 2.4E-21 154.3 33.6 270 169-500 6-304 (330)
184 KOG1524 WD40 repeat-containing 99.8 4.5E-18 9.8E-23 159.0 21.1 263 211-498 13-284 (737)
185 KOG1523 Actin-related protein 99.8 6.3E-18 1.4E-22 148.8 20.5 231 212-490 10-269 (361)
186 KOG0290 Conserved WD40 repeat- 99.8 2E-17 4.2E-22 143.8 22.2 271 213-492 45-358 (364)
187 KOG1188 WD40 repeat protein [G 99.8 6.5E-18 1.4E-22 150.0 19.3 266 225-498 41-344 (376)
188 KOG1587 Cytoplasmic dynein int 99.8 5.6E-17 1.2E-21 160.4 27.8 257 234-499 222-515 (555)
189 KOG1334 WD40 repeat protein [G 99.8 1.4E-18 3.1E-23 160.8 13.7 290 147-461 136-468 (559)
190 KOG2110 Uncharacterized conser 99.8 1.5E-15 3.3E-20 136.5 31.6 239 153-460 5-249 (391)
191 KOG2110 Uncharacterized conser 99.8 5.9E-16 1.3E-20 139.1 27.8 233 212-500 5-248 (391)
192 KOG1310 WD40 repeat protein [G 99.8 6.8E-17 1.5E-21 151.7 21.8 205 147-367 44-304 (758)
193 KOG0303 Actin-binding protein 99.8 4.8E-18 1E-22 153.3 13.5 159 331-498 76-247 (472)
194 KOG1272 WD40-repeat-containing 99.8 2.2E-18 4.7E-23 158.7 11.1 227 257-497 133-359 (545)
195 PRK01742 tolB translocation pr 99.8 7.8E-17 1.7E-21 160.3 23.0 213 212-481 203-426 (429)
196 PRK01742 tolB translocation pr 99.8 6.6E-17 1.4E-21 160.8 21.8 211 233-499 183-400 (429)
197 KOG0649 WD40 repeat protein [G 99.8 1.8E-15 4E-20 128.4 26.3 277 155-457 12-314 (325)
198 KOG0290 Conserved WD40 repeat- 99.7 2.2E-16 4.7E-21 137.3 20.0 229 151-390 94-347 (364)
199 PRK11028 6-phosphogluconolacto 99.7 3.7E-15 7.9E-20 143.8 30.1 265 153-478 34-327 (330)
200 KOG4497 Uncharacterized conser 99.7 2.7E-15 5.9E-20 132.7 24.6 304 158-493 13-425 (447)
201 KOG2111 Uncharacterized conser 99.7 3.6E-15 7.7E-20 131.6 25.3 235 255-500 7-256 (346)
202 KOG1517 Guanine nucleotide bin 99.7 4.5E-16 9.8E-21 156.5 22.2 255 154-462 1110-1384(1387)
203 KOG0771 Prolactin regulatory e 99.7 1.5E-15 3.3E-20 138.9 22.9 195 299-499 148-353 (398)
204 KOG1523 Actin-related protein 99.7 2.2E-15 4.8E-20 132.9 22.8 237 153-450 10-269 (361)
205 KOG2139 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 130.5 27.2 276 154-499 99-430 (445)
206 PF02239 Cytochrom_D1: Cytochr 99.7 2.6E-14 5.6E-19 137.8 30.5 305 168-499 9-346 (369)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 5.3E-16 1.1E-20 145.6 17.7 195 222-439 183-384 (636)
208 KOG4227 WD40 repeat protein [G 99.7 4.2E-15 9E-20 134.3 22.5 279 209-498 53-385 (609)
209 KOG0771 Prolactin regulatory e 99.7 5.8E-16 1.3E-20 141.6 16.2 196 216-460 148-355 (398)
210 KOG1445 Tumor-specific antigen 99.7 5.3E-16 1.1E-20 148.0 16.5 235 221-499 588-843 (1012)
211 KOG0644 Uncharacterized conser 99.7 6.7E-17 1.5E-21 158.6 9.7 233 248-499 185-425 (1113)
212 KOG1240 Protein kinase contain 99.7 1.3E-14 2.8E-19 148.4 26.3 304 143-457 1038-1431(1431)
213 KOG1272 WD40-repeat-containing 99.7 1.7E-16 3.8E-21 146.2 11.8 266 155-452 131-402 (545)
214 KOG3881 Uncharacterized conser 99.7 9.5E-15 2.1E-19 132.3 22.6 275 153-482 55-343 (412)
215 KOG2111 Uncharacterized conser 99.7 4.9E-13 1.1E-17 118.3 31.4 234 214-460 7-257 (346)
216 KOG1188 WD40 repeat protein [G 99.7 2.4E-15 5.2E-20 133.8 16.7 185 307-500 41-242 (376)
217 KOG1334 WD40 repeat protein [G 99.7 8.3E-16 1.8E-20 142.6 14.4 283 207-498 137-464 (559)
218 KOG2139 WD40 repeat protein [G 99.7 9.5E-15 2.1E-19 130.9 20.2 240 213-493 99-368 (445)
219 PF08662 eIF2A: Eukaryotic tra 99.7 1.2E-14 2.7E-19 127.4 20.7 150 340-500 9-179 (194)
220 PRK05137 tolB translocation pr 99.7 9.7E-14 2.1E-18 138.7 28.9 212 234-499 182-411 (435)
221 PRK04922 tolB translocation pr 99.7 5E-14 1.1E-18 140.6 25.8 213 234-499 184-410 (433)
222 PRK03629 tolB translocation pr 99.7 1.7E-13 3.7E-18 136.1 29.3 216 212-481 198-428 (429)
223 KOG1310 WD40 repeat protein [G 99.6 2.3E-15 5.1E-20 141.5 14.5 164 246-417 43-231 (758)
224 KOG2321 WD40 repeat protein [G 99.6 6.3E-14 1.4E-18 132.8 23.8 274 210-497 49-340 (703)
225 PRK05137 tolB translocation pr 99.6 2.1E-13 4.6E-18 136.2 29.0 215 212-481 201-433 (435)
226 PRK03629 tolB translocation pr 99.6 3.1E-13 6.7E-18 134.3 29.2 212 234-499 179-405 (429)
227 PRK04922 tolB translocation pr 99.6 1.3E-13 2.8E-18 137.6 26.5 214 212-480 203-432 (433)
228 KOG1354 Serine/threonine prote 99.6 2.4E-14 5.3E-19 127.5 18.3 267 212-499 25-358 (433)
229 PRK02889 tolB translocation pr 99.6 6.6E-14 1.4E-18 139.2 23.8 206 234-492 176-392 (427)
230 KOG1409 Uncharacterized conser 99.6 6.7E-14 1.4E-18 124.8 20.6 245 147-418 18-271 (404)
231 PRK02889 tolB translocation pr 99.6 2.9E-13 6.2E-18 134.7 25.8 215 212-481 195-425 (427)
232 PF08662 eIF2A: Eukaryotic tra 99.6 2.4E-13 5.3E-18 119.2 21.9 118 335-467 58-186 (194)
233 KOG1354 Serine/threonine prote 99.6 4.8E-13 1E-17 119.4 20.0 315 153-497 25-431 (433)
234 COG5354 Uncharacterized protei 99.6 6.6E-12 1.4E-16 117.8 27.7 313 152-499 31-394 (561)
235 KOG0974 WD-repeat protein WDR6 99.6 3.5E-13 7.5E-18 136.4 20.4 221 225-460 62-289 (967)
236 KOG2321 WD40 repeat protein [G 99.5 2.6E-12 5.6E-17 122.0 23.7 280 152-460 50-344 (703)
237 KOG1240 Protein kinase contain 99.5 1.9E-12 4E-17 133.0 24.3 252 239-499 1034-1333(1431)
238 KOG4497 Uncharacterized conser 99.5 1.8E-12 3.8E-17 115.1 21.0 271 217-498 13-389 (447)
239 TIGR02800 propeller_TolB tol-p 99.5 6.1E-12 1.3E-16 125.7 27.9 206 234-492 170-386 (417)
240 KOG2041 WD40 repeat protein [G 99.5 4E-12 8.8E-17 123.5 24.3 296 154-500 15-337 (1189)
241 KOG2315 Predicted translation 99.5 1.7E-11 3.6E-16 116.5 28.0 273 212-499 34-389 (566)
242 KOG0974 WD-repeat protein WDR6 99.5 1.8E-11 4E-16 124.1 29.0 199 154-367 88-289 (967)
243 KOG2394 WD40 protein DMR-N9 [G 99.5 8.3E-13 1.8E-17 124.4 17.7 241 213-479 124-383 (636)
244 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.5E-16 122.7 28.1 212 213-479 190-417 (417)
245 PRK00178 tolB translocation pr 99.5 3.6E-11 7.8E-16 120.4 28.6 212 235-499 180-405 (430)
246 PRK01029 tolB translocation pr 99.5 2.6E-11 5.6E-16 120.1 26.7 216 234-499 165-402 (428)
247 PRK01029 tolB translocation pr 99.5 2.7E-11 5.8E-16 120.0 26.7 222 214-482 186-426 (428)
248 KOG2315 Predicted translation 99.5 1.6E-11 3.4E-16 116.7 23.2 293 155-481 75-411 (566)
249 KOG3881 Uncharacterized conser 99.5 1.1E-11 2.4E-16 112.7 21.0 238 254-500 56-320 (412)
250 PRK00178 tolB translocation pr 99.4 5.4E-11 1.2E-15 119.1 26.4 216 212-481 198-428 (430)
251 PF02239 Cytochrom_D1: Cytochr 99.4 2.6E-10 5.5E-15 110.2 29.9 265 227-500 9-302 (369)
252 KOG4547 WD40 repeat-containing 99.4 3E-11 6.6E-16 115.6 22.9 225 262-497 2-267 (541)
253 PRK04792 tolB translocation pr 99.4 7.2E-11 1.6E-15 117.9 26.9 212 235-499 199-424 (448)
254 PF10282 Lactonase: Lactonase, 99.4 6.9E-09 1.5E-13 100.3 38.4 265 227-500 2-322 (345)
255 PRK04792 tolB translocation pr 99.4 1.5E-10 3.3E-15 115.6 27.5 216 212-481 217-447 (448)
256 KOG1064 RAVE (regulator of V-A 99.4 1.9E-12 4.2E-17 137.1 12.6 202 148-426 2203-2407(2439)
257 KOG2314 Translation initiation 99.4 3.8E-10 8.2E-15 107.2 26.1 314 157-500 214-573 (698)
258 PF10282 Lactonase: Lactonase, 99.4 4.2E-08 9E-13 94.9 40.0 258 213-478 37-345 (345)
259 KOG2314 Translation initiation 99.4 2.8E-10 6E-15 108.1 23.8 274 215-500 213-525 (698)
260 KOG0280 Uncharacterized conser 99.4 8.7E-11 1.9E-15 103.1 18.0 176 309-492 88-277 (339)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.4E-08 5.2E-13 94.4 35.1 239 220-469 53-340 (352)
262 KOG4547 WD40 repeat-containing 99.3 3.7E-10 8E-15 108.3 22.4 209 162-418 2-221 (541)
263 TIGR03300 assembly_YfgL outer 99.3 1.5E-08 3.3E-13 99.7 35.0 293 164-497 64-376 (377)
264 PF04762 IKI3: IKI3 family; I 99.3 3.6E-09 7.8E-14 113.3 32.2 273 212-500 75-379 (928)
265 PF04762 IKI3: IKI3 family; I 99.3 1.7E-08 3.7E-13 108.2 37.1 319 152-499 74-518 (928)
266 PLN02919 haloacid dehalogenase 99.3 3.4E-09 7.4E-14 115.6 31.7 249 216-500 571-888 (1057)
267 KOG2041 WD40 repeat protein [G 99.3 1.5E-09 3.3E-14 106.0 25.4 223 147-389 65-319 (1189)
268 KOG1064 RAVE (regulator of V-A 99.3 1.4E-11 3.1E-16 130.8 12.3 245 223-493 2179-2439(2439)
269 KOG0280 Uncharacterized conser 99.3 1.2E-09 2.6E-14 96.1 20.5 233 255-497 71-330 (339)
270 COG5354 Uncharacterized protei 99.2 3.3E-09 7.2E-14 100.0 22.9 264 211-487 31-332 (561)
271 KOG4190 Uncharacterized conser 99.2 2E-11 4.4E-16 115.5 8.0 208 246-496 728-943 (1034)
272 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.2E-07 4.8E-12 88.0 34.7 244 234-500 27-330 (352)
273 PLN02919 haloacid dehalogenase 99.2 2.7E-08 5.8E-13 108.7 32.2 266 157-463 571-892 (1057)
274 KOG1409 Uncharacterized conser 99.2 1.5E-09 3.2E-14 97.5 17.9 238 210-459 22-270 (404)
275 COG2706 3-carboxymuconate cycl 99.2 2.6E-07 5.5E-12 84.4 32.0 259 233-499 15-320 (346)
276 KOG4190 Uncharacterized conser 99.2 1.5E-10 3.1E-15 109.8 11.7 290 146-497 728-1033(1034)
277 COG5170 CDC55 Serine/threonine 99.2 1.7E-09 3.7E-14 95.7 17.0 267 212-497 26-364 (460)
278 PRK04043 tolB translocation pr 99.1 5.8E-08 1.3E-12 95.7 26.7 202 234-491 169-388 (419)
279 COG4946 Uncharacterized protei 99.1 6.2E-08 1.3E-12 90.8 24.6 214 261-489 274-507 (668)
280 KOG0882 Cyclophilin-related pe 99.1 4.4E-09 9.6E-14 97.7 16.8 268 219-497 15-369 (558)
281 COG2706 3-carboxymuconate cycl 99.1 2.1E-06 4.6E-11 78.5 32.8 267 151-479 37-345 (346)
282 TIGR03300 assembly_YfgL outer 99.1 1.4E-07 3E-12 92.9 27.3 259 224-500 65-338 (377)
283 KOG0309 Conserved WD40 repeat- 99.1 1.8E-09 3.8E-14 106.0 13.2 292 153-460 24-340 (1081)
284 PF08450 SGL: SMP-30/Gluconola 99.1 1.9E-06 4.1E-11 79.3 32.8 221 217-489 4-244 (246)
285 PF15492 Nbas_N: Neuroblastoma 99.0 3.2E-07 6.9E-12 81.3 25.1 235 159-469 3-269 (282)
286 PRK04043 tolB translocation pr 99.0 3.1E-07 6.8E-12 90.6 26.8 193 214-461 189-402 (419)
287 KOG1912 WD40 repeat protein [G 99.0 2.3E-07 5E-12 92.0 24.9 329 153-500 15-551 (1062)
288 KOG1832 HIV-1 Vpr-binding prot 99.0 7.3E-10 1.6E-14 110.6 6.8 263 146-488 1094-1377(1516)
289 KOG1920 IkappaB kinase complex 99.0 9E-07 2E-11 92.4 28.9 272 213-499 69-364 (1265)
290 KOG3914 WD repeat protein WDR4 99.0 1.1E-08 2.4E-13 94.0 13.2 166 157-375 66-232 (390)
291 KOG4532 WD40-like repeat conta 98.9 2.8E-07 6.1E-12 80.4 20.4 214 265-489 84-321 (344)
292 PRK11138 outer membrane biogen 98.9 6.3E-06 1.4E-10 81.5 32.3 305 165-499 69-393 (394)
293 COG5170 CDC55 Serine/threonine 98.9 5.2E-08 1.1E-12 86.5 14.6 278 153-457 26-365 (460)
294 KOG3914 WD repeat protein WDR4 98.9 5.1E-08 1.1E-12 89.7 14.9 87 330-426 145-232 (390)
295 PF13360 PQQ_2: PQQ-like domai 98.9 2.2E-06 4.8E-11 78.4 26.2 216 233-466 2-237 (238)
296 PF00400 WD40: WD domain, G-be 98.9 6E-09 1.3E-13 65.3 5.4 37 145-181 3-39 (39)
297 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.4E-13 64.0 6.4 39 419-457 1-39 (39)
298 COG4946 Uncharacterized protei 98.8 1.2E-05 2.6E-10 75.9 27.2 143 212-355 359-507 (668)
299 KOG0309 Conserved WD40 repeat- 98.8 6.7E-08 1.5E-12 95.2 13.0 277 212-499 24-338 (1081)
300 PF15492 Nbas_N: Neuroblastoma 98.8 4E-06 8.8E-11 74.4 21.8 189 156-376 46-269 (282)
301 KOG2695 WD40 repeat protein [G 98.7 3.4E-08 7.4E-13 88.9 8.5 158 313-480 231-402 (425)
302 KOG2695 WD40 repeat protein [G 98.7 5.1E-08 1.1E-12 87.8 9.5 157 219-377 218-387 (425)
303 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.4E-10 73.8 25.0 211 274-500 2-230 (238)
304 KOG1275 PAB-dependent poly(A) 98.7 3.6E-07 7.9E-12 92.3 15.8 183 264-458 146-341 (1118)
305 KOG4532 WD40-like repeat conta 98.7 4.1E-06 8.9E-11 73.3 20.2 229 223-459 83-331 (344)
306 KOG4714 Nucleoporin [Nuclear s 98.7 2.3E-07 5E-12 80.5 12.5 165 147-367 83-255 (319)
307 KOG3621 WD40 repeat-containing 98.6 1.1E-05 2.3E-10 80.0 22.4 150 152-317 32-192 (726)
308 PF07433 DUF1513: Protein of u 98.6 0.00017 3.7E-09 66.3 28.0 243 156-449 7-276 (305)
309 KOG2066 Vacuolar assembly/sort 98.6 1.2E-05 2.7E-10 80.6 20.8 180 215-461 42-235 (846)
310 KOG1912 WD40 repeat protein [G 98.6 1.8E-05 4E-10 79.0 21.8 233 256-498 18-302 (1062)
311 KOG1645 RING-finger-containing 98.6 1E-05 2.2E-10 74.9 18.7 243 210-459 191-461 (463)
312 KOG4714 Nucleoporin [Nuclear s 98.5 5.5E-06 1.2E-10 72.2 15.5 163 248-418 84-255 (319)
313 KOG1920 IkappaB kinase complex 98.5 0.00011 2.4E-09 77.4 27.1 196 154-368 69-324 (1265)
314 KOG3617 WD40 and TPR repeat-co 98.5 1.1E-05 2.5E-10 81.1 18.4 106 159-283 21-131 (1416)
315 KOG2066 Vacuolar assembly/sort 98.5 1E-05 2.2E-10 81.3 18.0 176 306-500 49-233 (846)
316 PF08450 SGL: SMP-30/Gluconola 98.5 0.00057 1.2E-08 62.8 28.9 205 158-387 4-233 (246)
317 KOG1275 PAB-dependent poly(A) 98.5 4.5E-06 9.9E-11 84.7 15.3 178 307-498 148-340 (1118)
318 PRK02888 nitrous-oxide reducta 98.5 5.5E-05 1.2E-09 75.8 22.7 172 316-500 215-404 (635)
319 PRK11138 outer membrane biogen 98.4 8.9E-05 1.9E-09 73.3 24.0 258 224-499 69-352 (394)
320 KOG0882 Cyclophilin-related pe 98.4 1.8E-06 3.9E-11 80.7 10.8 200 294-500 8-231 (558)
321 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00056 1.2E-08 66.5 28.9 288 162-489 1-346 (353)
322 KOG1645 RING-finger-containing 98.4 1.4E-05 3.1E-10 73.9 15.8 241 248-499 188-460 (463)
323 KOG2114 Vacuolar assembly/sort 98.4 0.00012 2.5E-09 74.4 23.4 212 219-468 30-252 (933)
324 PF07433 DUF1513: Protein of u 98.4 0.0011 2.5E-08 60.9 27.4 227 257-489 8-275 (305)
325 cd00216 PQQ_DH Dehydrogenases 98.3 0.00041 8.8E-09 70.5 25.9 271 225-500 62-424 (488)
326 cd00216 PQQ_DH Dehydrogenases 98.3 0.0029 6.4E-08 64.3 32.0 295 165-486 61-453 (488)
327 KOG1832 HIV-1 Vpr-binding prot 98.3 1.2E-06 2.7E-11 88.2 5.7 157 327-500 1092-1255(1516)
328 KOG2114 Vacuolar assembly/sort 98.2 0.00033 7.2E-09 71.3 21.1 188 147-339 58-259 (933)
329 COG0823 TolB Periplasmic compo 98.1 0.00062 1.3E-08 67.1 21.4 140 341-490 242-389 (425)
330 PF14583 Pectate_lyase22: Olig 98.1 0.0077 1.7E-07 57.3 27.6 271 219-499 42-380 (386)
331 PRK02888 nitrous-oxide reducta 98.1 0.00053 1.2E-08 69.0 20.7 132 345-488 285-449 (635)
332 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.019 4.2E-07 58.7 33.7 76 409-485 441-518 (527)
333 PF11768 DUF3312: Protein of u 98.0 2.7E-05 5.9E-10 76.1 10.0 71 428-499 258-328 (545)
334 COG0823 TolB Periplasmic compo 98.0 0.00021 4.6E-09 70.3 16.4 146 336-491 192-346 (425)
335 PF04053 Coatomer_WDAD: Coatom 98.0 0.0046 9.9E-08 61.3 25.0 213 254-499 33-261 (443)
336 PF04841 Vps16_N: Vps16, N-ter 98.0 0.02 4.4E-07 56.6 29.1 188 235-440 62-270 (410)
337 PF06433 Me-amine-dh_H: Methyl 97.9 0.0057 1.2E-07 57.1 22.7 252 217-471 40-332 (342)
338 PF04053 Coatomer_WDAD: Coatom 97.9 0.00038 8.3E-09 68.8 15.7 142 335-499 31-172 (443)
339 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.029 6.3E-07 54.7 28.4 90 337-426 308-407 (415)
340 PF04841 Vps16_N: Vps16, N-ter 97.9 0.017 3.8E-07 57.1 26.1 198 276-481 62-270 (410)
341 PF00780 CNH: CNH domain; Int 97.9 0.026 5.5E-07 52.8 26.5 227 222-471 5-267 (275)
342 KOG1008 Uncharacterized conser 97.8 7.4E-06 1.6E-10 80.2 1.9 201 212-459 56-275 (783)
343 PF11768 DUF3312: Protein of u 97.8 0.00011 2.5E-09 71.9 9.6 75 211-286 258-332 (545)
344 smart00320 WD40 WD40 repeats. 97.8 5.3E-05 1.1E-09 46.2 4.9 36 146-181 5-40 (40)
345 KOG3621 WD40 repeat-containing 97.8 0.00064 1.4E-08 67.8 14.0 119 214-367 35-155 (726)
346 COG3391 Uncharacterized conser 97.7 0.054 1.2E-06 53.2 30.4 232 257-499 34-282 (381)
347 KOG4640 Anaphase-promoting com 97.7 0.00018 3.8E-09 70.8 9.6 93 378-480 20-115 (665)
348 smart00320 WD40 WD40 repeats. 97.7 0.00012 2.6E-09 44.5 5.9 38 420-457 3-40 (40)
349 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.027 5.9E-07 54.7 25.1 285 141-446 30-344 (353)
350 COG3386 Gluconolactonase [Carb 97.7 0.036 7.9E-07 52.1 24.5 146 337-491 111-276 (307)
351 KOG3617 WD40 and TPR repeat-co 97.7 0.00026 5.6E-09 71.8 10.4 144 339-498 62-218 (1416)
352 PF08596 Lgl_C: Lethal giant l 97.7 0.018 3.9E-07 56.3 22.9 269 214-491 3-327 (395)
353 KOG4640 Anaphase-promoting com 97.7 0.00019 4.1E-09 70.6 8.5 70 430-500 21-92 (665)
354 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.038 8.3E-07 49.0 21.2 189 266-473 24-220 (354)
355 PF06433 Me-amine-dh_H: Methyl 97.6 0.065 1.4E-06 50.2 24.4 252 235-500 18-320 (342)
356 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.051 1.1E-06 48.2 28.8 68 224-292 63-132 (354)
357 PF03178 CPSF_A: CPSF A subuni 97.6 0.033 7.1E-07 53.4 22.8 208 276-497 3-262 (321)
358 PF08596 Lgl_C: Lethal giant l 97.5 0.024 5.2E-07 55.4 21.4 220 155-375 3-299 (395)
359 PRK13616 lipoprotein LpqB; Pro 97.5 0.0051 1.1E-07 63.4 17.4 156 336-499 349-524 (591)
360 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.017 3.7E-07 44.5 15.8 91 400-496 16-110 (111)
361 PF08553 VID27: VID27 cytoplas 97.5 0.0044 9.6E-08 64.9 16.7 144 349-499 494-646 (794)
362 KOG1008 Uncharacterized conser 97.5 3.3E-05 7.2E-10 75.7 1.2 182 307-500 71-275 (783)
363 KOG2395 Protein involved in va 97.5 0.0032 6.9E-08 61.1 14.2 140 306-458 346-499 (644)
364 PF08553 VID27: VID27 cytoplas 97.5 0.0034 7.3E-08 65.7 15.5 137 311-458 499-646 (794)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.14 3.1E-06 52.4 26.7 229 266-500 121-490 (527)
366 PF06977 SdiA-regulated: SdiA- 97.4 0.09 1.9E-06 47.8 25.4 198 248-456 16-247 (248)
367 PF02897 Peptidase_S9_N: Proly 97.3 0.2 4.3E-06 50.0 31.3 242 154-421 124-408 (414)
368 KOG2079 Vacuolar assembly/sort 97.3 0.0084 1.8E-07 63.1 15.9 76 224-299 99-176 (1206)
369 COG3386 Gluconolactonase [Carb 97.3 0.15 3.2E-06 48.1 24.7 215 220-445 32-271 (307)
370 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.02 4.4E-07 44.1 14.2 100 156-278 2-109 (111)
371 COG3391 Uncharacterized conser 97.3 0.2 4.2E-06 49.3 30.5 217 257-482 77-310 (381)
372 KOG2444 WD40 repeat protein [G 97.3 0.0013 2.8E-08 56.9 8.0 105 348-460 70-178 (238)
373 PF06977 SdiA-regulated: SdiA- 97.2 0.079 1.7E-06 48.1 19.3 195 148-361 16-245 (248)
374 KOG2395 Protein involved in va 97.2 0.011 2.5E-07 57.4 13.9 143 351-499 349-499 (644)
375 PRK13616 lipoprotein LpqB; Pro 97.0 0.19 4.2E-06 52.0 22.4 191 213-451 350-560 (591)
376 KOG2079 Vacuolar assembly/sort 96.9 0.0043 9.4E-08 65.1 9.0 93 401-493 101-198 (1206)
377 KOG4441 Proteins containing BT 96.9 0.26 5.5E-06 51.1 21.7 222 223-460 284-547 (571)
378 KOG1897 Damage-specific DNA bi 96.8 0.87 1.9E-05 48.3 32.5 321 153-500 530-898 (1096)
379 PF00780 CNH: CNH domain; Int 96.8 0.43 9.3E-06 44.5 27.0 225 164-428 6-266 (275)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.2 4.3E-06 49.1 18.9 46 425-470 303-348 (415)
381 PF10647 Gmad1: Lipoprotein Lp 96.8 0.19 4E-06 46.2 18.1 144 338-493 25-188 (253)
382 PHA02713 hypothetical protein; 96.7 0.28 6.2E-06 50.7 20.7 184 264-462 303-536 (557)
383 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0076 1.6E-07 38.7 5.4 34 429-463 11-44 (47)
384 PF03178 CPSF_A: CPSF A subuni 96.6 0.75 1.6E-05 44.0 24.8 139 224-366 42-202 (321)
385 PRK13684 Ycf48-like protein; P 96.5 0.8 1.7E-05 44.1 29.6 148 336-497 172-328 (334)
386 PHA02713 hypothetical protein; 96.5 0.24 5.1E-06 51.3 18.8 209 276-500 273-533 (557)
387 KOG4499 Ca2+-binding protein R 96.5 0.13 2.8E-06 45.0 13.5 136 219-387 115-262 (310)
388 KOG1916 Nuclear protein, conta 96.4 0.0012 2.5E-08 67.8 1.4 124 147-282 126-264 (1283)
389 PF05096 Glu_cyclase_2: Glutam 96.4 0.69 1.5E-05 42.0 22.9 179 256-447 47-249 (264)
390 PF02897 Peptidase_S9_N: Proly 96.4 1.2 2.6E-05 44.4 28.7 237 215-464 126-409 (414)
391 PF14870 PSII_BNR: Photosynthe 96.4 0.9 2E-05 42.6 30.0 267 212-497 16-301 (302)
392 PF12894 Apc4_WD40: Anaphase-p 96.4 0.013 2.8E-07 37.7 5.3 31 336-366 11-41 (47)
393 TIGR02604 Piru_Ver_Nterm putat 96.3 0.28 6E-06 48.0 17.3 144 338-492 15-205 (367)
394 TIGR03074 PQQ_membr_DH membran 96.3 1.4 2.9E-05 47.2 23.0 201 265-467 194-485 (764)
395 PF15390 DUF4613: Domain of un 96.1 0.3 6.4E-06 48.8 15.5 148 337-498 20-184 (671)
396 KOG4441 Proteins containing BT 96.0 0.66 1.4E-05 48.0 18.7 183 265-463 285-503 (571)
397 PF12234 Rav1p_C: RAVE protein 96.0 0.24 5.2E-06 50.9 14.9 92 405-498 47-154 (631)
398 PF05096 Glu_cyclase_2: Glutam 95.6 1.8 3.9E-05 39.4 22.0 179 156-354 47-249 (264)
399 KOG2444 WD40 repeat protein [G 95.4 0.06 1.3E-06 47.0 6.9 102 265-366 70-177 (238)
400 KOG1916 Nuclear protein, conta 95.2 0.019 4.1E-07 59.3 3.9 113 344-459 243-374 (1283)
401 COG3490 Uncharacterized protei 95.1 2.6 5.6E-05 38.4 20.7 153 219-373 120-317 (366)
402 KOG3630 Nuclear pore complex, 94.9 0.6 1.3E-05 50.2 13.6 141 338-487 102-260 (1405)
403 PF14870 PSII_BNR: Photosynthe 94.8 3.5 7.7E-05 38.7 27.5 109 376-495 142-256 (302)
404 PF07995 GSDH: Glucose / Sorbo 94.7 4.4 9.5E-05 38.9 27.8 72 423-495 247-330 (331)
405 PHA03098 kelch-like protein; P 94.5 2.2 4.8E-05 44.1 17.3 93 276-370 312-418 (534)
406 PF10168 Nup88: Nuclear pore c 94.4 8.3 0.00018 41.1 22.6 91 255-367 86-180 (717)
407 PF07995 GSDH: Glucose / Sorbo 94.3 5.2 0.00011 38.4 27.0 54 401-454 273-330 (331)
408 PF10313 DUF2415: Uncharacteri 94.3 0.18 3.9E-06 31.4 5.1 31 430-460 1-34 (43)
409 TIGR03074 PQQ_membr_DH membran 94.0 10 0.00023 40.7 23.2 151 348-500 260-477 (764)
410 KOG3630 Nuclear pore complex, 94.0 0.31 6.6E-06 52.3 9.2 152 154-312 101-260 (1405)
411 COG5167 VID27 Protein involved 94.0 2.9 6.3E-05 41.2 15.0 148 347-500 478-632 (776)
412 TIGR02604 Piru_Ver_Nterm putat 93.7 4.5 9.8E-05 39.5 16.7 101 338-449 73-203 (367)
413 PF07569 Hira: TUP1-like enhan 93.5 0.52 1.1E-05 42.1 8.9 64 437-501 18-96 (219)
414 PF10647 Gmad1: Lipoprotein Lp 93.5 6 0.00013 36.3 21.2 139 213-391 24-178 (253)
415 PF15390 DUF4613: Domain of un 93.5 2.6 5.6E-05 42.4 14.1 148 213-366 20-186 (671)
416 PF14727 PHTB1_N: PTHB1 N-term 93.3 9 0.0002 37.8 32.1 263 223-496 36-356 (418)
417 COG3490 Uncharacterized protei 93.2 6.7 0.00015 35.9 17.1 141 341-489 72-244 (366)
418 PHA03098 kelch-like protein; P 93.1 4.8 0.0001 41.7 16.6 59 440-500 437-511 (534)
419 PHA02790 Kelch-like protein; P 92.8 8.2 0.00018 39.3 17.4 103 266-370 273-388 (480)
420 PF14583 Pectate_lyase22: Olig 92.8 10 0.00022 36.8 29.4 106 342-458 243-380 (386)
421 KOG2280 Vacuolar assembly/sort 92.7 14 0.00031 38.5 18.6 52 232-284 62-113 (829)
422 KOG2377 Uncharacterized conser 92.7 3 6.5E-05 40.5 12.7 132 222-354 31-171 (657)
423 PF10168 Nup88: Nuclear pore c 92.6 16 0.00035 38.9 21.0 73 212-284 84-180 (717)
424 PF05694 SBP56: 56kDa selenium 92.5 12 0.00025 36.8 19.9 181 311-500 93-342 (461)
425 KOG4499 Ca2+-binding protein R 92.4 7.6 0.00016 34.5 21.2 135 337-481 109-264 (310)
426 COG5167 VID27 Protein involved 92.3 2 4.2E-05 42.4 11.2 142 307-458 481-631 (776)
427 KOG2377 Uncharacterized conser 92.3 5.8 0.00013 38.7 14.1 118 333-461 63-187 (657)
428 KOG1897 Damage-specific DNA bi 92.2 19 0.00042 38.8 32.1 311 156-497 586-939 (1096)
429 COG3204 Uncharacterized protei 92.1 9.7 0.00021 35.1 19.0 158 151-326 83-265 (316)
430 TIGR03118 PEPCTERM_chp_1 conse 92.1 10 0.00022 35.2 24.7 223 213-439 23-307 (336)
431 PF12234 Rav1p_C: RAVE protein 92.0 5.3 0.00011 41.5 14.6 109 341-458 34-155 (631)
432 PF08728 CRT10: CRT10; InterP 91.9 12 0.00027 39.3 17.2 99 400-499 115-245 (717)
433 PF10313 DUF2415: Uncharacteri 91.7 0.65 1.4E-05 29.0 4.8 30 471-500 1-33 (43)
434 KOG2280 Vacuolar assembly/sort 91.6 14 0.0003 38.6 16.6 187 273-468 62-255 (829)
435 TIGR02276 beta_rpt_yvtn 40-res 91.5 1.2 2.6E-05 27.5 6.3 41 439-479 1-42 (42)
436 KOG4460 Nuclear pore complex, 91.2 11 0.00024 37.5 15.0 94 338-462 105-201 (741)
437 PF14781 BBS2_N: Ciliary BBSom 91.2 6.8 0.00015 31.5 13.2 120 342-468 4-134 (136)
438 KOG2247 WD40 repeat-containing 90.9 0.042 9.1E-07 53.2 -1.4 132 257-390 38-171 (615)
439 KOG4460 Nuclear pore complex, 90.6 6.1 0.00013 39.3 12.6 94 255-369 105-201 (741)
440 PRK10115 protease 2; Provision 90.6 27 0.00059 37.4 34.3 192 154-365 127-343 (686)
441 PF05694 SBP56: 56kDa selenium 90.5 19 0.00041 35.5 24.4 219 264-488 86-391 (461)
442 PF12657 TFIIIC_delta: Transcr 90.4 1.5 3.3E-05 37.6 7.9 27 472-498 87-119 (173)
443 COG3823 Glutamine cyclotransfe 90.2 12 0.00025 32.7 12.6 172 164-354 55-247 (262)
444 PF08728 CRT10: CRT10; InterP 90.2 19 0.0004 38.0 16.5 109 304-416 112-245 (717)
445 PF12657 TFIIIC_delta: Transcr 90.1 2.7 5.9E-05 36.0 9.2 36 380-418 87-122 (173)
446 COG3204 Uncharacterized protei 89.9 16 0.00035 33.7 21.3 117 250-366 82-210 (316)
447 TIGR03118 PEPCTERM_chp_1 conse 89.5 18 0.00039 33.7 26.4 226 156-388 25-307 (336)
448 PHA02790 Kelch-like protein; P 89.5 26 0.00057 35.6 17.6 102 264-370 318-427 (480)
449 PF14761 HPS3_N: Hermansky-Pud 89.1 2.7 6E-05 36.8 8.3 59 442-500 29-96 (215)
450 PF14269 Arylsulfotran_2: Aryl 88.8 4.7 0.0001 38.0 10.4 67 432-498 146-218 (299)
451 PF05935 Arylsulfotrans: Aryls 87.9 34 0.00073 34.8 19.2 116 342-470 153-312 (477)
452 COG5290 IkappaB kinase complex 87.2 18 0.00038 38.1 13.7 124 152-275 111-268 (1243)
453 PF03088 Str_synth: Strictosid 87.1 7.2 0.00016 29.1 8.4 48 447-494 33-81 (89)
454 PF14727 PHTB1_N: PTHB1 N-term 87.0 34 0.00073 33.9 31.7 59 400-460 301-361 (418)
455 PRK13684 Ycf48-like protein; P 86.9 30 0.00066 33.2 29.1 174 271-457 148-329 (334)
456 PF07676 PD40: WD40-like Beta 86.8 2.5 5.4E-05 25.6 5.0 28 470-497 8-38 (39)
457 PF07569 Hira: TUP1-like enhan 86.3 7.9 0.00017 34.6 9.9 70 220-290 18-102 (219)
458 PF07676 PD40: WD40-like Beta 85.7 4.6 0.0001 24.4 5.9 29 428-456 7-38 (39)
459 TIGR03606 non_repeat_PQQ dehyd 85.7 42 0.0009 33.7 20.6 112 336-450 29-166 (454)
460 KOG3616 Selective LIM binding 84.3 59 0.0013 34.2 17.8 30 155-184 16-45 (1636)
461 PRK10115 protease 2; Provision 83.9 66 0.0014 34.5 33.6 235 214-462 128-397 (686)
462 COG3823 Glutamine cyclotransfe 83.5 30 0.00065 30.3 14.2 171 264-447 55-247 (262)
463 PF07250 Glyoxal_oxid_N: Glyox 83.5 20 0.00044 32.5 11.2 126 340-469 70-207 (243)
464 KOG1983 Tomosyn and related SN 83.3 60 0.0013 36.4 16.7 30 214-243 37-66 (993)
465 PF11715 Nup160: Nucleoporin N 82.6 6.8 0.00015 40.7 9.1 72 222-293 156-258 (547)
466 KOG1898 Splicing factor 3b, su 82.6 82 0.0018 34.6 22.9 32 153-184 582-619 (1205)
467 PF03022 MRJP: Major royal jel 82.2 44 0.00096 31.3 20.0 162 276-447 35-253 (287)
468 KOG3616 Selective LIM binding 81.9 28 0.0006 36.4 12.4 75 214-291 16-90 (1636)
469 PF11715 Nup160: Nucleoporin N 81.0 7.2 0.00016 40.5 8.6 37 431-467 216-256 (547)
470 TIGR02276 beta_rpt_yvtn 40-res 80.9 10 0.00022 23.1 6.4 38 399-437 4-41 (42)
471 PLN00033 photosystem II stabil 80.7 62 0.0013 32.0 32.3 145 339-497 241-396 (398)
472 PF10214 Rrn6: RNA polymerase 80.5 93 0.002 33.9 21.5 28 338-365 147-175 (765)
473 COG1520 FOG: WD40-like repeat 79.4 65 0.0014 31.4 21.8 191 267-469 70-278 (370)
474 PF13449 Phytase-like: Esteras 78.9 62 0.0014 31.0 19.7 142 337-488 20-232 (326)
475 COG1506 DAP2 Dipeptidyl aminop 78.2 95 0.0021 32.9 15.9 156 316-491 43-236 (620)
476 PF05935 Arylsulfotrans: Aryls 76.9 91 0.002 31.8 14.9 150 223-375 114-310 (477)
477 smart00564 PQQ beta-propeller 76.5 6.3 0.00014 22.6 3.9 25 443-467 8-32 (33)
478 COG4590 ABC-type uncharacteriz 75.4 24 0.00051 34.7 9.2 156 212-370 220-390 (733)
479 PRK13613 lipoprotein LpqB; Pro 75.3 1.1E+02 0.0024 32.1 18.2 156 332-498 357-535 (599)
480 KOG1900 Nuclear pore complex, 75.1 51 0.0011 37.0 12.6 143 354-500 95-272 (1311)
481 COG5290 IkappaB kinase complex 73.5 1.3E+02 0.0029 32.1 15.0 30 252-281 111-140 (1243)
482 PF14781 BBS2_N: Ciliary BBSom 73.0 48 0.001 26.8 13.9 118 158-286 3-128 (136)
483 PF01436 NHL: NHL repeat; Int 72.9 9.1 0.0002 21.3 3.7 25 473-497 4-28 (28)
484 PF08801 Nucleoporin_N: Nup133 72.7 99 0.0021 30.8 13.8 29 472-500 191-219 (422)
485 PF12768 Rax2: Cortical protei 71.7 52 0.0011 30.7 10.5 86 409-494 16-115 (281)
486 PF01011 PQQ: PQQ enzyme repea 71.3 10 0.00022 22.8 4.0 28 443-470 2-29 (38)
487 KOG2247 WD40 repeat-containing 70.3 0.52 1.1E-05 46.0 -2.9 135 339-485 37-174 (615)
488 PF02333 Phytase: Phytase; In 69.5 1.2E+02 0.0025 29.7 19.9 191 163-367 66-291 (381)
489 PF14269 Arylsulfotran_2: Aryl 68.8 1.1E+02 0.0023 29.0 22.7 71 338-417 145-220 (299)
490 KOG1900 Nuclear pore complex, 68.6 77 0.0017 35.7 12.2 136 313-460 96-273 (1311)
491 PF01731 Arylesterase: Arylest 66.6 38 0.00082 25.0 6.9 31 430-460 54-85 (86)
492 smart00564 PQQ beta-propeller 66.1 16 0.00034 20.8 4.0 25 401-425 8-32 (33)
493 PF13449 Phytase-like: Esteras 66.0 1.3E+02 0.0027 28.9 19.4 118 152-273 18-166 (326)
494 PF07250 Glyoxal_oxid_N: Glyox 65.5 19 0.00041 32.7 6.1 81 411-491 48-138 (243)
495 PF12341 DUF3639: Protein of u 65.0 19 0.00041 20.0 3.7 25 431-457 3-27 (27)
496 KOG3522 Predicted guanine nucl 64.0 22 0.00048 37.7 6.9 134 349-491 548-689 (925)
497 COG1520 FOG: WD40-like repeat 63.2 1.5E+02 0.0033 28.8 28.2 159 264-428 111-279 (370)
498 PF12768 Rax2: Cortical protei 63.1 1.3E+02 0.0029 28.0 13.3 132 274-406 15-169 (281)
499 KOG1983 Tomosyn and related SN 62.7 2.7E+02 0.0058 31.5 21.1 28 155-182 37-64 (993)
500 PF01011 PQQ: PQQ enzyme repea 60.7 24 0.00052 21.2 4.2 26 402-427 3-28 (38)
No 1
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-66 Score=469.32 Aligned_cols=356 Identities=65% Similarity=1.124 Sum_probs=330.7
Q ss_pred cccCCCceEEccCCccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeec---cccccCCCC
Q 010777 139 FEIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKD 214 (501)
Q Consensus 139 ~~~~~~~~~~l~~H~~~V~~~~~sp~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 214 (501)
..||+..+..++ |..+|++++|+|-.. +|++|+.|.+.++|++.........+ ..+++.. +.....++.
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q------~~lrh~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ------LVLRHCIREGGKSVPSNKD 237 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh------hhhhhhhhhhcccCCccCC
Confidence 458888888888 999999999999755 99999999999999987521111111 1122222 333455689
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 215 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 215 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
|++++|+.+|.+|++|+.||.++||+..+.+..++..|++||++|+|+..|+||++++.|+++.+||..++++.++|.+|
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec
Q 010777 295 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 374 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 374 (501)
..+..+++|.++..|++++.|+.|+||.+....|+.+|.||.++|+++.|+|.|.+|+|||.|++++||.+......+.|
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l 397 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL 397 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010777 375 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 375 ~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
++|...|+++.|+|.|....+|+....+++++.|++|++||+..+.+++++..|..+|++|+|||+|+|||+|+.||.|+
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEeeC
Q 010777 455 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 501 (501)
Q Consensus 455 iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~~ 501 (501)
+|+.+++++++.+.+.+.|+.++|+.+|++|.+|..|+.++|.|||+
T Consensus 478 iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLRK 524 (524)
T ss_pred eccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence 99999999999999999999999999999999999999999999986
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-59 Score=411.64 Aligned_cols=327 Identities=31% Similarity=0.540 Sum_probs=297.9
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
...+.||..+|-|++|+|+|..|+|||.|.++|+||+.+... +..+++ |..-|.|++|+|||+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------------~~t~Kg----H~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------------LFTCKG----HKNWVLCVAWSPDGK 170 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------------ceeecC----CccEEEEEEECCCcc
Confidence 346789999999999999999999999999999999987542 223333 467899999999999
Q ss_pred EEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEecC-----CCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe
Q 010777 226 LLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 298 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~--~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 298 (501)
.|++|+.||.|++||.. +.....+.+|+..|++|+|.| ...+|+++|.||+|+|||+..+.++..+..|..+|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 99999999999999964 345568999999999999976 45789999999999999999999999999999999
Q ss_pred EEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEc-----------CCCC------------------
Q 010777 299 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----------PTGS------------------ 349 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-----------~~~~------------------ 349 (501)
.++.|-....+.+++.|++|++|+...++.+..+.||...|+.++++ |.++
T Consensus 251 TCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 251 TCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876 3343
Q ss_pred -------EEEEEeCCCeEEEEeCC-CCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 010777 350 -------LLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 421 (501)
Q Consensus 350 -------~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 421 (501)
.+++|++|+++.+|+.. ..+++..+.+|...|..+.|+|++. ++|++|+|..|++|+.++|+.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r---------~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR---------YIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc---------EEEEeecccceeeeeCCCcch
Confidence 49999999999999865 4457888999999999999999997 899999999999999999999
Q ss_pred EEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 422 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 422 ~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
+.+++||-.+|+.++||.|.++|++||.|.+++||++++.++..-++++. .|+++.|+|||..+|+|+.|+.+++|-
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999998765 599999999999999999999999983
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-51 Score=362.90 Aligned_cols=288 Identities=32% Similarity=0.578 Sum_probs=257.8
Q ss_pred CceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-
Q 010777 144 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 222 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~- 222 (501)
.+.++.+||...|.|++|+|||+.||||+.||+|++||..++..... ...+|.+.|++++|.|
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~----------------~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR----------------ALRGHKKWITALAWEPL 211 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc----------------cccCcccceeEEeeccc
Confidence 45678999999999999999999999999999999999888764332 2345688999999975
Q ss_pred ----CCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCC
Q 010777 223 ----EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 297 (501)
Q Consensus 223 ----~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 297 (501)
.+++|++++.||.|+|||+.. .....+.+|+.+|+|++|--+| +|++||.|++|++|+...+.+.+.+..|..-
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw 290 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW 290 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence 678999999999999999875 5667889999999999997654 8999999999999999998888888888766
Q ss_pred eEEEecC-------------CC------------------------ceEEEecCCCeEEEEEcCCC-cceeeecCCCCce
Q 010777 298 TLDVDWR-------------NN------------------------VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEV 339 (501)
Q Consensus 298 ~~~~~~~-------------~~------------------------~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v 339 (501)
++.++.. .. .+++++++|.++++|+-... +|+..+.||...|
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 6554432 11 25899999999999987654 5888899999999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 010777 340 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 419 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 419 (501)
+.+.||||+++||++|.|..|++|+.++++++.+|++|-..|+.++|+.+.. +|++||.|.++++|++++.
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR---------LlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR---------LLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc---------EEEEcCCCceEEEEEeeee
Confidence 9999999999999999999999999999999999999999999999999986 8999999999999999999
Q ss_pred eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 420 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 420 ~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
++.+.+.||...|.++.|+|||+.+++|+.|..+++|.
T Consensus 442 Kl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-49 Score=357.15 Aligned_cols=282 Identities=26% Similarity=0.480 Sum_probs=257.2
Q ss_pred cCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC--CCEE
Q 010777 150 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLL 227 (501)
Q Consensus 150 ~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~--~~~l 227 (501)
.|-+.+|..|.||+|+..|||||.+|.+++|...+.. .+..+. +|...|.++.|+|. +.-+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------~~~~l~----gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------LLQTLR----GHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------eeEEEe----ccccceeeEEEccCCCccce
Confidence 4667899999999999999999999999999976532 122233 45778999999997 6789
Q ss_pred EEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC
Q 010777 228 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 306 (501)
Q Consensus 228 ~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (501)
+||+.||++++|++++ .....+.+|...|..++|||+|++|.|++.|.+.++||++++..
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E------------------- 295 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE------------------- 295 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-------------------
Confidence 9999999999999987 56678999999999999999999999999999999999987642
Q ss_pred ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEE
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 386 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 386 (501)
+....||...|.+++|+|||.+++||+.|..-||||+++++++..+.+|..+|+++.|
T Consensus 296 ----------------------lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 296 ----------------------LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF 353 (459)
T ss_pred ----------------------hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeE
Confidence 2234689999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeeEE
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVK 465 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-dg~~lasgs~Dg~i~iw~~~~~~~~~ 465 (501)
+|+|. .|||||.|++++|||++..+.++++.+|..-|+.|.|+| .|++|+|+|.|++++||...++.+++
T Consensus 354 sPNGy---------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k 424 (459)
T KOG0272|consen 354 SPNGY---------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK 424 (459)
T ss_pred CCCce---------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch
Confidence 99994 799999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred EEecCC-CEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 466 TYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 466 ~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
++.++. .|.+++.+++|..+++++.|.++++|.
T Consensus 425 sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 998865 599999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.6e-45 Score=312.21 Aligned_cols=285 Identities=26% Similarity=0.456 Sum_probs=256.3
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
.++|+||...|.++.|++|.++|+|+|.||.+.|||..+.... .. ..-.+..|..++|+|.|+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~----------ha-------ipl~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV----------HA-------IPLPSSWVMTCAYSPSGN 110 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce----------eE-------EecCceeEEEEEECCCCC
Confidence 3789999999999999999999999999999999997654211 00 111356799999999999
Q ss_pred EEEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe
Q 010777 226 LLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 298 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 298 (501)
++++|+.|+...||++.. .....+.+|++.+.++.|-++ .+|+|+|.|.++.+||+++++....|..|.+.|
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 999999999999999763 234568999999999999885 579999999999999999999999999999999
Q ss_pred EEEecCC--CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc
Q 010777 299 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 376 (501)
Q Consensus 299 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 376 (501)
.++++.+ ...|++++.|++.++||++.+..+++|.||...|++|+|+|+|.-|+||++|+++|+||++..+.+..+..
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 9998864 57899999999999999999999999999999999999999999999999999999999999887766543
Q ss_pred --CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010777 377 --HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 377 --~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
....|++++|+..|+ +|.+|..|.++.+||.-.++.+..+.+|...|++|..+|||.-|+|||+|.+|+
T Consensus 270 ~~~~~gitSv~FS~SGR---------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGR---------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred CcccCCceeEEEccccc---------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 345789999999997 788899999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 010777 455 IWS 457 (501)
Q Consensus 455 iw~ 457 (501)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-43 Score=304.02 Aligned_cols=289 Identities=27% Similarity=0.480 Sum_probs=247.0
Q ss_pred EEccCCccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 147 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
-+|++|++.|+.++..+. ...|++++.|.++.+|++...... .| ...+.+ .+|+.-|..++.++||+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----~G----~~~r~~----~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----YG----VPVRRL----TGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----cC----ceeeee----eccceEecceEEccCCc
Confidence 478999999999999998 468999999999999998753111 00 112223 34677899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 226 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
++++++.|+.+|+||+.+ ...+.|.+|+..|.+++|++++.++++||.|++|++||+.....
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck----------------- 139 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK----------------- 139 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-----------------
Confidence 999999999999999876 66778999999999999999999999999999999999765321
Q ss_pred CCceEEEecCCCeEEEEEcCCCcceeeec--CCCCceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceeeecccCCCC
Q 010777 305 NNVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 380 (501)
Q Consensus 305 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 380 (501)
.+.. ++.+.|+|+.|+|+ ..+|+++|.|+++++||+++.+..+.+.+|.+.
T Consensus 140 -------------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 140 -------------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY 194 (315)
T ss_pred -------------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc
Confidence 1111 23678999999998 689999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~ 460 (501)
++.+.++|+|+ +.++|+.||.+.+||++.++.++.+. |...|++++|+|+..+|+.+... .|+|||+.+
T Consensus 195 v~t~~vSpDGs---------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~ 263 (315)
T KOG0279|consen 195 VNTVTVSPDGS---------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLES 263 (315)
T ss_pred EEEEEECCCCC---------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccc
Confidence 99999999997 88999999999999999999998887 67899999999999888876644 599999999
Q ss_pred CeeEEEEecC----------CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 461 GKIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 461 ~~~~~~~~~~----------~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+.++..+..+ ....+++|++||..|.+|..|+.|+||.++
T Consensus 264 ~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 8877666321 125789999999999999999999999875
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-41 Score=313.71 Aligned_cols=354 Identities=24% Similarity=0.416 Sum_probs=273.8
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCC----C----------------------------
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ----N---------------------------- 193 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~----~---------------------------- 193 (501)
+..+..|...|+...|||.|-++|||...|+|||||......+.+.. .
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 45778899999999999999999999999999999975421110000 0
Q ss_pred -------------C---CceEEEE------------------------EeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 010777 194 -------------G---PLNVLVL------------------------KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 233 (501)
Q Consensus 194 -------------~---~~~~~~~------------------------~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 233 (501)
| .++...+ ..++.....|++-|.|+.|+|||.+|++++.|
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 0 0000000 11233345678899999999999999999999
Q ss_pred CeEEEEEC-CCceeEeec---CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccC---CeEEEecCCC
Q 010777 234 GQARIWST-NGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLDVDWRNN 306 (501)
Q Consensus 234 g~i~iw~~-~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~ 306 (501)
|.|.|||- .++....+. +|++.|++|+|+|++.+|+|+|.|++++|||+.+..+++++..... ....+-|. +
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-k 290 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-K 290 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-C
Confidence 99999995 456677776 8999999999999999999999999999999999999998876543 33455566 6
Q ss_pred ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee-----------eecc
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-----------HDLR 375 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~~~ 375 (501)
..+++.+.+|+|..++.....+++++.||...|+++..+|++++|.+|+.||.|.-|+..++..- ..+.
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 77889999999999999998999999999999999999999999999999999999998654321 1111
Q ss_pred cCC-CCEEEEEEc-------------------------------CCCC------------------------------CC
Q 010777 376 EHS-KEIYTIRWS-------------------------------PTGS------------------------------GT 393 (501)
Q Consensus 376 ~~~-~~v~~i~~~-------------------------------p~g~------------------------------~~ 393 (501)
.+. +.+.++.|. +++. ..
T Consensus 371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 111 122222111 1110 00
Q ss_pred CCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeE-EEEe-c
Q 010777 394 NNPNQQLILASASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYT-G 469 (501)
Q Consensus 394 ~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~-~~~~-~ 469 (501)
.+|. ...++.|+.||.|+||.+..+... ..+..|+++|++|+||||+.|||+|...+.+.+|++.+++.. ..+. +
T Consensus 451 v~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH 529 (603)
T KOG0318|consen 451 VSPD-GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH 529 (603)
T ss_pred EcCC-CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee
Confidence 0111 125788999999999999865532 345679999999999999999999999999999999988762 2233 3
Q ss_pred CCCEEEEEECCCCCEEEEEECCCeEEEEEeeC
Q 010777 470 NGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 501 (501)
Q Consensus 470 ~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~~ 501 (501)
...|.+++|+|+.+++|+|+.|-+|.||++.+
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 45699999999999999999999999999863
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=293.32 Aligned_cols=280 Identities=20% Similarity=0.373 Sum_probs=255.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCc---
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--- 285 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~--- 285 (501)
+|...|+++.|++|.++++|++.||.+.|||.-. .....+.-...-|..++|+|.|++++.|+.|..+.||++.+.
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~ 132 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE 132 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc
Confidence 3466799999999999999999999999999643 344455556677999999999999999999999999999865
Q ss_pred ---ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcC-CCCEEEEEeCCCeEE
Q 010777 286 ---EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAK 361 (501)
Q Consensus 286 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~i~ 361 (501)
...+.+..|.+-+.+..|.++..+++++.|.+..+||+.+++.+..|.||.+.|.+++++| +++.|++|+-|+..+
T Consensus 133 g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 3556788999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC--CCCCeEEEEECC
Q 010777 362 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSP 439 (501)
Q Consensus 362 iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp 439 (501)
|||++.+.++++|.+|...|.+|+|.|+|. -+++||.|+++|+||++..+.+..+.. -..+|++++||-
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~---------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFPSGD---------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eeeccCcceeEeecccccccceEEEccCCC---------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 999999999999999999999999999996 689999999999999999888776653 246899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 440 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 440 dg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
.|++|.+|..|.++.+||.-.++.+..+.++. .|.++..+|||.-+++|+.|.+|+||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999988888765 599999999999999999999999994
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-44 Score=321.33 Aligned_cols=248 Identities=30% Similarity=0.540 Sum_probs=223.0
Q ss_pred CceEEccCCccceeEEEECCC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 010777 144 SDVTILEGHTSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 221 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~--~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 221 (501)
..+.+|+||+..|.++.|+|. +..||||+.||++++|++.+.... +...+|...|..++|+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-----------------~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-----------------QDLEGHLARVSRVAFH 270 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch-----------------hhhhcchhhheeeeec
Confidence 446799999999999999997 568999999999999998764321 1223455779999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEE
Q 010777 222 GEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 300 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (501)
|+|++|+|+++|.+-++||+..+ ......||..+|++++|+|+|..++||+.|..-+|||++++.+
T Consensus 271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~------------- 337 (459)
T KOG0272|consen 271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC------------- 337 (459)
T ss_pred CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-------------
Confidence 99999999999999999998754 3445679999999999999999999999999999999988753
Q ss_pred EecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCC
Q 010777 301 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 380 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 380 (501)
+..+.||..+|.+|+|+|+|..|||||.|++++|||++..+.+.++.+|..-
T Consensus 338 ----------------------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 338 ----------------------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ----------------------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 4567789999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
|..|+|+|... .+|+|+|.|++++||..++..++.++.||.+.|.++.++|++++|+|+|.|.+|++|.
T Consensus 390 VS~Vk~~p~~g--------~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEG--------YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCC--------eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999432 4899999999999999999999999999999999999999999999999999999995
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.8e-43 Score=320.45 Aligned_cols=297 Identities=25% Similarity=0.428 Sum_probs=255.3
Q ss_pred CcccccCCCceEEccCCccceeEEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCC
Q 010777 136 SESFEIPNSDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 214 (501)
Q Consensus 136 ~~~~~~~~~~~~~l~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (501)
+..+.+|.+.++++.||+.+|+++.|.| .+++|++||.|+.|+||++.... .+...+.+|..+
T Consensus 197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~ 260 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKP 260 (503)
T ss_pred cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhh
Confidence 5668899999999999999999999999 79999999999999999987521 222344567899
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeee
Q 010777 215 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEF 293 (501)
Q Consensus 215 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 293 (501)
|..++|+.+|..|+|+|.|+.+++||++......--.....++++.|+|++ +.|++|+.|+.|+.||++++++++.+..
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 999999999999999999999999999865443222234467999999999 8899999999999999999999999999
Q ss_pred ccCCeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecC-CCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-
Q 010777 294 HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY- 370 (501)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~- 370 (501)
|.+++.++.|. .+.+|+++++|+++++|+.+.+.+++.... +...+.|+..+|++++++.-+.|+.|.|+.+...-.
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 99999999985 678999999999999999999988775543 345688999999999999999999999998643211
Q ss_pred --eeecccCCC--CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCC-CEEE
Q 010777 371 --VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLA 445 (501)
Q Consensus 371 --~~~~~~~~~--~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~la 445 (501)
...+.+|.. .-..+.|||+|. +|++|+.||.+.+||.++.+.+..+++|..++..+.|+|.. ..+|
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCC---------eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 233555543 345678999997 89999999999999999999999999999999999999975 6799
Q ss_pred EEeCCCcEEEEe
Q 010777 446 SGSLDKSMHIWS 457 (501)
Q Consensus 446 sgs~Dg~i~iw~ 457 (501)
|||.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 11
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.5e-41 Score=296.49 Aligned_cols=333 Identities=23% Similarity=0.379 Sum_probs=285.1
Q ss_pred CCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 010777 143 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 222 (501)
Q Consensus 143 ~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 222 (501)
+..+.+|..|+.+|++|+.+|+.++++|||.|....||++.++.. .....+|...|+++.||.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------~~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------AGELTGHKDSVTCCSFSH 116 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------eeEecCCCCceEEEEEcc
Confidence 445678999999999999999999999999999999999987642 122345678899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 223 EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 223 ~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
+|.+|+||+.+|.|+||.... .....+...-..+.=++|||.++.|++|+.||.+.+|.+..+...+.+.+|..++.+-
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 999999999999999999764 4445565556677789999999999999999999999999988889999999999888
Q ss_pred ecC-CCceEEEecCCCeEEEEEcCCCcceeeecCCC-CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecc----
Q 010777 302 DWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---- 375 (501)
Q Consensus 302 ~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---- 375 (501)
.|. +..+++++..|++|++|+..++.|+..+.+.. .+..++.++..+..+++|+.++.+++-+..+++.+....
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 885 46788999999999999999999988876443 467899999999999999999999999988888876665
Q ss_pred ----cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 376 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 451 (501)
Q Consensus 376 ----~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg 451 (501)
.+...+.++.+.|..+.. .+.|+|+-||+|-|||+...++.+.+. |..+|+.+.|-+ ..+|++++.+|
T Consensus 277 ~l~~~~e~~~esve~~~~ss~l------pL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKL------PLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred cccccchhhhhhhhhccccccc------chhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCc
Confidence 334445566665544321 268999999999999999877666655 888999999999 78999999999
Q ss_pred cEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 452 SMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 452 ~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.|+.||.++|+++.+|.++. .|++++.+|+++++++++.|++..||++.
T Consensus 349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999875 69999999999999999999999999863
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.9e-42 Score=302.13 Aligned_cols=299 Identities=30% Similarity=0.503 Sum_probs=264.3
Q ss_pred CceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 010777 144 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 223 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 223 (501)
.....+.||..+|+.+-|+|+-.++++++.|++|++||..++... ....+|...|.+++|+..
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-----------------~~LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-----------------RSLRGHTDSVFDISFDAS 161 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-----------------hhhhccccceeEEEEecC
Confidence 445678899999999999999999999999999999999887532 122345667999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC--ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 224 GTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
|+++++++.|=.+++|+... .+...+.+|.-.|.+++|-|.|++++|++.|.+|+.|++.++.+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-------------- 227 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-------------- 227 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee--------------
Confidence 99999999999999999875 34446778999999999999999999999999999999987654
Q ss_pred ecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCE
Q 010777 302 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 381 (501)
Q Consensus 302 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v 381 (501)
+++|.+|...|..++.+.||.++|+|+.|.++++|-+.++.+...++.|..+|
T Consensus 228 ---------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 228 ---------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred ---------------------------EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 45667788889999999999999999999999999999998889999999999
Q ss_pred EEEEEcCCCCCC------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 010777 382 YTIRWSPTGSGT------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 455 (501)
Q Consensus 382 ~~i~~~p~g~~~------~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~i 455 (501)
.+++|.|..... .+.++..++.++|.|++||+||+.++.+++++.+|...|..++|+|.|+||+++..|+++++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 999999875421 11223358999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeeEEEEecCCC-EEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 456 WSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 456 w~~~~~~~~~~~~~~~~-i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
||+++++.+++++.+.. +++++|+.+--++++|+-|-++.||..|
T Consensus 361 wdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 361 WDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred EEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence 99999999999876554 8999999999999999999999999865
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-41 Score=322.18 Aligned_cols=336 Identities=28% Similarity=0.498 Sum_probs=274.6
Q ss_pred cccCC-CceEEccC-CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE
Q 010777 139 FEIPN-SDVTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 216 (501)
Q Consensus 139 ~~~~~-~~~~~l~~-H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 216 (501)
+.+|. ..+..++. |++||..++|+|.+.+|+|||.|+.+++||+..+. +...+ .+|.+.|.
T Consensus 89 ~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------------~th~f----kG~gGvVs 151 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------------CTHSF----KGHGGVVS 151 (775)
T ss_pred EEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------------EEEEe----cCCCceEE
Confidence 34443 33556777 99999999999999999999999999999987542 22333 34578899
Q ss_pred EEEECCCCC--EEEEEeCCCeEEEEECCCce--eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEe--
Q 010777 217 TLDWNGEGT--LLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-- 290 (501)
Q Consensus 217 ~~~~s~~~~--~l~sg~~dg~i~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-- 290 (501)
++.|+|+-. .|++|+.|+.+++||..... ...+..|.+.|+++.|.+++..+++++.|+.+.+||+...+....
T Consensus 152 sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 152 SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred EEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec
Confidence 999999765 48999999999999987443 446788999999999999999999999999999999743110000
Q ss_pred --------------------------------------------------------------------------------
Q 010777 291 -------------------------------------------------------------------------------- 290 (501)
Q Consensus 291 -------------------------------------------------------------------------------- 290 (501)
T Consensus 232 ~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~ 311 (775)
T KOG0319|consen 232 LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED 311 (775)
T ss_pred hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence
Q ss_pred -------------------------------------------------eeeccCCeEEEe-cCCCceEEEecCCCeEEE
Q 010777 291 -------------------------------------------------FEFHSGPTLDVD-WRNNVSFATSSTDNMIYV 320 (501)
Q Consensus 291 -------------------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~ 320 (501)
+.+|...+++++ |..+..+++++.|+++++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 000111122222 222334788999999999
Q ss_pred EEcCCC----cceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-----e----eeecccCCCCEEEEEE
Q 010777 321 CKIGEN----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDK-----Y----VHDLREHSKEIYTIRW 386 (501)
Q Consensus 321 ~~~~~~----~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~-----~----~~~~~~~~~~v~~i~~ 386 (501)
|.+..+ .++....||.+.|.+++++..+ .+|+++|.|.++++|++...+ . ....+.|...|.+++.
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 988443 3456677999999999997655 579999999999999987621 1 1244679999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 466 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~ 466 (501)
+|+.+ ++||||.|.+.+||++.....+.++.||+..|+++.|+|..+.|||+|.|++|+||.+.+..++++
T Consensus 472 a~ndk---------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 472 APNDK---------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred cCCCc---------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence 99876 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 467 YTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 467 ~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+.++. .|..+.|-.+|++|++|+.||-+.+||++
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99865 59999999999999999999999999986
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-41 Score=329.06 Aligned_cols=311 Identities=27% Similarity=0.498 Sum_probs=258.8
Q ss_pred cCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 010777 141 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 220 (501)
Q Consensus 141 ~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 220 (501)
+|.-...++..-...++|+.|++|+++||-|-.|..|++|.+...+. +.++.. .
T Consensus 366 lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl--------------~~lk~~-----------~- 419 (707)
T KOG0263|consen 366 LPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL--------------KKLKDA-----------S- 419 (707)
T ss_pred CCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhh--------------ccccch-----------h-
Confidence 44444555555556799999999999999999999999999864321 111110 0
Q ss_pred CCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeE
Q 010777 221 NGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 299 (501)
Q Consensus 221 s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (501)
+...+-+++.|-.+.+-|... ....++.+|.+||++..|+|+.++|++||.|+++|+|.+.+..+.-.+.+|..||.
T Consensus 420 --~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVw 497 (707)
T KOG0263|consen 420 --DLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVW 497 (707)
T ss_pred --hhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCccee
Confidence 011122333344455555443 34456899999999999999999999999999999999999999999999999999
Q ss_pred EEecCC-CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCC
Q 010777 300 DVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 378 (501)
Q Consensus 300 ~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 378 (501)
.+.|.+ ...|++++.|++.++|......|.+.|.||.+.|.|+.|||+..+++|||.|.++|+||..++..++.|.+|.
T Consensus 498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~ 577 (707)
T KOG0263|consen 498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK 577 (707)
T ss_pred eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC
Confidence 999964 5688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 379 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 379 ~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
++|.+++|+|+|. +|++|+.||.|++||+.+++.+..+.+|++.|++|.||.+|..||+||.|++|++||+
T Consensus 578 ~~V~al~~Sp~Gr---------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 578 GPVTALAFSPCGR---------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred CceEEEEEcCCCc---------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999997 8999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCe------------------------eEEEEec-CCCEEEEEECCCCCEEEEE
Q 010777 459 KEGK------------------------IVKTYTG-NGGIFEVCWNKEGDKIAAC 488 (501)
Q Consensus 459 ~~~~------------------------~~~~~~~-~~~i~~~~ws~~g~~la~~ 488 (501)
..-. ++.+|.. +..|..+.|......|++|
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 649 TKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred hhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 6421 2333333 3457778887776555554
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-39 Score=274.79 Aligned_cols=289 Identities=27% Similarity=0.513 Sum_probs=236.6
Q ss_pred eEEccCCccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 010777 146 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 224 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 224 (501)
+..+.+|++.|-.++|+|- |..|||+|.|..||||+...+. ....+... ..+|...|.+++|+|.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-----------s~~ck~vl--d~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-----------SWTCKTVL--DDGHKRSVRSVAWSPHG 73 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-----------cEEEEEec--cccchheeeeeeecCCC
Confidence 4678999999999999998 9999999999999999976421 12222221 22577899999999999
Q ss_pred CEEEEEeCCCeEEEEECCC---ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 225 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
++|++|+.|.++.||.-.. +...++.+|...|.+++|+++|++|++|+.|++|.||.+....-
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-------------- 139 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-------------- 139 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------------
Confidence 9999999999999997653 34568899999999999999999999999999999998764321
Q ss_pred ecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC---CCceeeecccCC
Q 010777 302 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---QDKYVHDLREHS 378 (501)
Q Consensus 302 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~---~~~~~~~~~~~~ 378 (501)
-..+..+.+|...|..+.|||...+|+++|.|.+|++|+-. ...+++++.+|.
T Consensus 140 ------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 140 ------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred ------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 11234678899999999999999999999999999999765 345788999999
Q ss_pred CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 379 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 379 ~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
..|.+++|.|.|. .|++++.|++|+||-....-. .-|+.+++.++|. ...|||++.|+.|++|.-
T Consensus 196 ~TVW~~~F~~~G~---------rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 196 NTVWSLAFDNIGS---------RLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ceEEEEEecCCCc---------eEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999985 689999999999998552211 2377899999998 458999999999999986
Q ss_pred CCC------eeEEEE--ecCCCEEEEEECCC-CCEEEEEECCCeEEEEEee
Q 010777 459 KEG------KIVKTY--TGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 459 ~~~------~~~~~~--~~~~~i~~~~ws~~-g~~la~~~~d~~v~v~~~~ 500 (501)
..+ +++... .+...|++++|+|. .++|++|+.||.|.+|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 642 111111 22346999999996 6899999999999999874
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-41 Score=304.68 Aligned_cols=278 Identities=25% Similarity=0.481 Sum_probs=248.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEe
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 290 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 290 (501)
..+|..+.|.|+|+.|++|+..|...+|+...- ....+..|..+|.++.|++++.+++||+.+|.|++|++.-......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 457999999999999999999999999997432 2234678999999999999999999999999999999865554444
Q ss_pred eeeccCCeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 010777 291 FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 369 (501)
Q Consensus 291 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~ 369 (501)
...|...|.++.|. ++..|+++++|++|.+|+....+.-..+.||.-.|.|++|+|...+||+||.|..|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 44555889999986 66789999999999999999988888899999999999999999999999999999999999999
Q ss_pred eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCC-CCEEEEEe
Q 010777 370 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGS 448 (501)
Q Consensus 370 ~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd-g~~lasgs 448 (501)
++.++..|...|..+.|+|++. +|+++|.|..++++|+++.+.++++++|+..|+++.|+|- ..+|++|+
T Consensus 256 cl~tlh~HKntVl~~~f~~n~N---------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNGN---------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred hhhhhhhccceEEEEEEcCCCC---------eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 9999999999999999999985 8999999999999999988999999999999999999995 46888999
Q ss_pred CCCcEEEEeCCCCeeEEEE--ecCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 449 LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 449 ~Dg~i~iw~~~~~~~~~~~--~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
.||.|..|.+...+.+..+ .+.+.|++++|+|-|-+||+|+.|.++++|.
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999855544443 3356799999999999999999999999995
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=292.88 Aligned_cols=290 Identities=27% Similarity=0.472 Sum_probs=254.3
Q ss_pred ccCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 010777 140 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 219 (501)
Q Consensus 140 ~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 219 (501)
..|.+..+++.||.+.|.|+++.|-..+++|||.|++|+|||+.+++. +....+|...|..++
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------kltltGhi~~vr~va 200 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------KLTLTGHIETVRGVA 200 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------EEeecchhheeeeee
Confidence 345566678999999999999999999999999999999999998742 112234566799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe
Q 010777 220 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 298 (501)
Q Consensus 220 ~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 298 (501)
+|+-..|+++++.|++|+.||++. +.+....+|-+.|++|+.+|.-..|++|+.|.++++||+++..
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------ 268 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------ 268 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc------------
Confidence 999999999999999999999874 5556788999999999999999999999999999999998753
Q ss_pred EEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCC
Q 010777 299 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 378 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 378 (501)
.+.++.||..+|..+.+.|....++|||.|++|++||++.++...++..|.
T Consensus 269 -----------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 269 -----------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred -----------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence 345678999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 379 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 379 ~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
..+.+++.+|... .+|+++.| .|+-|++..|..+..+.+|...|++++...|| ++++|+..|.|.+||.
T Consensus 320 ksvral~lhP~e~---------~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 320 KSVRALCLHPKEN---------LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred ceeeEEecCCchh---------hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence 9999999999764 67888766 69999999999999999999999999998776 7889999999999999
Q ss_pred CCCeeEEEE---------ecCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 459 KEGKIVKTY---------TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 459 ~~~~~~~~~---------~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
++|--.+.. ..+.+|++.||...|..|++|..|++|.+|.
T Consensus 389 ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 389 KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred CcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 987533322 2345799999999999999999999999994
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=305.57 Aligned_cols=333 Identities=23% Similarity=0.417 Sum_probs=280.7
Q ss_pred CceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 010777 144 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 223 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 223 (501)
....++.||...|.++.|+.|.++|++||.|.++|||.+...+.. ......+|..+|-.+-|..+
T Consensus 136 vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------~~~~l~gHkd~VvacfF~~~ 200 (893)
T KOG0291|consen 136 VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------FTYALNGHKDYVVACFFGAN 200 (893)
T ss_pred eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------ceEeccCCCcceEEEEeccC
Confidence 344678899999999999999999999999999999998653311 11123456788999999999
Q ss_pred CCEEEEEeCCCeEEEEECC------------------------Cce-----------eEeecCCCCCEEEEEecCCCCEE
Q 010777 224 GTLLATGSYDGQARIWSTN------------------------GDL-----------KCTLSKHKGPIFSLKWNKKGDYL 268 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~------------------------~~~-----------~~~~~~h~~~V~~l~~~~~~~~l 268 (501)
...+++-+.||.+.+|..+ ++. +.-+......|++.+||+..+.|
T Consensus 201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~l 280 (893)
T KOG0291|consen 201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLL 280 (893)
T ss_pred cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEE
Confidence 9999999999999999744 111 11122233679999999999999
Q ss_pred EEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcC
Q 010777 269 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 346 (501)
Q Consensus 269 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 346 (501)
++|-..|...+|.+....++..+.....++..+.|. .+...+.++.=|.+.||+.....-+....||...+++++++|
T Consensus 281 vvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp 360 (893)
T KOG0291|consen 281 VVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP 360 (893)
T ss_pred EEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC
Confidence 999999999999999999999888887888888886 344444555568999999999888888899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---------
Q 010777 347 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--------- 417 (501)
Q Consensus 347 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~--------- 417 (501)
||+++|||+.||.|+|||..++-|+.+|..|...|+.+.|+..|. .|++.|.||+||.||+.
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~---------~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN---------VLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC---------EEEEeecCCeEEeeeecccceeeeec
Confidence 999999999999999999999999999999999999999998875 56677777777777653
Q ss_pred -----------------------------------CCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC-
Q 010777 418 -----------------------------------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG- 461 (501)
Q Consensus 418 -----------------------------------~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~- 461 (501)
+|+.+-.+.||.+||.+++|+|+|..||+||+|.+|++|++-..
T Consensus 432 ~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 432 SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence 34555556799999999999999999999999999999998654
Q ss_pred eeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 462 KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 462 ~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
..+.++.....++.++|+|||+.||++..||.|.+||..
T Consensus 512 ~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 512 GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 356777777789999999999999999999999999974
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=271.78 Aligned_cols=285 Identities=26% Similarity=0.452 Sum_probs=242.4
Q ss_pred CEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--
Q 010777 166 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-- 243 (501)
Q Consensus 166 ~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-- 243 (501)
-+|+|+|.|.+||+|...+|.+..+.+ .....|..+...|++++|+.|+. ..||+||++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-----------------h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-----------------HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-----------------cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC
Confidence 478999999999999998886543221 12467999999999999998876 6899999864
Q ss_pred -ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC-CCceEEEecCCCeEEEE
Q 010777 244 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVC 321 (501)
Q Consensus 244 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~ 321 (501)
..+.++.+|+..|+++.|..+|+++++||.||+++|||++...+.+.|.. ..++.++..+ +...++++..+|.|++|
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEE
Confidence 36789999999999999999999999999999999999999776666654 4888888875 45678999999999999
Q ss_pred EcCCCcceeeecC-CCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeeecccCCCCEEEEEEcCCCCCCC
Q 010777 322 KIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKEIYTIRWSPTGSGTN 394 (501)
Q Consensus 322 ~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~p~g~~~~ 394 (501)
|+........+.. ..-.|.++...|||.+++.+..-|...+|++-+. .++..++.|.+.+..+.+||++.
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--- 228 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--- 228 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc---
Confidence 9998765544432 3457999999999999999999999999998654 34567889999999999999997
Q ss_pred CCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC-
Q 010777 395 NPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG- 472 (501)
Q Consensus 395 ~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~- 472 (501)
+||++|.|.+++||+.++. +.-..+.+|...+++.+||.||.||+|||.|+++++|++..++.++.+.++..
T Consensus 229 ------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 229 ------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred ------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 8999999999999999887 55567899999999999999999999999999999999999999999987543
Q ss_pred EEEEEE
Q 010777 473 IFEVCW 478 (501)
Q Consensus 473 i~~~~w 478 (501)
..+++.
T Consensus 303 ~vc~~l 308 (311)
T KOG0315|consen 303 AVCVAL 308 (311)
T ss_pred cEEEEe
Confidence 444443
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-40 Score=296.28 Aligned_cols=282 Identities=26% Similarity=0.478 Sum_probs=251.4
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
+.+|+.+.|.|+|+.|+||+..|...+|+.... .+......|..+|.++.|+++|.+++||+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 457999999999999999999999999985321 122223457889999999999999999999
Q ss_pred CCeEEEEECCCceeEeecCCC-CCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC-ceEE
Q 010777 233 DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFA 310 (501)
Q Consensus 233 dg~i~iw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 310 (501)
+|.|++|+.+...+..+.+|. ..|.+++|+|....|++||.|++|+|||....+....+..|.-.+.+++|++. ..++
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 999999998876666666655 89999999999999999999999999999888777788999999999999865 5667
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCC
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 390 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g 390 (501)
+++.|+.|.+||.+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++.+.+..+++|...++++.|+|-.
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 391 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 391 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
. .+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-|..|++|+.|.++++|...
T Consensus 319 ~--------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 E--------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred c--------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 4 38999999999999999855655554 4799999999999999999999999999999753
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-37 Score=285.79 Aligned_cols=330 Identities=22% Similarity=0.343 Sum_probs=260.9
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.+++.|..-|+|++|+|||.+++|+|.||+|.+||=.++... ..+. ....|.+.|.+++|+||++.
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-------------g~l~-~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-------------GELE-DSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-------------EEec-CCCCccccEEEEEECCCCce
Confidence 467789999999999999999999999999999996665421 1111 13467889999999999999
Q ss_pred EEEEeCCCeEEEEECCCc--------------------------------------------eeEeecCCCCCEEEEEec
Q 010777 227 LATGSYDGQARIWSTNGD--------------------------------------------LKCTLSKHKGPIFSLKWN 262 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~--------------------------------------------~~~~~~~h~~~V~~l~~~ 262 (501)
|++++.|.+++|||+... ....+.+|..+|++|..+
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS 329 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence 999999999999985321 012346899999999999
Q ss_pred CCCCEEEEEecCCeEEEEeCCCcceeEee-eeccCCeEEEecCCCceEEEecCCCeEEEEEcCCC------------cc-
Q 010777 263 KKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN------------RP- 328 (501)
Q Consensus 263 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~------------~~- 328 (501)
|++.+|++|+.||.|.-|+..++..-+.. ..|...+..+.-.....+++++.|.++++.++..+ +|
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 99999999999999999999887644333 45667777777666667777777878777755321 11
Q ss_pred ------------------eeeecCCC--------CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eecccCCCC
Q 010777 329 ------------------IKTFAGHQ--------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREHSKE 380 (501)
Q Consensus 329 ------------------~~~~~~h~--------~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~ 380 (501)
+..+..+. -...+++++|++..+|.|+.|+.|+||.+...... ..+..|..+
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence 11122221 23568999999999999999999999999875533 245578999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE-EeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
++.++|+|++. +||+|...+.+.+||+.+.+... .+.-|...|++|+|+|+..++||||.|-.|.||++.
T Consensus 490 iT~vaySpd~~---------yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 490 ITDVAYSPDGA---------YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred ceEEEECCCCc---------EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 99999999997 89999999999999999877632 234489999999999999999999999999999998
Q ss_pred CCeeEEEE--ecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 460 EGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 460 ~~~~~~~~--~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.-...-.+ .+..+|+.+.|-. .+.|++.+.|.+|++|++-
T Consensus 561 kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 561 KPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ChhhheEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 64322222 2344699999954 4688899999999999974
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-39 Score=307.00 Aligned_cols=344 Identities=22% Similarity=0.341 Sum_probs=286.3
Q ss_pred ceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCC-------------------------C--C---
Q 010777 145 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ-------------------------N--G--- 194 (501)
Q Consensus 145 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~-------------------------~--~--- 194 (501)
+.+++.+|.+.|++++|++|+..++++|-|..+.|||+.+.+...... + +
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~ 263 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQ 263 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEE
Confidence 367889999999999999999999999999999999985321110000 0 0
Q ss_pred ---------------C----ce----------EE--------EEE-----eeccccccCCCCeEEEEE-CCCCCEEEEEe
Q 010777 195 ---------------P----LN----------VL--------VLK-----HVKGRTNEKSKDVTTLDW-NGEGTLLATGS 231 (501)
Q Consensus 195 ---------------~----~~----------~~--------~~~-----~~~~~~~~~~~~V~~~~~-s~~~~~l~sg~ 231 (501)
+ +. .. .+. .+..+..+.+..|.+|+| .|+.++|+.++
T Consensus 264 ~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT 343 (775)
T KOG0319|consen 264 YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT 343 (775)
T ss_pred EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe
Confidence 0 00 00 000 011122344566888876 56779999999
Q ss_pred CCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCc----ceeEeeeeccCCeEEEecC--C
Q 010777 232 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWR--N 305 (501)
Q Consensus 232 ~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~--~ 305 (501)
..+.+|+++..+.....+.+|+..|.++....+|.+|+|||.|+++++|-++.+ .++....+|...+.++.+. .
T Consensus 344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence 999999999888777789999999999996667789999999999999977433 2455667888888888774 3
Q ss_pred CceEEEecCCCeEEEEEcCCCcc-----ee----eecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc
Q 010777 306 NVSFATSSTDNMIYVCKIGENRP-----IK----TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 376 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~-----~~----~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 376 (501)
...|++++.|.++.+|++...++ +. +...|...|+|++++|+.++|||||.|.+.+||++.......++.+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence 45789999999999999876221 11 2347899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010777 377 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 456 (501)
Q Consensus 377 ~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw 456 (501)
|...+.++.|+|... +|+|+|.|++|+||.+.+..++.++.||...|..+.|-.+|..|++++.||.|++|
T Consensus 504 H~RGvw~V~Fs~~dq---------~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQ---------LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred CccceEEEEeccccc---------eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 999999999999875 89999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCeeEEEEecC-CCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 457 SLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 457 ~~~~~~~~~~~~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
+++++.+++++..+ ..|++++-+|.+.++++|+.||.|.+|
T Consensus 575 nikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 575 NIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 99999999999765 469999999999999999999999999
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-38 Score=273.52 Aligned_cols=246 Identities=28% Similarity=0.498 Sum_probs=210.0
Q ss_pred ceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 010777 145 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 224 (501)
Q Consensus 145 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 224 (501)
.+..|+||...|..++.++||++.+|||.|+++|+||+.+++. .+.+ .+|...|++++|++|.
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f----~GH~~dVlsva~s~dn 117 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-------------TRRF----VGHTKDVLSVAFSTDN 117 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE-------------EEEE----EecCCceEEEEecCCC
Confidence 3578999999999999999999999999999999999987642 1223 3457889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEeecCC--CCCEEEEEecCC--CCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEE
Q 010777 225 TLLATGSYDGQARIWSTNGDLKCTLSKH--KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 300 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~~~~~~~~~h--~~~V~~l~~~~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (501)
+.++||+.|++|++|++-+.++.++..+ .+-|.+++|+|+ ..+|+++|.|++|++||+++.+.
T Consensus 118 ~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l------------- 184 (315)
T KOG0279|consen 118 RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL------------- 184 (315)
T ss_pred ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-------------
Confidence 9999999999999999999888877655 678999999998 67999999999999999987543
Q ss_pred EecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCC
Q 010777 301 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 380 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 380 (501)
...|.||++.++.+++||||.++++|+.||.+.+||++.++.+..+ .+...
T Consensus 185 ----------------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 185 ----------------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred ----------------------------hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 2356789999999999999999999999999999999999988776 46789
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCC---------CCCeEEEEECCCCCEEEEEeCCC
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---------REPVYSLAFSPTGEYLASGSLDK 451 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h---------~~~v~~l~~spdg~~lasgs~Dg 451 (501)
|.+++|+|+- +.|+. ..+..|+|||+.++.++.+++-. .....+++||+||+.|.+|-.|+
T Consensus 236 v~sl~fspnr---------ywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 236 VNSLCFSPNR---------YWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred EeeEEecCCc---------eeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 9999999985 24544 44556999999999888765421 12246789999999999999999
Q ss_pred cEEEEeCC
Q 010777 452 SMHIWSLK 459 (501)
Q Consensus 452 ~i~iw~~~ 459 (501)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999875
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-37 Score=295.85 Aligned_cols=325 Identities=24% Similarity=0.453 Sum_probs=276.1
Q ss_pred ccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 010777 149 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 228 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 228 (501)
|......|+|++|||.-.+|++|=..|...+|.+..... +..+. -...+|..++|+..|.+++
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-------------ih~LS----is~~~I~t~~~N~tGDWiA 323 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-------------IHSLS----ISDQKILTVSFNSTGDWIA 323 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-------------EEEee----cccceeeEEEecccCCEEE
Confidence 333447799999999999999999999999999875321 11111 1135699999999999999
Q ss_pred EEeCC-CeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC-C
Q 010777 229 TGSYD-GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-N 305 (501)
Q Consensus 229 sg~~d-g~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~ 305 (501)
.|+.. |++.||+.... .+...++|-..+++++++|||+++++|+.||.|+|||.+.+-|..+|..|...+..+.|. .
T Consensus 324 ~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~ 403 (893)
T KOG0291|consen 324 FGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR 403 (893)
T ss_pred EcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec
Confidence 98765 89999997653 445678999999999999999999999999999999999999999999999999999996 4
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCC-CceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeecccCCCCEEE
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYT 383 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 383 (501)
+..+++++.||+|+.||+..-+..++|.... -...|++..|.|.++..|+.|. .|.+|++.+|+.+-.+.+|.++|.+
T Consensus 404 g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 404 GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 5667888999999999999888888887543 3578999999999999998886 5999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 462 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~ 462 (501)
++|+|.+. .|++||+|.+||+||+-... .+.++. +...++.++|+|+|+-||++..||.|.+||...+.
T Consensus 484 l~f~~~~~---------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 484 LSFSPDGS---------LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred eEEccccC---------eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 99999997 89999999999999986543 333443 66779999999999999999999999999998776
Q ss_pred eEEEEecC---------------------CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 463 IVKTYTGN---------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 463 ~~~~~~~~---------------------~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.+.++.+. ..++.+++|+||+.|.+|+.+..||+|+++
T Consensus 554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 55444321 246789999999999999999999999985
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.9e-39 Score=311.03 Aligned_cols=270 Identities=27% Similarity=0.474 Sum_probs=239.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEee
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 291 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 291 (501)
...|+|..|++|+.+||.|-.|..|++|.........++. .. + -..+=+.+.|-.+.+-|........++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~-~~------~---l~~~d~~sad~~~~~~D~~~~~~~~~L 447 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD-AS------D---LSNIDTESADVDVDMLDDDSSGTSRTL 447 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccc-hh------h---hccccccccchhhhhccccCCceeEEe
Confidence 4569999999999999999999999999987543322221 11 1 112334555666778888887778889
Q ss_pred eeccCCeEEEecCCCc-eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 010777 292 EFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 370 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~ 370 (501)
..|.+||....|.+.. .+++++.|+++++|.+.+...+..+.||..+|+.+.|+|-|-+|||+|.|++.++|......+
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 9999999999997655 557889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC
Q 010777 371 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 450 (501)
Q Consensus 371 ~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D 450 (501)
++.+.+|...|.|+.|+|+.. |+++||.|.+||+||+.+|..+..+.||.++|++|+|||+|++||+|+.|
T Consensus 528 lRifaghlsDV~cv~FHPNs~---------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSN---------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred hhhhcccccccceEEECCccc---------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 999999999999999999986 89999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 451 KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 451 g~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
|.|++||+.+|+++..+.++. .|+++.|+.||++||+|+.|.+|.|||+.
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 999999999999988887654 49999999999999999999999999986
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=267.83 Aligned_cols=279 Identities=24% Similarity=0.413 Sum_probs=248.0
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce--eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc
Q 010777 209 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 209 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~ 286 (501)
.+|.+.|+.+.|+|+|.+|+|||.|..|.+|++.+.+ ...+.+|.++|..+.|.++++.+++++.|++++.||+++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 4567889999999999999999999999999987653 45788999999999999999999999999999999999999
Q ss_pred eeEeeeeccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEe
Q 010777 287 WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 364 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd 364 (501)
....+..|...+..+... +...+.++++|+++++||++...+++++. ....++++.|..++..+.+|+-|+.|++||
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd 202 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWD 202 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeec
Confidence 999999999988888753 34456788999999999999888887764 345799999999999999999999999999
Q ss_pred CCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----CeEEEEeeCCCC----CeEEEE
Q 010777 365 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHRE----PVYSLA 436 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~----~~~~~~~~~h~~----~v~~l~ 436 (501)
++.....+.+.+|..+|+.+..+|.|. ++.+-+.|.++++||++- .+++..+.+|.. .....+
T Consensus 203 ~r~~d~~~~lsGh~DtIt~lsls~~gs---------~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 203 LRKNDGLYTLSGHADTITGLSLSRYGS---------FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred cccCcceEEeecccCceeeEEeccCCC---------ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 999999999999999999999999997 788999999999999873 355777776542 345679
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 437 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 437 ~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
|||+++++.+|+.|..+++||.....++..++++. .|++++|+|.-.+|.+|+.|++|++=
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999999999999999999888888888864 59999999999999999999998763
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=269.02 Aligned_cols=285 Identities=27% Similarity=0.451 Sum_probs=242.4
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
+..+.||++.|+.+.|+|+|..|||||.|..|.+|++..-.. +... ..+|+++|..+.|.+|+.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---------N~~~-------lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---------NFWV-------LKGHSGAVMELHGMRDGS 103 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---------ceee-------eccccceeEeeeeccCCC
Confidence 456889999999999999999999999999999999764322 1111 125789999999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCC-EEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEec
Q 010777 226 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 303 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (501)
.++++|.|.+++.||.. ++....+++|.+-|.++.-+.-|. .+.||+.|+++++||++..+.++++.. ..++.++.|
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f 182 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF 182 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe
Confidence 99999999999999986 456667889999999988555554 466889999999999998877766632 345678888
Q ss_pred CC-CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeeecccCC
Q 010777 304 RN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD----KYVHDLREHS 378 (501)
Q Consensus 304 ~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~----~~~~~~~~~~ 378 (501)
.+ .....+++-|+.|.+|+++.+....++.||...|+.+..+|+|.++.+-+.|.++++||++.. +++..+.+|.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 64 456788999999999999999999999999999999999999999999999999999998743 3455555443
Q ss_pred ----CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010777 379 ----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 379 ----~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
.....++|+|++. .+.+|+.|..+++||......++.+.||.+.|++++|+|...+|.+++.|.+|+
T Consensus 263 hnfeknlL~cswsp~~~---------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGT---------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred hhhhhhcceeeccCCCC---------ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeE
Confidence 3346679999986 678899999999999999999999999999999999999999999999999998
Q ss_pred EE
Q 010777 455 IW 456 (501)
Q Consensus 455 iw 456 (501)
+=
T Consensus 334 lg 335 (338)
T KOG0265|consen 334 LG 335 (338)
T ss_pred ee
Confidence 73
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.4e-36 Score=321.55 Aligned_cols=289 Identities=21% Similarity=0.413 Sum_probs=232.0
Q ss_pred ccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEE
Q 010777 149 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLL 227 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l 227 (501)
+.+|...|++++|+|+|++|||||.|++|+||++............+ .... .....|.+++|++ ++.+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~-----~~~~-----~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP-----VVEL-----ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc-----eEEe-----cccCceeeEEeccCCCCEE
Confidence 34599999999999999999999999999999975421110000000 0011 1235689999987 57899
Q ss_pred EEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecC-CCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 228 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 228 ~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
++|+.||.|+|||... .....+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.....
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--------------- 613 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--------------- 613 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE---------------
Confidence 9999999999999864 55667889999999999997 788999999999999999987643222
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEc-CCCCEEEEEeCCCeEEEEeCCCCc-eeeecccCCCCEEE
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYT 383 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~v~~ 383 (501)
+.. ...+.++.|+ +++.+|++|+.||.|++||++..+ .+..+.+|...|.+
T Consensus 614 --------------------------~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~ 666 (793)
T PLN00181 614 --------------------------IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY 666 (793)
T ss_pred --------------------------Eec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence 121 2357788885 578999999999999999998765 46677889999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
+.|.+ +. +|++++.|++|+|||++. ..++..+.+|...+++++|+|++.+||+|+.|+.|++|+
T Consensus 667 v~f~~-~~---------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 667 VRFVD-SS---------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEEeC-CC---------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 99963 32 689999999999999974 356788999999999999999999999999999999999
Q ss_pred CCCCeeEEEEe--------------cCCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 458 LKEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 458 ~~~~~~~~~~~--------------~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
......+..+. ....|.+++|+|+|+.|++|+.+|.|.||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 87654433221 1234899999999999999999999999985
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.4e-37 Score=304.80 Aligned_cols=289 Identities=28% Similarity=0.532 Sum_probs=248.8
Q ss_pred eEEccCC-ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 010777 146 VTILEGH-TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 224 (501)
Q Consensus 146 ~~~l~~H-~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 224 (501)
..++.+| ...|.++.|+|+|++|++++.|+.+++|+...... .......+|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECCCC
Confidence 4455554 88999999999999999999999999999854431 0011114567789999999999
Q ss_pred CEEEEEeCCCeEEEEEC-CC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 225 TLLATGSYDGQARIWST-NG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
+++++|+.|++|+||+. .. ....++.+|...|++++|+|+++.+++|+.|++|+|||++++++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~--------------- 280 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC--------------- 280 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE---------------
Confidence 99999999999999998 33 46678999999999999999999999999999999999987653
Q ss_pred cCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeecccCCCC
Q 010777 303 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKE 380 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~ 380 (501)
+..+.+|.+.|++++|++++++|++++.|+.|+|||+.++. ++..+..+...
T Consensus 281 --------------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 281 --------------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred --------------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence 44667889999999999999999999999999999999998 55666665555
Q ss_pred --EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCC---eEEEEECCCCCEEEEEeCCCcEEE
Q 010777 381 --IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSPTGEYLASGSLDKSMHI 455 (501)
Q Consensus 381 --v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~---v~~l~~spdg~~lasgs~Dg~i~i 455 (501)
++.++|+|++. ++++++.|+.+++||+..+..+..+.+|... +.+..+++.+.++++|+.|+.|++
T Consensus 335 ~~~~~~~fsp~~~---------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 335 APVTSVQFSPNGK---------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred CceeEEEECCCCc---------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 99999999987 8899999999999999999999999998774 444566789999999999999999
Q ss_pred EeCCCCeeEEEEecC--CCEEEEEECCCCCEEEEEE--CCCeEEEEEe
Q 010777 456 WSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF--ANHTVCVLDF 499 (501)
Q Consensus 456 w~~~~~~~~~~~~~~--~~i~~~~ws~~g~~la~~~--~d~~v~v~~~ 499 (501)
|++.++..+..+.++ ..+..++|+|..+++++++ .|+.+.+|--
T Consensus 406 ~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred EeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 999998888888776 5689999999999999998 7888999853
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-36 Score=283.64 Aligned_cols=285 Identities=36% Similarity=0.611 Sum_probs=251.0
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.++++|..+|++++|+|++++|++++.||.|++|++.++.. .... ..+...+..+.|++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTL----KGHTGPVRDVAASADGTY 65 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEE----ecCCcceeEEEECCCCCE
Confidence 45779999999999999999999999999999999875431 1111 224567889999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 227 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
+++++.+|.|++|+... .....+..|...|.++.|++++.++++++.|+.+++||+.++.....+..|...+.++.|.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 99999999999999876 45667788999999999999988888888899999999998888888888888899999977
Q ss_pred Cc-eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEE
Q 010777 306 NV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 384 (501)
Q Consensus 306 ~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i 384 (501)
.. .+++++.++.+++|++...+++..+..|...+.+++|+|+++.+++++.|+.|++||++.++.+..+..|...+.++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 225 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence 54 44555559999999999888888899999999999999999999999999999999999988888887888899999
Q ss_pred EEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 385 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 385 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
.|+|++. ++++++.||.|++|++.+++.+..+.+|...|.+++|+|++++|++++.||.|++|+
T Consensus 226 ~~~~~~~---------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGY---------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCc---------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999854 777787899999999999999999999999999999999999999999999999996
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-36 Score=277.30 Aligned_cols=277 Identities=29% Similarity=0.595 Sum_probs=248.8
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 010777 154 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 233 (501)
Q Consensus 154 ~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 233 (501)
..|++++|+.+|.+||||+.||.++||+..... ......|.++|.++.|+..|.||++++.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------ISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------hhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 579999999999999999999999999975431 12234568899999999999999999999
Q ss_pred CeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC-CceEEE
Q 010777 234 GQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFAT 311 (501)
Q Consensus 234 g~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 311 (501)
+++.+||.. +.....+.-|..+-..+.|-.+ ..|++++.|+.|+++-+.....+.++..|.++|.++.|.+ ...+++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence 999999974 4566678888888677888654 5689999999999999998899999999999999999975 566789
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC---------EEEEEeCCCeEEEEeCCCCceeeecccCCCCEE
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS---------LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 382 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~ 382 (501)
+++|+++++|.......+..+.+|...|..+.|+|+|. .+++++.|++|++||+..+.+++.|..|..+|+
T Consensus 377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 99999999999999988999999999999999999763 689999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 383 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 383 ~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
+++|+|+|. ++|+|+.||.|.+|++++++.++...+. +.|..|+|+.+|.+|..+-.|+.+++-|++
T Consensus 457 svafS~~g~---------ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 457 SVAFSPNGR---------YLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCc---------EEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999997 8999999999999999999999988754 569999999999999999999999998875
No 32
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=281.90 Aligned_cols=298 Identities=27% Similarity=0.423 Sum_probs=237.6
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeecccc--ccCCCCeEEEEECCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT--NEKSKDVTTLDWNGE 223 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~s~~ 223 (501)
+..+..|..+|.||+++|+++++++++.|++|.-|++.++.........+ .+.......... ..|.+.|.+++.|+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCcccccccceeEEEEEcCC
Confidence 56788899999999999999999999999999999999887442211110 000000000011 267889999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 224 GTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
|+||++|+.|..|.||+... .....+.+|.++|.+++|....+.|++++.|++|++|++....++.++..|+..+..++
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999865 44557899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEe-cCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc-C---
Q 010777 303 WRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-H--- 377 (501)
Q Consensus 303 ~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~--- 377 (501)
.....+.++. +.|.++++|++... ....|.+|.+.+.|++|-. ..+|++||.+|.|.+|++-+.+++.+.+. |
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 8776666655 59999999999443 4457889999999999984 46788999999999999998888765542 1
Q ss_pred --------CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEeeCCCCCeEEEEECCCCCEEE
Q 010777 378 --------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLA 445 (501)
Q Consensus 378 --------~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spdg~~la 445 (501)
...|++++..|... ++|+||.+|.||+|-+..+ .+++.+. ..+.|++|+|+++|++|+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sd---------L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSD---------LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred CCccccccccceeeeEecccCc---------eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEE
Confidence 12577777777654 8999999999999998776 4555555 567899999999999776
Q ss_pred EE-eCCCcEEEE
Q 010777 446 SG-SLDKSMHIW 456 (501)
Q Consensus 446 sg-s~Dg~i~iw 456 (501)
+| +....+=-|
T Consensus 442 agiGkEhRlGRW 453 (479)
T KOG0299|consen 442 AGIGKEHRLGRW 453 (479)
T ss_pred Eeccccccccee
Confidence 65 333333333
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.1e-36 Score=265.83 Aligned_cols=286 Identities=22% Similarity=0.383 Sum_probs=233.4
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
...+.||+.+|+|+.||.+|.+||||+.+|.|+||...++.... .+ ...-..+--|.|+|.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~----------~~-------~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW----------KL-------DQEVEDIEWLKWHPRAH 161 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE----------Ee-------ecccCceEEEEeccccc
Confidence 45788999999999999999999999999999999988764211 11 01235688899999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec-cCCeEEEec
Q 010777 226 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SGPTLDVDW 303 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~ 303 (501)
.|+.|+.||.+.+|.+.. .....+.+|+.++++-.|.|+|+.++++..||+|++||+.++.....+... .....++.+
T Consensus 162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~ 241 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL 241 (399)
T ss_pred EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence 999999999999999876 566789999999999999999999999999999999999999766555422 122333444
Q ss_pred C-CCceEEEecCCCeEEEEEcCCCcceeeec--------CCCCceeEEEE---cCCCCEEEEEeCCCeEEEEeCCCCcee
Q 010777 304 R-NNVSFATSSTDNMIYVCKIGENRPIKTFA--------GHQGEVNCVKW---DPTGSLLASCSDDVTAKIWNMKQDKYV 371 (501)
Q Consensus 304 ~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--------~h~~~v~~v~~---~~~~~~l~s~s~Dg~i~iwd~~~~~~~ 371 (501)
. ....++.++.++.+++.....++.+..+. .+...+.|+.+ +..-++.|+|+-||+|.|||+...++.
T Consensus 242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 3 23345667777777777777776665554 34444555554 445578999999999999999887766
Q ss_pred eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 372 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 451 (501)
Q Consensus 372 ~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg 451 (501)
+.+ .|...|..+.|-+.. +|++++.+|.|++||.++|++++++.||..+|.+++++|++++++|+|.|+
T Consensus 322 ~~c-~he~~V~~l~w~~t~----------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 322 HIC-EHEDGVTKLKWLNTD----------YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred eec-cCCCceEEEEEcCcc----------hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 544 577889999998832 789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCC
Q 010777 452 SMHIWSLK 459 (501)
Q Consensus 452 ~i~iw~~~ 459 (501)
+.+||.+.
T Consensus 391 ~a~VF~v~ 398 (399)
T KOG0296|consen 391 TALVFEVP 398 (399)
T ss_pred eEEEEecC
Confidence 99999864
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.5e-35 Score=275.62 Aligned_cols=280 Identities=36% Similarity=0.623 Sum_probs=251.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCccee
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 288 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 288 (501)
+|..+|++++|+|++++|++++.+|.+++|+.... ....+..|...+..+.|+|++++|++++.|+.|++||+.+++..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 45688999999999999999999999999998643 45667789999999999999999999999999999999988878
Q ss_pred EeeeeccCCeEEEecCCCc-eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010777 289 QQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~ 367 (501)
..+..+...+.++.|.+.. .+++++.++.+++|++...+++..+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 8888888889999987654 455555699999999998888888889999999999999999999998899999999998
Q ss_pred CceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEE
Q 010777 368 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 447 (501)
Q Consensus 368 ~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasg 447 (501)
++.+..+..|...+.++.|+|++. .+++++.++.|++||++.++.+..+..|..+|.+++|+|++.+++++
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGE---------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cccceeEecCccccceEEECCCcC---------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 888888888888999999999885 57777789999999999999988888899999999999999999999
Q ss_pred eCCCcEEEEeCCCCeeEEEEecC-CCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 448 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 448 s~Dg~i~iw~~~~~~~~~~~~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
+.||.|++|++.+++.+..+..+ ..+.+++|+|+++.|++++.|+.|.||+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 98999999999998888777654 4699999999999999999999999996
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=273.80 Aligned_cols=268 Identities=28% Similarity=0.522 Sum_probs=232.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeE
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 289 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 289 (501)
.++.|+|+.+. ...+++|..|++|+|||.+. .....+.||++.|.|+.|.. ..+++||+|.+|++||+++++.++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 46789999874 56899999999999999876 45567899999999998864 589999999999999999999999
Q ss_pred eeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcc---eeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 290 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
++..|...++.+.|.++ .+++++.|.++.+|++..+.. ...+.||...|+.+.|+ .++++++|.|.+|++|++.
T Consensus 272 tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred HHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence 99999999999988655 578999999999999987653 35678999999999995 5699999999999999999
Q ss_pred CCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEE
Q 010777 367 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 446 (501)
Q Consensus 367 ~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~las 446 (501)
+..++.++.+|...|-|+.+. + .++++||.|.+||+||+..|.++..+.||..-|.+|.| |.+.|++
T Consensus 349 t~efvRtl~gHkRGIAClQYr--~---------rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYR--D---------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ceeeehhhhcccccceehhcc--C---------eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence 999999999999999888763 2 27899999999999999999999999999999999999 5679999
Q ss_pred EeCCCcEEEEeCCCCeeE---------EEE-ecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 447 GSLDKSMHIWSLKEGKIV---------KTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 447 gs~Dg~i~iw~~~~~~~~---------~~~-~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
|+.||+|+|||+..+.-. .++ .+.+.|+.++|. --.+++++.|.+|.||||-
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 999999999999876422 222 234578999884 4589999999999999973
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-36 Score=271.03 Aligned_cols=301 Identities=26% Similarity=0.381 Sum_probs=238.8
Q ss_pred ccccCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE
Q 010777 138 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 217 (501)
Q Consensus 138 ~~~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 217 (501)
...+|.....+|..|++.|.-+.||++|++|||||.|.++.||.+..-.. + .+.....+|..+|..
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----------~----kl~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----------F----KLKKTLVGHSQPVSY 274 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----------e----eeeeeeecccCceEE
Confidence 34578888889999999999999999999999999999999999754221 1 112233456889999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCceeEee--cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeecc
Q 010777 218 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 295 (501)
Q Consensus 218 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 295 (501)
+.||||.++|++|+.+..+++||+........ .+|...+.+++|.|+|..|++|+.|+++..||+.... ...++...
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr 353 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVR 353 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccc
Confidence 99999999999999999999999875433322 2356889999999999999999999999999986543 33333322
Q ss_pred -CCeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q 010777 296 -GPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 373 (501)
Q Consensus 296 -~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 373 (501)
..+.++... +...+++...|..|++++......+... .-..+|+++.+|.+++++++.-.+..+++||+...+.+..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 235555543 3344556668888888887654433222 2346799999999999999999999999999998888888
Q ss_pred cccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCC-CEEEEEeCCCc
Q 010777 374 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKS 452 (501)
Q Consensus 374 ~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~lasgs~Dg~ 452 (501)
+.+|...-+-|.-.-.|. ...++++||.|+.|+||+..+++++.++.||...|++|+|+|.. .++|+||.||+
T Consensus 433 Y~Ghkq~~fiIrSCFgg~------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGG------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred hhcccccceEEEeccCCC------CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 888877666554332222 22489999999999999999999999999999999999999965 67899999999
Q ss_pred EEEEeCCC
Q 010777 453 MHIWSLKE 460 (501)
Q Consensus 453 i~iw~~~~ 460 (501)
|+||....
T Consensus 507 IRIWg~~~ 514 (519)
T KOG0293|consen 507 IRIWGPSD 514 (519)
T ss_pred EEEecCCc
Confidence 99998753
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-36 Score=284.27 Aligned_cols=285 Identities=26% Similarity=0.365 Sum_probs=252.4
Q ss_pred EccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 010777 148 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 227 (501)
Q Consensus 148 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 227 (501)
++..|+..|-++.|||...+++++=..|.|.||+..+....... ....-||.+..|-+.-+++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-----------------eV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-----------------EVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-----------------eecccchhhheeeeccceE
Confidence 45669999999999999999999999999999998875432211 1123578888999999999
Q ss_pred EEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC
Q 010777 228 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 306 (501)
Q Consensus 228 ~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (501)
++|+.|..||||+.+. ..+..|..|.+-|.+++.||...+++|+|.|-+|++||.+.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--------------------- 129 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--------------------- 129 (794)
T ss_pred EEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---------------------
Confidence 9999999999999875 566789999999999999999999999999999999997543
Q ss_pred ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEE
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 385 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 385 (501)
..+.++|.||...|.+++|+|. .+.||+++-|++|+||.+.+..+..++.+|...|.++.
T Consensus 130 -------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 130 -------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred -------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence 1234688999999999999995 57899999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 010777 386 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 465 (501)
Q Consensus 386 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~ 465 (501)
|-+.|. +.+|+||+.|.+|+|||.++..|+.++.||...|..+.|+|.-..++|||.||+++||+..+.++..
T Consensus 191 yy~~gd-------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 191 YYTGGD-------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred eccCCC-------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 988774 3489999999999999999999999999999999999999999999999999999999999998887
Q ss_pred EEe-cCCCEEEEEECCCCCEEEEEECCCeEEE
Q 010777 466 TYT-GNGGIFEVCWNKEGDKIAACFANHTVCV 496 (501)
Q Consensus 466 ~~~-~~~~i~~~~ws~~g~~la~~~~d~~v~v 496 (501)
++. +-+.+++++-.+.+..+|.|+..|.|.|
T Consensus 264 tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 264 TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 775 3567999999999999999999998765
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.4e-35 Score=245.11 Aligned_cols=265 Identities=20% Similarity=0.366 Sum_probs=227.5
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc--eeEeeeeccCCeEEE
Q 010777 225 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDV 301 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~--~~~~~~~~~~~~~~~ 301 (501)
-+|+|+|+|.+||+|... |.+..+++...+.|..|...|+++.|++++. ..||+||++++. .+.+|..|...+..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999975 4555677766678999999999998888875 679999998865 477899999999999
Q ss_pred ecCCC-ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecc-cCCC
Q 010777 302 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSK 379 (501)
Q Consensus 302 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~ 379 (501)
.|... .-..+++.||++++||++....-+.| .|..+|+++..+|+...|++|..+|.|++||+....+.+.+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99754 55689999999999999986555554 477999999999999999999999999999999886655543 3456
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC------eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcE
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 453 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i 453 (501)
.|.++...|+|+ +|+.+..-|+.++|++-+. .++..++.|.+-|..+.||||++|||++|.|.++
T Consensus 169 ~i~sl~v~~dgs---------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv 239 (311)
T KOG0315|consen 169 SIQSLTVMPDGS---------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV 239 (311)
T ss_pred ceeeEEEcCCCc---------EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE
Confidence 789999999997 7888999999999998654 3556788999999999999999999999999999
Q ss_pred EEEeCCCC-eeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 454 HIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 454 ~iw~~~~~-~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+||+..+. ++...++++. .+++++||.||.+|++|+.|+.+++|++.
T Consensus 240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 99999987 5556666654 59999999999999999999999999874
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-35 Score=244.23 Aligned_cols=290 Identities=19% Similarity=0.328 Sum_probs=243.2
Q ss_pred ccCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 010777 140 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 219 (501)
Q Consensus 140 ~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 219 (501)
+.|.....+|..|+++|.++.|+-+|++.+|+|.|.+||+|+...+.. ++. +.+|...|..++
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l-------------ikt----YsghG~EVlD~~ 66 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL-------------IKT----YSGHGHEVLDAA 66 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce-------------eee----ecCCCceeeecc
Confidence 456667788999999999999999999999999999999999765532 233 344567799999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCc--ceeEeeeeccC
Q 010777 220 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--EWKQQFEFHSG 296 (501)
Q Consensus 220 ~s~~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~ 296 (501)
.+.|...|++|+.|..+.+||++ ++....+.+|.+.|..++|+.+...+++|+.|.++++||.++. +.++.+.....
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999999999999999987 5667789999999999999999999999999999999998764 45666666666
Q ss_pred CeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc
Q 010777 297 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 376 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 376 (501)
.+.+++.. ...+++++.||+++.|+++.+.....+.|| +|+|+.|++|++.++.++.|+++|+.|-.+++.+...++
T Consensus 147 ~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 147 GVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred ceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 67777654 345788999999999999988776666554 799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCC-eEEEEECCCCCEEEEEeCCCcEEE
Q 010777 377 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGSLDKSMHI 455 (501)
Q Consensus 377 ~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~spdg~~lasgs~Dg~i~i 455 (501)
|...-+.+..+-..+ ...+++||.||.|.+||+.....+..+..+... |++++++|.-.-|+++. ++.+.+
T Consensus 224 hkn~eykldc~l~qs-------dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~ 295 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQS-------DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLF 295 (307)
T ss_pred cccceeeeeeeeccc-------ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceec
Confidence 988777664433322 136899999999999999999999999988877 89999999877666665 344566
Q ss_pred Ee
Q 010777 456 WS 457 (501)
Q Consensus 456 w~ 457 (501)
|-
T Consensus 296 ~~ 297 (307)
T KOG0316|consen 296 WY 297 (307)
T ss_pred ee
Confidence 64
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-35 Score=245.45 Aligned_cols=242 Identities=24% Similarity=0.453 Sum_probs=220.0
Q ss_pred eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEec-CCCceEEEecCCCeEEEEEc
Q 010777 245 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKI 323 (501)
Q Consensus 245 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~ 323 (501)
....+.+|.++|..+.|+-+|+|.++|+.|++|++|++..+.+++++..|...++++.. .++..|++++.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567889999999999999999999999999999999999999999999999998876 46788999999999999999
Q ss_pred CCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEE
Q 010777 324 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 401 (501)
Q Consensus 324 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~ 401 (501)
.+++.++.|.||.+.|+.++|+.+...+++|+.|.++++||.++. ++++.+......|.+|..+.. .
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-----------e 157 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-----------E 157 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-----------E
Confidence 999999999999999999999999999999999999999998764 567777777788888887543 5
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC---EEEEEE
Q 010777 402 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG---IFEVCW 478 (501)
Q Consensus 402 l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~---i~~~~w 478 (501)
+++||.||++|.||++.|+.....-+| ||++++||+||+.+..++.|++|++.|-.+|++++.|.++.. =..+++
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 789999999999999999987666555 899999999999999999999999999999999999988653 257889
Q ss_pred CCCCCEEEEEECCCeEEEEEe
Q 010777 479 NKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 479 s~~g~~la~~~~d~~v~v~~~ 499 (501)
+....++++|+.||.|++||+
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cccceeEEeccCCceEEEEEe
Confidence 999999999999999999997
No 41
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=269.11 Aligned_cols=304 Identities=23% Similarity=0.329 Sum_probs=237.9
Q ss_pred ccccCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE
Q 010777 138 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 217 (501)
Q Consensus 138 ~~~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 217 (501)
...||.+.-..|++|+..|.++++.|.|..|+|||.|.+|++||+...... ++.++.-.......|.+
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~P~E~h~i~s 219 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQPCETHQINS 219 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccCcccccccce
Confidence 345888888999999999999999999999999999999999999754211 11222222334567999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCceeEe-------------ecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCC
Q 010777 218 LDWNGEGTLLATGSYDGQARIWSTNGDLKCT-------------LSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 283 (501)
Q Consensus 218 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-------------~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~ 283 (501)
+.|++.|..|+..+....++|+|..|..... -.+|...+++.+|+|.. ..|+|++.||++||||+.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 9999999999999999999999987754432 35799999999999987 469999999999999987
Q ss_pred CcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEE
Q 010777 284 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 363 (501)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iw 363 (501)
..+-..+. +... ...+..-.++.++|+|||++||+|..||.|.+|
T Consensus 300 ~~k~q~qV-----------------------------ik~k------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 300 NTKSQLQV-----------------------------IKTK------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CchhheeE-----------------------------Eeec------cCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 54321111 1100 011233467899999999999999999999999
Q ss_pred eCCCCce--e-eecccCCC--CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCC--CCeEEE
Q 010777 364 NMKQDKY--V-HDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHR--EPVYSL 435 (501)
Q Consensus 364 d~~~~~~--~-~~~~~~~~--~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~--~~v~~l 435 (501)
+...... . ..-.+|.. .|++|.||++|. +|++-+.|+++++||++.. +++.+..+.. -+-+.+
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc 415 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC 415 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc
Confidence 9744321 1 11235655 899999999997 8999999999999999865 4455544432 345789
Q ss_pred EECCCCCEEEEEeC------CCcEEEEeCCCCeeEEEEec-CCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 436 AFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 436 ~~spdg~~lasgs~------Dg~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
+|||+.++|++|+. .|++.+||..+...+..+.- ...|..+.|+|.-+.|.+|+.||+++||
T Consensus 416 ~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 416 CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 99999999999863 47899999999888777654 4458899999999999999999999887
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.7e-36 Score=269.37 Aligned_cols=289 Identities=22% Similarity=0.402 Sum_probs=240.5
Q ss_pred ccCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 010777 140 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 219 (501)
Q Consensus 140 ~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 219 (501)
.+|......+..|.+.|+.+.|-++...|+|||.|..|++|++...+.. +.+...+..++|+.++
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d 226 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSID 226 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceee
Confidence 4677777889999999999999999999999999999999998654311 1122234467899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe
Q 010777 220 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 298 (501)
Q Consensus 220 ~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~ 298 (501)
|.+++.++++++.|+.+++|+.+. ....++.+|++.|+++.|......+++|+.|.+|++||+....+.+++..
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----- 301 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----- 301 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----
Confidence 999999999999999999999875 56678999999999999998887899999999999999987665443321
Q ss_pred EEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCC
Q 010777 299 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 378 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 378 (501)
...++.|..+ ...+++|..|++||+||.++..++.++..+.
T Consensus 302 -------------------------------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg 342 (459)
T KOG0288|consen 302 -------------------------------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG 342 (459)
T ss_pred -------------------------------------cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc
Confidence 1123334433 4568899999999999999998888876655
Q ss_pred CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCC----CCCeEEEEECCCCCEEEEEeCCCcEE
Q 010777 379 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----REPVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 379 ~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
.|+++..++++. -|.+++.|.++.+.|+++......+.+. ....+.+.|||++.|+|+||.||.|+
T Consensus 343 -~vtSl~ls~~g~---------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 343 -RVTSLDLSMDGL---------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred -ceeeEeeccCCe---------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence 899999999885 5677799999999999998877766532 12378999999999999999999999
Q ss_pred EEeCCCCeeEEEEec---CCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 455 IWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 455 iw~~~~~~~~~~~~~---~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
||++.+|++...+.. +.+|++++|+|.|..|++++.++.+++|
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999998777644 3469999999999999999999999998
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.5e-36 Score=273.85 Aligned_cols=283 Identities=22% Similarity=0.410 Sum_probs=240.8
Q ss_pred cccccCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC--CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeC
Q 010777 206 GRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 282 (501)
Q Consensus 206 ~~~~~~~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~ 282 (501)
....+|.+.|+++.|.| .+.+|++|+.|+.|+||++. +.++.++.+|..+|..++|+++|..|+|+|-|++|++||+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 34567889999999999 89999999999999999974 5677899999999999999999999999999999999999
Q ss_pred CCcceeEeeeeccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeE
Q 010777 283 KTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 360 (501)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i 360 (501)
++|.+...|... ..+.++.|. +...|++++.|+.|+.||++.++.++.+..|-+.|+.+.|-++|+.+++.++|+++
T Consensus 288 ETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 288 ETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred ccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 999988877543 344566664 44689999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeeecc-cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---EEEEeeCCCCC--eEE
Q 010777 361 KIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHREP--VYS 434 (501)
Q Consensus 361 ~iwd~~~~~~~~~~~-~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---~~~~~~~h~~~--v~~ 434 (501)
+||+.+..-.+..+. .....+.++..+|++. +++.-+.|+.|.+|.+...- ....+.||..+ -..
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~---------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGK---------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCC---------eehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 999998765543322 2333456777788876 78888999999999865322 22356777643 456
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCEEEEEECCCC-CEEEEEECCCeEEEEE
Q 010777 435 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLD 498 (501)
Q Consensus 435 l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~-~~i~~~~ws~~g-~~la~~~~d~~v~v~~ 498 (501)
+.|||||.+|++|+.||.+.+||.++-+++..+..+ +.+..+.|+|.- +.+|+|+.+|.|.||+
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 899999999999999999999999999999888776 678999999965 6999999999999996
No 44
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.1e-36 Score=264.53 Aligned_cols=273 Identities=23% Similarity=0.448 Sum_probs=233.4
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
..++|+|+.+ |...++||..|++|+|||..+-. +.....+|++.|.|+.|. .+.+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~-----------------c~~~L~GHtGSVLCLqyd--~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE-----------------CLKILTGHTGSVLCLQYD--ERVIVSGS 254 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHH-----------------HHHhhhcCCCcEEeeecc--ceEEEecC
Confidence 4578999988 56789999999999999976432 112234578899999985 45999999
Q ss_pred CCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc---eeEeeeeccCCeEEEecCCCc
Q 010777 232 YDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNV 307 (501)
Q Consensus 232 ~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 307 (501)
.|.+|+|||.+. ....++.+|..+|..+.|+. .+++++|.|.++.+||+.... +...+.+|...+..++|...
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 999999999874 55667889999999999974 599999999999999986543 34456788889999999776
Q ss_pred eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 308 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 308 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
.+++++.|.+|++|++.+...++++.||...|.|+.+ .++++++||.|.+||+||+..|.++..+.+|..-|.++.|.
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 7899999999999999999999999999999999987 48999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe---------EEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 388 PTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
.. -+++|..||+|++||+..+. ++.++..|++.|..+.| |...|++++.|.+|.|||+
T Consensus 410 ~k-----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 410 NK-----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Cc-----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 43 58899999999999987653 34455678899999999 5568999999999999999
Q ss_pred CCCee
Q 010777 459 KEGKI 463 (501)
Q Consensus 459 ~~~~~ 463 (501)
.++-.
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 87643
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.5e-34 Score=241.73 Aligned_cols=283 Identities=24% Similarity=0.362 Sum_probs=249.4
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee---EeecCCCCCEEEEEecCC-CCEEEEEecCCeEEEEeC
Q 010777 207 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV 282 (501)
Q Consensus 207 ~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~---~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~i~iwd~ 282 (501)
.+.+|.+.|.+++|+.+|..|++|+.|+++++|++..... ....+|.+.|-.++|+|. .+.|++++.|++|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 4456778899999999999999999999999999876422 245789999999999875 468999999999999999
Q ss_pred CCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEE
Q 010777 283 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 362 (501)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~i 362 (501)
+.+++........+.+...-++++..++.+..|..|...+.++.+++..+. ..-.++-+.|+.++.+|+....-|+|.|
T Consensus 95 r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 95 RSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred ccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEE
Confidence 999999888877777766666778889999999999999998877665443 3446788999988888888888899999
Q ss_pred EeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCC
Q 010777 363 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 442 (501)
Q Consensus 363 wd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 442 (501)
.....-+++.++++|...+.+|.|+|+|. ++|+|+.|-.+.+||+...-++..+.-+.-||..|+||.||+
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~Gr---------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGR---------YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCc---------eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 99999999999999999999999999997 899999999999999998888889998999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECC---------CeEEEEEe
Q 010777 443 YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---------HTVCVLDF 499 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d---------~~v~v~~~ 499 (501)
+||+||.|..|-|=++++|..+..++..+..+.|+|+|....||.+..| |+|++|.+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 9999999999999999999999999999999999999999999987654 56777754
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.6e-35 Score=258.32 Aligned_cols=246 Identities=26% Similarity=0.475 Sum_probs=227.4
Q ss_pred ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC-ceEEEecCCCeEEEEE
Q 010777 244 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCK 322 (501)
Q Consensus 244 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~ 322 (501)
++...+.+|.+-|.++++.|.+.+|++|++|++++|||+.++.+..++.+|...+..+.+.+. -.+.+++.|+.|.-||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 344567899999999999999999999999999999999999999999999999988888654 4567889999999999
Q ss_pred cCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEE
Q 010777 323 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 402 (501)
Q Consensus 323 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l 402 (501)
+..++.|+.|.||-+.|.|++.+|.-..|+||+.|.++||||+++...++.+.+|..+|.++.+.|... .+
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp---------qv 292 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP---------QV 292 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC---------ce
Confidence 999999999999999999999999999999999999999999999999999999999999999987654 48
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC-EEEEEECCC
Q 010777 403 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKE 481 (501)
Q Consensus 403 ~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~-i~~~~ws~~ 481 (501)
++||.|++|++||++.|+...++..|...|.+++.+|....+|++|.|. |+-|++..|..+..+.++.. |++++.+.|
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccC
Confidence 8999999999999999999999999999999999999999999999885 99999999999888877554 789999888
Q ss_pred CCEEEEEECCCeEEEEEee
Q 010777 482 GDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 482 g~~la~~~~d~~v~v~~~~ 500 (501)
| ++++|+.+|.+.+||++
T Consensus 372 ~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 372 G-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred c-eEEEcCCceEEEEEecC
Confidence 7 88999999999999986
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-34 Score=256.28 Aligned_cols=279 Identities=27% Similarity=0.468 Sum_probs=234.8
Q ss_pred CCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC---CEE
Q 010777 151 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---TLL 227 (501)
Q Consensus 151 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~---~~l 227 (501)
.|.+.|.++... +++++||+.||.+++||.... ..+. ..+|+.+|.+++|.... ..|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--------------~~~~----~~Ght~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--------------SIKT----IVGHTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc--------------eEEE----EecCCcceeeeEEEecCCccceE
Confidence 388999999877 789999999999999997532 1122 23467888888885433 359
Q ss_pred EEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC------------------
Q 010777 228 ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------------------ 284 (501)
Q Consensus 228 ~sg~~dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~------------------ 284 (501)
++++.|.++++|..+.. ......||+.+|-++...++|..+++||.|.+|+||+..+
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999986532 1123349999999999999999999999999999999321
Q ss_pred -------cceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCC
Q 010777 285 -------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 357 (501)
Q Consensus 285 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D 357 (501)
+..+..+.+|..+|.++-|.+...+.+++.|.+|+.||+..+..+..+.+ ...++|+.++|..++|++|+.|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC
Confidence 12344678899999999999998999999999999999999887776653 4568999999999999999999
Q ss_pred CeEEEEeCCCCc---eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEeeCCCCCeE
Q 010777 358 VTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVY 433 (501)
Q Consensus 358 g~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~ 433 (501)
..||+||.+++. ..+++.+|...|.++.|+|... ++|++|+.|+++++||+++.+ +++.+.+|...|.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--------~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--------FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL 393 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--------eEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence 999999998653 3577889999999999999764 589999999999999999887 9999999999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 434 SLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 434 ~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
++.|+ .+.+|++||.|++|+|+...
T Consensus 394 ~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEecc-CCceEEeccCcceEEEeccc
Confidence 99997 56799999999999998643
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-34 Score=272.39 Aligned_cols=294 Identities=22% Similarity=0.387 Sum_probs=249.2
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
..+.||...|.+++||.+...++||+. +.|+||+..+.++..+.. ...+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~-------------------~~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT-------------------CGYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec-------------------cccEEEEEecCCCce
Confidence 456799999999999999999998865 679999988765432211 235889999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 227 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
+++|...|.+.++|... ....++..|.++|++++.+|++..+++||.|++|++||..-.. ..
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~---~~-------------- 489 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVV---SV-------------- 489 (888)
T ss_pred EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEe---cc--------------
Confidence 99999999999999764 4555678999999999999999999999999999999864210 00
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEE
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 385 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 385 (501)
.+... ++..+...+ ++ .-...|.|+.+||||++||.+--|.+++||-+.+-++.-++-+|.-||.++.
T Consensus 490 ------~gt~~--k~lsl~~~r---tL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 490 ------PGTQK--KVLSLKHTR---TL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred ------Ccccc--eeeeeccce---EE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 00000 001111111 11 1246799999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 010777 386 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 465 (501)
Q Consensus 386 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~ 465 (501)
.+|++. +++|||.|.+|++|-+.-|.|-..+-+|...|.++.|-|...++.|+|.|+.|+-||-...+.++
T Consensus 558 IS~DSk---------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 558 ISPDSK---------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred ccCCcC---------eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence 999987 89999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEecCC-CEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 466 TYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 466 ~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
.+.++. .|++++.+|+|.++++++.|.+|++|.
T Consensus 629 ~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 629 KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 988764 599999999999999999999999995
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=256.75 Aligned_cols=253 Identities=28% Similarity=0.467 Sum_probs=232.3
Q ss_pred EECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC-CceEEEecCCCe
Q 010777 239 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNM 317 (501)
Q Consensus 239 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ 317 (501)
|-....+...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+.+|...+.++.|.. ...+++++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 5444456667788999999999999999999999999999999999999999999999999999975 456788899999
Q ss_pred EEEEEcCC-CcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCC
Q 010777 318 IYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 396 (501)
Q Consensus 318 i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~ 396 (501)
+.+|+..+ ..+++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++-++.+|.+|...+..++...+|.
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt----- 248 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT----- 248 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-----
Confidence 99999877 567788889999999999999999999999999999999999999999999999999999998886
Q ss_pred CCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCC---------------CCEEEEEeCCCcEEEEeCCCC
Q 010777 397 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT---------------GEYLASGSLDKSMHIWSLKEG 461 (501)
Q Consensus 397 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd---------------g~~lasgs~Dg~i~iw~~~~~ 461 (501)
++|+++.|.+|++|-+.++.+...++.|.-+|.+++|.|. +++++++|.|++|++||+.+|
T Consensus 249 ----i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 249 ----IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred ----EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 8999999999999999999999999999999999999763 259999999999999999999
Q ss_pred eeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 462 KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 462 ~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.++.++.++. .|.+++|+|.|++|++|..|++|+|||++
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9999998765 59999999999999999999999999986
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-34 Score=277.26 Aligned_cols=279 Identities=24% Similarity=0.394 Sum_probs=245.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeE
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 289 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 289 (501)
.+..|..++|+|.-.+++++-..|.|++||.. +.+...|..|.+||.++.|||.+..|+||+.|..|++|+..+..+.-
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 35668899999999999999999999999976 45566889999999999999999999999999999999999999999
Q ss_pred eeeeccCCeEEEecCCCc-eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010777 290 QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 368 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~ 368 (501)
++.+|..-+..+.|+... -++++|+|.+|++|+..+.+++..+.||...|.|..|+|...+++|+|-|.+|||||+..-
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 999999999999997654 5678899999999999999999999999999999999999999999999999999997421
Q ss_pred c-----------------------------eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 010777 369 K-----------------------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 419 (501)
Q Consensus 369 ~-----------------------------~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 419 (501)
+ .-+.+.+|...|.-++|+|.-. +++||+.|..|++|.+...
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp---------liVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc---------eEEecCCcceeeEEEeccc
Confidence 0 0123567888888999998765 8999999999999998644
Q ss_pred e--EEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCEEEEEECCCCCEEEEEECCCeEEE
Q 010777 420 K--LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCV 496 (501)
Q Consensus 420 ~--~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~g~~la~~~~d~~v~v 496 (501)
+ .+-+..||...|.++-|+|.-.+|+|.|.|++|+|||....+.++++.. +...+.++-+|..+.+|+|..+| +.|
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~V 317 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIV 317 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEE
Confidence 3 2445789999999999999999999999999999999999999999864 66799999999999999988776 445
Q ss_pred EEe
Q 010777 497 LDF 499 (501)
Q Consensus 497 ~~~ 499 (501)
|-+
T Consensus 318 Fkl 320 (1202)
T KOG0292|consen 318 FKL 320 (1202)
T ss_pred EEE
Confidence 543
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=252.58 Aligned_cols=289 Identities=20% Similarity=0.354 Sum_probs=240.3
Q ss_pred CCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 010777 151 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 230 (501)
Q Consensus 151 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 230 (501)
|.++.+.|..|||||++|+|||.||.|-+|++.+|+..+.....+-. ..--+..+|.|++||.|..++++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~fMMmd~aVlci~FSRDsEMlAsG 281 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------NFMMMDDAVLCISFSRDSEMLASG 281 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------ceeecccceEEEeecccHHHhhcc
Confidence 56677899999999999999999999999999988754433221111 111235789999999999999999
Q ss_pred eCCCeEEEEECC-CceeEeec-CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCce
Q 010777 231 SYDGQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 308 (501)
Q Consensus 231 ~~dg~i~iw~~~-~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (501)
+.||.|+||.+. +.+...|. .|+..|+++.|+.++..+++++.|.++++.-+++++
T Consensus 282 sqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK---------------------- 339 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK---------------------- 339 (508)
T ss_pred CcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch----------------------
Confidence 999999999975 45555564 799999999999999999999999999998776654
Q ss_pred EEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccC--CCCEEEEEE
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIRW 386 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~ 386 (501)
.++.|+||.+.|+.+.|.++|..+++++.||+|++|+.++..++.+++.. .-+|.++..
T Consensus 340 -------------------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~ 400 (508)
T KOG0275|consen 340 -------------------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL 400 (508)
T ss_pred -------------------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence 45678899999999999999999999999999999999999999888754 345677766
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCC---CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
-|... ..++.|...++|.|.++. |+.+.++... .+...+...||-|.|+.+.+.|+.++.|.+.+|++
T Consensus 401 ~PKnp--------eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 401 LPKNP--------EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred cCCCC--------ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 66543 246678888999999986 7777777532 24456678899999999999999999999999999
Q ss_pred EEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 464 VKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 464 ~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
..+++.+. .+..++-+|.-+.||+-+.||.+.+|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 98887644 588999999999999999999999883
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.6e-33 Score=265.51 Aligned_cols=320 Identities=26% Similarity=0.369 Sum_probs=243.8
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
+..|+|++-+|+.-+||.|-.||.|+||++.+... .-..++|...|+++.|...|..|+|||.
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-----------------~~tfngHK~AVt~l~fd~~G~rlaSGsk 127 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-----------------LITFNGHKAAVTTLKFDKIGTRLASGSK 127 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCce-----------------eeeecccccceEEEEEcccCceEeecCC
Confidence 35899999999999999999999999999875421 1123457889999999999999999999
Q ss_pred CCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE
Q 010777 233 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 233 dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
|+.|.+||+-++ -...+.+|+..|+..-|....+++++.|.|+.|++||+.+..+..+.-.|.+.+..+.+.. ..+++
T Consensus 128 Dt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt 206 (888)
T KOG0306|consen 128 DTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVT 206 (888)
T ss_pred CccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-ceEEE
Confidence 999999997554 4567899999999999998889999999999999999999888777766666555554443 33344
Q ss_pred ecCCCeEEEEEcC-------------------------------------------------------------------
Q 010777 312 SSTDNMIYVCKIG------------------------------------------------------------------- 324 (501)
Q Consensus 312 ~~~d~~i~~~~~~------------------------------------------------------------------- 324 (501)
++.|..+.+|++.
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence 4444444444430
Q ss_pred ------------------------------------------------------------------CCcce---------
Q 010777 325 ------------------------------------------------------------------ENRPI--------- 329 (501)
Q Consensus 325 ------------------------------------------------------------------~~~~~--------- 329 (501)
.....
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~ 366 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN 366 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence 00000
Q ss_pred eeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------------------------------
Q 010777 330 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--------------------------------------- 370 (501)
Q Consensus 330 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~--------------------------------------- 370 (501)
..+.||...|.+++++.+...++||+. +.|+||+..+.++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 123466677777777766666666543 4677776665443
Q ss_pred -eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-----C--eEEEEee-----CCCCCeEEEEE
Q 010777 371 -VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-----G--KLLYSLN-----GHREPVYSLAF 437 (501)
Q Consensus 371 -~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-----~--~~~~~~~-----~h~~~v~~l~~ 437 (501)
+.++++|.+.+++++.+|++. .+++||.|.+|++||..- | +.+..+. .....|.|+++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~---------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~ 516 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNK---------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV 516 (888)
T ss_pred hhhhhhccccceeeeeecCCCC---------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence 333467888899999999987 588999999999999631 1 1112221 12457999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 438 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 438 spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
||||++||.+=.|++|+||-+.+-+..-++.++. +|.++..|||++.+++|+.|++|.||.+.
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 9999999999999999999999988877766654 79999999999999999999999999764
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.6e-33 Score=277.14 Aligned_cols=240 Identities=40% Similarity=0.690 Sum_probs=215.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCccee
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 288 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 288 (501)
...|.++.|+++|+++++++.++.+++|+.... ....+.+|...|..++|+|++.++++|+.|++++|||+...
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--- 235 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--- 235 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence 578999999999999999999999999998432 34566889999999999999999999999999999998322
Q ss_pred EeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010777 289 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 368 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~ 368 (501)
...++++.||...|++++|+|+++++++|+.|++|+|||++++
T Consensus 236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 1235678899999999999999999999999999999999999
Q ss_pred ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEeeCCCCC--eEEEEECCCCCEE
Q 010777 369 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP--VYSLAFSPTGEYL 444 (501)
Q Consensus 369 ~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~--v~~l~~spdg~~l 444 (501)
+++..+.+|...|.+++|++++. +|++++.|+.|+|||+.++. ++..+.++..+ ++++.|+|++.+|
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGN---------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCC---------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 99999999999999999999997 78899999999999999999 56777777655 9999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEEecCC----CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 445 ASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 445 asgs~Dg~i~iw~~~~~~~~~~~~~~~----~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
++++.|+.+++|++..+..+..+.++. .+++...++.|.++.+|+.|+.|++||+.
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999999999999999999888886642 45666778899999999999999999974
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=268.61 Aligned_cols=284 Identities=21% Similarity=0.380 Sum_probs=246.2
Q ss_pred ccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 010777 149 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 228 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 228 (501)
+..-+..|-.++|||...+++++=-.|.|++||..=+. +..+..+|.++|..++|+|+..+|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------li~rFdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------LIDRFDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------HHhhhhccCCccceeeecCCCCeEE
Confidence 44566789999999999999999999999999975332 2334567889999999999999999
Q ss_pred EEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC-C
Q 010777 229 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 306 (501)
Q Consensus 229 sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~ 306 (501)
|||.|-.|+||+... .+..++.+|-+.|..+.||+.-.+++|+|.|.||+||+..++.++..+.+|.--|++..|++ .
T Consensus 68 SGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred ecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 999999999999764 45668899999999999999999999999999999999999999999999999999999987 6
Q ss_pred ceEEEecCCCeEEEEEcCCCc-----------------------------ceeeecCCCCceeEEEEcCCCCEEEEEeCC
Q 010777 307 VSFATSSTDNMIYVCKIGENR-----------------------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDD 357 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D 357 (501)
..++++|.|.+|++||+..-+ .-..+.||...|+-++|+|.-.+|+||++|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 678899999999999985310 113467999999999999999999999999
Q ss_pred CeEEEEeCCCCce--eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEE
Q 010777 358 VTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 435 (501)
Q Consensus 358 g~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 435 (501)
..|++|.+...+. +-+.++|...|.++-|+|... +++|.|.|++||+||+...+.+++++-..+..+.+
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~---------lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD---------LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccc---------eeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence 9999999875542 567899999999999999653 78899999999999999999999998777889999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCC
Q 010777 436 AFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 436 ~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
+-+|..+++|+| +|+-+.||.+.
T Consensus 299 aahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 299 AAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred EecCCcceeeee-cCCceEEEEEc
Confidence 999999987765 55556666654
No 55
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4.3e-33 Score=279.37 Aligned_cols=294 Identities=27% Similarity=0.466 Sum_probs=232.4
Q ss_pred CccceeEEEECCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 010777 152 HTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 229 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 229 (501)
+...|.++..||+|..++||| .|+.++||....-.. .......+ +.........|.+.|+|+.|++||++||+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD--EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc--hhhhhhcc---cchhheeeccccCceeEEEECCCCCeEee
Confidence 456799999999999999999 999999998642110 00000000 11111223456789999999999999999
Q ss_pred EeCCCeEEEEECCC-------------------ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEe
Q 010777 230 GSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 290 (501)
Q Consensus 230 g~~dg~i~iw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 290 (501)
|+.|+.|.||.... .....+.+|.+.|..++|+|++.+|++++.|++|.|||.++.+.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~--- 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL--- 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee---
Confidence 99999999998651 13457889999999999999999999999999999999876532
Q ss_pred eeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 010777 291 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 370 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~ 370 (501)
+.++.+|.+.|-.+.|.|-|++||+-+.|++|+||++.....
T Consensus 164 --------------------------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 164 --------------------------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred --------------------------------------eeeeecccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence 456778999999999999999999999999999999777666
Q ss_pred eeecccCC------CCEEEEEEcCCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCC
Q 010777 371 VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 371 ~~~~~~~~------~~v~~i~~~p~g~~~~~~~~~~~l~sgs----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 440 (501)
.+.+..+- ..++.+.|+|+|. +|++.. .-.++.|.+-.+.+.-..+-||.+++.+++|+|-
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~---------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGH---------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcC---------eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 66655432 3467889999997 455432 2346888887777777889999999999999972
Q ss_pred ------C-------C----EEEEEeCCCcEEEEeCCCCeeEEEEec--CCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 441 ------G-------E----YLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 441 ------g-------~----~lasgs~Dg~i~iw~~~~~~~~~~~~~--~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
. . .+|+||.|++|-||....-+.+..... +..|.+++|+|||-.|.+|+.||+|.++.|.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 1 1 578899999999999876665444322 4579999999999999999999999999874
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=233.82 Aligned_cols=236 Identities=32% Similarity=0.635 Sum_probs=199.2
Q ss_pred cCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCC-c---eeEee-cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCC
Q 010777 210 EKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-D---LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 283 (501)
Q Consensus 210 ~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~-~---~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~ 283 (501)
+|...|..++|+|- |..|+|||.|+.||||+..+ . ++..+ .+|+..|.+++|+|.|++|++||-|.++.||.-.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 34567999999998 89999999999999999874 2 22222 4799999999999999999999999999999644
Q ss_pred CcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEE
Q 010777 284 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 363 (501)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iw 363 (501)
.+++ ..+.++.||..+|.|++|+++|.+||||+.|..|-||
T Consensus 92 ~~ef---------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 92 DGEF---------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred CCce---------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 3321 2355788999999999999999999999999999999
Q ss_pred eCCCC---ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC---CCeEEEEeeCCCCCeEEEEE
Q 010777 364 NMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAF 437 (501)
Q Consensus 364 d~~~~---~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~ 437 (501)
....+ .++..++.|...|..+.|+|... +|+++|.|++|++|.-. .-.++.++.+|...|.+++|
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHPt~d---------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F 203 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTED---------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF 203 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcCCcc---------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe
Confidence 88744 45677889999999999999764 89999999999999865 34688999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 438 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 438 spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
+|.|..|++++.|++|+||-..+. -+......++.++|. ...||+++.|+.|.||-
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 999999999999999999986521 111223568999998 45899999999999884
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.7e-33 Score=246.82 Aligned_cols=274 Identities=30% Similarity=0.514 Sum_probs=229.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCC---EEEEEecCCeEEEEeCCCcce
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD---YLLTGSCDKTAIVWDVKTEEW 287 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~D~~i~iwd~~~~~~ 287 (501)
|..-|.++... ++++++|++||.+++|+..|.....+.+|.++|.+++|.-.+. .|+++|.|.++++|-.+.++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 34456665555 6899999999999999999999999999999999888864443 599999999999998776543
Q ss_pred e----EeeeeccCCeEEEec-CCCceEEEecCCCeEEEEEcC-------------------------CCcceeeecCCCC
Q 010777 288 K----QQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIG-------------------------ENRPIKTFAGHQG 337 (501)
Q Consensus 288 ~----~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~-------------------------~~~~~~~~~~h~~ 337 (501)
. ....+|..+|-++.. ....+|++++-|.+|.+|+.. ...|+.++.||+.
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 2 333488899999885 567899999999999999921 1236778899999
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 010777 338 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 417 (501)
Q Consensus 338 ~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 417 (501)
+|.+|.|++ ...+.++|.|.+|+.||+.++....++.. ...+.++.++|... +|++|+.|..||+||.+
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~---------Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK---------LLASGSSDRHIRLWDPR 330 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc---------eeeecCCCCceeecCCC
Confidence 999999997 67788999999999999999988877654 46789999988664 89999999999999998
Q ss_pred CCe---EEEEeeCCCCCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe-eEEEEec-CCCEEEEEECCCCCEEEEEECC
Q 010777 418 LGK---LLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK-IVKTYTG-NGGIFEVCWNKEGDKIAACFAN 491 (501)
Q Consensus 418 ~~~---~~~~~~~h~~~v~~l~~spdg~-~lasgs~Dg~i~iw~~~~~~-~~~~~~~-~~~i~~~~ws~~g~~la~~~~d 491 (501)
++. ..+++.+|...|.++.|+|... .|++||.|+++++||++.-+ .+..+.+ +..|+++.|+.. ..|++|+.|
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD 409 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGAD 409 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCc
Confidence 753 4578999999999999999764 57899999999999999876 5666655 456999999754 589999999
Q ss_pred CeEEEEE
Q 010777 492 HTVCVLD 498 (501)
Q Consensus 492 ~~v~v~~ 498 (501)
.+|+++-
T Consensus 410 ~~l~i~~ 416 (423)
T KOG0313|consen 410 NKLRIFK 416 (423)
T ss_pred ceEEEec
Confidence 9999873
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=232.23 Aligned_cols=277 Identities=23% Similarity=0.435 Sum_probs=233.3
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCC
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT 225 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~ 225 (501)
..+++|...|.+++|+.+|..|++|+.|+++++|++...... ......+|...|-.++|+| ...
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCCc
Confidence 456789999999999999999999999999999998644211 1123345677899999987 567
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 226 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
.|++++.|.+|++||... +....+....+. .-+.|+|+|.+++.++.|..|.+.|.++.+.....++... +..+.|.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~ 156 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN 156 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec
Confidence 899999999999999764 444444433344 4578999999999999999999999998877665544332 3445553
Q ss_pred -CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEE
Q 010777 305 -NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 383 (501)
Q Consensus 305 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~ 383 (501)
.+..|......|.|.+.....-+|++.+.+|.....||.|+|+|++||+|+.|-.+.+||+..--+++.+..+.-+|.+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT 236 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence 4556777777899999999999999999999999999999999999999999999999999988888889889999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 450 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D 450 (501)
+.|+.+|. +||+||.|..|-|=++++|..++.+. +.++-..|+|+|...+||-+..|
T Consensus 237 lSFS~dg~---------~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGR---------MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEeccCcc---------eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999997 89999999999999999999999998 78899999999999999987765
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=250.52 Aligned_cols=280 Identities=24% Similarity=0.404 Sum_probs=232.4
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC
Q 010777 209 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 284 (501)
Q Consensus 209 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~ 284 (501)
..|...|..+.||++|+||||++.|.+..||.+.. ++..++.+|..+|.-+.|+|+.+||++|+.|..+++||+.+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 35678899999999999999999999999998643 34568899999999999999999999999999999999999
Q ss_pred cceeEeeeec-cCCeEEEec-CCCceEEEecCCCeEEEEEcCCCcceeeecCCC-CceeEEEEcCCCCEEEEEeCCCeEE
Q 010777 285 EEWKQQFEFH-SGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAK 361 (501)
Q Consensus 285 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~i~ 361 (501)
+.....+... ...+.+..| .+...|++++.|+.+..|++..+. +..+.+-. ..|.+++..+||+++++.+.|..|+
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 9987777544 345566666 466789999999999999997654 23333332 4588999999999999999999999
Q ss_pred EEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCC--eEEEEECC
Q 010777 362 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSP 439 (501)
Q Consensus 362 iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~sp 439 (501)
+|+..+...+. +.....+++++..|.++. ++++.-.+..|++||++..+.+..+.||+.. |..-+|.-
T Consensus 380 l~~~e~~~dr~-lise~~~its~~iS~d~k---------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 380 LYNREARVDRG-LISEEQPITSFSISKDGK---------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred eechhhhhhhc-cccccCceeEEEEcCCCc---------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 99976654433 233456899999998886 5666667899999999988888888898754 33345643
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC-EEEEEECCCC-CEEEEEECCCeEEEEEe
Q 010777 440 -TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEG-DKIAACFANHTVCVLDF 499 (501)
Q Consensus 440 -dg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~-i~~~~ws~~g-~~la~~~~d~~v~v~~~ 499 (501)
+..++|+||.|+.|+||+..+|+++.++.++.. |++|+|+|.. .++|+|+.||+|++|..
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 448999999999999999999999999998764 9999999976 58999999999999965
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-31 Score=226.97 Aligned_cols=280 Identities=24% Similarity=0.384 Sum_probs=231.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCccee
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 288 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 288 (501)
+|..+++.+.++.+|.+|+|++.|.++.||-. +++..-++.+|+++|+++...-+..++++|++|.++++||+.+++.+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL 87 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence 46788999999999999999999999999975 88888999999999999999999999999999999999999999988
Q ss_pred EeeeeccCCeEEEecCCCceEEEec------CCCeEEEEEcC-------CCcceeeecCCCCceeEEEEcCCCCEEEEEe
Q 010777 289 QQFEFHSGPTLDVDWRNNVSFATSS------TDNMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 355 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~i~~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s 355 (501)
.++.. ..++..++|.....++..+ ..+.|.+++++ ...|+..+..+...++.+-|.|-+++|++|.
T Consensus 88 a~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 88 ATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 88765 3456667775443333332 23568888887 4567777888889999999999999999999
Q ss_pred CCCeEEEEeCCCC-ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEE
Q 010777 356 DDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 434 (501)
Q Consensus 356 ~Dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 434 (501)
.||.|.+||++++ ..+...+.|...|+.++++|+.. +++++|.|.+-++||.++..++.++. ...||++
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T---------~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~ 236 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT---------YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNT 236 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcc---------eEEecccCccceeeeccceeeEEEee-ecccccc
Confidence 9999999999997 45566678999999999999986 89999999999999999999988887 4579999
Q ss_pred EEECCCCCEEEEEeCCCc--EEEEeCCCCee------------EEEEec-CCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 435 LAFSPTGEYLASGSLDKS--MHIWSLKEGKI------------VKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 435 l~~spdg~~lasgs~Dg~--i~iw~~~~~~~------------~~~~~~-~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.+++|.-.+++.||...- |.-=+.+.|+. +..+.+ -++|++++|||+|+..++|+.||.|+|+.+
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 999998888887764422 32223333432 122233 367999999999999999999999999876
Q ss_pred e
Q 010777 500 R 500 (501)
Q Consensus 500 ~ 500 (501)
.
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 4
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=266.62 Aligned_cols=292 Identities=21% Similarity=0.373 Sum_probs=206.9
Q ss_pred CCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE--ECCCCCEEE
Q 010777 151 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD--WNGEGTLLA 228 (501)
Q Consensus 151 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~s~~~~~l~ 228 (501)
+|.+.|.|+.||+||+||||||.|+.|+||.+.............-.+.. .... .....++..-. ........-
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~--~~~~--~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYF--EYNA--NSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhh--hhhh--ccccCccccccccccccccccc
Confidence 79999999999999999999999999999998653211100000000000 0000 00000010000 000011111
Q ss_pred EEeCCCeEEE----EECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 229 TGSYDGQARI----WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 229 sg~~dg~i~i----w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
.+.....+.+ +-......+.+.+|.+.|..|.|+.+ ++|+++|+|+|||+|++...+++..|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F------------- 406 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF------------- 406 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-------------
Confidence 1222222222 22334567789999999999999976 58999999999999999876654433
Q ss_pred CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEE
Q 010777 305 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 383 (501)
Q Consensus 305 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~ 383 (501)
.|...|+||+|+| |.++|++|+-||.||||++...+.+.- .....-|++
T Consensus 407 -----------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITA 456 (712)
T KOG0283|consen 407 -----------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITA 456 (712)
T ss_pred -----------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhhee
Confidence 3888999999999 678999999999999999987766543 333478999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee--CC------CCCeEEEEECCCCC-EEEEEeCCCcEE
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GH------REPVYSLAFSPTGE-YLASGSLDKSMH 454 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h------~~~v~~l~~spdg~-~lasgs~Dg~i~ 454 (501)
++|.|+|. +.+.|+.+|.+++|+....+...... -| ...|+.+.|.|... .|++.+.|..|+
T Consensus 457 vcy~PdGk---------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR 527 (712)
T KOG0283|consen 457 VCYSPDGK---------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR 527 (712)
T ss_pred EEeccCCc---------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence 99999997 67789999999999998776654432 11 12799999998653 466668899999
Q ss_pred EEeCCCCeeEEEEecCC---CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 455 IWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 455 iw~~~~~~~~~~~~~~~---~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
|||.++..++..|.+.. .=...+|+.||++|++++.|..|+||+.
T Consensus 528 I~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 528 IYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred EEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 99998888887776532 2356789999999999999999999986
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=265.70 Aligned_cols=271 Identities=30% Similarity=0.513 Sum_probs=241.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEe-ecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeE
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 289 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 289 (501)
...+.+..|. ..++++++.+++|++|+... ..... +.+|.+.|++++|...+..|++|+.|+++++||..++.+..
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 4567888888 56899999999999999754 44444 89999999999998878899999999999999999999999
Q ss_pred eeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 010777 290 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 369 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~ 369 (501)
.+.+|...+.+++... ..+++++.|.+|++|++.++..+..+.+|.+.|+++.++ +.++++|+.|++|++||+.+++
T Consensus 286 ~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence 9999999888776543 346668999999999999999999999999999999997 8899999999999999999999
Q ss_pred eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEe
Q 010777 370 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS 448 (501)
Q Consensus 370 ~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs 448 (501)
+++++.+|...|+++.+.+. . .+++|+.|++|++||+++. +++.++.+|..-|..+.+ .+++|++++
T Consensus 363 cl~sl~gH~~~V~sl~~~~~-~---------~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE-N---------RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred eeeeecCCcceEEEEEecCc-c---------eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence 99999999999999988663 1 6899999999999999999 999999999998877765 567999999
Q ss_pred CCCcEEEEeCCCCeeEEEEecC--CCEEEEEECCCCCEEEEEECCCeEEEEEeeC
Q 010777 449 LDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDFRM 501 (501)
Q Consensus 449 ~Dg~i~iw~~~~~~~~~~~~~~--~~i~~~~ws~~g~~la~~~~d~~v~v~~~~~ 501 (501)
.|++|++||..+++.++++.+. +.+..+++. -..+++++.++++.+||+++
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 9999999999999999999873 678888886 45788889999999999974
No 63
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-32 Score=256.74 Aligned_cols=245 Identities=22% Similarity=0.380 Sum_probs=225.6
Q ss_pred EeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC-CCceEEEecCCCeEEEEEcCC
Q 010777 247 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE 325 (501)
Q Consensus 247 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~ 325 (501)
..+..+...|.++.|||...+++++-..|.|.|||.++...++.+....-|+.+..|. ...-++++++|..|++++..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 3456688999999999999999999999999999999999999999888888887775 455678999999999999999
Q ss_pred CcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEE
Q 010777 326 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 404 (501)
Q Consensus 326 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~s 404 (501)
...++.|.+|...|.|++.||..++++|+|+|.+|++||+..+ .+.+++.+|..-|..++|.|... ..+||
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------ntFaS 158 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------NTFAS 158 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------cceee
Confidence 9999999999999999999999999999999999999999754 67889999999999999999765 36899
Q ss_pred EeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCC
Q 010777 405 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKE 481 (501)
Q Consensus 405 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd--g~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~ 481 (501)
+|-|++|++|.+....+.+++.+|...|+||.|-+- .+||+||+.|.+|+|||..+..+++++.++. .|..++|+|.
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCC
Confidence 999999999999999999999999999999999764 4799999999999999999999999999875 4999999999
Q ss_pred CCEEEEEECCCeEEEEEe
Q 010777 482 GDKIAACFANHTVCVLDF 499 (501)
Q Consensus 482 g~~la~~~~d~~v~v~~~ 499 (501)
=-.+++|+.||+|++|+-
T Consensus 239 lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CcEEEEecCCccEEEecC
Confidence 999999999999999974
No 64
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.6e-30 Score=211.93 Aligned_cols=297 Identities=25% Similarity=0.371 Sum_probs=237.0
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
.+..|.+++|+|.|.+.+.||...+.||--...-.........+........ .+...|.+.|+|.+|||+|+++++|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~--kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC--KRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe--eeccccCccEEEEEecCccCeEEecC
Confidence 4567999999999999999999999998754432111111111111111110 11223567899999999999999999
Q ss_pred CCCeEEEEECCCc------eeEeecCCCCCEEEEEecCC----CCEEEEEe-cCCeEEEEeCCCcceeEeeeeccCCeEE
Q 010777 232 YDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKK----GDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGPTLD 300 (501)
Q Consensus 232 ~dg~i~iw~~~~~------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (501)
.|.+|++.-.+.. ....|.-|.+.|..++|-.+ +..|++++ .|..|.+-|..+++-.+.+..|.+.+++
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 9999999765432 23467779999999999643 34566654 3677777788899888999999999998
Q ss_pred EecCCCceEEEecCCCeEEEEEcCCCcceeeecC--C-----CCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q 010777 301 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--H-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 373 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h-----~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 373 (501)
+-.-++..|++++.|.+|++||++-+..+.++.. | .+.|.+++..|.|++|++|..|....+||++.+++++.
T Consensus 189 lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 189 LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 8766788999999999999999998888777642 2 25689999999999999999999999999999999999
Q ss_pred cccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEeeCCCCCeEEEEECCCCCEEEEEeC
Q 010777 374 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLASGSL 449 (501)
Q Consensus 374 ~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spdg~~lasgs~ 449 (501)
+..|...|.++.|+|.. ++|++||.|..|++-|+... -.+..+..|...+..+.|+|..--+++.|.
T Consensus 269 f~phsadir~vrfsp~a---------~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa 339 (350)
T KOG0641|consen 269 FHPHSADIRCVRFSPGA---------HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA 339 (350)
T ss_pred eCCCccceeEEEeCCCc---------eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC
Confidence 99999999999999976 48999999999999998632 234556679999999999999988999999
Q ss_pred CCcEEEEeCC
Q 010777 450 DKSMHIWSLK 459 (501)
Q Consensus 450 Dg~i~iw~~~ 459 (501)
|.++.+|-+.
T Consensus 340 dkt~tlwa~~ 349 (350)
T KOG0641|consen 340 DKTATLWALN 349 (350)
T ss_pred cceEEEeccC
Confidence 9999999763
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.8e-31 Score=262.46 Aligned_cols=285 Identities=29% Similarity=0.477 Sum_probs=248.4
Q ss_pred EccC-CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 148 ILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 148 ~l~~-H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.+.+ |...|.+..|+ +.++++++.|++|++|+..++.. +.....+|.+.|.++++..-+.+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------i~~~l~GH~g~V~~l~~~~~~~~ 263 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------ILTRLVGHFGGVWGLAFPSGGDK 263 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceE----------------EEeeccCCCCCceeEEEecCCCE
Confidence 3444 56778888888 77899999999999999876531 12224456889999999988899
Q ss_pred EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 227 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
+++|+.|.+++|||.. +.+.+++.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+..|.++|.++...
T Consensus 264 lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 9999999999999975 577889999999999987654 578889999999999999999999999999999999988
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeeecccCCCCEEEE
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTI 384 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~v~~i 384 (501)
...+++++.|++|.+|++...+++..+.||.+.|.++.+.+. ..+++|+.|++|++||+.+. +++.++..|...+..+
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL 419 (537)
T ss_pred CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence 667888899999999999999999999999999999988655 88999999999999999999 9999999999888766
Q ss_pred EEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC-CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 385 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 385 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
.+... +|++++.|++|++||...++++..+.+ |...|+.+++. ...+++++.||++++||+++++.
T Consensus 420 ~~~~~-----------~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 420 LLRDN-----------FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccccc-----------eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 65332 789999999999999999999999998 77889999887 46788999999999999999988
Q ss_pred EEEE
Q 010777 464 VKTY 467 (501)
Q Consensus 464 ~~~~ 467 (501)
++.+
T Consensus 487 ~~~l 490 (537)
T KOG0274|consen 487 IRTL 490 (537)
T ss_pred hhhh
Confidence 7755
No 66
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-32 Score=227.60 Aligned_cols=275 Identities=23% Similarity=0.396 Sum_probs=222.3
Q ss_pred EEEEECC--CCCEEEEE------eCCCeEEEEECC-CceeEee--cCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCC
Q 010777 216 TTLDWNG--EGTLLATG------SYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 283 (501)
Q Consensus 216 ~~~~~s~--~~~~l~sg------~~dg~i~iw~~~-~~~~~~~--~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~ 283 (501)
.++.||| .+++.+.+ ...|.+.|-+.. ..-+..+ -.-.+.++.++|++.. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5667777 33332222 235788888875 2222221 2245789999999865 678999999999999964
Q ss_pred C-cceeEeeeeccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC-CCEEEEEeCCCe
Q 010777 284 T-EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVT 359 (501)
Q Consensus 284 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~ 359 (501)
. ...+..+..|...|.+++|. ....|++++-|++|.+|+...+..+++|.||...|...+|+|. .++|+++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 34566778899999999996 4567889999999999999999999999999999999999995 678999999999
Q ss_pred EEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEEC
Q 010777 360 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFS 438 (501)
Q Consensus 360 i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s 438 (501)
+++||++.......+..|...+.++.|+.-.. .+|+||+.|+.||+||+++- .++.++.+|.-.|..|+||
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCC--------cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 99999986544444888999999999986543 58999999999999999865 4688999999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEeCCCCe-eEEEEecCCC-EEEEEECC-CCCEEEEEECCCeEEEEE
Q 010777 439 PTG-EYLASGSLDKSMHIWSLKEGK-IVKTYTGNGG-IFEVCWNK-EGDKIAACFANHTVCVLD 498 (501)
Q Consensus 439 pdg-~~lasgs~Dg~i~iw~~~~~~-~~~~~~~~~~-i~~~~ws~-~g~~la~~~~d~~v~v~~ 498 (501)
|.. ..||++|.|-+++||+...+. ++.++..+.. +..+.||+ ++.++|.++.|+.+.||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 975 689999999999999998553 4555555554 67889998 567999999999999998
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-32 Score=230.62 Aligned_cols=282 Identities=25% Similarity=0.409 Sum_probs=237.8
Q ss_pred EEccCCccceeEEEECC---CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 010777 147 TILEGHTSEVCACAWSP---AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 223 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp---~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 223 (501)
.+..||+.+|-.++||| +|-+|.|++.|+.-.+=+=.+|.. .+...+|.+.|++.+.+.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----------------igtfeghkgavw~~~l~~n 70 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----------------IGTFEGHKGAVWSATLNKN 70 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----------------EEeeeccCcceeeeecCch
Confidence 35679999999999986 678999999998766544333322 2334456789999999999
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 224 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
....++++.|-+.+|||. .+.....| .|+--|.+++|+.+.++|++|+.++.+||||++..+
T Consensus 71 a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~---------------- 133 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK---------------- 133 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCC----------------
Confidence 999999999999999995 45555555 488889999999999999999999999999986532
Q ss_pred cCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEE
Q 010777 303 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 382 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~ 382 (501)
.|...+.+|.+.|..+-|....+.|++.++|++||+||.+++..++++.. ..+|.
T Consensus 134 ------------------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~Vt 188 (334)
T KOG0278|consen 134 ------------------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVT 188 (334)
T ss_pred ------------------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCc
Confidence 34567889999999999998889999999999999999999999988764 46789
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 010777 383 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 462 (501)
Q Consensus 383 ~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~ 462 (501)
++..+++|. +++-...+.|++||..+..++..++- ...|.+.+.+|+..++++|+.|..++.||..+|.
T Consensus 189 SlEvs~dG~----------ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 189 SLEVSQDGR----------ILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred ceeeccCCC----------EEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 999999986 45566678999999998888776652 3458999999999999999999999999999998
Q ss_pred eEEEE-ec-CCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 463 IVKTY-TG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 463 ~~~~~-~~-~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
-+..+ .+ .++|.++.|+|+|...|+|+.||+|++|-
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 77775 33 56799999999999999999999999994
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1e-30 Score=249.65 Aligned_cols=335 Identities=23% Similarity=0.407 Sum_probs=266.2
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
..+.||.+.|+++.|+|.+..|+|+|.|.++.+|...+..- +....-..+...+.........|+|++..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG----------iWv~~vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG----------IWVDVVRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccc----------eEEEEEEeecccccccceeeEEEcCCCCE
Confidence 35679999999999999999999999999999998654321 11111122333344566889999999999
Q ss_pred EEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC--cceeE--eeeeccCCe
Q 010777 227 LATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EEWKQ--QFEFHSGPT 298 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~--~~~~~--~~~~~~~~~ 298 (501)
+++-+..|..++|.... .....+.||.+.|..+.|+|.|.+|++.|.|.|-|++-.-. .+|.. ..+.|....
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 99999999999998433 23345789999999999999999999999999999996541 12222 334566778
Q ss_pred EEEecCC-CceEEEecCCCeEEEEEcCCC--------------------------------cc-----------------
Q 010777 299 LDVDWRN-NVSFATSSTDNMIYVCKIGEN--------------------------------RP----------------- 328 (501)
Q Consensus 299 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~--------------------------------~~----------------- 328 (501)
.++.+.+ +..|+++.+.+.+++++.... ++
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 8888877 888999998888888774210 00
Q ss_pred ---------------------------eeeecCCCCceeEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeeeccc
Q 010777 329 ---------------------------IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLRE 376 (501)
Q Consensus 329 ---------------------------~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~ 376 (501)
+..+.||..+|.+++.+|+++++||++... .|++|+..+...++.+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 012458999999999999999999998754 589999999988889999
Q ss_pred CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE----EEEeeCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010777 377 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKS 452 (501)
Q Consensus 377 ~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~ 452 (501)
|.-.|+.++|+|++. +|++.|.|.++.+|....... ....+.|+.-|++..|+|++.++||+|.|++
T Consensus 571 HsLTVT~l~FSpdg~---------~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGR---------YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred cceEEEEEEECCCCc---------EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence 999999999999997 899999999999998753321 2336789999999999999999999999999
Q ss_pred EEEEeCCCC--eeEE---EEecCCCEEEEEECCC-----CCEEEEEECCCeEEEEEee
Q 010777 453 MHIWSLKEG--KIVK---TYTGNGGIFEVCWNKE-----GDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 453 i~iw~~~~~--~~~~---~~~~~~~i~~~~ws~~-----g~~la~~~~d~~v~v~~~~ 500 (501)
|+||...+. +.+. .......++.++|.|- +..+|+|...|.|.||.++
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999998877 3322 2334567899998773 3488999999999999865
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-31 Score=242.36 Aligned_cols=274 Identities=22% Similarity=0.387 Sum_probs=233.5
Q ss_pred CCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCce-eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeE
Q 010777 212 SKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 289 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~-l~sg~~dg~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 289 (501)
...|++++|||...+ +++.+ .-.+.||+..+.. ...+...+..|+++.|..||..|++|...|.|+++|..+.....
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 467999999995543 33333 3468888876533 33466778899999999999999999999999999988877888
Q ss_pred eeeeccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 010777 290 QFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~ 366 (501)
.+..|+.|+..+.|. .+..|+++++|+.+.+|++.+......+.+|+..|.|.+|+|-. .+++|||.||+||+||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 899999999888875 56788999999999999999888766889999999999999965 579999999999999998
Q ss_pred CC-ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEeeCCCCCeEEEEECCCCCEE
Q 010777 367 QD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYL 444 (501)
Q Consensus 367 ~~-~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spdg~~l 444 (501)
.. ..+.++ .|..+|..+.+-|.|+ ++++++. +.|++||+-+|. .+..+..|...|+|+++..+++.|
T Consensus 185 ~~~~~v~el-nhg~pVe~vl~lpsgs---------~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 185 SLTSRVVEL-NHGCPVESVLALPSGS---------LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred cCCceeEEe-cCCCceeeEEEcCCCC---------EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 77 445554 5889999999999986 6777764 589999998654 455555599999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 445 ASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 445 asgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
++||-|+.|++|++.+.+++..+.-.++|.+++.+|+++.+++|..||.+.+-
T Consensus 254 lS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 99999999999999999999999999999999999999999999999987653
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=242.17 Aligned_cols=280 Identities=23% Similarity=0.366 Sum_probs=216.6
Q ss_pred EEccCCccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 147 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
..|.||.++|.|++=+|.. ..+|||+.||.|+|||+..-.+. + ....|.+.|..|++.. .
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------~----~f~AH~G~V~Gi~v~~--~ 120 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------R----TFKAHEGLVRGICVTQ--T 120 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-------------h----eeecccCceeeEEecc--c
Confidence 4578999999999999986 78999999999999998753321 1 1123456677777766 5
Q ss_pred EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 226 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
.++++|.|.+|+.|..++....++.+ .+.++++.-+..++.++||+. .|-|||.+.
T Consensus 121 ~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R--------------------- 176 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQR--------------------- 176 (433)
T ss_pred ceEEecCCcceeeeeccCCcceeeec-cccccccccccccccccccCc--eeeeccccc---------------------
Confidence 67788888888888877765555443 344566666666666777764 466777643
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEE
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 384 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i 384 (501)
..|+..+.-....|.++.|+|... .|++|+.|+.|.+||+++..+++.+.. .-....|
T Consensus 177 --------------------~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~I 235 (433)
T KOG0268|consen 177 --------------------DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTI 235 (433)
T ss_pred --------------------CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccce
Confidence 334444444455688999999875 577888999999999999988776543 2345789
Q ss_pred EEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 385 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 385 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
+|+|.+- .+.+|+.|.+++.||++.. .++....+|..+|.++.|||.|+-+++||.|.+|+||.+..+..
T Consensus 236 swnPeaf---------nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 236 CWNPEAF---------NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ecCcccc---------ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 9999543 5788999999999999854 46777889999999999999999999999999999999998876
Q ss_pred EEEEec--CCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 464 VKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 464 ~~~~~~--~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
-..+.. ...|+++.||.|.+++++|+.|+.|++|-.
T Consensus 307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 307 RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 666544 346999999999999999999999999964
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-30 Score=249.14 Aligned_cols=272 Identities=24% Similarity=0.452 Sum_probs=233.4
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCceeE-eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeee-
Q 010777 216 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF- 293 (501)
Q Consensus 216 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~- 293 (501)
.-++|+. .+.|+.|. ...|++|+....... ....+...|+++.|+++|.+|++|..+|.|.|||..+......+..
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 3467884 44566654 358999997654433 3333488999999999999999999999999999998888888888
Q ss_pred ccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceee-ecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 010777 294 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 372 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 372 (501)
|...+.++.|. ...+.+++.++.|..++++....+.. +.+|...|+.++|++|+.++|+|+.|+.+.|||.....+..
T Consensus 259 h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 259 HASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred cCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 88999999998 66678899999999999988766555 88999999999999999999999999999999998888888
Q ss_pred ecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEE--e
Q 010777 373 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--S 448 (501)
Q Consensus 373 ~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasg--s 448 (501)
.+..|...|.+++|+|.-.+ +||+|+ .|++|++||..++..+..+.. ...|.+|.|++..+-|+++ -
T Consensus 338 ~~~~H~aAVKA~awcP~q~~--------lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSG--------LLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred EEeccceeeeEeeeCCCccC--------ceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCC
Confidence 99999999999999998653 788864 699999999999999988774 4679999999998666653 3
Q ss_pred CCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 449 LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 449 ~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.++.|.||+..+.+.+..+.+|. .|..++|||||..+++|+.|.++++|++
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 57799999999988888887764 5999999999999999999999999986
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-31 Score=223.50 Aligned_cols=279 Identities=23% Similarity=0.402 Sum_probs=225.9
Q ss_pred eEEEECCC-CCEEE--EEE-----CCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CCEE
Q 010777 157 CACAWSPA-GSLLA--SGS-----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLL 227 (501)
Q Consensus 157 ~~~~~sp~-~~~l~--sgs-----~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l 227 (501)
.++.|||- ..+|| |+. ..|.+.|-++..+..+ .. ...+ .-...+..++|++. ...+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi--------~e--~~s~-----d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI--------QE--CQSY-----DTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe--------EE--EEee-----ecccceeEeeecCCCcceE
Confidence 57889994 33333 322 3678888887533211 11 1111 12456899999985 4688
Q ss_pred EEEeCCCeEEEEECCC--ceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 228 ATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 228 ~sg~~dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
++++.||.++|||+.. ..+..++.|+..|+++.|++.. ..++++|.|++|++|+.....-+++|..|...|....|.
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 8999999999999643 4566788999999999999854 567888999999999999998899999999999888886
Q ss_pred C--CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-eeeecccCCCC
Q 010777 305 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKE 380 (501)
Q Consensus 305 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~ 380 (501)
+ ...|++++.|+++++||++.......+..|..+|.|+.|+. +...|+||+.|+.||+||++.-+ ++..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 4 56899999999999999987655556889999999999986 45678999999999999998654 57788899999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEeC
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd-g~~lasgs~Dg~i~iw~~ 458 (501)
|..++|||... .+||+++.|=++||||...+ ..+.+...|+..|..+.||+- +.++|+++.|+.++||+.
T Consensus 237 VRkvk~Sph~~--------~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 237 VRKVKFSPHHA--------SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEecCcchh--------hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999865 38999999999999998744 455667789999999999984 679999999999999984
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.1e-30 Score=274.12 Aligned_cols=238 Identities=21% Similarity=0.359 Sum_probs=199.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---------eeEeecCCCCCEEEEEecCC-CCEEEEEecCCeEE
Q 010777 209 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAI 278 (501)
Q Consensus 209 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~i~ 278 (501)
..|...|.+++|+|+|.+|++|+.|+.|+||+.... ....+. +...|.+++|+|. +.+|++++.||+|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 346788999999999999999999999999996431 112222 3467899999874 68899999999999
Q ss_pred EEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcC-CCCEEEEEeCC
Q 010777 279 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDD 357 (501)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~D 357 (501)
+||+.++.. +..+.+|.+.|.+++|+| ++.+|+||+.|
T Consensus 559 lWd~~~~~~-----------------------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 559 VWDVARSQL-----------------------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred EEECCCCeE-----------------------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 999876532 334567899999999997 78999999999
Q ss_pred CeEEEEeCCCCceeeecccCCCCEEEEEEcC-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEeeCCCCCeEEE
Q 010777 358 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSL 435 (501)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l 435 (501)
|+|++||++++..+..+..+ ..+.++.|.+ ++. +|++|+.||.|++||+++.+ .+..+.+|...|+++
T Consensus 598 g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~---------~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v 667 (793)
T PLN00181 598 GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR---------SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYV 667 (793)
T ss_pred CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC---------EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEE
Confidence 99999999998888777654 5788999954 443 78999999999999998765 567788999999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCC------eeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 436 AFSPTGEYLASGSLDKSMHIWSLKEG------KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 436 ~~spdg~~lasgs~Dg~i~iw~~~~~------~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.|. ++.+|+++|.|++|++||+..+ +.+.++.++. .+..++|+|+|.+||+|+.|+.|.||+.
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 997 7889999999999999999743 4566776654 4789999999999999999999999985
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.6e-31 Score=228.51 Aligned_cols=304 Identities=23% Similarity=0.413 Sum_probs=237.5
Q ss_pred cCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCC---------CCCCCCCCceEEEEEeeccccccC
Q 010777 141 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTS---------NGGAQNGPLNVLVLKHVKGRTNEK 211 (501)
Q Consensus 141 ~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 211 (501)
.+.-....+..|+.++++.+|||||.++||||.|..|+|.|+...-. ....+.+| +++.+ -.|
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hP----vIRTl----YDH 171 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHP----VIRTL----YDH 171 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCc----eEeeh----hhc
Confidence 34445567889999999999999999999999999999999873210 00111111 22222 245
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce-eE--eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCccee
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 288 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~-~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 288 (501)
...|.++.|+|....|++|+.|++|+++|..... +. .......+|.++.|+|.|.+|+.|..-.++++||+.+-++.
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 7789999999999999999999999999976421 11 11224568999999999999999999999999999875431
Q ss_pred EeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010777 289 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 368 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~ 368 (501)
+++. .-.+|.+.|+++.+++.+++.+|+|.||.|+|||--++
T Consensus 252 ---------------------vsan-----------------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~ 293 (430)
T KOG0640|consen 252 ---------------------VSAN-----------------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN 293 (430)
T ss_pred ---------------------eecC-----------------cccccccceeEEEecCCccEEEEeccCCcEEeeccccH
Confidence 1111 11368999999999999999999999999999999999
Q ss_pred ceeeecc-cCC-CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC-----CCeEEEEECCCC
Q 010777 369 KYVHDLR-EHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----EPVYSLAFSPTG 441 (501)
Q Consensus 369 ~~~~~~~-~~~-~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~spdg 441 (501)
+++.++. .|. ..|.+..|..++. ++++.+.|..+++|.+.+++++.+..|-. .--+...|+...
T Consensus 294 rCv~t~~~AH~gsevcSa~Ftkn~k---------yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE 364 (430)
T KOG0640|consen 294 RCVRTIGNAHGGSEVCSAVFTKNGK---------YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE 364 (430)
T ss_pred HHHHHHHhhcCCceeeeEEEccCCe---------EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc
Confidence 9988875 343 4688889998886 88899999999999999999998887641 123456687777
Q ss_pred CEEEEEe-CCCcEEEEeCCCCeeE--EEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 442 EYLASGS-LDKSMHIWSLKEGKIV--KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 442 ~~lasgs-~Dg~i~iw~~~~~~~~--~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.|++.-. ..+.+.-||.+++..+ ..+.+++.+..+.-||.+-.+++|+.|...++|=-
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 7776543 3578999999987654 34456778899999999999999999999999953
No 75
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5.2e-30 Score=254.16 Aligned_cols=276 Identities=17% Similarity=0.226 Sum_probs=208.1
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCC-CCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEE
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLAT 229 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l~s 229 (501)
|-..|+...+++++..+++++.+..+..|+...+..... ...+... .......+|...|++++|+| ++.+|++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 455677788889988889999999999998654321100 0000000 00011235788999999999 8899999
Q ss_pred EeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEE
Q 010777 230 GSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 300 (501)
Q Consensus 230 g~~dg~i~iw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (501)
|+.|++|+||++... ....+.+|...|.+++|+|.+ ++|++|+.|++|+|||+.++..
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~------------- 160 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA------------- 160 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-------------
Confidence 999999999997532 345788999999999999986 6899999999999999976542
Q ss_pred EecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCC
Q 010777 301 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 380 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 380 (501)
+..+.+|...|.+++|+|+|.+|++|+.|++|+|||+++++.+..+..|.+.
T Consensus 161 ----------------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 161 ----------------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred ----------------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 2345678889999999999999999999999999999999988888888764
Q ss_pred -EEEEEEcCCCCCCCCCCCcEEEEEE---eCCCeEEEEeCCCCe-EEEEeeCC-CCCeEEEEECCCCCEEEEEe-CCCcE
Q 010777 381 -IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGK-LLYSLNGH-REPVYSLAFSPTGEYLASGS-LDKSM 453 (501)
Q Consensus 381 -v~~i~~~p~g~~~~~~~~~~~l~sg---s~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~spdg~~lasgs-~Dg~i 453 (501)
+..+.|.+++. .++.+| +.|+.|++||+++.. .+.....+ ...+....|++++++|++|+ .|+.|
T Consensus 213 ~~~~~~w~~~~~--------~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 213 KSQRCLWAKRKD--------LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred cceEEEEcCCCC--------eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 34677887653 244444 358999999998754 33333323 34566678999999999887 59999
Q ss_pred EEEeCCCCeeEEEEec--CCCEEEEEECCC
Q 010777 454 HIWSLKEGKIVKTYTG--NGGIFEVCWNKE 481 (501)
Q Consensus 454 ~iw~~~~~~~~~~~~~--~~~i~~~~ws~~ 481 (501)
++|++.+++++..+.. ......++|.|.
T Consensus 285 riwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 285 RCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 9999999987765533 234567777774
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7e-31 Score=223.99 Aligned_cols=287 Identities=20% Similarity=0.319 Sum_probs=227.0
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
..|.||..+++-+.|+.+|.+|+|++.|.++.+|--.+|. ..+.+.+|.+.|+|++..-+.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------rlGty~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------RLGTYDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------eeeeecCCCceEEEEEecCCcce
Confidence 3578999999999999999999999999999999755543 22456678899999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEec-----CCeEEEEeCC-------CcceeEeeeec
Q 010777 227 LATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDVK-------TEEWKQQFEFH 294 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~i~iwd~~-------~~~~~~~~~~~ 294 (501)
+++|+.|.++++||.........-....+|..+.|+++|++++.+.. -+.|.++|++ ..+....+..+
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999999999999875444333446789999999999998877653 3678999987 33444455556
Q ss_pred cCCeEEEecCC-CceEEEecCCCeEEEEEcCCCc-ceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 010777 295 SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 372 (501)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 372 (501)
...+...-|.+ +..++++..+|.|..|+..++. .+..-.-|...|+.++++||..+|+|+|.|.+.++||..+-..+.
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 66677777764 4567889999999999999874 444556789999999999999999999999999999999888877
Q ss_pred ecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCC------------eEEEEeeCCCCCeEEEEECC
Q 010777 373 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVELG------------KLLYSLNGHREPVYSLAFSP 439 (501)
Q Consensus 373 ~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg-~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~sp 439 (501)
++. ...++.+.+++|... .+++.|+.+- .|.-=..+.| +.+..+++|-+||++|+|||
T Consensus 227 ty~-te~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 227 TYT-TERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred Eee-ecccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 765 356888888888643 2444444331 1211122222 34556789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 010777 440 TGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 440 dg~~lasgs~Dg~i~iw~~~ 459 (501)
+|+..++|+.||.|++..+.
T Consensus 298 dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCcccccCCCCceEEEEEec
Confidence 99999999999999998654
No 77
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.1e-29 Score=251.78 Aligned_cols=244 Identities=20% Similarity=0.347 Sum_probs=198.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCcee--------------EeecCCCCCEEEEEecC-CCCEEEEEecCCeEE
Q 010777 214 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--------------CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAI 278 (501)
Q Consensus 214 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~--------------~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~i~ 278 (501)
.|.....++++..+++++.+..+..|+..+... ..+.+|.++|++++|+| ++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 455555667777778888888888887544321 23678999999999999 788999999999999
Q ss_pred EEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEeCC
Q 010777 279 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD 357 (501)
Q Consensus 279 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~D 357 (501)
+||+.++.... ....++..+.+|...|.+++|+|++ .+|++|+.|
T Consensus 102 IWdi~~~~~~~----------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 102 GWGIPEEGLTQ----------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EEecCCCcccc----------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 99987542110 0123456788999999999999986 699999999
Q ss_pred CeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCC-eEEEE
Q 010777 358 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLA 436 (501)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~ 436 (501)
++|+|||+.++..+..+..|...|.+++|+|++. +|++|+.|+.|+|||+++++.+.++.+|... +..+.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~---------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS---------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC---------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 9999999999998888999999999999999986 7999999999999999999999999999765 45688
Q ss_pred ECCCCCEEEEEe----CCCcEEEEeCCCCe-eEEEEe--cCCCEEEEEECCCCCEEEEEE-CCCeEEEEEee
Q 010777 437 FSPTGEYLASGS----LDKSMHIWSLKEGK-IVKTYT--GNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 500 (501)
Q Consensus 437 ~spdg~~lasgs----~Dg~i~iw~~~~~~-~~~~~~--~~~~i~~~~ws~~g~~la~~~-~d~~v~v~~~~ 500 (501)
|++++..|++++ .|+.|++||+++.. .+.... ....+..+.|++++++|++|+ .|+.|++||++
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 999988887765 47899999998754 333332 233566778999999999887 59999999986
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=6.5e-30 Score=221.79 Aligned_cols=269 Identities=21% Similarity=0.342 Sum_probs=207.6
Q ss_pred CccceeEEEECCC-CCEEEEEECCCcEEEEecCCC-CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 010777 152 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 229 (501)
Q Consensus 152 H~~~V~~~~~sp~-~~~l~sgs~D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 229 (501)
-.+.|.+++|||. ..+|+.||.||+||+|+++.. ...++ ....+.++|++++|+.||..+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch----------------hhhccCCCeEEEEEccCCceEEe
Confidence 5678999999995 567778999999999999763 22211 12345789999999999999999
Q ss_pred EeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCC--EEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCc
Q 010777 230 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 307 (501)
Q Consensus 230 g~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (501)
|+.|+.+++||+.......+..|.++|.++.|-+... .|+|||.|++|+.||++....+.++...
T Consensus 90 g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP------------- 156 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP------------- 156 (347)
T ss_pred eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-------------
Confidence 9999999999999888889999999999999988765 7999999999999999865544333211
Q ss_pred eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-ecc-cCCCCEEEEE
Q 010777 308 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLR-EHSKEIYTIR 385 (501)
Q Consensus 308 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~-~~~~~v~~i~ 385 (501)
..+.+++. -..+++.+..++.|.+|++..+.... .+. ...-.+.+|+
T Consensus 157 -----------------------------eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va 205 (347)
T KOG0647|consen 157 -----------------------------ERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA 205 (347)
T ss_pred -----------------------------ceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE
Confidence 12222222 23467778888999999996553221 111 1223567787
Q ss_pred EcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEeeCCCC---------CeEEEEECCCCCEEEEEeCCCcEE
Q 010777 386 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 386 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
..++.. ..|.|+-.|.+-|..+..+ +.-++++.|+. +|++|+|+|.-..|+|+|.||++.
T Consensus 206 ~f~d~~---------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 206 CFQDKD---------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFS 276 (347)
T ss_pred EEecCC---------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEE
Confidence 777664 2478999999999988876 66678888873 478899999999999999999999
Q ss_pred EEeCCCCeeEEEEec-CCCEEEEEECCCCCEEEEEE
Q 010777 455 IWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACF 489 (501)
Q Consensus 455 iw~~~~~~~~~~~~~-~~~i~~~~ws~~g~~la~~~ 489 (501)
+||-.....+++.+. ...|.+++|+.+|+++|.+.
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999887766777654 55799999999999998764
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.7e-29 Score=217.96 Aligned_cols=278 Identities=22% Similarity=0.334 Sum_probs=220.2
Q ss_pred ccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 010777 149 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 228 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 228 (501)
++.-.+.|+++.|+++|.+|++++.|.+++|||..+++.... + ..+...|..++|......++
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-------------i----~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-------------I----NSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------e----ecccccccEEEEecCCceEE
Confidence 333467799999999999999999999999999987753221 1 11234577788877666777
Q ss_pred EEeC--CCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 229 TGSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 229 sg~~--dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
.++. |.+||.-++. .+.+..|.||+..|.+|+.+|-++.|+|++.|++|++||++..++...+.
T Consensus 73 ~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~------------- 139 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN------------- 139 (311)
T ss_pred EccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-------------
Confidence 6666 8899999875 46677899999999999999999999999999999999998765433221
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeeecc---cCCCC
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR---EHSKE 380 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~---~~~~~ 380 (501)
...-..++|.|.|-++|++.....|++||++.- .+..++. .....
T Consensus 140 ------------------------------~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e 189 (311)
T KOG1446|consen 140 ------------------------------LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE 189 (311)
T ss_pred ------------------------------cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence 112235889999999999998889999999753 3333333 23567
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCe---EEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV---YSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
...+.|+|+|+ +|+.+...+.+++.|.-+|..+.++.++...- ....|+||++++++|+.||+|++|+
T Consensus 190 w~~l~FS~dGK---------~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 190 WTDLEFSPDGK---------SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred eeeeEEcCCCC---------EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 88999999997 56667788999999999999998888775432 5788999999999999999999999
Q ss_pred CCCCeeEEEEec--CCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 458 LKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 458 ~~~~~~~~~~~~--~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
+++|+.+..+.+ .+.+.++.|+|.-.++|+++.. +.+|
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~--l~fw 300 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN--LVFW 300 (311)
T ss_pred cCCCcEeeEecCCCCCCccccccCCceeeeeecCce--EEEE
Confidence 999999988877 3457888999998777777544 5555
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=7.8e-29 Score=206.49 Aligned_cols=278 Identities=24% Similarity=0.457 Sum_probs=228.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC------------c---e-eEeecCCCCCEEEEEecCCCCEEEEEecCC
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG------------D---L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 275 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~------------~---~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 275 (501)
+..|.+++|+|.|.+.+.|+...+.||..... . . ...-+.|++.|+|.+|+|.|..|++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 56799999999999999999999999975211 0 1 123356899999999999999999999999
Q ss_pred eEEEEeCCCcce-----eEeeeeccCCeEEEecCCC-----ceEEEe-cCCCeEEEEEcCCCcceeeecCCCCceeEEEE
Q 010777 276 TAIVWDVKTEEW-----KQQFEFHSGPTLDVDWRNN-----VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 344 (501)
Q Consensus 276 ~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 344 (501)
+|++.-.+...+ --.|..|.+.+.++.|.++ ..++++ ..|-.|++-|.+.+++...+.||++.|.++ +
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y 190 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence 999876544332 2357788888988888532 234443 467789999999999999999999999877 3
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeeeccc--C-----CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 010777 345 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--H-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 417 (501)
Q Consensus 345 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 417 (501)
+-+|-+|++|+.|.+||+||++...++.++.. | ...|.+++..|.|. +|++|-.|....+||++
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr---------ll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR---------LLASGHADSSCMLYDIR 261 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc---------eeeeccCCCceEEEEee
Confidence 34688999999999999999998888766532 2 25688999999997 89999999999999999
Q ss_pred CCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC---ee--EEEEecCCCEEEEEECCCCCEEEEEECCC
Q 010777 418 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---KI--VKTYTGNGGIFEVCWNKEGDKIAACFANH 492 (501)
Q Consensus 418 ~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~---~~--~~~~~~~~~i~~~~ws~~g~~la~~~~d~ 492 (501)
.+++++.+..|...|.++.|||...||.++|.|..|++-|+..- ++ +..-++...+..+.|+|..-.+++.+.|+
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 99999999999999999999999999999999999999998632 11 22224455688899999998899999999
Q ss_pred eEEEEEe
Q 010777 493 TVCVLDF 499 (501)
Q Consensus 493 ~v~v~~~ 499 (501)
++.+|-+
T Consensus 342 t~tlwa~ 348 (350)
T KOG0641|consen 342 TATLWAL 348 (350)
T ss_pred eEEEecc
Confidence 9999964
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=227.02 Aligned_cols=282 Identities=22% Similarity=0.324 Sum_probs=231.5
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
..+|.++...|....++|||.|..+.++|...+.. .....+|...|+.+.|+++...+++++.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~-----------------l~~~~Gh~kki~~v~~~~~~~~v~~aSa 281 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI-----------------LATLKGHTKKITSVKFHKDLDTVITASA 281 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh-----------------hhhccCcceEEEEEEeccchhheeecCC
Confidence 35788888888878999999999999999765432 1223456788999999999999999999
Q ss_pred CCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE
Q 010777 233 DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 233 dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
|..|+||.... ........|..+|+.+..+|.|.||++++.|+++.+.|++++........
T Consensus 282 d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------ 343 (506)
T KOG0289|consen 282 DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------ 343 (506)
T ss_pred cceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------------------
Confidence 99999998653 34456778999999999999999999999999999999988754321110
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCC
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 391 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~ 391 (501)
.+..-.+++++|||||-+|++|..||.++|||++....+..|.+|.++|.+|+|+.+|
T Consensus 344 ---------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG- 401 (506)
T KOG0289|consen 344 ---------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG- 401 (506)
T ss_pred ---------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-
Confidence 0112257899999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCC-CCCeEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEe
Q 010777 392 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLK--EGKIVKTYT 468 (501)
Q Consensus 392 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~--~~~~~~~~~ 468 (501)
++|++++.|+.|++||++..+...++.-. ..+|.++.|.+.|+||+.+|.|=+|+++.-. .+..+..+.
T Consensus 402 --------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 402 --------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred --------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence 59999999999999999987766665432 2479999999999999999888666666533 345555555
Q ss_pred cCC-CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 469 GNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 469 ~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.+. ..+.+.|.....++++|+.|..++|+-+
T Consensus 474 ~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeecccceEEeeccchhheEEeec
Confidence 444 5678889999999999999999888754
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=6.4e-28 Score=235.09 Aligned_cols=330 Identities=20% Similarity=0.303 Sum_probs=254.1
Q ss_pred CCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC
Q 010777 143 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 222 (501)
Q Consensus 143 ~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 222 (501)
.+.+++++++...|+++.=+|--..+|.|-.+|+|.|+++..++.. ..+++ .-+.|+.++|..
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----------~sFk~-------d~g~VtslSFrt 254 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----------MSFKQ-------DWGRVTSLSFRT 254 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------EEEEc-------cccceeEEEecc
Confidence 4567889999999999999999999999999999999999766421 12221 136799999999
Q ss_pred CCCE-EEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc----eeEeeeecc
Q 010777 223 EGTL-LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHS 295 (501)
Q Consensus 223 ~~~~-l~sg~~dg~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~ 295 (501)
||.. +++|...|.+.+||++..... ....|.+.|..+.|-|....+++++.|+++++|=..++. +.+.-.+|.
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 9975 566777799999999876543 345798999999999999999999999999999544332 223334555
Q ss_pred CCeEEEecC--CCceEEEecCCC---------------------------------------------------------
Q 010777 296 GPTLDVDWR--NNVSFATSSTDN--------------------------------------------------------- 316 (501)
Q Consensus 296 ~~~~~~~~~--~~~~~~~~~~d~--------------------------------------------------------- 316 (501)
.|..++.|. ....+.+++.|.
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 555555543 122223333343
Q ss_pred --------eEEEEEcCCCcc-eeeec-----CCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec---ccCCC
Q 010777 317 --------MIYVCKIGENRP-IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL---REHSK 379 (501)
Q Consensus 317 --------~i~~~~~~~~~~-~~~~~-----~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~---~~~~~ 379 (501)
..+.|+.+.... -..+. .....+++++.++-|++.+.|+..|+|-+|++.++.....+ ..|..
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 344444433221 01111 12256889999999999999999999999999999888877 47999
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-------------------------------------
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL------------------------------------- 422 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~------------------------------------- 422 (501)
+|+.++....+. .+++++.+|.+++||.....++
T Consensus 495 ~V~gla~D~~n~---------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 495 EVTGLAVDGTNR---------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred ceeEEEecCCCc---------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 999999765554 6788899999999987654321
Q ss_pred ----EEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECC-CeEEEE
Q 010777 423 ----YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-HTVCVL 497 (501)
Q Consensus 423 ----~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d-~~v~v~ 497 (501)
..+.||...|++++|||||+||++++.|++|++||+.++.++..+.....+.++.|||.|++||+...| ..|++|
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 233489999999999999999999999999999999999999998888889999999999999999887 568888
Q ss_pred E
Q 010777 498 D 498 (501)
Q Consensus 498 ~ 498 (501)
-
T Consensus 646 s 646 (910)
T KOG1539|consen 646 S 646 (910)
T ss_pred E
Confidence 3
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=220.92 Aligned_cols=247 Identities=25% Similarity=0.421 Sum_probs=207.8
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
+-++.||++.|..+.++.+-.+.||++.|=+.++||.-+|...- .-.|..-|.+++|+.|.+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh------------------sf~hkhivk~~af~~ds~ 113 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH------------------SFEHKHIVKAVAFSQDSN 113 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh------------------hhhhhheeeeEEecccch
Confidence 56899999999999999999999999999999999977664321 112344589999999999
Q ss_pred EEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEec
Q 010777 226 LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 303 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (501)
+|++|+.+..+|||+++.. ....+.+|++.|..+-|....+.|++++.|++||+||.+++..++.+.+
T Consensus 114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~---------- 183 (334)
T KOG0278|consen 114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF---------- 183 (334)
T ss_pred hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----------
Confidence 9999999999999998753 4457899999999999999999999999999999999999987665543
Q ss_pred CCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEE
Q 010777 304 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 383 (501)
Q Consensus 304 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~ 383 (501)
...|+++.++++|.+|.++ .-+.|.+||.++-..+..+... ..|.+
T Consensus 184 --------------------------------~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~S 229 (334)
T KOG0278|consen 184 --------------------------------NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVES 229 (334)
T ss_pred --------------------------------CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-ccccc
Confidence 3457889999999977554 5578999999988877766543 34566
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 462 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~ 462 (501)
...+|... ++++|+.|..++.||..++..+..+ ++|.++|.||.|+|+|...|+||.||+|++|...-++
T Consensus 230 ASL~P~k~---------~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 230 ASLHPKKE---------FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccCCCc---------eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 66666542 6788999999999999999998885 8999999999999999999999999999999987655
Q ss_pred e
Q 010777 463 I 463 (501)
Q Consensus 463 ~ 463 (501)
.
T Consensus 301 ~ 301 (334)
T KOG0278|consen 301 T 301 (334)
T ss_pred c
Confidence 3
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-30 Score=222.98 Aligned_cols=285 Identities=24% Similarity=0.428 Sum_probs=226.8
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
+..|.||+++|..++.......+.|+|.|.+.+||.++++.+. ..+.+|.+.|.++.|++.+.
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-----------------~~Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-----------------ATYTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-----------------eeecccccceeeEEeccccc
Confidence 4567899999999998887789999999999999999988643 23456788999999999999
Q ss_pred EEEEEeCCCeEEEEECC------C-----------------------------------ceeEeecCCCCCEEEEEecCC
Q 010777 226 LLATGSYDGQARIWSTN------G-----------------------------------DLKCTLSKHKGPIFSLKWNKK 264 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~------~-----------------------------------~~~~~~~~h~~~V~~l~~~~~ 264 (501)
++++++.|++..||... . -..+.+.+|.+.|.+..|-..
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 99999999999999510 0 012345666666666667666
Q ss_pred CCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEE
Q 010777 265 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 344 (501)
Q Consensus 265 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 344 (501)
|++++++++|++..+||+++++ ++..+.||..+.+-++-
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge-----------------------------------------~v~~LtGHd~ELtHcst 322 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGE-----------------------------------------VVNILTGHDSELTHCST 322 (481)
T ss_pred cceeeeeeccccceeeeeccCc-----------------------------------------eeccccCcchhcccccc
Confidence 7777777777777777666654 45567789999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCc-eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EE
Q 010777 345 DPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LL 422 (501)
Q Consensus 345 ~~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~ 422 (501)
+|..+++++.+.|.+.|+||++..- .+..|++|...|+++.|.-+.. +++||.|.+|++||+++.+ ++
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~----------vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR----------VVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc----------eeecCCCceEEEeeeccccCcc
Confidence 9999999999999999999998542 3567899999999999987763 7899999999999998764 45
Q ss_pred EEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEE----ecCC-CEEEEEECCCC--CEEEEEECCCeEE
Q 010777 423 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TGNG-GIFEVCWNKEG--DKIAACFANHTVC 495 (501)
Q Consensus 423 ~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~----~~~~-~i~~~~ws~~g--~~la~~~~d~~v~ 495 (501)
.++. ...+++.++.+..++.||.--.+..|++||+....+.+.. .++. -|.+++|..+- .-|.+|+-|..+.
T Consensus 393 ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 393 ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 6666 4578999999998889998888889999999765443221 2333 37899997764 5677888898888
Q ss_pred EEEe
Q 010777 496 VLDF 499 (501)
Q Consensus 496 v~~~ 499 (501)
=|++
T Consensus 472 gW~i 475 (481)
T KOG0300|consen 472 GWKI 475 (481)
T ss_pred eeEe
Confidence 8876
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.2e-29 Score=251.64 Aligned_cols=284 Identities=25% Similarity=0.393 Sum_probs=216.4
Q ss_pred CceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCC--CCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 010777 144 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 221 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 221 (501)
..+.++..|.+.|+|+.|+|||++||+||.|+.|.||..... .......++..++...+. .....+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccC
Confidence 345677889999999999999999999999999999998741 111222233333332222 12234578899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEE
Q 010777 222 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 300 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (501)
|++.+|++++.|+.|.||+... +....+.+|.+.|-++.|.|-|+||++-+.|++|++|.+.+..+.+.+..+...
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~--- 215 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE--- 215 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh---
Confidence 9999999999999999999754 566688999999999999999999999999999999986543333322211100
Q ss_pred EecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceeeeccc
Q 010777 301 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLRE 376 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~~~ 376 (501)
. +-...+..+.|||||++|++... -.++.|.+-.+.+.-..|.+
T Consensus 216 --------------------------~------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG 263 (942)
T KOG0973|consen 216 --------------------------S------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG 263 (942)
T ss_pred --------------------------C------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec
Confidence 0 01224667999999999998643 23688888777787888999
Q ss_pred CCCCEEEEEEcCCCCC-------CCCCC-CcEEEEEEeCCCeEEEEeCCCCeEEEEeeC-CCCCeEEEEECCCCCEEEEE
Q 010777 377 HSKEIYTIRWSPTGSG-------TNNPN-QQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASG 447 (501)
Q Consensus 377 ~~~~v~~i~~~p~g~~-------~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spdg~~lasg 447 (501)
|.+++.+++|+|.--. ...++ ...++|+||.|++|.||.....++++.+.. ...+|.+++|+|||..|..+
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEE
Confidence 9999999999984211 11122 224899999999999999988888766532 34689999999999999999
Q ss_pred eCCCcEEEEeCCCCee
Q 010777 448 SLDKSMHIWSLKEGKI 463 (501)
Q Consensus 448 s~Dg~i~iw~~~~~~~ 463 (501)
|.||+|.++.+...++
T Consensus 344 S~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 344 SLDGTVALIHFEEKEL 359 (942)
T ss_pred ecCCeEEEEEcchHHh
Confidence 9999999999986543
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.5e-29 Score=227.58 Aligned_cols=268 Identities=22% Similarity=0.361 Sum_probs=229.5
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee-----------------Eee--cCCCCCEEEEEecCCCCEEEEE
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-----------------CTL--SKHKGPIFSLKWNKKGDYLLTG 271 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~-----------------~~~--~~h~~~V~~l~~~~~~~~l~s~ 271 (501)
|.-+|++++++|++.+.++++.+++|.=|++..... ... .+|...|.+++.+++|.||++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 456799999999999999999999999998643210 011 2788899999999999999999
Q ss_pred ecCCeEEEEeCCCcceeEeeeeccCCeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCE
Q 010777 272 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 350 (501)
Q Consensus 272 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 350 (501)
+.|..|.||+.++.+.++.+..|.+.|.++.|. ....+.+++.|..+.+|++.....+.++.||...|.+|....-++.
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~ 300 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC 300 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence 999999999999999999999999999999996 4567889999999999999998889999999999999998888888
Q ss_pred EEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee-CC-
Q 010777 351 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GH- 428 (501)
Q Consensus 351 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h- 428 (501)
+-.|+.|+++++|++.... ...++++.+.+-|++|-.+. .+++||.+|.|.+|++.+.+++++.. +|
T Consensus 301 vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In~~----------HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFINDE----------HFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred EEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEeccc----------ceeeccCCceEEEeeecccCceeEeecccc
Confidence 8788899999999994433 33467888899999997665 47899999999999999999887653 22
Q ss_pred ----------CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eeEEEEecCCCEEEEEECCCCCEEEEEE
Q 010777 429 ----------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG----KIVKTYTGNGGIFEVCWNKEGDKIAACF 489 (501)
Q Consensus 429 ----------~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~----~~~~~~~~~~~i~~~~ws~~g~~la~~~ 489 (501)
..+|++|+..|...++|+||.+|.|++|-+.+| .++..+.-.+-|++++|+++|+.|++|.
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 127999999999999999999999999999887 3566666678899999999999776663
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=6.4e-29 Score=237.55 Aligned_cols=278 Identities=22% Similarity=0.383 Sum_probs=225.7
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEE-EEEC-CCC
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWN-GEG 224 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~s-~~~ 224 (501)
+.+.||...|.+|++.+. ..++++|-||++++|+-......+. ..+ ..+.+-|.+ +++- .++
T Consensus 8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~-----------~~~----~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET-----------HAF----EGPKGFIANSICYAESDK 71 (745)
T ss_pred EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc-----------eec----ccCcceeeccceeccccC
Confidence 678999999999997754 4889999999999998543321110 000 111222333 5555 355
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEec
Q 010777 225 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 303 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (501)
-.+++|+.|..|.+|...+ ....++.+|...|.++....++. ++|||.|.++++|- .+++...+..|..+|.++..
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVAS 148 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeee
Confidence 6799999999999999765 56678999999999998777776 99999999999994 55666678999999999887
Q ss_pred CCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEE
Q 010777 304 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 383 (501)
Q Consensus 304 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~ 383 (501)
.+...+++++.|++|++|.- ++.+++|.||...|..+++-+++. |++|+.||.|++|++ ++.++.++.+|..-+++
T Consensus 149 l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 149 LPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 77779999999999999986 667889999999999999987654 679999999999998 78888899999999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
+...+++. .+++++.|++++||+.. .+.+.+.--...|+++.+-++|. |++|+.||.|+||...
T Consensus 225 is~~~~~~---------~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 225 ISMALSDG---------LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCCCC---------eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99555543 78999999999999976 67777764455899999988887 6778889999999875
No 88
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.6e-28 Score=239.72 Aligned_cols=245 Identities=19% Similarity=0.322 Sum_probs=183.8
Q ss_pred EEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCc----
Q 010777 170 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD---- 244 (501)
Q Consensus 170 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~---- 244 (501)
+||.++.|++|+..... .+..+ .+|...|.+++|+|+ +.+|++|+.|+.|+||++...
T Consensus 49 gGG~~gvI~L~~~~r~~-------------~v~~L----~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~ 111 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP-------------PVIKL----KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV 111 (568)
T ss_pred CCCceeEEEeeecCCCc-------------eEEEE----cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 36678899999864321 11222 346788999999996 799999999999999997531
Q ss_pred -----eeEeecCCCCCEEEEEecCCCCEE-EEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeE
Q 010777 245 -----LKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 318 (501)
Q Consensus 245 -----~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 318 (501)
....+.+|...|.+++|+|++..+ ++|+.|++|++||++++....
T Consensus 112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~----------------------------- 162 (568)
T PTZ00420 112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF----------------------------- 162 (568)
T ss_pred cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-----------------------------
Confidence 234678899999999999998764 689999999999998764221
Q ss_pred EEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEE-----EcCCCCCC
Q 010777 319 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR-----WSPTGSGT 393 (501)
Q Consensus 319 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~-----~~p~g~~~ 393 (501)
.+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+.++.+|.+.+.+.. |++++.
T Consensus 163 ------------~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~-- 227 (568)
T PTZ00420 163 ------------QIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN-- 227 (568)
T ss_pred ------------EEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC--
Confidence 111 345688999999999999999999999999999999988988887654433 335543
Q ss_pred CCCCCcEEEEEEeCCC----eEEEEeCCC-CeEEEEee--CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--E
Q 010777 394 NNPNQQLILASASFDS----TVKLWDVEL-GKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--V 464 (501)
Q Consensus 394 ~~~~~~~~l~sgs~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~--~ 464 (501)
+|++++.|+ .|+|||+++ ++++..+. .+.+.+.....+++|.++++|+.|+.|++|++..+.+ +
T Consensus 228 -------~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 228 -------YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred -------EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 566666664 799999995 55555443 3344445555567799999999999999999987754 2
Q ss_pred EEEecCCCEEEEEECCCC
Q 010777 465 KTYTGNGGIFEVCWNKEG 482 (501)
Q Consensus 465 ~~~~~~~~i~~~~ws~~g 482 (501)
..+.......+++|.|+-
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 333334557788999964
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-28 Score=212.41 Aligned_cols=260 Identities=21% Similarity=0.352 Sum_probs=206.2
Q ss_pred ceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 010777 145 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 224 (501)
Q Consensus 145 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 224 (501)
+...+..|.++|+|+|. ++.++||||.|-+|+|||+...... +....|.+.|+++.|.+..
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~~~ 95 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYPPL 95 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecCCc
Confidence 35667889999999998 5899999999999999998754322 1222357789999999876
Q ss_pred C--EEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 225 T--LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 225 ~--~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
. .|++|+.||.|.+|+... ....++.+|++.|+.++.||.++.-++.+.|+.++.||+-+++..
T Consensus 96 S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a------------- 162 (362)
T KOG0294|consen 96 SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA------------- 162 (362)
T ss_pred chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc-------------
Confidence 5 899999999999999865 566789999999999999999999999999999999999776521
Q ss_pred ecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCE
Q 010777 302 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 381 (501)
Q Consensus 302 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v 381 (501)
++..++. ..+.|.|+|.|.+|+.++.+ .|-||.+.+......+... ..+
T Consensus 163 -----------------~v~~L~~------------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~ 211 (362)
T KOG0294|consen 163 -----------------FVLNLKN------------KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRI 211 (362)
T ss_pred -----------------eeeccCC------------cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccc
Confidence 1122211 12338999999988888776 5889988776655444332 456
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEE--CCCCCEEEEEeCCCcEEEEeCC
Q 010777 382 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 382 ~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--spdg~~lasgs~Dg~i~iw~~~ 459 (501)
.++.|-..+ .|++|..|+.|++||.....++..+.+|...|-++.+ .|++.||+|+|.||.|+|||+.
T Consensus 212 l~~~~l~~~----------~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 212 LCATFLDGS----------ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eeeeecCCc----------eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 666664433 6899999999999999999999999999999999984 5788999999999999999998
Q ss_pred CC-----eeEEEEecCCCEEEEE
Q 010777 460 EG-----KIVKTYTGNGGIFEVC 477 (501)
Q Consensus 460 ~~-----~~~~~~~~~~~i~~~~ 477 (501)
.. +++..+..+..++++.
T Consensus 282 ~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 282 METKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred ccccCCcceeEEeecCCccceee
Confidence 65 3555555555566654
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=213.43 Aligned_cols=291 Identities=23% Similarity=0.348 Sum_probs=210.5
Q ss_pred CCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 010777 142 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 221 (501)
Q Consensus 142 ~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 221 (501)
.+-.+.+|+||.+.|++++|+.||++|||++.|++|+||++.+..... +...+.+-....-+.+.|+
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-------------Hr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-------------HRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-------------hhHhhccccCCCceEEEEC
Confidence 344567899999999999999999999999999999999987532110 0001112223457889999
Q ss_pred CCCCEEEE-EeCCCeEEEEECC----CceeE---------eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcce
Q 010777 222 GEGTLLAT-GSYDGQARIWSTN----GDLKC---------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 287 (501)
Q Consensus 222 ~~~~~l~s-g~~dg~i~iw~~~----~~~~~---------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 287 (501)
||.+-++. .-....+++|... +.... .-..|.-.|..+-....+.+|++++.|.+|.+|+++ |+.
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 99876554 4455688898642 22111 123466777777777888999999999999999998 777
Q ss_pred eEeeeeccCCeEEEecCCCceE-EEecCCCeEEEEEcC--------CCcceeeecCCCCceeEEEEcCCCCEEEEEeCCC
Q 010777 288 KQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIG--------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 358 (501)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg 358 (501)
.+.+...+.........++.+| ++++-.--+++|..- +-+.+..+.||...|..++|+++...++|.|.||
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 7776655554444444555555 555666668888642 1234567889999999999999999999999999
Q ss_pred eEEEEeCCCC-------ceeeec----ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-e
Q 010777 359 TAKIWNMKQD-------KYVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-N 426 (501)
Q Consensus 359 ~i~iwd~~~~-------~~~~~~----~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~ 426 (501)
++||||.+-. +.+.+. ....+.-..+..+|.|. .|| .+....|+++..++|+..-++ +
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---------~lA-~s~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---------SLA-VSFGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---------EEE-eecCCceEEEEcccCccchhHHH
Confidence 9999997532 111111 12223334788889886 343 455678999999998877665 3
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 427 GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 427 ~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
.|...|.+|+|+|+|+|+||+| |..++++.
T Consensus 371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5889999999999999999987 67788775
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-28 Score=232.99 Aligned_cols=276 Identities=26% Similarity=0.493 Sum_probs=229.8
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 010777 157 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 236 (501)
Q Consensus 157 ~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i 236 (501)
+-+.|+ ....||.| ....|.+|+-.++.. ..+..+ ....|+++.|+++|.+|+.|..+|.|
T Consensus 181 nlldWs-s~n~laVa-lg~~vylW~~~s~~v-----------~~l~~~------~~~~vtSv~ws~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVA-LGQSVYLWSASSGSV-----------TELCSF------GEELVTSVKWSPDGSHLAVGTSDGTV 241 (484)
T ss_pred hHhhcc-cCCeEEEE-ecceEEEEecCCCce-----------EEeEec------CCCceEEEEECCCCCEEEEeecCCeE
Confidence 346787 44455555 446799999776531 111111 14679999999999999999999999
Q ss_pred EEEECCC-ceeEeecC-CCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEe-eeeccCCeEEEecC-CCceEEEe
Q 010777 237 RIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWR-NNVSFATS 312 (501)
Q Consensus 237 ~iw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 312 (501)
.|||... .....+.+ |...|-+++|+ +..+.+|+.|+.|.++|++..+.... +..|...|..+.|. +...++++
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG 319 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG 319 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC
Confidence 9999754 34456666 99999999998 56799999999999999998765444 77899999999996 56788999
Q ss_pred cCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC-CCEEEEE--eCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCC
Q 010777 313 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 389 (501)
Q Consensus 313 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~ 389 (501)
+.|+.+++|+.....++..+..|.+.|.+++|+|- ..+||+| +.|++|++||..++..+..+. ....|.++.|++.
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKK 398 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCC
Confidence 99999999999888999999999999999999995 4678876 469999999999998887664 4568999999998
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010777 390 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 461 (501)
Q Consensus 390 g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~ 461 (501)
.. +++...|..++.|.||++.+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-..
T Consensus 399 ~k-------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 399 YK-------ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CC-------EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 75 234455677889999999999999999999999999999999999999999999999998764
No 92
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.5e-27 Score=237.55 Aligned_cols=227 Identities=18% Similarity=0.343 Sum_probs=181.4
Q ss_pred EeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCC-CCEEEEEecCCeEEEEeCCCcce-eEeeeeccCCeEEEecCCC
Q 010777 230 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRNN 306 (501)
Q Consensus 230 g~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 306 (501)
|+.++.|++|+... .....+.+|.++|++++|+|. +++|++|+.|++|++||+.++.. ...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------- 113 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence 66788999998654 345678899999999999997 78999999999999999975421 000
Q ss_pred ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEE
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 385 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 385 (501)
...++..+.+|...|.+++|+|++.. |++++.|++|+|||++++..+..+. +...|.+++
T Consensus 114 ------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 114 ------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK 174 (568)
T ss_pred ------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence 01234456789999999999999876 5799999999999999988776664 567899999
Q ss_pred EcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEE-----EEECCCCCEEEEEeCCC----cEEEE
Q 010777 386 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-----LAFSPTGEYLASGSLDK----SMHIW 456 (501)
Q Consensus 386 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~-----l~~spdg~~lasgs~Dg----~i~iw 456 (501)
|+|+|. +|++++.|+.|+|||+++++.+.++.+|.+.+.+ ..|++++.+|+++|.|+ +|+||
T Consensus 175 wspdG~---------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 175 WNIKGN---------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ECCCCC---------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 999986 7888999999999999999999999999876543 34578999999988775 79999
Q ss_pred eCCC-CeeEEEEecCC--CEEEEEE-CCCCCEEEEEECCCeEEEEEee
Q 010777 457 SLKE-GKIVKTYTGNG--GIFEVCW-NKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 457 ~~~~-~~~~~~~~~~~--~i~~~~w-s~~g~~la~~~~d~~v~v~~~~ 500 (501)
|+++ ++.+..+..+. ++....| .++|.++++|..|++|++|+++
T Consensus 246 Dlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 246 DLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 9985 55555554332 3323334 4568899999999999999985
No 93
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.5e-28 Score=233.48 Aligned_cols=273 Identities=22% Similarity=0.350 Sum_probs=233.9
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee---EeecCCCCCEEE-EEecC-CCCEEEEEecCCeEEEEeC
Q 010777 208 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFS-LKWNK-KGDYLLTGSCDKTAIVWDV 282 (501)
Q Consensus 208 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~---~~~~~h~~~V~~-l~~~~-~~~~l~s~s~D~~i~iwd~ 282 (501)
..+|...|..++..+. ..++++|.||++++|...++.. ..+.+|.+-|.. ++|-+ ++-.|++|++|+++.+|.+
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 3456788888886654 5899999999999999755432 356778887766 88876 3345999999999999999
Q ss_pred CCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEE
Q 010777 283 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 362 (501)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~i 362 (501)
.......++..|...|.++.......+++++-|.++++|.... ....+.||+..|++++.-|.+ .++|||.|.+|++
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKL 165 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCcceeee
Confidence 9999999999999999999977776799999999999998754 455689999999999999988 7889999999999
Q ss_pred EeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCC
Q 010777 363 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 442 (501)
Q Consensus 363 wd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 442 (501)
|.- ++.+++|.+|...|..+++-|++. ++|++.||.|++|++ +|.++.++.+|+.-|++++..+++.
T Consensus 166 Wk~--~~~l~tf~gHtD~VRgL~vl~~~~----------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 166 WKG--GTLLKTFSGHTDCVRGLAVLDDSH----------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred ccC--CchhhhhccchhheeeeEEecCCC----------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC
Confidence 964 788899999999999999988864 789999999999999 7899999999999999999888899
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 443 YLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.++++|.|++++||+.. .+++.+...+ .++++..-+.|+. ++|+.||.|+||..+
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 99999999999999876 7778877665 6888888788865 566679999999764
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=8e-28 Score=209.71 Aligned_cols=266 Identities=21% Similarity=0.355 Sum_probs=211.3
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
...|+.+.|+|.+..|+.++.||++++|++...... .. -.+..++++++|.++ ..+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-----------------~~-~~~~~plL~c~F~d~-~~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-----------------LK-FKHGAPLLDCAFADE-STIVTGGL 73 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-----------------hh-eecCCceeeeeccCC-ceEEEecc
Confidence 567999999999999999999999999998754210 00 124678999999984 67899999
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEe
Q 010777 233 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 312 (501)
Q Consensus 233 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (501)
||.|+.+|++......+..|..+|.++.+.+....+++||+|++|++||.+.......+.
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-------------------- 133 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-------------------- 133 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--------------------
Confidence 999999999988888888999999999999988999999999999999998632211110
Q ss_pred cCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc--CCCCEEEEEEcCCC
Q 010777 313 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTG 390 (501)
Q Consensus 313 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~p~g 390 (501)
....|.|+.. .|..|+.|+.|..+.+||+++.......+. ..-.+.+|++-|++
T Consensus 134 ----------------------~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~ 189 (323)
T KOG1036|consen 134 ----------------------QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG 189 (323)
T ss_pred ----------------------cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence 1124555554 467888999999999999987655432221 23357889888866
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCC----eEEEEeeCCCC---------CeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 391 SGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 391 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~---------~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
.+ .+.+|-||.|.+=.+... +..+.++.|.. ||++|+|||--+.|||||.||.|.+||
T Consensus 190 eG---------y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 190 EG---------YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred Cc---------eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 53 567899999887666554 55677888853 799999999999999999999999999
Q ss_pred CCCCeeEEEEecC-CCEEEEEECCCCCEEEEEEC
Q 010777 458 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFA 490 (501)
Q Consensus 458 ~~~~~~~~~~~~~-~~i~~~~ws~~g~~la~~~~ 490 (501)
+.+.+.+..+... ..|.+++|+.+|..||.++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9998888887664 56999999999999998853
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-29 Score=238.13 Aligned_cols=296 Identities=21% Similarity=0.386 Sum_probs=237.0
Q ss_pred CCcccee---EEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 151 GHTSEVC---ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 151 ~H~~~V~---~~~~sp-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.|...|. ++..++ .+++|+|||.||.|++|++..-..... .+ .......|+..|..+....+++.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s---~~--------~~asme~HsDWVNDiiL~~~~~t 87 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS---TP--------YIASMEHHSDWVNDIILCGNGKT 87 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc---cc--------hhhhhhhhHhHHhhHHhhcCCCc
Confidence 3556666 566665 467899999999999999764321100 00 12233456788999999999999
Q ss_pred EEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEe-cCCCCEEEEEecCCeEEEEeCCCcce--eEeeeeccCCeEE
Q 010777 227 LATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKTEEW--KQQFEFHSGPTLD 300 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~~~~~ 300 (501)
|+|+|.|-+|++|+.... +..++..|++.|.+|++ -++...++||+-|+.|++||+.++.- +..+.
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-------- 159 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-------- 159 (735)
T ss_pred eEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc--------
Confidence 999999999999998654 34577889999999999 77888899999999999999987732 11111
Q ss_pred EecCCCceEEEecCCCeEEEEEcCCCcceeeec-CCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCC
Q 010777 301 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 379 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 379 (501)
..+...+. |+...|.+++.++.|..|++|+..+.+++||.++.+.+..+++|..
T Consensus 160 -------------------------~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd 214 (735)
T KOG0308|consen 160 -------------------------NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD 214 (735)
T ss_pred -------------------------ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc
Confidence 01111222 7888999999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
.|..+..+++|. .++++|.||+|++||+...++++++..|...|+++..+|+=..+.+|+.||.|..=+++
T Consensus 215 NVr~ll~~dDGt---------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 215 NVRVLLVNDDGT---------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred ceEEEEEcCCCC---------eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 999999999997 68899999999999999999999999999999999999999999999999999999998
Q ss_pred C-CeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 460 E-GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 460 ~-~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
+ .+....+.....+..+..+...+.+-++..|+.|.-|-+
T Consensus 286 n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 286 NPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred CchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 8 445555666666666666655555566667777766644
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-27 Score=220.88 Aligned_cols=276 Identities=22% Similarity=0.343 Sum_probs=224.6
Q ss_pred ccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 153 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 153 ~~~V~~~~~sp~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
..+|.+++|||... -+|+++. -.+.||+..+.... +. ...-...|.+++|-.||++|+.|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-------------k~----~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-------------KT----FSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-------------hh----HHhhccceeEEEeecCCeEEEccC
Confidence 35799999999754 3443332 45778875432211 11 111245699999999999999999
Q ss_pred CCCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCC-EEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC--Cc
Q 010777 232 YDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NV 307 (501)
Q Consensus 232 ~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~ 307 (501)
..|.|+|+|.... ....+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+.+...+..+..|...+.+.+|.+ ..
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 9999999995542 4457889999999999999765 567888899999999999887667889999999999864 45
Q ss_pred eEEEecCCCeEEEEEcCCC-cceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeecccCCCCEEEEE
Q 010777 308 SFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIR 385 (501)
Q Consensus 308 ~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~ 385 (501)
.+++++-||.|++||++.. ..+..+ .|..+|..+.+-|.|.+||+++.. .|++||+.++. .+..+..|...|+|++
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLR 245 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEE
Confidence 6899999999999999876 555555 488999999999999999999764 79999998654 4555556999999999
Q ss_pred EcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 386 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 386 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
+..++. .|++|+-|+.|++||+.+-+.++.+. ..++|.+++.+|+++.++.|-.+|.+.+-..
T Consensus 246 l~s~~~---------rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 246 LASDST---------RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eecCCc---------eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 988775 68999999999999999889998887 6789999999999999999999998887743
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-27 Score=207.11 Aligned_cols=242 Identities=19% Similarity=0.295 Sum_probs=199.8
Q ss_pred eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC-CCceEEEec--CCCeEEEEEcC
Q 010777 248 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSS--TDNMIYVCKIG 324 (501)
Q Consensus 248 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~d~~i~~~~~~ 324 (501)
.+....+.|.++.|+++|.+|++++.|-++++||..++..+.++..+...+..+.|. ....++.++ .|.+|+..++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 344456789999999999999999999999999999999998888776666566663 233344444 48899999999
Q ss_pred CCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEE
Q 010777 325 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 404 (501)
Q Consensus 325 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~s 404 (501)
.++-++.|.||...|++++.+|-+..|++++.|++||+||++..++..-+..... ..++|.|.|- ++|+
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL---------ifA~ 157 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL---------IFAL 157 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc---------EEEE
Confidence 9999999999999999999999999999999999999999998877665544333 3568899984 7888
Q ss_pred EeCCCeEEEEeCCCC--eEE--EEee-CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC----EEE
Q 010777 405 ASFDSTVKLWDVELG--KLL--YSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFE 475 (501)
Q Consensus 405 gs~dg~i~iwd~~~~--~~~--~~~~-~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~----i~~ 475 (501)
+.....|+|||++.- .+. +.+. +-....+.|.|||||++|+.+...+.+++.|.-+|.+..++..... ..+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 887779999999853 222 2232 3356789999999999999999999999999999999888865432 358
Q ss_pred EEECCCCCEEEEEECCCeEEEEEee
Q 010777 476 VCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 476 ~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.+|+|||+++.+|+.||+|+||++.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcC
Confidence 8999999999999999999999974
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=229.34 Aligned_cols=319 Identities=21% Similarity=0.363 Sum_probs=249.4
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC------------CC
Q 010777 156 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN------------GE 223 (501)
Q Consensus 156 V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s------------~~ 223 (501)
.-+|.|+|...+|...-.|..|+|||+.+-...++.. ..+. |+..|+.+.-- |.
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~------s~ly--------HS~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS------SMLY--------HSACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEecccccccccee------eeee--------ccceeeeeccccccccCcccccCCc
Confidence 3578899999999999999999999997643322111 0111 12222222211 22
Q ss_pred CCEEEEEeCCCeEEEEECCC----ceeE----------------------------------eecCCCCCEEEEEecCCC
Q 010777 224 GTLLATGSYDGQARIWSTNG----DLKC----------------------------------TLSKHKGPIFSLKWNKKG 265 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~----~~~~----------------------------------~~~~h~~~V~~l~~~~~~ 265 (501)
..|++++.|++||+|++.. .... ........+.+++.+|+|
T Consensus 393 -~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 393 -GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred -cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 2489999999999999754 1100 000122368999999999
Q ss_pred CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC----CceEEEecCCCeEEEEEcCCC-cceeeecCCCCcee
Q 010777 266 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVN 340 (501)
Q Consensus 266 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~ 340 (501)
++|++|..-|++++|++..-++...++.|...++++.|.. +..+++++.|..|+++|+..+ .+++++.+|...|+
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 9999999999999999999998889999999999998863 456899999999999999765 46778999999999
Q ss_pred EEEEcCCC--CEEEEEeCCCeEEEEeCCC----Ccee--eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEE
Q 010777 341 CVKWDPTG--SLLASCSDDVTAKIWNMKQ----DKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 412 (501)
Q Consensus 341 ~v~~~~~~--~~l~s~s~Dg~i~iwd~~~----~~~~--~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 412 (501)
++.|-..| ..+++|+.|..|.+ +... +... ++-......++.++..|... ++++++.|.+|+
T Consensus 552 svKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k---------~v~t~cQDrnir 621 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK---------LVVTVCQDRNIR 621 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcc---------eEEEEecccceE
Confidence 99998877 66889999987754 3322 1111 11111234678888888765 789999999999
Q ss_pred EEeCCCCeEEEEeeC---CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEE
Q 010777 413 LWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAAC 488 (501)
Q Consensus 413 iwd~~~~~~~~~~~~---h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~ 488 (501)
|||+.+++....+++ |.+....+...|.|.|||+...|.++.++|+.+|+++....+++ .|+.+-|.+|=++|++.
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence 999999999999876 55677889999999999999999999999999999999888876 48999999999999999
Q ss_pred ECCCeEEEEEe
Q 010777 489 FANHTVCVLDF 499 (501)
Q Consensus 489 ~~d~~v~v~~~ 499 (501)
+.||+|.||-+
T Consensus 702 sgDgCIFvW~l 712 (1080)
T KOG1408|consen 702 SGDGCIFVWKL 712 (1080)
T ss_pred cCCceEEEEEC
Confidence 99999999975
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.4e-28 Score=226.66 Aligned_cols=285 Identities=19% Similarity=0.370 Sum_probs=234.0
Q ss_pred CCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 010777 151 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 230 (501)
Q Consensus 151 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 230 (501)
.|..-|.++++|...++++|||. |.|+|||+...... . |+.-+. + ......|.++...|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-~----PvsqLd---c----l~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-S----PVSQLD---C----LNRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-C----cccccc---c----cCcccceeeeEecCCCceEEec
Confidence 48888999999999999999975 78999999753211 0 100000 0 0113458899999999999999
Q ss_pred eCCCeEEEEECCCc---eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCc
Q 010777 231 SYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 307 (501)
Q Consensus 231 ~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (501)
+.-.++.|||+... ++..+....-+.++|+.+|+.+..++|..||.|.|||+.+...
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~-------------------- 543 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL-------------------- 543 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee--------------------
Confidence 99999999997643 2333444445678899999999999999999999999976532
Q ss_pred eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 308 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 308 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
++.|.||...+.||.+++||..|.||+-|++||.||+++++.+.... ....|+++.++
T Consensus 544 ---------------------VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~c 601 (705)
T KOG0639|consen 544 ---------------------VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYC 601 (705)
T ss_pred ---------------------eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccC
Confidence 45678899999999999999999999999999999999987765432 34689999999
Q ss_pred CCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 010777 388 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 467 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~ 467 (501)
|++. +|+.|-.++.+-|-... +...+.+.-|...|.++.|++.|+|+++.|.|..+-.|...-|..+...
T Consensus 602 P~~d---------WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 602 PTGD---------WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred CCcc---------ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 9986 79999999999888765 4445677779999999999999999999999999999999988877777
Q ss_pred ecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 468 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 468 ~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.....|+++..|.|.++|++|+.++.-.||.+.
T Consensus 672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 777789999999999999999999999998763
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.2e-27 Score=227.01 Aligned_cols=346 Identities=24% Similarity=0.380 Sum_probs=254.9
Q ss_pred CceEEccCCccceeEEEECCCCC---EEEEEECCCcEEEEecCCCCCCC---------CCCCCCceEEEEEee------c
Q 010777 144 SDVTILEGHTSEVCACAWSPAGS---LLASGSGDSTARIWTIADGTSNG---------GAQNGPLNVLVLKHV------K 205 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~---~l~sgs~D~~i~iWd~~~~~~~~---------~~~~~~~~~~~~~~~------~ 205 (501)
+.+..|.||.+.|.+++|...+. +|||+|.|..||||.+.-+.... .....+.. .....+ .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f-~~l~~i~~~is~e 260 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF-MILEEIQYRISFE 260 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee-eeeeeEEEEEehh
Confidence 34678999999999999988654 89999999999999875432111 01111110 111111 1
Q ss_pred cccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc---ee-----EeecCCCCCEEEEEecCCCCEEEEEecCCeE
Q 010777 206 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LK-----CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTA 277 (501)
Q Consensus 206 ~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---~~-----~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i 277 (501)
.-..+|..-|.++.|+|.+..|++++.|.++.+|..... -. ....+..+.-++.-|+|+++.+++-+.-|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 223478899999999999999999999999999986543 11 1223444567899999999999999999999
Q ss_pred EEEeCC-CcceeE--eeeeccCCeEEEecCCC-ceEEEecCCCeEEEEEcCCCcc-eee---ecCCCCceeEEEEcCCCC
Q 010777 278 IVWDVK-TEEWKQ--QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKT---FAGHQGEVNCVKWDPTGS 349 (501)
Q Consensus 278 ~iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~---~~~h~~~v~~v~~~~~~~ 349 (501)
++|-.. ...|.+ .+.+|...|.+++|.+. ..+++.+.|.+-+++-....+. -.. -.-|...++|++|-+...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 999722 233333 34678889999999754 4567889999988876552221 111 124777899999988666
Q ss_pred EEEEEeCCCeEEEEeCCC-------------------------------------------Cc-----------------
Q 010777 350 LLASCSDDVTAKIWNMKQ-------------------------------------------DK----------------- 369 (501)
Q Consensus 350 ~l~s~s~Dg~i~iwd~~~-------------------------------------------~~----------------- 369 (501)
.|++|.+...+|+|+... +.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 788999999999997521 00
Q ss_pred ----------------eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCCeEEEEeeCC
Q 010777 370 ----------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYSLNGH 428 (501)
Q Consensus 370 ----------------~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~h 428 (501)
.++.+-+|.-.|++++.+|++. ++||++.. ..|++|+..+-..++.+.+|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn---------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H 571 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN---------LIASACKSSLKEHAVIRLWNTANWLQVQELEGH 571 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC---------EEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence 0111234556678888888775 78887654 35999999998888899999
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeE-E---EEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 429 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-K---TYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 429 ~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~-~---~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.-.|+.|+|||||+||++.|.|.++.+|........ . ....+. -|+++.|+|++.++|+|+.|++|.||..
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 999999999999999999999999999998654321 1 123343 4899999999999999999999999965
No 101
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=214.46 Aligned_cols=238 Identities=22% Similarity=0.428 Sum_probs=204.4
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeE--------eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeC
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 282 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~~--------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~ 282 (501)
...+-|..|||||+||++|+.||.|.+|+.. ++... .|--+..+|.|+.|+.+...|++|+.||.|++|-+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 4568899999999999999999999999954 32221 23457889999999999999999999999999999
Q ss_pred CCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEE
Q 010777 283 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 362 (501)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~i 362 (501)
+++.+.+.|. ++|+..|+|+.|+.|+..+++++.|.++||
T Consensus 293 ~tG~ClRrFd----------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 293 ETGQCLRRFD----------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred ecchHHHHhh----------------------------------------hhhccCeeEEEEccCcchhhcccccceEEE
Confidence 8887654432 268889999999999999999999999999
Q ss_pred EeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC--CCCCeEEEEECCC
Q 010777 363 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT 440 (501)
Q Consensus 363 wd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spd 440 (501)
--+++++++.+|++|...|+...|.++|. .++++|.||+|++|+..+..++.+++. ...+|+++-.-|-
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~---------~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGH---------HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCC---------eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 99999999999999999999999999996 788999999999999999999887764 3457888877665
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCeeEEEEec----CCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 441 -GEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 441 -g~~lasgs~Dg~i~iw~~~~~~~~~~~~~----~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
-..++.+...++|.|-++. |++++++.. .+...+++.||.|.++.+.+.|+.++-|.+
T Consensus 404 npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 4678888999999999874 788888854 245778899999999999999998877654
No 102
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=7.2e-26 Score=209.19 Aligned_cols=338 Identities=20% Similarity=0.329 Sum_probs=249.9
Q ss_pred CceEEccCCccceeEEEECCCCCEEEEEECCC--------cEEEEec------------CCCCC-C--CCCCCCCceE--
Q 010777 144 SDVTILEGHTSEVCACAWSPAGSLLASGSGDS--------TARIWTI------------ADGTS-N--GGAQNGPLNV-- 198 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~--------~i~iWd~------------~~~~~-~--~~~~~~~~~~-- 198 (501)
...+.+.||+..|.|++.+|+.-+++||-.-| .+||||. ..+.. . .+...+.+-.
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 34456778999999999999999999877666 4999992 22200 0 0001111000
Q ss_pred -------EE-----EEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee----EeecCC-CCCEEEEEe
Q 010777 199 -------LV-----LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK----CTLSKH-KGPIFSLKW 261 (501)
Q Consensus 199 -------~~-----~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~----~~~~~h-~~~V~~l~~ 261 (501)
+. .+...+........|....|+|.+.-++....-+.+.+|+..+... ..+.++ +.-|.+++|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 00 0001111122245577889999665555555568999999876422 233333 357999999
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCc-----------ce-
Q 010777 262 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR-----------PI- 329 (501)
Q Consensus 262 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-----------~~- 329 (501)
.++|+ +++|.++|.|.||+..+....++...|.+.+.++....+..+++++.|..|..|+-.-.+ ++
T Consensus 255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iR 333 (626)
T KOG2106|consen 255 LENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIR 333 (626)
T ss_pred cCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCee
Confidence 99986 789999999999999888888777799999999998888888889999999999832110 11
Q ss_pred ----------------------------eeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCE
Q 010777 330 ----------------------------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 381 (501)
Q Consensus 330 ----------------------------~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v 381 (501)
.+..+|......++.+|+..+++||+.|+.+++|+ ..+++-+. ....++
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~ 410 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPA 410 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCce
Confidence 12246778888999999999999999999999999 34444332 235678
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010777 382 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 461 (501)
Q Consensus 382 ~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~ 461 (501)
.++.|+|.| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||.||.|+.|+||-+...
T Consensus 411 ~~~~fhpsg----------~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 411 ECADFHPSG----------VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eEeeccCcc----------eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 899999987 589999999999999998666555554 889999999999999999999999999998754
Q ss_pred e-eE---EEEecCCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 462 K-IV---KTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 462 ~-~~---~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
. .+ ....+ ..|+.+.||+|+++|.+-+.|-.|..|
T Consensus 480 g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 480 GRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence 3 22 22233 569999999999999999999999888
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=214.79 Aligned_cols=236 Identities=25% Similarity=0.381 Sum_probs=203.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEe
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 290 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 290 (501)
...++++...+....+++|+.|..+.++|... +....+.||...|+.+.|+|+...+++++.|..|++|.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--- 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--- 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---
Confidence 34688888888888999999999999999764 55678999999999999999999999999999999997654321
Q ss_pred eeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 010777 291 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 370 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~ 370 (501)
......|..+|+.+..+|.|.||++++.||++.+.|++++..
T Consensus 296 --------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 296 --------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred --------------------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 123456889999999999999999999999999999999988
Q ss_pred eeeccc--CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEe
Q 010777 371 VHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 448 (501)
Q Consensus 371 ~~~~~~--~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs 448 (501)
+..... ..-.+++.+|+|+|- ++.+|..||.|+|||+..+..+..|.+|.++|..|+|+.+|.|||++.
T Consensus 338 lt~vs~~~s~v~~ts~~fHpDgL---------ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 338 LTVVSDETSDVEYTSAAFHPDGL---------IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred EEEEeeccccceeEEeeEcCCce---------EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 765443 233588999999994 899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCeeEEEEecCC--CEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 449 LDKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 449 ~Dg~i~iw~~~~~~~~~~~~~~~--~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
.|+.|++||++.-+..+++.-.. .+.+++|.+.|++|++++.+-.|+++
T Consensus 409 dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 409 DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999988888876533 59999999999999999766444443
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.8e-28 Score=202.32 Aligned_cols=254 Identities=26% Similarity=0.414 Sum_probs=196.9
Q ss_pred EccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCC
Q 010777 148 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGT 225 (501)
Q Consensus 148 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~~ 225 (501)
+-.+|.+.|..+...--|++|||++.|++|||+.+..+.. ...+ ....+|+++|..++|-. -|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----------s~ll----~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----------SKLL----AELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----------ceee----eEecCCCCCeeEEeecccccCc
Confidence 3457999999999888899999999999999999875431 0111 23345789999999976 799
Q ss_pred EEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEecCCC--CEEEEEecCCeEEEEeCCCc-ceeEeeeeccCCeE
Q 010777 226 LLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTL 299 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~~~~ 299 (501)
+|+|+++||.|.||..++. .......|...|.+++|.|.+ -.|+++++||.|.|.+.++. .+..
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---------- 141 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---------- 141 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc----------
Confidence 9999999999999997654 334667899999999999864 57889999999999987643 1110
Q ss_pred EEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC---C-----------CEEEEEeCCCeEEEEeC
Q 010777 300 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---G-----------SLLASCSDDVTAKIWNM 365 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~-----------~~l~s~s~Dg~i~iwd~ 365 (501)
-+....|.-.|++++|.|- | +.|++|+.|..|+||+.
T Consensus 142 -----------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~ 192 (299)
T KOG1332|consen 142 -----------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF 192 (299)
T ss_pred -----------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec
Confidence 1123456666777777664 3 56999999999999998
Q ss_pred CCCce--eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEeeCCCCCeEEEEECCC
Q 010777 366 KQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 366 ~~~~~--~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~spd 440 (501)
..+.. -+.|.+|..-|..++|.|.-.. .+..||++|.||+|.||..+.... ...+.....+++.++||+.
T Consensus 193 ~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 193 DSDSWKLERTLEGHKDWVRDVAWAPSVGL-----PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred CCcchhhhhhhhhcchhhhhhhhccccCC-----CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence 87643 3568899999999999997531 235799999999999998762211 1123335578999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 010777 441 GEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 441 g~~lasgs~Dg~i~iw~~~ 459 (501)
|++|+.++.|+.|.+|.-.
T Consensus 268 Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 268 GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccEEEEecCCcEEEEEEeC
Confidence 9999999999999999743
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=4e-27 Score=215.50 Aligned_cols=257 Identities=26% Similarity=0.523 Sum_probs=202.6
Q ss_pred ccCCccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC-CCE
Q 010777 149 LEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTL 226 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-~~~ 226 (501)
.-.|.+.|+.+++-|+. ..+||++..+.|.|||................-+ .+.+| .+.=+.|+|++. .-.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl---~L~gH----~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDL---RLKGH----EKEGYGLSWNRQQEGT 192 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCce---EEEee----ccccccccccccccee
Confidence 34599999999999975 5788888999999999876543322211100011 12222 333566999984 457
Q ss_pred EEEEeCCCeEEEEECCCc--------eeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCC
Q 010777 227 LATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 297 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 297 (501)
|++|+.|+.|++||++.. ....+.+|...|..++|++.. ..|.+++.|+.+.|||++++.
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~----------- 261 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT----------- 261 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-----------
Confidence 899999999999997532 345688999999999999965 467889999999999998631
Q ss_pred eEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-ceeeecc
Q 010777 298 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQD-KYVHDLR 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~-~~~~~~~ 375 (501)
.++.....+|.++|+|++|+|-+ .+|||||.|++|.+||++.- ++++++.
T Consensus 262 ----------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 262 ----------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred ----------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 22334556899999999999965 56899999999999999875 4678899
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--------------CeEEEEeeCCCCCeEEEEECCCC
Q 010777 376 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAFSPTG 441 (501)
Q Consensus 376 ~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~spdg 441 (501)
+|...|..|.|+|+.. .+||+++.|+.+.+||+.. .++++...||+..|..+.|+|+.
T Consensus 314 ~H~dev~~V~WSPh~e--------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNE--------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred CCCcceEEEEeCCCCC--------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 9999999999999864 4899999999999999853 13568889999999999999998
Q ss_pred CE-EEEEeCCCcEEEEeCC
Q 010777 442 EY-LASGSLDKSMHIWSLK 459 (501)
Q Consensus 442 ~~-lasgs~Dg~i~iw~~~ 459 (501)
.+ |+|.+.|+.+.||...
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 76 5788999999999865
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8.3e-28 Score=222.46 Aligned_cols=252 Identities=23% Similarity=0.409 Sum_probs=190.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce------eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCC
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 283 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~ 283 (501)
.+++.|+++++.|.|-.|+||+.|-.|++||..+.- ..........|.++.|++.|..|++.+.....+|+|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 457889999999999999999999999999987631 11223344578999999999999999988999999965
Q ss_pred CcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEE
Q 010777 284 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKI 362 (501)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~i 362 (501)
..++.....+ |. |+-| +..-.||...++|.+|+|+. ..|+||+.||++||
T Consensus 245 G~~~~e~~KG---------------------DQ--YI~D------m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 245 GFEIVEFSKG---------------------DQ--YIRD------MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred Cceeeeeecc---------------------ch--hhhh------hhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 5544332221 11 1112 12346899999999999986 46899999999999
Q ss_pred EeCCCCc-eeeecc-----cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEeeCCCC--C
Q 010777 363 WNMKQDK-YVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHRE--P 431 (501)
Q Consensus 363 wd~~~~~-~~~~~~-----~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~--~ 431 (501)
|++...+ ....++ +..-++++++|+|+|. ++|+|..||.|.+|+...... .+.-.+|.. .
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~---------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK---------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcc---------hhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 9987543 222222 2233678999999997 799999999999999764322 233457876 8
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEec---CCCEEEEEECCCCCEEEEEEC------CCeEEEEEe
Q 010777 432 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG---NGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 499 (501)
Q Consensus 432 v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~-~~~~~~~---~~~i~~~~ws~~g~~la~~~~------d~~v~v~~~ 499 (501)
|+||+||+||++|++-|.|+++++||++..+ .+.+..+ .-.-+.++|||+.++|++|.. -|++++||-
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 9999999999999999999999999999754 4444443 223578999999999998743 356888874
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-27 Score=202.25 Aligned_cols=247 Identities=26% Similarity=0.478 Sum_probs=194.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEecC--CCCEEEEEecCCeEEEEeCCC
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT 284 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~i~iwd~~~ 284 (501)
|...|..+...--|++|++++.|++|+|+.... .+..++.+|.+||+.++|.. -|..|++|+.||.|.||.-.+
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 344566665666789999999999999998643 45678999999999999965 789999999999999998776
Q ss_pred cceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC--CCEEEEEeCCCeEEE
Q 010777 285 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 362 (501)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~i~i 362 (501)
+.+.+ ...+..|...|++++|-|. |-+|++++.||.|.|
T Consensus 90 g~w~k---------------------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 90 GRWTK---------------------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred Cchhh---------------------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 65432 2345678999999999886 567999999999999
Q ss_pred EeCCCC-c--eeeecccCCCCEEEEEEcCCCC---CCCC-CC-CcEEEEEEeCCCeEEEEeCCCCe--EEEEeeCCCCCe
Q 010777 363 WNMKQD-K--YVHDLREHSKEIYTIRWSPTGS---GTNN-PN-QQLILASASFDSTVKLWDVELGK--LLYSLNGHREPV 432 (501)
Q Consensus 363 wd~~~~-~--~~~~~~~~~~~v~~i~~~p~g~---~~~~-~~-~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v 432 (501)
.+.+.. . .......|.-.|.+++|.|... ...+ +. .-.-|++|+.|+.|+||+..+++ .-.++.+|.+.|
T Consensus 131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV 210 (299)
T ss_pred EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence 987754 1 1233457888999999999732 1111 11 12458999999999999988763 223488999999
Q ss_pred EEEEECCCC----CEEEEEeCCCcEEEEeCCCC------eeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 433 YSLAFSPTG----EYLASGSLDKSMHIWSLKEG------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 433 ~~l~~spdg----~~lasgs~Dg~i~iw~~~~~------~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
..++|.|.- .+||++|.||+|.||..... +++.. ....++.++||+.|+.||.++.|..|.+|-
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 999999974 57999999999999987521 22333 245689999999999999999999999984
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=220.38 Aligned_cols=241 Identities=23% Similarity=0.351 Sum_probs=210.3
Q ss_pred EeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc--eeEeeeeccCCeEEEecC-CCceEEEecCCCeEEEEEc
Q 010777 247 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKI 323 (501)
Q Consensus 247 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~ 323 (501)
..+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+++..++|. ++..+++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3466799999999999999999999999999999987665 667777888899999995 5677889999999999999
Q ss_pred CCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEE
Q 010777 324 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 403 (501)
Q Consensus 324 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~ 403 (501)
...+...++.||+..|+++.|......+++|+.|.+|++||+....+..++. ....+..|..++ ..++
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~-----------~~~~ 316 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI-----------SDVI 316 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEecc-----------eeee
Confidence 9999999999999999999999877779999999999999999877766543 234455555542 2578
Q ss_pred EEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-----CCEEEEEE
Q 010777 404 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-----GGIFEVCW 478 (501)
Q Consensus 404 sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~-----~~i~~~~w 478 (501)
+|-.|++||+||++...++.++..+. .|+++..+++|.-|.+++.|.++.+.|+++..+..++... ..++.++|
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 99999999999999999999998775 8999999999999999999999999999999888887543 24788999
Q ss_pred CCCCCEEEEEECCCeEEEEEee
Q 010777 479 NKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 479 s~~g~~la~~~~d~~v~v~~~~ 500 (501)
||+|.++|+|+.||.|+||++.
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred CCCCceeeeccCCCcEEEEEcc
Confidence 9999999999999999999974
No 109
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.6e-27 Score=222.89 Aligned_cols=295 Identities=24% Similarity=0.372 Sum_probs=233.6
Q ss_pred CCcccccCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCC
Q 010777 135 ASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 214 (501)
Q Consensus 135 ~~~~~~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (501)
+.....+|..+...++||++.|.||+..|.|.+|++||.||+||||.+.+|.+.. ++.. ...
T Consensus 382 p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------------~~~~-----d~~ 443 (733)
T KOG0650|consen 382 PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------------TVQF-----DSE 443 (733)
T ss_pred hhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------------EEee-----cce
Confidence 3344557778888999999999999999999999999999999999999886532 2111 246
Q ss_pred eEEEEECCCCCE--EEEEeCCC--------------------------------eEEEEECCC-----ceeEeecCCCCC
Q 010777 215 VTTLDWNGEGTL--LATGSYDG--------------------------------QARIWSTNG-----DLKCTLSKHKGP 255 (501)
Q Consensus 215 V~~~~~s~~~~~--l~sg~~dg--------------------------------~i~iw~~~~-----~~~~~~~~h~~~ 255 (501)
|.|++|+|.+.. ||.+-... .+..|.... .-++....|..+
T Consensus 444 I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~ 523 (733)
T KOG0650|consen 444 IRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKS 523 (733)
T ss_pred eEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCc
Confidence 899999987643 33332222 222333210 012344568899
Q ss_pred EEEEEecCCCCEEEEEecC---CeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeee
Q 010777 256 IFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 332 (501)
Q Consensus 256 V~~l~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 332 (501)
|..+.||..|.||++...+ ..|.|+++.....+..|....+.+..+.|++...+....+...|++|++.....++.+
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKL 603 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHH
Confidence 9999999999999987664 5789999987777777777788899999988777666677789999999887777777
Q ss_pred cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeE
Q 010777 333 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 411 (501)
Q Consensus 333 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i 411 (501)
......|..++.+|.|..|+.|+.|+.+..+|+.- .++.++++.|...+++|+|++.-. ++++|+.||++
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP---------Lfas~sdDgtv 674 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP---------LFASGSDDGTV 674 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc---------eeeeecCCCcE
Confidence 66677899999999999999999999999999874 467788999999999999988654 89999999999
Q ss_pred EEEeCC-------C--CeEEEEeeCCCCC----eEEEEECCCCCEEEEEeCCCcEEEE
Q 010777 412 KLWDVE-------L--GKLLYSLNGHREP----VYSLAFSPTGEYLASGSLDKSMHIW 456 (501)
Q Consensus 412 ~iwd~~-------~--~~~~~~~~~h~~~----v~~l~~spdg~~lasgs~Dg~i~iw 456 (501)
.||.-. + --++..+.+|... |.++.|||.-.||.++|.||+|++|
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 998532 1 1245677888755 8999999999999999999999998
No 110
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=199.57 Aligned_cols=261 Identities=17% Similarity=0.343 Sum_probs=208.8
Q ss_pred EEEEEeCCCeEEEEECCCc-------------eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeee
Q 010777 226 LLATGSYDGQARIWSTNGD-------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 292 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~-------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 292 (501)
.|+.|++...|.-+.+... ....+..|.+++++|+. ++.|+++||.|-+|+|||++.......+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 3667777777766654321 12346789999999987 47899999999999999999998888899
Q ss_pred eccCCeEEEecCCCc---eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 010777 293 FHSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 369 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~ 369 (501)
.|.+.++++.|.... .+++++.||.|.+|+.+....+..+.+|.+.|+.+++||.|++-++.+.|+.+++||+-+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 999999999987655 79999999999999999999999999999999999999999999999999999999998877
Q ss_pred eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeC
Q 010777 370 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 449 (501)
Q Consensus 370 ~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~ 449 (501)
....++-. ...+.|.|+|.|. .++.++. ..|-+|.+.+......+... ..+.++.|- ++.+|++|+.
T Consensus 161 ~a~v~~L~-~~at~v~w~~~Gd---------~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d 227 (362)
T KOG0294|consen 161 VAFVLNLK-NKATLVSWSPQGD---------HFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGD 227 (362)
T ss_pred cceeeccC-CcceeeEEcCCCC---------EEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecC
Confidence 54433322 2234589999886 3444443 46889988876655544322 446777775 5678999999
Q ss_pred CCcEEEEeCCCCeeEEEEecCC-CEEEEE--ECCCCCEEEEEECCCeEEEEEeeC
Q 010777 450 DKSMHIWSLKEGKIVKTYTGNG-GIFEVC--WNKEGDKIAACFANHTVCVLDFRM 501 (501)
Q Consensus 450 Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~--ws~~g~~la~~~~d~~v~v~~~~~ 501 (501)
|+.|.+||..++.....+..+. .|-++. =+|++.+|++++.||.|+|||++|
T Consensus 228 ~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 228 NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 9999999999887777776543 465555 367889999999999999999986
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=202.19 Aligned_cols=273 Identities=26% Similarity=0.406 Sum_probs=214.7
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCC---
Q 010777 208 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--- 283 (501)
Q Consensus 208 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~--- 283 (501)
+.+|...|+.++-...-..+.+++.|.+.+||.++ +.+...+.+|.+.|.+++|++.+..+++++.|++..||...
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 34556778887776666689999999999999987 46677899999999999999999999999999999999621
Q ss_pred -CcceeEeeeeccCCeEEEec-CCCceEEEe---cCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCC
Q 010777 284 -TEEWKQQFEFHSGPTLDVDW-RNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 358 (501)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg 358 (501)
...... -..|.+.- .... .....+..+ ++..+|+ .|+..|.||.+.|.+..|-..|+.+++++.|.
T Consensus 224 ~vP~~~a-~~~hSsEe-E~e~sDe~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 224 EVPSNNA-PSDHSSEE-EEEHSDEHNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred cCCCCCC-CCCCCchh-hhhcccccccccccccccCCceee-------eeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 100000 00000000 0000 011111111 1112333 46778999999999999999999999999999
Q ss_pred eEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEE
Q 010777 359 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAF 437 (501)
Q Consensus 359 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~ 437 (501)
+..+||+.++.+++.+.+|....+.++-+|... ++++.|.|.+.|+||.+.. ..+..|.||...|+++.|
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQr---------LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQR---------LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcce---------EEEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 999999999999999999999988887767643 7889999999999999833 346778999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 438 SPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 438 spdg~~lasgs~Dg~i~iw~~~~~~-~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.-+ ..+++||.|.+|+|||+++.. .+.++.....++-++.+..+.+||.-..|..|++||+
T Consensus 366 ~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 366 NTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 876 458999999999999999854 5788888888999999999999999999999999997
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=224.21 Aligned_cols=231 Identities=24% Similarity=0.438 Sum_probs=199.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-------eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 222 GEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
|.++||+|||.||.|++|+.... ....+..|.+-|..+....+++.|+|+|.|-+|++|+.....
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence 46788999999999999986431 244677899999999988899999999999999999976431
Q ss_pred cCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEE-cCCCCEEEEEeCCCeEEEEeCCCC--cee
Q 010777 295 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQD--KYV 371 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s~s~Dg~i~iwd~~~~--~~~ 371 (501)
..++.++..|..+|.|+++ -++..++|+||-|+.|.+||++++ ..+
T Consensus 107 -------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~ 155 (735)
T KOG0308|consen 107 -------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV 155 (735)
T ss_pred -------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence 0123456779999999999 788899999999999999999876 222
Q ss_pred e--------ecc-cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCC
Q 010777 372 H--------DLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 442 (501)
Q Consensus 372 ~--------~~~-~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 442 (501)
. .+. ++...|++++-.+.|. ++++|+..+.|++||.++++.+..+.||+..|.+|..++||+
T Consensus 156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t---------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGT---------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred hhccccccccCCCCCccceeeeecCCcce---------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence 2 223 6677899999888875 899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEecC-CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 443 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~~~~~~~~~~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.++++|.||+|++||+...+.+.++..+ .+++++.-+|+=+++.+|+.||.|..=|+|
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 9999999999999999999999988654 469999999999999999999999887765
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-27 Score=227.57 Aligned_cols=287 Identities=23% Similarity=0.384 Sum_probs=222.0
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCEEEEEeCCC
Q 010777 156 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDG 234 (501)
Q Consensus 156 V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l~sg~~dg 234 (501)
.++|+.+++-..|+.+|. ..++||.+....... +.+. + .+...........+.|+. +.++|++++.+|
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~-----~~~~---~--~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSE-----KCNH---R--FKTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCc-----ceee---e--cccccceeeehhhcccccchhhhheeecCCC
Confidence 567777888777776653 578888765432110 1111 1 011111223455677875 568999999999
Q ss_pred eEEEEECCC----ceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC--CCc
Q 010777 235 QARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNV 307 (501)
Q Consensus 235 ~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~ 307 (501)
.|.+||++. .+...|..|+..|.++.|++.. ++|++||.||+|++||++...-+.++......+.++.|. ...
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc
Confidence 999999875 3345788999999999999865 678999999999999999999888898888889998885 467
Q ss_pred eEEEecCCCeEEEEEcCCC-cceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeecccCCCCEEEE
Q 010777 308 SFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTI 384 (501)
Q Consensus 308 ~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~~v~~i 384 (501)
.|+++.+.|.+..||++.. ++...+.+|.++|.|+.|+|++.+|||||.|++|+|||+.+.+. .+++ ....++.+|
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rV 269 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRV 269 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeee
Confidence 8999999999999999875 46678889999999999999999999999999999999986543 2222 234678899
Q ss_pred EEcCCCCCCCCCCCcEEEEEEe--CCCeEEEEeCCCCe-EEEEeeCCCCCeEEEEECC-CCCEEEEEeCCCcEEEEeCCC
Q 010777 385 RWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 385 ~~~p~g~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp-dg~~lasgs~Dg~i~iw~~~~ 460 (501)
+|-|.-+ +.||+++ .|-.|+|||++..- +..++..|+..++.++|.. |...|.++|.||+|..-.+++
T Consensus 270 kWRP~~~--------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 270 KWRPARS--------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeccCcc--------chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 9998764 4677776 47789999998654 4467889999999999965 456788999999988777665
Q ss_pred Ce
Q 010777 461 GK 462 (501)
Q Consensus 461 ~~ 462 (501)
+.
T Consensus 342 at 343 (839)
T KOG0269|consen 342 AT 343 (839)
T ss_pred cc
Confidence 54
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.1e-25 Score=194.81 Aligned_cols=300 Identities=19% Similarity=0.342 Sum_probs=226.0
Q ss_pred ccCCccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CCCE
Q 010777 149 LEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTL 226 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~ 226 (501)
-+.|.++|+++.+.|. |++++||+.||.|.+||+++.......-.-. ...++ ..+.+.++|...|.++.|-| |.-+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~-k~~c~-v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA-KHKCI-VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee-heeee-ccccCCccceeeeeeeEEeeecCce
Confidence 4569999999999995 8999999999999999998654211100000 00000 12345677888999999998 6778
Q ss_pred EEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCC--C-EEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEec
Q 010777 227 LATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG--D-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 303 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~--~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (501)
|.+++.|.+++|||++...........+.|++-+|+|-. + .+++|..|-.|++-|+.+|.+..++.+|.+.++++.|
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 999999999999999876555444567889999998843 3 4667777889999999999999999999999999999
Q ss_pred CCC--ceEEEecCCCeEEEEEcCCC-cce--------------eeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 304 RNN--VSFATSSTDNMIYVCKIGEN-RPI--------------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 304 ~~~--~~~~~~~~d~~i~~~~~~~~-~~~--------------~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
.+. ..+++++.|+.+++||++.. .+. ++-..|.+.|+.++|..++.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 754 45678999999999998753 111 2234678899999999999999999999999999987
Q ss_pred CCceee-ecc--cCCCCEEEEEEcC-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCC
Q 010777 367 QDKYVH-DLR--EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 442 (501)
Q Consensus 367 ~~~~~~-~~~--~~~~~v~~i~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 442 (501)
.++... .+- .|... ..+++.- .+. .-.++---.++.+.++++-.+..+..+.+|...|.|.+|-|+=+
T Consensus 277 ~G~ntl~~~g~~~~n~~-~~~~~~~~~~~-------s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQT-TSFAVHIQSMD-------SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE 348 (397)
T ss_pred cCccccccccccccccc-ccceEEEeecc-------cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh
Confidence 765321 110 01110 1111110 000 00222233458899999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 010777 443 YLASGSLDKSMHIWSL 458 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~ 458 (501)
-+.+|..|+.|..|..
T Consensus 349 ~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhccccCCccccccc
Confidence 9999999999999986
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=9e-27 Score=202.86 Aligned_cols=256 Identities=18% Similarity=0.334 Sum_probs=196.8
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
+++|-.|..+|+++.|+|..+.|+||+.|++|+++|+...... +.+ ..-....+|.++.|+|.|.
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK-------------rA~--K~~qd~~~vrsiSfHPsGe 229 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK-------------RAF--KVFQDTEPVRSISFHPSGE 229 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHH-------------HHH--HHhhccceeeeEeecCCCc
Confidence 6788899999999999999999999999999999998643210 000 1112246799999999999
Q ss_pred EEEEEeCCCeEEEEECCCceeEe----ecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 226 LLATGSYDGQARIWSTNGDLKCT----LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
+|+.|....++++||++...... -.+|++.|+++.+++.++..++||.||.|++||--++.++.++.
T Consensus 230 fllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--------- 300 (430)
T KOG0640|consen 230 FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--------- 300 (430)
T ss_pred eEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH---------
Confidence 99999999999999987643321 24699999999999999999999999999999976665544332
Q ss_pred ecCCCceEEEecCCCeEEEEEcCCCcceeeecCCC-CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCC
Q 010777 302 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 380 (501)
Q Consensus 302 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 380 (501)
..|. ..|++..|..+|+++++.+.|..+++|.+.+++++....+....
T Consensus 301 -------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t 349 (430)
T KOG0640|consen 301 -------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT 349 (430)
T ss_pred -------------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc
Confidence 2354 46899999999999999999999999999999998877654211
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
-. .. -.....++....++|.---..+.+.-||.+++..+.. --+|.+++..+.-||.+.-+++||.|-++++|-.+
T Consensus 350 gr-q~--~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 350 GR-QK--HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cc-hh--hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 00 00 0011122223334554444557789999998765433 24799999999999999999999999999999643
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-25 Score=194.74 Aligned_cols=283 Identities=22% Similarity=0.376 Sum_probs=205.3
Q ss_pred ccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCCE
Q 010777 149 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL 226 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~~~ 226 (501)
-.+|.+-|+++.|.+-|+.+||||.|++|+|||....... . .+..+...|.+.|..+.|-+ -|+.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---------W----~~Ts~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---------W----SCTSSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---------e----EEeeeEEecCCcEEEEEecCccccce
Confidence 3579999999999999999999999999999997543321 1 11223334678899999965 4899
Q ss_pred EEEEeCCCeEEEEECCC----------ceeEeecCCCCCEEEEEecCC--CCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 227 LATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
++++++|+++.||.... ....++....+.|+.++|.|. |-.|++++.||++|||+...---..
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs----- 150 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS----- 150 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc-----
Confidence 99999999999997521 123456677889999999985 5678999999999999864321111
Q ss_pred cCCeEEEecCCCceEEEecCCCeEEEEEcCCCc--ceeeecCCCCceeEEEEcCC---CCEEEEEeCC-----CeEEEEe
Q 010777 295 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPT---GSLLASCSDD-----VTAKIWN 364 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~---~~~l~s~s~D-----g~i~iwd 364 (501)
-|.+...- .+.....+..+..|+.|+|. .++||.|+.+ +.+.||.
T Consensus 151 -------------------------~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 151 -------------------------QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred -------------------------cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 12221110 01112235567789999875 3678888877 4788887
Q ss_pred CCCC----ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--------------------e
Q 010777 365 MKQD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------------K 420 (501)
Q Consensus 365 ~~~~----~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--------------------~ 420 (501)
.... ..+.++..|..+|+.|+|.|+-.. ...+||+++.|| |+||++... +
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 5433 245677899999999999997432 235899999999 999998631 2
Q ss_pred EEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC---CeeEEEEecCCCEEEEEECC
Q 010777 421 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE---GKIVKTYTGNGGIFEVCWNK 480 (501)
Q Consensus 421 ~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~---~~~~~~~~~~~~i~~~~ws~ 480 (501)
.+..+.+|.+.|+.+.|+-.|..|++.|.||.|++|...- .+....+..++.+....|++
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 3456788999999999999999999999999999997542 34444555554444444433
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5e-28 Score=232.33 Aligned_cols=256 Identities=28% Similarity=0.507 Sum_probs=219.7
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC
Q 010777 163 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN 242 (501)
Q Consensus 163 p~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~ 242 (501)
|.+.++.++..+..+++|+.... ..|+..|.++..-..++.+++|+.|..+-+|...
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~ 58 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG 58 (825)
T ss_pred Ccccccceeeeeeccccccchhh-----------------------hhhhhhhceeeeeccceeeccCCCceeecccccc
Confidence 33445556666777888886432 2345567777776678899999999999999865
Q ss_pred C-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEE
Q 010777 243 G-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 321 (501)
Q Consensus 243 ~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 321 (501)
. .....+.+|.++|-+|.|++....|++|+.+|+|++||+....
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk----------------------------------- 103 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK----------------------------------- 103 (825)
T ss_pred CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-----------------------------------
Confidence 4 2344689999999999999999999999999999999997653
Q ss_pred EcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEE
Q 010777 322 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 401 (501)
Q Consensus 322 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~ 401 (501)
.++++.||...+.+++|+|-+.++|+|+.|..+++||.+...+.+.+.+|...+..++|+|+|. +
T Consensus 104 ------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr---------~ 168 (825)
T KOG0267|consen 104 ------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR---------W 168 (825)
T ss_pred ------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------e
Confidence 2456778999999999999999999999999999999999999999999999999999999997 8
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCEEEEEECC
Q 010777 402 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNK 480 (501)
Q Consensus 402 l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~ 480 (501)
+++|+.|.+++|||+..|+.+.+++.|.+.|..+.|+|..-++++||.|++|++||+++..++..... -.+|-+++|+|
T Consensus 169 v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 169 VASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred eeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999998887766544 34689999999
Q ss_pred CCCEEEEEECC
Q 010777 481 EGDKIAACFAN 491 (501)
Q Consensus 481 ~g~~la~~~~d 491 (501)
+|+.+++|...
T Consensus 249 ~~~~~~~G~q~ 259 (825)
T KOG0267|consen 249 DGKIVLSGEQI 259 (825)
T ss_pred CceeeecCchh
Confidence 99988887543
No 118
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.5e-24 Score=205.00 Aligned_cols=286 Identities=14% Similarity=0.127 Sum_probs=205.0
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCC
Q 010777 165 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNG 243 (501)
Q Consensus 165 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~ 243 (501)
+.+++|++.|+.|++||+.++.. ...+.. ...+.+++|+|++..+ ++++.++.|++|+...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-------------~~~~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-------------TRTFPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-------------EEEEEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 35788999999999999876531 111111 1235679999999876 5677889999999865
Q ss_pred c-eeEeecCCCCCEEEEEecCCCCEEEEE-ecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC-ceEEEecCC-CeEE
Q 010777 244 D-LKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTD-NMIY 319 (501)
Q Consensus 244 ~-~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d-~~i~ 319 (501)
. ....+..+.. +..++|+|+++.++++ +.|+.+++||+.+...+..+... ..+..+.|.++ ..++++..+ ..++
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 63 GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEE
Confidence 3 3344544444 4678999999977654 56899999999987766665432 23455666543 445555544 4567
Q ss_pred EEEcCCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeeecccCC-------CCEEEEEEcCCCC
Q 010777 320 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHS-------KEIYTIRWSPTGS 391 (501)
Q Consensus 320 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~-------~~v~~i~~~p~g~ 391 (501)
.|+......+..+. ....+.+++|+|++++|+ ++..++.|++||+.+++.+..+..+. .....++|+|++.
T Consensus 141 ~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 141 FIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 77887666554432 223457899999999875 55569999999999887766543221 1234577888875
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEecC
Q 010777 392 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN 470 (501)
Q Consensus 392 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasg-s~Dg~i~iw~~~~~~~~~~~~~~ 470 (501)
.++++.+.++.|.+||+++++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++++..+...
T Consensus 220 --------~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 220 --------TAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred --------EEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 334545567789999999888776554 34578999999999999876 46899999999999999988877
Q ss_pred CCEEEEEECC
Q 010777 471 GGIFEVCWNK 480 (501)
Q Consensus 471 ~~i~~~~ws~ 480 (501)
..++.++++|
T Consensus 291 ~~~~~~~~~~ 300 (300)
T TIGR03866 291 RLPWGVVVRP 300 (300)
T ss_pred cccceeEeCC
Confidence 7788998876
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.8e-26 Score=210.01 Aligned_cols=248 Identities=27% Similarity=0.517 Sum_probs=199.2
Q ss_pred cCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCc-----------eeEeecCCCCCEEEEEecCCCC-EEEEEecCCe
Q 010777 210 EKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNGD-----------LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKT 276 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~-----------~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~ 276 (501)
.|.+.|..+.+-|+. ..+++++..+.|.|||.... ...++.+|...-++|+|++... +|++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 356778888888854 56777888999999996421 1237889999889999998654 7899999999
Q ss_pred EEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEe
Q 010777 277 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS 355 (501)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s 355 (501)
|.+||+...... . ..-.+...|.+|...|..++|+|.. .+|++++
T Consensus 202 i~lwdi~~~~~~-------~---------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 202 ICLWDINAESKE-------D---------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred EEEEeccccccC-------C---------------------------ccccceEEeecCCcceehhhccccchhhheeec
Confidence 999998754210 0 0113456788999999999999964 6789999
Q ss_pred CCCeEEEEeCC--CCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCe
Q 010777 356 DDVTAKIWNMK--QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPV 432 (501)
Q Consensus 356 ~Dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v 432 (501)
+|+.+.|||++ +.++.+...+|...+.+++|+|.+. .+|||||.|++|++||+|+. ++++++.+|...|
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~--------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE--------FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC--------ceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 99999999999 5666777889999999999999874 58999999999999999975 4678999999999
Q ss_pred EEEEECCCC-CEEEEEeCCCcEEEEeCCCCe--------------eEEEEecC-CCEEEEEECCCCC-EEEEEECCCeEE
Q 010777 433 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGK--------------IVKTYTGN-GGIFEVCWNKEGD-KIAACFANHTVC 495 (501)
Q Consensus 433 ~~l~~spdg-~~lasgs~Dg~i~iw~~~~~~--------------~~~~~~~~-~~i~~~~ws~~g~-~la~~~~d~~v~ 495 (501)
.+|.|||.. ..||++|.|+++.|||+..-. ++.+..++ ..|.++.|+|.-- .|++.+.|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999975 788999999999999986421 22232333 3489999999876 666778899999
Q ss_pred EEEe
Q 010777 496 VLDF 499 (501)
Q Consensus 496 v~~~ 499 (501)
||..
T Consensus 400 IW~~ 403 (422)
T KOG0264|consen 400 IWQM 403 (422)
T ss_pred Eeec
Confidence 9964
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3e-25 Score=218.97 Aligned_cols=270 Identities=23% Similarity=0.386 Sum_probs=218.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCccee
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 288 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 288 (501)
|...-+.++|.++|.+|++++.||.|++|+.... ...++..+...|++++. .+++|++|+.+++|.+|....++..
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcc
Confidence 4456889999999999999999999999986543 22334447788888765 3458999999999999999887765
Q ss_pred EeeeeccCCeEEEecCC-CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010777 289 QQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~ 367 (501)
..+..-.-|+.++.+.. ...++.+++|-.|.+.+.......+.+.+|.++|.++.|+|.+++||+.+-||.|+||++.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 55555556777777754 45678889999999999999999999999999999999999999999999999999999998
Q ss_pred CceeeecccC--------CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC--CCCCeEEEEE
Q 010777 368 DKYVHDLREH--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAF 437 (501)
Q Consensus 368 ~~~~~~~~~~--------~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~ 437 (501)
+.+..++..- ...+..++|+|++. -|+..+.|+.|++|+.......+.+.. +...+.+++|
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---------~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG---------TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCC---------eEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 8776655431 34567789999965 466777899999999999988887754 4445999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeE
Q 010777 438 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 494 (501)
Q Consensus 438 spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v 494 (501)
||+|+|||+++.||.|.|||+.+.. .......|.+++|.|+++.|-.-...|+.
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~---~~~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHE---RHEFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccch---hccccceeEEEecCCCCCeeEEEeecccc
Confidence 9999999999999999999998722 22234468999999998866555544443
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=219.20 Aligned_cols=285 Identities=23% Similarity=0.350 Sum_probs=223.2
Q ss_pred EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEE--------------------eeccccccCCCCeEEEEECCCCCE
Q 010777 167 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK--------------------HVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 167 ~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
-+.|+|.|++||+|++..+.........++....++ ......-...-.|.+++.||+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 488999999999999976432221111000000000 000000112346999999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecC---CCCEEEEEecCCeEEEEeCCC-cceeEeeeeccCCeEEE
Q 010777 227 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~ 301 (501)
|++|..-|+++||++.. ...+.+..|...|.+|.|+. ..+.|++++.|+-|.+||+.. -.+++++..|...+.++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 99999999999999864 45567789999999999984 246789999999999999854 45678889999999999
Q ss_pred ecCC---CceEEEecCCCeEEEEEcCCCcceeeecCCC-----CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q 010777 302 DWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 373 (501)
Q Consensus 302 ~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 373 (501)
.|.. +...++++.|+.|++-..+.......|..|. ..+..++..|..+++++++.|..|+||++.+++.+..
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 9853 3678899999887654333222223333332 3578899999999999999999999999999999988
Q ss_pred ccc---CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC
Q 010777 374 LRE---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 450 (501)
Q Consensus 374 ~~~---~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D 450 (501)
|++ |.+....+...|.|- |||+...|.++.++|..+|+++..+.||...|+.+.|.+|.+.|++.+.|
T Consensus 634 FKgs~~~eG~lIKv~lDPSgi---------Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPSGI---------YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred ecccccCCCceEEEEECCCcc---------EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 875 556778888888885 89999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCC
Q 010777 451 KSMHIWSLKE 460 (501)
Q Consensus 451 g~i~iw~~~~ 460 (501)
|.|.||.+..
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999999853
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=203.88 Aligned_cols=282 Identities=14% Similarity=0.223 Sum_probs=223.6
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC-EEEEEe
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 231 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~sg~ 231 (501)
.++|+++.|||.-.+|++||.|++++||.+... .+.. +.... -...+|.+++|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~-----lqS~~---------l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPK-----LQSIH---------LEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChh-----heeee---------eccCccceeeecCCCceEEEecc
Confidence 468999999999999999999999999998632 2211 11111 1246799999999999 899999
Q ss_pred CCCeEEEEECCCceeE---eecCCC-CCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCc
Q 010777 232 YDGQARIWSTNGDLKC---TLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 307 (501)
Q Consensus 232 ~dg~i~iw~~~~~~~~---~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (501)
.-...+.||+...... ...++. ..+.....+|++++|+..+..|.|.+-...+++++..+..
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-------------- 343 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-------------- 343 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--------------
Confidence 9999999998654332 233343 3456677799999999999999999988888776544321
Q ss_pred eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCC-CEEEEEE
Q 010777 308 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EIYTIRW 386 (501)
Q Consensus 308 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~ 386 (501)
.+.|..++|+.+++.|+.++.+|.|.+||++...+++.+....+ .-++++.
T Consensus 344 ----------------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~ 395 (514)
T KOG2055|consen 344 ----------------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCI 395 (514)
T ss_pred ----------------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeee
Confidence 35678899999999999999999999999999988887764332 2356777
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC------CeEEEEeeCCCCCeEEEEECCCCCEEEEEeC--CCcEEEEeC
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSL--DKSMHIWSL 458 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~spdg~~lasgs~--Dg~i~iw~~ 458 (501)
++++. +||+||..|.|.|||..+ .+++..+......|++|+|+||++.||.+|. +..+++-.+
T Consensus 396 S~ng~---------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 396 SLNGS---------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred cCCCc---------eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 78876 899999999999999653 4566777777788999999999999988774 678999888
Q ss_pred CCCeeEEEEec----CCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 459 KEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 459 ~~~~~~~~~~~----~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
..-.+...|+. -+.+.+++|||.|-+||.|-..|.|.+|-+.
T Consensus 467 PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 467 PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 87766666654 2458999999999999999999999999763
No 123
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5e-26 Score=223.34 Aligned_cols=242 Identities=21% Similarity=0.369 Sum_probs=179.3
Q ss_pred eec-CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccC-------------CeEEEe-cC--CCceEE
Q 010777 248 TLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-------------PTLDVD-WR--NNVSFA 310 (501)
Q Consensus 248 ~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~-~~--~~~~~~ 310 (501)
.+. .|.++|++++|+++|+||++|+.|+.|+||.+...+....-..... |+..-. -. .....-
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 455 8999999999999999999999999999998765332110000000 000000 00 000000
Q ss_pred EecCCCeEEEEE---cCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 311 TSSTDNMIYVCK---IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 311 ~~~~d~~i~~~~---~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
.+.....+.+-. .-..+|+..|.||.+.|..+.|+- ..+|+++|.|.+||+|++....++..| .|..-|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence 111111111100 013568889999999999999995 568889999999999999999998877 489999999999
Q ss_pred CCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 010777 388 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 467 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~ 467 (501)
|... .++++||-||.||||++...+.+.-.. ...-|++++|+|||++.+.|+.+|.+++|+....++...+
T Consensus 419 PvDD--------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 419 PVDD--------RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ccCC--------CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 9754 489999999999999999877765444 3478999999999999999999999999999988776554
Q ss_pred ec---------CCCEEEEEECCCC-CEEEEEECCCeEEEEEee
Q 010777 468 TG---------NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 500 (501)
Q Consensus 468 ~~---------~~~i~~~~ws~~g-~~la~~~~d~~v~v~~~~ 500 (501)
.- +..|+.++|.|.. +.|.+.+.|..|+|||.+
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR 532 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence 21 2369999999854 578888899999999984
No 124
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.9e-25 Score=191.51 Aligned_cols=276 Identities=17% Similarity=0.263 Sum_probs=200.8
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCcee---E--eecCCCCCEEEEEecCCCCEE-EEEecCCeEEEEeCC
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---C--TLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVK 283 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~---~--~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~i~iwd~~ 283 (501)
+|.+.|++++|++||++|++++.|+.|+||++..-.. . ...-.-+--+.+.|.|+..-+ +++....++++|-+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 4678999999999999999999999999999754111 0 111111234778999998755 455556689999653
Q ss_pred C---cceeE---------eeeeccCCeEEEecCC-CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCE
Q 010777 284 T---EEWKQ---------QFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 350 (501)
Q Consensus 284 ~---~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 350 (501)
. |.... .-..|..++..+...+ ...+++++.|..|.+|+++ ++.+..+......-...+.||+|++
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF 242 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF 242 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence 2 11111 1122344555555544 4566888999999999998 7777776665566667889999999
Q ss_pred EEEEeCCCeEEEEeCC---CC-----ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC---
Q 010777 351 LASCSDDVTAKIWNMK---QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--- 419 (501)
Q Consensus 351 l~s~s~Dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--- 419 (501)
||+++.---|++|..- .+ ..+..+++|...|..++|+++.. .+++.|.||++||||+.-.
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~---------r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST---------RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc---------eeEEEecCCcEEEeeccceEec
Confidence 9999999999999752 22 23567889999999999999875 6899999999999997532
Q ss_pred -e---EEEEe----eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec--CCCEEEEEECCCCCEEEEEE
Q 010777 420 -K---LLYSL----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACF 489 (501)
Q Consensus 420 -~---~~~~~----~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~--~~~i~~~~ws~~g~~la~~~ 489 (501)
+ .+.+. ..-.+.-..++.+|+|+.||.+. ...|++|..++|+....+.. .+.|.+++|+++|+++|+|+
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 1 11111 11112233899999999988654 55799999999988777653 45699999999999999997
Q ss_pred CCCeEEEE
Q 010777 490 ANHTVCVL 497 (501)
Q Consensus 490 ~d~~v~v~ 497 (501)
|..+.|+
T Consensus 393 -dr~vrv~ 399 (420)
T KOG2096|consen 393 -DRYVRVI 399 (420)
T ss_pred -ceeeeee
Confidence 4456665
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=8.1e-24 Score=201.51 Aligned_cols=264 Identities=14% Similarity=0.179 Sum_probs=198.4
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEE-EEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 225 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
..+++++.|+.+++|+... .....+..+.. +.+++|+|++..+ ++++.++.|++||+.+++....+..+..+ ..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEE
Confidence 5788999999999999854 45556665544 5789999999876 56778999999999988877666544333 3455
Q ss_pred cCCC--ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeecccCCC
Q 010777 303 WRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSK 379 (501)
Q Consensus 303 ~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~~~~~ 379 (501)
|.++ ..++++..++.+++|++.....+..+.. ...+.+++|+|++.++++++.++ .+.+||..++..+..+.. ..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 5433 3445667789999999988777666653 23468899999999999988875 467789887766554332 23
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC-----C--CeEEEEECCCCCEEEE-EeCCC
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----E--PVYSLAFSPTGEYLAS-GSLDK 451 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~--~v~~l~~spdg~~las-gs~Dg 451 (501)
....+.|+|++. .+++++..++.|++||+.+++.+..+..+. . ....++|+|++++++. .+.++
T Consensus 158 ~~~~~~~s~dg~--------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 158 RPRFAEFTADGK--------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred CccEEEECCCCC--------EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 456788999875 344566679999999999988776654321 1 2346899999998644 45577
Q ss_pred cEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEE-ECCCeEEEEEee
Q 010777 452 SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 500 (501)
Q Consensus 452 ~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~-~~d~~v~v~~~~ 500 (501)
.|.+||+.+++++..+.....+.+++|+|+|++|+++ ..++.|.|||++
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred eEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 8999999999887766555678999999999999876 468999999975
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.8e-25 Score=216.97 Aligned_cols=241 Identities=22% Similarity=0.367 Sum_probs=205.1
Q ss_pred cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCc-ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcc
Q 010777 250 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 328 (501)
Q Consensus 250 ~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 328 (501)
..|+..-+.|+|.|+|..|++|+.||.|++|+.... +--.++..+...+.++....+ .|++++.+++|.++.+..+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEeeccceEEEeeCCCCCc
Confidence 368888999999999999999999999999986554 333333335556666654433 899999999999999988766
Q ss_pred eeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC
Q 010777 329 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 408 (501)
Q Consensus 329 ~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d 408 (501)
-..+...+-++++++++-+|+++|.||.|-.|++-++........+++|..+|.++.|+|.+. +||+.+.|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~---------fLAvss~d 159 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN---------FLAVSSCD 159 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC---------EEEEEecC
Confidence 555555667899999999999999999999999999999988999999999999999999986 89999999
Q ss_pred CeEEEEeCCCCeEEEEeeCC--------CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC---CCEEEEE
Q 010777 409 STVKLWDVELGKLLYSLNGH--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVC 477 (501)
Q Consensus 409 g~i~iwd~~~~~~~~~~~~h--------~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~---~~i~~~~ 477 (501)
|.|++|++.++.+..++.+- ...++.++|+|+|..|+..+.|+.|++|+..++.....+..+ ..+..++
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999999998887766542 345778999999888888889999999999999887777542 3488999
Q ss_pred ECCCCCEEEEEECCCeEEEEEee
Q 010777 478 WNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 478 ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
|+|.|++||+++.||.|.|||+.
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999999999986
No 127
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=205.46 Aligned_cols=242 Identities=17% Similarity=0.341 Sum_probs=205.7
Q ss_pred eeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEc
Q 010777 245 LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 323 (501)
Q Consensus 245 ~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 323 (501)
.+..+.+|...|.+++=+|.. ..++||+.||.|+|||+....+..++..|.+.|..+.+.. ..++++++|++|..|.+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence 345678999999999999987 6799999999999999999999999999999999988877 78899999999999998
Q ss_pred CCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEE
Q 010777 324 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 403 (501)
Q Consensus 324 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~ 403 (501)
... ++.++.+ .+.+..+.-+..+..++|||.+ |.|||.....++..+.-....+.++.|+|... .+|+
T Consensus 137 ~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------sILa 204 (433)
T KOG0268|consen 137 DGP-PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------SILA 204 (433)
T ss_pred cCC-cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc--------hhee
Confidence 763 6666654 3456677777778889999874 99999999999998888888899999999765 3899
Q ss_pred EEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEecCC-CEEEEEECCC
Q 010777 404 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTGNG-GIFEVCWNKE 481 (501)
Q Consensus 404 sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~-~~~~~~~~~-~i~~~~ws~~ 481 (501)
+|..|+.|.|||++.+.++..+.- ...-+.|+|+|.+-.+++|+.|..++.||.+.-. .+..+.++. .|++++|||.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred eeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence 999999999999999988776542 2334789999988888999999999999998643 355665554 5999999999
Q ss_pred CCEEEEEECCCeEEEEEee
Q 010777 482 GDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 482 g~~la~~~~d~~v~v~~~~ 500 (501)
|+.+++|+-|.+|++|.++
T Consensus 284 G~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred cchhccccccceEEEeecC
Confidence 9999999999999999864
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.2e-25 Score=190.56 Aligned_cols=236 Identities=21% Similarity=0.382 Sum_probs=183.6
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCc--e-eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc
Q 010777 211 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD--L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 211 ~~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~--~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~ 286 (501)
....|.+|+||| ...+++.|+.||+||+|+++.. . ......|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 456799999999 5667779999999999998642 2 12455799999999999999999999999999999998874
Q ss_pred eeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC--EEEEEeCCCeEEEEe
Q 010777 287 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWN 364 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~s~Dg~i~iwd 364 (501)
. ..+..|.++|.++.|-+... .|+|||.|.+|++||
T Consensus 106 ~------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 106 V------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred e------------------------------------------eeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 2 23445888888888877655 799999999999999
Q ss_pred CCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe--eCCCCCeEEEEECCCCC
Q 010777 365 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREPVYSLAFSPTGE 442 (501)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~spdg~ 442 (501)
++...++.++.. ...+++...-. .+++.+..+..|.+|+++++...+.. ....-.+.||+..+|..
T Consensus 144 ~R~~~pv~t~~L-PeRvYa~Dv~~-----------pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 144 TRSSNPVATLQL-PERVYAADVLY-----------PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD 211 (347)
T ss_pred cCCCCeeeeeec-cceeeehhccC-----------ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC
Confidence 998888877653 34566543211 26777888999999999876433221 11233578999999988
Q ss_pred EEEEEeCCCcEEEEeCCCC--eeEEEEecCC----------CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 443 YLASGSLDKSMHIWSLKEG--KIVKTYTGNG----------GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~~~--~~~~~~~~~~----------~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
..|.||-.|++-|..+..+ +.-.+|..+. .|++++|+|.-..||+++.||+..+||-+
T Consensus 212 ~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 212 GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 8899999999999999876 3223333221 36789999999999999999999999853
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-23 Score=204.33 Aligned_cols=324 Identities=18% Similarity=0.313 Sum_probs=242.2
Q ss_pred ccCCccceeEEEECCC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 149 LEGHTSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 149 l~~H~~~V~~~~~sp~--~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
++.-.+.|+++ +||. -+.++.|+.+|.++||++.+++. +..+.+ ....|+++.=+|--..
T Consensus 155 ~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-------------v~~f~~----~~s~IT~ieqsPaLDV 216 (910)
T KOG1539|consen 155 LKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-------------VYTFQE----FFSRITAIEQSPALDV 216 (910)
T ss_pred eeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-------------EEEecc----cccceeEeccCCcceE
Confidence 33333348887 5676 36788999999999999988752 122222 2356999998998889
Q ss_pred EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEE-EEEecCCeEEEEeCCCcceeEeee-eccCCeEEEec
Q 010777 227 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW 303 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 303 (501)
++.|..+|+|.|+++.. +...+|..-.+.|++++|..||+.+ ++|+..|.+.+||+.....+.... .|.+.+....|
T Consensus 217 VaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 217 VAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 99999999999999874 4556666446999999999999765 566677999999999888777665 67677766666
Q ss_pred CC-CceEEEecCCCeEEEEEcC--CC--cceeeecCCCCceeEEEEc-CCCCEEEEEeCCCeEEEEeCCCCce-------
Q 010777 304 RN-NVSFATSSTDNMIYVCKIG--EN--RPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKY------- 370 (501)
Q Consensus 304 ~~-~~~~~~~~~d~~i~~~~~~--~~--~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~i~iwd~~~~~~------- 370 (501)
.+ ...+++++.|+.+++|-.. .+ +.++.-.||..+..|+.|. .+|.++.+++.|++++.+++.....
T Consensus 297 l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 297 LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 54 4556788889988777544 33 3445556999999999997 6788899999999988886532100
Q ss_pred --------e-------------eec--------------ccCC-----------------------------CCEEEEEE
Q 010777 371 --------V-------------HDL--------------REHS-----------------------------KEIYTIRW 386 (501)
Q Consensus 371 --------~-------------~~~--------------~~~~-----------------------------~~v~~i~~ 386 (501)
+ ..| ..|. ..+++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 0 000 0011 12233333
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe---eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
++.|. +.+.|+..|.|-+|++++|-...++ ..|..+|+.++...-++.+++++.+|.+++|+..+..+
T Consensus 457 s~CGN---------F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 457 SFCGN---------FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred eccCc---------eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 33332 5677888999999999999988888 58999999999999999999999999999999887653
Q ss_pred EEEE-----------------------------------------ecC-CCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 464 VKTY-----------------------------------------TGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 464 ~~~~-----------------------------------------~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
+..+ .++ ..|++++|||||++|++++.|++|++||+
T Consensus 528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 2221 112 24789999999999999999999999997
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=216.99 Aligned_cols=237 Identities=24% Similarity=0.418 Sum_probs=189.3
Q ss_pred EEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeee--cc-----CCeEEEecC--CCceEEEecCCCeEEEEEcCC-
Q 010777 256 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-----GPTLDVDWR--NNVSFATSSTDNMIYVCKIGE- 325 (501)
Q Consensus 256 V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~-----~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~- 325 (501)
..+|..+++-..++.++. ..+++|-+........... .. ....++.|. ....+++++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 345556677777777664 4677776554322211111 11 112345564 345789999999999999987
Q ss_pred --CcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEE
Q 010777 326 --NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 402 (501)
Q Consensus 326 --~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l 402 (501)
++.+..|..|...+++++|++.. .+|++||.||+|++||++..+...+++.....|..|+|+|... ..+
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~--------~~F 192 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG--------NKF 192 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC--------ceE
Confidence 66778899999999999999976 5689999999999999999999999999889999999999753 478
Q ss_pred EEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEecCCCEEEEEEC
Q 010777 403 ASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWN 479 (501)
Q Consensus 403 ~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~--~~~~~~~~~~i~~~~ws 479 (501)
+++...|.+++||++.. ++...+.+|.++|.++.|+|++.||||||.|+.|+||+..+.+ .+.++.....+..|.|.
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 99999999999999864 4567789999999999999999999999999999999998654 35566666779999999
Q ss_pred CCC-CEEEEEEC--CCeEEEEEeeC
Q 010777 480 KEG-DKIAACFA--NHTVCVLDFRM 501 (501)
Q Consensus 480 ~~g-~~la~~~~--d~~v~v~~~~~ 501 (501)
|+- .+||+|+. |..|+|||+|+
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred cCccchhhhhhccccceEEEEeecc
Confidence 987 48888754 77899999985
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.2e-24 Score=186.20 Aligned_cols=273 Identities=21% Similarity=0.351 Sum_probs=210.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeee
Q 010777 215 VTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 293 (501)
Q Consensus 215 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 293 (501)
-.|+.|++-|.+||+|..||.|.|||.... ....+.+|..||++++|+++|+.|+|+|.|..|++||+..+.+...+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 689999999999999999999999998653 4456889999999999999999999999999999999999998888776
Q ss_pred ccCCeEEEecCC--CceEEEecCCCeEEEEEcCCCcceeeec----CC-CCceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 294 HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA----GH-QGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 294 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~----~h-~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
. .|+....|++ ...++++-.+..-.+.++..++.. .+. +. .....+..|.+.|+++++|...|.+.+++..
T Consensus 106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred c-CccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 4 4666666643 344555544444455555442211 111 11 1122345688999999999999999999999
Q ss_pred CCceeeecccCC-CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-------eE--EEEeeC--CCCCeEE
Q 010777 367 QDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------KL--LYSLNG--HREPVYS 434 (501)
Q Consensus 367 ~~~~~~~~~~~~-~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-------~~--~~~~~~--h~~~v~~ 434 (501)
+.+++..++... ..|..|.++..|. .|+.-+.|..||.|+++.- .+ .+.+.. .+..-.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~---------~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGR---------FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCc---------EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999998888766 7888899988886 7888899999999987621 11 011110 1223467
Q ss_pred EEECCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEecCC--CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 435 LAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 435 l~~spdg~~lasgs~-Dg~i~iw~~~~~~~~~~~~~~~--~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
++||.+|.|+++|+. -..++||....|.+++.+.+.. ...++.|+|---.+++- ..|.|++|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 899999999988774 4579999999999999998754 37899999998777776 7889999975
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.9e-24 Score=197.15 Aligned_cols=248 Identities=17% Similarity=0.292 Sum_probs=206.9
Q ss_pred CEEEEEeCC-CeEEEEECCCceeE-eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 225 TLLATGSYD-GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 225 ~~l~sg~~d-g~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
.|++++... ..+.+|....+... ....-.++|.+|+-+|.|.+|+.|.-.|.|++|.+.+|.+...+..|-.++.++.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 566666543 57889987643221 2233568899999999999999998999999999999999999999999999999
Q ss_pred cC-CCceEEEecCCCeEEEEEcC---------CCcceeeecCCCCceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCCce
Q 010777 303 WR-NNVSFATSSTDNMIYVCKIG---------ENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKY 370 (501)
Q Consensus 303 ~~-~~~~~~~~~~d~~i~~~~~~---------~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~i~iwd~~~~~~ 370 (501)
|. ++..|++++.||.|++|.+. ..+|+..|..|.-+|+.+...+- ...|+|+|.|.++++||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 96 55788999999999999863 35688899999999999988764 46799999999999999999988
Q ss_pred eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------------eEEEEeeCCCC--Ce
Q 010777 371 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----------------KLLYSLNGHRE--PV 432 (501)
Q Consensus 371 ~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----------------~~~~~~~~h~~--~v 432 (501)
+.++. .+..+.+++.+|.+. .+..|+.+|.|.+.++... ..+..+.||.. +|
T Consensus 211 Llti~-fp~si~av~lDpae~---------~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 211 LLTIT-FPSSIKAVALDPAER---------VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred eEEEe-cCCcceeEEEccccc---------EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 87764 456789999999875 6788999999999876432 23456788988 99
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-cCCCEEEEEECCCC
Q 010777 433 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEG 482 (501)
Q Consensus 433 ~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~-~~~~i~~~~ws~~g 482 (501)
+|++.+-||.+|++|+.||.|+|||+...++++++. ..+.|+.+.+.|--
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 999999999999999999999999999999998887 57788998887753
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2.5e-23 Score=180.31 Aligned_cols=276 Identities=21% Similarity=0.361 Sum_probs=207.0
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCc-----------eeEe-----ecCCCCCEEEEEecCCC-CEEEEEe
Q 010777 211 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD-----------LKCT-----LSKHKGPIFSLKWNKKG-DYLLTGS 272 (501)
Q Consensus 211 ~~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~-----------~~~~-----~~~h~~~V~~l~~~~~~-~~l~s~s 272 (501)
|.+.|.++...+ .|+|+++|+.||.|.+||++.. .++. -.+|+-.|.++.|-|-. ..|.++|
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 446677787776 6899999999999999997531 1121 23588899999999854 5677888
Q ss_pred cCCeEEEEeCCCcceeEeeeeccCCeEEEecC----CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC
Q 010777 273 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR----NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 348 (501)
Q Consensus 273 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 348 (501)
-|.++++||..+-+..-.|... +.+..-.+. ....++++..+-.|++||+..+..-.++.||.+.|.++.|+|..
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 9999999999887665555432 222222222 24567788888999999999999999999999999999999998
Q ss_pred CE-EEEEeCCCeEEEEeCCCC-ceeee--------------cccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEE
Q 010777 349 SL-LASCSDDVTAKIWNMKQD-KYVHD--------------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 412 (501)
Q Consensus 349 ~~-l~s~s~Dg~i~iwd~~~~-~~~~~--------------~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 412 (501)
.+ |+||+.||.||+||++.- .+... -..|.+.+..++|..++. ++++++.|..++
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---------~l~~~gtd~r~r 271 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---------YLASCGTDDRIR 271 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---------hhhhccCccceE
Confidence 76 689999999999998753 22222 235677899999999986 789999999999
Q ss_pred EEeCCCCeEEEEe---eCCCC----CeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCE
Q 010777 413 LWDVELGKLLYSL---NGHRE----PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDK 484 (501)
Q Consensus 413 iwd~~~~~~~~~~---~~h~~----~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~ 484 (501)
+|+..+|+....- ..|.. .+. +. +-+...++---.++.+.++++-.|..+..+..+. .+.+.++.|+-..
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred EeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 9999887643211 01111 111 22 3344445555566889999999998888887764 3888889999999
Q ss_pred EEEEECCCeEEEEE
Q 010777 485 IAACFANHTVCVLD 498 (501)
Q Consensus 485 la~~~~d~~v~v~~ 498 (501)
+.++..|+.+..|-
T Consensus 350 ~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWS 363 (397)
T ss_pred hhccccCCcccccc
Confidence 99999999988773
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=9.2e-26 Score=216.91 Aligned_cols=238 Identities=25% Similarity=0.490 Sum_probs=206.5
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
..+..|...|.|+..-..++.+++|+.|..+-+|.+...-. .. .+.+|..+|.++.|+++..+
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~----------i~-------S~~~hespIeSl~f~~~E~L 84 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA----------IT-------SLTGHESPIESLTFDTSERL 84 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch----------hh-------eeeccCCcceeeecCcchhh
Confidence 34556889999998866789999999999999998753211 11 13456789999999999999
Q ss_pred EEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 227 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
|+.|+.+|+|++||++ .....++.+|...+.+|.|+|-+.|+++|+.|+-+++||.+...
T Consensus 85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G------------------- 145 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG------------------- 145 (825)
T ss_pred hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-------------------
Confidence 9999999999999986 45567899999999999999999999999999999999987443
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEE
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 385 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 385 (501)
+...+.+|...+.++.|+|+|+++++|++|.+++|||+..++...+|..|.+.+..+.
T Consensus 146 ----------------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle 203 (825)
T KOG0267|consen 146 ----------------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE 203 (825)
T ss_pred ----------------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc
Confidence 3445677888999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 386 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 451 (501)
Q Consensus 386 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg 451 (501)
|+|... ++++||.|++|++||+++-..+-..+.....|.+++|+|++..+++|-...
T Consensus 204 ~hp~e~---------Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 204 FHPLEV---------LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cCchhh---------hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 988764 899999999999999999888888887888999999999999888876543
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-22 Score=191.43 Aligned_cols=224 Identities=18% Similarity=0.269 Sum_probs=174.4
Q ss_pred EEccCC-ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 147 TILEGH-TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 147 ~~l~~H-~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
.++.|| ...|.+++|+ ++..|+|.+.+|+|.-||+.+++.. + ........|++++.+|.+.
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~-------------~----~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK-------------Y----NIDSNGGAIWSIAINPENT 123 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee-------------E----EecCCCcceeEEEeCCccc
Confidence 345555 4679999999 6667889999999999999875421 1 1122357899999999999
Q ss_pred EEEEEeCCCeEEEEECCCcee---EeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeee-----cc-C
Q 010777 226 LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-----HS-G 296 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-----~~-~ 296 (501)
.++.|+.||.+..++...+.. ..+...++.|.+|+|+|++..+++|+.||.|++||+..+........ .. .
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~ 203 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE 203 (691)
T ss_pred eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence 999999999888887765433 34666789999999999999999999999999999988775552221 11 1
Q ss_pred --CeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--e-
Q 010777 297 --PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--V- 371 (501)
Q Consensus 297 --~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~--~- 371 (501)
-+.++.+.....++++..-|+|.+||...+..++.+..|.+.|.|++..+++..|++++.|+.|..|...+.+. +
T Consensus 204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 23455566777889999999999999999999999999999999999999999999999999999888765532 1
Q ss_pred -eecccCCCCEEEEEEcC
Q 010777 372 -HDLREHSKEIYTIRWSP 388 (501)
Q Consensus 372 -~~~~~~~~~v~~i~~~p 388 (501)
.....|...+.+++..+
T Consensus 284 ~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred eccccCCcccceeeeeec
Confidence 12234555566655544
No 136
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=6.1e-24 Score=201.38 Aligned_cols=152 Identities=28% Similarity=0.542 Sum_probs=122.2
Q ss_pred eeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc-------eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe
Q 010777 339 VNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 410 (501)
Q Consensus 339 v~~v~~~~-~~~~l~s~s~Dg~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~ 410 (501)
|+.+.|.| |...||.+++||.|++|.+..+. +...+..|...|++++|+|-... +|++++.|-+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad--------vLa~asyd~T 701 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD--------VLAVASYDST 701 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh--------Hhhhhhccce
Confidence 55677877 45679999999999999986542 34567789999999999997642 7899999999
Q ss_pred EEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC----CEEEEEECCCCCEEE
Q 010777 411 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIA 486 (501)
Q Consensus 411 i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~----~i~~~~ws~~g~~la 486 (501)
|+|||+++++....+.+|.+.|..++|||+|+.+|+.+.||+|++|+.+.+.. ..+.+++ .--.+.|-=||.+++
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEE
Confidence 99999999999999999999999999999999999999999999999887643 1223332 234677888998777
Q ss_pred EEECCC----eEEEEEe
Q 010777 487 ACFANH----TVCVLDF 499 (501)
Q Consensus 487 ~~~~d~----~v~v~~~ 499 (501)
..+.|+ .|.+||.
T Consensus 781 v~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDA 797 (1012)
T ss_pred Eecccccchhhhhhhhh
Confidence 665554 3556654
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-22 Score=194.43 Aligned_cols=278 Identities=21% Similarity=0.368 Sum_probs=216.5
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
..+|.|+|||.+.+.||.+-.||.|-||++..+ .+....+.+ +....|-.++|+ ++..|+|.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~------------w~~~~vi~g---~~drsIE~L~W~-e~~RLFS~g~ 88 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN------------WFLEPVIHG---PEDRSIESLAWA-EGGRLFSSGL 88 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC------------ceeeEEEec---CCCCceeeEEEc-cCCeEEeecC
Confidence 467999999999999999999999999998653 122222222 446789999999 5566788899
Q ss_pred CCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE
Q 010777 233 DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 233 dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
+|.|.-||+. ...+..+....++|++++.+|.+..++.|+.||.+...+...+.....
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~--------------------- 147 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK--------------------- 147 (691)
T ss_pred CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE---------------------
Confidence 9999999975 456667777889999999999999999999999777766554432110
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec-----cc---CCCCEEE
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-----RE---HSKEIYT 383 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-----~~---~~~~v~~ 383 (501)
..|.-..+.|.+++|+|++..|++|+.||.|++||..++..++.. +. ...-|++
T Consensus 148 ------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 148 ------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred ------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 112223578999999999999999999999999999988766521 11 2233566
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
+.|-.++ .|++|..-|+|++||...+.++..+..|...|.+++.++++.+++++|.|+.|.-|...+.+.
T Consensus 210 v~~Lrd~----------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 210 VLFLRDS----------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEeecC----------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 6666555 589999999999999999999999999999999999999999999999999999998876643
Q ss_pred EEE----EecC-CCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 464 VKT----YTGN-GGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 464 ~~~----~~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
-.. ...+ ..+-+++..++ .|.+|+.|..|.+-
T Consensus 280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 111 1122 34677777666 88888888887664
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.1e-22 Score=186.40 Aligned_cols=315 Identities=19% Similarity=0.303 Sum_probs=237.3
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
++-|.|++|.++|.. +||..+|.|.||+..+.. ..++.. .|.+.|.+++.-.+|.+|- |+.
T Consensus 246 kk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~-------------~~k~~~----aH~ggv~~L~~lr~GtllS-GgK 306 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDV-ITGDSGGNILIWSKGTNR-------------ISKQVH----AHDGGVFSLCMLRDGTLLS-GGK 306 (626)
T ss_pred ceEEEEEEEcCCCCE-EeecCCceEEEEeCCCce-------------EEeEee----ecCCceEEEEEecCccEee-cCc
Confidence 367999999999875 689999999999964321 111111 4678899999999997665 999
Q ss_pred CCeEEEEECCC-------------c----------------------------eeEeecCCCCCEEEEEecCCCCEEEEE
Q 010777 233 DGQARIWSTNG-------------D----------------------------LKCTLSKHKGPIFSLKWNKKGDYLLTG 271 (501)
Q Consensus 233 dg~i~iw~~~~-------------~----------------------------~~~~~~~h~~~V~~l~~~~~~~~l~s~ 271 (501)
|+.|..||-+- . ......+|....++++.+|+.++|+++
T Consensus 307 DRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~ 386 (626)
T KOG2106|consen 307 DRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTC 386 (626)
T ss_pred cceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeec
Confidence 99999997210 0 011234688899999999999999999
Q ss_pred ecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEE
Q 010777 272 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 351 (501)
Q Consensus 272 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 351 (501)
+.|+.+++|+-..-.|...+ ..+..+++|++...++.+...|..++.+..+...+..-.. ..++++++|+|+|.+|
T Consensus 387 gqdk~v~lW~~~k~~wt~~~---~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 387 GQDKHVRLWNDHKLEWTKII---EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFL 462 (626)
T ss_pred cCcceEEEccCCceeEEEEe---cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEE
Confidence 99999999993333333333 3567788888777889999999999999988555444333 7899999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcee--eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe----
Q 010777 352 ASCSDDVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---- 425 (501)
Q Consensus 352 ~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---- 425 (501)
|.|+.|+.|.||.+...... ..-+-+..+|+.+.|++++. +|.+-|.|-.|-+|.....+.+...
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~---------~~~~~S~d~eiLyW~~~~~~~~ts~kDvk 533 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ---------FLVSNSGDYEILYWKPSECKQITSVKDVK 533 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc---------eEEeccCceEEEEEccccCcccceeccee
Confidence 99999999999987654332 21122448899999999986 8899999999999953322111111
Q ss_pred --------------eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee---EEEEecCC-CEEEEEECCCCCEEEE
Q 010777 426 --------------NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI---VKTYTGNG-GIFEVCWNKEGDKIAA 487 (501)
Q Consensus 426 --------------~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~---~~~~~~~~-~i~~~~ws~~g~~la~ 487 (501)
..|...|+.++-+.+.++||+|...|+|++|...=-+. ...+.+++ -|.+++|.-+..+|.+
T Consensus 534 W~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~ 613 (626)
T KOG2106|consen 534 WATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIS 613 (626)
T ss_pred eeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEe
Confidence 13455677788888889999999999999998653222 23344444 4899999998888887
Q ss_pred EECCCeEEEEEe
Q 010777 488 CFANHTVCVLDF 499 (501)
Q Consensus 488 ~~~d~~v~v~~~ 499 (501)
...|.+|..|++
T Consensus 614 tg~D~Si~qW~l 625 (626)
T KOG2106|consen 614 TGKDTSIMQWRL 625 (626)
T ss_pred cCCCceEEEEEe
Confidence 779999999986
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=190.06 Aligned_cols=263 Identities=20% Similarity=0.340 Sum_probs=204.1
Q ss_pred EEeCC-CeEEEEECCCc-eeEeecCC-CCCEEEEEecCCCCEEEEEec-CCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 229 TGSYD-GQARIWSTNGD-LKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 229 sg~~d-g~i~iw~~~~~-~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
+++.| .++.+||+... ...++.+- ...-.++..- .+.|++++.. -..+.+|.+.......++..-.+++.++.-.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 45889997643 23334332 1111111111 2356666654 4578899887665555555667888998888
Q ss_pred CCceEEEec-CCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC---------CCceeeec
Q 010777 305 NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------QDKYVHDL 374 (501)
Q Consensus 305 ~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~---------~~~~~~~~ 374 (501)
+...|+.++ -.+.||+|.+.++..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|.+. +-++++.+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 877777666 89999999999999999999999999999999999999999999999999753 34567888
Q ss_pred ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010777 375 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 375 ~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
..|.-+|+.+...+.|.. ..|+|+|.|.++++||+..+.++.++. ...+|.+++.+|-++.+..|+.+|.|.
T Consensus 171 ~~HtlsITDl~ig~Gg~~-------~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTN-------ARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred ccCcceeEEEEecCCCcc-------ceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 899999999988776532 378999999999999999999988876 457899999999999999999999999
Q ss_pred EEeCCCCe----------------eEEEEecC---CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 455 IWSLKEGK----------------IVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 455 iw~~~~~~----------------~~~~~~~~---~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+.++.+.. .+..+.++ ..|++++.+.||+.|++|+.||.|+|||+.
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 98875322 22333332 269999999999999999999999999975
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.9e-23 Score=179.17 Aligned_cols=243 Identities=23% Similarity=0.400 Sum_probs=188.5
Q ss_pred ecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC--c--ceeEeeeeccCCeEEEecCC---CceEEEecCCCeEEEE
Q 010777 249 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--E--EWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVC 321 (501)
Q Consensus 249 ~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~ 321 (501)
-.+|.+-|.++.|.+.|+++++|+.|++++|||.+. + .+...+..|.+.+..+.|.. ...+++++.|+++.+|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357889999999999999999999999999999643 2 35567889999999999953 4578899999999999
Q ss_pred EcCCC---------cceeeecCCCCceeEEEEcCC--CCEEEEEeCCCeEEEEeCC------CCceeeecc-------cC
Q 010777 322 KIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMK------QDKYVHDLR-------EH 377 (501)
Q Consensus 322 ~~~~~---------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~i~iwd~~------~~~~~~~~~-------~~ 377 (501)
.-... ....++....+.|+.|.|.|. |-.+|+++.||.+|||+.- ...+.+++. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 76311 223455566788999999985 5679999999999999753 333444444 45
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC-----CeEEEEeCCCC----eEEEEeeCCCCCeEEEEECCCC----CEE
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELG----KLLYSLNGHREPVYSLAFSPTG----EYL 444 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spdg----~~l 444 (501)
..+..|+.|+|.-. +..+||.|+.+ +.++||....+ ..+.++.+|..+|++|+|.|+- .+|
T Consensus 169 ~~~~~CvsWn~sr~------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRM------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred cCcceEEeeccccc------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 67789999986432 23377888765 47889875432 3456788999999999999973 578
Q ss_pred EEEeCCCcEEEEeCCCC--------------------eeEEEEec-CCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 445 ASGSLDKSMHIWSLKEG--------------------KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 445 asgs~Dg~i~iw~~~~~--------------------~~~~~~~~-~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
|+++.|| |+||+++.. +++..+.. ++.|+.+.|+-.|..|++.+.||+|++|-
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 9999999 999998731 12333433 45799999999999999999999999983
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=6.8e-24 Score=195.76 Aligned_cols=268 Identities=19% Similarity=0.311 Sum_probs=206.8
Q ss_pred EEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCce--e
Q 010777 170 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNGDL--K 246 (501)
Q Consensus 170 sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~~--~ 246 (501)
.+|.-..++|||+....... .+..+.. ...+.+++|+... ..+++.+.|..+++|...++. +
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~-------------~~~~~t~--~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~V 71 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKS-------------EYVHQTA--EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEV 71 (673)
T ss_pred eeccCCceEEeecccccCcc-------------ccccCCC--CCcceeeeccccceEEEeecCCceeEEEecccCCCCcc
Confidence 34444579999987543211 0111111 2238999999876 344555678899999877651 1
Q ss_pred Eeec-CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCC
Q 010777 247 CTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 325 (501)
Q Consensus 247 ~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 325 (501)
..+. .....-+|++......|+++|+..++|+|||++...+
T Consensus 72 p~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-------------------------------------- 113 (673)
T KOG4378|consen 72 PRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI-------------------------------------- 113 (673)
T ss_pred ceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH--------------------------------------
Confidence 1111 1122345666666668999999999999999974322
Q ss_pred CcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccC-CCCEEEEEEcCCCCCCCCCCCcEEEEE
Q 010777 326 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILAS 404 (501)
Q Consensus 326 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~p~g~~~~~~~~~~~l~s 404 (501)
++.+.+|...|+++.++-...+||+++..|-|.|..+.++.....|... ...+.-+.|+|... .+|.+
T Consensus 114 ---hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr--------~lL~~ 182 (673)
T KOG4378|consen 114 ---HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR--------FLLSI 182 (673)
T ss_pred ---hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc--------eeeEe
Confidence 2346789999999999999999999999999999999988777777654 34456788888764 58899
Q ss_pred EeCCCeEEEEeCCCCeEEEE-eeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCC
Q 010777 405 ASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG 482 (501)
Q Consensus 405 gs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg-~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g 482 (501)
++.+|.|.+||+....+++. ...|..|...|+|+|.. .+||+.|.|+.|.+||....+....+....+...++|.++|
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG 262 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCc
Confidence 99999999999987777765 46799999999999975 57789999999999999988888888888889999999999
Q ss_pred CEEEEEECCCeEEEEEeeC
Q 010777 483 DKIAACFANHTVCVLDFRM 501 (501)
Q Consensus 483 ~~la~~~~d~~v~v~~~~~ 501 (501)
.+|++|...|.|..||+|+
T Consensus 263 ~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eEEEeecCCceEEEEeccc
Confidence 9999999999999999986
No 142
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.2e-24 Score=199.93 Aligned_cols=268 Identities=22% Similarity=0.338 Sum_probs=199.6
Q ss_pred CceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 010777 144 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 223 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 223 (501)
+...+++.|.+.|++++|+|....|++|+.||+|++|.++... ......+..+..+++ |.++|.|+++++.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----~s~~~~~epi~tfra----H~gPVl~v~v~~n 355 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----KSAEKDVEPILTFRA----HEGPVLCVVVPSN 355 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----CccccceeeeEEEec----ccCceEEEEecCC
Confidence 3345889999999999999999999999999999999995421 111123334444444 5789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-----------ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeee
Q 010777 224 GTLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 292 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 292 (501)
+..+++|+.||+|+.|++.. .....+.||++.|+.+++|+...+|++|+.||++++|+...... .+|.
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~ 434 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFG 434 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccC
Confidence 99999999999999996431 13346789999999999999999999999999999999866554 2222
Q ss_pred e--ccCCeEEEecCCCc--eEEEecCCCeEEEEEcCCCcceeeecCC-------CCceeEEEEcCCCCEEEEEeCCCeEE
Q 010777 293 F--HSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSDDVTAK 361 (501)
Q Consensus 293 ~--~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~Dg~i~ 361 (501)
. ..+..+.+++.... ..+++..-+.--+.+......++.+... ...++.+.++|.+.+.+++..|+.|+
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 1 12223344443221 1111111111112222222233333211 13477899999999999999999999
Q ss_pred EEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCC
Q 010777 362 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 430 (501)
Q Consensus 362 iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 430 (501)
++|..++.+++.+..|...++++++.|+|. +|++|+.||.+++|.+....++.....|+.
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~---------~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGP---------YLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cccccccccchheeeccceecceeecCCCc---------eEEeecCCceeehhhccchheeeccccccc
Confidence 999999999999999999999999999986 899999999999999988888877777753
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=186.05 Aligned_cols=259 Identities=26% Similarity=0.504 Sum_probs=192.4
Q ss_pred EccCCccceeEEEECCCC--CEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 148 ILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 148 ~l~~H~~~V~~~~~sp~~--~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
...+|.+.|+.++-++-+ .+.|+=+..|.|+||++.... .++ +..+
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-----------------------------~~l--~~~~- 193 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-----------------------------NAL--SEPG- 193 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-----------------------------hhh--cCcc-
Confidence 345689999999888865 466777789999999975321 000 0000
Q ss_pred EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 226 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
+. +-+.....+.++.+|.+.=++|+|+|-- ..|+||..-+.|++|...++.|.-
T Consensus 194 ~~----------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v--------------- 248 (440)
T KOG0302|consen 194 LE----------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV--------------- 248 (440)
T ss_pred cc----------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee---------------
Confidence 00 0112334566788999999999999943 358888888999999887765431
Q ss_pred CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC---ceeeecccCCCC
Q 010777 305 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQD---KYVHDLREHSKE 380 (501)
Q Consensus 305 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~~~~~ 380 (501)
. -..|.+|+..|-.++|||.. ..|||||-||+|+|||++.+ .++. .+.|.+.
T Consensus 249 -------------------d----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sD 304 (440)
T KOG0302|consen 249 -------------------D----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSD 304 (440)
T ss_pred -------------------c----CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCc
Confidence 1 12456799999999999986 57899999999999999987 2333 3789999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC---CeEEEEeeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEE
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---GKLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIW 456 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~spd-g~~lasgs~Dg~i~iw 456 (501)
|..|.|+..-. +||+|+.||+++|||++. ++++..++-|..+|++|.|+|. ...|+++|.|.+|.||
T Consensus 305 VNVISWnr~~~---------lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 305 VNVISWNRREP---------LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eeeEEccCCcc---------eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 99999987653 899999999999999984 5678899999999999999996 4678888999999999
Q ss_pred eCCCCe-------------------eEEEEecCCCEEEEEECCCCC-EEEEEECCCeEEEE
Q 010777 457 SLKEGK-------------------IVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVL 497 (501)
Q Consensus 457 ~~~~~~-------------------~~~~~~~~~~i~~~~ws~~g~-~la~~~~d~~v~v~ 497 (501)
|+.-.. ++....+...+-.+.|++.-. +|++.+.|| ++||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 985211 222222333466799999764 777777777 4443
No 144
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=2.6e-20 Score=185.47 Aligned_cols=327 Identities=34% Similarity=0.635 Sum_probs=254.4
Q ss_pred EccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE-CCCCC-
Q 010777 148 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGT- 225 (501)
Q Consensus 148 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-s~~~~- 225 (501)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+...+.. ....+.... ...+..+.+ ++++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~~~---~~~~~~~~~~~~~~~~ 124 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------LIKSLEGLH---DSSVSKLALSSPDGNS 124 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------eEEEEeccC---CCceeeEEEECCCcce
Confidence 5667999999999999999999999999999999875430 011111110 134666666 78887
Q ss_pred EEEEEeC-CCeEEEEECCC--ceeEeecCCCCCEEEEEecCCCCEEEEEec-CCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 226 LLATGSY-DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 226 ~l~sg~~-dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
+++..+. |+.+++|+... .....+..|...|..++|+|++.++++++. |+.+++|++..+.....+..|...+..+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 5555444 99999999885 666788899999999999999999988886 9999999999888888888889999999
Q ss_pred ecCCCc--eEEEecCCCeEEEEEcCCCccee-eecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeecccC
Q 010777 302 DWRNNV--SFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH 377 (501)
Q Consensus 302 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~ 377 (501)
.|.+.. .+++++.|+.+++|+......+. .+.+|.... ...|+|++.++++++.|+.+++|++..... +..+..|
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 987554 34444899999999888667776 688888775 448999999999999999999999986664 4444567
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee--CCCCCeEEEEECCCCCEEEEE-eCCCcEE
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASG-SLDKSMH 454 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~lasg-s~Dg~i~ 454 (501)
...+.++.|.|.+. .+++++.|+.+++|+........... .|...|..+.|++++..++.+ ..|+.+.
T Consensus 284 ~~~v~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 284 SSSVLSVAFSPDGK---------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred CccEEEEEECCCCC---------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88999999999554 45668888999999999887776665 788889999994343566655 6889999
Q ss_pred EEeCCCCeeEEEEecCCCEEEEEECCCCCEEEE-EECCCeEEEEEee
Q 010777 455 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA-CFANHTVCVLDFR 500 (501)
Q Consensus 455 iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~-~~~d~~v~v~~~~ 500 (501)
+|+...............+..+.|++ ...++. +..++.+.+|+..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 355 LWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred eeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecc
Confidence 99998877333333333388999999 544444 6889999999875
No 145
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=5.4e-22 Score=173.44 Aligned_cols=234 Identities=16% Similarity=0.259 Sum_probs=185.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEee
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 291 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 291 (501)
...|..+.|+|.+..|+.+++||.+++|+.........-.|..|+.+++|.+. ..+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~---- 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE---- 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc----
Confidence 46799999999999999999999999999876544444569999999999974 5789999999999999987641
Q ss_pred eeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 010777 292 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 371 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~ 371 (501)
..+..|...|.|+.+++-...+++||.|++|++||.+....+
T Consensus 88 --------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 88 --------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred --------------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 123458889999999998889999999999999999875555
Q ss_pred eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee--CCCCCeEEEEECCCCCEEEEEeC
Q 010777 372 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL 449 (501)
Q Consensus 372 ~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~lasgs~ 449 (501)
..+.. ...|+++...-+ .|+.|..|..|.+||+++....+... ...-.+.+|++-|++.-.|.+|-
T Consensus 130 ~~~d~-~kkVy~~~v~g~-----------~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 130 GTFDQ-GKKVYCMDVSGN-----------RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred ccccc-CceEEEEeccCC-----------EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence 44433 347777765433 57888999999999999876554322 23346899999999888999999
Q ss_pred CCcEEEEeCCCC----eeEEEEecC----------CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 450 DKSMHIWSLKEG----KIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 450 Dg~i~iw~~~~~----~~~~~~~~~----------~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
||+|.+=.+... +.-..|..| -+|++++|+|--..||+|+.||.|.+||+.
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 999887666544 222233322 157899999999999999999999999974
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.9e-23 Score=186.36 Aligned_cols=229 Identities=24% Similarity=0.364 Sum_probs=173.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCc----ee------------------EeecCCCCCEEEEEecCCC-CEEEEEecCCeEEE
Q 010777 223 EGTLLATGSYDGQARIWSTNGD----LK------------------CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIV 279 (501)
Q Consensus 223 ~~~~l~sg~~dg~i~iw~~~~~----~~------------------~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~i 279 (501)
-|+|+|.|..|..|.|||+.-. .. ..-.+|+.+|..|.|+..- +.|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4689999999999999996410 00 0123688888888888754 57889999999999
Q ss_pred EeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEeCCC
Q 010777 280 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDV 358 (501)
Q Consensus 280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg 358 (501)
||+.++++. .++..|.+.|.++.|+|.. .+|++|+.|+
T Consensus 271 WD~~~g~p~-----------------------------------------~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~ 309 (463)
T KOG0270|consen 271 WDVDTGKPK-----------------------------------------SSITHHGKKVQTLEWHPYEPSVLLSGSYDG 309 (463)
T ss_pred EEcCCCCcc-----------------------------------------eehhhcCCceeEEEecCCCceEEEeccccc
Confidence 998877644 3445577889999999875 6789999999
Q ss_pred eEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEE
Q 010777 359 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAF 437 (501)
Q Consensus 359 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~ 437 (501)
++.+.|.+........-...+.|-.++|.|... ..++++..||+|+-+|+|+. ++++++++|.++|.+|++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~ 381 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV 381 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEecCCCc--------eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe
Confidence 999999984222211112356788899988754 46778899999999999965 899999999999999999
Q ss_pred CCCC-CEEEEEeCCCcEEEEeCCCC--eeEEEEec-CCCEEEEEECCCC-CEEEEEECCCeEEEEEee
Q 010777 438 SPTG-EYLASGSLDKSMHIWSLKEG--KIVKTYTG-NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 500 (501)
Q Consensus 438 spdg-~~lasgs~Dg~i~iw~~~~~--~~~~~~~~-~~~i~~~~ws~~g-~~la~~~~d~~v~v~~~~ 500 (501)
++.- .+|+|+|.|+.|++|++..- +.+..-.- -+...++++.|+- -+||+|+..+.++|||+.
T Consensus 382 n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 382 NIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred cCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 9865 57889999999999998643 23322211 1234566667764 488888888899999963
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=3.9e-22 Score=180.28 Aligned_cols=295 Identities=21% Similarity=0.412 Sum_probs=191.1
Q ss_pred ccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 153 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 153 ~~~V~~~~~sp~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
..+|..+.|.++.. .|||||.|..|+||.+..+...+.. ..+. .......|...|+++.|+|+|.+|+||+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----~~V~----y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----MKVE----YLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----eeEE----EeecccCCcceeEEEEEcCCcCeeeecC
Confidence 35799999999866 9999999999999998765432211 1121 1233445688999999999999999999
Q ss_pred CCCeEEEEECC--------C-----c----eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 232 YDGQARIWSTN--------G-----D----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 232 ~dg~i~iw~~~--------~-----~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
.+|.|.+|... . . ....+.+|...|+.++|+|++.++++++.|.++++||+..+.....+..|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 99999999754 1 1 23456789999999999999999999999999999999988766655554
Q ss_pred cCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec
Q 010777 295 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 374 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 374 (501)
... +..++|.|-++++++-+.|...+.+.+...+.++..
T Consensus 165 ~~y-----------------------------------------vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 165 EHY-----------------------------------------VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred ccc-----------------------------------------cceeecchhhhhhhhhccCcccceeeeeeeeeeeee
Confidence 444 444444444444444444444443333222211110
Q ss_pred c-------------------cCC----CCEEEEEEcCCCCCCCCCCCcEEEEEEe--CCCeEEEEeCC-CCeEEEEeeCC
Q 010777 375 R-------------------EHS----KEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVE-LGKLLYSLNGH 428 (501)
Q Consensus 375 ~-------------------~~~----~~v~~i~~~p~g~~~~~~~~~~~l~sgs--~dg~i~iwd~~-~~~~~~~~~~h 428 (501)
. .|. .-...++|+|+|.....|.+.. -+|. .-++.++|+-. ..++...+.+-
T Consensus 204 ~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~--~~g~~~~~n~tYvfsrk~l~rP~~~lp~~ 281 (434)
T KOG1009|consen 204 GLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF--KVGGGVFRNTSYVFSRKDLKRPAARLPSP 281 (434)
T ss_pred eeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee--eeCCceeeceeEeeccccccCceeecCCC
Confidence 0 011 1124567888886222221100 0000 01223444322 22445556666
Q ss_pred CCCeEEEEECC------------------CCCEEEEEeCCCcEEEEeCCCCeeEEEEe--cCCCEEEEEECCCCCEEEEE
Q 010777 429 REPVYSLAFSP------------------TGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAAC 488 (501)
Q Consensus 429 ~~~v~~l~~sp------------------dg~~lasgs~Dg~i~iw~~~~~~~~~~~~--~~~~i~~~~ws~~g~~la~~ 488 (501)
..++..+.|+| -+-.+|.++. ..|+|||..+-..+.... +-..|++++|++||+.|+..
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vS 360 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVS 360 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEe
Confidence 66667777665 1223455554 479999988765544432 23579999999999999999
Q ss_pred ECCCeEEEEEe
Q 010777 489 FANHTVCVLDF 499 (501)
Q Consensus 489 ~~d~~v~v~~~ 499 (501)
+.||.+.+..|
T Consensus 361 S~DGyCS~vtf 371 (434)
T KOG1009|consen 361 STDGFCSLVTF 371 (434)
T ss_pred ccCCceEEEEE
Confidence 99998877655
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.6e-23 Score=192.21 Aligned_cols=236 Identities=21% Similarity=0.384 Sum_probs=196.4
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 155 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 234 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 234 (501)
-|++|.++|||+.|++||.-.++-|||+...... ++..........+.++.+||.+.++++..||
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTpr---------------ikaeltssapaCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR---------------IKAELTSSAPACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcc---------------hhhhcCCcchhhhhhhcCCccceeeeeccCC
Confidence 3688999999999999999999999999764321 1112222223467789999999999999999
Q ss_pred eEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEec
Q 010777 235 QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS 313 (501)
Q Consensus 235 ~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (501)
.|.|||+..+ .+..|.+|++.+.||..+++|..|-||+-|.+||.||++++...+++.+
T Consensus 532 nI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF-------------------- 591 (705)
T KOG0639|consen 532 NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-------------------- 591 (705)
T ss_pred cEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh--------------------
Confidence 9999998754 5678999999999999999999999999999999999998753332221
Q ss_pred CCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCC
Q 010777 314 TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 393 (501)
Q Consensus 314 ~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~ 393 (501)
.+.|.++.++|++.+|+.|-..+.+.|-... +...+.+..|...|.++.|++.|.
T Consensus 592 ----------------------~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGk-- 646 (705)
T KOG0639|consen 592 ----------------------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGK-- 646 (705)
T ss_pred ----------------------hhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCc--
Confidence 3457788899999999999999998887754 333455677899999999999997
Q ss_pred CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 394 NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 394 ~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
++++.+.|+.+..|...-|..++..+ ...+|.++..|.|.+||+|||.|....||.+
T Consensus 647 -------wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 -------WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -------eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78899999999999999899888887 4578999999999999999999998888865
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.8e-22 Score=183.66 Aligned_cols=279 Identities=19% Similarity=0.306 Sum_probs=205.7
Q ss_pred cCCCCeEEEEECCCC--CEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEe
Q 010777 210 EKSKDVTTLDWNGEG--TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWD 281 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~-----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd 281 (501)
.+...|++++|+|.. +++++|..-|+|-+|+..+ .....+..|..+|.+|.|+|.+ ..+++.|.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 346789999999964 5889999999999999842 2345678899999999999965 6899999999999999
Q ss_pred CCCcceeEeeee--ccCCeEEEecCC-CceEEEecCCCeEEEEEcCCCcc-eeeecCCCCceeEEEEcCCCC-EEEEEeC
Q 010777 282 VKTEEWKQQFEF--HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGS-LLASCSD 356 (501)
Q Consensus 282 ~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~-~l~s~s~ 356 (501)
+++......+.. ...-...+++.. +..++.+..=|...+||.+.+.. ...+.-|...|++|+++|-.. +|||||.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 987653333322 111223344432 33444555555788999887654 445566888999999999875 5899999
Q ss_pred CCeEEEEeCCCCce----eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC----CCeEEEEeeCC
Q 010777 357 DVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKLLYSLNGH 428 (501)
Q Consensus 357 Dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~----~~~~~~~~~~h 428 (501)
|++++|||++.-.. +-....|...|.+..|||.+. -|++-+.|+.|||||.. ...++.++. |
T Consensus 344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---------tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-H 413 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---------TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-H 413 (498)
T ss_pred CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---------ceEeeccCCceEEeecccccccCCccceee-c
Confidence 99999999875322 233456889999999999985 47888999999999973 222333332 2
Q ss_pred C----CC--eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC--CEEE-EEECCCCCEEE-EEECCCeEEEEE
Q 010777 429 R----EP--VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG--GIFE-VCWNKEGDKIA-ACFANHTVCVLD 498 (501)
Q Consensus 429 ~----~~--v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~--~i~~-~~ws~~g~~la-~~~~d~~v~v~~ 498 (501)
. .. ....+|.|+..++++|-.-..|-|||-..++++..+.... .|.+ ..|+|-+..+| .+...|.|+||-
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 1 22 3456899999999999999999999999998877754322 3333 46999998555 456678888884
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=5.5e-22 Score=174.19 Aligned_cols=288 Identities=26% Similarity=0.450 Sum_probs=206.6
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC-------CCCCEEEE
Q 010777 157 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-------GEGTLLAT 229 (501)
Q Consensus 157 ~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-------~~~~~l~s 229 (501)
..+.|||||.-|++-+.|..+++|++........+ .++.... .+..-++ .....|+..+|- |+..++++
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~~--~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNFS--KHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCccccc--cceeEEe-ccCCEEEEEEeeeccccCCCccceeee
Confidence 46889999999999999999999998643221111 1111111 0111111 123457787875 67889999
Q ss_pred EeCCCeEEEEEC-CCceeEeecC--CCC---CEEEEEecCCCCEEEEEecCCeEEEEeC-CCcceeEeeeeccCCeEEEe
Q 010777 230 GSYDGQARIWST-NGDLKCTLSK--HKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 230 g~~dg~i~iw~~-~~~~~~~~~~--h~~---~V~~l~~~~~~~~l~s~s~D~~i~iwd~-~~~~~~~~~~~~~~~~~~~~ 302 (501)
.+.+.-|++||. .++..+.+.+ |.. +..+|+|+|+|.+|++|. .++|+++|+ +.+.-...+..
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t--------- 198 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT--------- 198 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh---------
Confidence 999999999996 4555555543 433 347899999999999876 578999998 44431111100
Q ss_pred cCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeecccCCCCE
Q 010777 303 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 381 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v 381 (501)
..+--.+..+.|.|++|+|... .++.|+.-.++-||....+.++..+.+|.+.|
T Consensus 199 -------------------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 199 -------------------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV 253 (406)
T ss_pred -------------------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence 0000123456789999999654 89999999999999988899999999999999
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-CeEEEEeeCCCC-CeEEEEE--CCCCCEEEEEeCCCcEEEE
Q 010777 382 YTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-GKLLYSLNGHRE-PVYSLAF--SPTGEYLASGSLDKSMHIW 456 (501)
Q Consensus 382 ~~i~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~-~~~~~~~~~h~~-~v~~l~~--spdg~~lasgs~Dg~i~iw 456 (501)
+.++|.++|. -|.+|+ .|..|-.||++. +.+++.+..|.. .-..|-| .|+|++||+|+.||.|++|
T Consensus 254 ThL~~~edGn---------~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 254 THLQWCEDGN---------KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVW 324 (406)
T ss_pred eeEEeccCcC---------eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEE
Confidence 9999999996 455665 578899999985 456777877765 2234544 6889999999999999999
Q ss_pred eCCC-CeeEEEEec-CCCEEEEEECCCCCEEEEEECCC
Q 010777 457 SLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH 492 (501)
Q Consensus 457 ~~~~-~~~~~~~~~-~~~i~~~~ws~~g~~la~~~~d~ 492 (501)
|+++ |..+..+.. ...++.++++|.=-++|+++...
T Consensus 325 dlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 325 DLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 9998 654444433 44588999999977888877653
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=7.3e-22 Score=173.84 Aligned_cols=297 Identities=21% Similarity=0.398 Sum_probs=206.3
Q ss_pred EEccCCccceeEEEECC----C-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 010777 147 TILEGHTSEVCACAWSP----A-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 221 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp----~-~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 221 (501)
++...|+.+|.+++|++ + -..+||+|. +.+.+|....... +.. +.... ...+......++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~--------ir~--lq~y~--D~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG--------IRL--LQSYA--DEDHDESFYTCSWS 98 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc--------eee--eeecc--CCCCCcceEEEEEE
Confidence 45678999999999985 2 235666654 5788888653210 011 11111 11234556777776
Q ss_pred CC----CCEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeecc
Q 010777 222 GE----GTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 295 (501)
Q Consensus 222 ~~----~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 295 (501)
-+ ..+++.||.-|.|+|.|... +....+.+|..+|..++|+|.. +++++||.|.+||+||+++..++..|.+
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG-- 176 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG-- 176 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--
Confidence 53 45889999999999999764 5556788999999999999976 6889999999999999999876654422
Q ss_pred CCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecc
Q 010777 296 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 375 (501)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 375 (501)
+.||.+.|.+++|+++|.+|++|+.|.+|++|++.....-..+.
T Consensus 177 ------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 177 ------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred ------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 45799999999999999999999999999999998543221111
Q ss_pred cCCCCEEEEEEcCCCCCC-------CCCC------Cc----------EEEEEEeCCCeEEEEeCC-CCe-----------
Q 010777 376 EHSKEIYTIRWSPTGSGT-------NNPN------QQ----------LILASASFDSTVKLWDVE-LGK----------- 420 (501)
Q Consensus 376 ~~~~~v~~i~~~p~g~~~-------~~~~------~~----------~~l~sgs~dg~i~iwd~~-~~~----------- 420 (501)
.++.|+|++... .-|. +. .++++-|.++.|..|... -.+
T Consensus 221 ------~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 221 ------LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred ------hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 011222222110 0000 00 157888889999999762 111
Q ss_pred --EEEEeeCCCCCeEEE--EECCCCCEEEEEeCCCcEEEEeCCCCeeE--EEEec---CCCEEEEEECCCCCEEEEEECC
Q 010777 421 --LLYSLNGHREPVYSL--AFSPTGEYLASGSLDKSMHIWSLKEGKIV--KTYTG---NGGIFEVCWNKEGDKIAACFAN 491 (501)
Q Consensus 421 --~~~~~~~h~~~v~~l--~~spdg~~lasgs~Dg~i~iw~~~~~~~~--~~~~~---~~~i~~~~ws~~g~~la~~~~d 491 (501)
.+.+++-....|+-| +|.|-+++||.|...|.|.+||++..... .++.+ ...|...+|+.||..|++...+
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 122333333445555 45666899999999999999999876442 22222 3358889999999999999999
Q ss_pred CeEEEEEee
Q 010777 492 HTVCVLDFR 500 (501)
Q Consensus 492 ~~v~v~~~~ 500 (501)
++|.-||..
T Consensus 375 ~~Vwrwdrv 383 (385)
T KOG1034|consen 375 GTVWRWDRV 383 (385)
T ss_pred CcEEEEEee
Confidence 999999864
No 152
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=181.71 Aligned_cols=219 Identities=25% Similarity=0.440 Sum_probs=168.8
Q ss_pred eecCCCCCEEEEEecCCC--CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCC
Q 010777 248 TLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 325 (501)
Q Consensus 248 ~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 325 (501)
....|.+.+..+.-.+-+ .+.++-+..|.|.|||+...- +.+. . .+.. .....
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~---~------------------~~~~--~~~s~ 200 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALS---E------------------PGLE--VKDSE 200 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhc---C------------------cccc--ccccc
Confidence 345677777777766655 455666778999999985421 0000 0 0000 00135
Q ss_pred CcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcee---eecccCCCCEEEEEEcCCCCCCCCCCCcEE
Q 010777 326 NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYV---HDLREHSKEIYTIRWSPTGSGTNNPNQQLI 401 (501)
Q Consensus 326 ~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~ 401 (501)
.+|+.++.+|.+.=.+++|||-. ..++||.--+.|++|-..++... ..|.+|...|-.++|||... .+
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~--------~v 272 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED--------GV 272 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--------ce
Confidence 67889999999999999999943 23778888889999988776543 34567999999999999865 38
Q ss_pred EEEEeCCCeEEEEeCCCC---eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eeEEEEec-CCCEE
Q 010777 402 LASASFDSTVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---KIVKTYTG-NGGIF 474 (501)
Q Consensus 402 l~sgs~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~---~~~~~~~~-~~~i~ 474 (501)
|+|||.||+|+|||++.+ .++.+ ++|..-|+.|+|+..-.+||+|+.||+++|||++.. +.+.+|.. ...|+
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 999999999999999987 34444 889999999999999889999999999999999864 45677765 56799
Q ss_pred EEEECCC-CCEEEEEECCCeEEEEEee
Q 010777 475 EVCWNKE-GDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 475 ~~~ws~~-g~~la~~~~d~~v~v~~~~ 500 (501)
++.|+|. ...||+++.|..|++||+.
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEee
Confidence 9999995 4688899999999999985
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=169.59 Aligned_cols=289 Identities=16% Similarity=0.302 Sum_probs=203.4
Q ss_pred cCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 010777 141 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 220 (501)
Q Consensus 141 ~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 220 (501)
.|....++|.... -.||.||+-|.+||.|..||.|.|||+.+... ......|..+|++++|
T Consensus 13 ~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~W 73 (405)
T KOG1273|consen 13 YPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCW 73 (405)
T ss_pred ChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEe
Confidence 3444445555222 78999999999999999999999999876431 1223456788999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCC-EEEEEecCCeEEEEeCCCcceeEeeeeccC-C
Q 010777 221 NGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-P 297 (501)
Q Consensus 221 s~~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-~ 297 (501)
|++|++|+|++.|..|.+||+. +.....+ ...++|+...|+|... .++++-.+..-.+-++.... ...+..... .
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~d 151 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGD 151 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccc
Confidence 9999999999999999999975 4444444 3678999999999653 34444444444444443311 111111110 0
Q ss_pred ---e-EEEec-CCCceEEEecCCCeEEEEEcCCCcceeeecCCC-CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC---
Q 010777 298 ---T-LDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--- 368 (501)
Q Consensus 298 ---~-~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~--- 368 (501)
+ ....| +....++++...|.+.+++..+-+.+..++--. ..|..+-++..|.+|+.-+.|..||.|++..-
T Consensus 152 ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 152 LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 0 01113 244577889999999999998888877776544 67888999999999999999999999987521
Q ss_pred ----ce--eeeccc--CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC-CCeEEEEECC
Q 010777 369 ----KY--VHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSP 439 (501)
Q Consensus 369 ----~~--~~~~~~--~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp 439 (501)
.+ .+.++. ...+-.+++|+.+|. ++.|+......++||....|.++..+.|.+ ....++.|+|
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge--------Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE--------YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCcc--------EEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc
Confidence 11 111110 111224567777664 444444566789999999999999998877 5678899999
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 010777 440 TGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 440 dg~~lasgs~Dg~i~iw~~~ 459 (501)
-...|++- ..|.|+||...
T Consensus 304 ~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ceeeeeec-cCCceEEEEee
Confidence 99888887 68899999864
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.4e-21 Score=179.12 Aligned_cols=290 Identities=18% Similarity=0.324 Sum_probs=212.5
Q ss_pred EEccCCccceeEEEECCCC--CEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-C
Q 010777 147 TILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 223 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~--~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~ 223 (501)
...+-|..+|++++|+|.. +++|+|..-|.|-+||+.+...... .+ . ....|+.+|.+|.|+| +
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d------~v---~----~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD------GV---Y----LFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC------ce---E----EeccCCccccceEecCCC
Confidence 3456688999999999974 5888999999999999952211100 00 1 1235688999999999 4
Q ss_pred CCEEEEEeCCCeEEEEECCCceeE---eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcce-eEeeeeccCCeE
Q 010777 224 GTLLATGSYDGQARIWSTNGDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTL 299 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~~~ 299 (501)
...+++.++||+|++-|.++.... .+..-.....++.|+.....++.+..=|...+||+++..- ...+..|...|.
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 578999999999999998764332 2222334566778888887888888777999999988654 455666777787
Q ss_pred EEecC--CCceEEEecCCCeEEEEEcCCCc----ceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC----CCc
Q 010777 300 DVDWR--NNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK----QDK 369 (501)
Q Consensus 300 ~~~~~--~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~----~~~ 369 (501)
.+++. ....+++++.|++.++||++.-. |+.....|...|+++.|||++..|+|.+.|..|||||.. ...
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 77775 45678999999999999987522 444556799999999999999889999999999999973 222
Q ss_pred eeeecccCC------CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCC-CCCeEE-EEECCCC
Q 010777 370 YVHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYS-LAFSPTG 441 (501)
Q Consensus 370 ~~~~~~~~~------~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~-l~~spdg 441 (501)
+...+. |. -......|.|+.. +++.|-.-..|-|+|-..++.+..+..- ...|.+ ..|+|-+
T Consensus 407 p~~~I~-Hn~~t~RwlT~fKA~W~P~~~---------li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 407 PLGTIP-HNNRTGRWLTPFKAAWDPDYN---------LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred ccceee-ccCcccccccchhheeCCCcc---------EEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 222221 21 1233457777654 8889988889999999999988775433 235655 4899998
Q ss_pred CEEEE-EeCCCcEEEEeCC
Q 010777 442 EYLAS-GSLDKSMHIWSLK 459 (501)
Q Consensus 442 ~~las-gs~Dg~i~iw~~~ 459 (501)
..+++ ++.-|.|+||.-+
T Consensus 477 ~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeccCCccceEEEEecC
Confidence 85554 5567888888654
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=186.55 Aligned_cols=276 Identities=19% Similarity=0.321 Sum_probs=207.1
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 155 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 234 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 234 (501)
.|+.++|-|||..|+.+. +..+.+||...|... ..+ .+|...|.|++|+.||+.|+||+.|.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll-------------qtL----KgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL-------------QPL----KGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccc-------------ccc----ccccceEEEEEEccCCceeccCCCce
Confidence 799999999999777665 456889999887532 122 24567899999999999999999999
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecC
Q 010777 235 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST 314 (501)
Q Consensus 235 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (501)
.|.+|+..-+-... ..|++.|.|+.|+|-.+.|+||+-. -.-+|.......
T Consensus 76 ~VI~W~~klEG~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V--------------------------- 126 (1081)
T KOG1538|consen 76 SVIIWTSKLEGILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV--------------------------- 126 (1081)
T ss_pred eEEEecccccceee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH---------------------------
Confidence 99999864322222 3599999999999999999999853 345564432211
Q ss_pred CCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eecccCCCCEEEEEEcCCCCC
Q 010777 315 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSG 392 (501)
Q Consensus 315 d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~p~g~~ 392 (501)
... .....+.+++|..||++++.|-.+|+|.|-+-.....+ ..--+...+|++|+|+|....
T Consensus 127 ---------------~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 127 ---------------SKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ---------------Hhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 000 01346889999999999999999999999864332222 222346789999999997532
Q ss_pred CCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CC
Q 010777 393 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NG 471 (501)
Q Consensus 393 ~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~-~~ 471 (501)
. ..-+++...+..++.++.+. |+.+..-+...-.-.|+.+-|+|.|+..||.|+.+++|. +.|-.+.+... ..
T Consensus 191 G----~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~ 264 (1081)
T KOG1538|consen 191 G----RNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDS 264 (1081)
T ss_pred C----ccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccce
Confidence 1 12368888999999988875 555543333333457899999999999999999999996 45666666543 56
Q ss_pred CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 472 GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 472 ~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.|++++.+|.|+.++.|+.||+|.-||+
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhh
Confidence 7999999999999999999999988875
No 156
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=185.44 Aligned_cols=267 Identities=23% Similarity=0.334 Sum_probs=195.6
Q ss_pred CCEEEEEeCCCeEEEEECCCce-------eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEe--eeec
Q 010777 224 GTLLATGSYDGQARIWSTNGDL-------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FEFH 294 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~~~-------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~--~~~~ 294 (501)
...|+.+..||.|.+++..... ......|.++|+.+.|-|....|++++.|.++++||+.+..+... +..|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 4578999999999999975421 234567999999999999777899999999999999999888776 8889
Q ss_pred cCCeEEEecC--CCceEEEecCCCeEEEEEcCCCc--------------------ce-------eeecCCCCceeE---E
Q 010777 295 SGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENR--------------------PI-------KTFAGHQGEVNC---V 342 (501)
Q Consensus 295 ~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~--------------------~~-------~~~~~h~~~v~~---v 342 (501)
.+.+.++.|. +...|++++.||.|.+||++... +. .....|...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 9988888774 56789999999999999986432 11 111234444544 5
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEeCCCCceeee--------cccC---CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe
Q 010777 343 KWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD--------LREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDST 410 (501)
Q Consensus 343 ~~~~~~~~l~s~s~-Dg~i~iwd~~~~~~~~~--------~~~~---~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~ 410 (501)
.+..|...||+++. |+.|+|||+++...... +..| .-.+.++.....|. +++|+|. |+.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt--------~L~AsCt-D~s 294 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT--------YLFASCT-DNS 294 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC--------eEEEEec-CCc
Confidence 56678899999988 99999999987543221 1112 11234444444343 4556655 999
Q ss_pred EEEEeCCCC--eEEEEeeCCCCCe--EEEEECCCCCEEEEEeCCCcEEEEeCCCCee-EEEEecCC-CEEEEEECCCC-C
Q 010777 411 VKLWDVELG--KLLYSLNGHREPV--YSLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGNG-GIFEVCWNKEG-D 483 (501)
Q Consensus 411 i~iwd~~~~--~~~~~~~~h~~~v--~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~-~~~~~~~~-~i~~~~ws~~g-~ 483 (501)
|++||+..- .++..+.++...- ..-..+|++.+|++|+.|...++|.+.+-.. +..+.++. .|+.++|.|.- .
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 999998753 3455555553221 1224689999999999999999999987654 33344443 48999999964 5
Q ss_pred EEEEEECCCeEEEEEe
Q 010777 484 KIAACFANHTVCVLDF 499 (501)
Q Consensus 484 ~la~~~~d~~v~v~~~ 499 (501)
-+|+|+.|.++.||++
T Consensus 375 ~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRL 390 (720)
T ss_pred CceeeccCcceEEEec
Confidence 7788899999999986
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=5e-19 Score=176.16 Aligned_cols=328 Identities=29% Similarity=0.568 Sum_probs=251.1
Q ss_pred ceEEccCCc-cceeEEEE-CCCCC-EEEEEEC-CCcEEEEecCC-CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEE
Q 010777 145 DVTILEGHT-SEVCACAW-SPAGS-LLASGSG-DSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 219 (501)
Q Consensus 145 ~~~~l~~H~-~~V~~~~~-sp~~~-~l~sgs~-D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 219 (501)
.+..+.++. ..+..+.+ ++++. +++..+. |+.+++|++.. .. .. .....|...|..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------~~----~~~~~~~~~v~~~~ 162 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-------------LI----RTLEGHSESVTSLA 162 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-------------EE----EEEecCcccEEEEE
Confidence 345555544 37777777 88887 5555454 99999999865 11 11 11223567789999
Q ss_pred ECCCCCEEEEEeC-CCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCC-EEEEEecCCeEEEEeCCCcceeE-eeeecc
Q 010777 220 WNGEGTLLATGSY-DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ-QFEFHS 295 (501)
Q Consensus 220 ~s~~~~~l~sg~~-dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~ 295 (501)
|+|++.++++++. ++.+++|+... .....+.+|...|.+++|+|++. .+++++.|++|++||...+.... .+..|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 242 (466)
T COG2319 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242 (466)
T ss_pred ECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC
Confidence 9999999999986 99999999874 56667788999999999999998 55566999999999988777777 566666
Q ss_pred CCeEEEecCCC-ceEEEecCCCeEEEEEcCCCcc-eeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee
Q 010777 296 GPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 373 (501)
Q Consensus 296 ~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 373 (501)
... ...|... ..+++++.++.+++|+...... +..+.+|...+.++.|+|++..+++++.|+.+++|+..+......
T Consensus 243 ~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 243 DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 654 2245443 4677899999999999987665 455568889999999999988888899999999999888776665
Q ss_pred cc--cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEE-EeCC
Q 010777 374 LR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-GSLD 450 (501)
Q Consensus 374 ~~--~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~las-gs~D 450 (501)
.. .|...+..+.| +.. ...++.++..|+.+++|++............ ..+..+.+++ ...++. ++.+
T Consensus 322 ~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 391 (466)
T COG2319 322 LTLKGHEGPVSSLSF-SPD-------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTD 391 (466)
T ss_pred eeecccCCceEEEEE-CCC-------CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCC
Confidence 55 67777889988 422 0124444468899999999877733333322 2288999999 544444 6889
Q ss_pred CcEEEEeCCCCeeEEEEecC-CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 451 KSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 451 g~i~iw~~~~~~~~~~~~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+.+.+|+............. ..+..+.+++++..++.+..++.+.+|++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred CceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 99999999988877776665 679999999999999999999999999864
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.9e-21 Score=182.40 Aligned_cols=280 Identities=21% Similarity=0.329 Sum_probs=211.0
Q ss_pred cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCE-EEEEecCCeEEEEeCCCcc
Q 010777 208 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 208 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~i~iwd~~~~~ 286 (501)
+.+|.+.|.++...|.|.+|++|+.||+||||.+.+..........+.|.+|+|+|.+.. +++++...++.|-+..-|.
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 456789999999999999999999999999999865433322234568999999998753 4444444556665543221
Q ss_pred e-------------------------------------eEeeeeccCCeEEEecCCCc-eEEEec---CCCeEEEEEcCC
Q 010777 287 W-------------------------------------KQQFEFHSGPTLDVDWRNNV-SFATSS---TDNMIYVCKIGE 325 (501)
Q Consensus 287 ~-------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~---~d~~i~~~~~~~ 325 (501)
. +...-.|..++..+.|+... .|++.. ....|.+..+..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0 01122344456677786543 444432 345678888877
Q ss_pred CcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEE
Q 010777 326 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 405 (501)
Q Consensus 326 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sg 405 (501)
.+....|.-..+.|.++.|+|...+|+.++. ..|||||+.....+..+......|.+++.+|.|. -|+.|
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD---------nli~g 625 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD---------NLILG 625 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC---------eEEEe
Confidence 6655566666788999999999999888775 4799999988888887777778899999999886 36679
Q ss_pred eCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC------Ce---eEEEEec-----C
Q 010777 406 SFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE------GK---IVKTYTG-----N 470 (501)
Q Consensus 406 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~------~~---~~~~~~~-----~ 470 (501)
+.|+.+..||+.-+ ++..++.-|...|++|+||+.-.++++|+.||++.||.-.- .- .++.+.+ +
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999999999855 55667888999999999999999999999999999996321 11 1333433 3
Q ss_pred CCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 471 GGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 471 ~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
.+|.++.|+|.--+|.++++||+|++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 468999999999999999999999998
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.8e-22 Score=204.32 Aligned_cols=242 Identities=21% Similarity=0.456 Sum_probs=197.8
Q ss_pred CCeEEEEECCCCCE----EEEEeCCCeEEEEECCC-------ceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEE
Q 010777 213 KDVTTLDWNGEGTL----LATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVW 280 (501)
Q Consensus 213 ~~V~~~~~s~~~~~----l~sg~~dg~i~iw~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iw 280 (501)
.....|+|.+.|.. |+.|..||.|-+|+... ....+...|+++|.+|.|++.. +.|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34678999887765 88899999999999653 1334677899999999999976 499999999999999
Q ss_pred eCCCcceeEeee--eccCCeEEEecCCC--ceEEEecCCCeEEEEEcCCCcceeeecCCCC--ceeEEEEcCCC-CEEEE
Q 010777 281 DVKTEEWKQQFE--FHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTG-SLLAS 353 (501)
Q Consensus 281 d~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~-~~l~s 353 (501)
|+..-+.--.+. .....|.++.|... ..|++++.+|.+.+||++..+++..+..|.+ .+..++|||+. ..|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 998643222221 12345788889654 4678889999999999999999888876655 47789999987 44666
Q ss_pred EeCCC---eEEEEeCCCC-ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC
Q 010777 354 CSDDV---TAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 429 (501)
Q Consensus 354 ~s~Dg---~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~ 429 (501)
++.|. .|.+||++.- .+++.++.|...|.++.|++.+. .+|+|++.|+.|.+|+..+++.+..+....
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~--------~lllSsgkD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP--------RLLLSSGKDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc--------hhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence 66654 5899998753 46677889999999999999874 378999999999999999999999999888
Q ss_pred CCeEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe
Q 010777 430 EPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK 462 (501)
Q Consensus 430 ~~v~~l~~spdg~-~lasgs~Dg~i~iw~~~~~~ 462 (501)
.++..+.|.|... .+++++.||.|-||.+..+.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8999999999876 78889999999999997654
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=179.27 Aligned_cols=249 Identities=22% Similarity=0.415 Sum_probs=178.2
Q ss_pred CCEEEEEECCCcEEEEecCCCCC-CCCCCCCCceEEEE---EeeccccccCCCCeEEEEECCC-CCEEEEEeCCCeEEEE
Q 010777 165 GSLLASGSGDSTARIWTIADGTS-NGGAQNGPLNVLVL---KHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIW 239 (501)
Q Consensus 165 ~~~l~sgs~D~~i~iWd~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw 239 (501)
|+++|.|..|..|.|||+.-... .+..+.|....... +.......+|+..|.+|+|+.. ...|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 57999999999999999852211 11111111000000 0111123467888999999875 4689999999999999
Q ss_pred ECC-CceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcce-eEeeeeccCCeEEEecC--CCceEEEecC
Q 010777 240 STN-GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWR--NNVSFATSST 314 (501)
Q Consensus 240 ~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 314 (501)
|+. +.+..++..|.+.|.++.|+|.. .+|++|+.|++|.+.|.+.... ...+.+ .+.+-.+.|. ....|+.+..
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEecCCCceeEEEecC
Confidence 987 45667788899999999999965 6899999999999999984221 122222 3445555564 4567888999
Q ss_pred CCeEEEEEcCCC-cceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce--eeecccCCCCEEEEEEcCCC
Q 010777 315 DNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTG 390 (501)
Q Consensus 315 d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~p~g 390 (501)
||+++-+|++.. +++.++..|.++|.++++++.- .+++|++.|+.+++|++..... +..-...-+...|.++.|+-
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence 999999999876 8999999999999999998765 5689999999999999864432 22211122334555555554
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE
Q 010777 391 SGTNNPNQQLILASASFDSTVKLWDVELGKLL 422 (501)
Q Consensus 391 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 422 (501)
. .+++.|+..+.++|||+.+...+
T Consensus 431 a--------~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 431 A--------FTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred c--------eEEEecCccceEEEeecccChhH
Confidence 3 47899999999999998766543
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=4.1e-22 Score=170.31 Aligned_cols=287 Identities=17% Similarity=0.245 Sum_probs=197.9
Q ss_pred cCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 010777 141 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 220 (501)
Q Consensus 141 ~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 220 (501)
+|+.++..|++|.+.|+++.|-.+++ |++|..-|.|++|++++...... ++. .+...|+.+.-
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~-------------~r~---~g~~~it~lq~ 64 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL-------------IRL---FGRLFITNLQS 64 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchh-------------hhh---hccceeeceee
Confidence 46778899999999999999988776 88999999999999987543211 110 12456777776
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCC-eEEEEeCC---------CcceeEe
Q 010777 221 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-TAIVWDVK---------TEEWKQQ 290 (501)
Q Consensus 221 s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-~i~iwd~~---------~~~~~~~ 290 (501)
-|+ ..+.+-+.|+.+.+|+...... +.-|.-.+.++.|.+.. +...+... ..-.++-+ .+...+.
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~--i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAF--ISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcce--EEEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCcccee
Confidence 776 5677889999999999865322 22233444445443321 11111110 11111111 1111111
Q ss_pred e------eeccCCeEEEecC----CCceEEEecCCCeEEEEEcCCC----------cceeeecCCCCceeEEEEcCCCCE
Q 010777 291 F------EFHSGPTLDVDWR----NNVSFATSSTDNMIYVCKIGEN----------RPIKTFAGHQGEVNCVKWDPTGSL 350 (501)
Q Consensus 291 ~------~~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~----------~~~~~~~~h~~~v~~v~~~~~~~~ 350 (501)
. ....+.+++.++. ....++++..+|.+.+|++..+ +.+..+..|..+|.++.+.+.-..
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC
Confidence 0 1123455666543 2234567888999999999886 333445578999999999876666
Q ss_pred EEEEeCCCeEEEEeCCCC--ce-e-eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee
Q 010777 351 LASCSDDVTAKIWNMKQD--KY-V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 426 (501)
Q Consensus 351 l~s~s~Dg~i~iwd~~~~--~~-~-~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 426 (501)
=++|+.+..+..|++... .+ + .++......+..+...|++. ++||+++|+.||+|..++..++..++
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K---------IlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK---------ILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc---------EEeecccCCcEEEEEeccCCchhhhh
Confidence 678888889999987643 11 1 11122233466677778886 89999999999999999999999999
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 427 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 427 ~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
-|+..|++++|+|+...+|++|.|++|-+|++
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999986
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2.4e-21 Score=184.31 Aligned_cols=285 Identities=21% Similarity=0.281 Sum_probs=201.5
Q ss_pred eEEEECCC---CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 010777 157 CACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 233 (501)
Q Consensus 157 ~~~~~sp~---~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 233 (501)
.++.|++- .++||.+-.||.|.++|........ .-..++ ....|...|..+.|-|....|++++.|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-------ee~~lk----~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-------EERQLK----KPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcch-------hhhhhc----ccccccceeEeeccCCCceeEEEccCC
Confidence 34667663 4688999999999999976432110 000011 123456789999999977889999999
Q ss_pred CeEEEEECCCce-eE--eecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcce-------eEeeee---------
Q 010777 234 GQARIWSTNGDL-KC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-------KQQFEF--------- 293 (501)
Q Consensus 234 g~i~iw~~~~~~-~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~-------~~~~~~--------- 293 (501)
.++++||+.+.. .. .+.+|.+.|.+++|.|.+ ..|++|+.||.|.|||++.... ...+..
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 999999987543 22 478999999999999976 4688999999999999864320 001111
Q ss_pred -----------cc----CCeEEEecCCCceEEEecC-CCeEEEEEcCCCcce--------eeecCC---CCceeEEEEcC
Q 010777 294 -----------HS----GPTLDVDWRNNVSFATSST-DNMIYVCKIGENRPI--------KTFAGH---QGEVNCVKWDP 346 (501)
Q Consensus 294 -----------~~----~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~~--------~~~~~h---~~~v~~v~~~~ 346 (501)
+. +.|..+-|.++..+++++. |+.|+|||++..... ..+..| ...+.++....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 11 1234456677788888876 999999999875432 222233 23467788888
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc--eeeecccCCCCEEE--EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-
Q 010777 347 TGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYT--IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL- 421 (501)
Q Consensus 347 ~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~v~~--i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~- 421 (501)
.|.+|...+.|+.|.+|++.+.. ++..+.++...-.. -..+|++. +|++|+.|...++|.+.+...
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---------~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---------SLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc---------eEeccCCCcceeeeeecCccCC
Confidence 88887666679999999987543 33334333222111 13456664 799999999999999987653
Q ss_pred EEEeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCC
Q 010777 422 LYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG 461 (501)
Q Consensus 422 ~~~~~~h~~~v~~l~~spdg-~~lasgs~Dg~i~iw~~~~~ 461 (501)
...+.||...|++++|.|.. .-+||++.|.+++||++..+
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 45678999999999998864 45777899999999998654
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.7e-21 Score=175.86 Aligned_cols=244 Identities=17% Similarity=0.288 Sum_probs=187.5
Q ss_pred CccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 010777 152 HTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 230 (501)
Q Consensus 152 H~~~V~~~~~sp~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 230 (501)
-..+|.+++|.|+|+ .++++|--..++.||+.+.+..+- +...+ ...+.+.....|+++++|+..
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~-----------~~~~g---~e~~~~e~FeVShd~~fia~~ 321 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL-----------KPPYG---VEEKSMERFEVSHDSNFIAIA 321 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccc-----------cCCCC---cccchhheeEecCCCCeEEEc
Confidence 356899999999998 999999999999999987653221 11111 123457778889999999999
Q ss_pred eCCCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceE
Q 010777 231 SYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 309 (501)
Q Consensus 231 ~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
|..|.|.|-..... ...++ .-.+.|..++|+.+++.|++++.+|.|.+||++...++..|....
T Consensus 322 G~~G~I~lLhakT~eli~s~-KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-------------- 386 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSF-KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-------------- 386 (514)
T ss_pred ccCceEEeehhhhhhhhhee-eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC--------------
Confidence 99999999876543 33333 356789999999999999999999999999999876655443211
Q ss_pred EEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC------CceeeecccCCCCEEE
Q 010777 310 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------DKYVHDLREHSKEIYT 383 (501)
Q Consensus 310 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~------~~~~~~~~~~~~~v~~ 383 (501)
.+ .-++++.++++.+||+||..|.|.|||.++ .+++..+......|.+
T Consensus 387 -------~v-------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 387 -------SV-------------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred -------cc-------------------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 10 124678889999999999999999999653 3556666667778999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEE--eCCCeEEEEeCCCCeEEEEeeC---CCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 384 IRWSPTGSGTNNPNQQLILASA--SFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sg--s~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
+.|+|++. +||.+ .....+|+-.+.+......+.. --+.|+|++|||.|.|||.|..+|.+.+|.+
T Consensus 441 l~Fn~d~q---------iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 441 LQFNHDAQ---------ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeCcchh---------hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 99999986 44444 4577899988876655444432 2345899999999999999999999999987
Q ss_pred C
Q 010777 459 K 459 (501)
Q Consensus 459 ~ 459 (501)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 5
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.2e-22 Score=200.99 Aligned_cols=275 Identities=23% Similarity=0.436 Sum_probs=209.5
Q ss_pred EEEECCCCC-EEEEE----------eCCCeEEEEECCC---c----eeEeecCCCCCEEEEEecCCCCE----EEEEecC
Q 010777 217 TLDWNGEGT-LLATG----------SYDGQARIWSTNG---D----LKCTLSKHKGPIFSLKWNKKGDY----LLTGSCD 274 (501)
Q Consensus 217 ~~~~s~~~~-~l~sg----------~~dg~i~iw~~~~---~----~~~~~~~h~~~V~~l~~~~~~~~----l~s~s~D 274 (501)
.++|+|.+. ++++| +.+.++-||.+.- . ....+. ....-+.|+|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888775 45444 3345566665421 1 111111 2234578999887765 7788889
Q ss_pred CeEEEEeCCCc------ceeEeeeeccCCeEEEecCC--CceEEEecCCCeEEEEEcCCCcceeeec--CCCCceeEEEE
Q 010777 275 KTAIVWDVKTE------EWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKW 344 (501)
Q Consensus 275 ~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~v~~ 344 (501)
|.|.+||.... ..+.++..|.++|..++|.. ...+++|+.+|.|++||+.....-..+. .-...|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997642 34567788999999999964 4578999999999999998754333332 13467999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEeCCCCceeeecccCCC--CEEEEEEcCCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCC
Q 010777 345 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVEL 418 (501)
Q Consensus 345 ~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~p~g~~~~~~~~~~~l~sgs~d---g~i~iwd~~~ 418 (501)
+.. .+.|++++.+|.+.|||++..+.+..+..+.. .+..+.|+|+... .|++++.| -.|.+||+|.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--------ql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--------QLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce--------eeeeecCCCCCceeEeecccc
Confidence 875 45689999999999999999988877766654 4678999998763 34444443 3699999985
Q ss_pred C-eEEEEeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCCC-CEEEEEECCCeE
Q 010777 419 G-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEG-DKIAACFANHTV 494 (501)
Q Consensus 419 ~-~~~~~~~~h~~~v~~l~~spdg-~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g-~~la~~~~d~~v 494 (501)
- ..+.++.+|...|.++.|++.+ .+|+|++.|++|.+|+.++|+++..+...+ .++.+.|.|.. ..+|+++-+|.|
T Consensus 242 assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 4 4667788999999999999977 899999999999999999999999887643 58999999976 589999999999
Q ss_pred EEEEee
Q 010777 495 CVLDFR 500 (501)
Q Consensus 495 ~v~~~~ 500 (501)
.||.+.
T Consensus 322 ~I~sl~ 327 (1049)
T KOG0307|consen 322 SIYSLQ 327 (1049)
T ss_pred eeeeee
Confidence 999874
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=5.4e-21 Score=176.74 Aligned_cols=262 Identities=18% Similarity=0.302 Sum_probs=204.5
Q ss_pred ceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 010777 155 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 233 (501)
Q Consensus 155 ~V~~~~~sp~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 233 (501)
+|+.+.|+.... .+++-+.|..|++|.-... . +. +.......+ ..-.|++......|+++||..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~------~~--Vp~~~k~~g------d~~~Cv~~~s~S~y~~sgG~~ 100 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T------PE--VPRVRKLTG------DNAFCVACASQSLYEISGGQS 100 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCC-C------Cc--cceeecccc------chHHHHhhhhcceeeeccCcC
Confidence 488999987764 3445567899999974321 0 00 111111111 123444444555899999999
Q ss_pred CeEEEEECCCceeE-eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe-EEEecCCC--ceE
Q 010777 234 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNN--VSF 309 (501)
Q Consensus 234 g~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 309 (501)
+.|+|||+..++.+ .+..|+..|+++.++-...||++++-.|-|.|..+.++.....|....+.+ ..+.|... ..+
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceee
Confidence 99999999866544 578899999999999999999999999999999999988777777665554 46777654 445
Q ss_pred EEecCCCeEEEEEcCCCcceeee-cCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 310 ATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 310 ~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
.+++++|.|.+||+....|+..+ ..|..+...|+|+|.. .+|++.+.|..|.+||....+....+. ...+..+++|.
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~ 259 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFS 259 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeec
Confidence 77899999999999988887665 4799999999999975 568999999999999998776655553 45678999999
Q ss_pred CCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEeeCCCCCeEEEEECCCC
Q 010777 388 PTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG 441 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg 441 (501)
++|. +|+.|+..|.|..||++. ..++..+..|...|++|+|-|..
T Consensus 260 ~~G~---------~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGT---------YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCce---------EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9996 899999999999999985 45788889999999999997764
No 166
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=169.38 Aligned_cols=293 Identities=17% Similarity=0.244 Sum_probs=209.9
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.-+.+|.+.|+++.||.++++|++||.|..+++|.+...-....+ .|+. +.+ ..|...|.|++|....++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~--KPI~------~~~--~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP--KPIG------VME--HPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC--CCce------ecc--CccccceEEEEEccCCee
Confidence 347799999999999999999999999999999997642111110 1111 111 234578999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEeecCCCC---CEEEEEecCCCCEEEEEecCCeEEEEeCCCccee-Eeeeec--cCCeEE
Q 010777 227 LATGSYDGQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFH--SGPTLD 300 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~--~~~~~~ 300 (501)
+++|+.+++|.+-|++.........|.. .|+.+..+|..+.|++.+.+|.|.+||.+..... ..+... ......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 9999999999999998776655555655 9999999999999999999999999999865422 111111 112233
Q ss_pred EecC--CCceEEEecCCCeEEEEEcCCCc-ceeeecCC---CC---ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-
Q 010777 301 VDWR--NNVSFATSSTDNMIYVCKIGENR-PIKTFAGH---QG---EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY- 370 (501)
Q Consensus 301 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h---~~---~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~- 370 (501)
+-|. ....+++.+..+-+-+|+++... ++..+.+. .. .-.++.|+|.|+.|.+--.-..-.+||+.+.++
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 4443 34567777888888999987643 33332222 11 235788999999988776666666788766443
Q ss_pred eeeccc-C-----CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----------C-------------eE
Q 010777 371 VHDLRE-H-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------G-------------KL 421 (501)
Q Consensus 371 ~~~~~~-~-----~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~----------~-------------~~ 421 (501)
+..+.. . ...+.+++|.-+ +-+++||.+-.|++|.+.. | +.
T Consensus 280 V~k~D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 280 VLKSDHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eEeccCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 322221 1 123444555443 2489999999999998642 1 23
Q ss_pred EEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010777 422 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 422 ~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~ 459 (501)
+..++||+..++.|.|+|...+|++.|-.+.++||.-.
T Consensus 350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 45689999999999999999999999999999999754
No 167
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=1e-21 Score=191.81 Aligned_cols=281 Identities=26% Similarity=0.455 Sum_probs=213.0
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
+..|.||...|+|+.|...|.+++||+.|..+|||...++.+. ....+|+..|+.++.+....
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccchhhh
Confidence 4568899999999999999999999999999999997665432 23345688899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 226 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
++++++.|..|++|.+. +..+..+.+|+++|++++|+|-. +.+.||++++||.+-.. ..+.
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~----~~y~---------- 307 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP----RIYV---------- 307 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccc----cccC----------
Confidence 99999999999999975 45566789999999999999954 78889999999986110 0000
Q ss_pred CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEE
Q 010777 305 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 384 (501)
Q Consensus 305 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i 384 (501)
..|.. +. -...+.++.|..++.-++||+.|+..+.|.+..-.+ +...+.-+
T Consensus 308 ---------------------prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~ 358 (1113)
T KOG0644|consen 308 ---------------------PRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFV 358 (1113)
T ss_pred ---------------------CCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEE
Confidence 01110 00 113455667777788899999999988886532111 11111111
Q ss_pred EEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEeCCCCee
Q 010777 385 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 385 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l-asgs~Dg~i~iw~~~~~~~ 463 (501)
.++.+.. .+.+++-.+-.+.+|++.+|..++.+.+|...++.+.++|-...+ .+++.||.+.|||+-.|..
T Consensus 359 t~ssd~~--------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 359 TRSSDLS--------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ecccccc--------ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 1111111 145666678889999999999999999999999999999977655 5899999999999999877
Q ss_pred EEEE-ecCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 464 VKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 464 ~~~~-~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
++.+ .+++.+.+..||+||..++..-.-|.+.+++
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence 6655 4567788999999999998887777777765
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=3.8e-20 Score=167.46 Aligned_cols=293 Identities=22% Similarity=0.332 Sum_probs=195.0
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCC---CCCCCCCceEEEEEeeccccccCCCCeEEEEECCC
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN---GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 223 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 223 (501)
..|..|...|++|.|+|+|.+||||+.+|.|.+|....-... ......+-...+.+.+. +|...|+.++|+|+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr----~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR----GHRDDIYDLAWSPD 134 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec----ccccchhhhhccCC
Confidence 467889999999999999999999999999999986531110 00011111122233333 36788999999999
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 224 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
+.++++|+.|+.+++||+. +.....+..|...|..++|.|.++++++-+.|...+.+.+........... .+.
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~---~~m--- 208 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL---DIM--- 208 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee---eEe---
Confidence 9999999999999999986 566678889999999999999999999999999777776654443322211 000
Q ss_pred cCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC----CCe-----EEEEeCC-CCceee
Q 010777 303 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVT-----AKIWNMK-QDKYVH 372 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~----Dg~-----i~iwd~~-~~~~~~ 372 (501)
.+-....+.-.++.+-....++ .-...++|+|+|.++++... .+. ..+|+-+ ..+++.
T Consensus 209 ------~~~~~~~~e~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~ 276 (434)
T KOG1009|consen 209 ------PAKAFNEREGKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA 276 (434)
T ss_pred ------eecccCCCCcceeeeeecCchh------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee
Confidence 0000111100111111111111 12456889999999887632 122 2344322 123445
Q ss_pred ecccCCCCEEEEEEcCCCC----CC------CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-eCCCCCeEEEEECCCC
Q 010777 373 DLREHSKEIYTIRWSPTGS----GT------NNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG 441 (501)
Q Consensus 373 ~~~~~~~~v~~i~~~p~g~----~~------~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg 441 (501)
.+.....+...++|+|--- .. ..| -.+++|.++ .+.|.|||.++..++..+ +-|-.+|++++|++||
T Consensus 277 ~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp-yrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg 354 (434)
T KOG1009|consen 277 RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP-YRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG 354 (434)
T ss_pred ecCCCCcceEEEEeeeeEEEeccccccccccccc-cceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCC
Confidence 5666667777888776321 00 011 123455555 457999999988887765 4478899999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCee
Q 010777 442 EYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 442 ~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
.+|+..|.||.+-+-.++.+++
T Consensus 355 ~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 355 SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cEEEEeccCCceEEEEEcchhc
Confidence 9999999999988887776554
No 169
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=3.5e-20 Score=160.47 Aligned_cols=256 Identities=26% Similarity=0.428 Sum_probs=185.0
Q ss_pred EEccCCccceeEEEECCCC-CEEEEEECC-------CcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEE
Q 010777 147 TILEGHTSEVCACAWSPAG-SLLASGSGD-------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 218 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D-------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 218 (501)
.+|..|.+.|..++-+|.. ++|+|+-.| ..+-||.+....... +...+..+..-...+.+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-------~~~tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-------NSSTLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-------ccchhhHhhcCCHHHhCceeeE
Confidence 3577789999999999965 566666542 247899886432110 1111111111112334579999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCcee--Eee-----cCCCCCEEEEEecC--CCCEEEEEecCCeEEEEeCCCcceeE
Q 010777 219 DWNGEGTLLATGSYDGQARIWSTNGDLK--CTL-----SKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ 289 (501)
Q Consensus 219 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~--~~~-----~~h~~~V~~l~~~~--~~~~l~s~s~D~~i~iwd~~~~~~~~ 289 (501)
.|.|++..+++-. |..|.+|+...... ..+ ..|....++-+|+| +++.+++.+ |+++..||++++....
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNN 207 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhc
Confidence 9999999888765 88999999764322 111 23566778889988 667777654 8999999999764321
Q ss_pred eeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC-EEEEEeCCCeEEEEeCCC-
Q 010777 290 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ- 367 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~i~iwd~~~- 367 (501)
. .-.+|...|..+.|+|+.+ +|+||++||.|+|||.+.
T Consensus 208 s----------------------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 208 S----------------------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred c----------------------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 1 1235777889999999875 579999999999999975
Q ss_pred CceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC----------------------------
Q 010777 368 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---------------------------- 419 (501)
Q Consensus 368 ~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~---------------------------- 419 (501)
..++.++..|...+.+++|+|... -++++|+.|..|.+|....-
T Consensus 248 k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 248 KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 456889999999999999988653 37889999999999964321
Q ss_pred -eEEEEeeCCCCCeEEEEECCCCCEE-EEEeCCCcEEEEeCC
Q 010777 420 -KLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLK 459 (501)
Q Consensus 420 -~~~~~~~~h~~~v~~l~~spdg~~l-asgs~Dg~i~iw~~~ 459 (501)
..+.++..|...|++++||.-..++ |+-|.||++.|=.+.
T Consensus 320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1234667899999999999877765 778999999987765
No 170
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=173.33 Aligned_cols=271 Identities=18% Similarity=0.293 Sum_probs=197.9
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
|+.-|.||.|+.....+++++.+..++-|++.+.... ....-+-.++...+..+..... -.....|+.++
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p~df~pt~~h~~~rs~~~---------g~~~d~~~i~s 82 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLPDDFVPTDMHLGGRSSGG---------GKGSDTLLICS 82 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCCcccCCccccccccccCC---------CCCcceEEEEc
Confidence 6666789999988887777766555666665442210 0000000001111111111000 11235688889
Q ss_pred CCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE
Q 010777 232 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 232 ~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
.||.+.|-+..+.....+..|.++|.+-.|+|+|.-|++++.||.|++|. ++|-+..++.....++.++.|.++..-+.
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 99999999988888888899999999999999999999999999999998 45555555555667899999977665555
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCC
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 391 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~ 391 (501)
-...+.+.+-.+..+..+..++.|.+-|.++.|++...++++|++|-..+|||.. +..+.+-..|.-+|++++|.|+.
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~- 239 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK- 239 (737)
T ss_pred EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-
Confidence 5556677777777777777889999999999999999999999999999999964 55666667788999999999984
Q ss_pred CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010777 392 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 456 (501)
Q Consensus 392 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw 456 (501)
.++.+|.+ ++|+= +...+.|..++|||||..++.|...|.+.+=
T Consensus 240 ---------~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 ---------DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 45666643 44421 1234679999999999999999988876654
No 171
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=2e-19 Score=177.68 Aligned_cols=241 Identities=21% Similarity=0.352 Sum_probs=183.5
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCcee-------EeecCCCCCEEEEEecCCC--CEEEEEecCCeEEEEe
Q 010777 212 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-------CTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWD 281 (501)
Q Consensus 212 ~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~-------~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~i~iwd 281 (501)
...|+|++|+| +..+++.|.++|+|.+||+..... .....|..+|+.+.|..+- .-|+++|.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999999 667889999999999999764322 2345689999999997654 4499999999999998
Q ss_pred CCCcce-eE-----eee------eccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCc--------ceeeecCCCCce
Q 010777 282 VKTEEW-KQ-----QFE------FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENR--------PIKTFAGHQGEV 339 (501)
Q Consensus 282 ~~~~~~-~~-----~~~------~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~h~~~v 339 (501)
++.-.. .. ... .....+..+.|. +...|+.|+..|.|+........ ++..+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 764322 11 011 112234556664 56789999999999985543322 233556788999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 340 NCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||.-. .+++++..||+|.|||+..
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhhhhc
Confidence 999999988665555559999999987 6667777777778899999999765 4899999999999999874
Q ss_pred C--eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010777 419 G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 419 ~--~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~ 460 (501)
. .++.+.+-+....+.+.|+++|+.|+.|...|+|++|++..
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3 34555555566678889999999999999999999999864
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-18 Score=146.36 Aligned_cols=267 Identities=19% Similarity=0.293 Sum_probs=185.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCC----------c-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCC
Q 010777 215 VTTLDWNGEGTLLATGSYDGQARIWSTNG----------D-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 283 (501)
Q Consensus 215 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~----------~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~ 283 (501)
|..-+|+|.+++|+.|..+|.|.+..+.. + ....+++|.++|+.++|+. .+|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeeh
Confidence 56668899999999999999999997531 2 2335589999999999983 4566665 6999998765
Q ss_pred Ccce----e----EeeeeccC-----CeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC
Q 010777 284 TEEW----K----QQFEFHSG-----PTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 349 (501)
Q Consensus 284 ~~~~----~----~~~~~~~~-----~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 349 (501)
...- . .....+.+ .++++-.. ....++.++.|+.++-||+..++..++|+||+..|.++.-.....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 3321 1 11112221 23333222 234455566999999999999999999999999999999865666
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeecccCC----------CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 010777 350 LLASCSDDVTAKIWNMKQDKYVHDLREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 419 (501)
Q Consensus 350 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~----------~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 419 (501)
.+++|++||++||||.++++.+..+.... ..|.+++-+.+ .|+.| ....+.+|+++..
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-----------WlvCG-gGp~lslwhLrss 237 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-----------WLVCG-GGPKLSLWHLRSS 237 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-----------eEEec-CCCceeEEeccCC
Confidence 78899999999999999999887654321 22444443322 45544 4567999999987
Q ss_pred eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-CCCEEEEEECCCC-CEEEEEECCCeEEEE
Q 010777 420 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG-DKIAACFANHTVCVL 497 (501)
Q Consensus 420 ~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~g-~~la~~~~d~~v~v~ 497 (501)
++...+. -..+|..+.|-.| .++++|..+.|.-|.+. |.+-...+. ....++..|+..- ++|.+++....+.|+
T Consensus 238 e~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 238 ESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 7665554 3355888888654 77788878889999874 444444443 3457888888766 455555555567666
Q ss_pred -Eee
Q 010777 498 -DFR 500 (501)
Q Consensus 498 -~~~ 500 (501)
|++
T Consensus 314 ~~~~ 317 (325)
T KOG0649|consen 314 KDFR 317 (325)
T ss_pred eccc
Confidence 443
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8.1e-18 Score=166.57 Aligned_cols=279 Identities=22% Similarity=0.383 Sum_probs=196.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 284 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~ 284 (501)
.|...++|.++||.++++++|..||.|.+|.--+ .....+.-|..+|.+++|+++|.+|+||+..+.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3556689999999999999999999999997433 23456778999999999999999999999999999999999
Q ss_pred cceeEeeeeccCCeEEEecCC-CceEEEecCCCeEEEEEcCCCcc---eeeec--------CCCCceeEEEEcCCCCEEE
Q 010777 285 EEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRP---IKTFA--------GHQGEVNCVKWDPTGSLLA 352 (501)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~---~~~~~--------~h~~~v~~v~~~~~~~~l~ 352 (501)
++ .+-+..-.+++..+.+.+ ...++....|+.|.+........ +..+. +..+-.+.++++|.-+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 88 444555667787777754 45566777899888877643221 11111 1234567889999777788
Q ss_pred EEeCCCeEEEEeCCCCceeeeccc-----C------CCCEEEEEEcCCCCCCCCCCCcEEEEEEe--------CC--CeE
Q 010777 353 SCSDDVTAKIWNMKQDKYVHDLRE-----H------SKEIYTIRWSPTGSGTNNPNQQLILASAS--------FD--STV 411 (501)
Q Consensus 353 s~s~Dg~i~iwd~~~~~~~~~~~~-----~------~~~v~~i~~~p~g~~~~~~~~~~~l~sgs--------~d--g~i 411 (501)
-++..|.|.+||+-+...+..+.. + .-.+++++.+-.|. +++|+- .| -.+
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs---------~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS---------WMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce---------EEEEeeeeehhhhccCceEEE
Confidence 899999999999988776655431 1 12344455444443 444432 22 357
Q ss_pred EEEeCCCCeEEEE-----eeCCCCCeEEEEEC-CCCC-EEEEEeCCCcEEEEeCC------CCee------EEEEecCCC
Q 010777 412 KLWDVELGKLLYS-----LNGHREPVYSLAFS-PTGE-YLASGSLDKSMHIWSLK------EGKI------VKTYTGNGG 472 (501)
Q Consensus 412 ~iwd~~~~~~~~~-----~~~h~~~v~~l~~s-pdg~-~lasgs~Dg~i~iw~~~------~~~~------~~~~~~~~~ 472 (501)
|+|-......-+. ...|...+...+|. |... .++++|.||.++||-+. .+.. +..| .+..
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~ 511 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTP 511 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCc
Confidence 8897654333222 24677666655554 4333 89999999999999883 2221 2222 3557
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 473 IFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 473 i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+.+++|+.||+.||.+. +++|.+||.+
T Consensus 512 i~a~~fs~dGslla~s~-~~~Itiwd~~ 538 (792)
T KOG1963|consen 512 ITALCFSQDGSLLAVSF-DDTITIWDYD 538 (792)
T ss_pred ccchhhcCCCcEEEEec-CCEEEEecCC
Confidence 89999999997666555 6689999864
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=1.6e-17 Score=159.17 Aligned_cols=220 Identities=19% Similarity=0.319 Sum_probs=155.2
Q ss_pred CceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeecc-----------------
Q 010777 144 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG----------------- 206 (501)
Q Consensus 144 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 206 (501)
....+|+||++.|+|++|+.||+++|||+.|..|.+|.-.-...........+.-+.+..+..
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~q 123 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQ 123 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhh
Confidence 345789999999999999999999999999999999975422111111111111111100000
Q ss_pred ---ccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec---CCCCCEEEEEecCCC-----CEEEEEecCC
Q 010777 207 ---RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKG-----DYLLTGSCDK 275 (501)
Q Consensus 207 ---~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~---~h~~~V~~l~~~~~~-----~~l~s~s~D~ 275 (501)
.....+..|.+++|..||++|+.|-.+|+|.|-+..++....+. +.+.+|++++|+|.. ..++...+..
T Consensus 124 K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q 203 (1081)
T KOG1538|consen 124 KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ 203 (1081)
T ss_pred hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence 00122456889999999999999999999999998776665554 467899999999964 4678888888
Q ss_pred eEEEEeCCCcceeEeeeeccCCeEEEec-CCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE
Q 010777 276 TAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 354 (501)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 354 (501)
++.+|.+.... +..-..-.-...++.+ .+...+..++.|+.+.++.. .+..+.++......|+.++.+|++++++.|
T Consensus 204 TLSFy~LsG~~-Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 204 TLSFYQLSGKQ-IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred eeEEEEeccee-ecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 99888875432 2211111112344544 45566778888888888754 344455555566789999999999999999
Q ss_pred eCCCeEEEEeC
Q 010777 355 SDDVTAKIWNM 365 (501)
Q Consensus 355 s~Dg~i~iwd~ 365 (501)
+.||+|-.|++
T Consensus 282 CqDGTiACyNl 292 (1081)
T KOG1538|consen 282 CQDGTIACYNL 292 (1081)
T ss_pred EccCeeehhhh
Confidence 99999999976
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=1.2e-18 Score=151.00 Aligned_cols=258 Identities=20% Similarity=0.374 Sum_probs=189.7
Q ss_pred CCeEEEEECCCc----eeEeecCCCCCEEEEEecCCCCE-EEEEecC-------CeEEEEeCCCcc---------eeEee
Q 010777 233 DGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD-------KTAIVWDVKTEE---------WKQQF 291 (501)
Q Consensus 233 dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D-------~~i~iwd~~~~~---------~~~~~ 291 (501)
|+.|.+-..+.+ ....|..|.+.|+.|+-+|-... |+|+..+ ..+.||.+.... ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 567776654322 22356778899999999997655 4555442 246799875321 22223
Q ss_pred e-eccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcc-eeee-----cCCCCceeEEEEcC--CCCEEEEEeCCCeEEE
Q 010777 292 E-FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDP--TGSLLASCSDDVTAKI 362 (501)
Q Consensus 292 ~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~v~~v~~~~--~~~~l~s~s~Dg~i~i 362 (501)
. .+.+.+.++.|.++..-+.+-.+..|.+|++..... +..+ .+|....++-+|+| +|+.+++. .|++++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 2 334578899998877777777799999999987655 2222 24566788999998 67778766 5789999
Q ss_pred EeCCCCceeeecc-cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEeeCCCCCeEEEEECCC
Q 010777 363 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 363 wd~~~~~~~~~~~-~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd 440 (501)
||+++.+....+. +|...+..+.|+|+- +++|++|+.||.|||||.+. ..+++++.+|...|+++.|+|.
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk--------q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK--------QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCc--------eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence 9999887766554 677888999887764 57999999999999999985 4578899999999999999996
Q ss_pred -CCEEEEEeCCCcEEEEeCCCC-----------------------------eeEEEEec-CCCEEEEEECCCCC-EEEEE
Q 010777 441 -GEYLASGSLDKSMHIWSLKEG-----------------------------KIVKTYTG-NGGIFEVCWNKEGD-KIAAC 488 (501)
Q Consensus 441 -g~~lasgs~Dg~i~iw~~~~~-----------------------------~~~~~~~~-~~~i~~~~ws~~g~-~la~~ 488 (501)
.++|.+||.|..|.+|....- .++.+|.. ...|++++||.-.- .+|+-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 578899999999999964210 01224433 45699999998665 66677
Q ss_pred ECCCeEEEEEe
Q 010777 489 FANHTVCVLDF 499 (501)
Q Consensus 489 ~~d~~v~v~~~ 499 (501)
+.||.|.|=.+
T Consensus 350 SYDGRviIs~V 360 (370)
T KOG1007|consen 350 SYDGRVIISSV 360 (370)
T ss_pred ccCceEEeecC
Confidence 99999887554
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-18 Score=171.97 Aligned_cols=330 Identities=19% Similarity=0.255 Sum_probs=219.5
Q ss_pred cCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEE
Q 010777 150 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 229 (501)
Q Consensus 150 ~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 229 (501)
..|+-.++|.++||.++++|+|-.||.|.+|.=... .... +... ...-|...|.+++|+++|.+|+|
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-~~~~--------~t~t----~lHWH~~~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-SDDS--------ETCT----LLHWHHDEVNSLSFSSDGAYLLS 268 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccc-cccc--------ccce----EEEecccccceeEEecCCceEee
Confidence 357778999999999999999999999999963220 0000 0001 11235678999999999999999
Q ss_pred EeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCC-----------e
Q 010777 230 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----------T 298 (501)
Q Consensus 230 g~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-----------~ 298 (501)
||..|.+-+|.........+..-.++|..+.++|++.+.+....|..|.+-...+.+....+.+-..+ .
T Consensus 269 GG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred cccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 99999999999887767778888999999999999999999999999999877665544433322111 1
Q ss_pred EEEecCC-CceEEEecCCCeEEEEEcCCCcceeeec-----CC------CCceeEEEEcCCCCEEEEEe--------CCC
Q 010777 299 LDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-----GH------QGEVNCVKWDPTGSLLASCS--------DDV 358 (501)
Q Consensus 299 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h------~~~v~~v~~~~~~~~l~s~s--------~Dg 358 (501)
..+...+ ...++..+..+.|..|++-+...+..+. .+ .-.+++++.+..|.+++|.- .||
T Consensus 349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 2222322 3456667778889999887766554432 11 23467888888899988862 343
Q ss_pred --eEEEEeCCCCce----eeec-ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------CCe----E
Q 010777 359 --TAKIWNMKQDKY----VHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------LGK----L 421 (501)
Q Consensus 359 --~i~iwd~~~~~~----~~~~-~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~------~~~----~ 421 (501)
.+++|-...... ...+ ..|...+...++.+..+. ...++++.||.++||-+. ... +
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs-------~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS-------VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc-------ceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence 467886543321 1111 245555555555444331 267899999999999773 222 2
Q ss_pred EEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeeEEEEec-CCCEEEEEECCCC--CEEEEEECCCeEEEE
Q 010777 422 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEG--DKIAACFANHTVCVL 497 (501)
Q Consensus 422 ~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~-~~~~~~~~~-~~~i~~~~ws~~g--~~la~~~~d~~v~v~ 497 (501)
...-.-|..++++++|+.||..| +.|.|++|.+||..+ ..+..+... +..+..+++.... ...+.......+.+|
T Consensus 502 ~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W 580 (792)
T KOG1963|consen 502 KAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVW 580 (792)
T ss_pred eeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehH
Confidence 22212378899999999999655 556789999999988 444433322 2223344444322 233334455667777
Q ss_pred Eee
Q 010777 498 DFR 500 (501)
Q Consensus 498 ~~~ 500 (501)
|+.
T Consensus 581 Nll 583 (792)
T KOG1963|consen 581 NLL 583 (792)
T ss_pred hhh
Confidence 763
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=5.1e-19 Score=155.70 Aligned_cols=235 Identities=21% Similarity=0.342 Sum_probs=177.3
Q ss_pred EEEEEecCCCCEEEEEecCCeEEEEeCCCcce------------eEeeeecc-CCeEEEecC--------CCceEEEecC
Q 010777 256 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW------------KQQFEFHS-GPTLDVDWR--------NNVSFATSST 314 (501)
Q Consensus 256 V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~------------~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~ 314 (501)
..++.|+|+|..|++-+.|..+.+|++...-. ...+.... ..+.+..|- ....+++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 35789999999999999999999998753211 11222222 223444442 3457889999
Q ss_pred CCeEEEEEcCCCcceeeecC--CCCc---eeEEEEcCCCCEEEEEeCCCeEEEEeC-CCCcee--eeccc-----CCCCE
Q 010777 315 DNMIYVCKIGENRPIKTFAG--HQGE---VNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKYV--HDLRE-----HSKEI 381 (501)
Q Consensus 315 d~~i~~~~~~~~~~~~~~~~--h~~~---v~~v~~~~~~~~l~s~s~Dg~i~iwd~-~~~~~~--~~~~~-----~~~~v 381 (501)
+.-|++|+.-+++....|.+ |..+ ..+++|+|||..|++| ....|++||+ +.++.. ..... ..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999988877666654 3333 4589999999999766 5679999998 555432 22222 25667
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeC-CCcEEEEeCCC
Q 010777 382 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKE 460 (501)
Q Consensus 382 ~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~-Dg~i~iw~~~~ 460 (501)
.+++|+|.... .++.|+.-..+-|+.-..+.+++.+.+|.+.|+.+.|.++|+.|.+|+. |-.|..||++.
T Consensus 211 sc~a~sP~~~~--------~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 211 SCFAFSPMDSK--------TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeeccCCCCc--------ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 88899987653 6899999999999998899999999999999999999999999999885 77899999986
Q ss_pred Ce-eEEEEec-----CCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 461 GK-IVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 461 ~~-~~~~~~~-----~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
-+ .+..+.. +..| -+...|+|++||+|+.+|.|+|||++
T Consensus 283 ~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred ccchhhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecC
Confidence 43 3333322 3333 34568999999999999999999986
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.2e-18 Score=172.85 Aligned_cols=284 Identities=22% Similarity=0.361 Sum_probs=198.6
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CCCEEEE
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLAT 229 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~~~l~s 229 (501)
....-..+.|+|-...++++...-.|++||...++......++. .....|+.+.+-. |..++++
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--------------~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--------------FPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--------------CCCCccceeeeecccchhheee
Confidence 33355678899999999999888899999998876543333221 1235588887754 5678999
Q ss_pred EeCCCeEEEEECCC------ceeEee---cCC----CCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccC
Q 010777 230 GSYDGQARIWSTNG------DLKCTL---SKH----KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 296 (501)
Q Consensus 230 g~~dg~i~iw~~~~------~~~~~~---~~h----~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 296 (501)
|+.||.||||+-.. +.+..+ .++ .+.-.-+.|.....+|++++.-+.|+|||+....+...+..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--- 1205 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY--- 1205 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc---
Confidence 99999999997421 111111 111 11113456777666676666677788888766543332211
Q ss_pred CeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEc-CCCCEEEEEeCCCeEEEEeCCCC---ceee
Q 010777 297 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQD---KYVH 372 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~s~Dg~i~iwd~~~~---~~~~ 372 (501)
+....|+++.-+ +.|+.|+.|-.||.||+||.+.. ..+.
T Consensus 1206 -------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1206 -------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred -------------------------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 112234444332 23789999999999999998753 3466
Q ss_pred ecccCCCC--EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE--EEEeeCCC--C-CeEEEEECCCCCEEE
Q 010777 373 DLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHR--E-PVYSLAFSPTGEYLA 445 (501)
Q Consensus 373 ~~~~~~~~--v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~h~--~-~v~~l~~spdg~~la 445 (501)
..+.|... |..+.+.+.|-. -|++|+.||.|++||++.... ..++..|. + ..+++..|++...+|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~--------elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLG--------ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred eecccCCcccceeEEeecCCCc--------ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeee
Confidence 67778777 899999887753 388999999999999997422 23344443 3 489999999999999
Q ss_pred EEeCCCcEEEEeCCCCeeEEEEec--------CCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 446 SGSLDKSMHIWSLKEGKIVKTYTG--------NGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 446 sgs~Dg~i~iw~~~~~~~~~~~~~--------~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
+|+. +.|+||++...+ +..+.. .+.+.+++|||---+||+|+.|.+|.||..
T Consensus 1321 sGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1321 SGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 9999 999999986433 333221 345789999999999999999999999965
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=8.9e-20 Score=171.67 Aligned_cols=297 Identities=22% Similarity=0.288 Sum_probs=200.2
Q ss_pred EEECCCC--CEEEEEECCCcEEEE--ecCCCCCCCCCC---CCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 159 CAWSPAG--SLLASGSGDSTARIW--TIADGTSNGGAQ---NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 159 ~~~sp~~--~~l~sgs~D~~i~iW--d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
+++.|.+ ...++...|...++| ++..-....... ..+.........+.....|...|+.++|.+....|++|+
T Consensus 234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~s 313 (577)
T KOG0642|consen 234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITAS 313 (577)
T ss_pred ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEec
Confidence 5555653 366677777888888 543221110000 000000000001112233566789999999999999999
Q ss_pred CCCeEEEEECCC---------ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCc----------ceeEeee
Q 010777 232 YDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----------EWKQQFE 292 (501)
Q Consensus 232 ~dg~i~iw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~----------~~~~~~~ 292 (501)
.||++++|+++. ....+|.+|.+||.|+++.+.++++++|+.||+|+.|++... .....+.
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 999999999831 245689999999999999999999999999999999965421 2345677
Q ss_pred eccCCeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecCC--CCceeEEEEcCCCCE-EEEEeCCCeEEEEeCCCC
Q 010777 293 FHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQD 368 (501)
Q Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~-l~s~s~Dg~i~iwd~~~~ 368 (501)
+|.+.+..+.++ ...++++++.||+++.|......+ .+|..- .+.-.++++-..... .++...-+.--++++...
T Consensus 394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred ccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence 888888888775 455688999999999999887776 334322 233445555432211 111212222223333332
Q ss_pred ceeeeccc-------CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCC
Q 010777 369 KYVHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 441 (501)
Q Consensus 369 ~~~~~~~~-------~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg 441 (501)
..+..+.. ....+..+.+.|.+. +.+++..|+.|+++|..+++.++....|...++++++.|+|
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~---------~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTAD---------ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG 543 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCCC---------eeEecccCCceecccccccccchheeeccceecceeecCCC
Confidence 22222211 112355566667664 67889999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEE
Q 010777 442 EYLASGSLDKSMHIWSLKEGKIVK 465 (501)
Q Consensus 442 ~~lasgs~Dg~i~iw~~~~~~~~~ 465 (501)
.+|++|+.||.+++|.+....++.
T Consensus 544 ~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ceEEeecCCceeehhhccchheee
Confidence 999999999999999987544443
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1e-18 Score=157.64 Aligned_cols=209 Identities=20% Similarity=0.449 Sum_probs=170.3
Q ss_pred eecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCC
Q 010777 248 TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 326 (501)
Q Consensus 248 ~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 326 (501)
.+.+|+++|..++|+|-+ +.|+|||.|.+|+||.+..+.+... -.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------------------------------lt 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------------------------------LT 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------------------------------cc
Confidence 567999999999999965 5688999999999999865432211 12
Q ss_pred cceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEE
Q 010777 327 RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 405 (501)
Q Consensus 327 ~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sg 405 (501)
.|+..+.||...|--++|||.- +.|+|++.|.+|.||++.++..+.++. |...|+++.|+.+|+ +|++.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---------~l~Tt 191 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---------LLCTT 191 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc---------eeeee
Confidence 5677889999999999999975 678899999999999999999888877 999999999999997 89999
Q ss_pred eCCCeEEEEeCCCCeEEEEeeCCCCC-eEEEEECCCCCEEEEEe---CCCcEEEEeCCCC---eeEEEEecCCCEEEEEE
Q 010777 406 SFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGS---LDKSMHIWSLKEG---KIVKTYTGNGGIFEVCW 478 (501)
Q Consensus 406 s~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~spdg~~lasgs---~Dg~i~iw~~~~~---~~~~~~~~~~~i~~~~w 478 (501)
+.|..|||||.++++.+.+-.+|.+. -..+.|-.+|.++-||- .+..+-+|+..+- -....+....+|.-.=|
T Consensus 192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY 271 (472)
T ss_pred cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence 99999999999999999998888753 34567888888444442 4678999987653 33556666667777779
Q ss_pred CCCCCEEEEE-ECCCeEEEEEee
Q 010777 479 NKEGDKIAAC-FANHTVCVLDFR 500 (501)
Q Consensus 479 s~~g~~la~~-~~d~~v~v~~~~ 500 (501)
.+|.+.+..| -.|+.|+.|.+.
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEec
Confidence 9999877755 568999998763
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=6.9e-19 Score=150.73 Aligned_cols=276 Identities=16% Similarity=0.238 Sum_probs=189.4
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce-eEeec-CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcce
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 287 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~-~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 287 (501)
+++..|+++.|..+++ |++|..-|.|++|.+.+.. ...+. .|...|+.+.--|+ ..|.+-+.|..+.+|++.....
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 4678899999998876 8899999999999987643 34455 57778999988887 5789999999999999876554
Q ss_pred eEeeeeccCCeEEEecCC-------C-c-eEEEecCCC--eEEEEEcCCCcceeee----cCCCCceeEEEEcCC-CC--
Q 010777 288 KQQFEFHSGPTLDVDWRN-------N-V-SFATSSTDN--MIYVCKIGENRPIKTF----AGHQGEVNCVKWDPT-GS-- 349 (501)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~-------~-~-~~~~~~~d~--~i~~~~~~~~~~~~~~----~~h~~~v~~v~~~~~-~~-- 349 (501)
+.. |.-++..+.|-. . . .+......+ .+.+-|......++.. .+..+.+.|..+..+ +.
T Consensus 90 i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 90 ISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred EEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 332 222222222210 0 0 111110000 0122222221122211 133466777775433 33
Q ss_pred EEEEEeCCCeEEEEeCCCC----------ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 010777 350 LLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 419 (501)
Q Consensus 350 ~l~s~s~Dg~i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 419 (501)
+++.|.++|.+.+||+.++ +.+.....|..++.++.|.+... -=++|+.+..+..|.+...
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~---------rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD---------RGISGGADDKLVMYSLNHS 237 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc---------CCcCCCccccceeeeeccc
Confidence 4678899999999999987 33334456888999998876433 1246777778888877532
Q ss_pred --eEE--EEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCEEEEEECCCCCEEEEEECCCeE
Q 010777 420 --KLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTV 494 (501)
Q Consensus 420 --~~~--~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~-~~i~~~~ws~~g~~la~~~~d~~v 494 (501)
.+. .++.--.-.|..+..-||++.+||+|+|++|+||+.++...+..+.-+ .+|++++|+|+...+|+++.|++|
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 221 122222346888999999999999999999999999999888777544 579999999999999999999999
Q ss_pred EEEEe
Q 010777 495 CVLDF 499 (501)
Q Consensus 495 ~v~~~ 499 (501)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 182
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=4.3e-19 Score=156.51 Aligned_cols=267 Identities=20% Similarity=0.374 Sum_probs=187.8
Q ss_pred CccceeEEEECCC----CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CE
Q 010777 152 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TL 226 (501)
Q Consensus 152 H~~~V~~~~~sp~----~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~ 226 (501)
|...-+.|+|+-+ ..+||.||.-|.|||.|+.++. +.+.+.+|...|..+.|.|+. ++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----------------~~~~~~ghG~sINeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----------------CSKNYRGHGGSINEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----------------hccceeccCccchhhhcCCCCCcE
Confidence 6667788888765 3488899999999999987653 234455677889999999964 79
Q ss_pred EEEEeCCCeEEEEECCCce-eEee---cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 227 LATGSYDGQARIWSTNGDL-KCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~~-~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
+++|+.|..||+|+++... +..| .+|.+.|.++.|+++|.+|+||+.|.++++|++...+....++.. +.
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~ 224 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS------IT 224 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh------cc
Confidence 9999999999999987653 3333 579999999999999999999999999999999865544333221 11
Q ss_pred cCCCceEEEecCCCeEEEEE-cCCCccee-eecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeC-CCCce---------
Q 010777 303 WRNNVSFATSSTDNMIYVCK-IGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKY--------- 370 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~-~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~-~~~~~--------- 370 (501)
|.++ ++.+-+. ....-|.. +-.-|..+|.|+.|- |.++++=|-++.|..|.. +-+..
T Consensus 225 ~~~~---------~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 225 YSPN---------KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred cCCC---------CccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 1111 0000000 00000111 123488899999996 689999999999999976 11111
Q ss_pred ----eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEeeC--CCCCeEEEEECCCCC
Q 010777 371 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNG--HREPVYSLAFSPTGE 442 (501)
Q Consensus 371 ----~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~--h~~~v~~l~~spdg~ 442 (501)
+.++......++-+.|+-+-. +.+||.|...|.|.+||++...+. .++.. ....|...+||.||.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 223333444556665544321 126889999999999999876552 12221 235689999999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 010777 443 YLASGSLDKSMHIWSLK 459 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~ 459 (501)
+|+....|++|.-||..
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999864
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.1e-16 Score=154.33 Aligned_cols=270 Identities=13% Similarity=0.214 Sum_probs=171.8
Q ss_pred EEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCc-ee
Q 010777 169 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNGD-LK 246 (501)
Q Consensus 169 ~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~-~~ 246 (501)
++.+.|+.|++|++.+... + ..+..+. .......++++|++++|+.++ .++.|.+|+.... ..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~--------l--~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA--------L--TLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred EEcCCCCCEEEEEECCCCc--------e--eeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce
Confidence 3446799999999953211 1 1111111 123466789999999987764 5788999987532 11
Q ss_pred Eee--cCCCCCEEEEEecCCCCEEEEEec-CCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEc
Q 010777 247 CTL--SKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 323 (501)
Q Consensus 247 ~~~--~~h~~~V~~l~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 323 (501)
... ....+....+.|+|++++|++++. ++.|.+|++.+.....
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~---------------------------------- 116 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV---------------------------------- 116 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC----------------------------------
Confidence 111 112334578999999999887764 7899999885321100
Q ss_pred CCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeee-----cc-cCCCCEEEEEEcCCCCCCCCC
Q 010777 324 GENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHD-----LR-EHSKEIYTIRWSPTGSGTNNP 396 (501)
Q Consensus 324 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~-----~~-~~~~~v~~i~~~p~g~~~~~~ 396 (501)
..+..+. +.....+++++|++++++ +...++.|.+||+.+...+.. .. ........+.|+|++.
T Consensus 117 ---~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~----- 187 (330)
T PRK11028 117 ---APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ----- 187 (330)
T ss_pred ---Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC-----
Confidence 0001111 112345688999998874 555679999999976432211 11 1123456789999886
Q ss_pred CCcEEEEEEe-CCCeEEEEeCCC--C--eEEEEeeCC------CCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCC---
Q 010777 397 NQQLILASAS-FDSTVKLWDVEL--G--KLLYSLNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEG--- 461 (501)
Q Consensus 397 ~~~~~l~sgs-~dg~i~iwd~~~--~--~~~~~~~~h------~~~v~~l~~spdg~~lasgs-~Dg~i~iw~~~~~--- 461 (501)
+++++. .++.|.+|++.. + +.+..+..+ ......+.|+|+|++|+++. .++.|.+|++...
T Consensus 188 ----~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 188 ----YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred ----EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 444444 489999999973 3 233333321 11234689999999998875 4789999998542
Q ss_pred -eeEEEEecCCCEEEEEECCCCCEEEEEEC-CCeEEEEEee
Q 010777 462 -KIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 500 (501)
Q Consensus 462 -~~~~~~~~~~~i~~~~ws~~g~~la~~~~-d~~v~v~~~~ 500 (501)
+++...........++|+|+|++|+++.. +++|.||.+.
T Consensus 264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 23343333334568899999999997765 8899999763
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=4.5e-18 Score=159.04 Aligned_cols=263 Identities=18% Similarity=0.312 Sum_probs=188.9
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEE-e-------cCCCCEEEEEecCCeEEEEeC
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-W-------NKKGDYLLTGSCDKTAIVWDV 282 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~-~-------~~~~~~l~s~s~D~~i~iwd~ 282 (501)
++.-|.|+.|+.....+.+++.+..+.-|+........+......|...- . -.....|+.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~- 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN- 91 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-
Confidence 45567899999887766665554444444543322211111111111100 0 11235789999999999887
Q ss_pred CCcceeEeeeeccCCeEEEecCC-CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEE
Q 010777 283 KTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 361 (501)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~ 361 (501)
+.+...+....|.+.+.+-.|.+ ...+++++.||.|.+|.... ....++.....+|.|++|.|+.+.++-|-. +.+.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~ 169 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHIS 169 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEecC-CeEE
Confidence 56677778888999999999975 45789999999999998542 222334445678999999999887766643 4566
Q ss_pred EEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCC
Q 010777 362 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 441 (501)
Q Consensus 362 iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg 441 (501)
|=-+.....+-..++|.+-|.++.|+|... ++++|+.|-..++||.. |..++.-..|.-+|++++|.|+
T Consensus 170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~---------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSN---------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred EeecccccceeEEeccCcEEEEeecCcccc---------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-
Confidence 656655555566789999999999999875 89999999999999975 7888888889999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 442 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 442 ~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
..++.+|.. ++++ .-+.-+.|+.++||+||..++.|...|.|.+-.
T Consensus 239 ~~~~v~S~n-t~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 239 KDYLLWSYN-TARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred cceeeeeee-eeee----------cCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 666666643 3331 112346799999999999999999999886643
No 185
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=6.3e-18 Score=148.80 Aligned_cols=231 Identities=24% Similarity=0.413 Sum_probs=180.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeC-CCcc
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEE 286 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~-~~~~ 286 (501)
..+|+|.+|++|+..++.+-.+..|.||...+. ...++..|...|+++.|+|..+.|++|+.|+.-++|.. ..++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 467999999999999999999999999987653 45688899999999999999999999999999999987 4444
Q ss_pred eeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 287 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
|. |...+..++..+++|.|+|.++.||+||.-..|.||-+.
T Consensus 90 Wk---------------------------------------ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 90 WK---------------------------------------PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE 130 (361)
T ss_pred ec---------------------------------------cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence 33 233444577889999999999999999999999999775
Q ss_pred CCce--e--eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC------------------CCeEEEE
Q 010777 367 QDKY--V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------------LGKLLYS 424 (501)
Q Consensus 367 ~~~~--~--~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~------------------~~~~~~~ 424 (501)
...- + +.-+.+...|.++.|.|++. +|++||.|+..|+|..- -|.++.+
T Consensus 131 ~ENdWWVsKhikkPirStv~sldWhpnnV---------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 131 QENDWWVSKHIKKPIRSTVTSLDWHPNNV---------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred cccceehhhhhCCccccceeeeeccCCcc---------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 4321 1 11234567899999999875 89999999999999632 1233344
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEe-cCCCEEEEEECCCCCEEEEEEC
Q 010777 425 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYT-GNGGIFEVCWNKEGDKIAACFA 490 (501)
Q Consensus 425 ~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~-~~~~~~-~~~~i~~~~ws~~g~~la~~~~ 490 (501)
+....+.|..+.|+|+|..|+-.+.|.++.+=|..... .+.+.. ..-+..++.|-.+...+++|..
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 44456789999999999999999999999999876553 333332 2345678888777766666654
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=2e-17 Score=143.77 Aligned_cols=271 Identities=21% Similarity=0.381 Sum_probs=193.0
Q ss_pred CCeEEEEECC---CCCEEEEEeC----CCeEEEEECC---CceeE-eecCCCCCEEEEEecCCCC----EEEEEecCCeE
Q 010777 213 KDVTTLDWNG---EGTLLATGSY----DGQARIWSTN---GDLKC-TLSKHKGPIFSLKWNKKGD----YLLTGSCDKTA 277 (501)
Q Consensus 213 ~~V~~~~~s~---~~~~l~sg~~----dg~i~iw~~~---~~~~~-~~~~h~~~V~~l~~~~~~~----~l~s~s~D~~i 277 (501)
.++.++.||. ..-+|+.|+. .+.|.|-.+. +.... .-..|.-|++.+.|.|+.. .|++.+ +-.+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~L 123 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-SDFL 123 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-cCeE
Confidence 4577888883 3456777775 3566665443 22221 1135889999999999863 233333 3489
Q ss_pred EEEeCCCcc--eeE--ee-----eeccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcc---eeeecCCCCceeEEE
Q 010777 278 IVWDVKTEE--WKQ--QF-----EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVK 343 (501)
Q Consensus 278 ~iwd~~~~~--~~~--~~-----~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~v~~v~ 343 (501)
|+|.+...+ ... .+ ..+..|..+++|. +...+.+++-|.+-.+|++..+.. -..+-+|..+|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 999876322 111 11 1234577888885 567888999999999999988643 345678999999999
Q ss_pred EcCCC-CEEEEEeCCCeEEEEeCCCCce---eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC-CeEEEEeCCC
Q 010777 344 WDPTG-SLLASCSDDVTAKIWNMKQDKY---VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVEL 418 (501)
Q Consensus 344 ~~~~~-~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d-g~i~iwd~~~ 418 (501)
|...+ ..||++|.||.+|+||++.... +.+-.....+...++|++... .++|+-..| ..|.|.|++.
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp--------nymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP--------NYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc--------hHHhhhhcCCceEEEEEecC
Confidence 99865 5799999999999999986532 222222245667778876643 366765544 4689999986
Q ss_pred C-eEEEEeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCe------eEEEEecCCCEEEEEECC-CCCEEEEEE
Q 010777 419 G-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGK------IVKTYTGNGGIFEVCWNK-EGDKIAACF 489 (501)
Q Consensus 419 ~-~~~~~~~~h~~~v~~l~~spdg-~~lasgs~Dg~i~iw~~~~~~------~~~~~~~~~~i~~~~ws~-~g~~la~~~ 489 (501)
. ..+..+.+|.+.|+.|+|.|.. ..|+|+|.|..+.|||+..-- .+..+...+.|+.+.|++ .++.+|.|+
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 4 5788999999999999999974 789999999999999997521 233344556799999996 578999998
Q ss_pred CCC
Q 010777 490 ANH 492 (501)
Q Consensus 490 ~d~ 492 (501)
.+.
T Consensus 356 ~kk 358 (364)
T KOG0290|consen 356 GKK 358 (364)
T ss_pred cCe
Confidence 764
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.5e-18 Score=149.96 Aligned_cols=266 Identities=15% Similarity=0.241 Sum_probs=186.0
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecC--CCCEEEEEecCCeEEEEeCCCcceeEeeee--cc-CCe
Q 010777 225 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-GPT 298 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~-~~~ 298 (501)
..++++..+|.|++||... +....+++|...+..++|.. ..+.+++|+.||+|++||++.......+.. +. .+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688889999999999764 56668899999999999977 567899999999999999998765544433 33 234
Q ss_pred EEEecCCC-ceEEEe----cCCCeEEEEEcCCCcc-eeee-cCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-
Q 010777 299 LDVDWRNN-VSFATS----STDNMIYVCKIGENRP-IKTF-AGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDK- 369 (501)
Q Consensus 299 ~~~~~~~~-~~~~~~----~~d~~i~~~~~~~~~~-~~~~-~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~- 369 (501)
.+++...+ ..++.+ ..+..+.+||++..+. +..+ ..|...|++++|+|.. ++|+|||-||-|.|||++...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 55555423 334443 3467899999998765 5544 4799999999999975 689999999999999987542
Q ss_pred --eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC------------CCeEEE
Q 010777 370 --YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPVYSL 435 (501)
Q Consensus 370 --~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~------------~~v~~l 435 (501)
.+.....+...|..+.|...+-. -|.+-++..+..+|++..+.....+.... .-+-..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk--------rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK--------RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc--------eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 22333456778999999877631 36677889999999998877544332110 001111
Q ss_pred EECCCCCEEEEEeC-CCcEEEEeCC---CCee---EEEEecC--CCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 436 AFSPTGEYLASGSL-DKSMHIWSLK---EGKI---VKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 436 ~~spdg~~lasgs~-Dg~i~iw~~~---~~~~---~~~~~~~--~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
....++..++.++. -+...++-+. ++.. +..+.+. ..|.++.|...+..+.+|+.||.|.+|-
T Consensus 273 ~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 273 HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11224455555554 4555555443 2322 2333332 2367889999999999999999999995
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=5.6e-17 Score=160.42 Aligned_cols=257 Identities=20% Similarity=0.292 Sum_probs=186.5
Q ss_pred CeEEEEECCCceeE-eecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCccee--E----eeeeccCCeEEEecCC
Q 010777 234 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK--Q----QFEFHSGPTLDVDWRN 305 (501)
Q Consensus 234 g~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~--~----~~~~~~~~~~~~~~~~ 305 (501)
+.+.||+....... ..-.-..+|++++|+|.. +.++.|+.+|.|.+||++.+... . ....|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899998654222 122345789999999965 56778888999999999876542 1 2235777888888852
Q ss_pred ---CceEEEecCCCeEEEEEcCCCcc-eeee----cC-------CCCceeEEEEcCCC-CEEEEEeCCCeEEEEe---CC
Q 010777 306 ---NVSFATSSTDNMIYVCKIGENRP-IKTF----AG-------HQGEVNCVKWDPTG-SLLASCSDDVTAKIWN---MK 366 (501)
Q Consensus 306 ---~~~~~~~~~d~~i~~~~~~~~~~-~~~~----~~-------h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd---~~ 366 (501)
+..|++++.||.|..|+++.-.. .... .. -...+++++|.+.. ..|+.|+++|.|.--. .+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 25589999999999998764321 1110 11 12357899998865 5688999999887622 22
Q ss_pred CCc-----eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEEeeCCCCCeEEEEECCC
Q 010777 367 QDK-----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 367 ~~~-----~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spd 440 (501)
... .+..+..|.++|+++.++|-+. .++++++ |.+|+||... ...+++.+..+...|++++|||.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--------k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP--------KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCcc--------ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 221 1335567889999999999775 2444554 9999999988 67788888888888999999998
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCee--EEEEe-cCCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 441 GE-YLASGSLDKSMHIWSLKEGKI--VKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 441 g~-~lasgs~Dg~i~iw~~~~~~~--~~~~~-~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.. .++++..||.|.|||+..... +.+.. +....+.+.|++.|+.||.|..+|++++|++
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 74 667888899999999975432 22221 2334678889999999999999999999987
No 189
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=160.76 Aligned_cols=290 Identities=22% Similarity=0.352 Sum_probs=211.8
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 224 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~ 224 (501)
..|.+|.+.|+.+.|+..|..|+|||.|..|.+||+..+....... .+|...|....|-| +.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~----------------SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE----------------SGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc----------------cccccchhhhhccCCCCC
Confidence 4688999999999999999999999999999999998765322211 22333444444544 44
Q ss_pred CEEEEEeCCCeEEEEECC--Cce--eEeecCCCCCEEEEEecCCCC-EEEEEecCCeEEEEeCCCcceeEeeeec--cCC
Q 010777 225 TLLATGSYDGQARIWSTN--GDL--KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGP 297 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~--~~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~--~~~ 297 (501)
+.+++++.||.+++=.+. +.. ...+..|.++|.-++.-|... -|++++.|+.+.-.|++.......+.+. ..+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 779999999999987643 221 345678999999999988764 5899999999999999876544433321 111
Q ss_pred ------eEEEecCCCceEEEecCCCeEEEEEcCCC------cceeeecCCC------CceeEEEEcCCCCEEEEEeCCCe
Q 010777 298 ------TLDVDWRNNVSFATSSTDNMIYVCKIGEN------RPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVT 359 (501)
Q Consensus 298 ------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~------~~~~~~~~h~------~~v~~v~~~~~~~~l~s~s~Dg~ 359 (501)
.+.++..+...|++++.|-.+++|+.+.- .++..|..|. -.|+|++|+.++.-+.+...|-.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 12344556678999999999999987531 2344444332 35899999988877777788888
Q ss_pred EEEEeCCC--C----------ceeee-cccCCC--CEEEEEE-cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 010777 360 AKIWNMKQ--D----------KYVHD-LREHSK--EIYTIRW-SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 423 (501)
Q Consensus 360 i~iwd~~~--~----------~~~~~-~~~~~~--~v~~i~~-~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 423 (501)
|.++.-.. + .++.. +++|.. .|..+-| .|.. .++++||.-|.|.||+-.+++.+.
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecCccceEEEEecchhHHHH
Confidence 99984221 1 12222 455533 3444433 2332 388999999999999999999998
Q ss_pred EeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010777 424 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 461 (501)
Q Consensus 424 ~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~ 461 (501)
-+.+....|+||.=+|--..||+.|-|..||||...+.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 88887779999999999999999999999999987543
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=1.5e-15 Score=136.48 Aligned_cols=239 Identities=18% Similarity=0.310 Sum_probs=170.7
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
...++.+.|+.+...|..|+.||. ++|....... ..+.......|--+-||.+--.+++...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-----------------~~~~~~~~~~IvEmLFSSSLvaiV~~~q 66 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK-----------------CFSKDTEGVSIVEMLFSSSLVAIVSIKQ 66 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH-----------------hhcccCCCeEEEEeecccceeEEEecCC
Confidence 345777789999999999999984 5676543211 0011111223555567765444444433
Q ss_pred CCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE
Q 010777 233 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 233 dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
-+.+++.+.... ..|.+ ....+|.+++++.+ +|+++=.+ .|.|||+++++...++...
T Consensus 67 pr~Lkv~~~Kk~~~ICe~-~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~----------------- 125 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEI-FFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETT----------------- 125 (391)
T ss_pred CceEEEEEcccCceEEEE-ecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhcc-----------------
Confidence 356888876543 33333 24568899998764 57776654 4999999998876654321
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEE--EeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCC
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS--CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 389 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s--~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~ 389 (501)
..+...+.++.+++.+.++|- ....|.|.|||..+-+.+..+..|.+++-+++|+|+
T Consensus 126 ---------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 126 ---------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred ---------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC
Confidence 112233445555555556653 234688999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEeeCCC--CCeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010777 390 GSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHR--EPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 390 g~~~~~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~ 460 (501)
|. +|||+|..|+ ||+|.+.+|+.+++++--. ..|.+|+|||++++|++.|..++|+||.+.+
T Consensus 185 G~---------llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 GT---------LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CC---------EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 97 8999999997 6999999999999986433 3588999999999999999999999998764
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=5.9e-16 Score=139.11 Aligned_cols=233 Identities=23% Similarity=0.358 Sum_probs=161.2
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCC--CEEEEEecCCCCEEEEEecC--CeEEEEeCCCcce
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG--PIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEW 287 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~D--~~i~iwd~~~~~~ 287 (501)
...+..+.|+.+...|..|+.||. +++..+....+ +..-.. .|..+-|+.. .++..+.+ +.+++.+.+.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~-~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC-FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHh-hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence 345777789999999999999884 66665432221 111112 2333445433 33333333 3366666554432
Q ss_pred eEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010777 288 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~ 367 (501)
+..+. ...+|.+|.++. +.|+.+-.+ .|.|||++.
T Consensus 81 ICe~~------------------------------------------fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~ 115 (391)
T KOG2110|consen 81 ICEIF------------------------------------------FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKD 115 (391)
T ss_pred EEEEe------------------------------------------cCCceEEEEEcc--ceEEEEEcc-cEEEEeccc
Confidence 22111 134577777753 445555554 499999999
Q ss_pred CceeeecccC-CCCEEEEEEcCCCCCCCCCCCcEEEEE-Ee-CCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEE
Q 010777 368 DKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILAS-AS-FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 444 (501)
Q Consensus 368 ~~~~~~~~~~-~~~v~~i~~~p~g~~~~~~~~~~~l~s-gs-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l 444 (501)
.++++++..- ..+-.-++++|+... .+||. ++ ..|.|.|||+.+-+.+..+.+|.+++-+|+|+|+|.+|
T Consensus 116 MklLhTI~t~~~n~~gl~AlS~n~~n-------~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~ll 188 (391)
T KOG2110|consen 116 MKLLHTIETTPPNPKGLCALSPNNAN-------CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLL 188 (391)
T ss_pred ceeehhhhccCCCccceEeeccCCCC-------ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEE
Confidence 9999887654 233233455554321 14443 22 36899999999999999999999999999999999999
Q ss_pred EEEeCCCc-EEEEeCCCCeeEEEEec---CCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 445 ASGSLDKS-MHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 445 asgs~Dg~-i~iw~~~~~~~~~~~~~---~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
||+|..|+ |+||.+.+|+.+..|.- ...|++++|+|++++|++.+..++|+||-+.
T Consensus 189 ATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 99999996 89999999999888753 2358999999999999999999999999764
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.8e-17 Score=151.69 Aligned_cols=205 Identities=17% Similarity=0.269 Sum_probs=146.9
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC--CC
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 224 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~ 224 (501)
..|.||++-|+|+.|+.+|.+|+|||.|-.+.|||...-+ .+.....+|...|.++.|-| ..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----------------llhsI~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----------------LLHSISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----------------eeeeeecccccceeEEeeeccCCC
Confidence 3588999999999999999999999999999999975322 11122346788899999988 56
Q ss_pred CEEEEEeCCCeEEEEECCC-----------ceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEe-e
Q 010777 225 TLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQ-F 291 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~-~ 291 (501)
+.++||..|..|+++|+.. .....+..|+..|.-|+-.|++ +.|.+++.||+|+.+|++....... .
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 7899999999999999863 1223456799999999999988 7899999999999999986321110 0
Q ss_pred ee-------c----cCCeEEEecCCCceEEEecCCCeEEEEEcCCCc------------------ceeeec-CCC-----
Q 010777 292 EF-------H----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR------------------PIKTFA-GHQ----- 336 (501)
Q Consensus 292 ~~-------~----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------------------~~~~~~-~h~----- 336 (501)
.. + ....+.+.......|+.++.+-..++||.+... ++..|. +|.
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 00 0 112344556677889999999999999843210 122222 332
Q ss_pred ---Cc---eeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010777 337 ---GE---VNCVKWDPTGSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 337 ---~~---v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~ 367 (501)
.. ++-+.|+|+|.-|+..-..-.|.++|+..
T Consensus 268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 12 34578999997665554445788888753
No 193
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=4.8e-18 Score=153.32 Aligned_cols=159 Identities=26% Similarity=0.529 Sum_probs=136.5
Q ss_pred eecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-------ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEE
Q 010777 331 TFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 402 (501)
Q Consensus 331 ~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l 402 (501)
.+.||+++|..++|+|-. ..|||||+|.+|.||.+-.+ .++..+.+|...|..++|+|... ++|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--------NVL 147 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--------NVL 147 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--------hhH
Confidence 467999999999999954 67899999999999987543 34667889999999999999764 478
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC--EEEEEECC
Q 010777 403 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--IFEVCWNK 480 (501)
Q Consensus 403 ~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~--i~~~~ws~ 480 (501)
++++.|++|.+||+.+|+.+.++. |..-|+++.|+.||.+|+|.+.|..|+|||.++|+++..-..+.+ ...+.|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999999988 999999999999999999999999999999999999877644433 46677999
Q ss_pred CCCEEEEEEC---CCeEEEEE
Q 010777 481 EGDKIAACFA---NHTVCVLD 498 (501)
Q Consensus 481 ~g~~la~~~~---d~~v~v~~ 498 (501)
+|+.+-+|+. +..+.+||
T Consensus 227 ~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred cCceeeeccccccccceeccC
Confidence 9996666643 56778876
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=2.2e-18 Score=158.66 Aligned_cols=227 Identities=21% Similarity=0.341 Sum_probs=189.4
Q ss_pred EEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCC
Q 010777 257 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ 336 (501)
Q Consensus 257 ~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~ 336 (501)
+.+.++.+|.+|+.|+.-|.|..+|..++.+...+.. ...+.++.|..+..|++....+.+++||-.... +.-+.. .
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE-lHClk~-~ 209 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE-LHCLKR-H 209 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-Eeehhh-c
Confidence 6789999999999999999999999999987766543 345667888777777777888899999864322 222222 3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 010777 337 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 416 (501)
Q Consensus 337 ~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~ 416 (501)
..|..+.|-|..-+|++++..|.++.-|+.+|+.+..++...+.+..++-+|-.. ++-+|...|+|.+|..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---------Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---------VIHLGHSNGTVSLWSP 280 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---------eEEEcCCCceEEecCC
Confidence 4688899999999999999999999999999999999988888888888888765 7889999999999999
Q ss_pred CCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEE
Q 010777 417 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 496 (501)
Q Consensus 417 ~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v 496 (501)
....++..+-.|.++|.+|++.++|+|+||.|.|..|+|||++....+.++....+...+++|..| .||++. ...|.+
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~-G~~v~i 358 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSY-GDHVQI 358 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeec-CCeeee
Confidence 999999999999999999999999999999999999999999988777777666667888888877 444444 345777
Q ss_pred E
Q 010777 497 L 497 (501)
Q Consensus 497 ~ 497 (501)
|
T Consensus 359 w 359 (545)
T KOG1272|consen 359 W 359 (545)
T ss_pred e
Confidence 7
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=7.8e-17 Score=160.32 Aligned_cols=213 Identities=17% Similarity=0.227 Sum_probs=143.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEe-cCCeEEEE--eCCCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVW--DVKTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~i~iw--d~~~~ 285 (501)
...+.+.+|||||++|+.++.+ ..|++|++.+.....+....+....++|+|+|++|+.++ .+|.+.|| |+.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence 4568999999999999988754 379999987543323332233345689999999888764 57766555 44332
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe-CCCeEEEEe
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWN 364 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~i~iwd 364 (501)
. +..+..+...+..+.|+|||+.|+.++ .+|...||+
T Consensus 283 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 283 T------------------------------------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred C------------------------------------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 2 112333455677899999999776555 578888887
Q ss_pred CCCCc-eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCE
Q 010777 365 MKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 443 (501)
Q Consensus 365 ~~~~~-~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~ 443 (501)
+.... ....+ .+.. +...|+|+|. .|+..+.++ +.+||+.+++.......+ ....++|+|+|++
T Consensus 321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~---------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~ 385 (429)
T PRK01742 321 MSASGGGASLV-GGRG--YSAQISADGK---------TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIM 385 (429)
T ss_pred EECCCCCeEEe-cCCC--CCccCCCCCC---------EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCE
Confidence 64322 12222 2322 4567888886 455555554 556999888754322222 2456889999999
Q ss_pred EEEEeCCCcEEEEeC--CCCeeEEEEec-CCCEEEEEECCC
Q 010777 444 LASGSLDKSMHIWSL--KEGKIVKTYTG-NGGIFEVCWNKE 481 (501)
Q Consensus 444 lasgs~Dg~i~iw~~--~~~~~~~~~~~-~~~i~~~~ws~~ 481 (501)
|+.++.++.+.+|.+ .+|+..+.+.. .+.+..++|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999999998888875 35777777765 445888999985
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=6.6e-17 Score=160.83 Aligned_cols=211 Identities=20% Similarity=0.232 Sum_probs=148.6
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecC---CeEEEEeCCCcceeEeeeeccCCeEEEecCCCceE
Q 010777 233 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 309 (501)
Q Consensus 233 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
+..|++||..+.....+..|...+...+|+|+|++|+.++.+ ..|++||+.++....
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------------- 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------------- 242 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------
Confidence 468999998887666777888899999999999999887654 368889887654211
Q ss_pred EEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe-CCCeEEEE--eCCCCceeeecccCCCCEEEEEE
Q 010777 310 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIW--NMKQDKYVHDLREHSKEIYTIRW 386 (501)
Q Consensus 310 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~ 386 (501)
+..+.+| ...++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+....|
T Consensus 243 -------------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 243 -------------------VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSW 299 (429)
T ss_pred -------------------EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEE
Confidence 1112233 23589999999887764 68876665 655554 3445556667788999
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 465 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~ 465 (501)
+|+|. .+++++..+|..+||++... .....+ ++.. ..++|+|||++|+.++.++ +.+||+.+++...
T Consensus 300 SpDG~--------~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 300 SPDGQ--------SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred CCCCC--------EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence 99986 24445556788888876432 222222 3433 4678999999999888765 5669999887543
Q ss_pred EEecCCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 466 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 466 ~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.... .....++|+|+|++|++++.++.+.+|.+
T Consensus 368 lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 368 LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 2222 23457889999999999999988887764
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.8e-15 Score=128.38 Aligned_cols=277 Identities=13% Similarity=0.203 Sum_probs=194.6
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 155 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 234 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 234 (501)
.|.+-+++|.+++|+.|..+|.|.+..+..-........+...+. ....|..+|+.++|.. .+|++|+. |
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv-------~eqahdgpiy~~~f~d--~~Lls~gd-G 81 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIV-------PEQAHDGPIYYLAFHD--DFLLSGGD-G 81 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCccee-------eccccCCCeeeeeeeh--hheeeccC-c
Confidence 477788999999999999999999999865332211112221111 1145678999999983 46777664 9
Q ss_pred eEEEEECCCce-------e--EeecCCC-----CCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEE
Q 010777 235 QARIWSTNGDL-------K--CTLSKHK-----GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 300 (501)
Q Consensus 235 ~i~iw~~~~~~-------~--~~~~~h~-----~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (501)
.|+-|...... . ....-|. -.|.++-..|..+-++.++.|+.+..||+++++....+..|+.-+.+
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 99988643211 0 1122233 24788888998888888889999999999999999999999999998
Q ss_pred EecC-CCceEEEecCCCeEEEEEcCCCcceeeecC---------CCC-ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 010777 301 VDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAG---------HQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 369 (501)
Q Consensus 301 ~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---------h~~-~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~ 369 (501)
+.-+ .+..+.+++.||++++||.++.+.++.+.. |-+ .|-+++. +..++++|+ ...+.+|.++...
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence 8874 567889999999999999999988876642 222 3556655 456777665 4579999999888
Q ss_pred eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCC-CEEEEEe
Q 010777 370 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGS 448 (501)
Q Consensus 370 ~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~lasgs 448 (501)
+...|. ...++..+.|..+ .+++++..+.|.-|.+. |..-..+.......++..|+-.- ++|-.++
T Consensus 239 ~t~vfp-ipa~v~~v~F~~d-----------~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 239 STCVFP-IPARVHLVDFVDD-----------CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAG 305 (325)
T ss_pred ceEEEe-cccceeEeeeecc-----------eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecc
Confidence 776553 3345666777554 35667777788888764 44444444444456666665443 5566677
Q ss_pred CCCcEEEEe
Q 010777 449 LDKSMHIWS 457 (501)
Q Consensus 449 ~Dg~i~iw~ 457 (501)
..+.+.|+.
T Consensus 306 ~s~~~~i~~ 314 (325)
T KOG0649|consen 306 FSNKLHILK 314 (325)
T ss_pred cceeeeeee
Confidence 777777763
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=2.2e-16 Score=137.32 Aligned_cols=229 Identities=27% Similarity=0.486 Sum_probs=163.7
Q ss_pred CCccceeEEEECCCCC-----EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-CC
Q 010777 151 GHTSEVCACAWSPAGS-----LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG 224 (501)
Q Consensus 151 ~H~~~V~~~~~sp~~~-----~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~ 224 (501)
.|..+++.+-|.|+.. +|||.| ..+|+|.+.........+ . .+.. ........++++..|+- +-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~----~--~L~~--~kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ----S--VLNN--NKNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh----h--hhcc--CcccccCCcccccccccCCc
Confidence 4888999999999863 566554 579999986321110000 0 0000 11223457899999986 77
Q ss_pred CEEEEEeCCCeEEEEECCCc----eeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeee-ec--cC
Q 010777 225 TLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFE-FH--SG 296 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~--~~ 296 (501)
+++.+.+-|-+..||+++.. .+..+..|..+|+.++|...+ +.|++.+.||++|++|++..+-...+. .. ..
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 89999999999999998753 466788999999999999866 578999999999999998765333222 11 23
Q ss_pred CeEEEecCCC--ceEEEe-cCCCeEEEEEcCCC-cceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-
Q 010777 297 PTLDVDWRNN--VSFATS-STDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY- 370 (501)
Q Consensus 297 ~~~~~~~~~~--~~~~~~-~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~- 370 (501)
+.+-+.|... ..+++- .+...|.+.|++.+ .++..+.+|.+.|++++|.|.. ..|+||++|..+.|||+.+.-.
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 4556677432 233433 44567888888764 5788899999999999999975 6799999999999999875322
Q ss_pred -----eeecccCCCCEEEEEEcCCC
Q 010777 371 -----VHDLREHSKEIYTIRWSPTG 390 (501)
Q Consensus 371 -----~~~~~~~~~~v~~i~~~p~g 390 (501)
+.... ..+.|..+.|+|.-
T Consensus 324 ~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 324 NGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred CCCCchhhhh-ccceeeeeeecccC
Confidence 11122 45788999998754
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=3.7e-15 Score=143.80 Aligned_cols=265 Identities=15% Similarity=0.229 Sum_probs=163.8
Q ss_pred ccceeEEEECCCCCEEEEEE-CCCcEEEEecCC-CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 010777 153 TSEVCACAWSPAGSLLASGS-GDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 230 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs-~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 230 (501)
.+....++|+|++++|+.++ .++.|.+|++.. +. +. ...... .......++|+|++++|+++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~---------l~--~~~~~~-----~~~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA---------LT--FAAESP-----LPGSPTHISTDHQGRFLFSA 97 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc---------eE--Eeeeec-----CCCCceEEEECCCCCEEEEE
Confidence 35577899999999887665 588999999862 21 10 111110 12245689999999998887
Q ss_pred eC-CCeEEEEECCCc-----eeEeecCCCCCEEEEEecCCCCEEEEE-ecCCeEEEEeCCCcceeEeeeeccCCeEEEec
Q 010777 231 SY-DGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 303 (501)
Q Consensus 231 ~~-dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 303 (501)
+. ++.|.+|+++.. ....+. +.....+++++|++++++++ ..++.|.+||+.+........
T Consensus 98 ~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~----------- 165 (330)
T PRK11028 98 SYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE----------- 165 (330)
T ss_pred EcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-----------
Confidence 65 889999987521 112222 22345778899999988654 456999999987532110000
Q ss_pred CCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CCeEEEEeCCC--Cc--eeeecccCC
Q 010777 304 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQ--DK--YVHDLREHS 378 (501)
Q Consensus 304 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~i~iwd~~~--~~--~~~~~~~~~ 378 (501)
...+.... ......++|+|+|++++++.. +++|.+|++.. +. .+..+....
T Consensus 166 ----------------------~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 166 ----------------------PAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred ----------------------CCceecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 00000001 122457899999999877765 89999999873 22 233332111
Q ss_pred ------CCEEEEEEcCCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCCCeEEEEeeCC---CCCeEEEEECCCCCEEEEEe
Q 010777 379 ------KEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGS 448 (501)
Q Consensus 379 ------~~v~~i~~~p~g~~~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~spdg~~lasgs 448 (501)
.....+.++|++. +|+++ ..++.|.+|++........+.++ ......++|+|+|++|++++
T Consensus 222 ~~~~~~~~~~~i~~~pdg~---------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGR---------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CcCCCCccceeEEECCCCC---------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 1223577888875 44444 45789999998643322222222 12345789999999998877
Q ss_pred C-CCcEEEEeCC--CCee--EEEEecCCCEEEEEE
Q 010777 449 L-DKSMHIWSLK--EGKI--VKTYTGNGGIFEVCW 478 (501)
Q Consensus 449 ~-Dg~i~iw~~~--~~~~--~~~~~~~~~i~~~~w 478 (501)
. +++|.+|++. +|.+ +..+.......++++
T Consensus 293 ~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 293 QKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred ccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 5 8999999874 4543 344433334455544
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=2.7e-15 Score=132.73 Aligned_cols=304 Identities=18% Similarity=0.268 Sum_probs=193.3
Q ss_pred EEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE-eCCCeE
Q 010777 158 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-SYDGQA 236 (501)
Q Consensus 158 ~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg-~~dg~i 236 (501)
-++|||+|+++|+.+.- .+.|=|..+-.. ..+..+ -..|.-+.|..|..+++.+ +.++.|
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-----------~qlf~c-------ldki~yieW~ads~~ilC~~yk~~~v 73 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-----------HQLFLC-------LDKIVYIEWKADSCHILCVAYKDPKV 73 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-----------HHHHHH-------HHHhhheeeeccceeeeeeeeccceE
Confidence 36799999999999754 555555443210 000000 1346678899888877765 567899
Q ss_pred EEEECCC-ceeEeecCCCCCEEEEEecCCCCE-EEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE---
Q 010777 237 RIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT--- 311 (501)
Q Consensus 237 ~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 311 (501)
.+|++.. +-.+.+.....++.+++|+|+|+. |.+..-|-.|.+|.+.+......- .....+..+.|..+..|++
T Consensus 74 qvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 74 QVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred EEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeee
Confidence 9999754 556678878889999999999955 556667999999999876532110 0001112222222222111
Q ss_pred ----------------------------------ecCCCeEEEEEcCCCcceeeecCCC-CceeEEEEcCCCCEEEEEeC
Q 010777 312 ----------------------------------SSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSD 356 (501)
Q Consensus 312 ----------------------------------~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~s~ 356 (501)
+.++..+.+|+.--.-.+..+ |. -.+..+.|+|-+++++.|+.
T Consensus 153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred cccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEEEeccccceEEeecc
Confidence 223445666764333222222 33 35788999999999999999
Q ss_pred CCeEEEEeCCCCceeeec------------------------------------------------------------c-
Q 010777 357 DVTAKIWNMKQDKYVHDL------------------------------------------------------------R- 375 (501)
Q Consensus 357 Dg~i~iwd~~~~~~~~~~------------------------------------------------------------~- 375 (501)
|+.+||.+--+.+...++ +
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 999998653222211110 0
Q ss_pred -----cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEe
Q 010777 376 -----EHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 448 (501)
Q Consensus 376 -----~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs 448 (501)
.....+..++|+++. .++++-.. -+.+-+||+++.+....+. ...+|....|+|....|+.+.
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds---------~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDS---------TYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred CCCCCCcccccceeeecCCc---------eEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc
Confidence 000112233444443 25665432 3568999998766544333 456899999999999998888
Q ss_pred CCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCe
Q 010777 449 LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 493 (501)
Q Consensus 449 ~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~ 493 (501)
...++++|....-..+..-...-.|.+++|+-+|..++.++.|..
T Consensus 381 g~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 381 GKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 888899998876454444322235899999999999999999874
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=3.6e-15 Score=131.61 Aligned_cols=235 Identities=14% Similarity=0.227 Sum_probs=163.7
Q ss_pred CEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccC--CeEEEecCCCceEEEecCC------CeEEEEEcCCC
Q 010777 255 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTLDVDWRNNVSFATSSTD------NMIYVCKIGEN 326 (501)
Q Consensus 255 ~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~ 326 (501)
...+++|+.+...++.|..+| .+||+.+.-+....-..+.+ .+..+-|+.+.....++.+ +.+.+||--..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999988888777555 79998764222111111221 2223345555555555443 57999997777
Q ss_pred cceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEE
Q 010777 327 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 405 (501)
Q Consensus 327 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sg 405 (501)
+++.++. ...+|.+|.+.++ .|+.. ..+.|.||... .-+.++.+.....+---++..|... ..++..-|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~------k~~LafPg 155 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN------KSLLAFPG 155 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC------ceEEEcCC
Confidence 7777765 4678999999875 34443 35689999876 3344443332221111122223221 12333446
Q ss_pred eCCCeEEEEeCCCCeE--EEEeeCCCCCeEEEEECCCCCEEEEEeCCCc-EEEEeCCCCeeEEEEec---CCCEEEEEEC
Q 010777 406 SFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTG---NGGIFEVCWN 479 (501)
Q Consensus 406 s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~-i~iw~~~~~~~~~~~~~---~~~i~~~~ws 479 (501)
-.-|.|+|-|+...+. ...+.+|...|.|++.+-+|.+|||+|..|+ |+|||..+|+++..+.- ...|++++||
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 6779999999986655 4778999999999999999999999999996 89999999999888743 4469999999
Q ss_pred CCCCEEEEEECCCeEEEEEee
Q 010777 480 KEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 480 ~~g~~la~~~~d~~v~v~~~~ 500 (501)
|++.+||+++.-|+|+||.++
T Consensus 236 p~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCccEEEEEcCCCeEEEEEee
Confidence 999999999999999999886
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.5e-16 Score=156.52 Aligned_cols=255 Identities=19% Similarity=0.268 Sum_probs=170.5
Q ss_pred cceeEEEECC--CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 154 SEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 154 ~~V~~~~~sp--~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
..|+.+.+-. |..+|++|+.||.||||+-...... .+.-+.....+.+......+.-.-++|.....+|+++|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~-----~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK-----KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccC-----CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC
Confidence 5688887754 3568999999999999975432110 00011111111111111112224568888777777777
Q ss_pred CCCeEEEEECCCceeEe--ecCCCCCEEEEEec-CCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCce
Q 010777 232 YDGQARIWSTNGDLKCT--LSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 308 (501)
Q Consensus 232 ~dg~i~iw~~~~~~~~~--~~~h~~~V~~l~~~-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (501)
.-..|+|||...+.+.. ..+....|+++.-+ +.|+.+++|..||+|++||.+....
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------- 1243 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------- 1243 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---------------------
Confidence 78999999998765432 23344567777543 3468999999999999999875321
Q ss_pred EEEecCCCeEEEEEcCCCcceeeecCCCCc--eeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceee--ecccC---CCC
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVH--DLREH---SKE 380 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~--~~~~~---~~~ 380 (501)
...+..++.|+.. |..+.+.+.|- .|++|+.||.|++||++...... ++..| .+.
T Consensus 1244 -----------------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1244 -----------------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred -----------------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 1123445567665 88888887664 49999999999999998742211 12222 224
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC-------CCCCeEEEEECCCCCEEEEEeCCCcE
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HREPVYSLAFSPTGEYLASGSLDKSM 453 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~spdg~~lasgs~Dg~i 453 (501)
.+++..+++.. ++|+|+. +.|+||++. |+.+..++. ..+.+.|++|||..-+||+|+.|.+|
T Consensus 1307 lTal~VH~hap---------iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1307 LTALTVHEHAP---------IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred ceeeeeccCCC---------eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 67777776654 7899988 999999986 443333322 23568999999999999999999999
Q ss_pred EEEeCCCCe
Q 010777 454 HIWSLKEGK 462 (501)
Q Consensus 454 ~iw~~~~~~ 462 (501)
.||...++.
T Consensus 1376 ~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1376 SIYSCEKPR 1384 (1387)
T ss_pred EEeecCCcC
Confidence 999877653
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.5e-15 Score=138.87 Aligned_cols=195 Identities=22% Similarity=0.304 Sum_probs=145.6
Q ss_pred EEEecCC-CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc-
Q 010777 299 LDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE- 376 (501)
Q Consensus 299 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~- 376 (501)
..+.+.. +..+++++.||++++|+.....++.....|.++|.+++|+|||++|++-+.| ..+||+..++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 4455544 4778999999999999988888888888999999999999999999999999 999999999866655432
Q ss_pred -CCCCEEEEEEcCCCCCCCCCCCcEEEEE-EeCCCeEEEEeCCCCe-----EEEEeeCCCCCeEEEEECCCCCEEEEEeC
Q 010777 377 -HSKEIYTIRWSPTGSGTNNPNQQLILAS-ASFDSTVKLWDVELGK-----LLYSLNGHREPVYSLAFSPTGEYLASGSL 449 (501)
Q Consensus 377 -~~~~v~~i~~~p~g~~~~~~~~~~~l~s-gs~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~spdg~~lasgs~ 449 (501)
.......++|+.++.. ..+++++ ...-+.|+.|++.... ...+...-...|++++.|++|+++|.|+.
T Consensus 227 ~k~~~~~~cRF~~d~~~-----~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQ-----ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ccchhhhhceecccCCC-----ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 2234456677766532 1123333 3344556666643211 11111122347999999999999999999
Q ss_pred CCcEEEEeCCCCeeEEEEec-C-CCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 450 DKSMHIWSLKEGKIVKTYTG-N-GGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 450 Dg~i~iw~~~~~~~~~~~~~-~-~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
||.|.|++..+-+.++..+. | .-|+.+.|+||.++++.-+.+.+..|.-+
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 99999999998887776654 3 35899999999999999888888877654
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=2.2e-15 Score=132.91 Aligned_cols=237 Identities=20% Similarity=0.308 Sum_probs=172.6
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
..+|+|.||++|++.+|.+-....|.||.......- ........|...|+.++|+|..+.|++|+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w--------------~~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW--------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc--------------eeceehhhhCcceeEEeecCCCCceeEccC
Confidence 468999999999999999999999999986543210 111123456788999999999999999999
Q ss_pred CCeEEEEEC-CC---ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCce
Q 010777 233 DGQARIWST-NG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 308 (501)
Q Consensus 233 dg~i~iw~~-~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (501)
|...+||.. .+ .....+..|+.+++++.|+|.++.|++||.-+.|.||-++...
T Consensus 76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------------------- 133 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------------------- 133 (361)
T ss_pred CCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc----------------------
Confidence 999999987 33 2334667899999999999999999999999999998654321
Q ss_pred EEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------Cce
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------------------DKY 370 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~------------------~~~ 370 (501)
-|-+. +.+ -..+.+.|++++|+|++-+++.|+.|+..|++..-- +.+
T Consensus 134 -----------dWWVs--Khi--kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l 198 (361)
T KOG1523|consen 134 -----------DWWVS--KHI--KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL 198 (361)
T ss_pred -----------ceehh--hhh--CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence 01110 011 123467899999999999999999999999996421 122
Q ss_pred eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEeeCCCCCeEEEEECCCCCEEEEEeC
Q 010777 371 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSL 449 (501)
Q Consensus 371 ~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spdg~~lasgs~ 449 (501)
..++....+.+..+.|+|.|. .|+-.++|..+.+-|..... .+..+..-.-|..++.|-.+. .++.++.
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~---------~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~ 268 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGN---------RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGY 268 (361)
T ss_pred HHhhccCCCceeeeEeCCCCC---------EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCC
Confidence 233334567899999999997 78999999999999987664 233333223566777665432 2333444
Q ss_pred C
Q 010777 450 D 450 (501)
Q Consensus 450 D 450 (501)
|
T Consensus 269 ~ 269 (361)
T KOG1523|consen 269 D 269 (361)
T ss_pred C
Confidence 4
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.1e-14 Score=130.52 Aligned_cols=276 Identities=24% Similarity=0.400 Sum_probs=177.7
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CEEEEEeC
Q 010777 154 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSY 232 (501)
Q Consensus 154 ~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~sg~~ 232 (501)
-.+..++|++--..+|++..|-+|++|+-... .. ..++. .....|+|++|-|-+ .-|+.|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~p----------t~Lks------~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CP----------TKLKS------VSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CC----------ceecc------hhhcceeEEEeccCCcceeeeeec
Confidence 34678899986667889999999999985441 11 11111 124579999999965 45555554
Q ss_pred CCeEEEEECCCce---------------eEeecCCCCCEEEEEecCCCCEEEEEec-CCeEEEEeCCCcceeEeeeeccC
Q 010777 233 DGQARIWSTNGDL---------------KCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSG 296 (501)
Q Consensus 233 dg~i~iw~~~~~~---------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~~~~~~~~ 296 (501)
+-|.||...... +..-.+| .+|+++.|+++|..+++++- |..|+|||+.++..+.
T Consensus 162 -~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p------- 232 (445)
T KOG2139|consen 162 -AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP------- 232 (445)
T ss_pred -ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-------
Confidence 668999754211 1122344 68999999999999998876 6789999998775322
Q ss_pred CeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc
Q 010777 297 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 376 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 376 (501)
+.. -.-+.+.-+.|||||.+|++++-|+..++|.......-.....
T Consensus 233 --------------------------------L~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l 278 (445)
T KOG2139|consen 233 --------------------------------LIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL 278 (445)
T ss_pred --------------------------------ccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence 111 1234577799999999999999999999996443221111222
Q ss_pred CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC----C--------e---EEEEe------eC---CCCCe
Q 010777 377 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G--------K---LLYSL------NG---HREPV 432 (501)
Q Consensus 377 ~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~----~--------~---~~~~~------~~---h~~~v 432 (501)
..+.|.+.+|+|.|+ .+|.+.+..- ++|.+.. + + .+..+ .+ .-+++
T Consensus 279 gsgrvqtacWspcGs--------fLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgea 348 (445)
T KOG2139|consen 279 GSGRVQTACWSPCGS--------FLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEA 348 (445)
T ss_pred cCCceeeeeecCCCC--------EEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcc
Confidence 345899999999997 3555555433 3333210 0 0 11111 11 13578
Q ss_pred EEEEECCCCCEEEEEeCC--------CcEEEEeCCCCeeEEEE----ecCCCEEEEEECC---CCCEEEEEECCCeEEEE
Q 010777 433 YSLAFSPTGEYLASGSLD--------KSMHIWSLKEGKIVKTY----TGNGGIFEVCWNK---EGDKIAACFANHTVCVL 497 (501)
Q Consensus 433 ~~l~~spdg~~lasgs~D--------g~i~iw~~~~~~~~~~~----~~~~~i~~~~ws~---~g~~la~~~~d~~v~v~ 497 (501)
.+++|.|.|.|||+--.. ..|.+|+.+.--.+... ......--++|+| +|..|..|-..|.+.-|
T Consensus 349 q~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 349 QCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred ceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEee
Confidence 899999999999985433 34677776654332222 1112234556666 56788888888888877
Q ss_pred Ee
Q 010777 498 DF 499 (501)
Q Consensus 498 ~~ 499 (501)
.+
T Consensus 429 pl 430 (445)
T KOG2139|consen 429 PL 430 (445)
T ss_pred ee
Confidence 65
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=2.6e-14 Score=137.77 Aligned_cols=305 Identities=15% Similarity=0.164 Sum_probs=188.5
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCe-EEEEECCCCCEEEEEeCCCeEEEEECCCc-e
Q 010777 168 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTNGD-L 245 (501)
Q Consensus 168 l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~ 245 (501)
+++-..++.|.+.|..+.+.. ..+.. ...+ ..+.|++||+++++++.||.|.++|+... .
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~-------------~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVV-------------ARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEE-------------EEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EEEecCCCEEEEEECCCCeEE-------------EEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 345667899999998765321 12211 1123 34679999999999999999999998654 4
Q ss_pred eEeecCCCCCEEEEEecCCCCEEEEEe-cCCeEEEEeCCCcceeEeeeeccC-------CeEEEe-cCCCceEEEe-cCC
Q 010777 246 KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSG-------PTLDVD-WRNNVSFATS-STD 315 (501)
Q Consensus 246 ~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~-~~d 315 (501)
..++..- ....+++++++|++++++. ..+.+.++|.++.+.++.+..... .+..+- ......|+.+ -..
T Consensus 71 v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 71 VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred EEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 4455443 3458899999999988664 689999999999988887754321 233333 3344446555 445
Q ss_pred CeEEEEEcCCCcceee-ecCCCCceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeeecc----cCCCCEEEE-----
Q 010777 316 NMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI----- 384 (501)
Q Consensus 316 ~~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~----~~~~~v~~i----- 384 (501)
+.|.+.+....+++.. ............|+|++++++.+ ..+..|-++|..+++.+..+. .|..+...+
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~ 229 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF 229 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence 7888888776554432 22223456678999999987554 556789999999887765442 233333322
Q ss_pred --EEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEE----eCCCcEEEEeC
Q 010777 385 --RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG----SLDKSMHIWSL 458 (501)
Q Consensus 385 --~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasg----s~Dg~i~iw~~ 458 (501)
-|...+.. . ...+.-..+.+.+||..+.+.+.++.....+ .-+.-||++++|.+. ...++|.++|.
T Consensus 230 g~vw~~~~~~------~-~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 230 GPVWATSGLG------Y-FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEEEEBSS------S-SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred ceEEeecccc------c-eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 12211111 0 1112222346678999999999999877666 778889999999887 44589999999
Q ss_pred CCCeeEEEEecCC--CEEEEEECCCCCEEEEEEC--CCeEEEEEe
Q 010777 459 KEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFA--NHTVCVLDF 499 (501)
Q Consensus 459 ~~~~~~~~~~~~~--~i~~~~ws~~g~~la~~~~--d~~v~v~~~ 499 (501)
.+.+.+.++.... .+..+.|+++|+++..+.. ++.|.|||-
T Consensus 302 ~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 302 KTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp CGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 9998888876433 4999999999996665533 447999985
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=5.3e-16 Score=145.55 Aligned_cols=195 Identities=21% Similarity=0.350 Sum_probs=142.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCceeEee-----cCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeecc
Q 010777 222 GEGTLLATGSYDGQARIWSTNGDLKCTL-----SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 295 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~~~~~~~-----~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 295 (501)
+.+--++.|-..|.|.+.+........+ .-.+..|++++|-|.+ ..|+.+..+|.+.+||..... ...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t 256 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GAT 256 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCC
Confidence 5667788888889999888643221111 1134789999999865 467778889999999862110 000
Q ss_pred CCeEEEecCCCceEEEecCCCeEEEEEcC-CCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec
Q 010777 296 GPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 374 (501)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 374 (501)
.+. ...+.....|. |..|.-. ...|+..+.--.+.|+..+|+|||++||+.+.||.+||||+.+..++..+
T Consensus 257 ~p~-~~~~k~~~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m 328 (636)
T KOG2394|consen 257 APS-YQALKDGDQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM 328 (636)
T ss_pred CCc-ccccCCCCeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH
Confidence 000 00011111121 1122111 11344444434568999999999999999999999999999999888888
Q ss_pred ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECC
Q 010777 375 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 439 (501)
Q Consensus 375 ~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 439 (501)
+..-+...|++|+|||. +|++|+.|.-|.||.+..++.+..-.+|+.+|+.|+|.|
T Consensus 329 kSYFGGLLCvcWSPDGK---------yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 329 KSYFGGLLCVCWSPDGK---------YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HhhccceEEEEEcCCcc---------EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 88888999999999997 899999999999999999999999999999999999987
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.2e-15 Score=134.29 Aligned_cols=279 Identities=17% Similarity=0.310 Sum_probs=193.5
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce------eEee--cCCCCCEEEEEecCCCCEEEEEecCCeEEEE
Q 010777 209 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 280 (501)
Q Consensus 209 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~------~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iw 280 (501)
.+|.+.|.++.||.++++|++|+.|..+++|.++... ...+ ..|.+.|++|+|...+..+++|..+++|.+.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 3567889999999999999999999999999875311 1122 2466899999999999999999999999999
Q ss_pred eCCCcceeEeeeec--cCCeEEEecC-CCceEEEecCCCeEEEEEcCCCc-ceeeec--CCCCceeEEEEcCCC-CEEEE
Q 010777 281 DVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR-PIKTFA--GHQGEVNCVKWDPTG-SLLAS 353 (501)
Q Consensus 281 d~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~--~h~~~v~~v~~~~~~-~~l~s 353 (501)
|+.+.+.+-.+... .+.|..++.. .+..|++.+.++.|.+|+.+... ++..+. ........+-|+|.. .+|++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99988766554432 3466666553 36678999999999999998755 433322 233456788999976 46788
Q ss_pred EeCCCeEEEEeCCCCce-ee------ecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEe
Q 010777 354 CSDDVTAKIWNMKQDKY-VH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSL 425 (501)
Q Consensus 354 ~s~Dg~i~iwd~~~~~~-~~------~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~ 425 (501)
.+..+-+.+||.+.... +. .+......-.++.|+|.|.. |.+--....-.+||+-+.++ ++.+
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q---------~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ---------FMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe---------ehhhhccCCCEEeeeecccceeEec
Confidence 88899999999875421 11 11111222367889998862 22222222334556554332 2333
Q ss_pred eCCC-------CCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-----C-----e-------------eEEEEecCCC-EE
Q 010777 426 NGHR-------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-----G-----K-------------IVKTYTGNGG-IF 474 (501)
Q Consensus 426 ~~h~-------~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~-----~-----~-------------~~~~~~~~~~-i~ 474 (501)
. |. ..|.+++|--|-. +++||.+=-|+||.+.. | . .+..+.++.. ++
T Consensus 284 D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 284 D-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred c-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 2 22 2466778876644 89999999999998742 1 1 1223344443 57
Q ss_pred EEEECCCCCEEEEEECCCeEEEEE
Q 010777 475 EVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 475 ~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
-|.|+|-...|++.+....+.+|.
T Consensus 362 QVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 362 QVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ceeecCCcceEeccchhhheeccc
Confidence 899999999999998888999983
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.8e-16 Score=141.61 Aligned_cols=196 Identities=24% Similarity=0.327 Sum_probs=141.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEE-CCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 216 TTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 216 ~~~~~s~~~~~l~sg~~dg~i~iw~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
.+++|+++|..+++|+.||.+|||+ ...........|.+.|.+|.|+|+|+.|++-+.| ..+||+++++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 7899999999999999999999999 4444555677899999999999999999999999 999999998843332210
Q ss_pred cCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCc
Q 010777 295 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-----SLLASCSDDVTAKIWNMKQDK 369 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-----~~l~s~s~Dg~i~iwd~~~~~ 369 (501)
+..+ .....+.|+.|+ .+++....-+.|+.|++....
T Consensus 226 --------~~k~------------------------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 226 --------FSKD------------------------------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred --------cccc------------------------------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 0000 011223333333 112222233344444432211
Q ss_pred -----eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe-eCCCCCeEEEEECCCCCE
Q 010777 370 -----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEY 443 (501)
Q Consensus 370 -----~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg~~ 443 (501)
...........|.+++.+++|. ++|.|+.||.|-|++..+.+.++.+ ..|...|+.|.|+||.++
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGk---------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGK---------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCc---------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 1112222345789999999997 8999999999999999887776654 579999999999999999
Q ss_pred EEEEeCCCcEEEEeCCC
Q 010777 444 LASGSLDKSMHIWSLKE 460 (501)
Q Consensus 444 lasgs~Dg~i~iw~~~~ 460 (501)
+++-+.|.++.|..+.-
T Consensus 339 ~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 339 LASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccccCCceeEEEEee
Confidence 99999999988887653
No 210
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=5.3e-16 Score=148.00 Aligned_cols=235 Identities=17% Similarity=0.310 Sum_probs=171.0
Q ss_pred CCCCCEEEE--EeCCCeEEEEECCC--ce----eEeecCCCCCEEEEEecC-CCCEEEEEecCCeEEEEeCCCcceeEee
Q 010777 221 NGEGTLLAT--GSYDGQARIWSTNG--DL----KCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQF 291 (501)
Q Consensus 221 s~~~~~l~s--g~~dg~i~iw~~~~--~~----~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 291 (501)
+.+..+++. .+.-|.|-||+++. .+ ...+ .....|+.+.|.| +.++|+.++.||.|++|-+..+.....
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~- 665 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN- 665 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc-
Confidence 334445444 35568999999753 21 1122 1345799999999 557899999999999998876532211
Q ss_pred eeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce
Q 010777 292 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKY 370 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~i~iwd~~~~~~ 370 (501)
...|-..+.+|...|+++.|||- ...|++++.|.+|++||+.+.+.
T Consensus 666 ---------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~ 712 (1012)
T KOG1445|consen 666 ---------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL 712 (1012)
T ss_pred ---------------------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh
Confidence 12345567889999999999996 46789999999999999999999
Q ss_pred eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEeeCCC-CCeEEEEECCCCCEEEEEe
Q 010777 371 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHR-EPVYSLAFSPTGEYLASGS 448 (501)
Q Consensus 371 ~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~-~~v~~l~~spdg~~lasgs 448 (501)
...+.+|...|..++|+|+|. .+|+.+.||+|++|+.+++. .+++-++-. ..--.|.|.-+|+++++.|
T Consensus 713 ~~~l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 713 YSRLVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred hheeccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 999999999999999999997 79999999999999988764 344433221 1224578889999999888
Q ss_pred CCC----cEEEEeCCCCe--eEEE--EecCCCEEEEEECCCCC-EEEEEECCCeEEEEEe
Q 010777 449 LDK----SMHIWSLKEGK--IVKT--YTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDF 499 (501)
Q Consensus 449 ~Dg----~i~iw~~~~~~--~~~~--~~~~~~i~~~~ws~~g~-~la~~~~d~~v~v~~~ 499 (501)
.|. .|.+|+..+-. .+.+ +.....+.-..+.+|.+ .+++|-.|..|..|.+
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 774 68899876532 2222 22222233334566665 6668888999998876
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=6.7e-17 Score=158.58 Aligned_cols=233 Identities=21% Similarity=0.390 Sum_probs=178.2
Q ss_pred eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC-CCceEEEecCCCeEEEEEcCCC
Q 010777 248 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGEN 326 (501)
Q Consensus 248 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~ 326 (501)
.+.+|.++|+|+.|...|.++++|+.|..++||...++.+.....+|.+.+.++... ++..+++++.|..|++|.+..+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 567899999999999999999999999999999999999999999999999888765 5566788899999999999999
Q ss_pred cceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee---ccc-CCCCEEEEEEcCCCCCCCCCCCcEEE
Q 010777 327 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD---LRE-HSKEIYTIRWSPTGSGTNNPNQQLIL 402 (501)
Q Consensus 327 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~-~~~~v~~i~~~p~g~~~~~~~~~~~l 402 (501)
.|+..+.||++.|++++|+|-- +.+.||++++||.+-.-.+.. +.. ....+-++.|...+. -+
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~---------~f 331 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD---------RF 331 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc---------cc
Confidence 9999999999999999999954 889999999999872111111 000 112334444444443 46
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECC
Q 010777 403 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNK 480 (501)
Q Consensus 403 ~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~ 480 (501)
+||+.|+.-+.|...... .+...+.-+.++.+- .+.+++-.+..+++|++.+|.++....++. .++.+.++|
T Consensus 332 ~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred ccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 789999888888654211 111112222222222 466777778899999999999888777654 488999999
Q ss_pred CCCEEE-EEECCCeEEEEEe
Q 010777 481 EGDKIA-ACFANHTVCVLDF 499 (501)
Q Consensus 481 ~g~~la-~~~~d~~v~v~~~ 499 (501)
-...++ +++.||...|||+
T Consensus 406 fn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred CCcHhhhhccCCCceEeeec
Confidence 877665 6788999999996
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=1.3e-14 Score=148.40 Aligned_cols=304 Identities=18% Similarity=0.257 Sum_probs=195.7
Q ss_pred CCceEEccCCccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC
Q 010777 143 NSDVTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 221 (501)
Q Consensus 143 ~~~~~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 221 (501)
...++.|..|...|..++.++.. .+++|||.||+||+|++..-.... +.... .-.+......+.++.+.
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS------~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----GSARS------ELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----ceeee------eEEEeccCCceEEEEec
Confidence 34577888899999999988864 899999999999999976432110 00000 01122235678999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc--ee------EeecCC-CCCEEEE-EecC--CCCEEEEEecCCeEEEEeCCCcceeE
Q 010777 222 GEGTLLATGSYDGQARIWSTNGD--LK------CTLSKH-KGPIFSL-KWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ 289 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~~--~~------~~~~~h-~~~V~~l-~~~~--~~~~l~s~s~D~~i~iwd~~~~~~~~ 289 (501)
+.+..+|.|+.||.|++.+++.. .. .....+ .+.|..+ +|.. ....|+.+..-+.|..||++......
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999999999999999987641 11 111112 2333333 3322 22467788888999999998765333
Q ss_pred --eeeeccCCeEEEecCC-CceEEEecCCCeEEEEEcCCCcceeeec-CCCCceeEEEEcCCCC---EE-EEEe-CCCeE
Q 010777 290 --QFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGS---LL-ASCS-DDVTA 360 (501)
Q Consensus 290 --~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~---~l-~s~s-~Dg~i 360 (501)
......|.+.++...+ ..-++.|...|.+.+||++=+.++..+. ++..+|..+..+|..+ .. ++++ ..+.|
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 3344456666665543 3367888899999999999888877654 4456777777776543 44 4444 57789
Q ss_pred EEEeCCCCceeeecccCCCCEEEEEE-cCCC-------C---CCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE-------
Q 010777 361 KIWNMKQDKYVHDLREHSKEIYTIRW-SPTG-------S---GTNNPNQQLILASASFDSTVKLWDVELGKLL------- 422 (501)
Q Consensus 361 ~iwd~~~~~~~~~~~~~~~~v~~i~~-~p~g-------~---~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~------- 422 (501)
.+|++.++.+...+....+ +..+.+ .|.. - ...-+...-++.+|+.|..||.||.......
T Consensus 1268 s~wn~~~g~~~~vl~~s~~-~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~ 1346 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDG-APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGP 1346 (1431)
T ss_pred eeeecccCcceEEEEcCCC-CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCc
Confidence 9999998866555443211 111111 1111 0 0001122237889999999999996432110
Q ss_pred ----------------------EE---------------------------eeCCCCCeEEEEECCCC-CEEEEEeCCCc
Q 010777 423 ----------------------YS---------------------------LNGHREPVYSLAFSPTG-EYLASGSLDKS 452 (501)
Q Consensus 423 ----------------------~~---------------------------~~~h~~~v~~l~~spdg-~~lasgs~Dg~ 452 (501)
.. -..|..+|+++++-... .+|++++.||.
T Consensus 1347 s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~ 1426 (1431)
T KOG1240|consen 1347 STSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGV 1426 (1431)
T ss_pred cccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCe
Confidence 00 01477889998876554 58899999999
Q ss_pred EEEEe
Q 010777 453 MHIWS 457 (501)
Q Consensus 453 i~iw~ 457 (501)
|+||.
T Consensus 1427 IkiWk 1431 (1431)
T KOG1240|consen 1427 IKIWK 1431 (1431)
T ss_pred eeecC
Confidence 99993
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.7e-16 Score=146.23 Aligned_cols=266 Identities=18% Similarity=0.225 Sum_probs=202.1
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 155 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 234 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 234 (501)
+-..+.|+.+|++|+.|+.-|.|-.+|+.++.... -.. -...|.++.|-...++||.+- ..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------Ei~-------v~Etv~Dv~~LHneq~~AVAQ-K~ 191 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------EIN-------VMETVRDVTFLHNEQFFAVAQ-KK 191 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeee-----------eee-------hhhhhhhhhhhcchHHHHhhh-hc
Confidence 44678899999999999999999999987753210 000 123578888888888887765 46
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC-CceEEEec
Q 010777 235 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS 313 (501)
Q Consensus 235 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 313 (501)
.++|||-.|...+.+..| ..|..|.|-|-.-.|++++..|.++.-|+.+|+.+..+....+.+..+.-.+ +..+-++.
T Consensus 192 y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 192 YVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred eEEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence 899999988877777766 5688999999887888999999999999999999888887777665555433 44566788
Q ss_pred CCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCC
Q 010777 314 TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 393 (501)
Q Consensus 314 ~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~ 393 (501)
..|+|.+|.-....|+..+-.|.++|.+|++.++|+++||.+.|..++|||++.-..++++.. ..+...+++|..|
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--- 346 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--- 346 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---
Confidence 999999999998889888889999999999999999999999999999999998877666655 3455666776665
Q ss_pred CCCCCcEEEEEEeCCCeEEEEe-CCCCe--EEEEeeCC--CCCeEEEEECCCCCEEEEEeCCCc
Q 010777 394 NNPNQQLILASASFDSTVKLWD-VELGK--LLYSLNGH--REPVYSLAFSPTGEYLASGSLDKS 452 (501)
Q Consensus 394 ~~~~~~~~l~sgs~dg~i~iwd-~~~~~--~~~~~~~h--~~~v~~l~~spdg~~lasgs~Dg~ 452 (501)
+|| .+....|.||. .-.+. .-...-.| .++|..|.|.|-...|-.|-.-|.
T Consensus 347 -------lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 347 -------LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred -------cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 444 55566899995 22211 11111112 358999999997766666655553
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=9.5e-15 Score=132.30 Aligned_cols=275 Identities=16% Similarity=0.248 Sum_probs=190.9
Q ss_pred ccceeEEEECCCCC--EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 010777 153 TSEVCACAWSPAGS--LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 230 (501)
Q Consensus 153 ~~~V~~~~~sp~~~--~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 230 (501)
...|..++|.-+++ .|...+.|..+.+..+......... ..+... ....++|..++... ..|++|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-------~~~~~~----~l~~~~I~gl~~~d--g~Litc 121 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-------DDAKTV----SLGTKSIKGLKLAD--GTLITC 121 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcccccc-------cccccc----ccccccccchhhcC--CEEEEE
Confidence 35677788876653 5555557777777766554322110 000111 11234455554432 367888
Q ss_pred eCCCeEEEEECC-----CceeEeecCCCCCEEEEEecCCCCEEE-EEecC--CeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 231 SYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD--KTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 231 ~~dg~i~iw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
-.+|.+.+|... ......+..+ ..+..+.-++...+++ +|+.. ..+++||+... .+.|....-+...+
T Consensus 122 ~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L- 197 (412)
T KOG3881|consen 122 VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRL- 197 (412)
T ss_pred ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccc-
Confidence 999999999876 3333344433 4567777777766655 58887 78999999876 44443322111000
Q ss_pred cCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC--CCEEEEEeCCCeEEEEeCCCC-ceeeecccCCC
Q 010777 303 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD-KYVHDLREHSK 379 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~ 379 (501)
+-.+.+| ++.+.|-+. ...||+++.-+.+|+||.+.+ +++..+.....
T Consensus 198 ------------~LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~ 248 (412)
T KOG3881|consen 198 ------------GLRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN 248 (412)
T ss_pred ------------cceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence 1122333 445677666 778999999999999999865 45777777778
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE-eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
++.++...|.+. ++.+|..-|.+..||++.++.+.. +++..+.|.+|..+|.+++||++|-|..|+|+|+
T Consensus 249 ~is~~~l~p~gn---------~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 249 PISSTGLTPSGN---------FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cceeeeecCCCc---------EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 889998888886 788999999999999999998877 8899999999999999999999999999999999
Q ss_pred CCCeeEEEEecCCCEEEEEECCCC
Q 010777 459 KEGKIVKTYTGNGGIFEVCWNKEG 482 (501)
Q Consensus 459 ~~~~~~~~~~~~~~i~~~~ws~~g 482 (501)
.+.+++........++.+.+.++-
T Consensus 320 ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 320 KTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred ccchhhhhhhhhccccEEEecCCc
Confidence 998776655555566777776543
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=4.9e-13 Score=118.26 Aligned_cols=234 Identities=23% Similarity=0.351 Sum_probs=158.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEecCCCCEE-EEEecC------CeEEEEeCCCc
Q 010777 214 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYL-LTGSCD------KTAIVWDVKTE 285 (501)
Q Consensus 214 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l-~s~s~D------~~i~iwd~~~~ 285 (501)
...+++|+.|...++.|..+| .+||+.+.-.. .....+.+.+.-+..--..++| +.|+.. ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 356699999998888877665 78998764211 1111122222111111123444 344443 57999995555
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcC-CCcceeeecCCC--CceeEEEEcCCCCEEEE-EeCCCeEE
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ--GEVNCVKWDPTGSLLAS-CSDDVTAK 361 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s-~s~Dg~i~ 361 (501)
.++.++.+ ..+|.++.++.+...+. ..+.|++|... ..+.+..+..-. ....+++-+....+||. |-.-|.|.
T Consensus 86 ~~i~el~f-~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 86 RCIIELSF-NSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cEEEEEEe-ccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 55555554 34677777766654443 35688999887 344444443222 12434433333344443 44568999
Q ss_pred EEeCCCCce--eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEeeC--CCCCeEEEE
Q 010777 362 IWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNG--HREPVYSLA 436 (501)
Q Consensus 362 iwd~~~~~~--~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~l~ 436 (501)
|-|+...+. ...+.+|...|.+++.+.+|. ++||+|..|+ |||||..+|.++.+++- ....|++|+
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIACVALNLQGT---------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 999876655 366789999999999999997 8999999998 79999999999999863 235699999
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCC
Q 010777 437 FSPTGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 437 ~spdg~~lasgs~Dg~i~iw~~~~ 460 (501)
|||++.+||++|.-|+|+||.++.
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999875
No 216
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.4e-15 Score=133.79 Aligned_cols=185 Identities=21% Similarity=0.378 Sum_probs=144.0
Q ss_pred ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeee--cccCC-CCE
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHS-KEI 381 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~--~~~~~-~~v 381 (501)
..++++-..|.|++++..+++.+..|.++...++.+.|.. ....+.+|+.||+||+||++....... ..+++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3467778889999999999999999999999999999976 456799999999999999987654433 33333 334
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEe----CCCeEEEEeCCCCeE-EEE-eeCCCCCeEEEEECCCC-CEEEEEeCCCcEE
Q 010777 382 YTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKL-LYS-LNGHREPVYSLAFSPTG-EYLASGSLDKSMH 454 (501)
Q Consensus 382 ~~i~~~p~g~~~~~~~~~~~l~sgs----~dg~i~iwd~~~~~~-~~~-~~~h~~~v~~l~~spdg-~~lasgs~Dg~i~ 454 (501)
.+++-...+ .++++|. .+-.|.+||++..+. +.. ...|...|++|.|+|.. ++|+|||-||.|.
T Consensus 121 ~~ld~nck~---------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNCKK---------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccCcC---------CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 444433222 2566665 366799999998766 444 35699999999999975 7899999999999
Q ss_pred EEeCCCC----eeEEEEecCCCEEEEEECCCC-CEEEEEECCCeEEEEEee
Q 010777 455 IWSLKEG----KIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 500 (501)
Q Consensus 455 iw~~~~~----~~~~~~~~~~~i~~~~ws~~g-~~la~~~~d~~v~v~~~~ 500 (501)
+||++.- .++.++.....|-.+.|..++ +.|.+-+..++..+|++.
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999753 355666666679999999988 677788889999999874
No 217
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.3e-16 Score=142.64 Aligned_cols=283 Identities=21% Similarity=0.348 Sum_probs=211.8
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-c-eeEeecCCCCCEEEEEecCCC--CEEEEEecCCeEEEEeC
Q 010777 207 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D-LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDV 282 (501)
Q Consensus 207 ~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~-~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~i~iwd~ 282 (501)
....|.+.|..+.|+..|..|+||+.|..|.+|+... . ......+|...|..-+|-|.. ..+++++.||.+++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 3456788899999999999999999999999999643 2 333456899999999998854 57999999999998765
Q ss_pred CCccee---EeeeeccCCeEEEec--CCCceEEEecCCCeEEEEEcCCCcceeeec---CCCC---ceeEEEEcCCCC-E
Q 010777 283 KTEEWK---QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQG---EVNCVKWDPTGS-L 350 (501)
Q Consensus 283 ~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~---~v~~v~~~~~~~-~ 350 (501)
....++ ..+..|.+++..+.. .....|.+++.|+.++-+|++...+...+. .+.. ....++..|-.. .
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 433222 345567777765554 456778999999999999998877654443 2233 467888898775 7
Q ss_pred EEEEeCCCeEEEEeCCCCc------eeeecc------cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 351 LASCSDDVTAKIWNMKQDK------YVHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 351 l~s~s~Dg~i~iwd~~~~~------~~~~~~------~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
+++|+.|..+|+||.+.-. .+..+- ...-.|++++|+.++.. +| +...|-.|+++.-.-
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--------lL-aSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--------LL-ASYNDEDIYLFNKSM 367 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--------ee-eeecccceEEecccc
Confidence 9999999999999975321 122221 22345889999877652 34 455677789985332
Q ss_pred --C----------eEEE-EeeCCCC--CeEEEE-ECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEECCC
Q 010777 419 --G----------KLLY-SLNGHRE--PVYSLA-FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKE 481 (501)
Q Consensus 419 --~----------~~~~-~~~~h~~--~v~~l~-~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~ 481 (501)
| ..+. .++||.. .|..+- |-|...|+++||.-|.|.||+-.++++++.+.+.. .|+++.=+|-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence 2 1222 3788864 355664 57889999999999999999999999998887743 5788988998
Q ss_pred CCEEEEEECCCeEEEEE
Q 010777 482 GDKIAACFANHTVCVLD 498 (501)
Q Consensus 482 g~~la~~~~d~~v~v~~ 498 (501)
--.||+++.+.-|+||.
T Consensus 448 ~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 448 LPVLASSGIDHDVKIWT 464 (559)
T ss_pred CchhhccCCccceeeec
Confidence 88999999999999994
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=9.5e-15 Score=130.92 Aligned_cols=240 Identities=19% Similarity=0.379 Sum_probs=159.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecC-CCCCEEEEEecCCCCE-EEEEecCCeEEEEeCCCcceeEe
Q 010777 213 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQ 290 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~-h~~~V~~l~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~~ 290 (501)
..+..++|++.-..|+++..|-.|++|+......+.++. ....|++++|.|.+.. |+.|+ -+-|.+|.....-.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln--- 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLN--- 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccc---
Confidence 457889999988889999999999999987655554432 3457999999997754 55555 46689997532110
Q ss_pred eeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc
Q 010777 291 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDK 369 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~i~iwd~~~~~ 369 (501)
...+ .+ .... ....+....|| .+|++++|.+||..+++++. |..|.|||..++.
T Consensus 175 ----~~r~--------~~---~~s~---------~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 175 ----ANRN--------IR---MMST---------HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred ----cccc--------cc---cccc---------cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 0000 00 0000 00112233455 68999999999999999886 5679999999887
Q ss_pred eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEE-E
Q 010777 370 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLAS-G 447 (501)
Q Consensus 370 ~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~las-g 447 (501)
.+.-.....+.+.-+.|||++. +|..+..|+..++|+.... ....-.. ..+.|....|+|+|++|.- .
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd---------~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGD---------VLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cccccccCCCceeeEEEcCCCC---------EEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEE
Confidence 6654444556788999999997 7888899999999965432 2222222 3358999999999987654 3
Q ss_pred eCCCcEEEEeCC--C--C--------e---eEEE------Eec----CCCEEEEEECCCCCEEEEEECCCe
Q 010777 448 SLDKSMHIWSLK--E--G--------K---IVKT------YTG----NGGIFEVCWNKEGDKIAACFANHT 493 (501)
Q Consensus 448 s~Dg~i~iw~~~--~--~--------~---~~~~------~~~----~~~i~~~~ws~~g~~la~~~~d~~ 493 (501)
+..- .+|.+. . + + ++.. ..+ -+.+-+++|.|.|.+||+-+..+.
T Consensus 300 sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 300 SGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 3333 333321 1 1 0 1111 112 245678999999999999877654
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=1.2e-14 Score=127.35 Aligned_cols=150 Identities=21% Similarity=0.513 Sum_probs=110.7
Q ss_pred eEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-Cceeeeccc-CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC
Q 010777 340 NCVKWDPTGSLLASCSD----------DVTAKIWNMKQ-DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASF 407 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~----------Dg~i~iwd~~~-~~~~~~~~~-~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~ 407 (501)
..+.|+|.|.+|+.-.. -+...||.++. ...+..+.. ..++|..++|+|+|. +..+++|..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-------~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-------EFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-------EEEEEEccC
Confidence 35789999987654332 12355555532 233333332 345799999999986 234556667
Q ss_pred CCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCE
Q 010777 408 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK 484 (501)
Q Consensus 408 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D---g~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~ 484 (501)
++.|.|||++ ++.+..+. ...++.|.|||+|++||+|+.+ |.|.+||+.+.+.+..+... .+..++|+|+|++
T Consensus 82 ~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRY 157 (194)
T ss_pred CcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCE
Confidence 8899999997 67777764 4578999999999999998754 67999999998888776544 5789999999999
Q ss_pred EEEEEC------CCeEEEEEee
Q 010777 485 IAACFA------NHTVCVLDFR 500 (501)
Q Consensus 485 la~~~~------d~~v~v~~~~ 500 (501)
|+++.. |..+.||++.
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEeccceeccccEEEEEec
Confidence 998864 6778999863
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.7e-14 Score=138.68 Aligned_cols=212 Identities=13% Similarity=0.136 Sum_probs=145.8
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEec---CCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEE
Q 010777 234 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 310 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
..|.+||..+.....+..|...+.+.+|+|+|+.|+..+. +..|.+||+.++...
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------------------- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------------------- 239 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------
Confidence 4788888887777777788889999999999998887653 457888888765421
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCCCe--EEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
.+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.. ..+..+........|+
T Consensus 240 --------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s 298 (435)
T PRK05137 240 --------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS 298 (435)
T ss_pred --------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc
Confidence 1122334556789999998765 5566665 67778877654 3455555556778999
Q ss_pred CCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCC
Q 010777 388 PTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEG 461 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D---g~i~iw~~~~~ 461 (501)
|+|. .|+..+ .+| .|.+||+..+.. ..+..+...+....|||||++|+..+.+ ..|.+|++.++
T Consensus 299 pDG~---------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 299 PDGS---------QIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCC---------EEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 9986 333333 333 688888876544 3343344556778999999999876643 36888998655
Q ss_pred eeEEEEecCCCEEEEEECCCCCEEEEEECC------CeEEEEEe
Q 010777 462 KIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF 499 (501)
Q Consensus 462 ~~~~~~~~~~~i~~~~ws~~g~~la~~~~d------~~v~v~~~ 499 (501)
.. ..+.....+..++|+|||+.|+....+ ..|.++++
T Consensus 369 ~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 369 GE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 43 333333346788999999998876543 24666665
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=5e-14 Score=140.57 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=142.9
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecC---CeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEE
Q 010777 234 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 310 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
..|.+||..+.....+..+...+.+.+|+|+|++|+..+.+ ..|.+||+.++....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------- 242 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------- 242 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---------------------
Confidence 46889998877666677788889999999999998877643 358888876654211
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
+..+.+...+++|+|||+.|+ +.+.+| .|.+||+.++... .+..+.......+|+
T Consensus 243 ---------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s 300 (433)
T PRK04922 243 ---------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA 300 (433)
T ss_pred ---------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC
Confidence 111222334689999998765 555555 5999999877643 344454455678999
Q ss_pred CCCCCCCCCCCcEEEEEEeCCCe--EEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEeCCCCe
Q 010777 388 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 462 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg---~i~iw~~~~~~ 462 (501)
|+|. .++++...+|. |.++++.+++.. .+..+......++|||||++|+..+.++ .|.+|++.+++
T Consensus 301 pDG~--------~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 301 PDGK--------SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 9986 23333334454 666777666532 2222233445789999999998765443 69999998887
Q ss_pred eEEEEecCCCEEEEEECCCCCEEEEEECC---CeEEEEEe
Q 010777 463 IVKTYTGNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 499 (501)
Q Consensus 463 ~~~~~~~~~~i~~~~ws~~g~~la~~~~d---~~v~v~~~ 499 (501)
.. .+........++|+|||++|+..+.+ ..|.++++
T Consensus 372 ~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 372 VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 54 33333345578999999988877653 34666654
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.7e-13 Score=136.13 Aligned_cols=216 Identities=14% Similarity=0.181 Sum_probs=139.8
Q ss_pred CCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEE-ecCC--eEEEEeCCCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~i~iwd~~~~ 285 (501)
...+.+.+|||||+.|+..+. +..+++|+..+.....+....+.+..++|+|+|++|+.. +.++ .|.+||+.++
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 346889999999999886543 457889998765444443344445578999999988754 3344 4667777654
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCC-CeEEEE-
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIW- 363 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-g~i~iw- 363 (501)
... .+..+...+....|+|||+.|+..+.+ +...||
T Consensus 278 ~~~------------------------------------------~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 278 QIR------------------------------------------QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CEE------------------------------------------EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 321 111222345678999999988777654 444444
Q ss_pred -eCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEeeCCCCCeEEEEECCC
Q 010777 364 -NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 364 -d~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 440 (501)
++.++.. ..+...........|+|+|. .+++++..+ ..|.+||+.++... .+... .......|+||
T Consensus 316 ~d~~~g~~-~~lt~~~~~~~~~~~SpDG~--------~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpD 384 (429)
T PRK03629 316 VNINGGAP-QRITWEGSQNQDADVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPN 384 (429)
T ss_pred EECCCCCe-EEeecCCCCccCEEECCCCC--------EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCC
Confidence 6665543 33333344456788999986 233333333 45888999877643 33321 22356789999
Q ss_pred CCEEEEEeCCCc---EEEEeCCCCeeEEEEec-CCCEEEEEECCC
Q 010777 441 GEYLASGSLDKS---MHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 481 (501)
Q Consensus 441 g~~lasgs~Dg~---i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~ 481 (501)
|++|+.++.++. +.++++. |.....+.. .+.+..++|+|-
T Consensus 385 G~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 385 GTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 999999888764 6777774 554455544 456888999983
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-15 Score=141.49 Aligned_cols=164 Identities=23% Similarity=0.378 Sum_probs=129.8
Q ss_pred eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEee-eeccCCeEEEecC---CCceEEEecCCCeEEEE
Q 010777 246 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWR---NNVSFATSSTDNMIYVC 321 (501)
Q Consensus 246 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~ 321 (501)
...+.||++-|.+|.|+.+|.+|++||.|-.+.|||+-..+....+ ..|...+.++.|. ++..++++..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567899999999999999999999999999999998766655544 5788889998884 56788999999999999
Q ss_pred EcCC----------CcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-------eeecc---cCCCC
Q 010777 322 KIGE----------NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-------VHDLR---EHSKE 380 (501)
Q Consensus 322 ~~~~----------~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~-------~~~~~---~~~~~ 380 (501)
++.. ..++..+..|...|..++--|++ +.|.++++||+|+-+|++.... ...+. ..--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9873 33455667899999999999999 6789999999999999985311 11111 11123
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 417 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 417 (501)
..++..+|... ++||.|+.|-..++||.+
T Consensus 203 lk~ltisp~rp--------~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 203 LKCLTISPSRP--------YYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeecCCCC--------ceEEecCCCchhhhhhhh
Confidence 46677777643 589999999999999964
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.3e-14 Score=132.77 Aligned_cols=274 Identities=16% Similarity=0.267 Sum_probs=190.6
Q ss_pred cCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCceeEeecCCCC--CEEEEEecCCCCEEEEEecCCeEEEEeCCCcc
Q 010777 210 EKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNGDLKCTLSKHKG--PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~ 286 (501)
.++..-+.|..+|||+|+ ++|.+-..|++||+..-. ..|..|.. .|.-.-++.+-.-++--..|++|-+..--...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 345567889999999985 567788999999986532 23445543 23333333333333444456666554321111
Q ss_pred eeEeeeeccCCeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010777 287 WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 365 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~ 365 (501)
....+ ...-.++.++ ..+.+..++....|+-+++..+.-+..|....+.+++|..++-..+|++|+.+|.|.+||.
T Consensus 128 y~~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 128 YRTRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeeec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 00000 0011223332 2344555555667888999999888888877899999999999999999999999999999
Q ss_pred CCCceeeecc------cCCC-----CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee-CCCCCeE
Q 010777 366 KQDKYVHDLR------EHSK-----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVY 433 (501)
Q Consensus 366 ~~~~~~~~~~------~~~~-----~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~ 433 (501)
+....+..+. .|.+ .|+++.|+.+| +-++.|..+|.|.|||++..+++..-. +..-+|.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCc---------eeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 8876655443 2322 38999998876 368999999999999999988876543 2346899
Q ss_pred EEEECCCC--CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 434 SLAFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 434 ~l~~spdg--~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
.+.|.+.+ ..|+|. ....++||+-.+|+....+.....+..+|+-|++-.+.+|-.+..+.-|
T Consensus 276 ~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 99998764 445443 3468999999999998888877779999999999888888777665433
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.1e-13 Score=136.23 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=144.5
Q ss_pred CCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEE-EEecCCe--EEEEeCCCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVWDVKTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~--i~iwd~~~~ 285 (501)
...+.+.+|+|||+.|+..+. +..|++|++.+.....+..+.+.+...+|+|+|+.|+ +.+.++. |.+||+.++
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 457999999999999888764 4689999987766566667777888999999998875 5555554 555566544
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CC--eEEE
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 362 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~i~i 362 (501)
.. ..+..+.+......|+|||+.|+..+. +| .|.+
T Consensus 281 ~~------------------------------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 281 TT------------------------------------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ce------------------------------------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 32 122223344556899999998887764 33 5788
Q ss_pred EeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC---CeEEEEeCCCCeEEEEeeCCCCCeEEEEECC
Q 010777 363 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNGHREPVYSLAFSP 439 (501)
Q Consensus 363 wd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 439 (501)
||+.++.. ..+......+....|+|+|. .|+..+.+ ..|.+||+..+.. ..+. ....+..+.|+|
T Consensus 319 ~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 319 MNADGSNP-RRISFGGGRYSTPVWSPRGD---------LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP 386 (435)
T ss_pred EECCCCCe-EEeecCCCcccCeEECCCCC---------EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC
Confidence 88776543 33333344566788999986 34443322 3688888765443 3332 223467889999
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEEecCCCEEEEEECCC
Q 010777 440 TGEYLASGSLD------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 481 (501)
Q Consensus 440 dg~~lasgs~D------g~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~ 481 (501)
||++|+..+.+ ..|.++++..+.. ..+...+.+...+|+|-
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 99998765543 2588888876554 34444555778899874
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.1e-13 Score=134.30 Aligned_cols=212 Identities=14% Similarity=0.167 Sum_probs=141.0
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEec---CCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEE
Q 010777 234 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 310 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
..|.+||..+.....+..+...+...+|+|+|+.|+..+. +..+.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------- 237 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------------
Confidence 3788899887666666667788999999999998876542 3467777776553211
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE-eCCC--eEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-s~Dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
+..+.++ +..++|+|||+.|+.. +.+| .|.+||+.++.... +..+...+....|+
T Consensus 238 ------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS 295 (429)
T PRK03629 238 ------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF 295 (429)
T ss_pred ------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC
Confidence 1112222 3357899999988754 4455 58889998776543 33344567788999
Q ss_pred CCCCCCCCCCCcEEEEEEe-CCCe--EEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC---CcEEEEeCCCC
Q 010777 388 PTGSGTNNPNQQLILASAS-FDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEG 461 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs-~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D---g~i~iw~~~~~ 461 (501)
|+|. .|+..+ .++. |.++|+..+.. ..+..+...+....|||||++|+..+.+ ..|.+|++.++
T Consensus 296 PDG~---------~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 296 PDSQ---------NLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCCC---------EEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 9986 344444 3444 44446665543 3333344456678999999999876543 35889999888
Q ss_pred eeEEEEecCCCEEEEEECCCCCEEEEEECCCe---EEEEEe
Q 010777 462 KIVKTYTGNGGIFEVCWNKEGDKIAACFANHT---VCVLDF 499 (501)
Q Consensus 462 ~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~---v~v~~~ 499 (501)
... .+.........+|+|||++|++++.++. +.++++
T Consensus 366 ~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 366 GVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 643 3333223457889999999999887765 455543
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.3e-13 Score=137.60 Aligned_cols=214 Identities=17% Similarity=0.208 Sum_probs=140.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEE-EEecCC--eEEEEeCCCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~i~iwd~~~~ 285 (501)
...+.+.+|+|||+.|+..+.. ..|++|+..+.....+..+.+...+++|+|+|+.|+ +.+.++ .|++||+.++
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 3468899999999999988744 469999987655555555555566889999998775 445554 4777776654
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CCe--EEE
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKI 362 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~--i~i 362 (501)
... .+..+......++|+|||+.|+.++. +|. |.+
T Consensus 283 ~~~------------------------------------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 283 QLT------------------------------------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred CeE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 321 12223333456899999998887764 444 666
Q ss_pred EeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEe-CCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECC
Q 010777 363 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSP 439 (501)
Q Consensus 363 wd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 439 (501)
+++.++... .+..........+|+|+|. .|+..+ .++ .|.+||+.+++.. .+. +........|+|
T Consensus 321 ~dl~~g~~~-~lt~~g~~~~~~~~SpDG~---------~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 321 VAASGGSAE-RLTFQGNYNARASVSPDGK---------KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP 388 (433)
T ss_pred EECCCCCeE-EeecCCCCccCEEECCCCC---------EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC
Confidence 676665432 2222333445689999986 344333 222 6999999877654 333 222455679999
Q ss_pred CCCEEEEEeCC---CcEEEEeCCCCeeEEEEe-cCCCEEEEEECC
Q 010777 440 TGEYLASGSLD---KSMHIWSLKEGKIVKTYT-GNGGIFEVCWNK 480 (501)
Q Consensus 440 dg~~lasgs~D---g~i~iw~~~~~~~~~~~~-~~~~i~~~~ws~ 480 (501)
||++|+..+.+ +.|.++++..+ ....+. +.+.+..++|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 99998876653 46888888543 344443 345577889987
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=2.4e-14 Score=127.53 Aligned_cols=267 Identities=21% Similarity=0.405 Sum_probs=175.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc------eeEeecCCC------------CCEEEEEecCCCC--EEEEE
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKGD--YLLTG 271 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~ 271 (501)
..-|.++.|...|.+|++|..+|.|-++..+.. ....++.|. ..|..++|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 456889999999999999999999999975422 223455554 3578899998764 57778
Q ss_pred ecCCeEEEEeCCCcceeE-eee----eccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeec-CCCCceeEEEEc
Q 010777 272 SCDKTAIVWDVKTEEWKQ-QFE----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWD 345 (501)
Q Consensus 272 s~D~~i~iwd~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~ 345 (501)
..|++|++|-+....... .+. ...+.+..+.. .+....+-.+ ...|.+.+. +|..-|+++.++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----p~~~~~~~~v------ea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----PVEGRHDLEV------EASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeec-----eeecccccee------eeeeeeeccccceeEeeeeeec
Confidence 889999999876543221 000 00000111000 0111111111 012334443 688889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCce---eeeccc-----CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 010777 346 PTGSLLASCSDDVTAKIWNMKQDKY---VHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 417 (501)
Q Consensus 346 ~~~~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~-----~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 417 (501)
.|+..++++ +|=.|.+|++.--.. +..++. ....|++..|+|.. .++++..|.-|+||+-|++
T Consensus 174 sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~--------cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 174 SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH--------CNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred CccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH--------ccEEEEecCCCcEEEeech
Confidence 999988876 577899998753211 111111 12345566666654 3578888899999999998
Q ss_pred CCeE------EEEee----------CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC-CCCeeEEEEecC----------
Q 010777 418 LGKL------LYSLN----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKIVKTYTGN---------- 470 (501)
Q Consensus 418 ~~~~------~~~~~----------~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~-~~~~~~~~~~~~---------- 470 (501)
...+ ++... .--..|.++.|+++|+||++-.. -+|++||+ ...+.+.+++.+
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 4322 22111 11245888999999999998543 58999999 456666666543
Q ss_pred ---CCE---EEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 471 ---GGI---FEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 471 ---~~i---~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
..| +.++|+.++.++++|+.+..++||++
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 223 57999999999999999999999984
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=6.6e-14 Score=139.19 Aligned_cols=206 Identities=20% Similarity=0.224 Sum_probs=136.1
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecC---CeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEE
Q 010777 234 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 310 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
..|.+||..+.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------- 234 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------- 234 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---------------------
Confidence 46777787776666666788889999999999998876643 358888887664211
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCCCeEEEEeC--CCCceeeecccCCCCEEEEEEc
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNM--KQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
+....+.+.+.+|+|||+.|+ +.+.+|...||.+ ..+. ...+..+........|+
T Consensus 235 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 235 ---------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence 111122345789999998876 5677887777654 4333 34454455556678899
Q ss_pred CCCCCCCCCCCcEEEEEEeCCCeEEEEeC--CCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEeCCCCe
Q 010777 388 PTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 462 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg---~i~iw~~~~~~ 462 (501)
|+|. .+++++..+|...||.+ ..+.. ..+..+.......+|||||++|+..+.++ .|.+|++.+++
T Consensus 293 pDG~--------~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 293 PDGR--------SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCC--------EEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 9986 23344444566666654 44432 22222223344679999999999777654 69999998887
Q ss_pred eEEEEecCCCEEEEEECCCCCEEEEEECCC
Q 010777 463 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 492 (501)
Q Consensus 463 ~~~~~~~~~~i~~~~ws~~g~~la~~~~d~ 492 (501)
.... ........++|+|||+.|+.+..++
T Consensus 364 ~~~l-t~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 364 VTAL-TDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred eEEc-cCCCCccCceECCCCCEEEEEEecC
Confidence 5433 3333346789999999998876544
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.63 E-value=6.7e-14 Score=124.81 Aligned_cols=245 Identities=21% Similarity=0.352 Sum_probs=174.1
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
..++||.+.|++...-|...-+.+.+.|.++|||--.+.... .+.....-.++++++.++++...
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~---------------wpsI~~~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY---------------WPSIYHYMPSPCSAMEYVSESRR 82 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc---------------CchhhhhCCCCceEeeeeccceE
Confidence 457899999999999998889999999999999953221100 00111122567999999999999
Q ss_pred EEEEeCCCeEEEEECCCc-----eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe-EE
Q 010777 227 LATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LD 300 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-~~ 300 (501)
|+.|-.+|++.-+..... .......|...|..+-|+-...++++.+.|+.+.-.-.+.+.....+.....++ +.
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 999999999988875432 222345799999999999888999999999876544444444443333222111 00
Q ss_pred EecCCCceEEEecCCCeEEEEEc--CCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eeecccC
Q 010777 301 VDWRNNVSFATSSTDNMIYVCKI--GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH 377 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~i~~~~~--~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~ 377 (501)
.+.. ....+...+.+....+ ..-.++..+.+|.+.+.+++|.|...++.+|..|..+.+||+-..+. ...+.+|
T Consensus 163 ~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 163 FDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred eeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 1111 1122333344444433 34457888999999999999999999999999999999999865543 3567788
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
...|..+...+... .|.+++.||.|.+|++..
T Consensus 240 ~~kV~~l~~~~~t~---------~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 240 NDKVQALSYAQHTR---------QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhhhhhe---------eeeeccCCCeEEEEeccc
Confidence 88888877666543 688999999999998753
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.9e-13 Score=134.67 Aligned_cols=215 Identities=20% Similarity=0.281 Sum_probs=139.1
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEE-EEecCCeEEEEeC--CCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDV--KTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~i~iwd~--~~~ 285 (501)
...+.+.+|+|||+.|+..+.. ..|++|++.+.....+....+.+.+.+|+|+|+.|+ +.+.++...||.+ .++
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS 274 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 4568899999999999887653 469999987665545554556667899999999876 5666776666643 222
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CCeEEEEe
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWN 364 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~i~iwd 364 (501)
. ...+..+.+......|+|||+.|+..+. +|...||.
T Consensus 275 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 275 G------------------------------------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred C------------------------------------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence 1 1122233344556789999998876654 46666665
Q ss_pred C--CCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEeeCCCCCeEEEEECC
Q 010777 365 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSP 439 (501)
Q Consensus 365 ~--~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 439 (501)
+ .++.. ..+...........|+|+|. +|+..+.++ .|.+||+.+++... +... .......|+|
T Consensus 313 ~~~~~g~~-~~lt~~g~~~~~~~~SpDG~---------~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~sp 380 (427)
T PRK02889 313 MPASGGAA-QRVTFTGSYNTSPRISPDGK---------LLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAP 380 (427)
T ss_pred EECCCCce-EEEecCCCCcCceEECCCCC---------EEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECC
Confidence 4 34332 22222223344678999986 455444443 69999998876543 3322 2346789999
Q ss_pred CCCEEEEEeCCC---cEEEEeCCCCeeEEEEec-CCCEEEEEECCC
Q 010777 440 TGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 481 (501)
Q Consensus 440 dg~~lasgs~Dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~ 481 (501)
||++|+.++.++ .+.+.++ +|.....+.. .+.+...+|+|-
T Consensus 381 dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 999998777543 3555566 4555555543 455788899984
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=2.4e-13 Score=119.16 Aligned_cols=118 Identities=29% Similarity=0.642 Sum_probs=91.8
Q ss_pred CCCceeEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC---CC
Q 010777 335 HQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DS 409 (501)
Q Consensus 335 h~~~v~~v~~~~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~---dg 409 (501)
..++|.+++|+|+|+.||.. ..++.|.+||++ .+.+..+. ...+..+.|+|+|. +|++|+. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~---------~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR---------FLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC---------EEEEEEccCCCc
Confidence 34579999999999987554 467799999997 55555553 46778999999997 5666654 46
Q ss_pred eEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeC------CCcEEEEeCCCCeeEEEE
Q 010777 410 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTY 467 (501)
Q Consensus 410 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~------Dg~i~iw~~~~~~~~~~~ 467 (501)
.|.+||+++.+.+.... | ..++.++|||||++|++++. |+.++||+.. |+++...
T Consensus 126 ~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 126 DLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 79999999888887765 3 34789999999999998764 7889999984 6665443
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=4.8e-13 Score=119.37 Aligned_cols=315 Identities=17% Similarity=0.305 Sum_probs=194.1
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccc--------cCCCCeEEEEECCCC
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGEG 224 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~~~~s~~~ 224 (501)
..-|.++.|...|.+||||..+|.|-++.-..... +..++.. .+..|.. .....|..+.|.+++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------~ey~~~t--~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------GEYNFQT--EFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc------cceeeee--eeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 34588999999999999999999999997443211 1111111 1111111 112457888998865
Q ss_pred --CEEEEEeCCCeEEEEECCCc---e------------------e---------------E-eecCCCCCEEEEEecCCC
Q 010777 225 --TLLATGSYDGQARIWSTNGD---L------------------K---------------C-TLSKHKGPIFSLKWNKKG 265 (501)
Q Consensus 225 --~~l~sg~~dg~i~iw~~~~~---~------------------~---------------~-~~~~h~~~V~~l~~~~~~ 265 (501)
..++..+.|.+|++|.+... . . . .-..|+--|.++.++.+.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 45777889999999964210 0 0 0 013577788999999999
Q ss_pred CEEEEEecCCeEEEEeCCCcc-eeEeeeec-------cCCeEEEecCC--CceEEEecCCCeEEEEEcCCCcce----ee
Q 010777 266 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFH-------SGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPI----KT 331 (501)
Q Consensus 266 ~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~----~~ 331 (501)
..++++. |-.|.+|++.-.. ........ ...+.+..|++ ...|+-++..|+|+++|++..... +.
T Consensus 177 Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 9888875 7889999885321 11111111 11234444543 456888899999999999853221 11
Q ss_pred e------------cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeeecccCC------------CC---EEE
Q 010777 332 F------------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHS------------KE---IYT 383 (501)
Q Consensus 332 ~------------~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~------------~~---v~~ 383 (501)
| .+--..|..+.|+++|+++++=.. -+|++||+. ..+++.+...|. .. -..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1 112245788999999999986543 589999984 445555544432 11 244
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEeeCCCCC--eEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010777 384 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREP--VYSLAFSPTGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 384 i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~--v~~l~~spdg~~lasgs~Dg~i~iw~~~~ 460 (501)
++|+-++. +++|||..+..+++++..|.. -.++.+.... ...+ ..-+.+.+++......+|
T Consensus 335 c~~sg~~~---------~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~---- 398 (433)
T KOG1354|consen 335 CSWSGNDS---------YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEIS---- 398 (433)
T ss_pred EEEcCCcc---------eEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCccccccc----
Confidence 67776664 789999999999999766543 2333332222 1111 011234444444332222
Q ss_pred CeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 461 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 461 ~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
+..+.....++..+|+|.-+.+|.+..+. +++|
T Consensus 399 ---vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 399 ---VDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ---cchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 22333344578899999999999888774 5544
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=6.6e-12 Score=117.82 Aligned_cols=313 Identities=16% Similarity=0.258 Sum_probs=204.6
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
-.-++..++|||.|++|++...-+ |.+|.-.... .+..+ ....|..+.|||.++||.+=+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~-------------~l~~~------~~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA-------------KLVRF------RHPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchh-------------heeee------ecCCceecccCcccceeeeec
Confidence 344688899999999999876544 7888744321 01111 134699999999999999876
Q ss_pred CCC---------------eEEEEECCC-ceeEeecCCCCC--EE-EEEecCCCCEEEEEecCCeEEEEeCCCcceeEeee
Q 010777 232 YDG---------------QARIWSTNG-DLKCTLSKHKGP--IF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 292 (501)
Q Consensus 232 ~dg---------------~i~iw~~~~-~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 292 (501)
..+ .+.+||..+ .+...+..-..+ .+ -+.|+-+..|++--. ...+.|+++ +.... ...
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~-~~p 167 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIE-EHP 167 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccc-cCc
Confidence 544 489999765 455556555554 55 678998888765432 246899986 43321 111
Q ss_pred ec---cCCeEEEecCCC---ceEEE-----ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe------
Q 010777 293 FH---SGPTLDVDWRNN---VSFAT-----SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS------ 355 (501)
Q Consensus 293 ~~---~~~~~~~~~~~~---~~~~~-----~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s------ 355 (501)
.+ ...+..+.|.+. ..++. ....+++++|.+..+.++.+-.-....-..+.|++.|++++.--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 122334444322 12222 24567889998887766554332233345688999988765321
Q ss_pred -----CCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCC
Q 010777 356 -----DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 430 (501)
Q Consensus 356 -----~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 430 (501)
....+.|+++....+.... ...++|..++|.|.+. +..+++|-.+-.+.++|++.. ..+.+.. .
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe--~ 316 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN-LRFYFPE--Q 316 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCC-------ceeEEecccccceeecccccc-eEEecCC--c
Confidence 1235677777643332222 4578999999999886 345777888999999999855 5555442 3
Q ss_pred CeEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeeEE-EEecCCCEEEEEECCCCCEEEEEEC------CCeEEEEEe
Q 010777 431 PVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVK-TYTGNGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 499 (501)
Q Consensus 431 ~v~~l~~spdg~~lasgs~D---g~i~iw~~~~~~~~~-~~~~~~~i~~~~ws~~g~~la~~~~------d~~v~v~~~ 499 (501)
.=+.+.|||.+++++.++.| |.|-+|+.....++. .+.+. ...-+.|+|||.++.+... |..+.|||+
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC-CceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 45778999999999998876 689999988765544 44332 2345679999998887643 556888886
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=3.5e-13 Score=136.38 Aligned_cols=221 Identities=18% Similarity=0.267 Sum_probs=162.6
Q ss_pred CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCC-----eE
Q 010777 225 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----TL 299 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-----~~ 299 (501)
.+++++..-+.+..-....+....+.. -|....+.-....++.+..+..+.+||...+............ ..
T Consensus 62 ~~~v~~~~~~~v~~~~~~~~~~~~~s~---wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~ 138 (967)
T KOG0974|consen 62 GKIVTCAKSDEVYVKEASNQIIERFSD---WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI 138 (967)
T ss_pred ceEEEEEeecceeecchhhhhhhhccc---cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence 345555544444443333222222222 2333445556678888889999999998776544433222111 11
Q ss_pred EEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee-ecccCC
Q 010777 300 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHS 378 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~ 378 (501)
...-.....+++++.-+.|.+|+.....+-..+.||.+.|..+.|+-||++++++|+|.++|+|++.+.+... ...+|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 1122345667788888999999987544333678999999999999999999999999999999999887765 667899
Q ss_pred CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC-CCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 379 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 379 ~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
..+..++|.|+ .++|++.|.+.++|+.. +..+..+.+|. ..|..++.++....++|++.|+.+++|+
T Consensus 219 aRvw~~~~~~n-----------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 219 ARVWACCFLPN-----------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ceeEEEEeccc-----------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999886 48999999999999765 55556777775 5699999999999999999999999999
Q ss_pred CCC
Q 010777 458 LKE 460 (501)
Q Consensus 458 ~~~ 460 (501)
+..
T Consensus 287 l~~ 289 (967)
T KOG0974|consen 287 LNG 289 (967)
T ss_pred hhc
Confidence 864
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.6e-12 Score=122.02 Aligned_cols=280 Identities=16% Similarity=0.206 Sum_probs=198.1
Q ss_pred CccceeEEEECCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 010777 152 HTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 230 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l-~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 230 (501)
|...-+.|..+|||+++ |||..--.|++||+.+-. ++ +..+. .+..|...-.+.|-..++.-
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------LK-FERhl--Dae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------LK-FERHL--DAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccce--------------ee-eeecc--cccceeEEEeccchhhheEe
Confidence 55667889999999964 577788999999986421 11 11121 13445555566666666666
Q ss_pred eCCCeEEEEECCCceeE-eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC-ce
Q 010777 231 SYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VS 308 (501)
Q Consensus 231 ~~dg~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 308 (501)
-.|+.|-+-...|.... .+. ..-..++++.-.--|+.++....|+-.++..|.+...|....+.+..+...+- ..
T Consensus 113 ~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL 189 (703)
T ss_pred ecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence 67777776654443211 111 22245666543334555555667888999999999999988888888887654 45
Q ss_pred EEEecCCCeEEEEEcCCCcceeeec------CCCC-----ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec-cc
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTFA------GHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-RE 376 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~~------~h~~-----~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~ 376 (501)
+++++.+|.|-.||.+....+..+. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..- +.
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 5666779999999988766554442 2333 4999999999999999999999999999998876432 23
Q ss_pred CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010777 377 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 456 (501)
Q Consensus 377 ~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw 456 (501)
..-+|..+.|.+.+. +..|+|. ....++|||-.+|+....+... ..++.+++-|++.++.+|-.++.+..|
T Consensus 270 ~e~pi~~l~~~~~~~-------q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQ-------QNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred CccceeeecccccCC-------CceEEec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence 345788899977632 2245554 3467999999999988877643 459999999999999999988887777
Q ss_pred eCCC
Q 010777 457 SLKE 460 (501)
Q Consensus 457 ~~~~ 460 (501)
=+..
T Consensus 341 yiP~ 344 (703)
T KOG2321|consen 341 YIPS 344 (703)
T ss_pred Eccc
Confidence 5543
No 237
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-12 Score=132.98 Aligned_cols=252 Identities=17% Similarity=0.252 Sum_probs=176.4
Q ss_pred EECCCceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcc-------eeEeeeeccCCeEEEec-CCCceE
Q 010777 239 WSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE-------WKQQFEFHSGPTLDVDW-RNNVSF 309 (501)
Q Consensus 239 w~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~ 309 (501)
|+..|..+..+..|...|..++.++.. .+|+|||.||+|++||++... ...++......+..+.. .+...|
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 888888888999999999988887655 899999999999999986422 12233333455666654 456778
Q ss_pred EEecCCCeEEEEEcCCCcc-------eeeecCCC-C-ceeEEEEcC-CC-CEEEEEeCCCeEEEEeCCCCceeeecc--c
Q 010777 310 ATSSTDNMIYVCKIGENRP-------IKTFAGHQ-G-EVNCVKWDP-TG-SLLASCSDDVTAKIWNMKQDKYVHDLR--E 376 (501)
Q Consensus 310 ~~~~~d~~i~~~~~~~~~~-------~~~~~~h~-~-~v~~v~~~~-~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~ 376 (501)
+.++.||.|.+.+++.... .+....+. + .|..-+|.. .+ ..++.+..-+.|..||.+....+..++ .
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 8899999999998876211 11111121 2 233333332 22 368888889999999998766554443 3
Q ss_pred CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee-CCCCCeEEEEECCCC---CEEEEEe--CC
Q 010777 377 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTG---EYLASGS--LD 450 (501)
Q Consensus 377 ~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spdg---~~lasgs--~D 450 (501)
..+.|++++.+|.+. +++.|...|.+.+||++-+.++.... ++..+|+.+..+|-. .+.++++ ..
T Consensus 1194 ~hG~vTSi~idp~~~---------WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN---------WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred cccceeEEEecCCce---------EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 457899999999875 89999999999999999888776543 345788888777653 4555554 46
Q ss_pred CcEEEEeCCCCeeEEEEecC-C-------------------CEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 451 KSMHIWSLKEGKIVKTYTGN-G-------------------GIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 451 g~i~iw~~~~~~~~~~~~~~-~-------------------~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
+.|-+|+..+|....++-.. + ....+++...+..+.+|+.|..|+.||.
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 78999999998654443211 0 1123344444568889999999999985
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.8e-12 Score=115.12 Aligned_cols=271 Identities=17% Similarity=0.232 Sum_probs=180.2
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEE-EEEecCCeEEEEeCCCcceeEeeeecc
Q 010777 217 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHS 295 (501)
Q Consensus 217 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~ 295 (501)
-++|||+|+++++++.- .+.|-|.+.-....+-.--..|.-+.|..+.-++ ...+.|+.|.+|++...++...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46799999999998865 5556665542221111112456678888877654 456778899999999999999998888
Q ss_pred CCeEEEecCCCc--eEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCe---EEEEeCCCCce
Q 010777 296 GPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT---AKIWNMKQDKY 370 (501)
Q Consensus 296 ~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~---i~iwd~~~~~~ 370 (501)
.+...+.|.++. .+.++.-+-.|.+|.+.+.+.... .--...+..++|+|||++.+.++.-.. +.|..-.....
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 888999997664 455677888999999977654322 111234577888888888776654211 11110000111
Q ss_pred eeecccCC--------------------------------CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 371 VHDLREHS--------------------------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 371 ~~~~~~~~--------------------------------~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
+..+.... -.+..+.|+|.+. +|+.|+.|+.+|+-+--+
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q---------flavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ---------FLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc---------eEEeeccchhhhhhceee
Confidence 11111122 2345556666554 789999999998864211
Q ss_pred CeE------------------------------------------------------------EEEee------CCCCCe
Q 010777 419 GKL------------------------------------------------------------LYSLN------GHREPV 432 (501)
Q Consensus 419 ~~~------------------------------------------------------------~~~~~------~h~~~v 432 (501)
-+. +..++ .-.-.+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 100 00011 001235
Q ss_pred EEEEECCCCCEEEEEeC--CCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 433 YSLAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 433 ~~l~~spdg~~lasgs~--Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
.-++||+|..|+||-.. -+.+.+||++.-++...+.....|....|+|.--.|+.|.....+++|-
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 66899999999998653 3679999999888777777777899999999999999998888888884
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=6.1e-12 Score=125.71 Aligned_cols=206 Identities=20% Similarity=0.246 Sum_probs=138.6
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecC---CeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEE
Q 010777 234 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 310 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
..|.+++..+.....+..+...+...+|+|+|++|+.++.+ ..|++||+.++....
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------- 228 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------- 228 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------
Confidence 35778887766556666777789999999999998876643 368888876653211
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
+..+.+.+.+++|+|||+.|+ +.+.++ .|.+|++.++... .+..+........|+
T Consensus 229 ---------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 229 ---------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS 286 (417)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC
Confidence 111233455688999998765 444444 5888898876543 333344444567888
Q ss_pred CCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC---cEEEEeCCCCe
Q 010777 388 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 462 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg---~i~iw~~~~~~ 462 (501)
|+|. .++++....+ .|.++|+.+++. ..+..+...+..++|+|+|++|+.++.++ .|.+|++.++.
T Consensus 287 ~dg~--------~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 287 PDGK--------SIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 8875 2333433333 588888876654 33444455677889999999999888776 89999998765
Q ss_pred eEEEEecCCCEEEEEECCCCCEEEEEECCC
Q 010777 463 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 492 (501)
Q Consensus 463 ~~~~~~~~~~i~~~~ws~~g~~la~~~~d~ 492 (501)
... +.........+|+|+|++|+.++.++
T Consensus 358 ~~~-l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 358 ERV-LTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eEE-ccCCCCCCCceECCCCCEEEEEEeCC
Confidence 432 22223345678999999988876654
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=4e-12 Score=123.53 Aligned_cols=296 Identities=17% Similarity=0.272 Sum_probs=201.5
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCC--CCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 154 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 154 ~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
...+|++|+....++|.||.||.+++-.+.+........+ .+.++. +.....+|+..|..+.|+...+.|.+..
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLs----mNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLS----MNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccc----hhhhhccCcceEEEEEeccccccccccC
Confidence 3468999999999999999999999998876544332211 111111 2233456789999999999999999999
Q ss_pred CCCeEEEEECCCcee---EeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCce
Q 010777 232 YDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 308 (501)
Q Consensus 232 ~dg~i~iw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (501)
.+|.|.||-+-...- ..-...++-|.+++|+.+|..++....||.|.+=.+...
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN----------------------- 147 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN----------------------- 147 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-----------------------
Confidence 999999998643221 123345677899999999999999999998876544322
Q ss_pred EEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-------e-e---eecccC
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-------Y-V---HDLREH 377 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~-------~-~---~~~~~~ 377 (501)
++|.- .+.|. ....+.|++|.+.++.+-..|.+.+||....- + + ..+...
T Consensus 148 ----------RIwgK-------eLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~ 208 (1189)
T KOG2041|consen 148 ----------RIWGK-------ELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNF 208 (1189)
T ss_pred ----------eecch-------hcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCC
Confidence 12211 11110 12357899999888888888999999864321 1 1 011122
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCC------
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLD------ 450 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~D------ 450 (501)
...+..+.|....-....|+ ...|+.+..+|.+.|..-.+. .++..-.+ -.|..+.|+++|.+||.+|.|
T Consensus 209 ~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred CccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence 33456667754333333333 346788889998888754433 23322222 457889999999999998865
Q ss_pred ---CcEEEEeCCCCeeEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 451 ---KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 451 ---g~i~iw~~~~~~~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+.|++|.. -|+.+.++..++ .|++++|-..|-.+|.+- |+.|.+-++|
T Consensus 286 ~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIR 337 (1189)
T KOG2041|consen 286 TDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIR 337 (1189)
T ss_pred cccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeec
Confidence 36777764 477888887765 599999999998877764 5677777765
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.7e-11 Score=116.54 Aligned_cols=273 Identities=17% Similarity=0.372 Sum_probs=164.8
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEE-----ecC-----CeEEEE
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTG-----SCD-----KTAIVW 280 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~D-----~~i~iw 280 (501)
+.+....++|++|++|+.+. +..++|++.... ...+.. ...++.|.|+|.+++|.+- ..+ .-+++|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34467788999999887754 568889886544 322222 2278999999999998762 222 346799
Q ss_pred eCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCc---------------------------------
Q 010777 281 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--------------------------------- 327 (501)
Q Consensus 281 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--------------------------------- 327 (501)
++.++.....+......-....|..+..+++=-..+.+++++....+
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 98884333222211111112222222111111111122222221110
Q ss_pred ----ceeeec----C-C---------CCceeEEEEcCCCCE-E--EEEeCCC---------eEEEEeCCCCceeeecccC
Q 010777 328 ----PIKTFA----G-H---------QGEVNCVKWDPTGSL-L--ASCSDDV---------TAKIWNMKQDKYVHDLREH 377 (501)
Q Consensus 328 ----~~~~~~----~-h---------~~~v~~v~~~~~~~~-l--~s~s~Dg---------~i~iwd~~~~~~~~~~~~~ 377 (501)
.++.+. + | ...-..+.|++-|.- | ++..-|. ++++.++....++..+. .
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k 269 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-K 269 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-C
Confidence 011110 0 0 011124556655542 2 2222222 45566655333333332 3
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC---CcEE
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMH 454 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D---g~i~ 454 (501)
.++|+++.|+|.+. +..++.|-.--.+.|||++ +.+++.+. .++-+++-|+|.|++|+.+|.+ |.|-
T Consensus 270 ~GPVhdv~W~~s~~-------EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGR-------EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCceEEEECCCCC-------EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceE
Confidence 68999999999986 3456778888899999987 67777765 4677999999999999998865 7899
Q ss_pred EEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEEC------CCeEEEEEe
Q 010777 455 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 499 (501)
Q Consensus 455 iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~------d~~v~v~~~ 499 (501)
|||+.+.+++..+.... .+-+.|+|||.+++++.. |..+.||+.
T Consensus 340 vwDv~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEeccchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 99999988877765433 356789999999998754 467888875
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.8e-11 Score=124.14 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=157.5
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 010777 154 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 233 (501)
Q Consensus 154 ~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 233 (501)
..|....+.-+.+.++.+..++.+-+||...+......+...... .....-+-++++.-++++|+.-
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------------l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------------LYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------------EEeEEEEeccCcEEEEEecccc
Confidence 345556777788899999999999999987654333222211111 1123334567788899999999
Q ss_pred CeEEEEECCCceeE-eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeE-eeeeccCCeEEEecCCCceEEE
Q 010777 234 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 234 g~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
+.|.+|........ .+.+|.+.|+.+.|+-+|.+++++|.|+++|+|++.+.+... ....|...+..+.+.++ .+++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t 233 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIIT 233 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEE
Confidence 99999997643333 588999999999999999999999999999999999987666 66678888888888777 8999
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCC-ceeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~ 367 (501)
++.|-+.++|.... ..+..+.+|.+ .|..++..++...++|++.|+.+++|++..
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999996543 34457888875 699999999999999999999999999754
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=8.3e-13 Score=124.40 Aligned_cols=241 Identities=20% Similarity=0.287 Sum_probs=159.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCc--e----eEeecCCCCCEEEEEe-----cCCCCEEEEEecCCeEEEEe
Q 010777 213 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--L----KCTLSKHKGPIFSLKW-----NKKGDYLLTGSCDKTAIVWD 281 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~--~----~~~~~~h~~~V~~l~~-----~~~~~~l~s~s~D~~i~iwd 281 (501)
..++...++..|.+|+-.- ...+++|+..+. . ...+-.-+++ ++-.| .|.+--|+.|-.-|.|.+.|
T Consensus 124 g~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred cceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCC-ceecccccccCCCCcceEEeeccCceEEec
Confidence 3456666667777766533 246778876531 1 1111122233 23333 35566788888888999988
Q ss_pred CCCcceeEeee----eccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe
Q 010777 282 VKTEEWKQQFE----FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 355 (501)
Q Consensus 282 ~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s 355 (501)
+...++.+.|. .....+.++.|. ....|+.+..+|.+++++..... +-+ -.+-...+++..|+..
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t--~p~~~~~k~~~~f~i~- 272 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GAT--APSYQALKDGDQFAIL- 272 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCC--CCcccccCCCCeeEEe-
Confidence 76644333222 223567888885 45678888888888888762111 000 1111223344444332
Q ss_pred CCCeEEEEeC-CCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEE
Q 010777 356 DDVTAKIWNM-KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 434 (501)
Q Consensus 356 ~Dg~i~iwd~-~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 434 (501)
.|-. .+..++..+..-.+.|..++|+|+|. +||+.|.||.+||||..+.+++..++..-+...|
T Consensus 273 ------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLC 337 (636)
T KOG2394|consen 273 ------TSKSKKTRNPVARWHIGEGSINEFAFSPDGK---------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLC 337 (636)
T ss_pred ------eeeccccCCccceeEeccccccceeEcCCCc---------eEEEEecCceEEEeeccHHHHHHHHHhhccceEE
Confidence 2211 11234444444456888999999997 8999999999999999988887777777788999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-CEEEEEEC
Q 010777 435 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 479 (501)
Q Consensus 435 l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-~i~~~~ws 479 (501)
++|||||+|||+||.|-.|.||.+..++++..-.++. .|..|+|.
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999999999999999988876654 57778877
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=1.6e-11 Score=122.69 Aligned_cols=212 Identities=18% Similarity=0.253 Sum_probs=136.0
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEE-EEecCC--eEEEEeCCCcc
Q 010777 213 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE 286 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~i~iwd~~~~~ 286 (501)
..+.+.+|+|||++|+.+... ..|++|++.+.....+..+.+.+.+++|+|+|+.|+ +.+.++ .|.+||+.++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 457888999999999987654 479999987654445555667778899999998776 444443 46666665543
Q ss_pred eeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCC-C--eEEEE
Q 010777 287 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-V--TAKIW 363 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D-g--~i~iw 363 (501)
.. .+..+........|+|||+.|+.++.. + .|.+|
T Consensus 270 ~~------------------------------------------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 270 LT------------------------------------------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred EE------------------------------------------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 11 111222333456899999988766543 3 57778
Q ss_pred eCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCC---eEEEEeCCCCeEEEEeeCCCCCeEEEEECCC
Q 010777 364 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 364 d~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 440 (501)
++.+++.. .+..+...+....|+|+|. +|+.++.++ .|.+||+.++... .+... ......+|+|+
T Consensus 308 d~~~~~~~-~l~~~~~~~~~~~~spdg~---------~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd 375 (417)
T TIGR02800 308 DADGGEVR-RLTFRGGYNASPSWSPDGD---------LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN 375 (417)
T ss_pred ECCCCCEE-EeecCCCCccCeEECCCCC---------EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence 87766532 3333445667788999886 455555554 7889998875442 23222 22455689999
Q ss_pred CCEEEEEeCCC---cEEEEeCCCCeeEEEEec-CCCEEEEEEC
Q 010777 441 GEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWN 479 (501)
Q Consensus 441 g~~lasgs~Dg---~i~iw~~~~~~~~~~~~~-~~~i~~~~ws 479 (501)
|++|+.++.++ .+.+.+.. |+....+.. .+.+..++|+
T Consensus 376 g~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 376 GRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCCC
Confidence 99988776653 45565543 444444432 3445666664
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.6e-11 Score=120.38 Aligned_cols=212 Identities=16% Similarity=0.174 Sum_probs=135.7
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecC---CeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE
Q 010777 235 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 235 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
.|.++|.++.....+..+...+....|+|+|++|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---------------------- 237 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---------------------- 237 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------
Confidence 4777787776656666778889999999999998766543 357777776654211
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCCC--eEEEEeCCCCceeeecccCCCCEEEEEEcC
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSP 388 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p 388 (501)
+....+.+....|+|||+.|+ +.+.+| .|.+||+.++... .+..+........|+|
T Consensus 238 --------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 238 --------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK 296 (430)
T ss_pred --------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence 111122334688999999876 455555 5888898877543 3444444556678999
Q ss_pred CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCee
Q 010777 389 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-K--SMHIWSLKEGKI 463 (501)
Q Consensus 389 ~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D-g--~i~iw~~~~~~~ 463 (501)
+|. .++++...+| .|.++++.+++... +..........+|+|+|++|+..+.+ + .|.+||+.+++.
T Consensus 297 Dg~--------~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 297 DGR--------TLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 886 2444443343 57777887776432 22112233457899999999876643 3 588999988765
Q ss_pred EEEEecCCCEEEEEECCCCCEEEEEECC-C--eEEEEEe
Q 010777 464 VKTYTGNGGIFEVCWNKEGDKIAACFAN-H--TVCVLDF 499 (501)
Q Consensus 464 ~~~~~~~~~i~~~~ws~~g~~la~~~~d-~--~v~v~~~ 499 (501)
.. +..........|+|+|+.|+..+.. + .|.++++
T Consensus 368 ~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 368 RI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 33 3222223356899999998877653 3 3444443
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.6e-11 Score=120.11 Aligned_cols=216 Identities=16% Similarity=0.206 Sum_probs=130.9
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEE---EEEecCC--eEEEEeCCCcceeEeeeeccCCeEEEecCCCce
Q 010777 234 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL---LTGSCDK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 308 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l---~s~s~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (501)
..|.+.|.++.....+......+.+-+|+|+|+.+ ++...++ .|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------------------- 224 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------------------- 224 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--------------------
Confidence 35667777776555566666677788999999752 2444443 3444455444311
Q ss_pred EEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-----CCeEEEEeCCCC---ceeeecccCCCC
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQD---KYVHDLREHSKE 380 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-----Dg~i~iwd~~~~---~~~~~~~~~~~~ 380 (501)
.+..+ .+.....+|+|||+.|+..+. +..+.+|++..+ ............
T Consensus 225 -------------------~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~ 282 (428)
T PRK01029 225 -------------------KILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT 282 (428)
T ss_pred -------------------EeecC---CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC
Confidence 11112 222345789999988876553 223445776542 222222222233
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE--eCCC-CeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC---CcEE
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW--DVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMH 454 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw--d~~~-~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D---g~i~ 454 (501)
.....|+|+|. .++.+...+|...|| ++.. +.....+..+...+...+|||||++|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~--------~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGT--------RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCC--------EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 45679999986 234444456655555 4432 23344455455567889999999999876543 4699
Q ss_pred EEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEEC---CCeEEEEEe
Q 010777 455 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA---NHTVCVLDF 499 (501)
Q Consensus 455 iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~---d~~v~v~~~ 499 (501)
+||+.+++..........+..+.|+|||+.|+.... ...|.++|+
T Consensus 355 v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 355 VYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 999998876544433345678999999998886543 245667665
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.7e-11 Score=120.03 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=136.5
Q ss_pred CeEEEEECCCCCEE---EEEeCCC--eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEec-CC----eEEEEeCC
Q 010777 214 DVTTLDWNGEGTLL---ATGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK----TAIVWDVK 283 (501)
Q Consensus 214 ~V~~~~~s~~~~~l---~sg~~dg--~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~----~i~iwd~~ 283 (501)
.+.+-+|||||+.+ ++...+| .|.+.++.+.....+....+.....+|+|+|++|+..+. +| .+.+|++.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 45667899999752 2444444 566667766555555555566677899999998876542 22 22223332
Q ss_pred CcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe-CCCeEEE
Q 010777 284 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKI 362 (501)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s-~Dg~i~i 362 (501)
.+. .+.+.+...++.+.....+|+|||+.|+..+ .+|...|
T Consensus 266 ~g~--------------------------------------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 266 TGA--------------------------------------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred cCC--------------------------------------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 210 0111112222223345679999999877665 4665556
Q ss_pred Ee--CCC-CceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC--CeEEEEeCCCCeEEEEeeCCCCCeEEEEE
Q 010777 363 WN--MKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAF 437 (501)
Q Consensus 363 wd--~~~-~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 437 (501)
|. +.. +.....+......+....|+|+|. .++.++..+ ..|.+||+.+++... +......+....|
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~--------~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~w 378 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK--------KIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSW 378 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCC--------EEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEE
Confidence 54 432 222333444445667889999986 233333332 469999998887643 3333345678999
Q ss_pred CCCCCEEEEEeC---CCcEEEEeCCCCeeEEEEecCCCEEEEEECCCC
Q 010777 438 SPTGEYLASGSL---DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG 482 (501)
Q Consensus 438 spdg~~lasgs~---Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g 482 (501)
+|||++|+..+. ...|.+|++.+++........+.+...+|+|-.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 999998875432 357999999888766555556667889999865
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.6e-11 Score=116.70 Aligned_cols=293 Identities=17% Similarity=0.333 Sum_probs=183.0
Q ss_pred ceeEEEECCCCCEEEEE-----ECCC-----cEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 010777 155 EVCACAWSPAGSLLASG-----SGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 224 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sg-----s~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 224 (501)
.++++-|||-|.+|.|= ..++ .+++|++.++.... .+......-++..|+.|.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s-----------------~~q~k~Q~~W~~qfs~dE 137 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS-----------------QIQKKMQNGWVPQFSIDE 137 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehh-----------------heehhhhcCcccccccch
Confidence 68899999999998762 1222 35588876632110 111111122577888876
Q ss_pred CEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCC-C-EEE-----EEecCCeEEEEeCCCcceeEee---eec
Q 010777 225 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-D-YLL-----TGSCDKTAIVWDVKTEEWKQQF---EFH 294 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~-~-~l~-----s~s~D~~i~iwd~~~~~~~~~~---~~~ 294 (501)
.+.+ --..+.+.+|+..+.....-.-|...|+.+.++|.+ . .++ +.++-..|+||-.......+.. .+-
T Consensus 138 sl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 138 SLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 5432 334578999998764443444567788899999873 2 333 2466678999976522211111 011
Q ss_pred cCCeEEEecC--CCceEE--EecC---------CCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE--eCCCe
Q 010777 295 SGPTLDVDWR--NNVSFA--TSST---------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC--SDDVT 359 (501)
Q Consensus 295 ~~~~~~~~~~--~~~~~~--~~~~---------d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~--s~Dg~ 359 (501)
...-..+.|. ....++ ++.- ..++++..+........+ ...++|.++.|+|+++-|+.+ -.--+
T Consensus 217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccce
Confidence 1122234443 222222 2222 235677766633333222 246899999999999876554 45668
Q ss_pred EEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEeeCCCCCeEEEE
Q 010777 360 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSLNGHREPVYSLA 436 (501)
Q Consensus 360 i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 436 (501)
+.|||++ +.++..+ ..++-.++-|+|.|. +|+.++. -|.|-|||+.+.+++..+..-. -+-..
T Consensus 296 vtifnlr-~~~v~df--~egpRN~~~fnp~g~---------ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e 361 (566)
T KOG2315|consen 296 VTIFNLR-GKPVFDF--PEGPRNTAFFNPHGN---------IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE 361 (566)
T ss_pred EEEEcCC-CCEeEeC--CCCCccceEECCCCC---------EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence 9999976 4555554 456678889999986 4444444 4789999999988888777543 35679
Q ss_pred ECCCCCEEEEEeC------CCcEEEEeCCCCeeEEEEecCCCEEEEEECCC
Q 010777 437 FSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 481 (501)
Q Consensus 437 ~spdg~~lasgs~------Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~ 481 (501)
|+|||++|+|++. |+.++||+.. |.++....-....+.++|.|-
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence 9999999998864 7889999974 665554333335788888873
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.1e-11 Score=112.71 Aligned_cols=238 Identities=17% Similarity=0.271 Sum_probs=165.5
Q ss_pred CCEEEEEecCCC--CEEEEEecCCeEEEEeCCCcceeEee------eeccCCeEEEecCCCceEEEecCCCeEEEEEcCC
Q 010777 254 GPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQF------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 325 (501)
Q Consensus 254 ~~V~~l~~~~~~--~~l~s~s~D~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 325 (501)
..|.+++|..++ ..|+.++.|..+..+.+....+.... .+...++..+.. .+..+++|-.+|.+.+|....
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccC
Confidence 345666665444 34555556666666666555443332 112223322222 345677888899999998763
Q ss_pred C----cceeeecCCCCceeEEEEcCCCC-EEEEEeCC--CeEEEEeCCCCceeeecccCC---------CCEEEEEEcCC
Q 010777 326 N----RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDD--VTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPT 389 (501)
Q Consensus 326 ~----~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~D--g~i~iwd~~~~~~~~~~~~~~---------~~v~~i~~~p~ 389 (501)
+ .+...+..+ ..+..+.-++..+ .+|+|+.. ..+.|||+.+.+.+.+-+... -.++.+.|-|.
T Consensus 135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence 2 223333323 3344555555544 46679998 889999998876554332211 13455666554
Q ss_pred CCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEE-E
Q 010777 390 GSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-Y 467 (501)
Q Consensus 390 g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~-~ 467 (501)
.. ...||+++.-+.+|+||.+.+ +++..+.--..+|+++..-|+|++|.+|..-|.+..||+++++++.. +
T Consensus 214 ~~-------~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 214 SP-------NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred CC-------CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 21 247899999999999999866 45677776678999999999999999999999999999999998766 5
Q ss_pred ec-CCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 468 TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 468 ~~-~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.+ .++|.++.-+|.+.+||+|+.|..|+|+|++
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 55 4679999999999999999999999999985
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=5.4e-11 Score=119.08 Aligned_cols=216 Identities=16% Similarity=0.192 Sum_probs=133.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEE-EEecCC--eEEEEeCCCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~i~iwd~~~~ 285 (501)
...+....|+|||+.|+..+.+ ..|.+|++.+.....+....+.+....|+|+|++|+ +.+.++ .|.+||+.++
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3468889999999999876654 368888987655444544455566789999999876 444444 4666666654
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CC--eEEE
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 362 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~i~i 362 (501)
... .+..+........|+|||+.|+..+. +| .|.+
T Consensus 278 ~~~------------------------------------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 278 QLS------------------------------------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CeE------------------------------------------EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 321 11222333456789999998766654 33 5777
Q ss_pred EeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECCC
Q 010777 363 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 363 wd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 440 (501)
+++.+++... +...........|+|+|. .++++...++ .|.+||+.++... .+.. ........|+||
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg~--------~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spd 384 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADGK--------TLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPN 384 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCCC--------EEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCC
Confidence 7877665322 222222334567899886 2333333333 5888999877643 2221 122235689999
Q ss_pred CCEEEEEeCC---CcEEEEeCCCCeeEEEEec-CCCEEEEEECCC
Q 010777 441 GEYLASGSLD---KSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 481 (501)
Q Consensus 441 g~~lasgs~D---g~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~ 481 (501)
|++|+..+.+ ..|.++++.. .....+.. .+.+...+|+|-
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 9998876643 3577777753 33333333 345778889874
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.44 E-value=2.6e-10 Score=110.22 Aligned_cols=265 Identities=15% Similarity=0.172 Sum_probs=169.3
Q ss_pred EEEEeCCCeEEEEECCC-ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC-
Q 010777 227 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR- 304 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 304 (501)
+++-..++.|.|.|... +....+......-..+.|+|+|+++++++.|+.|.++|+.+.+.+.++.....+ ..+.+.
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEEEcC
Confidence 34555689999999875 445566554444455789999999999999999999999999988888654443 344443
Q ss_pred -CCceEEEecCCCeEEEEEcCCCcceeeecCC-------CCceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceee-ec
Q 010777 305 -NNVSFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVH-DL 374 (501)
Q Consensus 305 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~s~-Dg~i~iwd~~~~~~~~-~~ 374 (501)
....+++....+.+.++|..+.++++.+... ...+.++..+|....++..-. -+.|.+-|....+.+. ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 3445556678999999999998888876532 346778888888886655555 4788888876654332 22
Q ss_pred ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC----CCCCeEEE-------EEC--CCC
Q 010777 375 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG----HREPVYSL-------AFS--PTG 441 (501)
Q Consensus 375 ~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l-------~~s--pdg 441 (501)
...........|+|+++ +++++....+.|-++|..+++.+..+.. |..++..+ .|. ..+
T Consensus 168 i~~g~~~~D~~~dpdgr--------y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGR--------YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG 239 (369)
T ss_dssp EE--TTEEEEEE-TTSS--------EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred ecccccccccccCcccc--------eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence 23345567788999875 4566667778999999999988766532 33333322 121 123
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEE----ECCCeEEEEEee
Q 010777 442 EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC----FANHTVCVLDFR 500 (501)
Q Consensus 442 ~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~----~~d~~v~v~~~~ 500 (501)
.+.++.-....+.+|+..+++.++++...++..-+.-||+++++.+. ...++|+|+|.+
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 33333323346778999999999999876665888889999999988 445789999864
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3e-11 Score=115.64 Aligned_cols=225 Identities=18% Similarity=0.324 Sum_probs=166.3
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCcceeEeeeecc---CCeEEEec------C---------------CCceEEEecCCCe
Q 010777 262 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDW------R---------------NNVSFATSSTDNM 317 (501)
Q Consensus 262 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~------~---------------~~~~~~~~~~d~~ 317 (501)
.|...||+....||.+++||...++..+.|.... +...+..| . +...++.+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456789999999999999998888777664321 11122222 1 2235778888999
Q ss_pred EEEEEcCCCcceeeec--CCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCC
Q 010777 318 IYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 395 (501)
Q Consensus 318 i~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~ 395 (501)
|.++++..++....+. .|.+.|+++.++.+-..|.|++.|+.+..|+......++.+......+.+++.+|+|.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~---- 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK---- 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC----
Confidence 9999998887666665 6889999999999999999999999999999999998888888888999999999986
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCC-----CCEE-EEEeCCCcEEEEeCCC----CeeEE
Q 010777 396 PNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-----GEYL-ASGSLDKSMHIWSLKE----GKIVK 465 (501)
Q Consensus 396 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd-----g~~l-asgs~Dg~i~iw~~~~----~~~~~ 465 (501)
+|+++| +.|++||+.+++.+..+.||.++|.+++|--+ |.++ .+...+..|.+|-+.. ..+..
T Consensus 158 -----~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~ 230 (541)
T KOG4547|consen 158 -----ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSC 230 (541)
T ss_pred -----EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhhe
Confidence 677776 68999999999999999999999999999876 5555 4556677788887654 22334
Q ss_pred EEecCC-CEEEEEE-CCCCC---EEEEEECCCeEEEE
Q 010777 466 TYTGNG-GIFEVCW-NKEGD---KIAACFANHTVCVL 497 (501)
Q Consensus 466 ~~~~~~-~i~~~~w-s~~g~---~la~~~~d~~v~v~ 497 (501)
.+.... +++.=.| ..++. .+|....++.+..+
T Consensus 231 sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~ 267 (541)
T KOG4547|consen 231 SLTVPDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLK 267 (541)
T ss_pred eeccCCCCeEeccccccccccceEEeeeccCceeeec
Confidence 443322 2322222 33443 34444555555443
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=7.2e-11 Score=117.93 Aligned_cols=212 Identities=17% Similarity=0.213 Sum_probs=132.1
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecC-C--eEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEE
Q 010777 235 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 311 (501)
Q Consensus 235 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
.+.++|..+.....+..+...+....|+|+|++|+..+.+ + .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~---------------------- 256 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK---------------------- 256 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------------------
Confidence 5667787776555666677889999999999988766542 2 46677776553211
Q ss_pred ecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEE-EeCCCe--EEEEeCCCCceeeecccCCCCEEEEEEcC
Q 010777 312 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSP 388 (501)
Q Consensus 312 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~s~Dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~p 388 (501)
+..+. +.....+|+|||+.|+. .+.+|. |.+||+.++.. ..+..+........|+|
T Consensus 257 -----------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp 315 (448)
T PRK04792 257 -----------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP 315 (448)
T ss_pred -----------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC
Confidence 11111 12235789999997764 566665 77778877654 33444444567788999
Q ss_pred CCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEeCCCCee
Q 010777 389 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKI 463 (501)
Q Consensus 389 ~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~-Dg--~i~iw~~~~~~~ 463 (501)
+|. .++++...++ .|.++|+.+++... +..........+|+|||++|+..+. ++ .|.++++.+++.
T Consensus 316 DG~--------~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 316 DGK--------SLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 886 2444444444 46666777665432 2212222345799999999887654 34 466678887765
Q ss_pred EEEEecCCCEEEEEECCCCCEEEEEECCC---eEEEEEe
Q 010777 464 VKTYTGNGGIFEVCWNKEGDKIAACFANH---TVCVLDF 499 (501)
Q Consensus 464 ~~~~~~~~~i~~~~ws~~g~~la~~~~d~---~v~v~~~ 499 (501)
.. +.........+|+|+|+.|+....++ .+.++++
T Consensus 387 ~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 387 QV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 33 22222233568999999888765443 2555543
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=6.9e-09 Score=100.33 Aligned_cols=265 Identities=15% Similarity=0.245 Sum_probs=165.0
Q ss_pred EEEEeCC----CeEEEEECC--CceeE---eecCCCCCEEEEEecCCCCEEEEEec----CCeEEEEeCCCc--ce--eE
Q 010777 227 LATGSYD----GQARIWSTN--GDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTE--EW--KQ 289 (501)
Q Consensus 227 l~sg~~d----g~i~iw~~~--~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~----D~~i~iwd~~~~--~~--~~ 289 (501)
++.|++. +.|.+|..+ ..... .+. -......|+++|++++|++... .+.|..|.+... .+ +.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555555 688888762 22221 222 2233466889999999998876 468988887653 33 22
Q ss_pred eeeeccCCeEEEec--CCCceEEEecCCCeEEEEEcCCCccee----eec----------CCCCceeEEEEcCCCCEEEE
Q 010777 290 QFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIK----TFA----------GHQGEVNCVKWDPTGSLLAS 353 (501)
Q Consensus 290 ~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~----~~~----------~h~~~v~~v~~~~~~~~l~s 353 (501)
...........+.. .....+++...++.+.++++.....+. .+. .-.....++.++|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33322333344444 334455666789999999998742221 111 11234678999999998776
Q ss_pred Ee-CCCeEEEEeCCCCc--ee--eecc-cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeE--EE
Q 010777 354 CS-DDVTAKIWNMKQDK--YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LY 423 (501)
Q Consensus 354 ~s-~Dg~i~iwd~~~~~--~~--~~~~-~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~--~~~~--~~ 423 (501)
.. ....|++|++.... +. ..+. .....-..+.|+|++. .+.++.-.++.|.++++. .+.. +.
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--------YAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--------EEEEecCCCCcEEEEeecccCCceeEEE
Confidence 53 34479999987654 21 1222 2334567888999875 455667788999999987 4432 22
Q ss_pred EeeCC------CCCeEEEEECCCCCEEEEEe-CCCcEEEEeCC--CCee--EEEEecCC-CEEEEEECCCCCEEEEEE-C
Q 010777 424 SLNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLK--EGKI--VKTYTGNG-GIFEVCWNKEGDKIAACF-A 490 (501)
Q Consensus 424 ~~~~h------~~~v~~l~~spdg~~lasgs-~Dg~i~iw~~~--~~~~--~~~~~~~~-~i~~~~ws~~g~~la~~~-~ 490 (501)
.+... ......|+++|||++|.++. ..++|.+|++. +|++ +..+...+ ....++++|+|++|+++. .
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 22211 12578899999999987665 56789999983 3543 44454433 489999999999888775 5
Q ss_pred CCeEEEEEee
Q 010777 491 NHTVCVLDFR 500 (501)
Q Consensus 491 d~~v~v~~~~ 500 (501)
++.|.||++.
T Consensus 313 s~~v~vf~~d 322 (345)
T PF10282_consen 313 SNTVSVFDID 322 (345)
T ss_dssp TTEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 6799999874
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.5e-10 Score=115.58 Aligned_cols=216 Identities=16% Similarity=0.222 Sum_probs=130.6
Q ss_pred CCCeEEEEECCCCCEEEEEeCC-C--eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEE-EecCCe--EEEEeCCCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSYD-G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKT--AIVWDVKTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~d-g--~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~--i~iwd~~~~ 285 (501)
...+.+..|||||++|+..+.+ + .|++|+..+.....+....+.....+|+|+|+.|+. .+.++. |.+||+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 3467889999999998876543 2 578888765443334333344457899999998764 455554 555565544
Q ss_pred ceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CC--eEEE
Q 010777 286 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 362 (501)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~i~i 362 (501)
+. ..+..+.......+|+|||+.|+..+. ++ .|.+
T Consensus 297 ~~------------------------------------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 297 AL------------------------------------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYR 334 (448)
T ss_pred Ce------------------------------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 32 112223334556889999998766554 34 4666
Q ss_pred EeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECCC
Q 010777 363 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 363 wd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 440 (501)
+|+.+++... +...........|+|+|. .++++...++ .|.++|+.++... .+... .......|+||
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~--------~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spd 403 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITPDGR--------SMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPN 403 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECCCCC--------EEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCC
Confidence 6776665432 222222234568899886 2444444444 4555787777643 23222 12234589999
Q ss_pred CCEEEEEeC-CC--cEEEEeCCCCeeEEEEec-CCCEEEEEECCC
Q 010777 441 GEYLASGSL-DK--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 481 (501)
Q Consensus 441 g~~lasgs~-Dg--~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~ 481 (501)
|++|+..+. ++ .|.+++. +|.....+.. .+.+...+|+|-
T Consensus 404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 998876554 33 3777786 4555555544 345778899883
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=137.13 Aligned_cols=202 Identities=17% Similarity=0.336 Sum_probs=155.1
Q ss_pred EccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 010777 148 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 227 (501)
Q Consensus 148 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 227 (501)
.++.|-..|.++.=+|...+.+||+.||.|++|....+. ++.+.+. .+ ...|+.+.|+.+|+.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----------~v~~~rt-----~g-~s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----------QVVCFRT-----AG-NSRVTRSRFNHQGNKF 2266 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----------eEEEeec-----cC-cchhhhhhhcccCCce
Confidence 344566778899999999999999999999999986553 2333222 12 2568999999999999
Q ss_pred EEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEec---CCeEEEEeCCCcceeEeeeeccCCeEEEecC
Q 010777 228 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 228 ~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 304 (501)
..+..||.+.+|....+.....+.|......++|-. ..+++++. ++.+.+||..-..
T Consensus 2267 ~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~------------------ 2326 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP------------------ 2326 (2439)
T ss_pred eeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc------------------
Confidence 999999999999999777777888998888888865 44555543 5678888742110
Q ss_pred CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEE
Q 010777 305 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 384 (501)
Q Consensus 305 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i 384 (501)
....+. ..|.+.++++++-|..++|++||.+|.|++||++..+.++.++.
T Consensus 2327 --------------------~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------- 2376 (2439)
T KOG1064|consen 2327 --------------------MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------- 2376 (2439)
T ss_pred --------------------ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------
Confidence 001111 56889999999999999999999999999999998888777654
Q ss_pred EEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee
Q 010777 385 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 426 (501)
Q Consensus 385 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 426 (501)
+. . +.++++|+..|+|+||++.....++++.
T Consensus 2377 -~~--~--------~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 -LD--T--------REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -hh--h--------hheeeccCcccceEEEEccccchhhcCc
Confidence 11 1 1378999999999999998777666654
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.8e-10 Score=107.17 Aligned_cols=314 Identities=16% Similarity=0.297 Sum_probs=184.8
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC---
Q 010777 157 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--- 233 (501)
Q Consensus 157 ~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d--- 233 (501)
+-+.|||-|++|+|--.-| |.+|-=.+ .. .+.. -....|..+.|||..+||+|-+..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~-------------r~~R---F~Hp~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES---FD-------------RIQR---FYHPGVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc---HH-------------HHHh---ccCCCceeeecCCccceEEEecCCccc
Confidence 5689999999999987765 77894211 00 0000 113458999999999999997652
Q ss_pred --------CeEEEEECCC-ceeEeecC--CCCCEEE-EEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 234 --------GQARIWSTNG-DLKCTLSK--HKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 234 --------g~i~iw~~~~-~~~~~~~~--h~~~V~~-l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
..++|||+.. .+...|.. ....++- ..||.+++|++--.. .+|.||+.....+...-...-..+..+
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF 352 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence 4789999764 44445544 2333433 589999999886655 578899865533322111122234445
Q ss_pred ecCCCceEEE---ecCC---CeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE----------eCCCeEEEEeC
Q 010777 302 DWRNNVSFAT---SSTD---NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC----------SDDVTAKIWNM 365 (501)
Q Consensus 302 ~~~~~~~~~~---~~~d---~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~----------s~Dg~i~iwd~ 365 (501)
.|.+...+++ -..+ ..+.+..+...+.+++-.-|.-.=..+-|-.+|.+|+.- +.-..+.|+.+
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 5544322211 1111 123344444444444333232222345565666665432 11123556666
Q ss_pred CCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEe-CCCeEEEEeCCC-C---eEEEEeeCCCCCeEEEEECCC
Q 010777 366 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-G---KLLYSLNGHREPVYSLAFSPT 440 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~-~---~~~~~~~~h~~~v~~l~~spd 440 (501)
+..............|...+|-|.|. +..+++|- .-.++.+|.+.+ . +++..+. ....+.|.|+|.
T Consensus 433 reKdIpve~velke~vi~FaWEP~gd-------kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPk 503 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGD-------KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPK 503 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCC-------eEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCC
Confidence 55443322333456788999999986 23344443 245788887763 2 2233333 245788999999
Q ss_pred CCEEEEE---eCCCcEEEEeCCCCeeEEE-EecCCCEEEEEECCCCCEEEEEECCCe------EEEEEee
Q 010777 441 GEYLASG---SLDKSMHIWSLKEGKIVKT-YTGNGGIFEVCWNKEGDKIAACFANHT------VCVLDFR 500 (501)
Q Consensus 441 g~~lasg---s~Dg~i~iw~~~~~~~~~~-~~~~~~i~~~~ws~~g~~la~~~~d~~------v~v~~~~ 500 (501)
|+++|.+ |..|.+.++|..-..+..+ ...+...+.+-|.|.|+++++++.... -.+|+++
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999875 4578899999874332222 123445788999999999999976543 3555553
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=4.2e-08 Score=94.93 Aligned_cols=258 Identities=13% Similarity=0.236 Sum_probs=160.7
Q ss_pred CCeEEEEECCCCCEEEEEeC----CCeEEEEECCCc---e--eEeecCCCCCEEEEEecCCCCEEEEEe-cCCeEEEEeC
Q 010777 213 KDVTTLDWNGEGTLLATGSY----DGQARIWSTNGD---L--KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV 282 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~~----dg~i~iw~~~~~---~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~i~iwd~ 282 (501)
.....++++|++++|++... .+.|..|..... + .............++++|++.+|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34567889999999999877 468888876542 2 222222333446799999999988876 5899999999
Q ss_pred CC-cceeEee--eec-----------cCCeEEEecCCC--ceEEEecCCCeEEEEEcCCCcc-e---eeec-CCCCceeE
Q 010777 283 KT-EEWKQQF--EFH-----------SGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRP-I---KTFA-GHQGEVNC 341 (501)
Q Consensus 283 ~~-~~~~~~~--~~~-----------~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~-~---~~~~-~h~~~v~~ 341 (501)
.. +...... ..+ ......+.+.++ ..+++.-....|+++++..... + ..+. ........
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 4333321 111 122345556544 3344455556888888876541 2 1222 22345678
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEeCC--CCce--eeeccc------CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe
Q 010777 342 VKWDPTGSLL-ASCSDDVTAKIWNMK--QDKY--VHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 410 (501)
Q Consensus 342 v~~~~~~~~l-~s~s~Dg~i~iwd~~--~~~~--~~~~~~------~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~ 410 (501)
++|+|+++++ +++-.+++|.++++. .+.. +..+.. .......|+++|+|. .+.++.-..+.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--------~lyvsnr~~~s 268 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--------FLYVSNRGSNS 268 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--------EEEEEECTTTE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--------EEEEEeccCCE
Confidence 9999999876 455567889999887 3322 222111 112567889999886 45566667889
Q ss_pred EEEEeCC--CCe--EEEEeeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeC--CCCeeEEEE--ecCCCEEEEEE
Q 010777 411 VKLWDVE--LGK--LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEGKIVKTY--TGNGGIFEVCW 478 (501)
Q Consensus 411 i~iwd~~--~~~--~~~~~~~h~~~v~~l~~spdg~~lasgs-~Dg~i~iw~~--~~~~~~~~~--~~~~~i~~~~w 478 (501)
|.+|++. +++ .+..+.........++++|+|++|+++. .++.|.+|++ .+|.+...- ..-....++.|
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999983 333 3334443334478999999999998877 5678999976 577765443 22345667766
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.8e-10 Score=108.07 Aligned_cols=274 Identities=18% Similarity=0.291 Sum_probs=170.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecC-----------CeEEEEeCC
Q 010777 215 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----------KTAIVWDVK 283 (501)
Q Consensus 215 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----------~~i~iwd~~ 283 (501)
-+-+.|||.|.||+|--.-| |.+|-...-..+.--.|++ |.-+.|||..+||+|-|.- ..++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 46789999999999977654 7788644322222223654 6789999999999986631 579999999
Q ss_pred CcceeEeeeeccCCe---EEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCC---
Q 010777 284 TEEWKQQFEFHSGPT---LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD--- 357 (501)
Q Consensus 284 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D--- 357 (501)
+|...+.|....++. .-+.|..+..+.+.-.-.+|.+++...-.++..-.-.-..|....|+|.+.+||-=+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 999988887643322 23467666666666555778888764422111000112357778899998888743321
Q ss_pred --CeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEE----------EeCCCeEEEEeCCCCeEEEEe
Q 010777 358 --VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS----------ASFDSTVKLWDVELGKLLYSL 425 (501)
Q Consensus 358 --g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~s----------gs~dg~i~iwd~~~~~~~~~~ 425 (501)
..+.+-.+.+++.+++...+.-.-..+.|..+|. +|+. .+.-.++-|+.++........
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd---------yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD---------YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCc---------EEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 1345555555555544333332233455655554 3322 111224555555543322222
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEeCCC-C---eeEEEEecCCCEEEEEECCCCCEEEEE---ECCCeEE
Q 010777 426 NGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKE-G---KIVKTYTGNGGIFEVCWNKEGDKIAAC---FANHTVC 495 (501)
Q Consensus 426 ~~h~~~v~~l~~spdg~~lasgs~---Dg~i~iw~~~~-~---~~~~~~~~~~~i~~~~ws~~g~~la~~---~~d~~v~ 495 (501)
-.-+..|...+|-|.|..+++-+. -.++.+|.+++ . +++..+.. ...+.+.|+|.|.+++++ +..|.+.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceE
Confidence 224567899999999987765443 35789998873 2 34555544 346899999999988866 5578898
Q ss_pred EEEee
Q 010777 496 VLDFR 500 (501)
Q Consensus 496 v~~~~ 500 (501)
+||..
T Consensus 521 F~D~~ 525 (698)
T KOG2314|consen 521 FYDTD 525 (698)
T ss_pred EEecc
Confidence 88853
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=8.7e-11 Score=103.08 Aligned_cols=176 Identities=18% Similarity=0.289 Sum_probs=130.3
Q ss_pred EEEecCCCeEEEEEcCCCcceeeecCCC------CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--eeecccCCCC
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKE 380 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~--~~~~~~~~~~ 380 (501)
++.+...|.|.++..........+.+-. ....++.|++.+..++++-.+|.+.+-+...... ++..+.|.-+
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 3445566777777655443333333321 1346789999999999999999998655544433 3477889999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEE-eeCCCCCeEEEEECCC-CCEEEEEeCCCcEEEEe
Q 010777 381 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS-LNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWS 457 (501)
Q Consensus 381 v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~-~~~h~~~v~~l~~spd-g~~lasgs~Dg~i~iw~ 457 (501)
++...|+.... .++.+|+.|+.+..||++ .++.++. .+-|...|.+|.-||. +.+|+||+.|-.|++||
T Consensus 168 ~Wta~f~~~~p--------nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 168 AWTAKFSDKEP--------NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred eeeeecccCCC--------ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 99988876543 389999999999999999 4555655 5668889999988874 78999999999999999
Q ss_pred CCC-CeeEEEEecCCCEEEEEECCC--CCEEEEEECCC
Q 010777 458 LKE-GKIVKTYTGNGGIFEVCWNKE--GDKIAACFANH 492 (501)
Q Consensus 458 ~~~-~~~~~~~~~~~~i~~~~ws~~--g~~la~~~~d~ 492 (501)
.+. ++.+..-...++|+.+.|+|. +..||+|..+|
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcC
Confidence 984 566655555688999999996 45677777776
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=2.4e-08 Score=94.44 Aligned_cols=239 Identities=13% Similarity=0.130 Sum_probs=145.0
Q ss_pred ECCCCCEEEEEeC----------CCeEEEEECCCc-eeEeecCC-------CCCEEEEEecCCCCEEEEEe-c-CCeEEE
Q 010777 220 WNGEGTLLATGSY----------DGQARIWSTNGD-LKCTLSKH-------KGPIFSLKWNKKGDYLLTGS-C-DKTAIV 279 (501)
Q Consensus 220 ~s~~~~~l~sg~~----------dg~i~iw~~~~~-~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s-~-D~~i~i 279 (501)
+||||+.|+.+.. +..|.+||.... ....+.-- ...-..++++|+|++|+... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999999888766 789999998653 33333321 11234688999999998766 3 789999
Q ss_pred EeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCC-Ccc----eeeecCCCCce-eEEEEcC-CCCEEE
Q 010777 280 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRP----IKTFAGHQGEV-NCVKWDP-TGSLLA 352 (501)
Q Consensus 280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~----~~~~~~h~~~v-~~v~~~~-~~~~l~ 352 (501)
.|+.+++.+.++....+ ..-+...+.. +..-+.|+......+.. ++. ...|.+-..++ ..-.|.+ +|+++.
T Consensus 133 vD~~~~kvv~ei~vp~~-~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC-YHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCCC-cEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 99999998887765321 1111222222 22223334333322221 110 11111100000 0013455 788776
Q ss_pred EEeCCCeEEEEeCCCCc-----eeeeccc-------CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC--------CCeEE
Q 010777 353 SCSDDVTAKIWNMKQDK-----YVHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVK 412 (501)
Q Consensus 353 s~s~Dg~i~iwd~~~~~-----~~~~~~~-------~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~--------dg~i~ 412 (501)
.... |+|.+.|+.... ....+.. ..+...-++++|++. .++++.-.. .+.|.
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-------~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-------RIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-------EEEEEecCCccccccCCCCEEE
Confidence 6665 999999964332 2221111 112223366776664 233322111 25899
Q ss_pred EEeCCCCeEEEEeeCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCCeeEEEEec
Q 010777 413 LWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTG 469 (501)
Q Consensus 413 iwd~~~~~~~~~~~~h~~~v~~l~~spdg~-~lasgs-~Dg~i~iw~~~~~~~~~~~~~ 469 (501)
++|..+++.+..+.- ...+..|+|+||++ +|++.. .++.|.++|..+++.++++..
T Consensus 283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 999999999988763 34789999999999 777665 578899999999999998844
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=3.7e-10 Score=108.32 Aligned_cols=209 Identities=18% Similarity=0.252 Sum_probs=142.8
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCC----CCceEEEEEeeccccccCCCCeEEEE----ECCCCCEEEEEeCC
Q 010777 162 SPAGSLLASGSGDSTARIWTIADGTSNGGAQN----GPLNVLVLKHVKGRTNEKSKDVTTLD----WNGEGTLLATGSYD 233 (501)
Q Consensus 162 sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~V~~~~----~s~~~~~l~sg~~d 233 (501)
.|-+.++|....||.+|||+...++.....+. .....+....+...+ .....+++. -+.+-..++-|...
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~--s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADY--SPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEecc--chHHHHhHHHHhhccCCceEEEeecCC
Confidence 34567899999999999999876643211110 000000000000000 000011111 13455678889999
Q ss_pred CeEEEEECCC-ceeEee--cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEE
Q 010777 234 GQARIWSTNG-DLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 310 (501)
Q Consensus 234 g~i~iw~~~~-~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
|.|.+|++.+ +....+ .+|.+.|.++.++.+-..|.|++.|+.+..|++.....+
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~---------------------- 137 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII---------------------- 137 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee----------------------
Confidence 9999999765 444444 479999999999999999999999999999998776432
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCC
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 390 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g 390 (501)
++|. +....+.+++++|||+.+++++ ++|++||+.+++.+..|.+|.++|.++.|.-.-
T Consensus 138 --------~~~~-----------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 138 --------RIWK-----------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred --------eeec-----------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 2232 2233467899999999999886 589999999999999999999999999997661
Q ss_pred CCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 391 SGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 391 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
. ...+.++|.+...+..|.+|-++.
T Consensus 197 ~---g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 D---GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c---ccccceeeeccccccceeEEEEEc
Confidence 1 112345777777888888886653
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.33 E-value=1.5e-08 Score=99.67 Aligned_cols=293 Identities=14% Similarity=0.133 Sum_probs=176.5
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-
Q 010777 164 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN- 242 (501)
Q Consensus 164 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~- 242 (501)
.+..++.++.++.|.-+|..+|+....... .... .. ... .++..++.++.++.+..+|..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-----------~~~~---~~---~p~--v~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDL-----------DERL---SG---GVG--ADGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecC-----------CCCc---cc---ceE--EcCCEEEEEcCCCEEEEEECCC
Confidence 367888888999999999888764321111 0000 00 111 246678888899999999974
Q ss_pred CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeE-----EEecCCCceEEEecCCCe
Q 010777 243 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-----DVDWRNNVSFATSSTDNM 317 (501)
Q Consensus 243 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~ 317 (501)
++....... .+.+.+.-.. .+..++.++.++.+..||+++++.+-.+........ .....+ ..++.+..++.
T Consensus 125 G~~~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~ 201 (377)
T TIGR03300 125 GKELWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGK 201 (377)
T ss_pred CcEeeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCE
Confidence 554443322 1222211111 245778888899999999999887655543221110 000112 34566677888
Q ss_pred EEEEEcCCCcceeeecCCC--C-----c---e-eEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEE
Q 010777 318 IYVCKIGENRPIKTFAGHQ--G-----E---V-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 386 (501)
Q Consensus 318 i~~~~~~~~~~~~~~~~h~--~-----~---v-~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 386 (501)
++.++..+++.+-...... + . + .+..+ .+..++.++.+|.+..||..+++.+...... .......
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~ 277 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV 277 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE
Confidence 9888887776543322100 0 0 0 11111 2457777888999999999988766543211 0011111
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCC-CeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEE
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 465 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~ 465 (501)
.+ + .+..++.+|.|..+|..+++.++....... ...+... .+..|++++.+|.|++++..+|+++.
T Consensus 278 --~~-------~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 278 --DD-------N--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred --eC-------C--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 11 1 455677899999999999998876632211 1222222 36688999999999999999999998
Q ss_pred EEecCC-CE-EEEEECCCCCEEEEEECCCeEEEE
Q 010777 466 TYTGNG-GI-FEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 466 ~~~~~~-~i-~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
.+.... .+ .+.++ .++.|..++.||.|..|
T Consensus 345 ~~~~~~~~~~~sp~~--~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGSGIASPPVV--VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCCccccCCEE--ECCEEEEEeCCceEEEe
Confidence 887544 22 22222 23468889999988654
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.33 E-value=3.6e-09 Score=113.29 Aligned_cols=273 Identities=14% Similarity=0.249 Sum_probs=171.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEE----ECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcce
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIW----STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 287 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 287 (501)
...|.++.|-++...++.+..+|.|.+. +...........-...|.+++||||+..|+....++++.+-+ ++.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence 4679999999999999999999999999 544443333333457899999999999999999899988774 34444
Q ss_pred eEeeeecc-----CCeEEEecCCC-ceEEEecCCCeEEEEEcCC-Ccc---eeeecCCCCceeEEEEcCCCCEEEEEeC-
Q 010777 288 KQQFEFHS-----GPTLDVDWRNN-VSFATSSTDNMIYVCKIGE-NRP---IKTFAGHQGEVNCVKWDPTGSLLASCSD- 356 (501)
Q Consensus 288 ~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~-~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~s~- 356 (501)
+.....+. .....+.|-.. ..|=.+.....-+ .... ..+ ...+. +...-..++|..||.+||+.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~--~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR--QLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhh--hccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 43333222 12233444221 1111000000000 0000 000 01122 3345568999999999998875
Q ss_pred --C---CeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC---CCeEEEEeCCCCeEEEEe---
Q 010777 357 --D---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSL--- 425 (501)
Q Consensus 357 --D---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~--- 425 (501)
. ..||||+-. |....+-..-.+--.+++|.|.|. ++|+.-. ...|.+|. ++|-....+
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~---------lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~ 299 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN---------LIASSQRLPDRHDVVFFE-RNGLRHGEFTLR 299 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------EEEEEEEcCCCcEEEEEe-cCCcEeeeEecC
Confidence 3 479999854 544333333334446789999996 6666543 34566665 334333222
Q ss_pred -eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--EEEE--ecCCCEEEEEECCC-CCEEEEEECCCeEEEEEe
Q 010777 426 -NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTY--TGNGGIFEVCWNKE-GDKIAACFANHTVCVLDF 499 (501)
Q Consensus 426 -~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~--~~~~--~~~~~i~~~~ws~~-g~~la~~~~d~~v~v~~~ 499 (501)
......|..|+|++|+..||..-.|. |.+|...+..- .+.+ .....+..+.|+|. ...|.....+|.+..+++
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 23456799999999999999977665 99999888652 2223 33344556999995 467888888788877765
Q ss_pred e
Q 010777 500 R 500 (501)
Q Consensus 500 ~ 500 (501)
.
T Consensus 379 ~ 379 (928)
T PF04762_consen 379 A 379 (928)
T ss_pred E
Confidence 3
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.32 E-value=1.7e-08 Score=108.18 Aligned_cols=319 Identities=14% Similarity=0.287 Sum_probs=195.8
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEE----ecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEE
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIW----TIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 227 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 227 (501)
..+.|.++.|-++...|+.+..+|.|.+. +..+.. ...... -...|.+++||||+..|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-----------~E~VG~-------vd~GI~a~~WSPD~Ell 135 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-----------IEIVGS-------VDSGILAASWSPDEELL 135 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-----------eEEEEE-------EcCcEEEEEECCCcCEE
Confidence 34679999999999988888899999988 332211 111111 24569999999999999
Q ss_pred EEEeCCCeEEEEECCC------------------------ceeEeecC------------------------CCCCEEEE
Q 010777 228 ATGSYDGQARIWSTNG------------------------DLKCTLSK------------------------HKGPIFSL 259 (501)
Q Consensus 228 ~sg~~dg~i~iw~~~~------------------------~~~~~~~~------------------------h~~~V~~l 259 (501)
+....++++.+.+.+- +....|.| +...-..+
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I 215 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI 215 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence 9999999888764210 00111111 11133568
Q ss_pred EecCCCCEEEEEec------CCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecC----CCeEEEEEcCCCcce
Q 010777 260 KWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST----DNMIYVCKIGENRPI 329 (501)
Q Consensus 260 ~~~~~~~~l~s~s~------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~~~~~~~~~~~ 329 (501)
+|..||.||++.+- -+.+|||+- .|.+..+-+...+--..+.|++...++++.. ...|.+|... +-..
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrh 293 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRH 293 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEe
Confidence 89999999988764 257999984 4665554443344445678987776665543 2334444332 2222
Q ss_pred eee----cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--eecccC-CCCEEEEEEcCCCCCCCCCCCcEEE
Q 010777 330 KTF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREH-SKEIYTIRWSPTGSGTNNPNQQLIL 402 (501)
Q Consensus 330 ~~~----~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~-~~~v~~i~~~p~g~~~~~~~~~~~l 402 (501)
..| ......|..+.|++|+..||..-.|. |.+|-..+-... +.+... ...+..+.|+|... +.|
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p--------~~L 364 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP--------LRL 364 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC--------CEE
Confidence 222 23456789999999999999887665 999976654321 223221 22344488888643 233
Q ss_pred EEEeCCCeEEEEeC----CCC--------eEEEEee-----------------------CCCCCeEEEEECCCCCEEEEE
Q 010777 403 ASASFDSTVKLWDV----ELG--------KLLYSLN-----------------------GHREPVYSLAFSPTGEYLASG 447 (501)
Q Consensus 403 ~sgs~dg~i~iwd~----~~~--------~~~~~~~-----------------------~h~~~v~~l~~spdg~~lasg 447 (501)
...+.+|.+..+++ ..+ ..+..+. ....+|.+++|++++..+|+-
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 34444455544332 111 1111111 124679999999999889999
Q ss_pred eCCCcEEEEeCCCCe--------eEEEEe-----------cCCCEEEEEECCCCCEEEEEECC---CeEEEEEe
Q 010777 448 SLDKSMHIWSLKEGK--------IVKTYT-----------GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 499 (501)
Q Consensus 448 s~Dg~i~iw~~~~~~--------~~~~~~-----------~~~~i~~~~ws~~g~~la~~~~d---~~v~v~~~ 499 (501)
..||.|.+|...... +...+. ....+..++|-.+...++....+ ..+.++++
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 999999999854321 111111 12346788998888776666554 45566554
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=3.4e-09 Score=115.59 Aligned_cols=249 Identities=12% Similarity=0.115 Sum_probs=159.4
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCceeEeecC--C------------CCCEEEEEecCCCCEEEEEe-cCCeEEE
Q 010777 216 TTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSK--H------------KGPIFSLKWNKKGDYLLTGS-CDKTAIV 279 (501)
Q Consensus 216 ~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~--h------------~~~V~~l~~~~~~~~l~s~s-~D~~i~i 279 (501)
..+++++ ++.++++-+.++.|++|+..+.....+.+ . -..-.++++.++++.|+.+. ....|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 3577876 46677777888999999988765544332 1 01247888998888666554 4567888
Q ss_pred EeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCc--ceeeecCCCCceeEEEEcC-CCCEEEEEeC
Q 010777 280 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSD 356 (501)
Q Consensus 280 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~-~~~~l~s~s~ 356 (501)
+|+.++. +.++.... ..+. +...+. .... -.....++++| ++.++++.+.
T Consensus 651 id~~~~~-V~tlag~G------------------~~g~----~~~gg~~~~~~~----ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 651 IDFVNET-VRTLAGNG------------------TKGS----DYQGGKKGTSQV----LNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred EecCCCE-EEEEeccC------------------cccC----CCCCChhhhHhh----cCCCeEEEEecCCCeEEEEECC
Confidence 8876653 22221100 0000 000000 0000 11234789999 5677788888
Q ss_pred CCeEEEEeCCCCceeeecccC---------------CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE
Q 010777 357 DVTAKIWNMKQDKYVHDLREH---------------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 421 (501)
Q Consensus 357 Dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 421 (501)
++.|++||..++... .+.+. -.....++++|++. .++++-+.++.|++||+.++..
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--------~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--------ELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCC--------EEEEEECCCCeEEEEECCCCcE
Confidence 999999998765432 11110 11234577777764 3556667789999999987653
Q ss_pred EEEeeC-------------C--------CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC----------
Q 010777 422 LYSLNG-------------H--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---------- 470 (501)
Q Consensus 422 ~~~~~~-------------h--------~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~---------- 470 (501)
.....+ + ...-..++|+++|.++++-+.+++|++||..++.+.......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 221110 0 012358999999999999999999999999887765332110
Q ss_pred ----CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 471 ----GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 471 ----~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
..+..++++++|+.+++-..|++|++||++
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 135789999999999999999999999974
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.5e-09 Score=106.02 Aligned_cols=223 Identities=18% Similarity=0.349 Sum_probs=152.5
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.+|.||+.+|..+.|+.+.+.|-|...+|.|.+|-+..+....... .+....-|.+++|+.||..
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi---------------NnRnKSvV~SmsWn~dG~k 129 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI---------------NNRNKSVVVSMSWNLDGTK 129 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh---------------hCcCccEEEEEEEcCCCcE
Confidence 5799999999999999999999999999999999987764321100 1122456899999999999
Q ss_pred EEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc-------e-eE---eeee
Q 010777 227 LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-------W-KQ---QFEF 293 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~-------~-~~---~~~~ 293 (501)
+.....||.|.|=.++|.... .+.+ .-...+.|+++...++.+-..|.+.+||.+..- + +. .+..
T Consensus 130 IcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~ 207 (1189)
T KOG2041|consen 130 ICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN 207 (1189)
T ss_pred EEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence 999999999988777665332 1222 122467899999999999999999999865321 1 00 0000
Q ss_pred ccCCeEEEecC---------CCceEEEecCCCeEEEEEcCC-CcceeeecCCCCceeEEEEcCCCCEEEEEeCCC-----
Q 010777 294 HSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----- 358 (501)
Q Consensus 294 ~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg----- 358 (501)
....+..+.|. +...++.+..+|.+.+..-.. ..|+..-.| -.+..+.|+++|..||.|+.+.
T Consensus 208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence 00112334442 234678888888877765432 334332222 4678899999999999998753
Q ss_pred ----eEEEEeCCCCceeeecccCCCCEEEEEEcCC
Q 010777 359 ----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 389 (501)
Q Consensus 359 ----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~ 389 (501)
.|.+|.. -|..+.+++.....|++++|-..
T Consensus 286 ~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 286 TDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred cccceEEEecc-chhheEEEecCCceeeeeEEcCC
Confidence 4566643 35566677777777888777543
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.4e-11 Score=130.80 Aligned_cols=245 Identities=17% Similarity=0.289 Sum_probs=176.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeecc-CCeEEE
Q 010777 223 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDV 301 (501)
Q Consensus 223 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~ 301 (501)
.++.+.....++...-|...+.-. .+..+-..|.++.-||...+.+||+.||.+++|....+..+..++... ..+...
T Consensus 2179 ~s~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred ccccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 344455555566666565544322 334455678888889999999999999999999887776665554332 223333
Q ss_pred ec-CCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe---CCCeEEEEeCCC---Cceeeec
Q 010777 302 DW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ---DKYVHDL 374 (501)
Q Consensus 302 ~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---~Dg~i~iwd~~~---~~~~~~~ 374 (501)
.| .....|..+..||.+-+|... +++......|......+.|-. ..+++++ .++.+.+||..- ..+++
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--
Confidence 44 355678888899999999987 677778888988888888864 5666654 567899999642 22344
Q ss_pred ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010777 375 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 375 ~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
..|.+.++++++.|... +|++|+.+|.|++||++..+.++.+.. ++ ...++++|+..|.|+
T Consensus 2333 ~~H~~gaT~l~~~P~~q---------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQ---------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred eecCCCceEEEEcCcce---------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 67999999999999865 789999999999999998777766553 44 567999999999999
Q ss_pred EEeCCCCeeEEEEecCCCEEEEEECC--------CCCEEEEEECCCe
Q 010777 455 IWSLKEGKIVKTYTGNGGIFEVCWNK--------EGDKIAACFANHT 493 (501)
Q Consensus 455 iw~~~~~~~~~~~~~~~~i~~~~ws~--------~g~~la~~~~d~~ 493 (501)
||++..-.++.+++....=.++ |.. .+++|.+|+.||+
T Consensus 2394 Iw~~s~~~ll~~~p~e~ak~gf-Fr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPSEHAKQGF-FRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred EEEccccchhhcCchhhcccch-hhhcCceeeeccCceEEEecCCCC
Confidence 9999988888887653211111 222 2457777777763
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=1.2e-09 Score=96.06 Aligned_cols=233 Identities=18% Similarity=0.291 Sum_probs=147.7
Q ss_pred CEEEEEecC---CCC-EEEEEecCCeEEEEeCCCcceeEeeeecc------CCeEEEecCC-CceEEEecCCCeEEEEEc
Q 010777 255 PIFSLKWNK---KGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS------GPTLDVDWRN-NVSFATSSTDNMIYVCKI 323 (501)
Q Consensus 255 ~V~~l~~~~---~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~d~~i~~~~~ 323 (501)
.++.+.|.. +|. .++-+..+|.|.++-.....-...+..-. ....+++|.. ...++++-.+|.+.+.+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 344455542 233 35566677888888544332222222111 1134556643 345666667777765444
Q ss_pred CCCc--ceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCC-CCceeee-cccCCCCEEEEEEcCCCCCCCCCCC
Q 010777 324 GENR--PIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK-QDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQ 398 (501)
Q Consensus 324 ~~~~--~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~-~~~~~~~-~~~~~~~v~~i~~~p~g~~~~~~~~ 398 (501)
.... .++.+++|.-++..+.|+... +++.+|++|+.+..||++ .++++.. .+.|...|.+|.-+|.-
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~-------- 222 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPK-------- 222 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCC--------
Confidence 3332 344778999999999997654 588999999999999998 4444433 55677888888877653
Q ss_pred cEEEEEEeCCCeEEEEeCC-CCeEEEEeeCCCCCeEEEEECCCC--CEEEEEeCCCcEEEEeCCCCee-----EEEEecC
Q 010777 399 QLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKEGKI-----VKTYTGN 470 (501)
Q Consensus 399 ~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spdg--~~lasgs~Dg~i~iw~~~~~~~-----~~~~~~~ 470 (501)
..++++|+.|-+|++||.+ -+++++.-+ -.+.|+.+.++|.- ..|+++=..| .+|-+...+.. ..+...+
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h 300 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH 300 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc
Confidence 2489999999999999999 466665543 34789999999964 3455554554 56666554322 2222333
Q ss_pred C-CEEEEEECCCCCEEEEE-ECCCeE-EEE
Q 010777 471 G-GIFEVCWNKEGDKIAAC-FANHTV-CVL 497 (501)
Q Consensus 471 ~-~i~~~~ws~~g~~la~~-~~d~~v-~v~ 497 (501)
. -.+.-.|......||+| +.|+.+ .+|
T Consensus 301 dSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 301 DSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cceeeccccccccceeeeeeccccceeeee
Confidence 2 36777786666789987 446663 355
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.24 E-value=3.3e-09 Score=100.00 Aligned_cols=264 Identities=16% Similarity=0.223 Sum_probs=160.0
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCC---------------
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--------------- 275 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--------------- 275 (501)
..-++..++|||.|.+|++.... .|.+|.....-......| ..|.-+.|+|.++||.+-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 35678899999999999987664 578887654323322234 4589999999999999976543
Q ss_pred eEEEEeCCCcceeEeeeeccCC--eE-EEecCCCceEEEecCCCeEEEEEcCCCc---ceeeecCCCCceeEEEEcCCCC
Q 010777 276 TAIVWDVKTEEWKQQFEFHSGP--TL-DVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGS 349 (501)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~v~~v~~~~~~~ 349 (501)
.+.+||..++.++..+.....+ .. -+.|..+..+++=--...++++++..+. +...++ ...|....|+|-++
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCC
Confidence 3899999999988887765554 11 2334332222221123456777753221 122221 24577788888643
Q ss_pred --EEE-----EEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEE--------eCCCeEEEE
Q 010777 350 --LLA-----SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA--------SFDSTVKLW 414 (501)
Q Consensus 350 --~l~-----s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sg--------s~dg~i~iw 414 (501)
.|| ..+.+++++||.+..++.+.+.....-.-..+.|.+.|... ++++-- -...++.|+
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~l------l~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYL------LVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceE------EEEEEEeeecccceeccceEEEE
Confidence 333 25678899999987666554332222333567888877521 011110 013567888
Q ss_pred eCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEE
Q 010777 415 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 487 (501)
Q Consensus 415 d~~~~~~~~~~~~h~~~v~~l~~spdg~~lasg--s~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~ 487 (501)
++....+.... ...++|...+|.|.++.+++. -.+..+-+++++.. +...++ .+.=..+.|||.+++++.
T Consensus 261 ~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-e~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 261 RITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-EQKRNTIFFSPHERYILF 332 (561)
T ss_pred eecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-CcccccccccCcccEEEE
Confidence 87743333232 567899999999998876654 47888999998754 333322 222234445555554443
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2e-11 Score=115.47 Aligned_cols=208 Identities=19% Similarity=0.338 Sum_probs=143.4
Q ss_pred eEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCC
Q 010777 246 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 325 (501)
Q Consensus 246 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 325 (501)
.+.+.+|+..|..+.--.+.+.|++++.|++|++|.++...- .+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------------------------------~~~t 773 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------------------------------EIGT 773 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------------------------------cccc
Confidence 456789999888887777778899999999999998864310 0111
Q ss_pred CcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc--CCCCEEEEEEcCCCCCCCCCCCcEEEE
Q 010777 326 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILA 403 (501)
Q Consensus 326 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~p~g~~~~~~~~~~~l~ 403 (501)
..+..++..|..+|..+.|-.+.++++++ ||.|++||.--++++..+.. ..+.+..+..-|+- +...+++
T Consensus 774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv------~~~iliA 845 (1034)
T KOG4190|consen 774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV------DRHILIA 845 (1034)
T ss_pred ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccC------cchheee
Confidence 22345677899999999999898888776 88999999877766554321 11222223222321 1234566
Q ss_pred EEeCCCeEEEEeCCCCeEEEEee-----CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCC-EEEEE
Q 010777 404 SASFDSTVKLWDVELGKLLYSLN-----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVC 477 (501)
Q Consensus 404 sgs~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~-i~~~~ 477 (501)
.++...+|+++|.+.+.-..+++ +-..-+.+++..|.|++||.|=..|.|.+.|.++|+++..+..... ..-++
T Consensus 846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 66889999999999876554443 2334588999999999999999999999999999999887754321 22221
Q ss_pred ECCCCCEEEEEECCCeEEE
Q 010777 478 WNKEGDKIAACFANHTVCV 496 (501)
Q Consensus 478 ws~~g~~la~~~~d~~v~v 496 (501)
-|..+.||....|.++.|
T Consensus 926 -apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 926 -APSDQALAQSALDHSLAV 943 (1034)
T ss_pred -CchhHHHHhhcccceeEe
Confidence 234445555555555555
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=2.2e-07 Score=87.95 Aligned_cols=244 Identities=11% Similarity=0.080 Sum_probs=142.9
Q ss_pred CeEEEEECCCce-eEeecCCCCCEEEEEecCCCCEEEEEec----------CCeEEEEeCCCcceeEeeeeccCCe----
Q 010777 234 GQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSC----------DKTAIVWDVKTEEWKQQFEFHSGPT---- 298 (501)
Q Consensus 234 g~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------D~~i~iwd~~~~~~~~~~~~~~~~~---- 298 (501)
+.|.+.|..... ...+..-..+- .+ ++|+++.|+.+.. +..|.+||+.+.+.+..+.....|-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999976543 34444333332 34 8999999887766 7899999999999887776432211
Q ss_pred ---EEEecCC--CceEEEecC-CCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE--------eCCCeEEEEe
Q 010777 299 ---LDVDWRN--NVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC--------SDDVTAKIWN 364 (501)
Q Consensus 299 ---~~~~~~~--~~~~~~~~~-d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~--------s~Dg~i~iwd 364 (501)
..+.+.+ ...++..-. ++.+.+.|+...+.+..+.- |++.+++.. +.||......
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEE
Confidence 1222322 233334423 77788888877776665432 333333222 2233333222
Q ss_pred CCC-Cce-eeecc-cCC--CCEEE-EEEcC-CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-----eEEEEeeC-----
Q 010777 365 MKQ-DKY-VHDLR-EHS--KEIYT-IRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG-----KLLYSLNG----- 427 (501)
Q Consensus 365 ~~~-~~~-~~~~~-~~~--~~v~~-i~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-----~~~~~~~~----- 427 (501)
+.. ++. ..... .+. .++.. -.|.+ +| ..+++|. .|+|.+.|+... .....+..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg--------~~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG--------RLVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCC--------cEEEEec--CCeEEEEecCCCcceecceeeecccccccc
Confidence 211 110 00000 000 00000 01222 33 2344433 399999996432 22222211
Q ss_pred --CCCCeEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCC-EEEEEE-CCCe
Q 010777 428 --HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAACF-ANHT 493 (501)
Q Consensus 428 --h~~~v~~l~~spdg~~lasgs~----------Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~-~la~~~-~d~~ 493 (501)
..+.+.-++++|+++.|..+.. .+.|.++|..+++.+..+.....+..++++|||+ +|.+.. .++.
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc
Confidence 1233445999999988776431 2579999999999999988777899999999999 777665 5788
Q ss_pred EEEEEee
Q 010777 494 VCVLDFR 500 (501)
Q Consensus 494 v~v~~~~ 500 (501)
|.|+|..
T Consensus 324 VsViD~~ 330 (352)
T TIGR02658 324 LYIFDAE 330 (352)
T ss_pred EEEEECc
Confidence 9999963
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=2.7e-08 Score=108.72 Aligned_cols=266 Identities=11% Similarity=0.105 Sum_probs=159.3
Q ss_pred eEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccc-cccCCCCeEEEEECCCCCEEEEEe-CC
Q 010777 157 CACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGS-YD 233 (501)
Q Consensus 157 ~~~~~sp~-~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l~sg~-~d 233 (501)
..+++++. +.++++-+..+.|++||............+.... ..+. ....-..-..+++.+++..|+.+. .+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~-----~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL-----RDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC-----CCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 46788875 6677777888999999975321100000000000 0000 000112346788999888666554 45
Q ss_pred CeEEEEECCCceeEeecCC-----------------CCCEEEEEecC-CCCEEEEEecCCeEEEEeCCCcceeEeeeecc
Q 010777 234 GQARIWSTNGDLKCTLSKH-----------------KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 295 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h-----------------~~~V~~l~~~~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 295 (501)
+.|++++..+....++.+- -..-+.++|+| ++..+++.+.++.|++||..++... .+..
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G-- 722 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG-- 722 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec--
Confidence 7899998766555444221 01236789999 4556677778899999998765421 1110
Q ss_pred CCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeeec
Q 010777 296 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL 374 (501)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~ 374 (501)
++.....+ +.. .....-.....++++|+++ ++++-+.++.|++||+.++......
T Consensus 723 -------------------~G~~~~~~---g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 723 -------------------DGYERNLN---GSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred -------------------CCccccCC---CCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 01000000 000 0001112456799999988 5667777899999998865421100
Q ss_pred c-------------cC--------CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee-------
Q 010777 375 R-------------EH--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------- 426 (501)
Q Consensus 375 ~-------------~~--------~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~------- 426 (501)
. .. ......++++++|. ++++-+.++.|++||..++.......
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence 0 00 01124566666663 56677789999999998776543221
Q ss_pred ------CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 427 ------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 427 ------~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
+.......|+++++|+++++-+.+++|++|++.+++.
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112467899999999999999999999999998865
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1.5e-09 Score=97.48 Aligned_cols=238 Identities=14% Similarity=0.259 Sum_probs=158.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-Ccee-Ee-ecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeC----
Q 010777 210 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLK-CT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV---- 282 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~-~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~---- 282 (501)
++...|+....-|...-+++.+.|.++|||-.. .... .. ...-..+++++.+++....|+.|-..|++.-+.+
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 445556666666777789999999999999532 2111 11 1224567899999999999999999999988854
Q ss_pred CCcceeEeeeeccCCeEEEecCCC-ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEE
Q 010777 283 KTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 361 (501)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~ 361 (501)
+.....+.+..|...+..+-|.-. ..+++.+.|..+.---...+..+-.+. -....+++.+.-. +...|...|.|.
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqvt 178 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDHSGQIT 178 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEecccccceE
Confidence 445566677778888877776533 334444444433211111111111000 0001111222111 344455556555
Q ss_pred EEeC--CCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEeeCCCCCeEEEEEC
Q 010777 362 IWNM--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFS 438 (501)
Q Consensus 362 iwd~--~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~s 438 (501)
+-.+ ..-..+.++.+|...+++++|.|... +|.+|..|..+.+||+.-.+ ..+++.+|...|..+.+-
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~---------~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR---------LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred EEEEeecCCceEEEEcCcccceEEEEEcCCCc---------EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 5433 33456778899999999999998764 89999999999999987544 346788999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 010777 439 PTGEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 439 pdg~~lasgs~Dg~i~iw~~~ 459 (501)
+--+.|.+++.||.|.+|+..
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhheeeeeccCCCeEEEEecc
Confidence 888999999999999999864
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.6e-07 Score=84.35 Aligned_cols=259 Identities=14% Similarity=0.192 Sum_probs=164.4
Q ss_pred CCeEEEEECCCc----eeEeecCCCCCEEEEEecCCCCEEEEEecC---CeEEEEeCC--Cccee--EeeeeccCCeEEE
Q 010777 233 DGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVK--TEEWK--QQFEFHSGPTLDV 301 (501)
Q Consensus 233 dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~i~iwd~~--~~~~~--~~~~~~~~~~~~~ 301 (501)
+..|++|++... ....+..+.+..+-|+|+|++++|+++..+ |.|..|.+. .|.+. ........+..-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999987632 112334566777889999999999988765 566665544 35432 2222223333445
Q ss_pred ecCCCc--eEEEecCCCeEEEEEcCCCccee---eecCCCCc----------eeEEEEcCCCCEEEEEeC-CCeEEEEeC
Q 010777 302 DWRNNV--SFATSSTDNMIYVCKIGENRPIK---TFAGHQGE----------VNCVKWDPTGSLLASCSD-DVTAKIWNM 365 (501)
Q Consensus 302 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~---~~~~h~~~----------v~~v~~~~~~~~l~s~s~-Dg~i~iwd~ 365 (501)
+...+. .|++....+.|.++.++..-.+. ....|.+. +.+..+.|++++|+++.- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 554443 44555667889999886532211 22234443 778999999999887753 236899999
Q ss_pred CCCceeee---cccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeC---------CCCCe
Q 010777 366 KQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNG---------HREPV 432 (501)
Q Consensus 366 ~~~~~~~~---~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~---------h~~~v 432 (501)
..++.... .......-..|.|+|++. +.-+..--+++|-+|.+... ..+..+.. -....
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k--------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGK--------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCc--------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 86654321 112333456788888876 33445667899999998763 22222221 12356
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEeCCC--Cee--EEEEecCCC-EEEEEECCCCCEEEEEECC-CeEEEEEe
Q 010777 433 YSLAFSPTGEYLASGSL-DKSMHIWSLKE--GKI--VKTYTGNGG-IFEVCWNKEGDKIAACFAN-HTVCVLDF 499 (501)
Q Consensus 433 ~~l~~spdg~~lasgs~-Dg~i~iw~~~~--~~~--~~~~~~~~~-i~~~~ws~~g~~la~~~~d-~~v~v~~~ 499 (501)
.+|..+|||+||.++.. ...|.+|.+.. |++ +.....++. ..++.+++.|++|+++..+ .+|.||-.
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 78999999999988753 34788888753 443 333344444 7899999999999988764 46788754
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.5e-10 Score=109.80 Aligned_cols=290 Identities=18% Similarity=0.274 Sum_probs=187.0
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCC-CCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT-SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 224 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 224 (501)
...+.||+..|++++--.+.+-++++|.|.+|++|.+.... ..++ ..+.-.+..|.++|.++.|-.+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------saCQfTY~aHkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------SACQFTYQAHKKPIHDIGFLADL 796 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------ceeeeEhhhccCcccceeeeecc
Confidence 34578999999998877778889999999999999985321 1111 01222445678899999999998
Q ss_pred CEEEEEeCCCeEEEEECC-CceeE-e--ecCC--CCCEEEEEecCCCCEEEEE-ecCCeEEEEeCCCcceeEeeeeccCC
Q 010777 225 TLLATGSYDGQARIWSTN-GDLKC-T--LSKH--KGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGP 297 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~-~~~~~-~--~~~h--~~~V~~l~~~~~~~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~~ 297 (501)
+++++ .||.|.+||.- +.... . -..| .+.|.++. +-+.+.+++| +...+|+++|.+..+|...+....
T Consensus 797 r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-- 871 (1034)
T KOG4190|consen 797 RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-- 871 (1034)
T ss_pred ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc--
Confidence 88875 47899999953 22211 1 1122 23344432 1133444444 778999999999988776554211
Q ss_pred eEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccC
Q 010777 298 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 377 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 377 (501)
-.+..+.+.+++..+.|+.++.+-..|.|.+.|.++++.+...+..
T Consensus 872 ----------------------------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 872 ----------------------------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred ----------------------------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 1223456788999999999999999999999999999988766544
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEE-EeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEE
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL-WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 456 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw 456 (501)
......++- |... .|+....|.++.+ |....+...+..+.-..+..-+ -.-|.-|+++.....+.+|
T Consensus 918 ecdllqlaa-psdq---------~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 918 ECDLLQLAA-PSDQ---------ALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred cchhhhhcC-chhH---------HHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEE
Confidence 333222221 2221 4666667888888 9877777766665433221111 1235667777766677777
Q ss_pred eCCCC-e------eEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 457 SLKEG-K------IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 457 ~~~~~-~------~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
--... . .++.-+-.+..++++--|-+.-+.+|...|.|.+.
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceeec
Confidence 42110 0 11111223456788888888878888888887753
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1.7e-09 Score=95.73 Aligned_cols=267 Identities=20% Similarity=0.404 Sum_probs=166.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCce------eEeecCCCC------------CEEEEEecCCC--CEEEEE
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKG------------PIFSLKWNKKG--DYLLTG 271 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~------~~~~~~h~~------------~V~~l~~~~~~--~~l~s~ 271 (501)
...|+++.|...|.||++|...|.|.++..+... ...|++|.. .|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568999999999999999999999999754322 234566642 46778887654 357777
Q ss_pred ecCCeEEEEeCCCcceeEe--------eee-ccCCeEEEecCCCceEE-EecCCCeEEEEEcCCCcceeee-cCCCCcee
Q 010777 272 SCDKTAIVWDVKTEEWKQQ--------FEF-HSGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 340 (501)
Q Consensus 272 s~D~~i~iwd~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~ 340 (501)
+.|++|++|-+....+.-. +.. ..+++.+..- ..+- .+.-|..|. ..|.+.+ ..|...|+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iia------a~p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIA------AKPCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH---hhcccccccceEEE------eccceeccccceeEee
Confidence 7899999998865432111 100 0112211100 0000 000111111 1233344 46888899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eeecccC-----CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEE
Q 010777 341 CVKWDPTGSLLASCSDDVTAKIWNMKQDKY---VHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 412 (501)
Q Consensus 341 ~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 412 (501)
++.++.|...++++ +|-.|.+|++.--.. +..++.| ...|++..|+|... +++...+..|.|+
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--------n~fmYSsSkG~Ik 247 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--------NVFMYSSSKGEIK 247 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--------ceEEEecCCCcEE
Confidence 99999998888765 677899998753211 1122222 23455666666543 4667778899999
Q ss_pred EEeCCCCe------EEEEe--e--------CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eeEEEEec------
Q 010777 413 LWDVELGK------LLYSL--N--------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KIVKTYTG------ 469 (501)
Q Consensus 413 iwd~~~~~------~~~~~--~--------~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~-~~~~~~~~------ 469 (501)
+-|++... .++.. . +-...|..+.|+++|+||++-+. -+|+|||++.. ..+++++-
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 99998432 12211 1 12246888999999999998654 48999999864 34666532
Q ss_pred -------CCCE---EEEEECCCCCEEEEEECCCeEEEE
Q 010777 470 -------NGGI---FEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 470 -------~~~i---~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
+..| +.+.||.|.+++.+|+.+...-+|
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 1234 468899999999998877665554
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=5.8e-08 Score=95.74 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=120.6
Q ss_pred CeEEEEECCCceeEeecCCCCCEEEEEecCCCCE-EEEEecC---CeEEEEeCCCcceeEeeeeccCCeEEEecCCCceE
Q 010777 234 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 309 (501)
Q Consensus 234 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
..|.+-|.++.....+.... .+....|+|+|+. ++..+.+ ..|.++|+.+++....
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l------------------- 228 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI------------------- 228 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-------------------
Confidence 34555555555444444333 7788999999985 5543333 3566777766542211
Q ss_pred EEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEE-EEeCC--CeEEEEeCCCCceeeecccCCCCEEEEEE
Q 010777 310 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--VTAKIWNMKQDKYVHDLREHSKEIYTIRW 386 (501)
Q Consensus 310 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~s~D--g~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 386 (501)
....+......|+|||+.++ +.+.+ ..|.++++.++... .+..+........|
T Consensus 229 -----------------------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~ 284 (419)
T PRK04043 229 -----------------------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNF 284 (419)
T ss_pred -----------------------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEE
Confidence 11223344577999998665 34334 46777788776533 34333333345679
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCC--eEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC---------CcEEE
Q 010777 387 SPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---------KSMHI 455 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D---------g~i~i 455 (501)
+|+|. .++++....+ .|.+.|+.+++...... ... ....|||||++|+..+.. ..|.+
T Consensus 285 SPDG~--------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 285 VEDDK--------RIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred CCCCC--------EEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 99986 2334433333 57888888776533221 111 224899999998866543 36888
Q ss_pred EeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECC
Q 010777 456 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 491 (501)
Q Consensus 456 w~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d 491 (501)
.++.++... .++..+......|+|||+.|+.....
T Consensus 354 ~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 354 ISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEcc
Confidence 898887653 33333333468999999988876543
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=6.2e-08 Score=90.79 Aligned_cols=214 Identities=14% Similarity=0.204 Sum_probs=152.1
Q ss_pred ecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec--cC-----Ce--E------EEecCCCceEEEecCCCeEEEEEcCC
Q 010777 261 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--SG-----PT--L------DVDWRNNVSFATSSTDNMIYVCKIGE 325 (501)
Q Consensus 261 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--~~-----~~--~------~~~~~~~~~~~~~~~d~~i~~~~~~~ 325 (501)
.+.+|+.++-. .-|.|.+||+.+..+.. +... .. +. . .....+...++..+ .|..++.+...
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence 45678777654 35789999988765432 1111 00 00 0 01112233333333 35566666555
Q ss_pred CcceeeecCCCCceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEE
Q 010777 326 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 404 (501)
Q Consensus 326 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~s 404 (501)
+-.++ .+|.+.|.-..+.-+++-++.|..|| .+-|||..++.. ..+...-+.|.+++.+|+|. .++.
T Consensus 351 ~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK---------~~vv 418 (668)
T COG4946 351 GYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK---------KVVV 418 (668)
T ss_pred CeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc---------EEEE
Confidence 54443 36777788888888888899999999 899999887753 33455667899999999997 6777
Q ss_pred EeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeeEEEEecCCCEEEEEECC
Q 010777 405 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGKIVKTYTGNGGIFEVCWNK 480 (501)
Q Consensus 405 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D----g~i~iw~~~~~~~~~~~~~~~~i~~~~ws~ 480 (501)
+.....|-+.|+.++.....-+...+-|+.++|||++++||-+--+ ..|++||..++++....+..+--++.+|.|
T Consensus 419 aNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 419 ANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred EcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence 8888889999999998766655566779999999999999976555 479999999999887766655568889999
Q ss_pred CCCEEEEEE
Q 010777 481 EGDKIAACF 489 (501)
Q Consensus 481 ~g~~la~~~ 489 (501)
||++|..-+
T Consensus 499 d~ryLYfLs 507 (668)
T COG4946 499 DGRYLYFLS 507 (668)
T ss_pred CCcEEEEEe
Confidence 999776544
No 280
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.4e-09 Score=97.68 Aligned_cols=268 Identities=16% Similarity=0.273 Sum_probs=184.0
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCC----ceeEeecCCCCCEEEEEecCCCCEEEEEec-CCeEEEEeCCCcceeEeeee
Q 010777 219 DWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEF 293 (501)
Q Consensus 219 ~~s~~~~~l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~~~~~ 293 (501)
.+....+++.+++.||.++.|-... .....+..|.+.|.+++.+.++-.+.|.+. |..++++|+.+-..+.-+..
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 3445668999999999999998654 223345678888999999999988899777 99999999876554432221
Q ss_pred ccCCeEEEec--CCC----ceEEEecCCCeEEEEEcCCCc-ceeee-cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010777 294 HSGPTLDVDW--RNN----VSFATSSTDNMIYVCKIGENR-PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 365 (501)
Q Consensus 294 ~~~~~~~~~~--~~~----~~~~~~~~d~~i~~~~~~~~~-~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~ 365 (501)
.--| -.+.| ..+ ...++.-.++.+.++|-.... +...+ .-|..+|.++.++|.+..+++....|.|..|..
T Consensus 95 ~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 95 VDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred ccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecC
Confidence 1111 11222 111 222344567888998865543 33333 348899999999999999999999999999987
Q ss_pred CC------Cce---------eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee----
Q 010777 366 KQ------DKY---------VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---- 426 (501)
Q Consensus 366 ~~------~~~---------~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~---- 426 (501)
.. .+. +..+........++.|+|++. .+++-+.|..|++++.++|+.++.+.
T Consensus 174 e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 174 EGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred CCcccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEeccchhhhhhhccch
Confidence 62 111 111222334567889999986 56777799999999999887654432
Q ss_pred ----------------------------CCC-CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCE----
Q 010777 427 ----------------------------GHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI---- 473 (501)
Q Consensus 427 ----------------------------~h~-~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i---- 473 (501)
.|. ..-+.+.|...|++|+-|+.=| |++.++.++.+++.+-....+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~ 323 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTR 323 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhh
Confidence 111 1235678999999999988766 999999999888776332111
Q ss_pred ----------------------EEEEECCCCCEEEEEECCCeEEEE
Q 010777 474 ----------------------FEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 474 ----------------------~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
..+.+.+|-..++++.....+++|
T Consensus 324 ~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 324 LSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred HHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 123466677777777777666665
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2.1e-06 Score=78.46 Aligned_cols=267 Identities=14% Similarity=0.218 Sum_probs=162.2
Q ss_pred CCccceeEEEECCCCCEEEEEECC---CcEEEEecCC--CCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 151 GHTSEVCACAWSPAGSLLASGSGD---STARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 151 ~H~~~V~~~~~sp~~~~l~sgs~D---~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
.+...++=++|+|+++.|+++-.+ |.|--|.+.. |. +... ++......+-+.++++++|+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~---------Lt~l------n~~~~~g~~p~yvsvd~~g~ 101 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR---------LTFL------NRQTLPGSPPCYVSVDEDGR 101 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe---------EEEe------eccccCCCCCeEEEECCCCC
Confidence 355667889999999999988765 6677776653 21 1111 11111122337789999999
Q ss_pred EEEEEeCC-CeEEEEECCC--ce--eEeecCCCCC----------EEEEEecCCCCEEEEEec-CCeEEEEeCCCcceeE
Q 010777 226 LLATGSYD-GQARIWSTNG--DL--KCTLSKHKGP----------IFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQ 289 (501)
Q Consensus 226 ~l~sg~~d-g~i~iw~~~~--~~--~~~~~~h~~~----------V~~l~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~ 289 (501)
+++++.+. |.|.++-+.. .+ ......|.++ +....|.|++++|+++.- --.|.+|++..+.+..
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 99998775 7888887642 21 1123345555 888999999999998754 2257788877554321
Q ss_pred eeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE-eCCCeEEEEeCCCC
Q 010777 290 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQD 368 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-s~Dg~i~iwd~~~~ 368 (501)
.-.. .+ .-.....-|.|||++++.... =-+++|-+|.....
T Consensus 182 ~~~~-------------------------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 182 ADPA-------------------------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred cccc-------------------------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 1100 00 112234568999999986544 45889999988763
Q ss_pred -ceeeeccc---------CCCCEEEEEEcCCCCCCCCCCCcEEEEEE-eCCCeEEEEeCCC--CeEE--EEeeCCCCCeE
Q 010777 369 -KYVHDLRE---------HSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL--GKLL--YSLNGHREPVY 433 (501)
Q Consensus 369 -~~~~~~~~---------~~~~v~~i~~~p~g~~~~~~~~~~~l~sg-s~dg~i~iwd~~~--~~~~--~~~~~h~~~v~ 433 (501)
..+..++. .......|..+|+|+ +|.++ -....|-+|.+.. +++. .....+...-.
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr---------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR 294 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR---------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR 294 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCC---------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc
Confidence 22222211 123456788888886 33332 2334677776653 3322 12223333457
Q ss_pred EEEECCCCCEEEEEeCC-CcEEEEeCC--CCeeEEEEe--cCCCEEEEEEC
Q 010777 434 SLAFSPTGEYLASGSLD-KSMHIWSLK--EGKIVKTYT--GNGGIFEVCWN 479 (501)
Q Consensus 434 ~l~~spdg~~lasgs~D-g~i~iw~~~--~~~~~~~~~--~~~~i~~~~ws 479 (501)
...|+|+|++|++++.+ ..|.+|.+. +|++..... .-....++.|.
T Consensus 295 ~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 295 DFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 88999999999988865 468888764 566543322 22334565553
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.08 E-value=1.4e-07 Score=92.91 Aligned_cols=259 Identities=10% Similarity=0.058 Sum_probs=156.8
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEe
Q 010777 224 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 302 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 302 (501)
+..++.++.+|.+..+|. .++....+.-......+.. .++..++.++.++.+..+|..+++..-....... +...-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence 567888888999999995 4554443332221111122 2467788899999999999999887655443221 11100
Q ss_pred cCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCce-----eEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccC
Q 010777 303 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 377 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 377 (501)
...+..++.+..++.++.++..+++.+-.+......+ .+.... +..++.+..+|.+..+|..+++.+......
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 0123345566778999999998877665543222111 111111 246778888899999999888765432211
Q ss_pred CC----CE---EEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC
Q 010777 378 SK----EI---YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 450 (501)
Q Consensus 378 ~~----~v---~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D 450 (501)
.. .+ ..+.-+|. . ... .+..++.+|.++.||..+|+.++..... .....+ .++..|+.++.+
T Consensus 220 ~~~g~~~~~~~~~~~~~p~----~--~~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPV----V--DGG-QVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred cCCCCCchhhhhccCCccE----E--ECC-EEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCC
Confidence 00 00 00000010 0 011 4556778999999999999988876521 112222 246678888899
Q ss_pred CcEEEEeCCCCeeEEEEec-CCC-EEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 451 KSMHIWSLKEGKIVKTYTG-NGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 451 g~i~iw~~~~~~~~~~~~~-~~~-i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
|.|..+|..+|+.+..... ... ..+... .|..|+++..+|.|+++|.+
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 9999999999988766532 111 222222 46788899999999998853
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.8e-09 Score=105.96 Aligned_cols=292 Identities=20% Similarity=0.333 Sum_probs=179.1
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC--CEEEEE
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLATG 230 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~--~~l~sg 230 (501)
.+++.++.++|.|+-+|+++.-|.+ +-|+...-. + ...+.+. ..-.|-...|++.. .+-+..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~-------p--pr~l~h~------tpw~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFT-------P--PRWLHHI------TPWQVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCC-------C--ceeeecc------CcchhcceecccCCCCceeEEe
Confidence 3568899999999988888876643 445543210 0 0111111 12235666777643 233333
Q ss_pred eCCCeEEEEECCC----ceeEeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcce-eEeeeeccCCeEEEecC
Q 010777 231 SYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWR 304 (501)
Q Consensus 231 ~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 304 (501)
.......+|++.. .....+.+|+.+|+.+.|+|+. ..+++++.|-.+..||+++... ...+.........+.|.
T Consensus 88 ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 88 TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 4445566887532 3344678999999999999976 4688999999999999987542 22222222223344553
Q ss_pred C-CceEEEecCCCeEEEEEcCCC-cceeeecCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcee-eecccCCCC
Q 010777 305 N-NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV-HDLREHSKE 380 (501)
Q Consensus 305 ~-~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~~~ 380 (501)
. +..+.+++-.+.|++|+.+.+ .|+..+++|...|+.++|..- ...+.+++.||+|++||....... ........+
T Consensus 168 yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p 247 (1081)
T KOG0309|consen 168 YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP 247 (1081)
T ss_pred ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCc
Confidence 2 223334455667999998865 577788899999999998753 346889999999999997643211 111123345
Q ss_pred EEEEEEcCCCCCCCC-CC-CcEEEEEEeCCCeEEEEeCCC-CeEEEEeeCCCCCeEEEEECCCC----------CEEEEE
Q 010777 381 IYTIRWSPTGSGTNN-PN-QQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG----------EYLASG 447 (501)
Q Consensus 381 v~~i~~~p~g~~~~~-~~-~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg----------~~lasg 447 (501)
+..-++-|-|.+... |. +..++.---.++....|+..+ .+.++++.||...|...-|-..+ -.|+|=
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW 327 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence 666666666543110 00 000111111122333444433 36789999999888776664322 258999
Q ss_pred eCCCcEEEEeCCC
Q 010777 448 SLDKSMHIWSLKE 460 (501)
Q Consensus 448 s~Dg~i~iw~~~~ 460 (501)
|.|.++++|-+..
T Consensus 328 SkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDS 340 (1081)
T ss_pred ecCCceEeeeccH
Confidence 9999999998753
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.07 E-value=1.9e-06 Score=79.33 Aligned_cols=221 Identities=15% Similarity=0.173 Sum_probs=143.7
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEec-CCCCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 217 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 217 ~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
+.+|.+ ++.++++--..+.|..|+..+.....+.... ..++++. ++ ..|+.+...+ +.++|+.+++....+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 456777 6777777777899999998877655443333 5677777 55 5566666544 455588877543322110
Q ss_pred cCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecC-CCCceeEEEEcCCCCEEEEEeCC--------CeEEEEeC
Q 010777 295 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNM 365 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~D--------g~i~iwd~ 365 (501)
. .. .....+.+++.|+|++.++.... |.|..++.
T Consensus 80 ~-------------------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 80 D-------------------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp T-------------------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred C-------------------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 0 01 12357788999999988877654 45666666
Q ss_pred CCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC--C-----eEEEEeeCCCCCeEEEEEC
Q 010777 366 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--G-----KLLYSLNGHREPVYSLAFS 438 (501)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--~-----~~~~~~~~h~~~v~~l~~s 438 (501)
. ++ +..+...-.....|+|+|++. .++++-+..+.|..+++.. . +....+....+..-.+++.
T Consensus 123 ~-~~-~~~~~~~~~~pNGi~~s~dg~--------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 123 D-GK-VTVVADGLGFPNGIAFSPDGK--------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp T-SE-EEEEEEEESSEEEEEEETTSS--------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred C-Ce-EEEEecCcccccceEECCcch--------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 5 33 222333345568899999986 3556777888899998852 2 1222333332347789999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCEEEEEE-CCCCCEEEEEE
Q 010777 439 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW-NKEGDKIAACF 489 (501)
Q Consensus 439 pdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~-~~i~~~~w-s~~g~~la~~~ 489 (501)
.+|++.++.-..+.|.+++.. |+++..+... ..+++++| -++.+.|...+
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 999998888889999999987 8888777654 57999999 46777666544
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=3.2e-07 Score=81.29 Aligned_cols=235 Identities=18% Similarity=0.251 Sum_probs=123.6
Q ss_pred EEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 010777 159 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 238 (501)
Q Consensus 159 ~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~i 238 (501)
++.+++|++||.- .|..|-|=...+.- . ..+..+.. .......=.-++||||+.+||.+...|+|++
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf----------~-si~~kcqV-pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDF----------S-SIIGKCQV-PKDPNPQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCc----------h-heeEEEec-CCCCCchheEEEECCCCcEEEEEcCCCeEEE
Confidence 4667888888865 56666554332210 0 00111111 1112234567999999999999999999999
Q ss_pred EECCCceeEeecCC-------CCCEEEEEecCCC------CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCC
Q 010777 239 WSTNGDLKCTLSKH-------KGPIFSLKWNKKG------DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 305 (501)
Q Consensus 239 w~~~~~~~~~~~~h-------~~~V~~l~~~~~~------~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 305 (501)
+|..+.....+..- ..+|.++.|.+-. ..|+.-..+|.++-|-+
T Consensus 70 fdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v----------------------- 126 (282)
T PF15492_consen 70 FDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV----------------------- 126 (282)
T ss_pred EecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE-----------------------
Confidence 99887655444331 1234444443211 01222222222222211
Q ss_pred CceEEEec-CCCeEEEEEcCCCcceeeecC-CCCceeEEEEcCCCCEEEEEeCCCe-----------EEEEeCCCCceee
Q 010777 306 NVSFATSS-TDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVT-----------AKIWNMKQDKYVH 372 (501)
Q Consensus 306 ~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~s~Dg~-----------i~iwd~~~~~~~~ 372 (501)
+.+ ..+.... ....|.. +...|+++.++|..++|+.||.... +.-|.+-.+.
T Consensus 127 -----s~gt~q~y~e~-------hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~--- 191 (282)
T PF15492_consen 127 -----SVGTNQGYQEN-------HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS--- 191 (282)
T ss_pred -----EcccCCcceee-------EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC---
Confidence 111 1111000 0112222 3567999999999988877664321 1222221111
Q ss_pred ecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe------EEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEE
Q 010777 373 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 446 (501)
Q Consensus 373 ~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~------i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~las 446 (501)
|. +..++.+.|+. -.+|.+-+.+...........|..|..||||++||+
T Consensus 192 ---------------Py----------yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ 246 (282)
T PF15492_consen 192 ---------------PY----------YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLAC 246 (282)
T ss_pred ---------------Cc----------EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEE
Confidence 10 11122221211 123333222222122224567999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeEEEEec
Q 010777 447 GSLDKSMHIWSLKEGKIVKTYTG 469 (501)
Q Consensus 447 gs~Dg~i~iw~~~~~~~~~~~~~ 469 (501)
...+|.|.+|++..-++.+.+..
T Consensus 247 ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 247 IHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEcCCeEEEEecCcchhhcccch
Confidence 99999999999998777666643
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=3.1e-07 Score=90.61 Aligned_cols=193 Identities=13% Similarity=0.053 Sum_probs=114.7
Q ss_pred CeEEEEECCCCCE-EEEEeCC---CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEE-EecC--CeEEEEeCCCcc
Q 010777 214 DVTTLDWNGEGTL-LATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCD--KTAIVWDVKTEE 286 (501)
Q Consensus 214 ~V~~~~~s~~~~~-l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D--~~i~iwd~~~~~ 286 (501)
.+....|+|||+. ++..+.+ ..|.+++..+.....+....+.+....|+|+|+.|+. .+.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5678899999984 6544443 4688888876655555555666777889999987654 3333 334444544432
Q ss_pred eeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC-CC--eEEEE
Q 010777 287 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 363 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg--~i~iw 363 (501)
.. .+..+.+......|+|||+.|+-.+. .+ .|.++
T Consensus 269 ~~------------------------------------------~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 269 LT------------------------------------------QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EE------------------------------------------EcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 11 11112222234579999987765553 33 57777
Q ss_pred eCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC--------CeEEEEeCCCCeEEEEeeCCCCCeEEE
Q 010777 364 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSL 435 (501)
Q Consensus 364 d~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~l 435 (501)
|+.++...+... ... ....|+|+|. .++++.... ..|.+.|+.++.. ..+... ......
T Consensus 307 dl~~g~~~rlt~-~g~--~~~~~SPDG~--------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p 373 (419)
T PRK04043 307 KLNSGSVEQVVF-HGK--NNSSVSTYKN--------YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFP 373 (419)
T ss_pred ECCCCCeEeCcc-CCC--cCceECCCCC--------EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCe
Confidence 887766533221 111 1248999986 233343332 3688888887754 334332 233458
Q ss_pred EECCCCCEEEEEeCC---CcEEEEeCCCC
Q 010777 436 AFSPTGEYLASGSLD---KSMHIWSLKEG 461 (501)
Q Consensus 436 ~~spdg~~lasgs~D---g~i~iw~~~~~ 461 (501)
.|+|||++|+-.+.+ ..|.+.++...
T Consensus 374 ~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 374 RFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 999999988765543 24666676543
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.3e-07 Score=92.04 Aligned_cols=329 Identities=20% Similarity=0.257 Sum_probs=200.9
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC---------
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--------- 223 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~--------- 223 (501)
...-.++.|+|.|- +|-|+. ..|.+-|..+-+.+ .....|...|+.+.|.|-
T Consensus 15 ~sN~~A~Dw~~~GL-iAygsh-slV~VVDs~s~q~i-----------------qsie~h~s~V~~VrWap~~~p~~llS~ 75 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGL-IAYGSH-SLVSVVDSRSLQLI-----------------QSIELHQSAVTSVRWAPAPSPRDLLSP 75 (1062)
T ss_pred cccccccccCccce-EEEecC-ceEEEEehhhhhhh-----------------hccccCccceeEEEeccCCCchhccCc
Confidence 33467889998874 444443 45666664332211 111224567888888652
Q ss_pred ---CCEEEEEeCCCeEEEEECC-CceeEeecCCCCCEEEEEecC---CC-CEEEEEecCCeEEEEeCCCcceeEeeeecc
Q 010777 224 ---GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK---KG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 295 (501)
Q Consensus 224 ---~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 295 (501)
..+|+++...|.|.+||.. +.....+..|..+|..++|-+ +. ..|++-....++.+|+..+|+..-.+....
T Consensus 76 ~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~ 155 (1062)
T KOG1912|consen 76 SSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH 155 (1062)
T ss_pred cccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC
Confidence 2467888888999999965 345567788899999999865 33 456676777899999999998665555444
Q ss_pred CCeEEEec--CCCceEEEecCCCeEEEEEcCC------------------------------------------------
Q 010777 296 GPTLDVDW--RNNVSFATSSTDNMIYVCKIGE------------------------------------------------ 325 (501)
Q Consensus 296 ~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~------------------------------------------------ 325 (501)
....++.+ -+...|...+..|.+.+++.-.
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 44443433 2344555555555555554321
Q ss_pred --------------------------CcceeeecCCCCceeEEEEcCCC--CEEEEEeCCCeEEEEeCCC----------
Q 010777 326 --------------------------NRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQ---------- 367 (501)
Q Consensus 326 --------------------------~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~s~Dg~i~iwd~~~---------- 367 (501)
..++....--.+.+.-+.|-|++ ..|.+...||.+.||-.+.
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence 00000000011222235555665 4688999999999996433
Q ss_pred ------CceeeecccCC---------------------------------CCE---EE----------------------
Q 010777 368 ------DKYVHDLREHS---------------------------------KEI---YT---------------------- 383 (501)
Q Consensus 368 ------~~~~~~~~~~~---------------------------------~~v---~~---------------------- 383 (501)
+.+++.++... +.+ +.
T Consensus 316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~ 395 (1062)
T KOG1912|consen 316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT 395 (1062)
T ss_pred hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc
Confidence 11111110000 000 00
Q ss_pred --EEEcCCCC-----------------------CCCCCC-CcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEE
Q 010777 384 --IRWSPTGS-----------------------GTNNPN-QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 437 (501)
Q Consensus 384 --i~~~p~g~-----------------------~~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 437 (501)
+..+.+|. +...|. -..++|.|...|+|.++|+.++.....+..|...|.++.|
T Consensus 396 ~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW 475 (1062)
T KOG1912|consen 396 SLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEW 475 (1062)
T ss_pred cccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeee
Confidence 00011110 000000 1236899999999999999999888888899999999999
Q ss_pred CCCCCEEE---------EEeCCCcEEEEeCCCCeeE--EEEec--CCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 438 SPTGEYLA---------SGSLDKSMHIWSLKEGKIV--KTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 438 spdg~~la---------sgs~Dg~i~iw~~~~~~~~--~~~~~--~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
-....++- +|+.-+.+.+-++++|... +..++ ...|..+.-|..|.+||..+.+.-+.+||+|
T Consensus 476 ~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 476 LGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred ccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 76554432 2223346788899988532 22222 4568899999999999999999999999985
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=7.3e-10 Score=110.63 Aligned_cols=263 Identities=17% Similarity=0.287 Sum_probs=174.4
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
+.+++.|+...+|++|+-+.++|+.|+-.|.|+++++.+|.. .++++.|..+|+.+.=+-+|.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------e~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------EESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------cccccccccccccccccCCcc
Confidence 456788999999999999999999999999999999987742 345667888999998888998
Q ss_pred EEEEEeCC-C-eEEEEECCC--ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 226 LLATGSYD-G-QARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 226 ~l~sg~~d-g-~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
.+++.+.- . ...+|+... +..+++. .-.++.|+.....-+.|..-....+||++|+....++....
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~------ 1226 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT------ 1226 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc------
Confidence 77665443 2 567898653 2333332 23567887664443444444567889988876444321100
Q ss_pred ecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCE
Q 010777 302 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 381 (501)
Q Consensus 302 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v 381 (501)
.+.+..-+++.|+|+..+++ +|| .+||.+...-++.|......
T Consensus 1227 -------------------------------~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~- 1269 (1516)
T KOG1832|consen 1227 -------------------------------VTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY- 1269 (1516)
T ss_pred -------------------------------hhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheec-
Confidence 01112236788999988876 455 37998877666665433211
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEe-----C-C-----
Q 010777 382 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS-----L-D----- 450 (501)
Q Consensus 382 ~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs-----~-D----- 450 (501)
..-.|+|.|. -+++ - --|||+++.+.++.+.... -..|.|+..|..+...- . |
T Consensus 1270 ~~G~FHP~g~--------eVII-N-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~~~~d~~sdvh~~r 1333 (1516)
T KOG1832|consen 1270 GGGGFHPSGN--------EVII-N-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAMLNIEDVMSDVHTRR 1333 (1516)
T ss_pred ccccccCCCc--------eEEe-e-----chhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhhhhhhhhhhhcccc
Confidence 1123455543 3333 2 2589999888876655432 25678888887654322 0 0
Q ss_pred ------CcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEE
Q 010777 451 ------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC 488 (501)
Q Consensus 451 ------g~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~ 488 (501)
...+-|+..+.+-+.+++....+.++|=+|...+|+.-
T Consensus 1334 ~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1334 VKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 23566677777788888888889999999988877654
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.97 E-value=9e-07 Score=92.36 Aligned_cols=272 Identities=12% Similarity=0.220 Sum_probs=154.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeee
Q 010777 213 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 292 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 292 (501)
..|.++.|..+..-++.+...|.|.+-|...........-.+.|.+++|+|++..++..+.++++.+-+- +-..+....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccc
Confidence 5799999999999999999999999998776555445455678999999999999998888888766431 111111110
Q ss_pred ec-----cCCeEEEecCCC-ceEEEecCCCeEEEEE-cCCCcceeeecCCCCceeEEEEcCCCCEEEEE-----eCCCeE
Q 010777 293 FH-----SGPTLDVDWRNN-VSFATSSTDNMIYVCK-IGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-----SDDVTA 360 (501)
Q Consensus 293 ~~-----~~~~~~~~~~~~-~~~~~~~~d~~i~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-----s~Dg~i 360 (501)
.+ .+....+.|... ..|- ++. |....-. +...+.+....-| ..-++|.|--||.+||+. ..-..|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfr-gs~-gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFR-GSE-GRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccceecccccceeee-cch-hhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 00 111222333211 1110 000 0000000 0000000000011 123469999999999883 333799
Q ss_pred EEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEE---eCCCeEEEEeCC---CCeEEEEeeCCCCCeEE
Q 010777 361 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVE---LGKLLYSLNGHREPVYS 434 (501)
Q Consensus 361 ~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sg---s~dg~i~iwd~~---~~~~~~~~~~h~~~v~~ 434 (501)
+|||-. +..-..-....+.-.+++|-|.|. ++++- ..|+.|.+|.-. -|.....+......|..
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs---------~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGS---------LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCC---------eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 999966 332222122233446789999886 44443 346678888632 22222223333345899
Q ss_pred EEECCCCCEEEE---EeCCCcEEEEeCCCCee--EEEEecCCCEEEEEECCCC-CEEEEEECCCeEEEEEe
Q 010777 435 LAFSPTGEYLAS---GSLDKSMHIWSLKEGKI--VKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDF 499 (501)
Q Consensus 435 l~~spdg~~las---gs~Dg~i~iw~~~~~~~--~~~~~~~~~i~~~~ws~~g-~~la~~~~d~~v~v~~~ 499 (501)
++|+.++..||+ ......|++|-+.+..- -+.+.-..... +-|+|-- ..|..-..+|.+.|+++
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEE
Confidence 999999999987 44455699999887542 22222222222 6788743 23333335666666655
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.1e-08 Score=94.02 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=106.0
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeE
Q 010777 157 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 236 (501)
Q Consensus 157 ~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i 236 (501)
..+..+|.+++||.+..+....++++...... . ......+.. .....+..+..+........++....+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~--~--kl~~~~~v~-------~~~~ai~~~~~~~sv~v~dkagD~~~~ 134 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG--A--KLLDVSCVP-------KRPTAISFIREDTSVLVADKAGDVYSF 134 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc--c--eeeeEeecc-------cCcceeeeeeccceEEEEeecCCceee
Confidence 34455666777776666666556555432210 0 000111110 012234444444444444455556677
Q ss_pred EEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCC
Q 010777 237 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 316 (501)
Q Consensus 237 ~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 316 (501)
.+|.........+-||-+-++.|+|+||+++++++..|..|++-....--.
T Consensus 135 di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~----------------------------- 185 (390)
T KOG3914|consen 135 DILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV----------------------------- 185 (390)
T ss_pred eeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-----------------------------
Confidence 777765433345668999999999999999999999999998865432110
Q ss_pred eEEEEEcCCCccee-eecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecc
Q 010777 317 MIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 375 (501)
Q Consensus 317 ~i~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 375 (501)
+. -+-||...|..++.-++ ..|+++|.|+++++||+.+++.++++.
T Consensus 186 ------------IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 186 ------------IESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ------------hhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 11 13479999999988754 558999999999999999999886653
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.95 E-value=2.8e-07 Score=80.35 Aligned_cols=214 Identities=14% Similarity=0.065 Sum_probs=137.8
Q ss_pred CCEEEEEecCCeEEEEeCCCcceeEee-eeccCCeEEEe--cCCCceEEEecCCCeEEEEEcCCCcceeeecCCC--Cce
Q 010777 265 GDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVD--WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--GEV 339 (501)
Q Consensus 265 ~~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~--~~v 339 (501)
..+|+.|++-|...+|.+.+.+..... ..+...+.-+. ......+..++.|.++.+.++..+..-.. -|. -.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ 161 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQ 161 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eeccccce
Confidence 458999999999999999876543322 22221111110 11223455667777777766654332211 132 237
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eee--cccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 010777 340 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 416 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~-~~~--~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~ 416 (501)
+++++++|++++++.++...|..|.+..... +.. .......-.+..|+.... .+|+++.||++.|||+
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~---------~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL---------QFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc---------eEEEEecCCcEEEEEe
Confidence 8999999999999999999999998765432 211 122233345566666543 7899999999999999
Q ss_pred CCCeEEE-----EeeCCCCCeEEEEECCCCC--EEEEEeCCCcEEEEeCCCCeeEEEE---ec-----C-CCEEEEEECC
Q 010777 417 ELGKLLY-----SLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTY---TG-----N-GGIFEVCWNK 480 (501)
Q Consensus 417 ~~~~~~~-----~~~~h~~~v~~l~~spdg~--~lasgs~Dg~i~iw~~~~~~~~~~~---~~-----~-~~i~~~~ws~ 480 (501)
+...... +-..|.++|..+.|+|-|. +|.-.-.-+.+++-|+++++-.+.+ +. . ..|+..+|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 8654322 2245889999999998763 5555566789999999998654433 11 1 2377888888
Q ss_pred CCCEEEEEE
Q 010777 481 EGDKIAACF 489 (501)
Q Consensus 481 ~g~~la~~~ 489 (501)
++..+-+..
T Consensus 313 ~n~s~~v~~ 321 (344)
T KOG4532|consen 313 ENESNDVKN 321 (344)
T ss_pred CCccccccc
Confidence 876554443
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=6.3e-06 Score=81.54 Aligned_cols=305 Identities=12% Similarity=0.076 Sum_probs=170.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE-EEEECCCCCEEEEEeCCCeEEEEECC-
Q 010777 165 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN- 242 (501)
Q Consensus 165 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~~~~~l~sg~~dg~i~iw~~~- 242 (501)
+..|+.++.++.+.-+|..+|+........... ..... .....+. .+.. ++..++.++.+|.+..+|..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~~~--~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t 139 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-----GWFSK--NKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED 139 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-----ccccc--ccccccccccEE--ECCEEEEEcCCCEEEEEECCC
Confidence 567777777888888888777643321111000 00000 0000000 0111 34567778889999999974
Q ss_pred CceeEeecCCCCCEEE-EEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe-----EEEecCCCceEEEecCCC
Q 010777 243 GDLKCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDWRNNVSFATSSTDN 316 (501)
Q Consensus 243 ~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~ 316 (501)
++........ +.+.+ ... .+..++.++.++.+..+|+.+++..-.+....... ...... ...++.+..++
T Consensus 140 G~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g 215 (394)
T PRK11138 140 GEVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNG 215 (394)
T ss_pred CCCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCC
Confidence 4444433322 22221 111 24567778889999999999998765554321100 000001 22345566778
Q ss_pred eEEEEEcCCCcceeeecCCC----C---ceeEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEc
Q 010777 317 MIYVCKIGENRPIKTFAGHQ----G---EVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 317 ~i~~~~~~~~~~~~~~~~h~----~---~v~~v~~~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 387 (501)
.++.++..+++.+-.+.... . ....+..+| .+..++.++.+|.+..+|..+++.+-.... .....+...
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~ 293 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVD 293 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEE
Confidence 88888877766543322100 0 011111122 245666777899999999998876543221 111111110
Q ss_pred CCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCC-CeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEE
Q 010777 388 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 466 (501)
Q Consensus 388 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~ 466 (501)
.+ .|..++.+|.|..+|..+|+.++....... ...+... .+.+|+.++.+|.|.+.|..+|+++..
T Consensus 294 -~~----------~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 294 -GG----------RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred -CC----------EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 11 355577899999999999988876432111 1122222 255788889999999999999998877
Q ss_pred EecC-CCEEE-EEECCCCCEEEEEECCCeEEEEEe
Q 010777 467 YTGN-GGIFE-VCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 467 ~~~~-~~i~~-~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
+... ..+.+ ... .+..|..++.+|.|+.+.+
T Consensus 361 ~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 361 QKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 6543 22322 222 3568888999999887753
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=5.2e-08 Score=86.52 Aligned_cols=278 Identities=17% Similarity=0.278 Sum_probs=162.3
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCC-----CCCCCCceEEEEEeeccccccCCCCeEEEEECCCC--C
Q 010777 153 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-----GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--T 225 (501)
Q Consensus 153 ~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~--~ 225 (501)
..-|+++-|...|.+|+||...|.|.+|.-.....-. ..|........++.+ .....|..+.|..++ .
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl-----eieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL-----EIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc-----cHHHHhhheeeecCCCcc
Confidence 3458999999999999999999999999754432100 011111000000000 112347778787654 3
Q ss_pred EEEEEeCCCeEEEEECCCceeEe---------e-cCCCCCEEEEEe--cC--CCCEEEEEecCCeEEEEeCCCcceeEee
Q 010777 226 LLATGSYDGQARIWSTNGDLKCT---------L-SKHKGPIFSLKW--NK--KGDYLLTGSCDKTAIVWDVKTEEWKQQF 291 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~~~~~~~---------~-~~h~~~V~~l~~--~~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 291 (501)
.++..+.|.+|++|.+....... + ....+++++..- -| ..+.-+.+..- .|+|.
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p--~rvya---------- 168 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP--CRVYA---------- 168 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc--ceecc----------
Confidence 56777899999999864321110 0 011233332210 00 01111111111 22220
Q ss_pred eeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCc---ceeeecCCC-----CceeEEEEcCCC-CEEEEEeCCCeEEE
Q 010777 292 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQ-----GEVNCVKWDPTG-SLLASCSDDVTAKI 362 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~-----~~v~~v~~~~~~-~~l~s~s~Dg~i~i 362 (501)
..|...+.++.+..+..+..+.+|-.|.+|.+...- .+..+..|. ..|++..|+|.. ..+.-.+..|.|++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 124444566777777777777788888888765432 233334443 347889999964 56777888899999
Q ss_pred EeCCCCcee----------------eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEe
Q 010777 363 WNMKQDKYV----------------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSL 425 (501)
Q Consensus 363 wd~~~~~~~----------------~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~ 425 (501)
-|++..... .-+......|..+.|+|+|+ ++++-+. -+|+|||++.. .++.++
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---------yIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---------YILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---------EEEEecc-ceEEEEecccccCCceee
Confidence 999843211 01122335678889999986 6666553 58999998754 456666
Q ss_pred eCCC------------CCeE---EEEECCCCCEEEEEeCCCcEEEEe
Q 010777 426 NGHR------------EPVY---SLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 426 ~~h~------------~~v~---~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
.-|. ..|. .+.||-|.+.+.+||.....-||-
T Consensus 319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 5442 2343 478888888888888776666654
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=5.1e-08 Score=89.71 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=70.6
Q ss_pred eeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec-ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC
Q 010777 330 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 408 (501)
Q Consensus 330 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d 408 (501)
....||-..++.|+|+||+++|+++..|..|||-.+..--.+..+ -+|..-|..++..++- .|++||.|
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~----------~LlS~sGD 214 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY----------LLLSGSGD 214 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc----------eeeecCCC
Confidence 345689999999999999999999999999999766544444444 3588888888876653 58999999
Q ss_pred CeEEEEeCCCCeEEEEee
Q 010777 409 STVKLWDVELGKLLYSLN 426 (501)
Q Consensus 409 g~i~iwd~~~~~~~~~~~ 426 (501)
++|++||+.+|+.+.++.
T Consensus 215 ~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CcEEEEecccCCcccccc
Confidence 999999999999886543
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.89 E-value=2.2e-06 Score=78.44 Aligned_cols=216 Identities=19% Similarity=0.158 Sum_probs=133.1
Q ss_pred CCeEEEEEC-CCceeEeecC---CCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCce
Q 010777 233 DGQARIWST-NGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 308 (501)
Q Consensus 233 dg~i~iw~~-~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (501)
+|.|..||. .+.......- ....+ .. ..+.+.++++++.++.+..||..+++..-.+.......... ......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 577888887 4554444322 22222 11 22356778888999999999999998777666522211111 222333
Q ss_pred EEEecCCCeEEEEEcCCCcceeee-cCCC---CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCC----
Q 010777 309 FATSSTDNMIYVCKIGENRPIKTF-AGHQ---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE---- 380 (501)
Q Consensus 309 ~~~~~~d~~i~~~~~~~~~~~~~~-~~h~---~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~---- 380 (501)
++....++.++.++..+++.+-.. .... ..........++..++.+..++.|..+|.++++.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 444446779999998888877663 3221 11122223334788888888999999999999887665443211
Q ss_pred E-------EEEEEcCCCCCCCCCCCcEEEEEEeCCCe-EEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCc
Q 010777 381 I-------YTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 452 (501)
Q Consensus 381 v-------~~i~~~p~g~~~~~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~ 452 (501)
+ ..+.+ .++ .+..++.++. +.+ |+.+++.++... . ..+..+ ..+++..|+.++.++.
T Consensus 159 ~~~~~~~~~~~~~-~~~----------~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~~-~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 159 ISSFSDINGSPVI-SDG----------RVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYSL-PSVDGGTLYVTSSDGR 223 (238)
T ss_dssp EEEETTEEEEEEC-CTT----------EEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECEC-EECCCTEEEEEETTTE
T ss_pred eeeecccccceEE-ECC----------EEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccCC-ceeeCCEEEEEeCCCE
Confidence 1 11111 111 3445556664 555 999999877544 2 223221 4567788888889999
Q ss_pred EEEEeCCCCeeEEE
Q 010777 453 MHIWSLKEGKIVKT 466 (501)
Q Consensus 453 i~iw~~~~~~~~~~ 466 (501)
|.+||+++|+.+..
T Consensus 224 l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 224 LYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEeE
Confidence 99999999998764
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=6e-09 Score=65.29 Aligned_cols=37 Identities=49% Similarity=0.917 Sum_probs=35.1
Q ss_pred ceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEe
Q 010777 145 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 181 (501)
Q Consensus 145 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd 181 (501)
.+.++.+|...|++|+|+|++.+|+||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678999999999999999999999999999999997
No 297
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.1e-08 Score=64.03 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=36.9
Q ss_pred CeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 419 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 419 ~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
++++.++.+|..+|++|+|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 298
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.80 E-value=1.2e-05 Score=75.86 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=109.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCC-eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEe
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDG-QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 290 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg-~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 290 (501)
...|.-..+..+++-++.|..|| .+-|++..+.....+...-+.|.+++.+|+|++++.+.....+.+.|+.++.....
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 44577778888888999999999 89999999888778888889999999999999999998888899999999886655
Q ss_pred eeeccCCeEEEecCCCceEEEe-cCC----CeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe
Q 010777 291 FEFHSGPTLDVDWRNNVSFATS-STD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 355 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~-~~d----~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s 355 (501)
-...-+-+..++|+++.++++- --+ ..|+++++..++....-. ..+.=.+-+|.|++++|.--+
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 5555667889999888776543 233 367888887766543322 222334578899999875443
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=6.7e-08 Score=95.16 Aligned_cols=277 Identities=18% Similarity=0.340 Sum_probs=179.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCc-eeEeecCCCC--CEEEEEecCCC--CE-EEEEecCCeEEEEeCCC-
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKG--PIFSLKWNKKG--DY-LLTGSCDKTAIVWDVKT- 284 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~--~V~~l~~~~~~--~~-l~s~s~D~~i~iwd~~~- 284 (501)
.+++..+..+|.|+-++.++.-|.. +-|+... .....-.|-. .|-.+.|+|.. .+ +++.+ .....+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcC
Confidence 3557778889999988888876643 4444321 1111222333 35566777654 33 44444 45567888743
Q ss_pred --cceeEeeeeccCCeEEEecCC--CceEEEecCCCeEEEEEcCCC-cceeeecCCCCceeEEEEcCCCCEEEEEeCCCe
Q 010777 285 --EEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 359 (501)
Q Consensus 285 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~ 359 (501)
....-.+..|...+.++.|.. ...+++++.|..+..|+++.. .|+..+..-......|+|+.....+...+..+-
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 222233456778899999864 456789999999999999864 456555544556778999987766666777778
Q ss_pred EEEEeCCCC-ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEE--EEeeCCCCCeEEEE
Q 010777 360 AKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNGHREPVYSLA 436 (501)
Q Consensus 360 i~iwd~~~~-~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~ 436 (501)
|++||++.+ .++..+++|...++.+.|..-.. ..+.+++.||+|++||..+...- +.+. -..+|+.-.
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r 252 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGR 252 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccccccceecc-ccCcceecc
Confidence 999999866 46778888888888887754321 14778999999999998754322 2222 335666667
Q ss_pred ECCCCCEEEE----Ee-------CCCcEEEEeCCCC-eeEEEEecCCC-EEEEEECCCCC----------EEEEEECCCe
Q 010777 437 FSPTGEYLAS----GS-------LDKSMHIWSLKEG-KIVKTYTGNGG-IFEVCWNKEGD----------KIAACFANHT 493 (501)
Q Consensus 437 ~spdg~~las----gs-------~Dg~i~iw~~~~~-~~~~~~~~~~~-i~~~~ws~~g~----------~la~~~~d~~ 493 (501)
|-|-|.-..+ |+ -+.....|+..++ +.+.+|.++.. |..+.|...+. .|++=+.|-.
T Consensus 253 ~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~ 332 (1081)
T KOG0309|consen 253 YLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT 332 (1081)
T ss_pred ccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence 7775532211 11 1223334444443 45777877654 66677765432 7888899999
Q ss_pred EEEEEe
Q 010777 494 VCVLDF 499 (501)
Q Consensus 494 v~v~~~ 499 (501)
|++|-+
T Consensus 333 lrlWpI 338 (1081)
T KOG0309|consen 333 LRLWPI 338 (1081)
T ss_pred eEeeec
Confidence 999965
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=4e-06 Score=74.42 Aligned_cols=189 Identities=22% Similarity=0.330 Sum_probs=108.2
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCC------CCEEEE
Q 010777 156 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLAT 229 (501)
Q Consensus 156 V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~------~~~l~s 229 (501)
=+-++||||+.+||.+...|+|+++|+..... ..+.........-..+|..|.|-.- ...|+.
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-----------f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-----------FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccccee-----------EEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 36789999999999999999999999864321 1111100011112345666666432 123555
Q ss_pred EeCCCeEEEEECC-----C-ceeEe--ec-CCCCCEEEEEecCCCCEEEEEecCCe-----------EEEEeCCCcceeE
Q 010777 230 GSYDGQARIWSTN-----G-DLKCT--LS-KHKGPIFSLKWNKKGDYLLTGSCDKT-----------AIVWDVKTEEWKQ 289 (501)
Q Consensus 230 g~~dg~i~iw~~~-----~-~~~~~--~~-~h~~~V~~l~~~~~~~~l~s~s~D~~-----------i~iwd~~~~~~~~ 289 (501)
-.+.|.++=|-+. + ..... +. .+...|.++.|+|..+.|+.|+.... +..|-+-.+.
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~--- 191 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS--- 191 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC---
Confidence 5677777766431 1 12223 22 24778999999999888887765322 1222211111
Q ss_pred eeeeccCCeEEEecCCCceEEEecCCCeE------EEEEcCCCcceeee---cCCCCceeEEEEcCCCCEEEEEeCCCeE
Q 010777 290 QFEFHSGPTLDVDWRNNVSFATSSTDNMI------YVCKIGENRPIKTF---AGHQGEVNCVKWDPTGSLLASCSDDVTA 360 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i------~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~s~Dg~i 360 (501)
+....++...+... .++.+-. .+.| ......|..+..||||++||+.+.+|.|
T Consensus 192 ---------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 192 ---------------PYYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSL 253 (282)
T ss_pred ---------------CcEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeE
Confidence 11111222222111 1222111 1111 1234578899999999999999999999
Q ss_pred EEEeCCCCceeeeccc
Q 010777 361 KIWNMKQDKYVHDLRE 376 (501)
Q Consensus 361 ~iwd~~~~~~~~~~~~ 376 (501)
.+|++-+-++......
T Consensus 254 sLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 254 SLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEecCcchhhcccch
Confidence 9999877665554443
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=3.4e-08 Score=88.93 Aligned_cols=158 Identities=15% Similarity=0.222 Sum_probs=107.2
Q ss_pred cCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeeecccCCCCEEEEEEcC
Q 010777 313 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHSKEIYTIRWSP 388 (501)
Q Consensus 313 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~p 388 (501)
+.+-.+-+.++.++.. +.|. ..+.|.++.|...++++..|...|.|..+|++.+. .....-.|...|+++..-.
T Consensus 231 G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq 308 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQ 308 (425)
T ss_pred cccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhc
Confidence 3344444555544321 2222 45678899999999999999999999999998652 1111223666666654322
Q ss_pred CCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE---EEEeeCCCCCeEE--EEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 389 TGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 389 ~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~~v~~--l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
. .++ +|.+.+.+|.|++||++.-++ +.+..||...-.- +-..+....++++|.|...+||.++.|.+
T Consensus 309 ~-------s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 309 F-------SQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred c-------ccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 1 112 566778899999999987666 8888888543222 23356677899999999999999999999
Q ss_pred EEEEecCC-----CEEEEEECC
Q 010777 464 VKTYTGNG-----GIFEVCWNK 480 (501)
Q Consensus 464 ~~~~~~~~-----~i~~~~ws~ 480 (501)
+.+++... .+.+++|..
T Consensus 381 l~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 381 LCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeccCCCCccccccccceehhc
Confidence 98876532 345566543
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=5.1e-08 Score=87.85 Aligned_cols=157 Identities=13% Similarity=0.252 Sum_probs=122.2
Q ss_pred EECC--CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCc----ceeEeee
Q 010777 219 DWNG--EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFE 292 (501)
Q Consensus 219 ~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~----~~~~~~~ 292 (501)
+|+- .|-. ++.|.+-.|-+-++.+.....|. .++.|.++.|+..++.++.|...|.|..+|++.+ .+..+..
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 5653 2333 55666778888888877666666 6788999999999999999999999999999876 4555566
Q ss_pred eccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcc---eeeecCCCCce--eEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010777 293 FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEV--NCVKWDPTGSLLASCSDDVTAKIWNM 365 (501)
Q Consensus 293 ~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~v--~~v~~~~~~~~l~s~s~Dg~i~iwd~ 365 (501)
.|...+.++... ....+++++.+|.|.+||.+..+. ++.+.||...- .-+-.++....+++++.|-..|||.+
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 777777776543 456788899999999999987766 88999996533 23445667788999999999999999
Q ss_pred CCCceeeecccC
Q 010777 366 KQDKYVHDLREH 377 (501)
Q Consensus 366 ~~~~~~~~~~~~ 377 (501)
+.+..+.++...
T Consensus 376 ~~ghLl~tipf~ 387 (425)
T KOG2695|consen 376 DSGHLLCTIPFP 387 (425)
T ss_pred ccCceeeccCCC
Confidence 999887776543
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.73 E-value=1.1e-05 Score=73.83 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=132.3
Q ss_pred CCeEEEEeCCCcceeEeeeecc--CCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEE
Q 010777 274 DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 351 (501)
Q Consensus 274 D~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 351 (501)
+++|..||+++++.+-...... ..........+..+++++.++.++.++..+++.+-.+.. .+.+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 6889999999988776665421 122211232444555567899999999988887665553 22211111 2235556
Q ss_pred EEEeCCCeEEEEeCCCCceeeec-ccCC---CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC
Q 010777 352 ASCSDDVTAKIWNMKQDKYVHDL-REHS---KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 427 (501)
Q Consensus 352 ~s~s~Dg~i~iwd~~~~~~~~~~-~~~~---~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 427 (501)
+.++.++.++.+|..+++.+..+ .... ...........+. .++.+..++.|..+|+++|+.+.....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD---------RLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT---------EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecC---------EEEEEeccCcEEEEecCCCcEEEEeec
Confidence 66778889999999999887663 2211 0011111111121 456677799999999999999988876
Q ss_pred CCCC----------e-EEEEECCCCCEEEEEeCCCc-EEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEE
Q 010777 428 HREP----------V-YSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 495 (501)
Q Consensus 428 h~~~----------v-~~l~~spdg~~lasgs~Dg~-i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~ 495 (501)
.... + ..+.+. ++ .+..++.++. +.+ |+.+|+.+.... ...+..+ ..+++..|+.+..++.|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEE
T ss_pred CCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEE
Confidence 4422 1 223333 44 6777777775 555 999999765433 3333332 457778888888999999
Q ss_pred EEEee
Q 010777 496 VLDFR 500 (501)
Q Consensus 496 v~~~~ 500 (501)
.||++
T Consensus 226 ~~d~~ 230 (238)
T PF13360_consen 226 ALDLK 230 (238)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99975
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.73 E-value=3.6e-07 Score=92.30 Aligned_cols=183 Identities=17% Similarity=0.268 Sum_probs=136.6
Q ss_pred CCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEE
Q 010777 264 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK 343 (501)
Q Consensus 264 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~ 343 (501)
++..++-|+....+..+|+++....+......+.+.-+. .++..+..+...|+|.+-|....+++.++..|++.|..++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 445678888888889999999887777666554444333 3456677888999999999999999999999999997765
Q ss_pred EcCCCCEEEEEeCCC---------eEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 010777 344 WDPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 414 (501)
Q Consensus 344 ~~~~~~~l~s~s~Dg---------~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 414 (501)
. .|++|+|||..+ -|+|||++..+.+.-+..+.++ .-++|.|.-. ..++.+|..|...+-
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------TRLAVTSQSGQFQFV 293 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--------ceEEEEecccceeec
Confidence 5 589999998644 5789999887766555544443 3455666543 257778888999998
Q ss_pred e---CCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 415 D---VELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 415 d---~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
| +.+. ..++.+......|..+.+|++|+.||.|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 8 3332 122333334455999999999999999999999999973
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.73 E-value=4.1e-06 Score=73.28 Aligned_cols=229 Identities=14% Similarity=0.075 Sum_probs=141.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCc--eeEeecCCCCCEEEEEecC-CCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeE
Q 010777 223 EGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 299 (501)
Q Consensus 223 ~~~~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (501)
..-+|+.||..|...+|..... .......|...|+-+.=.- ..-.+..++.|.++++.++..+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 3468999999999999987632 2223334444443222111 123477788999999998866543333222222255
Q ss_pred EEecCCCceEE-EecCCCeEEEEEcCCCc--ceeee-cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeee--
Q 010777 300 DVDWRNNVSFA-TSSTDNMIYVCKIGENR--PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-- 373 (501)
Q Consensus 300 ~~~~~~~~~~~-~~~~d~~i~~~~~~~~~--~~~~~-~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~-- 373 (501)
...+.++..+. +.++...|+.|.+.... .+.++ ..-...-.+..|+.....+|++..||++.|||++.......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 56666665554 44666778888775432 23322 22233456788999999999999999999999986543321
Q ss_pred ---cccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeC-------CC-CCeEEEEECCCCC
Q 010777 374 ---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HR-EPVYSLAFSPTGE 442 (501)
Q Consensus 374 ---~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-------h~-~~v~~l~~spdg~ 442 (501)
-..|.+.+..+.|+|-|.. . +|...-.-+.+.+.|+++++....+.. |. ..|..-.|+.++.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~l------D-LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLL------D-LLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cccCCCCCCceEEEEecCCCcc------e-EEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 2247889999999986642 1 344444567899999998876544321 22 2366677777766
Q ss_pred EEEEEeCCCcEEEEeCC
Q 010777 443 YLASGSLDKSMHIWSLK 459 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~ 459 (501)
-+.+.+.+ .+.-|++.
T Consensus 316 s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 316 SNDVKNEL-QGAEYNIL 331 (344)
T ss_pred ccccccch-hhheeecc
Confidence 55555444 24444443
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.73 E-value=2.3e-07 Score=80.54 Aligned_cols=165 Identities=14% Similarity=0.197 Sum_probs=98.4
Q ss_pred EEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 147 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.++..|+.+=.+-+.+--++.+++|..||.+-+.+...-. ....+....+..-.+.+.-..+++
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~----------------~~~~~i~~~~~~~as~~~~~~~~~ 146 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL----------------ALMSRIPSIHSGSASRKICRHGNS 146 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHH----------------hhhhhcccccccccccceeecccE
Confidence 3444455444444445567889999999999999865310 000000000001111122233444
Q ss_pred EEEEeC-----CCeEEEEECCCceeEe-ecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcceeEeeeeccCCeE
Q 010777 227 LATGSY-----DGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 299 (501)
Q Consensus 227 l~sg~~-----dg~i~iw~~~~~~~~~-~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (501)
+.+++. -+..++|+........ -..-...|++++-+|.. +.+++|+.||.+-+||.+...
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~------------- 213 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA------------- 213 (319)
T ss_pred EecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------------
Confidence 444322 1234455544321111 11122348999989865 556788889999999987642
Q ss_pred EEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q 010777 300 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~s~Dg~i~iwd~~~ 367 (501)
.|+..+..|..+|+.+-|+|. +..|+++++||.+..||..+
T Consensus 214 ---------------------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 214 ---------------------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---------------------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 234456789999999999995 46799999999999999764
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.1e-05 Score=80.05 Aligned_cols=150 Identities=16% Similarity=0.252 Sum_probs=104.7
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
|...|.--+++..+++++-|+.-|.+.+|.-..+..... + ..+....+..+..|++..++|.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------~--~~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------K--NEGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--------------c--ccCccceEEEEEecchhHhhhhhc
Confidence 445566667788899999999999999998665432110 0 011234566678899999999999
Q ss_pred CCCeEEEEECCCce----eEe---ecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc----eeEeeeeccCCeEE
Q 010777 232 YDGQARIWSTNGDL----KCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLD 300 (501)
Q Consensus 232 ~dg~i~iw~~~~~~----~~~---~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~~~~~ 300 (501)
..|.|.|+..+... ... -..|+..|++++|++++..|++|...|+|.+--+.+.. ..+.+....+.|..
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence 99999999765321 111 12378899999999999999999999999988776621 12233334566777
Q ss_pred EecCCCceEEEecCCCe
Q 010777 301 VDWRNNVSFATSSTDNM 317 (501)
Q Consensus 301 ~~~~~~~~~~~~~~d~~ 317 (501)
+++.....+++......
T Consensus 176 lD~~q~~LLVStl~r~~ 192 (726)
T KOG3621|consen 176 LDYLQSYLLVSTLTRCI 192 (726)
T ss_pred eecccceehHhhhhhhh
Confidence 77777666665554433
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=0.00017 Score=66.26 Aligned_cols=243 Identities=16% Similarity=0.135 Sum_probs=139.8
Q ss_pred eeEEEECCC-CCEEEEEECCC-cEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-
Q 010777 156 VCACAWSPA-GSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY- 232 (501)
Q Consensus 156 V~~~~~sp~-~~~l~sgs~D~-~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~- 232 (501)
..+++.+|. +..++.+---| .+.+||..++......... .-+++-+| -.||+||++|++.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----~gRHFyGH----------g~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----PGRHFYGH----------GVFSPDGRLLYTTEND 71 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----CCCEEecC----------EEEcCCCCEEEEeccc
Confidence 346788884 56667776655 4778898776532111100 01122222 368999999999744
Q ss_pred ----CCeEEEEECCC--ceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC
Q 010777 233 ----DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 306 (501)
Q Consensus 233 ----dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (501)
.|.|-|||... .....+..|.-.-..+.+.|+|..|+.+-. =|.-- ..++...-.+
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG--GI~Th-pd~GR~kLNl--------------- 133 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG--GIETH-PDSGRAKLNL--------------- 133 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC--CCccC-cccCceecCh---------------
Confidence 48999999883 334467777666678889999988877632 12110 1111100000
Q ss_pred ceEEEecCCCeEEEEEcCCCcceee--e--cCCCCceeEEEEcCCCCEEEEEeCCCe-------EEEEeCCCCceeeec-
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKT--F--AGHQGEVNCVKWDPTGSLLASCSDDVT-------AKIWNMKQDKYVHDL- 374 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~--~--~~h~~~v~~v~~~~~~~~l~s~s~Dg~-------i~iwd~~~~~~~~~~- 374 (501)
...+-.+...|..++..+.. + .-|...|.-+++.++|..++.+-..|. +-+++. +..+..+
T Consensus 134 -----~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~ 206 (305)
T PF07433_consen 134 -----DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLP 206 (305)
T ss_pred -----hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceecc
Confidence 01111122222333333322 2 225567777888887776665544442 223322 2211111
Q ss_pred ------ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEe
Q 010777 375 ------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 448 (501)
Q Consensus 375 ------~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs 448 (501)
....+.+-+|++++++. .+.+|+=.-|.+.+||..+++.+....- ..+..|+-.+++ |++|.+
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~g~--------~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRDGR--------LIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred CChHHHHhhCCceEEEEEeCCCC--------EEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC
Confidence 23346788999998875 3567777889999999999998866542 246677777776 666655
Q ss_pred C
Q 010777 449 L 449 (501)
Q Consensus 449 ~ 449 (501)
.
T Consensus 276 ~ 276 (305)
T PF07433_consen 276 Q 276 (305)
T ss_pred C
Confidence 3
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.2e-05 Score=80.64 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=121.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 215 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 215 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
++|++++ +++|+-|..+|.|++.+.++.. .+...|... ...|.|++|||.||+|.|-.+-+.+...++.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df- 111 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF- 111 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-
Confidence 4455554 4689999999999999987765 333344433 56799999999999999887655443222211
Q ss_pred cCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCC-----CCEEEEEeCCCeEEEEeCC---
Q 010777 295 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----GSLLASCSDDVTAKIWNMK--- 366 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~s~Dg~i~iwd~~--- 366 (501)
..++.+++++|+ .+.+++|+.-| +.++.-+
T Consensus 112 -----------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 112 -----------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred -----------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 235778888887 46789999988 6665421
Q ss_pred CCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCe------EEEEECCC
Q 010777 367 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV------YSLAFSPT 440 (501)
Q Consensus 367 ~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v------~~l~~spd 440 (501)
....+ .+....++|+++.|.-+ ++|=++.+| |++||+.+++.+..+..-...+ ..+.|.++
T Consensus 150 nk~~v-~l~~~eG~I~~i~W~g~-----------lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~ 216 (846)
T KOG2066|consen 150 NKDSV-VLSEGEGPIHSIKWRGN-----------LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE 216 (846)
T ss_pred Cccce-eeecCccceEEEEecCc-----------EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC
Confidence 11112 34556789999999643 677777666 9999999888877665332222 35778776
Q ss_pred CCEEEEEeCCCcEEEEeCCCC
Q 010777 441 GEYLASGSLDKSMHIWSLKEG 461 (501)
Q Consensus 441 g~~lasgs~Dg~i~iw~~~~~ 461 (501)
.++ +. |+.-+|+|..++.+
T Consensus 217 ~~L-VI-GW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 217 DRL-VI-GWGDSVKICSIKKR 235 (846)
T ss_pred CeE-EE-ecCCeEEEEEEecc
Confidence 554 43 34557999888743
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=1.8e-05 Score=78.99 Aligned_cols=233 Identities=16% Similarity=0.200 Sum_probs=164.3
Q ss_pred EEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCC-------------ceEEEecCCCeEEEEE
Q 010777 256 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-------------VSFATSSTDNMIYVCK 322 (501)
Q Consensus 256 V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~d~~i~~~~ 322 (501)
-.++.|+|.| .|+-|+ -..|.+-|.++-+.++.+..|...+..+.|.+. ..++++.-.|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4678899988 333343 467899999999999999999999999988421 2456667789999999
Q ss_pred cCCCcceeeecCCCCceeEEEEcCC---C-CEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCC
Q 010777 323 IGENRPIKTFAGHQGEVNCVKWDPT---G-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQ 398 (501)
Q Consensus 323 ~~~~~~~~~~~~h~~~v~~v~~~~~---~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~ 398 (501)
......+..+..|..++..++|-|. . .+|+.-+...++.+|+..+|..+-..........++.+.|-..
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~------- 168 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS------- 168 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc-------
Confidence 9888888888888999999998763 3 4566667778999999999987766655556667788877543
Q ss_pred cEEEEEEeCCCeEEEEeCC-------CCeEEEEeeCCCC-----------------C--------eEEEEECCCCCEEEE
Q 010777 399 QLILASASFDSTVKLWDVE-------LGKLLYSLNGHRE-----------------P--------VYSLAFSPTGEYLAS 446 (501)
Q Consensus 399 ~~~l~sgs~dg~i~iwd~~-------~~~~~~~~~~h~~-----------------~--------v~~l~~spdg~~las 446 (501)
..+.+.| ..|.+.+-+.- .++..+.-..|.. + ...++|+|.-+-++-
T Consensus 169 rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 169 RHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred ceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 1233333 34555555431 1333333233322 0 113578888766655
Q ss_pred EeCCCcEEEEeCCCCeeEEEEec-CCCEEEEEECCCCC--EEEEEECCCeEEEEE
Q 010777 447 GSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD--KIAACFANHTVCVLD 498 (501)
Q Consensus 447 gs~Dg~i~iw~~~~~~~~~~~~~-~~~i~~~~ws~~g~--~la~~~~d~~v~v~~ 498 (501)
......+.|+|++-...+....- .+++--+.|-|+++ .|.+...||.+.+|-
T Consensus 248 i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 248 ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 66778899999987766665543 34566788999885 777888999998873
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1e-05 Score=74.87 Aligned_cols=243 Identities=14% Similarity=0.146 Sum_probs=132.6
Q ss_pred cCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCcee-EeecCCCCCEEEEEecCCC-CEEEEEecCCeEEEEeCCCcc
Q 010777 210 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 210 ~~~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~i~iwd~~~~~ 286 (501)
.+...|..++|||..+ ++..++.+..|+|.|+..... ..+..| .++++++|.-+. ++++.|-..|.|.|||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4567799999999877 788999999999999876543 345555 789999998765 688999999999999997543
Q ss_pred e-eEeee--eccCCeEEEecCC-------CceEEEecCCCeEEEEEcC--CCcceeeec-CCCCceeEEEEcCCCCEE-E
Q 010777 287 W-KQQFE--FHSGPTLDVDWRN-------NVSFATSSTDNMIYVCKIG--ENRPIKTFA-GHQGEVNCVKWDPTGSLL-A 352 (501)
Q Consensus 287 ~-~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~d~~i~~~~~~--~~~~~~~~~-~h~~~v~~v~~~~~~~~l-~ 352 (501)
- ...+. ....|+..+.+.. ...++.+..+-. .|.+. .+.+..++. +..+.+.++++++-.+++ +
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~--f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQ--FYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehhhh--hhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence 1 11111 1223444444321 222222222221 22221 111111111 123445555555544443 3
Q ss_pred EEeCCC---eEE---E-EeCCCCceeeecc-cC-CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE
Q 010777 353 SCSDDV---TAK---I-WNMKQDKYVHDLR-EH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 423 (501)
Q Consensus 353 s~s~Dg---~i~---i-wd~~~~~~~~~~~-~~-~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 423 (501)
|--.+. +++ . -|...+.++...+ .+ ...-..+ +........++..+++..|...+.+.+||..+.+.++
T Consensus 348 tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl--~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 348 TYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL--STTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EecCCCCCccceeeeeeeccccCceeeeecccccCCccccc--ccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 332211 011 1 0112222221111 11 0000000 0000000112234577788888999999999999998
Q ss_pred EeeCCCCCeEEEEECCC--CCEEEEEeCCCcEEEEeCC
Q 010777 424 SLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLK 459 (501)
Q Consensus 424 ~~~~h~~~v~~l~~spd--g~~lasgs~Dg~i~iw~~~ 459 (501)
++. ...+|.++..... +.||++-. |..++||..+
T Consensus 426 ~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 426 TLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred ecc-cCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 886 4478888876442 35676655 5568887653
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=5.5e-06 Score=72.22 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=95.8
Q ss_pred eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc-eeEeeeeccCCeEEEecCCCceEEEecCC------CeEEE
Q 010777 248 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTD------NMIYV 320 (501)
Q Consensus 248 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~~ 320 (501)
.+..|..+-..-..+--++.+++++.||.+.+.+.+.-. .............+..+.....++.+..= +..+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 344555433232334446779999999999999875411 01111100000111111112223333222 23344
Q ss_pred EEcCCCcceeeecCCCCceeEEEEcCCC-CEEEEEeCCCeEEEEeCCCCce-eeecccCCCCEEEEEEcCCCCCCCCCCC
Q 010777 321 CKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQ 398 (501)
Q Consensus 321 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~p~g~~~~~~~~ 398 (501)
|+++..+....-......|.+++-+|.. +++++|+.||.+-+||++.... +..+..|..++..+.|+|....
T Consensus 164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~------ 237 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE------ 237 (319)
T ss_pred ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch------
Confidence 5544322211111112348899999975 5677889999999999987754 4456789999999999987542
Q ss_pred cEEEEEEeCCCeEEEEeCCC
Q 010777 399 QLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 399 ~~~l~sgs~dg~i~iwd~~~ 418 (501)
-|++++.||.+--||..+
T Consensus 238 --~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 --HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --heeEecCCCcEEEEcCCC
Confidence 478999999999998764
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.51 E-value=0.00011 Score=77.38 Aligned_cols=196 Identities=13% Similarity=0.245 Sum_probs=124.3
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 010777 154 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 233 (501)
Q Consensus 154 ~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 233 (501)
+.|.++.|..++.-++.+..+|.|.+-|..+... ... + .....|.+++||||...++..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------eiv----g---~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------EIV----G---NVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-----------eee----e---eccCceEEEeecCCCcEEEEEeCC
Confidence 6799999999999888899999999887665421 111 1 124569999999999999999988
Q ss_pred CeEEEEECC------C------------------ceeEeecCCCC---------------------CEEEEEecCCCCEE
Q 010777 234 GQARIWSTN------G------------------DLKCTLSKHKG---------------------PIFSLKWNKKGDYL 268 (501)
Q Consensus 234 g~i~iw~~~------~------------------~~~~~~~~h~~---------------------~V~~l~~~~~~~~l 268 (501)
+++.+-+.. . .....|.+..+ .=+++.|.-+|.+|
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence 888775421 0 00112221111 11358999999998
Q ss_pred EEE-----ecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEe----cCCCeEEEEEcCC---CcceeeecCCC
Q 010777 269 LTG-----SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS----STDNMIYVCKIGE---NRPIKTFAGHQ 336 (501)
Q Consensus 269 ~s~-----s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~i~~~~~~~---~~~~~~~~~h~ 336 (501)
++. ..-+.|++||-+ +.+...-....+.-.++.|.+...++++ +.++.|.++.... +.-...+....
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 872 223899999966 4433333333334456778765444333 3445566665432 11111222233
Q ss_pred CceeEEEEcCCCCEEEE---EeCCCeEEEEeCCCC
Q 010777 337 GEVNCVKWDPTGSLLAS---CSDDVTAKIWNMKQD 368 (501)
Q Consensus 337 ~~v~~v~~~~~~~~l~s---~s~Dg~i~iwd~~~~ 368 (501)
.+|..++|+.++..||. +.....|++|-+.+-
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 45899999999999887 555556999976543
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=1.1e-05 Score=81.13 Aligned_cols=106 Identities=25% Similarity=0.439 Sum_probs=80.7
Q ss_pred EEECCCCCEEEEEE----CCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 159 CAWSPAGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 234 (501)
Q Consensus 159 ~~~sp~~~~l~sgs----~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 234 (501)
.+|+|...++|.++ .-|+|.||- .+|.... . ....-.+++++|+|..-.|++|-.-|
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-------------~-----Vt~P~hatSLCWHpe~~vLa~gwe~g 81 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-------------D-----VTYPVHATSLCWHPEEFVLAQGWEMG 81 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-------------c-----cccceehhhhccChHHHHHhhccccc
Confidence 46888888888776 346777773 3332110 0 00122367899999999999999999
Q ss_pred eEEEEECCCceeEe-ecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCC
Q 010777 235 QARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 283 (501)
Q Consensus 235 ~i~iw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~ 283 (501)
.+.+|..+.....+ ...|+.+|..+.|+++|..|+++..-|.|.+|...
T Consensus 82 ~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 82 VSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999987655544 45699999999999999999999999999999654
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=1e-05 Score=81.29 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=119.5
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEE
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 385 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 385 (501)
...|+.+.-+|.+++.+..... .+...|+.. .-+|.+++|||.||+|.|-.+.+.+..+++. ...++.+|+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia 119 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA 119 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence 3456777778888887765442 222233332 5579999999999999999888776655443 346889999
Q ss_pred EcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC--CCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 386 WSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 386 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
++|+-... +...+++|+.-| +.++.-+ ..+.-..+..-.++|.++.|. |++||-++.+| |+|||+.+++.
T Consensus 120 l~Pd~~~~----~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 120 LHPDFSRQ----QSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred eccchhhh----hhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence 99982211 112577888888 7776422 111111344556899999995 67999999887 99999999887
Q ss_pred EEEEecCC-------CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 464 VKTYTGNG-------GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 464 ~~~~~~~~-------~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+..++... -...+.|.++. .|+.|-.| +|.|..+|
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 76664421 13578998875 55666555 67777665
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.48 E-value=0.00057 Score=62.82 Aligned_cols=205 Identities=12% Similarity=0.138 Sum_probs=130.2
Q ss_pred EEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC-CCCCEEEEEeCCCe
Q 010777 158 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-GEGTLLATGSYDGQ 235 (501)
Q Consensus 158 ~~~~sp-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~sg~~dg~ 235 (501)
+++|.+ ++.++++--..+.|..|+..++... .. . ......+++. +++. |+.+...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~~-~--------~~~~~G~~~~~~~g~-l~v~~~~~- 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------VI-D--------LPGPNGMAFDRPDGR-LYVADSGG- 61 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------EE-E--------SSSEEEEEEECTTSE-EEEEETTC-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------EE-e--------cCCCceEEEEccCCE-EEEEEcCc-
Confidence 578998 6777778778899999998765310 00 0 1125566676 5655 45555544
Q ss_pred EEEEECCCceeEeec-----C-CCCCEEEEEecCCCCEEEEEecC--------CeEEEEeCCCcceeEeeeeccCCeEEE
Q 010777 236 ARIWSTNGDLKCTLS-----K-HKGPIFSLKWNKKGDYLLTGSCD--------KTAIVWDVKTEEWKQQFEFHSGPTLDV 301 (501)
Q Consensus 236 i~iw~~~~~~~~~~~-----~-h~~~V~~l~~~~~~~~l~s~s~D--------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 301 (501)
+.++|........+. . .......+++.|+|+..++.+.. +.|..++.. ++..... ........+
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi 139 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGI 139 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccce
Confidence 455586654332221 1 23456889999999977766543 557777776 4433332 233445566
Q ss_pred ecCCC--ceEEEecCCCeEEEEEcCCCcc----eee---ecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceee
Q 010777 302 DWRNN--VSFATSSTDNMIYVCKIGENRP----IKT---FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 372 (501)
Q Consensus 302 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~----~~~---~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 372 (501)
.|.++ ..+++-+..+.|+.+++..... ... +..-.+....+++..+|++.++....+.|.+++.. ++.+.
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 66543 4566778889999998864322 122 22223458899999999999988889999999987 87777
Q ss_pred ecccCCCCEEEEEEc
Q 010777 373 DLREHSKEIYTIRWS 387 (501)
Q Consensus 373 ~~~~~~~~v~~i~~~ 387 (501)
.+......+++++|.
T Consensus 219 ~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 219 EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSEEEEEEE
T ss_pred EEcCCCCCEEEEEEE
Confidence 777665688999984
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.47 E-value=4.5e-06 Score=84.65 Aligned_cols=178 Identities=18% Similarity=0.188 Sum_probs=128.4
Q ss_pred ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEE
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 386 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 386 (501)
..++.++-...+..+|+.+.+..+...-..+.|.-++ .+++++.+|...|+|.+-|.++.+.++++..|.+.+..+..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 3455566666677777777665555443343454444 46889999999999999999999999999999998877654
Q ss_pred cCCCCCCCCCCCcEEEEEEeC---------CCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCC-CEEEEEeCCCcEEEE
Q 010777 387 SPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIW 456 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~lasgs~Dg~i~iw 456 (501)
.|. +|++++. |..|++||++.-+.+..+.-+.++ .=+.|+|.- ..+|.+|..|...+-
T Consensus 226 --~GN---------lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 226 --QGN---------LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred --cCC---------eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 332 5666664 567899999987776555544444 446788873 567888889999998
Q ss_pred eCCC---Ce-eEEEEecCC-CEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 457 SLKE---GK-IVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 457 ~~~~---~~-~~~~~~~~~-~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
|..+ -. -+.-....+ .+..+++|+.|+.||.|..+|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8332 11 122222333 489999999999999999999999994
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.46 E-value=5.5e-05 Score=75.84 Aligned_cols=172 Identities=10% Similarity=0.139 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCC
Q 010777 316 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 395 (501)
Q Consensus 316 ~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~ 395 (501)
+.+.+.|..+.+...++.- .+....++++|+|+++++.+.+. ..+..+..+...... ..+.|++.+.....
T Consensus 215 ~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni~~iea~v 285 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNIARIEEAV 285 (635)
T ss_pred EEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEchHHHHHhh
Confidence 4455556555443333221 12335678899999987776322 111122222111111 33444443211111
Q ss_pred CCCcEEEEEEeCCCeEEEEeCCC-----CeEEEEeeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCCe-------
Q 010777 396 PNQQLILASASFDSTVKLWDVEL-----GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------- 462 (501)
Q Consensus 396 ~~~~~~l~sgs~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~spdg~~lasgs-~Dg~i~iw~~~~~~------- 462 (501)
++.+..++ .++.|.+.|.++ ...+..+. -......+++||||+++++++ .+.+|.|.|+.+.+
T Consensus 286 kdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 KAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hCCCEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 22223333 257899999988 34555554 334568899999999887655 58999999998754
Q ss_pred -----eEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 463 -----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 463 -----~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
++....-.-+....+|.++|+...+.+.|..|..||+.
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 23444434456889999999988899999999999974
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.44 E-value=8.9e-05 Score=73.35 Aligned_cols=258 Identities=8% Similarity=0.029 Sum_probs=145.0
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEeecCCC---------C-CEE-EEEecCCCCEEEEEecCCeEEEEeCCCcceeEee
Q 010777 224 GTLLATGSYDGQARIWSTN-GDLKCTLSKHK---------G-PIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 291 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~---------~-~V~-~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 291 (501)
+..++.++.+|.+..+|.. ++......-.. . .+. .+.. .+..++.++.++.+..+|..+++..-.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 4456666677777777754 44333221111 0 000 0111 3457788888999999999998866555
Q ss_pred eeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCce-----eEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 292 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
............ .+..++.+..++.++.+|..+++.+-.+......+ .+... .+..++.++.+|.+..+|..
T Consensus 147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 432211100011 12345556678889999988887665543221100 11111 12356667788999999988
Q ss_pred CCceeeecccCCC----C---EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECC
Q 010777 367 QDKYVHDLREHSK----E---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 439 (501)
Q Consensus 367 ~~~~~~~~~~~~~----~---v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 439 (501)
+++.+-....... . ...+.-+|-- ..+ .+..++.+|.+..+|..+|+.++...-. ....+..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-----~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~-- 292 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVV-----VGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV-- 292 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEE-----ECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--
Confidence 8876543321100 0 0000011100 011 3455667899999999999988765421 1112222
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEec--CCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 440 TGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 440 dg~~lasgs~Dg~i~iw~~~~~~~~~~~~~--~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.+..|..++.+|.|..+|..+|+.+..... .....+... .+..|..+..+|.|+++|.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 456777788999999999999987765432 111122221 2567778888888888775
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.8e-06 Score=80.70 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=137.6
Q ss_pred ccCCeEEEecCCCceEEEecCCCeEEEEEcCC---CcceeeecCCCCceeEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc
Q 010777 294 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---NRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDK 369 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~-Dg~i~iwd~~~~~ 369 (501)
|...+..+-..-...+.+++.||.+..|.-.. -.-++.+..|.+.|.+++.+.++.++.|.+. |..++++|+..-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 33334444444455678899999999997543 1234556778889999999999999999888 9999999987654
Q ss_pred eeeeccc--CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--eEEEEeeCCCCCeEEEEECCCCCEEE
Q 010777 370 YVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLNGHREPVYSLAFSPTGEYLA 445 (501)
Q Consensus 370 ~~~~~~~--~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~spdg~~la 445 (501)
.+.-++. .++.+.. -.+|... . ..+-++.-.+|.|.++|-... ...+.-.-|..+|..+.++|-+..++
T Consensus 88 minmiKL~~lPg~a~w-v~skGd~-~-----s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEW-VTSKGDK-I-----SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred hhhhcccccCCCceEE-ecCCCCe-e-----eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 4322222 1221111 1122111 0 013344456789999997643 33445566999999999999999999
Q ss_pred EEeCCCcEEEEeCCC------CeeEEEE----------ecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 446 SGSLDKSMHIWSLKE------GKIVKTY----------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 446 sgs~Dg~i~iw~~~~------~~~~~~~----------~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+....|.|.-|.... .++...+ .......++.|+|+|..++.-..|..|++++++
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 998899999999872 2222112 223456899999999999999999999999876
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.43 E-value=0.00056 Score=66.48 Aligned_cols=288 Identities=16% Similarity=0.215 Sum_probs=147.3
Q ss_pred CCCCCEEEEEE---------CCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC
Q 010777 162 SPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 232 (501)
Q Consensus 162 sp~~~~l~sgs---------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 232 (501)
|||+++++... ..+.+.|||+.++... .+.. ....+....|||+|++++-..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--------------~l~~----~~~~~~~~~~sP~g~~~~~v~- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--------------PLTP----PPPKLQDAKWSPDGKYIAFVR- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--------------ESS-----EETTBSEEEE-SSSTEEEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--------------ECcC----CccccccceeecCCCeeEEEe-
Confidence 67888776632 2356778888765311 1100 034578899999999998876
Q ss_pred CCeEEEEECCCceeEeecCCC------------------CCEEEEEecCCCCEEEEEecC-CeEEEEeCC---CcceeEe
Q 010777 233 DGQARIWSTNGDLKCTLSKHK------------------GPIFSLKWNKKGDYLLTGSCD-KTAIVWDVK---TEEWKQQ 290 (501)
Q Consensus 233 dg~i~iw~~~~~~~~~~~~h~------------------~~V~~l~~~~~~~~l~s~s~D-~~i~iwd~~---~~~~~~~ 290 (501)
++.|.+++..+.....+.... +.-.++-|+|++++|+....| ..|+.+.+. .... .
T Consensus 62 ~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--~ 139 (353)
T PF00930_consen 62 DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--Q 139 (353)
T ss_dssp TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--S
T ss_pred cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--c
Confidence 578999986544333222111 112467899999998876654 334444321 1100 0
Q ss_pred eeeccCCeEEEecCCCceEEEecC--CCeEEEEEcCCCcceee--e---cCCCCceeEEEEcCCCCEEE--EEeCCC---
Q 010777 291 FEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGENRPIKT--F---AGHQGEVNCVKWDPTGSLLA--SCSDDV--- 358 (501)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~~--~---~~h~~~v~~v~~~~~~~~l~--s~s~Dg--- 358 (501)
-..+..+.+.. .|.. .-.++++++.+++.... . ..-...+..+.|.++++.|+ ....+.
T Consensus 140 ----yp~~~~~~YPk-----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~ 210 (353)
T PF00930_consen 140 ----YPEVESIRYPK-----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL 210 (353)
T ss_dssp ----S-EEEEEE--B-----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred ----CCcccccccCC-----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence 00011111110 0000 11356677766654221 1 23345688999999998333 333333
Q ss_pred eEEEEeCCCCceeeeccc-CCCC---EEEEEEc-CCCCCCCCCCCcEEEEEEeCCCeEEE--EeCCCCeEEEEeeCCCCC
Q 010777 359 TAKIWNMKQDKYVHDLRE-HSKE---IYTIRWS-PTGSGTNNPNQQLILASASFDSTVKL--WDVELGKLLYSLNGHREP 431 (501)
Q Consensus 359 ~i~iwd~~~~~~~~~~~~-~~~~---v~~i~~~-p~g~~~~~~~~~~~l~sgs~dg~i~i--wd~~~~~~~~~~~~h~~~ 431 (501)
.+.++|..++.....+.. .... .....|. +++. .+|.....+|.-+| ++...+. ...+....-.
T Consensus 211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~--------~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~ 281 (353)
T PF00930_consen 211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN--------EFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWE 281 (353)
T ss_dssp EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS--------EEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-
T ss_pred EEEEEECCCCceeEEEEecCCcceeeecccccccCCCC--------EEEEEEEcCCCcEEEEEcccccc-eeccccCcee
Confidence 355667766544222211 1111 1123332 3332 24444447776444 4555554 3455555566
Q ss_pred eEE-EEECCCCCEEE-EEeCC----CcEEEEeCC-CCeeEEEEecCCCE-EEEEECCCCCEEEEEE
Q 010777 432 VYS-LAFSPTGEYLA-SGSLD----KSMHIWSLK-EGKIVKTYTGNGGI-FEVCWNKEGDKIAACF 489 (501)
Q Consensus 432 v~~-l~~spdg~~la-sgs~D----g~i~iw~~~-~~~~~~~~~~~~~i-~~~~ws~~g~~la~~~ 489 (501)
|+. +.|+++++.|. +|..+ ..|..-++. .+.+ ..++..... ..+.|||+|++++..+
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEE
Confidence 755 68888877654 55543 245555666 4444 444443332 6999999999887543
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-05 Score=73.93 Aligned_cols=241 Identities=12% Similarity=0.147 Sum_probs=139.6
Q ss_pred eecCCCCCEEEEEecCCCC-EEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC--CCceEEEecCCCeEEEEEcC
Q 010777 248 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIG 324 (501)
Q Consensus 248 ~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~ 324 (501)
.+.+|...|..++|+|..+ .+..++.+.+|+|.|+++..++..+..+ .++.+..|. +...+..+-..|.|+++|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5677888999999999887 6788999999999999999988888877 677777774 33455677789999999998
Q ss_pred CCc-ceeeecC--CCCceeEE------EEcCCCCEEEEEeCCCeEEEEeCCC--Cceeeecc-cCCCCEEEEEEcCCCCC
Q 010777 325 ENR-PIKTFAG--HQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQ--DKYVHDLR-EHSKEIYTIRWSPTGSG 392 (501)
Q Consensus 325 ~~~-~~~~~~~--h~~~v~~v------~~~~~~~~l~s~s~Dg~i~iwd~~~--~~~~~~~~-~~~~~v~~i~~~p~g~~ 392 (501)
... ++..+.+ ...+|..+ ...+.|.+++..+.+ +..|.+.- +.....+. +..+.+.+..+.+-..
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn- 343 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN- 343 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc-
Confidence 653 3333322 11233333 234455666555544 44565421 11111111 1123333333322111
Q ss_pred CCCCCCcEEEEEEeCCCe---EE----EEeCCCCeEEEEe-eCCCC----C---eEEEEECCCCCEEE-EEeCCCcEEEE
Q 010777 393 TNNPNQQLILASASFDST---VK----LWDVELGKLLYSL-NGHRE----P---VYSLAFSPTGEYLA-SGSLDKSMHIW 456 (501)
Q Consensus 393 ~~~~~~~~~l~sgs~dg~---i~----iwd~~~~~~~~~~-~~h~~----~---v~~l~~spdg~~la-sgs~Dg~i~iw 456 (501)
.+|+|.-.+-+ ++ --|-.+|..+... .++.+ . -..+.-.++.++|+ .|...+.+.+|
T Consensus 344 -------h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 344 -------HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred -------eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 12332221100 00 0111222222111 11100 0 01122245556665 45566899999
Q ss_pred eCCCCeeEEEEecCCCEEEEEE-CCCCCEEEEEECCCeEEEEEe
Q 010777 457 SLKEGKIVKTYTGNGGIFEVCW-NKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 457 ~~~~~~~~~~~~~~~~i~~~~w-s~~g~~la~~~~d~~v~v~~~ 499 (501)
|..+++++++++....+.+++- ...|+-+.+...|..|+||-.
T Consensus 417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred ccchhheeeecccCcceeecceeecCCcchhhheecceEEEEec
Confidence 9999999999998888998884 445655555555667888854
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00012 Score=74.44 Aligned_cols=212 Identities=11% Similarity=0.090 Sum_probs=133.9
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCC-EEEEEecCCCCEEEEEecCC-----eEEEEeCCCcceeEeee
Q 010777 219 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFE 292 (501)
Q Consensus 219 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~D~-----~i~iwd~~~~~~~~~~~ 292 (501)
+|++.+..++.|+.+|.|.+.+..-.....+..+... |..+....+.++|++-+.|+ .++||++...+--
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n---- 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN---- 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC----
Confidence 4688889999999999999988766665677777766 55554444446888877765 4899998643200
Q ss_pred eccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC--C--C
Q 010777 293 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK--Q--D 368 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~--~--~ 368 (501)
..| .++ +.++++... +.....++.+++.+.+-+.+|+|-.+|.|.++.-. . +
T Consensus 106 --~sP-~c~--------------~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 106 --NSP-QCL--------------YEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred --CCc-cee--------------eeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 000 000 001111110 11124568889999999999999999999988421 1 1
Q ss_pred ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEeeCCCCCeEEEEECCCCCEEEEE
Q 010777 369 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASG 447 (501)
Q Consensus 369 ~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spdg~~lasg 447 (501)
....-......+|+.+++..++.. .+..+ ....|.+|.+....+ +..+..|..+++|.+|++...-+++|
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s--------~lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKS--------VLFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCce--------eEEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 111111223568999999887752 22222 245799999884443 34477788899999999876634444
Q ss_pred eCCCcEEEEeCCCCeeEEEEe
Q 010777 448 SLDKSMHIWSLKEGKIVKTYT 468 (501)
Q Consensus 448 s~Dg~i~iw~~~~~~~~~~~~ 468 (501)
+ ...|.+|+....+.-.++.
T Consensus 233 ~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 233 G-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred c-CceEEEEcCCCcceeeeec
Confidence 3 3459999987655555554
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.38 E-value=0.0011 Score=60.90 Aligned_cols=227 Identities=14% Similarity=0.146 Sum_probs=133.0
Q ss_pred EEEEecC-CCCEEEEEecCCe-EEEEeCCCcceeEeeeeccCCeE--EEecC-CCceEEEe-----cCCCeEEEEEcC-C
Q 010777 257 FSLKWNK-KGDYLLTGSCDKT-AIVWDVKTEEWKQQFEFHSGPTL--DVDWR-NNVSFATS-----STDNMIYVCKIG-E 325 (501)
Q Consensus 257 ~~l~~~~-~~~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~-----~~d~~i~~~~~~-~ 325 (501)
.+++.+| ....++.+-.-|+ ..+||.++++....+....+.-+ ...|. +...+.+. ...|.|-|||.. .
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4567788 4455666666665 57889998887765543222211 11232 23333333 345789999998 4
Q ss_pred CcceeeecCCCCceeEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCceeee--c--ccCCCCEEE
Q 010777 326 NRPIKTFAGHQGEVNCVKWDPTGSLLASCS------------------DDVTAKIWNMKQDKYVHD--L--REHSKEIYT 383 (501)
Q Consensus 326 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s------------------~Dg~i~iwd~~~~~~~~~--~--~~~~~~v~~ 383 (501)
-+.+..|..|.-.--.+.+.|||+.|+.+- .+-.+.+-|..++..+.. + ..|...+..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 566777777665566788999997666541 122344556677776655 3 236677888
Q ss_pred EEEcCCCCCCC-------CCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEE-EEeCCCcEEE
Q 010777 384 IRWSPTGSGTN-------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHI 455 (501)
Q Consensus 384 i~~~p~g~~~~-------~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~la-sgs~Dg~i~i 455 (501)
+++.++|.... ......+++.-..++.++........ ...-..-|-+|+++++|.+++ |+-.-+.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~----~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQ----WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHH----HHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 89888875100 00011123322222223332221110 112235588999999998775 4557789999
Q ss_pred EeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEE
Q 010777 456 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF 489 (501)
Q Consensus 456 w~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~ 489 (501)
||..+|+++....-. .+..++-.+++ ++++.+
T Consensus 244 ~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 244 WDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EECCCCCEeeccccC-ceeeeeecCCc-eEEeCC
Confidence 999999988765432 34566666666 444433
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.32 E-value=0.00041 Score=70.51 Aligned_cols=271 Identities=11% Similarity=0.076 Sum_probs=146.9
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEeecCCCC------CEE--EEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeecc
Q 010777 225 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG------PIF--SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 295 (501)
Q Consensus 225 ~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~------~V~--~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 295 (501)
..++.++.++.+...|.. ++....+..... .+. .+... ++..++.++.++.|..+|.++++.+-.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 355666677888877764 333333221111 110 11111 22678888899999999999998776554332
Q ss_pred CC-----e-EEEecCCCceEEEe--------cCCCeEEEEEcCCCcceeeecCCCC--------------------ce-e
Q 010777 296 GP-----T-LDVDWRNNVSFATS--------STDNMIYVCKIGENRPIKTFAGHQG--------------------EV-N 340 (501)
Q Consensus 296 ~~-----~-~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~~~~h~~--------------------~v-~ 340 (501)
.. + ..........++.+ ..++.++.+|..+++.+-.+..... .+ .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 10 0 00111123333322 2357788888877766544432110 11 1
Q ss_pred EEEEcCCCCEEEEEeCCC------------------eEEEEeCCCCceeeecccCCCCEE--EEEEcCCCCC--CCCCCC
Q 010777 341 CVKWDPTGSLLASCSDDV------------------TAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSG--TNNPNQ 398 (501)
Q Consensus 341 ~v~~~~~~~~l~s~s~Dg------------------~i~iwd~~~~~~~~~~~~~~~~v~--~i~~~p~g~~--~~~~~~ 398 (501)
..++.+.+.+++.++.++ .|.-+|..+++.+-.++....... .....|.-.. ......
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 344555566777776655 688889888887655432111111 0000000000 000011
Q ss_pred cEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEE-----------------EeCCCcEEEEeCCCC
Q 010777 399 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-----------------GSLDKSMHIWSLKEG 461 (501)
Q Consensus 399 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~las-----------------gs~Dg~i~iw~~~~~ 461 (501)
..+++.++.+|.+...|.++|+.++..... ...++.+| +..++. ...+|.|.-.|+.+|
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 135677888999999999999999876421 12234455 222221 124678999999999
Q ss_pred eeEEEEecC---------CCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 462 KIVKTYTGN---------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 462 ~~~~~~~~~---------~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
+.+...... .....-.....+..|.+++.+|.|+.+|.+
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence 988776543 111110111255788888889998888753
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.32 E-value=0.0029 Score=64.28 Aligned_cols=295 Identities=14% Similarity=0.157 Sum_probs=158.2
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeE--EEEECCCCCEEEEEeCCCeEEEEECC
Q 010777 165 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT--TLDWNGEGTLLATGSYDGQARIWSTN 242 (501)
Q Consensus 165 ~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~s~~~~~l~sg~~dg~i~iw~~~ 242 (501)
+..++.++.++.|.-.|..+++.......... .......+. .++.. ++..++.++.++.|+.+|..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~-----------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLP-----------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAE 128 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCC-----------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECC
Confidence 45667777889999899888765432211100 000000000 01111 22577778889999999975
Q ss_pred -CceeEeecCCCC--CEEEEEecC--CCCEEEEEe---------cCCeEEEEeCCCcceeEeeeeccCCe----------
Q 010777 243 -GDLKCTLSKHKG--PIFSLKWNK--KGDYLLTGS---------CDKTAIVWDVKTEEWKQQFEFHSGPT---------- 298 (501)
Q Consensus 243 -~~~~~~~~~h~~--~V~~l~~~~--~~~~l~s~s---------~D~~i~iwd~~~~~~~~~~~~~~~~~---------- 298 (501)
++....+..... .-..+.-+| .+..++.++ .++.+..+|..+++..-.+.......
T Consensus 129 TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 129 TGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc
Confidence 444443322111 000111111 123455543 36789999999998766554421110
Q ss_pred -------------EEEecCCCceEEEecCC------------------CeEEEEEcCCCcceeeec--CCCC----ceeE
Q 010777 299 -------------LDVDWRNNVSFATSSTD------------------NMIYVCKIGENRPIKTFA--GHQG----EVNC 341 (501)
Q Consensus 299 -------------~~~~~~~~~~~~~~~~d------------------~~i~~~~~~~~~~~~~~~--~h~~----~v~~ 341 (501)
..++... ..++.++.+ +.++-++..+++.+-.+. .|.. ....
T Consensus 209 ~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred ceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence 0111112 233333333 268888888877665543 1110 0000
Q ss_pred EEEc----CCCC---EEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEE----------
Q 010777 342 VKWD----PTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS---------- 404 (501)
Q Consensus 342 v~~~----~~~~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~s---------- 404 (501)
..+. -++. .++.++.+|.+...|..+++.+-...... ..+..+| + ..++.+
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~--------~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-G--------LVYLGAFHIPLGLPPQ 355 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-c--------eEEEccccccccCccc
Confidence 0111 1333 57788899999999999998775432110 0111222 1 112111
Q ss_pred ------EeCCCeEEEEeCCCCeEEEEeeCCC--------CCe--EEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe
Q 010777 405 ------ASFDSTVKLWDVELGKLLYSLNGHR--------EPV--YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 468 (501)
Q Consensus 405 ------gs~dg~i~iwd~~~~~~~~~~~~h~--------~~v--~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~ 468 (501)
...+|.|.-.|+.+|+.+++..... .+. ..++. .+.+|+.++.||.|+.+|..+|+++..+.
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 1246789999999999988765321 111 11222 45688889999999999999999998887
Q ss_pred cCCCEEE--EEECCCCCEEE
Q 010777 469 GNGGIFE--VCWNKEGDKIA 486 (501)
Q Consensus 469 ~~~~i~~--~~ws~~g~~la 486 (501)
....+.. +.+..+|+..+
T Consensus 434 ~~~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 434 TPSGIQATPMTYEVNGKQYV 453 (488)
T ss_pred CCCCceEcCEEEEeCCEEEE
Confidence 6554432 33555665333
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=1.2e-06 Score=88.24 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=117.4
Q ss_pred cceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEe
Q 010777 327 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 406 (501)
Q Consensus 327 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs 406 (501)
++.++|..|....+|++|+-+.++|+.|+..|.|++|++.+|........|...++-+.-+.+|+ ++|.+++
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs--------~~Ltsss 1163 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGS--------TQLTSSS 1163 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcc--------eeeeecc
Confidence 45567788889999999999999999999999999999999998888899999999998888876 3454544
Q ss_pred CCC-eEEEEeCCC-CeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEE-ecCC----CEEEEEEC
Q 010777 407 FDS-TVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNG----GIFEVCWN 479 (501)
Q Consensus 407 ~dg-~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~-~~~~----~i~~~~ws 479 (501)
+.. -..+|++.. +...+++.+ -.++.|+...++-+.|..-....+||+.++..+.++ .+.- .=+...||
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 444 578898763 444555543 367899988766666666667999999999877664 2211 12456789
Q ss_pred CCCCEEEEEECCCeEEEEEee
Q 010777 480 KEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 480 ~~g~~la~~~~d~~v~v~~~~ 500 (501)
|+.+.+ ..||. +||+|
T Consensus 1240 P~D~LI---lndGv--LWDvR 1255 (1516)
T KOG1832|consen 1240 PCDTLI---LNDGV--LWDVR 1255 (1516)
T ss_pred CCcceE---eeCce--eeeec
Confidence 987766 34553 67776
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00033 Score=71.26 Aligned_cols=188 Identities=12% Similarity=0.195 Sum_probs=117.3
Q ss_pred EEccCCccceeEEEECCCC-CEEEEEECCC-----cEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEE
Q 010777 147 TILEGHTSEVCACAWSPAG-SLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 220 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 220 (501)
+-+..|..+|-..-+.-++ .+|++-+.|+ .++||++..-..... |..+...+.+....+....++.+++.
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~V 133 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAV 133 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC----cceeeeeeeeccCCCCCCCcceEEEE
Confidence 3455666663333344444 6888888775 499999875432211 22232223222222234678999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECC-----CceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc-eeEeeeec
Q 010777 221 NGEGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFH 294 (501)
Q Consensus 221 s~~~~~l~sg~~dg~i~iw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~ 294 (501)
|.+-+.+|.|-.+|.|..+..+ +.........+.+|+++.+..++..++-+..-..|.+|.+.... ....+..+
T Consensus 134 s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~ 213 (933)
T KOG2114|consen 134 SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN 213 (933)
T ss_pred EccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC
Confidence 9999999999999999998532 11112233456799999999988774434445689999987544 23446666
Q ss_pred cCCeEEEecCCCce-EEEecCCCeEEEEEcCCCcceeeec-CCCCce
Q 010777 295 SGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-GHQGEV 339 (501)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v 339 (501)
+.+..+..+.+... |+.++ +..+++|+....++...|. ||...+
T Consensus 214 G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred CccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 77777777755444 55444 4567888877666665555 554433
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00062 Score=67.06 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=83.3
Q ss_pred EEEEcCCCCEEE-EEeCCCeE--EEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe--EEEEe
Q 010777 341 CVKWDPTGSLLA-SCSDDVTA--KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST--VKLWD 415 (501)
Q Consensus 341 ~v~~~~~~~~l~-s~s~Dg~i--~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~--i~iwd 415 (501)
..+|+|||+.|+ +...||.. .++|+.++... .+....+.-..-.|+|+|+ .++.+.+..|. |.+.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~--------~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGS--------KIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCC--------EEEEEeCCCCCcceEEEC
Confidence 467999998765 55567764 55566655532 2333333333446777775 46666666665 44555
Q ss_pred CCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCC-Cc--EEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEEC
Q 010777 416 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-KS--MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 490 (501)
Q Consensus 416 ~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~D-g~--i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~ 490 (501)
+..+.. ..+......-..-.|||||++|+..+.. |. |.+.++.++...+.+.........+|.|+|+.+...+.
T Consensus 313 ~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 313 LEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 554443 3333222222267899999999877643 44 77777766654555544444556778888877665543
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.12 E-value=0.0077 Score=57.34 Aligned_cols=271 Identities=15% Similarity=0.199 Sum_probs=123.6
Q ss_pred EECCCCCEEEEEeC-CC--eEEEEECCCceeEeecCCCC-CEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec
Q 010777 219 DWNGEGTLLATGSY-DG--QARIWSTNGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 294 (501)
Q Consensus 219 ~~s~~~~~l~sg~~-dg--~i~iw~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 294 (501)
+|.++|+.|+.++. +| ++.+-|+.......+..+.+ ...+..++|+++.++-....++|+--|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 57889976665544 55 45555677766666655442 2335667788888765556678999999998766655544
Q ss_pred cCCeEEEecC--CCc-eEEEe---c-------------------CCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCC
Q 010777 295 SGPTLDVDWR--NNV-SFATS---S-------------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 349 (501)
Q Consensus 295 ~~~~~~~~~~--~~~-~~~~~---~-------------------~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 349 (501)
..-+....|. .+. .++.. . -...|+..++.++..-..+. -...+.-+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 3322222221 111 11110 0 11234445555544333322 234566788898764
Q ss_pred -EEEEEeC---CC-eEEEEeCCCC-ceeeecccC--CCCEEEEEEcCCCCCCCCCCCcEEEEE---EeCCCeEEEEeCCC
Q 010777 350 -LLASCSD---DV-TAKIWNMKQD-KYVHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILAS---ASFDSTVKLWDVEL 418 (501)
Q Consensus 350 -~l~s~s~---Dg-~i~iwd~~~~-~~~~~~~~~--~~~v~~i~~~p~g~~~~~~~~~~~l~s---gs~dg~i~iwd~~~ 418 (501)
+|+-|.+ +. .-|||-+++. .....+..+ ...+.-=-|.|+|.. ++..+ ++.+..|.-+|+.+
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~-------i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST-------IWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS--------EEEEEEETTT--EEEEEE-TTT
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE-------EEEEeecCCCCceEEEeeCCCC
Confidence 4455543 22 2477755432 222222222 222333468888863 11112 22344566778887
Q ss_pred CeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC----------------cEEEEeCCCCeeEEEEecC---------CC-
Q 010777 419 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------------SMHIWSLKEGKIVKTYTGN---------GG- 472 (501)
Q Consensus 419 ~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg----------------~i~iw~~~~~~~~~~~~~~---------~~- 472 (501)
+....... ..+...+--++||+++|-=|.|. .|+++++..+.......+. ..
T Consensus 274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 75432221 12344566689999887544332 5677888877654332221 11
Q ss_pred -EEEEEECCCCCEEEEE-ECCCeEEEEEe
Q 010777 473 -IFEVCWNKEGDKIAAC-FANHTVCVLDF 499 (501)
Q Consensus 473 -i~~~~ws~~g~~la~~-~~d~~v~v~~~ 499 (501)
=..+.|+|||++++.. ...|...||=+
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 1468999999977755 45777777744
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.11 E-value=0.00053 Score=68.97 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=88.7
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC----C-ceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC
Q 010777 345 DPTGSLLASCSDDVTAKIWNMKQ----D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 419 (501)
Q Consensus 345 ~~~~~~l~s~s~Dg~i~iwd~~~----~-~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 419 (501)
.++|++... .+++|.+.|..+ + ..+..+ .-......+.++|+|. ++++++..+++|.|.|+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGk--------ylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGK--------YFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCC--------EEEEeCCCCCcEEEEEChhh
Confidence 457776655 367899999887 3 333333 3345567788888886 57788888999999999875
Q ss_pred eE------------EEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC----------CeeEEEEecCCCEEEEE
Q 010777 420 KL------------LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGGIFEVC 477 (501)
Q Consensus 420 ~~------------~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~----------~~~~~~~~~~~~i~~~~ 477 (501)
+. +.+..--.+| ...+|.++|....|--.|..|..|++.+ ..++..+.-+-.+-.+.
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~ 432 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH 432 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence 53 2333322233 4578999999888888999999999876 23444333222222222
Q ss_pred ------ECCCCCEEEEE
Q 010777 478 ------WNKEGDKIAAC 488 (501)
Q Consensus 478 ------ws~~g~~la~~ 488 (501)
-.|||++|++.
T Consensus 433 ~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 433 ASMGETKEADGKWLVSL 449 (635)
T ss_pred ecCCCcCCCCCCEEEEc
Confidence 37889988876
No 332
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.019 Score=58.67 Aligned_cols=76 Identities=17% Similarity=0.389 Sum_probs=50.5
Q ss_pred CeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEE--EEECCCCCEE
Q 010777 409 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDKI 485 (501)
Q Consensus 409 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~--~~ws~~g~~l 485 (501)
|.|.-+|+.+++.++..........+. ..-.+.+++.++.+|.++.+|.++|+.+..+...+.+.. +.+.-+|++.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 568889999999888765322111111 111445677788899999999999999988766554433 4444677633
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=2.7e-05 Score=76.10 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=61.2
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 428 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 428 h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
....|.+.+++|+...|+.|+.||+|.+||...+....+ ...-.+..++|||+|..+++|+..|.+.+||.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 567899999999999999999999999999987643322 33345789999999999999999999999996
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00021 Score=70.29 Aligned_cols=146 Identities=22% Similarity=0.251 Sum_probs=91.1
Q ss_pred CCceeEEEEcCCCCEEEEEe---CC-CeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeE
Q 010777 336 QGEVNCVKWDPTGSLLASCS---DD-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 411 (501)
Q Consensus 336 ~~~v~~v~~~~~~~~l~s~s---~D-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i 411 (501)
...+..-+|+|+++.++..+ .. ..+.++++.+++....+. ..+.-..-+|+|+|+ .++++...||..
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~--------~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS--------KLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC--------EEEEEECCCCCc
Confidence 44566788999998765442 22 358888988876543332 223334557888875 467777777764
Q ss_pred --EEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeC-CC--cEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEE
Q 010777 412 --KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIA 486 (501)
Q Consensus 412 --~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~-Dg--~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la 486 (501)
.+.|+..+. +..+..-.+.-+.=.|+|||++|+-.|. .| .|.+.+...+...+.....+.-....|||||++||
T Consensus 263 ~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 263 DIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred cEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEE
Confidence 555776655 3334433333335689999999986654 44 46666776655432222222233778999999999
Q ss_pred EEECC
Q 010777 487 ACFAN 491 (501)
Q Consensus 487 ~~~~d 491 (501)
..+..
T Consensus 342 ~~~~~ 346 (425)
T COG0823 342 FESSS 346 (425)
T ss_pred EEecc
Confidence 88753
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.0046 Score=61.27 Aligned_cols=213 Identities=15% Similarity=0.224 Sum_probs=115.2
Q ss_pred CCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeec
Q 010777 254 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 333 (501)
Q Consensus 254 ~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 333 (501)
.....+.++|+|++++.+ .||...|+........ . .+....+.|.....|++-.....|.++.--.+...+.+.
T Consensus 33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k--~---~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK--A---FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp S--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE--E---EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT----
T ss_pred cCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc--c---cCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEc
Confidence 345789999999998885 4788888874332211 1 223345667667778887777888886433332222222
Q ss_pred CCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEE
Q 010777 334 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 413 (501)
Q Consensus 334 ~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 413 (501)
.. ..+..+- + |.+|+..+.+ .|.+||+.+++.+..+... .|..+.|++++. +++-.+ +..+.|
T Consensus 107 ~~-~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~---------~val~t-~~~i~i 169 (443)
T PF04053_consen 107 LP-FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGE---------LVALVT-KDSIYI 169 (443)
T ss_dssp -S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSS---------EEEEE--S-SEEE
T ss_pred CC-cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCC---------EEEEEe-CCeEEE
Confidence 11 1233332 2 8888777665 8999999999999887643 389999999986 555555 446777
Q ss_pred EeCCCC--------------eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee--EEEEecCCCEEEEE
Q 010777 414 WDVELG--------------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYTGNGGIFEVC 477 (501)
Q Consensus 414 wd~~~~--------------~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~--~~~~~~~~~i~~~~ 477 (501)
++.... ..+.++ ...|.+.+|..+ -+|.|.. . .|+.+ -.|.. +.++ ...++=+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYtT~-~-~lkYl--~~Ge~~~i~~l--d~~~yllg 239 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYTTS-N-HLKYL--VNGETGIIAHL--DKPLYLLG 239 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-T-T-EEEEE--ETTEEEEEEE---SS--EEEE
T ss_pred EEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEEcC-C-eEEEE--EcCCcceEEEc--CCceEEEE
Confidence 765432 233332 356888888766 3444433 3 77773 34443 3333 34567777
Q ss_pred ECCCCCEEEEEECCCeEEEEEe
Q 010777 478 WNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 478 ws~~g~~la~~~~d~~v~v~~~ 499 (501)
..|..+.+.....++.|..+.+
T Consensus 240 y~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 240 YLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EETTTTEEEEE-TT--EEEEE-
T ss_pred EEccCCEEEEEECCCCEEEEEE
Confidence 7887788888888888877754
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.02 Score=56.58 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=103.3
Q ss_pred eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec----cCCeE-----EEecCC
Q 010777 235 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----SGPTL-----DVDWRN 305 (501)
Q Consensus 235 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~----~~~~~-----~~~~~~ 305 (501)
.|+||+..|.....+.--.+.+.++.|+.+ ..|+.-..||++++||+.... ++... ...+. ...+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence 599999998877765544489999999885 456677789999999986433 22211 11111 112222
Q ss_pred CceEEEecCCCeEEEEE-cCCCcceeee---cC-----CCC-ceeE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeec
Q 010777 306 NVSFATSSTDNMIYVCK-IGENRPIKTF---AG-----HQG-EVNC-VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 374 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~-~~~~~~~~~~---~~-----h~~-~v~~-v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 374 (501)
+..++. ..++.+++.. .......+.+ .+ |.. .... ..++.+....+....++.+.+.+...... +
T Consensus 138 ~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 138 NGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 333333 3344444432 2222111111 11 100 0111 23444555555555556666443222111 1
Q ss_pred ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCC-CCCeEEEEECCC
Q 010777 375 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPT 440 (501)
Q Consensus 375 ~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd 440 (501)
...+++..++.||++. ++|.-..+|.+.+....-.+.+.++... ......+.|.-+
T Consensus 214 -~~~~~i~~iavSpng~---------~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 214 -DSDGPIIKIAVSPNGK---------FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred -cCCCCeEEEEECCCCC---------EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 1246799999999987 6777788899999887666666655533 234456666544
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.94 E-value=0.0057 Score=57.11 Aligned_cols=252 Identities=14% Similarity=0.174 Sum_probs=137.1
Q ss_pred EEEECCCCCEEEEEeC----------CCeEEEEECCCcee-E--eecC-CCC----CEEEEEecCCCCEEEEE--ecCCe
Q 010777 217 TLDWNGEGTLLATGSY----------DGQARIWSTNGDLK-C--TLSK-HKG----PIFSLKWNKKGDYLLTG--SCDKT 276 (501)
Q Consensus 217 ~~~~s~~~~~l~sg~~----------dg~i~iw~~~~~~~-~--~~~~-h~~----~V~~l~~~~~~~~l~s~--s~D~~ 276 (501)
.+..+|+++.+++++. .-.|.+||...-.. . .+.. |.. ....++++.++++++.. +--.+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 4567899998887532 34788999765321 1 2222 111 12335778899887765 34567
Q ss_pred EEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCC-Ccceee----ecCCCC-ceeEEEEcCCCCE
Q 010777 277 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKT----FAGHQG-EVNCVKWDPTGSL 350 (501)
Q Consensus 277 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~----~~~h~~-~v~~v~~~~~~~~ 350 (501)
|.|-|+..++.+..+.... +.. +-...+..|.+-+.||.+....+.. ++..+. |..-.. .+..-++...+..
T Consensus 120 VtVVDl~~~kvv~ei~~PG-C~~-iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG-CWL-IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS-EEE-EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEEECCCCceeeeecCCC-EEE-EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 8999999888877665322 121 2223445788888999988888773 333221 111111 2233344445555
Q ss_pred EEEEeCCCeEEEEeCCCCcee--eecccCCCCEEEEEEcCCCCCC---CCCCCcEEE-EEEeCCC-------eEEEEeCC
Q 010777 351 LASCSDDVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGT---NNPNQQLIL-ASASFDS-------TVKLWDVE 417 (501)
Q Consensus 351 l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~p~g~~~---~~~~~~~~l-~sgs~dg-------~i~iwd~~ 417 (501)
++--+..|.|+--|+...... ..+......-..-.|.|.|-.. ..+.+.+++ .--+.+| .|-++|+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 555778888887776554321 1110000000001244443211 011222332 2222222 37777999
Q ss_pred CCeEEEEeeCCCCCeEEEEECCCCC-EEEEEe-CCCcEEEEeCCCCeeEEEEecCC
Q 010777 418 LGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTGNG 471 (501)
Q Consensus 418 ~~~~~~~~~~h~~~v~~l~~spdg~-~lasgs-~Dg~i~iw~~~~~~~~~~~~~~~ 471 (501)
+++.+..+.. ..++.+|+.+.+.+ +|.+.+ .++.|.+||..+|+++++...-+
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 9999988863 24688999998864 665544 58999999999999999887544
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.00038 Score=68.76 Aligned_cols=142 Identities=17% Similarity=0.270 Sum_probs=81.9
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 010777 335 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 414 (501)
Q Consensus 335 h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 414 (501)
..-....+.++|+|++++.+ .||...||.....+.. ..+....++|.+.+ -+|+-...+.|.|+
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n----------~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK-----AFGSGLSFVWSSRN----------RYAVLESSSTIKIY 94 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE-----EEEE-SEEEE-TSS----------EEEEE-TTS-EEEE
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc-----ccCceeEEEEecCc----------cEEEEECCCeEEEE
Confidence 34457789999999999885 5677777764332221 12344567888855 35666668889996
Q ss_pred eCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeE
Q 010777 415 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 494 (501)
Q Consensus 415 d~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v 494 (501)
.--.......++. ...+..|-. |.+|+..+.+ .|.+||+.+++++..+.... |..+.|+++|+++|..+.+ ++
T Consensus 95 kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i 167 (443)
T PF04053_consen 95 KNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SI 167 (443)
T ss_dssp ETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SE
T ss_pred EcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eE
Confidence 3222222112221 113444443 8888877655 89999999999999987653 7899999999999999866 57
Q ss_pred EEEEe
Q 010777 495 CVLDF 499 (501)
Q Consensus 495 ~v~~~ 499 (501)
.|++.
T Consensus 168 ~il~~ 172 (443)
T PF04053_consen 168 YILKY 172 (443)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
No 339
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.89 E-value=0.029 Score=54.73 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=58.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCC---------CCC-CCCcEEEEEEe
Q 010777 337 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG---------TNN-PNQQLILASAS 406 (501)
Q Consensus 337 ~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~---------~~~-~~~~~~l~sgs 406 (501)
..+.+++.+|++++.|+...=|.|.++|+.++..++-+++....-..-...+.... ... ....++++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45778999999999998888899999999988877766664332111110111100 000 11123455567
Q ss_pred CCCeEEEEeCCCCeEEEEee
Q 010777 407 FDSTVKLWDVELGKLLYSLN 426 (501)
Q Consensus 407 ~dg~i~iwd~~~~~~~~~~~ 426 (501)
.-|.|.||.+++|..+..+.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCCCCEEEEEE
Confidence 78999999999888776654
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.017 Score=57.06 Aligned_cols=198 Identities=12% Similarity=0.186 Sum_probs=93.9
Q ss_pred eEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCc------ceeeecCCCCceeEEEEcCCCC
Q 010777 276 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR------PIKTFAGHQGEVNCVKWDPTGS 349 (501)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------~~~~~~~h~~~v~~v~~~~~~~ 349 (501)
.|.||+. .|..+..+....+.+..+.|..+..++.-..||.++++++.... .+....-....+....+..+|-
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi 140 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI 140 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE
Confidence 3666664 33344444444578889999888888888999999999986433 0100000111122223333453
Q ss_pred EEEEEeCCCeEEEEeCCCCc-eeeecccCCCCEEEEEEcCCCCCC--CCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee
Q 010777 350 LLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGT--NNPNQQLILASASFDSTVKLWDVELGKLLYSLN 426 (501)
Q Consensus 350 ~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~p~g~~~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 426 (501)
.+.+ .++.+.+-.-.... ....+...........+.+..... ...... +.+....++.+.+.+-.... .+.
T Consensus 141 vvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~---~i~ 214 (410)
T PF04841_consen 141 VVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFK---QID 214 (410)
T ss_pred EEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccc---ccc
Confidence 3333 34444443322211 111111101100101111110000 000000 11222223334322221110 111
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC--CCEEEEEECCC
Q 010777 427 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKE 481 (501)
Q Consensus 427 ~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~--~~i~~~~ws~~ 481 (501)
..+++..++.||+|++||.-..+|.+.|.+..-.+.+..+... ..+..+.|=-+
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 2367999999999999999999999999886544444444332 33445555443
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.85 E-value=0.026 Score=52.80 Aligned_cols=227 Identities=16% Similarity=0.133 Sum_probs=122.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEee----------
Q 010777 222 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---------- 291 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~---------- 291 (501)
..++.|+.|..+| +.+++...........+..+|..+...|.-+.|++-+ |+++.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3567899998888 8888873222222222344599999998877776654 599999998754433211
Q ss_pred ---e-eccCCeEEEe---cCCCceEEEecCCCeEEEEEcCCC-----cceeeecCCCCceeEEEEcCCCCEEEEEeCCCe
Q 010777 292 ---E-FHSGPTLDVD---WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 359 (501)
Q Consensus 292 ---~-~~~~~~~~~~---~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~ 359 (501)
. .....+..+. .......+.......|.++..... +..+.+. -...+.+++|. ++.|+.|..+ .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-G 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-c
Confidence 0 0111122222 122333334444457777666542 3334433 23667888888 5567666654 4
Q ss_pred EEEEeCCCCceeeecccCC------------CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEE--Ee
Q 010777 360 AKIWNMKQDKYVHDLREHS------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SL 425 (501)
Q Consensus 360 i~iwd~~~~~~~~~~~~~~------------~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~ 425 (501)
..+.|+.++....-+.... .++..+.... + .+|++ .|..-.+.|. .|+... .+
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-e~Ll~--~~~~g~fv~~-~G~~~r~~~i 225 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD---------N-EFLLC--YDNIGVFVNK-NGEPSRKSTI 225 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC---------c-eEEEE--ecceEEEEcC-CCCcCcccEE
Confidence 7788888665432221111 1122222211 1 13332 2333333333 233222 22
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC
Q 010777 426 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 471 (501)
Q Consensus 426 ~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~ 471 (501)
.- .....++++. ..||+..+. +.|.||++.+|++++++....
T Consensus 226 ~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 226 QW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred Ec-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 21 2234556663 458877665 459999999999999987653
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.83 E-value=7.4e-06 Score=80.15 Aligned_cols=201 Identities=21% Similarity=0.297 Sum_probs=123.1
Q ss_pred CCCeEEEEECCCC--CEEEEEeCCCeEEEEECCCc---eeEeecCCCCCEEEEEecCCC-CEEEEEe----cCCeEEEEe
Q 010777 212 SKDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG-DYLLTGS----CDKTAIVWD 281 (501)
Q Consensus 212 ~~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~-~~l~s~s----~D~~i~iwd 281 (501)
.+.+.|++++-+. ..++.|..+|.|-+-..... -.....+|..+.++++|++-. +.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457788776543 47888999999998865432 123456788899999999854 4555542 356789999
Q ss_pred CCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEE
Q 010777 282 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 361 (501)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~ 361 (501)
+.++-. .|- ....|.+ +.....++++|-.+.+++.+|.....+.
T Consensus 136 i~s~lt--------vPk------e~~~fs~----------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 136 INSLLT--------VPK------ESPLFSS----------------------STLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccC--------CCc------ccccccc----------------------ccccCccccccccCcchhhcccccchhh
Confidence 876521 000 0001111 0112344788888999999999999999
Q ss_pred EEeCCCCce-eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEe-CCCCeEE-EEeeCCC----CCeEE
Q 010777 362 IWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD-VELGKLL-YSLNGHR----EPVYS 434 (501)
Q Consensus 362 iwd~~~~~~-~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd-~~~~~~~-~~~~~h~----~~v~~ 434 (501)
++|++.... ...+ ....+..+...|-.. .++++-+ ||.|.+|| .++-+.. ..+.... ..+..
T Consensus 180 ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~--------nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSV--NTKYVQGITVDPFSP--------NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFA 248 (783)
T ss_pred hhhhhhhhhhhhhh--hhhhcccceecCCCC--------Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence 999873321 1111 122334444445221 2666554 99999999 4443322 2222111 23889
Q ss_pred EEECCCCC-EEEEEeCC-CcEEEEeCC
Q 010777 435 LAFSPTGE-YLASGSLD-KSMHIWSLK 459 (501)
Q Consensus 435 l~~spdg~-~lasgs~D-g~i~iw~~~ 459 (501)
++|.|... .|++.+.| ++|+.+++.
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEeccc
Confidence 99999753 45565554 789999875
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.80 E-value=0.00011 Score=71.85 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=62.8
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc
Q 010777 211 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 211 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~ 286 (501)
....|.|++++|+...|+.|..||.|.+||........ ....-..+.++|||+|..|++|+..|.+.+||+.-..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 45679999999999999999999999999987654432 2344556889999999999999999999999975443
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.79 E-value=5.3e-05 Score=46.19 Aligned_cols=36 Identities=44% Similarity=0.793 Sum_probs=32.8
Q ss_pred eEEccCCccceeEEEECCCCCEEEEEECCCcEEEEe
Q 010777 146 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 181 (501)
Q Consensus 146 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd 181 (501)
+..+..|...|++++|+|.+.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778999999999999999999999999999996
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.00064 Score=67.82 Aligned_cols=119 Identities=16% Similarity=0.215 Sum_probs=86.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeec--CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEee
Q 010777 214 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 291 (501)
Q Consensus 214 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 291 (501)
.|.--++...+.+++.|+.-|.+++|+..+.....+. +-.+.+..+..+++..+++.|+..|.|.++-++.+....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-- 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-- 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc--
Confidence 3555567778899999999999999998765544333 345566777788888888889989999988765422100
Q ss_pred eeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010777 292 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~ 367 (501)
..+++. .| ..|...|+|++|++++..|.+|..-|+|.+-.+..
T Consensus 113 ---------------~~~~t~-~d-----------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 ---------------LDYVTP-CD-----------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ---------------ceeecc-cc-----------------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 000000 00 12778899999999999999999999998887766
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.054 Score=53.18 Aligned_cols=232 Identities=16% Similarity=0.150 Sum_probs=143.3
Q ss_pred EEEEecCCCCEEEEEe-cCCeEEEEeCCCcceeEeeeec-cCC-eEEEecCCCceEEEecCCCeEEEEEcCCCcceeeec
Q 010777 257 FSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFH-SGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 333 (501)
Q Consensus 257 ~~l~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 333 (501)
..+...+++..++... ....+...+............. ..+ -..+.......++....++.|.+.+......+....
T Consensus 34 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~ 113 (381)
T COG3391 34 GGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP 113 (381)
T ss_pred ceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee
Confidence 4566777775443332 2224555554422111111111 111 122333445567777778888888866555443332
Q ss_pred CCCCceeEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe
Q 010777 334 GHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 410 (501)
Q Consensus 334 ~h~~~v~~v~~~~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~ 410 (501)
- ......++++|+++.+..+.. ++++.+.|..+.+.......-..+ ..++++|+|. .+.++-..++.
T Consensus 114 v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~--------~vyv~~~~~~~ 183 (381)
T COG3391 114 V-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGN--------KVYVTNSDDNT 183 (381)
T ss_pred e-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCC--------eEEEEecCCCe
Confidence 1 115567999999976655444 688999998888887764433334 7888889885 24455567899
Q ss_pred EEEEeCCCCeEEE-E----eeCCCCCeEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeeEEE-EecCC-CEEEEEECC
Q 010777 411 VKLWDVELGKLLY-S----LNGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKEGKIVKT-YTGNG-GIFEVCWNK 480 (501)
Q Consensus 411 i~iwd~~~~~~~~-~----~~~h~~~v~~l~~spdg~~lasgs~---Dg~i~iw~~~~~~~~~~-~~~~~-~i~~~~ws~ 480 (501)
|.+.|........ . +.-+ ..-..++++|+|.++...-. ++.+...|..++.+... +.... ....+..+|
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred EEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 9999977655542 1 1112 22367899999986654433 36999999999887665 33333 567889999
Q ss_pred CCCEEEEE-ECCCeEEEEEe
Q 010777 481 EGDKIAAC-FANHTVCVLDF 499 (501)
Q Consensus 481 ~g~~la~~-~~d~~v~v~~~ 499 (501)
+|+.+... +..+.|.+.|.
T Consensus 263 ~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred CCCEEEEEecCCCeEEEEeC
Confidence 99988777 44477777764
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00018 Score=70.82 Aligned_cols=93 Identities=20% Similarity=0.408 Sum_probs=77.7
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeE-EEEECCCCCEEEEEeCCCcEEEE
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAFSPTGEYLASGSLDKSMHIW 456 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~spdg~~lasgs~Dg~i~iw 456 (501)
...+..+.|+|.-. ++|.+..+|.|-+..+. .+.++++.-|...++ +++|.|||++||.|=.||+|++.
T Consensus 20 ~~~i~~~ewnP~~d---------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD---------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccc---------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 45677888988764 78999999999999887 778888887777777 99999999999999999999999
Q ss_pred eCCCCeeEEE--EecCCCEEEEEECC
Q 010777 457 SLKEGKIVKT--YTGNGGIFEVCWNK 480 (501)
Q Consensus 457 ~~~~~~~~~~--~~~~~~i~~~~ws~ 480 (501)
|+.+|..+.. +.....|..+-|.|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999988776 44455677777763
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00012 Score=44.47 Aligned_cols=38 Identities=53% Similarity=0.928 Sum_probs=33.9
Q ss_pred eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 420 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 420 ~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
+++..+..|...|+++.|+|.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778889999999999999999999999999996
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.73 E-value=0.027 Score=54.74 Aligned_cols=285 Identities=18% Similarity=0.252 Sum_probs=132.7
Q ss_pred cCCCceEEccCCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeecc-ccccC-CCCeEEE
Q 010777 141 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEK-SKDVTTL 218 (501)
Q Consensus 141 ~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~V~~~ 218 (501)
+....+..+......+....|||+|+.||-.. ++.|.++++.++....-...+...+. ..... .+.+. -..-..+
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~--nG~~dwvyeEEv~~~~~~~ 106 (353)
T PF00930_consen 30 IETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY--NGVPDWVYEEEVFDRRSAV 106 (353)
T ss_dssp TTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE--ESB--HHHHHHTSSSSBSE
T ss_pred cCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE--cCccceeccccccccccce
Confidence 33333344443356788999999999988775 57899998765522110011100000 00000 00000 1223568
Q ss_pred EECCCCCEEEEEeCC-CeEEEEECCCceeEeecCCCC---CEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEee-e-
Q 010777 219 DWNGEGTLLATGSYD-GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-E- 292 (501)
Q Consensus 219 ~~s~~~~~l~sg~~d-g~i~iw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-~- 292 (501)
.|||||++|+....| ..|+.+... ....... .+..+.+-.-|.-.. .-.+.++|+.+++....- .
T Consensus 107 ~WSpd~~~la~~~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 107 WWSPDSKYLAFLRFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp EE-TTSSEEEEEEEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---H
T ss_pred EECCCCCEEEEEEECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeecc
Confidence 899999999876554 333333210 0111111 234444422222111 113556777776643211 1
Q ss_pred ---eccCCeEEEecCCCce-EEEe--cCC---CeEEEEEcCCCcceeeecC-CCC---ceeEEEEc-CCCC-EEEEEeCC
Q 010777 293 ---FHSGPTLDVDWRNNVS-FATS--STD---NMIYVCKIGENRPIKTFAG-HQG---EVNCVKWD-PTGS-LLASCSDD 357 (501)
Q Consensus 293 ---~~~~~~~~~~~~~~~~-~~~~--~~d---~~i~~~~~~~~~~~~~~~~-h~~---~v~~v~~~-~~~~-~l~s~s~D 357 (501)
....-+..+.|.++.. ++.. ..+ ..+.+++..++.....+.. ..+ ......|. +++. +|.....|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 1112245566754433 3332 221 2455667655443222221 112 22355554 5554 45555577
Q ss_pred CeEEE--EeCCCCceeeecccCCCCEEE-EEEcCCCCCCCCCCCcEEEEEEeCC----CeEEEEeCCCCeEEEEeeCCCC
Q 010777 358 VTAKI--WNMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYSLNGHRE 430 (501)
Q Consensus 358 g~i~i--wd~~~~~~~~~~~~~~~~v~~-i~~~p~g~~~~~~~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~h~~ 430 (501)
|.-+| ++...+. ...+....-.|.. +.|++.+. .+..++..+ ..|..-++..+..+..+.....
T Consensus 258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~--------~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~ 328 (353)
T PF00930_consen 258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNN--------RIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG 328 (353)
T ss_dssp SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSS--------EEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS
T ss_pred CCcEEEEEcccccc-eeccccCceeecccceEcCCCC--------EEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC
Confidence 75554 4555544 3344444455644 56776653 344555542 2455556662344556665444
Q ss_pred CeEEEEECCCCCEEEE
Q 010777 431 PVYSLAFSPTGEYLAS 446 (501)
Q Consensus 431 ~v~~l~~spdg~~las 446 (501)
....+.|||+|++++-
T Consensus 329 ~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 329 DHYSASFSPDGKYYVD 344 (353)
T ss_dssp TTEEEEE-TTSSEEEE
T ss_pred CceEEEECCCCCEEEE
Confidence 4469999999998864
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.71 E-value=0.036 Score=52.12 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=89.7
Q ss_pred CceeEEEEcCCCCEEEEEeC-----C----CeEEEEeCC-CCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEe
Q 010777 337 GEVNCVKWDPTGSLLASCSD-----D----VTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 406 (501)
Q Consensus 337 ~~v~~v~~~~~~~~l~s~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs 406 (501)
...+.+...|+|.+.++... . ..-.+|-+. .+..+..+..+-..-+.|+|||+++ .+.++=+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~--------tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK--------TLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC--------EEEEEeC
Confidence 35677888999987765544 0 112455554 3444444444344557799999986 2445555
Q ss_pred CCCeEEEEeCCC--C----eE-EEEeeCCCCCeEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeeEEEEecC-CCEEEEE
Q 010777 407 FDSTVKLWDVEL--G----KL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK-SMHIWSLKEGKIVKTYTGN-GGIFEVC 477 (501)
Q Consensus 407 ~dg~i~iwd~~~--~----~~-~~~~~~h~~~v~~l~~spdg~~lasgs~Dg-~i~iw~~~~~~~~~~~~~~-~~i~~~~ 477 (501)
..+.|.-|++.. + +. ...+....+..-.++...+|.+-+++-.+| .|.+|+.. |+++..+... ..+.+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 567777776652 1 11 122222334455677777888776555554 89999988 8888887765 5678888
Q ss_pred EC-CCCCEEEEEECC
Q 010777 478 WN-KEGDKIAACFAN 491 (501)
Q Consensus 478 ws-~~g~~la~~~~d 491 (501)
|- |+.+.|...+..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 84 456655554443
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00026 Score=71.78 Aligned_cols=144 Identities=17% Similarity=0.267 Sum_probs=91.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 339 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 339 v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
+++++|+|..-.|+.|=.-|.+.+|...+.+.......|..+|..+.|||+|. .|+++..-|.|.+|.+..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~---------~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT---------VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC---------eEEEcCCCceeEEEEeee
Confidence 45799999988899999999999999877766555667899999999999997 789999999999998763
Q ss_pred CeEEEE--eeCCC--CC--eEEEEECCCCC------EEEEEeCCCcEE-EEeCCCCeeEEEEecCCCEEEEEECCCCCEE
Q 010777 419 GKLLYS--LNGHR--EP--VYSLAFSPTGE------YLASGSLDKSMH-IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI 485 (501)
Q Consensus 419 ~~~~~~--~~~h~--~~--v~~l~~spdg~------~lasgs~Dg~i~-iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~l 485 (501)
...+.. +-.|. .. ..+...++++. ..+..+.+.-+- .++.+.....+..... + .|+|..+
T Consensus 133 ~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ks-g------v~~g~~F 205 (1416)
T KOG3617|consen 133 IGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKS-G------VPKGTEF 205 (1416)
T ss_pred ccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccccc-C------CCCCcEE
Confidence 222211 11121 12 23445566642 223344443333 4443321111111111 1 3677777
Q ss_pred EEEECCCeEEEEE
Q 010777 486 AACFANHTVCVLD 498 (501)
Q Consensus 486 a~~~~d~~v~v~~ 498 (501)
.++..+|+|+..|
T Consensus 206 ~~~~~~GtVyyvd 218 (1416)
T KOG3617|consen 206 LFAGKSGTVYYVD 218 (1416)
T ss_pred EEEcCCceEEEEc
Confidence 7777777776655
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.69 E-value=0.018 Score=56.30 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=135.2
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC---cc----
Q 010777 214 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EE---- 286 (501)
Q Consensus 214 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~---~~---- 286 (501)
.|+.+.|+++..-|+.|...|.|-||......... ..-..+-....+.+- ...++.-.+-|+.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc------cccCCCcceEEehhhCCcccccc
Confidence 48899999999999999999999998653211100 000001111111110 00111122223221 11
Q ss_pred --eeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeee--cC------CCCceeEEEEcC-----CC---
Q 010777 287 --WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF--AG------HQGEVNCVKWDP-----TG--- 348 (501)
Q Consensus 287 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~------h~~~v~~v~~~~-----~~--- 348 (501)
....+....+++.++...+-..++.+..+|.+.++|++.+..+..- .. ....++++.|.. |+
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred cCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 1122334467888888877777888999999999999887765431 11 224577888762 33
Q ss_pred CEEEEEeCCCeEEEEeCCC---Ccee----eecccCCCCEEEEE-EcCC-CCCCC------------CCCCcEEEEEEeC
Q 010777 349 SLLASCSDDVTAKIWNMKQ---DKYV----HDLREHSKEIYTIR-WSPT-GSGTN------------NPNQQLILASASF 407 (501)
Q Consensus 349 ~~l~s~s~Dg~i~iwd~~~---~~~~----~~~~~~~~~v~~i~-~~p~-g~~~~------------~~~~~~~l~sgs~ 407 (501)
-.+++|+..|.+.+|.+.- +.+. .....+..++..|. ++.+ |.... ...+. +++.+ .
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g-~vVvv-S 233 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG-YVVVV-S 233 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E-EEEEE--
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc-EEEEE-c
Confidence 4688999999999997641 2222 11223456666554 3222 21110 01112 33333 3
Q ss_pred CCeEEEEeCCCCeEEEEeeCCCCCeEEEEE-----CCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCC-----CEEEEE
Q 010777 408 DSTVKLWDVELGKLLYSLNGHREPVYSLAF-----SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-----GIFEVC 477 (501)
Q Consensus 408 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~-----~i~~~~ 477 (501)
+..+|++...+.+..+......-....+.+ ...+..|++-..+|.|++|.+..-+.+....-.. .+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 678999999887776654422222334445 2356788888999999999999877766654422 134567
Q ss_pred ECCCCCEEEEEECC
Q 010777 478 WNKEGDKIAACFAN 491 (501)
Q Consensus 478 ws~~g~~la~~~~d 491 (501)
++++|..++-.+..
T Consensus 314 is~~Gdi~~~~gps 327 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS 327 (395)
T ss_dssp E-TTS-EEEE-SSS
T ss_pred ECCCCCEEEEeCcc
Confidence 79999877766544
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00019 Score=70.60 Aligned_cols=70 Identities=17% Similarity=0.349 Sum_probs=60.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-cCCCEE-EEEECCCCCEEEEEECCCeEEEEEee
Q 010777 430 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIF-EVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 430 ~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~-~~~~i~-~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
..|..+.|+|.-.+||.+..+|.|.+..+. .+.+.+++ ++..+. ++||.|||+.||.|..||+|.+.|+-
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 347789999999999999999999999988 77788887 444455 99999999999999999999999873
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=0.038 Score=48.96 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=106.2
Q ss_pred CEEEEEecCCeEEEEeCCCcceeEeee----eccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeE
Q 010777 266 DYLLTGSCDKTAIVWDVKTEEWKQQFE----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNC 341 (501)
Q Consensus 266 ~~l~s~s~D~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~ 341 (501)
.+++.||..+.+..-|..++...-.-. ....++. -+..++.+...+.+++.+..++..+..|..-..--..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 467778888888888888776443211 1111221 1233677888899999999888777666533322234
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC--
Q 010777 342 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-- 419 (501)
Q Consensus 342 v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-- 419 (501)
....+++.++..|+.|++....|.++..++...+-..+...+-+..|. .+.++ .+...|.|.--....+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-------~~sly--~a~t~G~vlavt~~~~~~ 169 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-------DGSLY--AAITAGAVLAVTKNPYSS 169 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCC-------CceEE--EEeccceEEEEccCCCCc
Confidence 556789999999999999999999998888765433322222222231 11122 2333343333222222
Q ss_pred eEEEEeeCCCCCeEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCE
Q 010777 420 KLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 473 (501)
Q Consensus 420 ~~~~~~~~h~~~v~~l~~sp--dg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i 473 (501)
..++... ..+||.+ +| -++++..+.-||.+.-++ ..|+.+..+...++|
T Consensus 170 ~~~w~~~-~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpI 220 (354)
T KOG4649|consen 170 TEFWAAT-RFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPI 220 (354)
T ss_pred ceehhhh-cCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCce
Confidence 1111110 1123221 11 134556666777777777 566666666555554
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.60 E-value=0.065 Score=50.25 Aligned_cols=252 Identities=14% Similarity=0.141 Sum_probs=138.8
Q ss_pred eEEEEECCCce-eEeecCCCCCEEEEEecCCCCEEEEEe----------cCCeEEEEeCCCcceeEeeeeccC-CeEEEe
Q 010777 235 QARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQFEFHSG-PTLDVD 302 (501)
Q Consensus 235 ~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~ 302 (501)
.+.|.|.+... +-.+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-.....+..... ....+
T Consensus 18 rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~- 94 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV- 94 (342)
T ss_dssp EEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec-
Confidence 57777765432 222221 1112355689999887653 233588999998877766655443 11111
Q ss_pred cCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCcee-------EEEEcCCC-CEEEEEeCCCeEEEEeCC-CCceeee
Q 010777 303 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------CVKWDPTG-SLLASCSDDVTAKIWNMK-QDKYVHD 373 (501)
Q Consensus 303 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~-------~v~~~~~~-~~l~s~s~Dg~i~iwd~~-~~~~~~~ 373 (501)
.....+..+.+++.++++++.....+....-....+. |.-.-|.+ .-|.+-+.||++.-..+. .++....
T Consensus 95 -~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 95 -PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp ---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred -ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 2233456666777777777765544444333222211 33333433 457788889998888776 3443311
Q ss_pred cccCCCCEEEEEEcCCCCCCC-CC-----CCcEEEEEEeCCCeEEEEeCCCCeEEE--EeeCC----------CCCeEEE
Q 010777 374 LREHSKEIYTIRWSPTGSGTN-NP-----NQQLILASASFDSTVKLWDVELGKLLY--SLNGH----------REPVYSL 435 (501)
Q Consensus 374 ~~~~~~~v~~i~~~p~g~~~~-~~-----~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~h----------~~~v~~l 435 (501)
. +-.|.++....+ ++ ...+++ -+..|.|+--|+....... .+.-. .+.-.-+
T Consensus 174 ~--------t~~F~~~~dp~f~~~~~~~~~~~~~F--~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~ 243 (342)
T PF06433_consen 174 S--------TKVFDPDDDPLFEHPAYSRDGGRLYF--VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI 243 (342)
T ss_dssp E--------EEESSTTTS-B-S--EEETTTTEEEE--EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E
T ss_pred e--------ccccCCCCcccccccceECCCCeEEE--EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee
Confidence 1 112333321111 11 112222 5678888888876554322 22110 0122347
Q ss_pred EECCCCCEEEEE---eCCC-------cEEEEeCCCCeeEEEEecCCCEEEEEECCCCC-EEEEE-ECCCeEEEEEee
Q 010777 436 AFSPTGEYLASG---SLDK-------SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAAC-FANHTVCVLDFR 500 (501)
Q Consensus 436 ~~spdg~~lasg---s~Dg-------~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~-~la~~-~~d~~v~v~~~~ 500 (501)
++++..+.|... +.++ .|.+||+.+++.+..++....+.+++.+.+.+ +|.+. ..++.|.|||..
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 888765544432 2222 58999999999999988766788999999987 55444 457899999964
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.57 E-value=0.051 Score=48.22 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=46.8
Q ss_pred CCEEEEEeCCCeEEEEECCCc-eeEeecCCCCCE-EEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeee
Q 010777 224 GTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 292 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 292 (501)
|.+++.|.+.|.+++-+.... +...+..- +.| ......+++..+..|+.|++....|+++..++-...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 567999999999998886643 33322211 111 122346788899999999999999999877665443
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.56 E-value=0.033 Score=53.40 Aligned_cols=208 Identities=14% Similarity=0.146 Sum_probs=117.2
Q ss_pred eEEEEeCCCcceeEeeeeccCC-eE---EEecCC-----CceEEEecC---------C-CeEEEEEcCCC----cceeee
Q 010777 276 TAIVWDVKTEEWKQQFEFHSGP-TL---DVDWRN-----NVSFATSST---------D-NMIYVCKIGEN----RPIKTF 332 (501)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~-~~---~~~~~~-----~~~~~~~~~---------d-~~i~~~~~~~~----~~~~~~ 332 (501)
.|++.|..+.+.+..+...... +. .+.+.. ...++.|.. . |.|+++.+... ..+...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5777777777666666554432 22 223332 334443321 2 88999998874 222222
Q ss_pred --cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeeec-ccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC
Q 010777 333 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 408 (501)
Q Consensus 333 --~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~-~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d 408 (501)
....++|.+++-- .+. |+.+. .+.|.+|++...+ ....- ......+.++....+ +++.|..-
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-----------~I~vgD~~ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-----------YILVGDAM 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-----------EEEEEESS
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-----------EEEEEEcc
Confidence 1346788888766 444 44343 3789999988776 33221 112235566654322 67788877
Q ss_pred CeEEEEeCCC-CeEEEEe--eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCC-------C--eeE--EEEecCCCEE
Q 010777 409 STVKLWDVEL-GKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-------G--KIV--KTYTGNGGIF 474 (501)
Q Consensus 409 g~i~iwd~~~-~~~~~~~--~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~-------~--~~~--~~~~~~~~i~ 474 (501)
..|.++.+.. ...+..+ ......++++.|-+++..++.+..+|.|.++.... + ++. ..+.....|+
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 7788775432 2322222 22345688999987777899999999999998762 2 232 3333344577
Q ss_pred EE---EECC--CCC------EEEEEECCCeEEEE
Q 010777 475 EV---CWNK--EGD------KIAACFANHTVCVL 497 (501)
Q Consensus 475 ~~---~ws~--~g~------~la~~~~d~~v~v~ 497 (501)
++ +..| .+. .++.++.+|.|.++
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 76 5556 222 48888999998743
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.54 E-value=0.024 Score=55.43 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=116.9
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCC-CCCC--------------CCceEEEEEe---------e--cccc
Q 010777 155 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-GAQN--------------GPLNVLVLKH---------V--KGRT 208 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~-~~~~--------------~~~~~~~~~~---------~--~~~~ 208 (501)
.|+.+.|.++..-|+.|-..|.|.||.+....... .... ++-.+..+.. + ..-.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999999876543322 0000 0000101100 0 0001
Q ss_pred ccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeE---eecC------CCCCEEEEEecC-----CC---CEEEEE
Q 010777 209 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC---TLSK------HKGPIFSLKWNK-----KG---DYLLTG 271 (501)
Q Consensus 209 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~---~~~~------h~~~V~~l~~~~-----~~---~~l~s~ 271 (501)
....++|++++.| +=-+++.|+.+|.+.|.|..+.... .+.. ....|+++.|.- ++ -.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1235789999997 5559999999999999999775332 1222 234578888862 22 468899
Q ss_pred ecCCeEEEEeCC---CcceeEeee----eccCCeEEEecC---CC-------------------ceEEEecCCCeEEEEE
Q 010777 272 SCDKTAIVWDVK---TEEWKQQFE----FHSGPTLDVDWR---NN-------------------VSFATSSTDNMIYVCK 322 (501)
Q Consensus 272 s~D~~i~iwd~~---~~~~~~~~~----~~~~~~~~~~~~---~~-------------------~~~~~~~~d~~i~~~~ 322 (501)
...|.+.+|.+. .+.+...+. .+.+++..+... .. ..++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999764 133333322 233444443321 00 1245555567788887
Q ss_pred cCCCcceeeecCCCCceeEEEE-----cCCCCEEEEEeCCCeEEEEeCCCCceeeecc
Q 010777 323 IGENRPIKTFAGHQGEVNCVKW-----DPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 375 (501)
Q Consensus 323 ~~~~~~~~~~~~h~~~v~~v~~-----~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 375 (501)
....+.........-....+.+ ...+..|++-..+|.|++|.+-.-+.+..+.
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 7665544333222112233344 2356678888999999999988766665543
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.52 E-value=0.0051 Score=63.36 Aligned_cols=156 Identities=12% Similarity=0.121 Sum_probs=85.0
Q ss_pred CCceeEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCC--CCcEEEEE-
Q 010777 336 QGEVNCVKWDPTGSLLASCS------DDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP--NQQLILAS- 404 (501)
Q Consensus 336 ~~~v~~v~~~~~~~~l~s~s------~Dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~--~~~~~l~s- 404 (501)
...+..++++|+|+.+|... .|+ .|.+++... .. ..+.. ......-.|+|+|.....- ......++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 34678899999999887665 244 444445422 22 22221 2236777899997521000 00011111
Q ss_pred EeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEE---EeCCCCee-E---EEE-ecCCC-EEE
Q 010777 405 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGKI-V---KTY-TGNGG-IFE 475 (501)
Q Consensus 405 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~i---w~~~~~~~-~---~~~-~~~~~-i~~ 475 (501)
....+.+.+.++..+.... .....|..+.|||||..||... ++.|.+ -....|.. + ..+ ...+. +.+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 1123344444554443322 2345799999999999888765 477777 44344541 1 112 22233 588
Q ss_pred EEECCCCCEEEEEECCCeEEEEEe
Q 010777 476 VCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 476 ~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
+.|..++..+ .+..++...||-+
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEE
Confidence 9999999855 4444454455544
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.52 E-value=0.017 Score=44.51 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=65.3
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEEE-
Q 010777 400 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW- 478 (501)
Q Consensus 400 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~w- 478 (501)
.-|+.||.|..||+|+-. ..+.++... ..|++++-... ..++.|-.+|+|-+|+-. ..+.....+..++++++
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEE
Confidence 368889999999999754 677777754 56788877666 568888999999999753 33444445555666554
Q ss_pred --CCCC-CEEEEEECCCeEEE
Q 010777 479 --NKEG-DKIAACFANHTVCV 496 (501)
Q Consensus 479 --s~~g-~~la~~~~d~~v~v 496 (501)
+.|| ..|++|-.+|.|-+
T Consensus 90 D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCCCceEEEEEecCCeEEe
Confidence 3344 48999999998753
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.51 E-value=0.0044 Score=64.87 Aligned_cols=144 Identities=18% Similarity=0.236 Sum_probs=93.7
Q ss_pred CEEEEE-eCCCeEEEEeCCCCceeeecccCCCC-EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEe
Q 010777 349 SLLASC-SDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSL 425 (501)
Q Consensus 349 ~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~ 425 (501)
++|+.. .....|+-.|+..|+.+.....+... |..+ .|+.........+.+ .|-.++.|..||.|... .+..-
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tf--lGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTF--LGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceE--EEECCCceEEeccCCCCCceeec
Confidence 444333 45678888999999999998877643 4444 455443222223333 46678889999998532 22111
Q ss_pred eC----CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEE-EEec-CCCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 426 NG----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-TYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 426 ~~----h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~-~~~~-~~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.. .....+|++-+.+| +||.||.+|.|++||. .|+.-+ .+++ ..+|.+|+.+.||++|++.+.. .|.+++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 11 23456778777766 6899999999999994 343333 3444 4469999999999988776644 5655553
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.50 E-value=3.3e-05 Score=75.72 Aligned_cols=182 Identities=15% Similarity=0.264 Sum_probs=112.4
Q ss_pred ceEEEecCCCeEEEEEcCCCcc--eeeecCCCCceeEEEEcCC-CCEEEEEe----CCCeEEEEeCCCCc--eee--ecc
Q 010777 307 VSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPT-GSLLASCS----DDVTAKIWNMKQDK--YVH--DLR 375 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~-~~~l~s~s----~Dg~i~iwd~~~~~--~~~--~~~ 375 (501)
..++.|..+|.|-+...+...- -....+|...+++++|++- .+.||.|- .|..+.|||+.++- +.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 3456677778888877665322 2234567788999999985 45666663 35679999987762 111 111
Q ss_pred c-CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECC-CCCEEEEEeCCCc
Q 010777 376 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKS 452 (501)
Q Consensus 376 ~-~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp-dg~~lasgs~Dg~ 452 (501)
. ......+++|-.+.. ++.+|.....+.++|++.. .....+. +..+..+..+| .+.|+++-. ||.
T Consensus 151 ~~~l~gqns~cwlrd~k---------lvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs~~-dg~ 218 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTK---------LVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCSNS-DGD 218 (783)
T ss_pred cccccCccccccccCcc---------hhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceeccc-cCc
Confidence 1 222334566654332 6778888889999998832 1111221 23455677778 677888766 999
Q ss_pred EEEEeC-CCCe-eEEEEec-----CCCEEEEEECCCCC-EEEEEEC-CCeEEEEEee
Q 010777 453 MHIWSL-KEGK-IVKTYTG-----NGGIFEVCWNKEGD-KIAACFA-NHTVCVLDFR 500 (501)
Q Consensus 453 i~iw~~-~~~~-~~~~~~~-----~~~i~~~~ws~~g~-~la~~~~-d~~v~v~~~~ 500 (501)
|.+||. ++-+ .+.++.. ...+..++|.|--. .+|++.. .++|+.|+++
T Consensus 219 iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 219 IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999993 3322 2222222 12489999999654 5555544 5678888875
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0032 Score=61.05 Aligned_cols=140 Identities=11% Similarity=0.217 Sum_probs=93.4
Q ss_pred CceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCE-------EEEEeCCCeEEEEeCCCCce--eeeccc
Q 010777 306 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-------LASCSDDVTAKIWNMKQDKY--VHDLRE 376 (501)
Q Consensus 306 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-------l~s~s~Dg~i~iwd~~~~~~--~~~~~~ 376 (501)
+..+.++.....++-.|+..++.+..+.-|.. |+-+.+.|+.+. -+.|-.|..|.-||.+-... +.....
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34455666667888889999998888887766 777888887542 23466677888899873322 111111
Q ss_pred CC----CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeE-EEEeeCCCCCeEEEEECCCCCEEEEEeCCC
Q 010777 377 HS----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK 451 (501)
Q Consensus 377 ~~----~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spdg~~lasgs~Dg 451 (501)
|+ ....|++-..+| +++.||.+|.||+||- .+.. ...+.+...+|..|..+.+|++|+..+ +.
T Consensus 425 kqy~~k~nFsc~aTT~sG----------~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~t 492 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG----------YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KT 492 (644)
T ss_pred cccccccccceeeecCCc----------eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-cc
Confidence 11 112333333333 6899999999999997 3433 345778889999999999999987655 44
Q ss_pred cEEEEeC
Q 010777 452 SMHIWSL 458 (501)
Q Consensus 452 ~i~iw~~ 458 (501)
++.+-++
T Consensus 493 yLlLi~t 499 (644)
T KOG2395|consen 493 YLLLIDT 499 (644)
T ss_pred EEEEEEE
Confidence 5555554
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.48 E-value=0.0034 Score=65.71 Aligned_cols=137 Identities=12% Similarity=0.175 Sum_probs=94.0
Q ss_pred EecCCCeEEEEEcCCCcceeeecCCCCc-eeEEEEcC-----CCCEEEEEeCCCeEEEEeCCCCc--eeee-cc--cCCC
Q 010777 311 TSSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDP-----TGSLLASCSDDVTAKIWNMKQDK--YVHD-LR--EHSK 379 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~-v~~v~~~~-----~~~~l~s~s~Dg~i~iwd~~~~~--~~~~-~~--~~~~ 379 (501)
.....+.|+-.|+..++.+..+..|... |..++-.. +....+.|-.+..+..||.+-.. ++.. .. ....
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3345688999999999999999877643 54443211 12345677788899999987532 2311 11 1223
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
...|++-+.+| .||.||.+|.||+||--..+....+.+...||..|..+.||+||++.+ +..|.+++.
T Consensus 579 ~Fs~~aTt~~G----------~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG----------YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc----------eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 45666666666 689999999999999433233344667789999999999999988765 456666664
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.45 E-value=0.14 Score=52.39 Aligned_cols=229 Identities=14% Similarity=0.114 Sum_probs=124.1
Q ss_pred CEEEEEecCCeEEEEeCCCcceeEeeeeccC----CeEE-EecCCCceEEEec-----CCCeEEEEEcCCCcceeeecC-
Q 010777 266 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----PTLD-VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAG- 334 (501)
Q Consensus 266 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~- 334 (501)
..++.++.|+.+...|..+++.+-.+..... .+.+ -...++..++..+ .++.|+.++..+++.+-.+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 4677888899999999999987655432110 0000 0011233333322 257888888777665432211
Q ss_pred -----------------------------C-CCce-eEEEEcCCCCEEEEEeCC-----C-----------eEEEEeCCC
Q 010777 335 -----------------------------H-QGEV-NCVKWDPTGSLLASCSDD-----V-----------TAKIWNMKQ 367 (501)
Q Consensus 335 -----------------------------h-~~~v-~~v~~~~~~~~l~s~s~D-----g-----------~i~iwd~~~ 367 (501)
+ .+.+ ..+.+.|...+|..+... + .|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 0 0111 134566666665554421 2 455567778
Q ss_pred CceeeecccCCCCEEEE---------EEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe------------e
Q 010777 368 DKYVHDLREHSKEIYTI---------RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL------------N 426 (501)
Q Consensus 368 ~~~~~~~~~~~~~v~~i---------~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~------------~ 426 (501)
++..-.++.....+... ....+|. ...+++.+..+|.+.+.|.++|+.+... .
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~------~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~ 354 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGK------PRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVD 354 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCc------EEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccC
Confidence 87765554322222111 0111111 1247888999999999999999886321 0
Q ss_pred CCC-CCe----------------------------EEEEECCCCCEEEEEeC----------------------------
Q 010777 427 GHR-EPV----------------------------YSLAFSPTGEYLASGSL---------------------------- 449 (501)
Q Consensus 427 ~h~-~~v----------------------------~~l~~spdg~~lasgs~---------------------------- 449 (501)
... .++ ..++|+|...++.....
T Consensus 355 ~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p 434 (527)
T TIGR03075 355 LKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKP 434 (527)
T ss_pred CCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCC
Confidence 000 000 12566666554443222
Q ss_pred -----CCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 450 -----DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 450 -----Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
-|.|.-+|+.+|+++...+.......-.....|..+.++..+|.++.||.+
T Consensus 435 ~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~ 490 (527)
T TIGR03075 435 PPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAK 490 (527)
T ss_pred CCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECC
Confidence 246888888888887766543221111112255567777889999888864
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.43 E-value=0.09 Score=47.77 Aligned_cols=198 Identities=13% Similarity=0.201 Sum_probs=110.3
Q ss_pred eecCCCCCEEEEEecCCCCE-EEEEecCCeEEEEeCCCcceeEeeeecc-CCeEEEecCCCceEEEec-CCCeEEEEEcC
Q 010777 248 TLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIG 324 (501)
Q Consensus 248 ~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~ 324 (501)
.+.+-...+.+|+|+|+.+. +++....+.|...++ .++.++.+.... +..-.+.+..+..|+... .++.++++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 45555667999999998665 556666788888886 467777776554 556777887777776655 57888888874
Q ss_pred CCc---ce---eeec-----CCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCC---Cceee--e------cccCCCCEE
Q 010777 325 ENR---PI---KTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVH--D------LREHSKEIY 382 (501)
Q Consensus 325 ~~~---~~---~~~~-----~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~---~~~~~--~------~~~~~~~v~ 382 (501)
... .. ..+. .+...+-.++|+|.++.|+.+-+..-.+||.+.. ...+. . .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 11 1121 2345688999999887777777776667776543 11111 0 112234467
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC---------CCeEEEEECCCCCEEEEEeCCCcE
Q 010777 383 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLASGSLDKSM 453 (501)
Q Consensus 383 ~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~spdg~~lasgs~Dg~i 453 (501)
++.+.|... .+++.......|..+| ..|+.+..+.-.. ..--.|+|.++|++.++ |.-+..
T Consensus 175 ~l~~~p~t~--------~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf 244 (248)
T PF06977_consen 175 GLSYDPRTG--------HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF 244 (248)
T ss_dssp EEEEETTTT--------EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred ceEEcCCCC--------eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence 788877643 3566677788899999 5577655432111 23578999999976555 455555
Q ss_pred EEE
Q 010777 454 HIW 456 (501)
Q Consensus 454 ~iw 456 (501)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.35 E-value=0.2 Score=49.96 Aligned_cols=242 Identities=16% Similarity=0.237 Sum_probs=121.8
Q ss_pred cceeEEEECCCCCEEEE-EECCC----cEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 010777 154 SEVCACAWSPAGSLLAS-GSGDS----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 228 (501)
Q Consensus 154 ~~V~~~~~sp~~~~l~s-gs~D~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 228 (501)
..+..+++||+|++||- -+..| .|++.|+.++.... ..+... .-..+.|.++++.|+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i~~~---------~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGIENP---------KFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEEEEE---------ESEEEEECTTSSEEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Cccccc---------ccceEEEeCCCCEEE
Confidence 34557889999998773 34333 59999998774210 011110 012389999988877
Q ss_pred EEeCCC-----------eEEEEECCCce---eEeecCCCCC--EEEEEecCCCCEEEEEecC----CeEEEEeCCCc---
Q 010777 229 TGSYDG-----------QARIWSTNGDL---KCTLSKHKGP--IFSLKWNKKGDYLLTGSCD----KTAIVWDVKTE--- 285 (501)
Q Consensus 229 sg~~dg-----------~i~iw~~~~~~---~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D----~~i~iwd~~~~--- 285 (501)
-...+. .|+.|.+.... ...+...... ...+..++++++|+..+.. ..+.+.++..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 665443 36777765432 2344443333 5678889999987754332 23666677664
Q ss_pred --ceeEeeeeccCCeEEEecCCCceEEEec---CCCeEEEEEcCCCcc---eeeecCCCC--ceeEEEEcCCCCEEEEEe
Q 010777 286 --EWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP---IKTFAGHQG--EVNCVKWDPTGSLLASCS 355 (501)
Q Consensus 286 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~---~~~~~~h~~--~v~~v~~~~~~~~l~s~s 355 (501)
.+........+....+.......++.+. ..+.|...++..... ...+..|.. .+..+... .+.+++.-.
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~ 344 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYR 344 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEE
Confidence 3333222222333334444444444442 345666677766542 224455554 34444443 233445555
Q ss_pred CCC--eEEEEeCCCCceeeeccc-CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC--CCeEEEEeCCCCeE
Q 010777 356 DDV--TAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKL 421 (501)
Q Consensus 356 ~Dg--~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~ 421 (501)
.++ .|+++++..+.....+.. ..+.+..+...+.+. .+++...|. -+++.-||+.+++.
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~-------~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSD-------ELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-S-------EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCC-------EEEEEEeCCCCCCEEEEEECCCCCE
Confidence 555 578888873333322222 223344443333321 233333333 24566677776654
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0084 Score=63.06 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=60.0
Q ss_pred CCEEEEEeCCCeEEEEECCCceeE--eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeE
Q 010777 224 GTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 299 (501)
Q Consensus 224 ~~~l~sg~~dg~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 299 (501)
+..++.|+..|.+...|..+.... .-..-.++|++++|+.+|..++.|-.+|.|.+||..++...+.+..+..|..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456788888888888887665432 2223467999999999999999999999999999999888887776665543
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.15 Score=48.12 Aligned_cols=215 Identities=14% Similarity=0.130 Sum_probs=106.1
Q ss_pred ECCCCC-EEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec-cC-
Q 010777 220 WNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SG- 296 (501)
Q Consensus 220 ~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~- 296 (501)
|.++.. ++.+--..+.|.-|+........+.. .+.+.++.....+..|+++. .-+.++++.++..+..+... .+
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence 455555 44555566778888876444444432 33334444444444555553 34566776555542222111 11
Q ss_pred ---CeEEEecCCCceEEEecCC----------CeEEEEEcC-CCcceeeecCCCCceeEEEEcCCCCEEEEE-eCCCeEE
Q 010777 297 ---PTLDVDWRNNVSFATSSTD----------NMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAK 361 (501)
Q Consensus 297 ---~~~~~~~~~~~~~~~~~~d----------~~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-s~Dg~i~ 361 (501)
..++........|..+... ..-.+|.+. .+..++.+..+-..-+.|+||||++.+..+ +..+.|.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 1122222222333332222 011334333 344455555555667899999999766555 4457777
Q ss_pred EEeCCCCceeeecccCCCCEEEEEE-----cCCCCCCCCCCCcEEEEEEeCCC-eEEEEeCCCCeEEEEeeCCCCCeEEE
Q 010777 362 IWNMKQDKYVHDLREHSKEIYTIRW-----SPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHREPVYSL 435 (501)
Q Consensus 362 iwd~~~~~~~~~~~~~~~~v~~i~~-----~p~g~~~~~~~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l 435 (501)
-|++.... ...... ...+.+ .|+|.. ...+..++. ++-.+| .|..|+.. ++++..+.-....++++
T Consensus 189 r~~~d~~~----g~~~~~-~~~~~~~~~~G~PDG~~-vDadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 189 RYDLDPAT----GPIGGR-RGFVDFDEEPGLPDGMA-VDADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred EEecCccc----CccCCc-ceEEEccCCCCCCCceE-EeCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 77765200 000000 101111 233321 111222333 333443 89999988 88888877665677888
Q ss_pred EEC-CCCCEEE
Q 010777 436 AFS-PTGEYLA 445 (501)
Q Consensus 436 ~~s-pdg~~la 445 (501)
+|- |+.+.|.
T Consensus 261 ~FgG~~~~~L~ 271 (307)
T COG3386 261 AFGGPDLNTLY 271 (307)
T ss_pred eEeCCCcCEEE
Confidence 884 4444443
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.33 E-value=0.02 Score=44.08 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=63.4
Q ss_pred eeEEEECC---CC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEe
Q 010777 156 VCACAWSP---AG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 231 (501)
Q Consensus 156 V~~~~~sp---~~-~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 231 (501)
|+++++.. || +-|+.||.|..||+|+=.. .+..+. ....|++++-... ..|+.|.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------------~~~Ei~-----e~~~v~~L~~~~~-~~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------------IVAEIT-----ETDKVTSLCSLGG-GRFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------------EEEEEe-----cccceEEEEEcCC-CEEEEEe
Confidence 56666654 43 5799999999999997321 111111 2456778776665 6789999
Q ss_pred CCCeEEEEECCCceeEeecCCCCCEEEEEecC-C--C-CEEEEEecCCeEE
Q 010777 232 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-K--G-DYLLTGSCDKTAI 278 (501)
Q Consensus 232 ~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~-~--~-~~l~s~s~D~~i~ 278 (501)
.+|+|-+|+.....-..-..| .++++.+.. + | ..|++|-.+|.|-
T Consensus 61 ~NGTVGvY~~~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 61 ANGTVGVYDRSQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCEEEEEeCcceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999999998644332222222 355665443 2 2 3688888888764
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.2 Score=49.28 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=140.1
Q ss_pred EEEEecCCCCEE-EEEecCCeEEEEeCCCcceeEeeeeccCC-eEEEecCCCceEEEec--CCCeEEEEEcCCCcceeee
Q 010777 257 FSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSS--TDNMIYVCKIGENRPIKTF 332 (501)
Q Consensus 257 ~~l~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~ 332 (501)
.++..++.+..+ ++...+..|.+.|..+............+ -..+++.....+++-. .++.+.+.+..+.+.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 467778888754 44555689999998777666555443322 3344445555666666 4788888888888777664
Q ss_pred cCCCCceeEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceee-e---cccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC
Q 010777 333 AGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVH-D---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 407 (501)
Q Consensus 333 ~~h~~~v~~v~~~~~~~~l~-s~s~Dg~i~iwd~~~~~~~~-~---~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~ 407 (501)
..-..+ ..+++.|+|+.+. +-..++.|.+.|.......+ . .......-..+.++|+|. .+.++...
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~--------~~yV~~~~ 227 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGN--------RVYVANDG 227 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCC--------EEEEEecc
Confidence 432334 7899999999654 44578899999976654442 1 011122335677788875 12233222
Q ss_pred --CCeEEEEeCCCCeEEEE-eeCCCCCeEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEecC----CCEEEEEEC
Q 010777 408 --DSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGN----GGIFEVCWN 479 (501)
Q Consensus 408 --dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~lasgs-~Dg~i~iw~~~~~~~~~~~~~~----~~i~~~~ws 479 (501)
++.+...|..++..... ...-...-..+.++|+|.++.+.. ..+.+.+-|..+..+....... ..++.+++.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 37899999988777654 221111345689999999988774 4488999999988877765432 235666666
Q ss_pred CCC
Q 010777 480 KEG 482 (501)
Q Consensus 480 ~~g 482 (501)
+..
T Consensus 308 ~~~ 310 (381)
T COG3391 308 PLY 310 (381)
T ss_pred eec
Confidence 654
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.0013 Score=56.95 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=72.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeecccC-CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEee
Q 010777 348 GSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 426 (501)
Q Consensus 348 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 426 (501)
+..+++|+.+|.|.+|.+........+... ...+-+. -|.+. ...+.++++.||.||.|++.-.+.+-...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~------~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGR------DSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec--ccccc------ccceeEEeccCCceeeeccccCceeeeec
Confidence 456889999999999987632221111111 1111111 13332 12378889999999999999888888888
Q ss_pred CCC-CCeEEEEECCCCCEEEEE--eCCCcEEEEeCCC
Q 010777 427 GHR-EPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE 460 (501)
Q Consensus 427 ~h~-~~v~~l~~spdg~~lasg--s~Dg~i~iw~~~~ 460 (501)
.|. .++..+..+..+.+|+.+ |.|..++.|++..
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 887 677777777778888888 8888899998764
No 373
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.22 E-value=0.079 Score=48.11 Aligned_cols=195 Identities=14% Similarity=0.184 Sum_probs=104.7
Q ss_pred EccCCccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCE
Q 010777 148 ILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 226 (501)
Q Consensus 148 ~l~~H~~~V~~~~~sp~~~-~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 226 (501)
.+.+-...+.+++|+|+.. +++.....+.|...+.. |.. ++...- ......-.+++..++.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v-------------lr~i~l---~g~~D~EgI~y~g~~~~ 78 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV-------------LRRIPL---DGFGDYEGITYLGNGRY 78 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E-------------EEEEE----SS-SSEEEEEE-STTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE-------------EEEEeC---CCCCCceeEEEECCCEE
Confidence 3445556799999999865 55555567777666653 321 111111 11356788889888888
Q ss_pred EEEEeCCCeEEEEECCC--c---e--eE--e--ec-CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC---cceeEee
Q 010777 227 LATGSYDGQARIWSTNG--D---L--KC--T--LS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQF 291 (501)
Q Consensus 227 l~sg~~dg~i~iw~~~~--~---~--~~--~--~~-~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~---~~~~~~~ 291 (501)
+++--.++.+.+++... . . .. . +. .++..+-+|+|.|.++.|+.+-...-..+|.++. .......
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 88776789998887632 1 0 11 1 11 3455689999999999888887776666776543 1111110
Q ss_pred e--------eccCCeEE--EecCCCceEEEecCCCeEEEEEcCCCcceeeec--C-CC------CceeEEEEcCCCCEEE
Q 010777 292 E--------FHSGPTLD--VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA--G-HQ------GEVNCVKWDPTGSLLA 352 (501)
Q Consensus 292 ~--------~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~-h~------~~v~~v~~~~~~~~l~ 352 (501)
. .......+ ++...+..++.+.....|..++ ..++++..+. . .. ...-.|+|.++|++.+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 0 01111223 3444566788888888888888 4455544432 1 11 2467899999997766
Q ss_pred EEeCCCeEE
Q 010777 353 SCSDDVTAK 361 (501)
Q Consensus 353 s~s~Dg~i~ 361 (501)
++ +-+...
T Consensus 238 vs-EpNlfy 245 (248)
T PF06977_consen 238 VS-EPNLFY 245 (248)
T ss_dssp EE-TTTEEE
T ss_pred Ec-CCceEE
Confidence 54 444433
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.011 Score=57.38 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=93.9
Q ss_pred EEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe--EEEEeeCC
Q 010777 351 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGH 428 (501)
Q Consensus 351 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h 428 (501)
+.++..-..++-.|+..|+.+.+...+.. |.-+.+.|+.........+.+ .|-.|..|.=||.+... .+....+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl--vGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL--VGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccE--EeecCCceEEecccccCcceeeeeecc
Confidence 44555556788889999999988877765 777777887764333222222 36678889999987322 22222333
Q ss_pred C----CCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeE-EEEecC-CCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 429 R----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 429 ~----~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~-~~~~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
. ....|.+-..+| +||.||.+|.|++||. .+..- ..+++- ..|..+.-+.+|++|++.+.. .+.+.+.
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 1 234455554444 7999999999999997 44433 335554 359999999999988766544 5555544
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.03 E-value=0.19 Score=52.02 Aligned_cols=191 Identities=15% Similarity=0.175 Sum_probs=101.4
Q ss_pred CCeEEEEECCCCCEEEEEe------CCC--eEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCe-EEEEeCC
Q 010777 213 KDVTTLDWNGEGTLLATGS------YDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT-AIVWDVK 283 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~------~dg--~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~-i~iwd~~ 283 (501)
..+...+.||+|+.++..- .|. .+.+++..+.......+. ..+.-.|+|+|..|.+.+.... +++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~- 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD- 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc-
Confidence 4578889999999887655 244 444445444333223332 3677889999988887753212 222211
Q ss_pred CcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEE-
Q 010777 284 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI- 362 (501)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~i- 362 (501)
...+.+++..+..+...+ ...+.|..+.|||||..+|... +|.|.+
T Consensus 427 -----------------------------~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 427 -----------------------------PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred -----------------------------CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 112344444554433322 2345699999999999887665 467766
Q ss_pred --EeCCCCce-e---eeccc-CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEeeC--CCCCe
Q 010777 363 --WNMKQDKY-V---HDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNG--HREPV 432 (501)
Q Consensus 363 --wd~~~~~~-~---~~~~~-~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~--h~~~v 432 (501)
-....+.. + ..+.. ....+..+.|.+++. |+.+..++...+|.+.- |.....+.+ ...++
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~----------L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v 543 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS----------LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPV 543 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEecCCE----------EEEEecCCCCceEEEecCCccccccCCCCccCce
Confidence 33333321 1 11211 223357788988774 23334444444454321 221111122 24567
Q ss_pred EEEEECCCCCEEEEEeCCC
Q 010777 433 YSLAFSPTGEYLASGSLDK 451 (501)
Q Consensus 433 ~~l~~spdg~~lasgs~Dg 451 (501)
.+|+=+++ -|.....+|
T Consensus 544 ~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 544 VAVAASPS--TVYVTDARA 560 (591)
T ss_pred EEEecCCc--eEEEEcCCc
Confidence 77776663 233334455
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0043 Score=65.08 Aligned_cols=93 Identities=23% Similarity=0.285 Sum_probs=72.3
Q ss_pred EEEEEeCCCeEEEEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec----CCCEEE
Q 010777 401 ILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFE 475 (501)
Q Consensus 401 ~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~----~~~i~~ 475 (501)
.++.|+.-|.|-..|+... .....-..-.++|++++|+.+|.+++.|=.+|.|.+||...+++++.+.. +.++..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 5778888888988887642 11122222357899999999999999999999999999999988877754 335778
Q ss_pred EEECCCCCEEEEEECCCe
Q 010777 476 VCWNKEGDKIAACFANHT 493 (501)
Q Consensus 476 ~~ws~~g~~la~~~~d~~ 493 (501)
+-|..++..+.++...|.
T Consensus 181 v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEeCCCcEEEEccCCCc
Confidence 888888887777777776
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.87 E-value=0.26 Score=51.06 Aligned_cols=222 Identities=15% Similarity=0.265 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCC------eEEEEECCCceeEeecC--CCCCEEEEEecCCCCEEEEEecC------CeEEEEeCCCccee
Q 010777 223 EGTLLATGSYDG------QARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWK 288 (501)
Q Consensus 223 ~~~~l~sg~~dg------~i~iw~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D------~~i~iwd~~~~~~~ 288 (501)
.+.+++.||..+ .+..+|........+.. +.....+++.. ++...++|+.| .++..||+++.+|.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 455666777663 56677765442222111 12223344433 34566788888 46788999998887
Q ss_pred EeeeeccC-CeEEEecCCCceEEEecCCCe-----EEEEEcCCCc--ceeeecCCCCceeEEEEcCCCCEEEEEeCCC--
Q 010777 289 QQFEFHSG-PTLDVDWRNNVSFATSSTDNM-----IYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-- 358 (501)
Q Consensus 289 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~-----i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-- 358 (501)
..-..... .-..+...++..++.++.||. +-.||..+.+ .+..+.......-.+ .-+|.+.++||.++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCc
Confidence 63322211 122333446667788877764 3445544332 111111111111112 23688888888765
Q ss_pred ----eEEEEeCCCCcee--eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCe-----EEEEeCCCCeE--EEEe
Q 010777 359 ----TAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-----VKLWDVELGKL--LYSL 425 (501)
Q Consensus 359 ----~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~-----i~iwd~~~~~~--~~~~ 425 (501)
++..||..++... ..+........ ++. -++ .+.+.|+.|+. |..||..+.+- +..+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~---------~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNG---------KIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEE-ECC---------EEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 4567877665432 22221111111 111 111 25667777763 66677765442 2222
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEeCCC
Q 010777 426 NGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKE 460 (501)
Q Consensus 426 ~~h~~~v~~l~~spdg~~lasgs~Dg-----~i~iw~~~~ 460 (501)
......+..+.+ ++...|+||.|| +|..||..+
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 222233323333 566778888776 455555544
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.84 E-value=0.87 Score=48.29 Aligned_cols=321 Identities=14% Similarity=0.177 Sum_probs=162.6
Q ss_pred ccceeEEEECCCC------CEEEEEECCCcEEEEec-CCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCC
Q 010777 153 TSEVCACAWSPAG------SLLASGSGDSTARIWTI-ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 225 (501)
Q Consensus 153 ~~~V~~~~~sp~~------~~l~sgs~D~~i~iWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 225 (501)
...|.|+.++|-| ++++.|..+..+.+--. .+... .......+ ......|...+|-.|..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~-----------~~~~~l~~--~~iPRSIl~~~~e~d~~ 596 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL-----------ITHEQLSG--EIIPRSILLTTFEGDIH 596 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce-----------eeeeccCC--CccchheeeEEeeccce
Confidence 3679999999852 26888887666554432 22111 01111111 11234577778888899
Q ss_pred EEEEEeCCCeEEEEECC--CceeEee---cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEE
Q 010777 226 LLATGSYDGQARIWSTN--GDLKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 300 (501)
Q Consensus 226 ~l~sg~~dg~i~iw~~~--~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 300 (501)
+|+++..||.+..+..+ ....... .--+.|+.=-.|+..+..-+-|.+|+-..+|--+..-+...+... .+..
T Consensus 597 yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k--ev~~ 674 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK--EVNH 674 (1096)
T ss_pred EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH--Hhhh
Confidence 99999999999877543 2211111 112345554556655544444445666666653322111111100 0111
Q ss_pred Ee-cCC--CceEEEecCCCeEEEEEcCCCc--ceeeecCCCCceeEEEEcCCCCEEEEEeCC--------------CeEE
Q 010777 301 VD-WRN--NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD--------------VTAK 361 (501)
Q Consensus 301 ~~-~~~--~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~s~D--------------g~i~ 361 (501)
++ |.+ ....+.....+.+.+..+..-+ .+++.. -......+++.+...++++.+.- ..++
T Consensus 675 ~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~ 753 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLR 753 (1096)
T ss_pred hcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEE
Confidence 11 111 1112233334445554443211 122221 12234456666544444443321 1356
Q ss_pred EEeCCCCceeeeccc-CCC---CEEEEEEcCCCCCCCCCCCcEEEEEEeC----------CCeEEEEeCCCCeEEEEeeC
Q 010777 362 IWNMKQDKYVHDLRE-HSK---EIYTIRWSPTGSGTNNPNQQLILASASF----------DSTVKLWDVELGKLLYSLNG 427 (501)
Q Consensus 362 iwd~~~~~~~~~~~~-~~~---~v~~i~~~p~g~~~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~~ 427 (501)
++|-++-..++.... ... .+.++.|..+. + .+++.|.. .|.|.+|....+..+..+..
T Consensus 754 vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~------~--t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e 825 (1096)
T KOG1897|consen 754 VLDQNTFEVLSSHEFERNETALSIISCKFTDDP------N--TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE 825 (1096)
T ss_pred EecCCceeEEeeccccccceeeeeeeeeecCCC------c--eEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence 777666554432211 111 23333454332 1 24444431 35666666554332222211
Q ss_pred --CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEE-ecCCCEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 428 --HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 428 --h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~-~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
-.+.++++.- -+|++||. -...|++|+..+++.++.- .....++.+.....|+.+|+|..-+++.+.-.|
T Consensus 826 ~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 826 TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 2355666532 25677664 5678999999988555442 334568889999999999999988888776554
No 379
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.82 E-value=0.43 Score=44.49 Aligned_cols=225 Identities=15% Similarity=0.208 Sum_probs=114.2
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 010777 164 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 243 (501)
Q Consensus 164 ~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~ 243 (501)
.++.|+.|..+| +.++++..... .... .+...|..+...++-+.|+.-+ |+.++++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-------~~~i-----------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-------PTRI-----------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-------ceeE-----------eecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 578899999998 88888722110 0000 0123388888888766666544 59999998653
Q ss_pred ceeEe---------------ecCCCCCEEEEE--ecCCCCEEEEEecCCeEEEEeCCCc-----ceeEeeeeccCCeEEE
Q 010777 244 DLKCT---------------LSKHKGPIFSLK--WNKKGDYLLTGSCDKTAIVWDVKTE-----EWKQQFEFHSGPTLDV 301 (501)
Q Consensus 244 ~~~~~---------------~~~h~~~V~~l~--~~~~~~~l~s~s~D~~i~iwd~~~~-----~~~~~~~~~~~~~~~~ 301 (501)
-.... .......+...+ -.+.+...+.....++|.+|..... ...+.+.. ...+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence 11111 111222344333 1234444555556678988877552 23333333 3556677
Q ss_pred ecCCCceEEEecCCCeEEEEEcCCCcceeeecCC------------CCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 010777 302 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 369 (501)
Q Consensus 302 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~ 369 (501)
.|..+..++.. .....+.++.++.+...+... ..++..+.. +++.+|++- |..-.+.|. .|.
T Consensus 145 ~~~~~~i~v~~--~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~ 218 (275)
T PF00780_consen 145 AFLGNKICVGT--SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGE 218 (275)
T ss_pred EEeCCEEEEEe--CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCC
Confidence 77755444433 333556666654443322111 122333333 345555543 222233333 332
Q ss_pred eee--ecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCC
Q 010777 370 YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 428 (501)
Q Consensus 370 ~~~--~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h 428 (501)
..+ .+.- ......+++... +|+..+ ++.|.||++.++++++++...
T Consensus 219 ~~r~~~i~W-~~~p~~~~~~~p-----------yli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 219 PSRKSTIQW-SSAPQSVAYSSP-----------YLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred cCcccEEEc-CCchhEEEEECC-----------EEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 221 1111 112223333221 444433 466999999999998888753
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.77 E-value=0.2 Score=49.08 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=37.7
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 010777 425 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 470 (501)
Q Consensus 425 ~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~ 470 (501)
+......+.+|+.+|++++.|+...=|+|.++|+.++.+++.+.+-
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 4444556889999999998888766799999999999988888763
No 381
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.77 E-value=0.19 Score=46.23 Aligned_cols=144 Identities=15% Similarity=0.215 Sum_probs=84.0
Q ss_pred ceeEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 010777 338 EVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 414 (501)
Q Consensus 338 ~v~~v~~~~~~~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 414 (501)
.+.+.+++++++.+|... ....+.++.. +.....+. ....+..-.|++++. +.+....+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~---------~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGW---------VWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCC---------EEEEEcCCCceEEE
Confidence 688899999999877665 2234555543 32222221 223566667887764 44444455566666
Q ss_pred e-CCCCeEE-EEee--CCCCCeEEEEECCCCCEEEEEe---CCCcEEEEeCC---CC---eeE---EEEec-CCCEEEEE
Q 010777 415 D-VELGKLL-YSLN--GHREPVYSLAFSPTGEYLASGS---LDKSMHIWSLK---EG---KIV---KTYTG-NGGIFEVC 477 (501)
Q Consensus 415 d-~~~~~~~-~~~~--~h~~~v~~l~~spdg~~lasgs---~Dg~i~iw~~~---~~---~~~---~~~~~-~~~i~~~~ 477 (501)
. ...+... ..+. .-...|+.+.+||||..+|.-. .++.|.+=-+. .| .+. ..... ...+.+++
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence 3 2333221 1121 1122799999999999877554 35677776543 23 111 11111 34688999
Q ss_pred ECCCCCEEEEEECCCe
Q 010777 478 WNKEGDKIAACFANHT 493 (501)
Q Consensus 478 ws~~g~~la~~~~d~~ 493 (501)
|.+++.+++.+...+.
T Consensus 173 W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 173 WSDDSTLVVLGRSAGG 188 (253)
T ss_pred ecCCCEEEEEeCCCCC
Confidence 9999998887755443
No 382
>PHA02713 hypothetical protein; Provisional
Probab=96.70 E-value=0.28 Score=50.75 Aligned_cols=184 Identities=3% Similarity=0.072 Sum_probs=89.6
Q ss_pred CCCEEEEEecC------CeEEEEeCCCcceeEeeeeccC-CeEEEecCCCceEEEecCCC-----eEEEEEcCCCc--ce
Q 010777 264 KGDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENR--PI 329 (501)
Q Consensus 264 ~~~~l~s~s~D------~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~--~~ 329 (501)
++..++.|+.+ .++..||+.+..|...-..... .-..+...++..++.|+.++ .+..|+..++. .+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45556666643 3577899988877543221111 01122233555666666543 36667765432 11
Q ss_pred eeecCCCCceeEEEEcCCCCEEEEEeCCC-----------------------eEEEEeCCCCcee--eecccCCCCEEEE
Q 010777 330 KTFAGHQGEVNCVKWDPTGSLLASCSDDV-----------------------TAKIWNMKQDKYV--HDLREHSKEIYTI 384 (501)
Q Consensus 330 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg-----------------------~i~iwd~~~~~~~--~~~~~~~~~v~~i 384 (501)
..+.........+. -+|++.+.||.++ .+..||..+.+.. ..+.........+
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 11111111111222 2677778887653 3566776554332 1111110000011
Q ss_pred EEcCCCCCCCCCCCcEEEEEEeCC------CeEEEEeCCC-C--eEEEEeeCCCCCeEEEEECCCCCEEEEEeCCC--cE
Q 010777 385 RWSPTGSGTNNPNQQLILASASFD------STVKLWDVEL-G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SM 453 (501)
Q Consensus 385 ~~~p~g~~~~~~~~~~~l~sgs~d------g~i~iwd~~~-~--~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg--~i 453 (501)
. -+ +..+ +.|+.+ ..+..||..+ . ..+..+.........+++ +|+..++||.++ ++
T Consensus 461 ~--~~--------~~IY-v~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 461 S--HK--------DDIY-VVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred E--EC--------CEEE-EEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeeh
Confidence 1 11 2234 445543 2467788775 3 333344433333344444 678889999988 77
Q ss_pred EEEeCCCCe
Q 010777 454 HIWSLKEGK 462 (501)
Q Consensus 454 ~iw~~~~~~ 462 (501)
..||..+.+
T Consensus 528 e~yd~~~~~ 536 (557)
T PHA02713 528 DTFNVYTYE 536 (557)
T ss_pred hhcCccccc
Confidence 778777654
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.61 E-value=0.0076 Score=38.72 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCee
Q 010777 429 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 463 (501)
Q Consensus 429 ~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~ 463 (501)
...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5543
No 384
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.58 E-value=0.75 Score=44.05 Aligned_cols=139 Identities=11% Similarity=0.105 Sum_probs=84.7
Q ss_pred CCEEEEEeC---------C-CeEEEEECCCc-----eeE--eecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcc
Q 010777 224 GTLLATGSY---------D-GQARIWSTNGD-----LKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 224 ~~~l~sg~~---------d-g~i~iw~~~~~-----~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~ 286 (501)
-.+|+.|.. . |.|.+++.... ... .-....++|++++-- +.+|+.+. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc
Confidence 467777644 2 88999987652 111 123457899998765 34455544 5899999998877
Q ss_pred -eeEeeeecc-CCeEEEecCCCceEEEecCCCeEEEEEcCC-CcceeeecC--CCCceeEEEEcCCCCEEEEEeCCCeEE
Q 010777 287 -WKQQFEFHS-GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAK 361 (501)
Q Consensus 287 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~s~Dg~i~ 361 (501)
+...-..+. ..+.++....+ .++.+.....+.++.... ...+..+.. ....++++.+-+++..++.+..+|.+.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 554443322 34555555545 555565556666654443 222333322 234578888887777999999999999
Q ss_pred EEeCC
Q 010777 362 IWNMK 366 (501)
Q Consensus 362 iwd~~ 366 (501)
++...
T Consensus 198 ~l~~~ 202 (321)
T PF03178_consen 198 VLRYN 202 (321)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 98765
No 385
>PRK13684 Ycf48-like protein; Provisional
Probab=96.55 E-value=0.8 Score=44.05 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=80.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEE-EEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 010777 336 QGEVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 414 (501)
Q Consensus 336 ~~~v~~v~~~~~~~~l~s~s~Dg~i~-iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 414 (501)
.+.+.++.+.|++.+++++. .|.+. .++-...............++.+.+.|++. +++. +..|.+++=
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~---------~~~v-g~~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN---------LWML-ARGGQIRFN 240 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC---------EEEE-ecCCEEEEc
Confidence 45688999999987776654 45443 222211112111223345678888888775 3343 345766542
Q ss_pred eCCCCeEEEEeeC----CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe---c-CCCEEEEEECCCCCEEE
Q 010777 415 DVELGKLLYSLNG----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT---G-NGGIFEVCWNKEGDKIA 486 (501)
Q Consensus 415 d~~~~~~~~~~~~----h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~---~-~~~i~~~~ws~~g~~la 486 (501)
....+..-..... -...+.+++|.|++..+++| .+|.|. .....|+.-.... . ...++.+.|..+++.+|
T Consensus 241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred cCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 2333332111111 12357889999988866654 566554 3444444222211 1 12478888887776655
Q ss_pred EEECCCeEEEE
Q 010777 487 ACFANHTVCVL 497 (501)
Q Consensus 487 ~~~~d~~v~v~ 497 (501)
+ +..|.|..+
T Consensus 319 ~-G~~G~il~~ 328 (334)
T PRK13684 319 L-GQRGVLLRY 328 (334)
T ss_pred E-CCCceEEEe
Confidence 4 456666555
No 386
>PHA02713 hypothetical protein; Provisional
Probab=96.53 E-value=0.24 Score=51.33 Aligned_cols=209 Identities=9% Similarity=0.048 Sum_probs=96.2
Q ss_pred eEEEEeCCCcceeEeeeeccCC-eEEEecCCCceEEEecCC------CeEEEEEcCCCcc--eeeecCCCCceeEEEEcC
Q 010777 276 TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP 346 (501)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~ 346 (501)
.+..||+.+..|...-...... -.++...++..++.|+.+ ..+..++...+.- +..+.........+ .-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EE
Confidence 5677888887765422211111 112223355566666542 2456666554421 11111111111122 23
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCcee--eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC-----------
Q 010777 347 TGSLLASCSDDV-----TAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD----------- 408 (501)
Q Consensus 347 ~~~~l~s~s~Dg-----~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d----------- 408 (501)
+|++.+.||.++ ++..||..+.... ..+.........+.. ++ . +.+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g--------~-IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ--------Y-IYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC--------E-EEEEeCCCccccccccccc
Confidence 678888888764 4778887765432 122111111111111 22 2 34445543
Q ss_pred ------------CeEEEEeCCCCe--EEEEeeCCCCCeEEEEECCCCCEEEEEeCC------CcEEEEeCCC-Ce--eEE
Q 010777 409 ------------STVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLASGSLD------KSMHIWSLKE-GK--IVK 465 (501)
Q Consensus 409 ------------g~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spdg~~lasgs~D------g~i~iw~~~~-~~--~~~ 465 (501)
..+..||..+.+ .+..+.........+++ +|+..+.||.+ ..+..||..+ .+ .+.
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 246667766543 11122111111111222 46666777754 2467899876 33 333
Q ss_pred EEecCCCEEEEEECCCCCEEEEEECCC--eEEEEEee
Q 010777 466 TYTGNGGIFEVCWNKEGDKIAACFANH--TVCVLDFR 500 (501)
Q Consensus 466 ~~~~~~~i~~~~ws~~g~~la~~~~d~--~v~v~~~~ 500 (501)
.++.......++ .-+|+..++|+.++ ++..||..
T Consensus 498 ~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 498 TTESRLSALHTI-LHDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ccCcccccceeE-EECCEEEEEeeecceeehhhcCcc
Confidence 332221111111 12678888888887 66666653
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.46 E-value=0.13 Score=45.05 Aligned_cols=136 Identities=13% Similarity=0.234 Sum_probs=83.3
Q ss_pred EECCCCCEEEEEeCC---------CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEE-EEEecCCeEEEEe--CCCcc
Q 010777 219 DWNGEGTLLATGSYD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWD--VKTEE 286 (501)
Q Consensus 219 ~~s~~~~~l~sg~~d---------g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~i~iwd--~~~~~ 286 (501)
..+|+|++++-...| |.++.|-...+....... -+--.+|+|+.+.+.+ +.-+.+-+|.-|| ..++.
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh-ccCCccccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 457899985433332 344555443332222211 1222567888766654 4556677777776 44543
Q ss_pred eeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 287 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
... .-.+++++..++...+ ....+++..+|.+.+++-.-++|...|..
T Consensus 194 ~sn---------------------------r~~i~dlrk~~~~e~~-----~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 194 LSN---------------------------RKVIFDLRKSQPFESL-----EPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred ccC---------------------------cceeEEeccCCCcCCC-----CCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 211 1123444443332221 12334556689999999999999999999
Q ss_pred CCceeeecccCCCCEEEEEEc
Q 010777 367 QDKYVHDLREHSKEIYTIRWS 387 (501)
Q Consensus 367 ~~~~~~~~~~~~~~v~~i~~~ 387 (501)
+++.+.++.-....+++++|-
T Consensus 242 tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCcEEEEEEcCCCceEEEEec
Confidence 999999999889999999985
No 388
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.45 E-value=0.0012 Score=67.77 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=71.0
Q ss_pred EEccCCccceeEEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEEC---C
Q 010777 147 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN---G 222 (501)
Q Consensus 147 ~~l~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s---~ 222 (501)
.+++|-.++|-.++|-. +...++ -.=|.+.+|++.- ..+..+.. +. -+....+ ..++.-+.|. +
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~--l~G~iq~~----l~-v~~~~p~---gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDV--LQGEIQPQ----LE-VTPITPY---GSDPQLVSWCPIAV 193 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHh--hccccccc----eE-EeecCcC---CCCcceeeeccccc
Confidence 45778888898888843 222222 2226788998753 11111110 11 1111111 1223444444 4
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEE-----------ecCCCCEEEEEecCCeEEEEeC
Q 010777 223 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-----------WNKKGDYLLTGSCDKTAIVWDV 282 (501)
Q Consensus 223 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~s~D~~i~iwd~ 282 (501)
..-++..+-.++.|++...+......+.+|...++.++ .+|||..|+.++.||.++.|.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 56777778888888887665443344555765544433 4788888888888888888864
No 389
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.44 E-value=0.69 Score=42.04 Aligned_cols=179 Identities=14% Similarity=0.145 Sum_probs=109.2
Q ss_pred EEEEEecCCCCEEEEEecCC--eEEEEeCCCcceeEeeeeccCC-eEEEecCCCceEEEecCCCeEEEEEcCCCcceeee
Q 010777 256 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 332 (501)
Q Consensus 256 V~~l~~~~~~~~l~s~s~D~--~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 332 (501)
..++.|..+|..+-+.+.-| .|+.+|+.+++..........- --.+...++..+...=.++..+++|..+-+++..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 46788877777777777766 6899999999877655443221 11233335555666667788889999887777776
Q ss_pred cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccC--C---CCEEEEEEcCCCCCCCCCCCcEEEEEEeC
Q 010777 333 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF 407 (501)
Q Consensus 333 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~---~~v~~i~~~p~g~~~~~~~~~~~l~sgs~ 407 (501)
.- .+.=..++ .|++.|+.......++++|..+.+....+... . ..+.-+.|. +| .+.|-.-.
T Consensus 127 ~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G---------~IyANVW~ 193 (264)
T PF05096_consen 127 PY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG---------KIYANVWQ 193 (264)
T ss_dssp E--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT---------EEEEEETT
T ss_pred ec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC---------EEEEEeCC
Confidence 52 34556666 35666666666678999998776665544322 1 233445553 33 24555555
Q ss_pred CCeEEEEeCCCCeEEEEeeC------------C---CCCeEEEEECCCCC-EEEEE
Q 010777 408 DSTVKLWDVELGKLLYSLNG------------H---REPVYSLAFSPTGE-YLASG 447 (501)
Q Consensus 408 dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~l~~spdg~-~lasg 447 (501)
...|...|..+|+.+..+.- + ....+.|||.|... +++||
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66788889999998876531 1 24578999988765 45555
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.40 E-value=1.2 Score=44.41 Aligned_cols=237 Identities=15% Similarity=0.190 Sum_probs=116.9
Q ss_pred eEEEEECCCCCEEEEE-eCCC----eEEEEECCCceeE--eecCCCCCEEEEEecCCCCEEEEEecCC-----------e
Q 010777 215 VTTLDWNGEGTLLATG-SYDG----QARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDK-----------T 276 (501)
Q Consensus 215 V~~~~~s~~~~~l~sg-~~dg----~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----------~ 276 (501)
+..+.+||+|++++-+ +..| .++++|+...... .+..-. -..+.|.++++.|+-...+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467889999998865 3333 5899998765332 222111 12399999988876554333 3
Q ss_pred EEEEeCCCccee--EeeeeccCC--eEEEecCCC--ceEEEec--CC-CeEEEEEcCCC----cceeeecCCCCce-eEE
Q 010777 277 AIVWDVKTEEWK--QQFEFHSGP--TLDVDWRNN--VSFATSS--TD-NMIYVCKIGEN----RPIKTFAGHQGEV-NCV 342 (501)
Q Consensus 277 i~iwd~~~~~~~--~~~~~~~~~--~~~~~~~~~--~~~~~~~--~d-~~i~~~~~~~~----~~~~~~~~h~~~v-~~v 342 (501)
|+.|.+.+.... ..|.....+ ...+....+ ..++.+. .+ ..+++.+.... .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 778887665433 333333333 334444333 2333332 23 45777777664 2223332222222 333
Q ss_pred EEcCCCCEEEEEeC---CCeEEEEeCCCCce---eeecccCCCC--EEEEEEcCCCCCCCCCCCcEEEEEEeCCC--eEE
Q 010777 343 KWDPTGSLLASCSD---DVTAKIWNMKQDKY---VHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDS--TVK 412 (501)
Q Consensus 343 ~~~~~~~~l~s~s~---Dg~i~iwd~~~~~~---~~~~~~~~~~--v~~i~~~p~g~~~~~~~~~~~l~sgs~dg--~i~ 412 (501)
... .+.+++.... .+.|.-.++..... ...+..+... +..+.. .+. .+++....++ .|+
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~--------~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKD--------YLVLSYRENGSSRLR 352 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETT--------EEEEEEEETTEEEEE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECC--------EEEEEEEECCccEEE
Confidence 333 3344433322 34555556554432 1133333332 333332 221 3555555555 478
Q ss_pred EEeCCCCeEEEEeeC-CCCCeEEEEECCCCCEE-E-EEeC--CCcEEEEeCCCCeeE
Q 010777 413 LWDVELGKLLYSLNG-HREPVYSLAFSPTGEYL-A-SGSL--DKSMHIWSLKEGKIV 464 (501)
Q Consensus 413 iwd~~~~~~~~~~~~-h~~~v~~l~~spdg~~l-a-sgs~--Dg~i~iw~~~~~~~~ 464 (501)
++++..+.....+.. -.+.|..+...+++..+ + ..|. -++|..||+.++++.
T Consensus 353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 888884444444432 23446666666665433 2 3333 357888888888753
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.37 E-value=0.9 Score=42.64 Aligned_cols=267 Identities=15% Similarity=0.211 Sum_probs=117.7
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEe---ecCC---CCCEEEEEecCCCCEEEEEecCCeEEEEeCCCc
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 285 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~---~~~h---~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~ 285 (501)
..++..|.|..+..-++.|. .+.| +-..++...-. .... .-...++.|..+ ..+++ +..+.|. .....+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~ll-~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLLL-HTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEEE-EESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceEE-EecCCC
Confidence 45789999996666666654 4543 22333332111 1111 112566777543 33444 4455433 333333
Q ss_pred c-eeEeeee--ccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcc-eeeecCCCCceeEEEEcCCCCEEEEEeCCCeEE
Q 010777 286 E-WKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 361 (501)
Q Consensus 286 ~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~ 361 (501)
. +...... ..+....+...........+..+.|+.-.-. ++. ......-.+.+..+..+++|+++++++.-....
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~Dg-G~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~ 169 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDG-GKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS 169 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESST-TSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCC-CCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE
Confidence 2 3322110 1112222222222233333344544432211 111 111233446788888999999998887766667
Q ss_pred EEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC-CCeEEEE----eeCCCCCeEEEE
Q 010777 362 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS----LNGHREPVYSLA 436 (501)
Q Consensus 362 iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~----~~~h~~~v~~l~ 436 (501)
-|+--.......-+.....+..+.|.|++. +++ ....|.|++=+.. ....... +..-.-.+.+++
T Consensus 170 s~~~G~~~w~~~~r~~~~riq~~gf~~~~~--------lw~--~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSSRRIQSMGFSPDGN--------LWM--LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLA 239 (302)
T ss_dssp EE-TT-SS-EEEE--SSS-EEEEEE-TTS---------EEE--EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred EecCCCccceEEccCccceehhceecCCCC--------EEE--EeCCcEEEEccCCCCccccccccCCcccCceeeEEEE
Confidence 787543222222334567899999999874 233 3378888887722 2221111 111223478999
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe----cCCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 437 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT----GNGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 437 ~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~----~~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
|.+++...|+|+. |.+ +.+...|+-=+... ....++.+.|.+..+-+|. +.+|.|.-|
T Consensus 240 ~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 240 YRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp ESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 9999888887664 433 33445554322111 1335788998766555544 456666544
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.37 E-value=0.013 Score=37.68 Aligned_cols=31 Identities=26% Similarity=0.602 Sum_probs=28.1
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 336 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 336 ~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
...|.+++|+|...+||.++.+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3468999999999999999999999999983
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.34 E-value=0.28 Score=47.97 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=77.9
Q ss_pred ceeEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cce--eeecccCCCCEEEEEEcCCCCCCCCCCCcEE
Q 010777 338 EVNCVKWDPTGSLLASCS-----------DDV-TAKIWNMKQ--DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 401 (501)
Q Consensus 338 ~v~~v~~~~~~~~l~s~s-----------~Dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~ 401 (501)
....|+|.++|+++++.. ..+ .|.+++-.. ++. ...+.........+++.+++ +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G----------l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG----------V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC----------E
Confidence 355788888888877653 223 666665332 221 12222222334566766665 2
Q ss_pred EEEEeCCCeEEEEeCCC-------CeEEEE-eeC----CCCCeEEEEECCCCCEEEEEeCC-------------------
Q 010777 402 LASASFDSTVKLWDVEL-------GKLLYS-LNG----HREPVYSLAFSPTGEYLASGSLD------------------- 450 (501)
Q Consensus 402 l~sgs~dg~i~iwd~~~-------~~~~~~-~~~----h~~~v~~l~~spdg~~lasgs~D------------------- 450 (501)
+++ +.....++.|... .+.+.. +.. +....+.++|.|||.+.++-+..
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 333 3333333445421 122222 222 12447789999999877654421
Q ss_pred CcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECCC
Q 010777 451 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH 492 (501)
Q Consensus 451 g~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d~ 492 (501)
|.|.-++..++++.....+....+.++|+|+|+.+++-..++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 456666666555433333444468999999999887654333
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.30 E-value=1.4 Score=47.24 Aligned_cols=201 Identities=15% Similarity=0.237 Sum_probs=108.8
Q ss_pred CCEEEEEecCCeEEEEeCCCcceeEeeeeccCCe--------EEEec-----------------CCCceEEEecCCCeEE
Q 010777 265 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT--------LDVDW-----------------RNNVSFATSSTDNMIY 319 (501)
Q Consensus 265 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~-----------------~~~~~~~~~~~d~~i~ 319 (501)
+..|+.++.++.|.-.|..+++.+-.+....... ..+.+ ....+++.++.|+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4567777777778888887777655544322110 00111 1223566777899999
Q ss_pred EEEcCCCcceeeecCCCCcee-------------EEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCceeeec
Q 010777 320 VCKIGENRPIKTFAGHQGEVN-------------CVKWDP--TGSLLASCSD----------DVTAKIWNMKQDKYVHDL 374 (501)
Q Consensus 320 ~~~~~~~~~~~~~~~h~~~v~-------------~v~~~~--~~~~l~s~s~----------Dg~i~iwd~~~~~~~~~~ 374 (501)
-.|..+++.+-.|.. .+.|. .+.-.| .+..++.|+. +|.|+-+|.++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999988888766532 22110 011111 1334555542 688999999999887554
Q ss_pred ccC---------CCCEEE---------EEEc--------CCCCCCCC--CCCcEEEEEEeCCCeEEEEeCCCCeEEEEee
Q 010777 375 REH---------SKEIYT---------IRWS--------PTGSGTNN--PNQQLILASASFDSTVKLWDVELGKLLYSLN 426 (501)
Q Consensus 375 ~~~---------~~~v~~---------i~~~--------p~g~~~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 426 (501)
..- .+..+. .++. |.|..... .... .....-..+.|.-.|.++|+....++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r-~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDR-TPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCcc-ccCcccccceEEEEeCCCCceEEEec
Confidence 311 011110 0111 11110000 0000 00001234567778899999988775
Q ss_pred CCCCCeEE---------EEECC-CCC---EEEEEeCCCcEEEEeCCCCeeEEEE
Q 010777 427 GHREPVYS---------LAFSP-TGE---YLASGSLDKSMHIWSLKEGKIVKTY 467 (501)
Q Consensus 427 ~h~~~v~~---------l~~sp-dg~---~lasgs~Dg~i~iw~~~~~~~~~~~ 467 (501)
.....+++ +.+.- +|+ .++.++.+|.++++|.++|+.+...
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 42111111 12222 563 7889999999999999999987654
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.09 E-value=0.3 Score=48.78 Aligned_cols=148 Identities=18% Similarity=0.346 Sum_probs=88.7
Q ss_pred CceeEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEE
Q 010777 337 GEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 413 (501)
Q Consensus 337 ~~v~~v~~~~~~~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 413 (501)
.++..++|. ||+.++-.. ..|.+++=|. +.+ +.-..|+.+.|+|-+.... . .|++..+...|.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~----p-aLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADT----P-ALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCC----C-ceEEEeccceEEE
Confidence 468889997 666554321 2333333221 112 2234688999999865321 1 3445567889999
Q ss_pred EeCC-----CCeEEEEeeCCC---CCe--EEEEECCCCCEEEEEeCCCcEEEEeCCC--CeeEEEEecCCCEEEEEECCC
Q 010777 414 WDVE-----LGKLLYSLNGHR---EPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGGIFEVCWNKE 481 (501)
Q Consensus 414 wd~~-----~~~~~~~~~~h~---~~v--~~l~~spdg~~lasgs~Dg~i~iw~~~~--~~~~~~~~~~~~i~~~~ws~~ 481 (501)
|-+. .++.+.....+- -+| ..+.|||....|+.-.....-.+++++. ..+...+.+.+-|.+.||.+|
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 9864 233333322221 122 3468999999887765554445556543 233444566777999999999
Q ss_pred CCEEEEEECCCeE--EEEE
Q 010777 482 GDKIAACFANHTV--CVLD 498 (501)
Q Consensus 482 g~~la~~~~d~~v--~v~~ 498 (501)
|++|+.+-.+ .+ ++||
T Consensus 167 G~RLVVAvGS-sLHSyiWd 184 (671)
T PF15390_consen 167 GQRLVVAVGS-SLHSYIWD 184 (671)
T ss_pred CCEEEEEeCC-eEEEEEec
Confidence 9999888665 44 5554
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.02 E-value=0.66 Score=48.05 Aligned_cols=183 Identities=16% Similarity=0.217 Sum_probs=93.4
Q ss_pred CCEEEEEecC------CeEEEEeCCCcceeEeeeeccC-CeEEEecCCCceEEEecCC-C-----eEEEEEcCCCc--ce
Q 010777 265 GDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-N-----MIYVCKIGENR--PI 329 (501)
Q Consensus 265 ~~~l~s~s~D------~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-~-----~i~~~~~~~~~--~~ 329 (501)
+..++.|+.+ .++..+|+.++.|......... ...++...++..+++|+.+ + .+..||...++ .+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 3445556655 4688899988877654433221 2334445566778888877 3 45556655443 11
Q ss_pred eeecCCCCceeEEEEcCCCCEEEEEeCCCe-----EEEEeCCCCcee--eecccCCCCEEEEEEc-CCCCCCCCCCCcEE
Q 010777 330 KTFAGHQGEVNCVKWDPTGSLLASCSDDVT-----AKIWNMKQDKYV--HDLREHSKEIYTIRWS-PTGSGTNNPNQQLI 401 (501)
Q Consensus 330 ~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~-----i~iwd~~~~~~~--~~~~~~~~~v~~i~~~-p~g~~~~~~~~~~~ 401 (501)
..+.......-.. .-+|.+.|.||.||. +..||..+.+.- ..+.. .....+.. -.| .+
T Consensus 365 a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~~~~g---------~i 430 (571)
T KOG4441|consen 365 APMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVAVLGG---------KL 430 (571)
T ss_pred CCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEEEECC---------EE
Confidence 1111111111111 126888999999974 677887665432 22211 11111111 122 24
Q ss_pred EEEEeCCC------eEEEEeCCCCeE--EEEeeCCCCCeEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCee
Q 010777 402 LASASFDS------TVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGKI 463 (501)
Q Consensus 402 l~sgs~dg------~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg~~lasgs~Dg-----~i~iw~~~~~~~ 463 (501)
.+.|+.++ ++..||..+++= +..+..-+.......+ ++...|.||.|+ +|..||..+.+-
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCce
Confidence 45566443 466677665432 2222211122222222 567788888876 377788776543
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.97 E-value=0.24 Score=50.90 Aligned_cols=92 Identities=20% Similarity=0.380 Sum_probs=63.4
Q ss_pred EeCCCeEEEEeCCCCeEEEEee-CCCCCeEEEEEC--CCCCEEEEEeCCCcEEEEeCCC---------CeeEEEEe----
Q 010777 405 ASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFS--PTGEYLASGSLDKSMHIWSLKE---------GKIVKTYT---- 468 (501)
Q Consensus 405 gs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s--pdg~~lasgs~Dg~i~iw~~~~---------~~~~~~~~---- 468 (501)
-+....+.|||.+.+..-++-. ...+.|.++.|. |+|+.+++.|....|.+|.-.. ...++.+.
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~ 126 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH 126 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence 3345579999999887655432 346789999884 7899999999999999996421 12233321
Q ss_pred cCCCEEEEEECCCCCEEEEEECCCeEEEEE
Q 010777 469 GNGGIFEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 469 ~~~~i~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
....|.+.+|-++|..+++++ + .+.|++
T Consensus 127 T~h~Igds~Wl~~G~LvV~sG-N-qlfv~d 154 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGSG-N-QLFVFD 154 (631)
T ss_pred CCCCccceeEecCCeEEEEeC-C-EEEEEC
Confidence 124688999999997666553 3 466664
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.57 E-value=1.8 Score=39.41 Aligned_cols=179 Identities=13% Similarity=0.115 Sum_probs=98.9
Q ss_pred eeEEEECCCCCEEEEEECCC--cEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCC
Q 010777 156 VCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 233 (501)
Q Consensus 156 V~~~~~sp~~~~l~sgs~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 233 (501)
..++.|..+|.++-|.|.-| .|+.+|+.+++... ...+....-+ -.++... ++...-.-.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~-----------~~~l~~~~Fg-----EGit~~~-d~l~qLTWk~ 109 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ-----------SVPLPPRYFG-----EGITILG-DKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE-----------EEE-TTT--E-----EEEEEET-TEEEEEESSS
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE-----------EEECCccccc-----eeEEEEC-CEEEEEEecC
Confidence 45788878888888888655 79999998875321 1111111100 0111111 2333334557
Q ss_pred CeEEEEECCCc-eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeecc--C---CeEEEecCCCc
Q 010777 234 GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS--G---PTLDVDWRNNV 307 (501)
Q Consensus 234 g~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~--~---~~~~~~~~~~~ 307 (501)
+...+||...- ...++. ..+.=++|+ .+++.|+.......+.++|+.+.+....+.... . ..+.+.|.+..
T Consensus 110 ~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~ 186 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGK 186 (264)
T ss_dssp SEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTE
T ss_pred CeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCE
Confidence 88899998653 333332 334558887 456677777667789999998877666554321 1 23445565555
Q ss_pred eEEEecCCCeEEEEEcCCCcceeeec------------CC---CCceeEEEEcCCCCEE-EEE
Q 010777 308 SFATSSTDNMIYVCKIGENRPIKTFA------------GH---QGEVNCVKWDPTGSLL-ASC 354 (501)
Q Consensus 308 ~~~~~~~d~~i~~~~~~~~~~~~~~~------------~h---~~~v~~v~~~~~~~~l-~s~ 354 (501)
.++-.=....|...|..+++.+..+. .+ ..-.+.|||.|....| +||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555555566666666666544331 01 3457899999876654 554
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.39 E-value=0.06 Score=46.96 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=62.3
Q ss_pred CCEEEEEecCCeEEEEeCCCcceeE-eeeeccCCeEEEec--CCCceEEEecCCCeEEEEEcCCCcceeeecCCC-Ccee
Q 010777 265 GDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVN 340 (501)
Q Consensus 265 ~~~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~ 340 (501)
+..++.|+.+|.|.+|+......+. .+.....++.+.-. .......++..++.|+.|.+...+.+-...+|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 3468899999999999876221111 11111112222211 223356778899999999998888776666666 4454
Q ss_pred EEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 010777 341 CVKWDPTGSLLASC--SDDVTAKIWNMK 366 (501)
Q Consensus 341 ~v~~~~~~~~l~s~--s~Dg~i~iwd~~ 366 (501)
.+..+..+++++.. |.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 55555555666666 666677777654
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.20 E-value=0.019 Score=59.33 Aligned_cols=113 Identities=18% Similarity=0.263 Sum_probs=63.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCC-----CCceeeecccCCC-CEEEEEEcCCCCC-CCCCCCcEEEEEEeCCCeEEEEeC
Q 010777 344 WDPTGSLLASCSDDVTAKIWNMK-----QDKYVHDLREHSK-EIYTIRWSPTGSG-TNNPNQQLILASASFDSTVKLWDV 416 (501)
Q Consensus 344 ~~~~~~~l~s~s~Dg~i~iwd~~-----~~~~~~~~~~~~~-~v~~i~~~p~g~~-~~~~~~~~~l~sgs~dg~i~iwd~ 416 (501)
.+|||+.||+.+.||.+++|.+. ..++++..+.|.+ +-.|..+..+... ...+...+++-+...+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 79999999999999999888642 3345556666653 2222222222111 111122234444455677999987
Q ss_pred CCCeEEEEeeCCCCCeEEEEECCCCC------------EEEEEeCCCcEEEEeCC
Q 010777 417 ELGKLLYSLNGHREPVYSLAFSPTGE------------YLASGSLDKSMHIWSLK 459 (501)
Q Consensus 417 ~~~~~~~~~~~h~~~v~~l~~spdg~------------~lasgs~Dg~i~iw~~~ 459 (501)
...+|+.. -.-..|..|. -++|. .+++-+.++.|++|.-+
T Consensus 323 a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhhhh--hcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 76666521 1123344444 33332 23456678889999644
No 401
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=2.6 Score=38.41 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=83.1
Q ss_pred EECCCCCEEEEEeCC-----CeEEEEECCCc--eeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEE--------eCC
Q 010777 219 DWNGEGTLLATGSYD-----GQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW--------DVK 283 (501)
Q Consensus 219 ~~s~~~~~l~sg~~d-----g~i~iw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iw--------d~~ 283 (501)
.||+||.+|+..-.| |.|=|||.... ....+..|.-.-..+.|.+||..++.+. |-|... |+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 489999999886554 78899997643 3346777776668889999999887764 334433 222
Q ss_pred CcceeEeeee-ccCCeEEE-ecC-----CCceEEEecCCCeEEE-EEcC--------------CCcceeeec-------C
Q 010777 284 TEEWKQQFEF-HSGPTLDV-DWR-----NNVSFATSSTDNMIYV-CKIG--------------ENRPIKTFA-------G 334 (501)
Q Consensus 284 ~~~~~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~d~~i~~-~~~~--------------~~~~~~~~~-------~ 334 (501)
+++..-.+.. ..+..+.- ... ...+-+.-+.||+|+. +... .++++.-+. .
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 2222111111 11111000 000 1112233344555543 2221 112222111 1
Q ss_pred CCCceeEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeee
Q 010777 335 HQGEVNCVKWDPTGSLLASCSDD-VTAKIWNMKQDKYVHD 373 (501)
Q Consensus 335 h~~~v~~v~~~~~~~~l~s~s~D-g~i~iwd~~~~~~~~~ 373 (501)
-...|-+|+.+.+..+++..+-. +...+||..++..+..
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 23456788888777776655554 4678999999987654
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.6 Score=50.17 Aligned_cols=141 Identities=12% Similarity=0.051 Sum_probs=85.0
Q ss_pred ceeEEEEcCCCCEEE--EEeCCCeEEEEeCCCCcee--------e---ecccCCCCEEEEEEcCCCCCCCCCCCcEEEEE
Q 010777 338 EVNCVKWDPTGSLLA--SCSDDVTAKIWNMKQDKYV--------H---DLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 404 (501)
Q Consensus 338 ~v~~v~~~~~~~~l~--s~s~Dg~i~iwd~~~~~~~--------~---~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~s 404 (501)
.+..+...+|+...+ ..+++-.|..||+++-..- . ..........++.|.|.-. ...+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--------~n~av 173 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--------LNSAV 173 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--------chhhh
Confidence 344555666765533 3344446888898643211 0 1111122334556666532 24566
Q ss_pred EeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec-----CCCEEEEEEC
Q 010777 405 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWN 479 (501)
Q Consensus 405 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~ws 479 (501)
+..|+.|++.-+........--.....+++++|+|-|+.++.|-..|++.-|... +++...++. +..|.+|+|-
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEe
Confidence 7788888887665322211111244568999999999999999999999999754 333333322 4578999998
Q ss_pred CCCCEEEE
Q 010777 480 KEGDKIAA 487 (501)
Q Consensus 480 ~~g~~la~ 487 (501)
..-.+|++
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77666654
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.84 E-value=3.5 Score=38.72 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=55.1
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEE
Q 010777 376 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 455 (501)
Q Consensus 376 ~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~i 455 (501)
...+.+..+.-+++|. ++++++.-....-|+--...-...-..-...|.++.|+|++.+.+.+ ..|.|++
T Consensus 142 ~~~gs~~~~~r~~dG~---------~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR---------YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TTS----------EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred CCcceeEeEEECCCCc---------EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEE
Confidence 3446677787788886 66666555555677754221111122245789999999998876654 7888888
Q ss_pred EeC-CCCee-EEE-Ee---cCCCEEEEEECCCCCEEEEEECCCeEE
Q 010777 456 WSL-KEGKI-VKT-YT---GNGGIFEVCWNKEGDKIAACFANHTVC 495 (501)
Q Consensus 456 w~~-~~~~~-~~~-~~---~~~~i~~~~ws~~g~~la~~~~d~~v~ 495 (501)
=+. ..+.. ... .+ ..-.+.+++|.+++...|+|+ +|.+.
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence 762 22111 111 11 122489999999977777554 44443
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.65 E-value=4.4 Score=38.94 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=43.3
Q ss_pred EEeeCCCCCeEEEEECCC-------CCEEEEEeCCCcEEEEeCCCCe-eE--EEEe-cCC-CEEEEEECCCCCEEEEEEC
Q 010777 423 YSLNGHREPVYSLAFSPT-------GEYLASGSLDKSMHIWSLKEGK-IV--KTYT-GNG-GIFEVCWNKEGDKIAACFA 490 (501)
Q Consensus 423 ~~~~~h~~~v~~l~~spd-------g~~lasgs~Dg~i~iw~~~~~~-~~--~~~~-~~~-~i~~~~ws~~g~~la~~~~ 490 (501)
..+..| ..++.+.|-+. |.+|++.-..+.|....+..+. +. ..+- ... .+.++++.|||.+.++-..
T Consensus 247 ~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 247 FAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp EEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred eeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 334434 45667777543 4456555556788888876443 22 1222 223 6899999999999888888
Q ss_pred CCeEE
Q 010777 491 NHTVC 495 (501)
Q Consensus 491 d~~v~ 495 (501)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88864
No 405
>PHA03098 kelch-like protein; Provisional
Probab=94.54 E-value=2.2 Score=44.14 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=42.5
Q ss_pred eEEEEeCCCcceeEeeeeccC-CeEEEecCCCceEEEecCC-----CeEEEEEcCCCcce--eeecCCCCceeEEEEcCC
Q 010777 276 TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPT 347 (501)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~--~~~~~h~~~v~~v~~~~~ 347 (501)
.+..||+.+..|...-..... .-.++...++..++.|+.+ ..+..|+..+++=. ..+....... +++ .-+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EEC
Confidence 567888888777543211110 0111222345556666544 23555665443211 1111001111 122 235
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCce
Q 010777 348 GSLLASCSDD------VTAKIWNMKQDKY 370 (501)
Q Consensus 348 ~~~l~s~s~D------g~i~iwd~~~~~~ 370 (501)
+++++.||.+ ..+..||..+.+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 6777777732 3577888776543
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.40 E-value=8.3 Score=41.08 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=52.1
Q ss_pred CEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeee-c
Q 010777 255 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-A 333 (501)
Q Consensus 255 ~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~ 333 (501)
.|..|.++|+|.+|+..|..+.+.+.=++.......+......+.+- .+.++. ..| .
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Cr------------------t~~v~~----~~~~~ 143 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCR------------------TVPVDE----RFFTS 143 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEE------------------EEEech----hhccC
Confidence 57888899999998888876544443222111011111111111111 111111 011 1
Q ss_pred CCCCceeEEEEcCC---CCEEEEEeCCCeEEEEeCCC
Q 010777 334 GHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 334 ~h~~~v~~v~~~~~---~~~l~s~s~Dg~i~iwd~~~ 367 (501)
.+...|..+.|||. +.+|+.-..|+++|+||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 33457889999997 47888899999999999864
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.34 E-value=5.2 Score=38.45 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=34.1
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEE---E-eeCCCCCeEEEEECCCCCEEEEEeCCCcEE
Q 010777 401 ILASASFDSTVKLWDVELGKLLY---S-LNGHREPVYSLAFSPTGEYLASGSLDKSMH 454 (501)
Q Consensus 401 ~l~sgs~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~spdg~~lasgs~Dg~i~ 454 (501)
++++.-..+.|....+..+..+. . +......+..|++.|||.++++-..+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 44444445677777776443322 1 233444799999999999888877888764
No 408
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.28 E-value=0.18 Score=31.41 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCeEEEEECCCC---CEEEEEeCCCcEEEEeCCC
Q 010777 430 EPVYSLAFSPTG---EYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 430 ~~v~~l~~spdg---~~lasgs~Dg~i~iw~~~~ 460 (501)
++|.++.|||.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5899988999999999985
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.01 E-value=10 Score=40.73 Aligned_cols=151 Identities=15% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEE-EEE--EcCCCC--CCCCC--CCcEEEEEEeC----------CCe
Q 010777 348 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-TIR--WSPTGS--GTNNP--NQQLILASASF----------DST 410 (501)
Q Consensus 348 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~--~~p~g~--~~~~~--~~~~~l~sgs~----------dg~ 410 (501)
+..|+.++.|+.+.-.|.++++.+..+... +.+. ... -.+.+. ....| ... .++.|+. +|.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcE
Confidence 347778889999999999999887665321 1110 000 001000 00000 011 2334432 688
Q ss_pred EEEEeCCCCeEEEEeeCC---------C--------CCe-EEEEECCCCCEEEEEe------------------CCCcEE
Q 010777 411 VKLWDVELGKLLYSLNGH---------R--------EPV-YSLAFSPTGEYLASGS------------------LDKSMH 454 (501)
Q Consensus 411 i~iwd~~~~~~~~~~~~h---------~--------~~v-~~l~~spdg~~lasgs------------------~Dg~i~ 454 (501)
|+-+|.++|+.++.+..- . ..+ ..+++.|....+..+. ..+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999999876421 0 011 2244555443333211 235678
Q ss_pred EEeCCCCeeEEEEec-CCCEE---------EEEECC-CCC---EEEEEECCCeEEEEEee
Q 010777 455 IWSLKEGKIVKTYTG-NGGIF---------EVCWNK-EGD---KIAACFANHTVCVLDFR 500 (501)
Q Consensus 455 iw~~~~~~~~~~~~~-~~~i~---------~~~ws~-~g~---~la~~~~d~~v~v~~~~ 500 (501)
-.|..+|++...++. +..++ -+.+.. +|+ .++.+..+|.+.++|-+
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 888999998877754 22221 122333 664 78889999999999853
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=0.31 Score=52.27 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=90.5
Q ss_pred cceeEEEECCCCCE--EEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCC-CEEEEE
Q 010777 154 SEVCACAWSPAGSL--LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATG 230 (501)
Q Consensus 154 ~~V~~~~~sp~~~~--l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~sg 230 (501)
-+|..+..++|++. ++..+.+-.|..||+.+-......+..++.. + ........-+.++.|+|.- ...+..
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~----s--~ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKN----S--ATSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccc----c--cchhccccccccccccCCccchhhhh
Confidence 35666667778664 3445555678899986533211111111100 0 0011122346788898853 345667
Q ss_pred eCCCeEEEEECCCcee-EeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeee----ccCCeEEEecCC
Q 010777 231 SYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF----HSGPTLDVDWRN 305 (501)
Q Consensus 231 ~~dg~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~ 305 (501)
..|+.|++..+..... +.--..+..+++++|+|.|.+++.|-..|++..|-..-. ....+.. ....+.++.|..
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEec
Confidence 7889998887643211 111134567899999999999999999999999976432 2222211 135678899987
Q ss_pred CceEEEe
Q 010777 306 NVSFATS 312 (501)
Q Consensus 306 ~~~~~~~ 312 (501)
...|+..
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 7766544
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.97 E-value=2.9 Score=41.23 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=84.0
Q ss_pred CCCEE-EEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEE
Q 010777 347 TGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYS 424 (501)
Q Consensus 347 ~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~ 424 (501)
+..+| ..|+.-..+.-.|+..|+.+.+...|... -+.|.|..........+. |+ |-.+..|.=.|.+. |..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqt-lv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQT-LV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccce-EE-eecccceEEecccccCCceee
Confidence 34443 34555556666788888888877766654 456677654322222222 33 44455554455542 322221
Q ss_pred eeCCCCCeEEEEECC----CCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCEEEEEECCCCCEEEEEECCCeEEEEEe
Q 010777 425 LNGHREPVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 499 (501)
Q Consensus 425 ~~~h~~~v~~l~~sp----dg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~-~~i~~~~ws~~g~~la~~~~d~~v~v~~~ 499 (501)
.. ...-++--.||. ...|+|.||..|-|++||.-.-..-..+++- ..|-.+..+.+|+++.+.+.+ .+-+-|+
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 11 112222223333 3458999999999999996543333334443 358889999999988776655 4555554
Q ss_pred e
Q 010777 500 R 500 (501)
Q Consensus 500 ~ 500 (501)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.70 E-value=4.5 Score=39.53 Aligned_cols=101 Identities=14% Similarity=0.236 Sum_probs=53.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----c---eeeeccc----CCCCEEEEEEcCCCCCCCCCCCcEEEEEE
Q 010777 338 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----K---YVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASA 405 (501)
Q Consensus 338 ~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~-----~---~~~~~~~----~~~~v~~i~~~p~g~~~~~~~~~~~l~sg 405 (501)
....+++.++| ++++ +.....++.|.... + .+..+.. +......++|.|+|. ++++.|
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--------LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--------LYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--------EEEecc
Confidence 45678888888 5554 33333334344221 1 1112222 123456788888875 345444
Q ss_pred eC------------------CCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeC
Q 010777 406 SF------------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 449 (501)
Q Consensus 406 s~------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~ 449 (501)
+. .|.|.-++...++......++ ...+.++|+|+|.++++-..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccC
Confidence 32 134555555544432222333 33478999999998876443
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.52 E-value=0.52 Score=42.13 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=48.5
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCeeEEEE---------------ecCCCEEEEEECCCCCEEEEEECCCeEEEEEeeC
Q 010777 437 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY---------------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 501 (501)
Q Consensus 437 ~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~---------------~~~~~i~~~~ws~~g~~la~~~~d~~v~v~~~~~ 501 (501)
+..++.+|++-+.+|.+++||+.+++.+... .....|..+..+..|.-|++- .||..++|+..|
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 4457889999999999999999998764322 123458889999999876654 467889998654
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.50 E-value=6 Score=36.30 Aligned_cols=139 Identities=15% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCeEEEEECCCCCEEEEEe---CCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEe-CCCccee
Q 010777 213 KDVTTLDWNGEGTLLATGS---YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD-VKTEEWK 288 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~---~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd-~~~~~~~ 288 (501)
..+.+.++++++..++... ....++++...+.....+.+ ..+..-.|.+++...+....+...+++. ..++...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688899999998776655 33456666555444433332 2667778888876655555555555552 2221110
Q ss_pred EeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEe---CCCeEEEEeC
Q 010777 289 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNM 365 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s---~Dg~i~iwd~ 365 (501)
. ..++ ...-.+.|..+.+||||..+|.-. .++.|.+--+
T Consensus 102 ~---------~~v~-----------------------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 P---------VEVD-----------------------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred e---------EEec-----------------------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 0 0000 000111799999999999876554 3466666533
Q ss_pred C---CC--ce----eeecccCCCCEEEEEEcCCCC
Q 010777 366 K---QD--KY----VHDLREHSKEIYTIRWSPTGS 391 (501)
Q Consensus 366 ~---~~--~~----~~~~~~~~~~v~~i~~~p~g~ 391 (501)
. .+ .. +.........+..+.|.+++.
T Consensus 144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred EeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 2 12 11 111122345788999998875
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.49 E-value=2.6 Score=42.43 Aligned_cols=148 Identities=16% Similarity=0.311 Sum_probs=78.9
Q ss_pred CCeEEEEECCCCCEEEEEe--CCCeEEEEECCCceeEeecCCCCCEEEEEecCCC----CEEEEEecCCeEEEEeCC---
Q 010777 213 KDVTTLDWNGEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG----DYLLTGSCDKTAIVWDVK--- 283 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~--~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~D~~i~iwd~~--- 283 (501)
.+|..++|....+.+++.- .+|.+++=|. ..-+.-.-|+++.|.|-+ ..|++....+.|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 4688899985444555532 2233322221 122334568999999853 367777778999999875
Q ss_pred --CcceeEeeeeccC---Ce--EEEecCCCceE--EEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE
Q 010777 284 --TEEWKQQFEFHSG---PT--LDVDWRNNVSF--ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 354 (501)
Q Consensus 284 --~~~~~~~~~~~~~---~~--~~~~~~~~~~~--~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 354 (501)
+.++.....++-. |+ ...-|++...+ +....|-.|+.---..+..++.=-...+.|.|.+|.+||+.|+.+
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence 2233222221111 11 12346654433 334444444321111222222222346789999999999876544
Q ss_pred -eCCCeEEEEeCC
Q 010777 355 -SDDVTAKIWNMK 366 (501)
Q Consensus 355 -s~Dg~i~iwd~~ 366 (501)
+..=.-.|||-.
T Consensus 174 vGSsLHSyiWd~~ 186 (671)
T PF15390_consen 174 VGSSLHSYIWDSA 186 (671)
T ss_pred eCCeEEEEEecCc
Confidence 333356788854
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.35 E-value=9 Score=37.85 Aligned_cols=263 Identities=14% Similarity=0.117 Sum_probs=131.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCce-----eEeecCCCCCEEEEEecC----CCCEEEEEecCCeEEEEeCCC--cc-----
Q 010777 223 EGTLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNK----KGDYLLTGSCDKTAIVWDVKT--EE----- 286 (501)
Q Consensus 223 ~~~~l~sg~~dg~i~iw~~~~~~-----~~~~~~h~~~V~~l~~~~----~~~~l~s~s~D~~i~iwd~~~--~~----- 286 (501)
+...++.|+..|.++||+..... ...-..-+.||..+..-+ .....++.=.-+.+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999975321 111122456887776432 122233334567788887632 11
Q ss_pred -e-eEeeeeccCC-----eEEEecC---CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC
Q 010777 287 -W-KQQFEFHSGP-----TLDVDWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 356 (501)
Q Consensus 287 -~-~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~ 356 (501)
+ ......|.-+ .....|. ....+..-+.||.+.+++-..-.-...+.+ .--.-.+.|.+.-..|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1 1111112111 1112232 135567789999999998654332222222 112235778888888999999
Q ss_pred CCeEEEEeCCCCcee-----------------eecc-----cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 010777 357 DVTAKIWNMKQDKYV-----------------HDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 414 (501)
Q Consensus 357 Dg~i~iwd~~~~~~~-----------------~~~~-----~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 414 (501)
+..+..|....-... ..+. .-...+..+....... ....+++-| ..++.+.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~-----~~~~IvvLg--er~Lf~l 267 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS-----SESDIVVLG--ERSLFCL 267 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC-----CCceEEEEe--cceEEEE
Confidence 999998864210000 0000 0011222222111100 111233333 2445555
Q ss_pred eCCCCeEEEEeeCCCCCeEEEEE------CCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEecCCCEEEEE---ECCCCCE
Q 010777 415 DVELGKLLYSLNGHREPVYSLAF------SPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC---WNKEGDK 484 (501)
Q Consensus 415 d~~~~~~~~~~~~h~~~v~~l~~------spdg-~~lasgs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~---ws~~g~~ 484 (501)
+- +|...+..+-.-.+..-..| .|+. ..++.++.++++.||. +.++++.......+.++. +..-...
T Consensus 268 ~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~ 344 (418)
T PF14727_consen 268 KD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGL 344 (418)
T ss_pred cC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCce
Confidence 54 35544443321122222222 2221 2588899999999995 456666554433332332 3333347
Q ss_pred EEEEECCCeEEE
Q 010777 485 IAACFANHTVCV 496 (501)
Q Consensus 485 la~~~~d~~v~v 496 (501)
|++-+.+|.|.|
T Consensus 345 IV~Ls~~G~L~v 356 (418)
T PF14727_consen 345 IVSLSDEGQLSV 356 (418)
T ss_pred EEEEcCCCcEEE
Confidence 777777887765
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.16 E-value=6.7 Score=35.87 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=87.1
Q ss_pred EEEEcCCCC-EEEEEeCCCe-EEEEeCCCCceeeecccCCCCEE--EEEEcCCCCCCCCCCCcEEEEEEe----CCCeEE
Q 010777 341 CVKWDPTGS-LLASCSDDVT-AKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPNQQLILASAS----FDSTVK 412 (501)
Q Consensus 341 ~v~~~~~~~-~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~v~--~i~~~p~g~~~~~~~~~~~l~sgs----~dg~i~ 412 (501)
.++++|..+ -++.+-.-|+ ..++|.........+....+.-+ .-.|+|+|. ++.+|-. .-|.|=
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--------~LYATEndfd~~rGViG 143 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--------LLYATENDFDPNRGVIG 143 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--------EEEeecCCCCCCCceEE
Confidence 477787654 3666666665 46788877665554433222211 125677775 3333321 136799
Q ss_pred EEeCCCC-eEEEEeeCCCCCeEEEEECCCCCEEEEEeC------C------------CcEEEEeCCCCeeEEEEec----
Q 010777 413 LWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSL------D------------KSMHIWSLKEGKIVKTYTG---- 469 (501)
Q Consensus 413 iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~lasgs~------D------------g~i~iw~~~~~~~~~~~~~---- 469 (501)
|||.+.+ +.+.++..|.-.-..+.|.+||+.|+.+.. | -++.+-+..+|.++....-
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 9998754 456678888777789999999999887643 1 1344445555655432211
Q ss_pred -CCCEEEEEECCCCCEEEEEE
Q 010777 470 -NGGIFEVCWNKEGDKIAACF 489 (501)
Q Consensus 470 -~~~i~~~~ws~~g~~la~~~ 489 (501)
.-.+..++..+||..++.|=
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEE
Confidence 22577888999998887763
No 418
>PHA03098 kelch-like protein; Provisional
Probab=93.08 E-value=4.8 Score=41.69 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=31.4
Q ss_pred CCCEEEEEeCCC--------cEEEEeCCCCeeEEE--EecCC-CEEEEEECCCCCEEEEEECC-----CeEEEEEee
Q 010777 440 TGEYLASGSLDK--------SMHIWSLKEGKIVKT--YTGNG-GIFEVCWNKEGDKIAACFAN-----HTVCVLDFR 500 (501)
Q Consensus 440 dg~~lasgs~Dg--------~i~iw~~~~~~~~~~--~~~~~-~i~~~~ws~~g~~la~~~~d-----~~v~v~~~~ 500 (501)
++..++.||.+. .+.+||..+++-... ..... ....+.. +++.++.|+.+ ..|.+||..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence 556667776432 388899877643221 11111 1112222 66777777654 367777754
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=92.80 E-value=8.2 Score=39.30 Aligned_cols=103 Identities=11% Similarity=0.054 Sum_probs=49.0
Q ss_pred CEEEEEecC-----CeEEEEeCCCcceeEeeeeccCC-eEEEecCCCceEEEecCC--CeEEEEEcCCCc--ceeeecCC
Q 010777 266 DYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD--NMIYVCKIGENR--PIKTFAGH 335 (501)
Q Consensus 266 ~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~--~~~~~~~h 335 (501)
..++.|+.+ .++..||+.+..|...-...... .......++..++.|+.+ ..+..|+...+. .+..+...
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~ 352 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP 352 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC
Confidence 344555543 35677888887765533221111 111222345556666543 345566654321 11111111
Q ss_pred CCceeEEEEcCCCCEEEEEeCCC---eEEEEeCCCCce
Q 010777 336 QGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKY 370 (501)
Q Consensus 336 ~~~v~~v~~~~~~~~l~s~s~Dg---~i~iwd~~~~~~ 370 (501)
......+. -+|++.+.||.++ .+..||..+...
T Consensus 353 r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 353 RCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 11111222 3677778887654 466788765543
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.76 E-value=10 Score=36.76 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=46.9
Q ss_pred EEEcCCCCEEEEE-----eCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC--------
Q 010777 342 VKWDPTGSLLASC-----SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------- 408 (501)
Q Consensus 342 v~~~~~~~~l~s~-----s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d-------- 408 (501)
=-|.|||..|.-- +.+..|.-+|..++........ .....+--+++|. +++.=+.|
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~---------L~vGDG~d~p~~v~~~ 311 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGK---------LFVGDGGDAPVDVADA 311 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSS---------EEEEEE----------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCC---------EEEecCCCCCcccccc
Confidence 3578998765432 2244566677777654322221 2333444456664 22211111
Q ss_pred --------CeEEEEeCCCCeEEEE---------eeCCCC-CeEEEEECCCCCEEE-EEeCCCcEEEEeC
Q 010777 409 --------STVKLWDVELGKLLYS---------LNGHRE-PVYSLAFSPTGEYLA-SGSLDKSMHIWSL 458 (501)
Q Consensus 409 --------g~i~iwd~~~~~~~~~---------~~~h~~-~v~~l~~spdg~~la-sgs~Dg~i~iw~~ 458 (501)
-.|+++++..+....- +.++.. .=-...|||||++++ ++...|...||-+
T Consensus 312 ~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 312 GGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 2567788877664311 122211 123579999999876 4556777777643
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=14 Score=38.46 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC
Q 010777 232 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 284 (501)
Q Consensus 232 ~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~ 284 (501)
.--.|+|++..|.....+.-..+++.++.|+.+. .|+.-..+|++.+|++-.
T Consensus 62 a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 62 ARPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred cceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 3457899999888766554444478899999765 577778899999999754
No 422
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=3 Score=40.53 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=81.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCC---ceeEee-cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeE----eeee
Q 010777 222 GEGTLLATGSYDGQARIWSTNG---DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ----QFEF 293 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~----~~~~ 293 (501)
.|.+..+.+-..|.+.=|-+.+ +....+ ....++|.+++|++|.+.|+.--.+++|.+.+....+... ....
T Consensus 31 DDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~ 110 (657)
T KOG2377|consen 31 DDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT 110 (657)
T ss_pred ccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc
Confidence 3444444455556666665433 222222 2356799999999999999999999999999874333222 1222
Q ss_pred ccCCeEEEecCCCceEEEecCCCe-EEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEE
Q 010777 294 HSGPTLDVDWRNNVSFATSSTDNM-IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 354 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 354 (501)
....+..+.|..+..++.-.+.|. ++-++ .....++....|...|+=..|.++-+.+.-+
T Consensus 111 k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~-pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 111 KNANILGFCWTSSTEIAFITDQGIEFYQVL-PEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred CcceeEEEEEecCeeEEEEecCCeEEEEEc-hhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 334577888988777766665553 22222 2223344455677777777788877664433
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.64 E-value=16 Score=38.95 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=52.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEE-----CCC-------ceeEe-e--------cCCCCCEEEEEecCCC---CE
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWS-----TNG-------DLKCT-L--------SKHKGPIFSLKWNKKG---DY 267 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~-----~~~-------~~~~~-~--------~~h~~~V~~l~~~~~~---~~ 267 (501)
.-.|..+..|++|.+++..|..|.+.+.= ..+ ...|. + ..+...|..+.|||.+ ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 34688999999999999999877655431 111 11221 1 2344578999999974 78
Q ss_pred EEEEecCCeEEEEeCCC
Q 010777 268 LLTGSCDKTAIVWDVKT 284 (501)
Q Consensus 268 l~s~s~D~~i~iwd~~~ 284 (501)
|+.=..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 88888999999999964
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.47 E-value=12 Score=36.83 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=80.9
Q ss_pred EecCCCeEEEEEcCCC----cceeeecC---CC----CceeEEEEcCCCCEEEEE--eCC----CeEEEEeCCCCceeee
Q 010777 311 TSSTDNMIYVCKIGEN----RPIKTFAG---HQ----GEVNCVKWDPTGSLLASC--SDD----VTAKIWNMKQDKYVHD 373 (501)
Q Consensus 311 ~~~~d~~i~~~~~~~~----~~~~~~~~---h~----~~v~~v~~~~~~~~l~s~--s~D----g~i~iwd~~~~~~~~~ 373 (501)
-+-..+.|++.|+.+. +..+++.. +. .....+..-|+|..++|+ ..+ |-+.+.|-.+......
T Consensus 93 PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~ 172 (461)
T PF05694_consen 93 PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR 172 (461)
T ss_dssp EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE
T ss_pred eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce
Confidence 3345667888887632 22333321 10 122334455788887765 222 3567777665554443
Q ss_pred ccc---CCCCEEEEEEcCCCCCCCCCCCcEEEEEEe--------------------CCCeEEEEeCCCCeEEEEeeCCC-
Q 010777 374 LRE---HSKEIYTIRWSPTGSGTNNPNQQLILASAS--------------------FDSTVKLWDVELGKLLYSLNGHR- 429 (501)
Q Consensus 374 ~~~---~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs--------------------~dg~i~iwd~~~~~~~~~~~~h~- 429 (501)
... ...--+.+.|.|... +++|.. .-.++.+||+.+.+.++++.--.
T Consensus 173 We~~~~~~~~gYDfw~qpr~n---------vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 173 WEKDRGPQPFGYDFWYQPRHN---------VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp --SB-TT------EEEETTTT---------EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred eccCCCCCCCCCCeEEcCCCC---------EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 322 122345566666432 233322 34689999999999998886332
Q ss_pred -CCeEEEEECC--CCCEE-EEEeCCCcEEEEeC-CCCe----eEEEEec------------------CCCEEEEEECCCC
Q 010777 430 -EPVYSLAFSP--TGEYL-ASGSLDKSMHIWSL-KEGK----IVKTYTG------------------NGGIFEVCWNKEG 482 (501)
Q Consensus 430 -~~v~~l~~sp--dg~~l-asgs~Dg~i~iw~~-~~~~----~~~~~~~------------------~~~i~~~~ws~~g 482 (501)
.....|.|.. +..+= +.+-..++|..|-- .+++ .+-.+.. .+-|+++..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2356777754 44443 33334455555543 4442 1222211 1236899999999
Q ss_pred CEEE-EEECCCeEEEEEee
Q 010777 483 DKIA-ACFANHTVCVLDFR 500 (501)
Q Consensus 483 ~~la-~~~~d~~v~v~~~~ 500 (501)
++|. ++...|.|+.||+.
T Consensus 324 rfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -EEEEEETTTTEEEEEE-S
T ss_pred CEEEEEcccCCcEEEEecC
Confidence 9886 45679999999974
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.38 E-value=7.6 Score=34.47 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=77.0
Q ss_pred CceeEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC
Q 010777 337 GEVNCVKWDPTGSLLASCSDD---------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 407 (501)
Q Consensus 337 ~~v~~v~~~~~~~~l~s~s~D---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~ 407 (501)
...+.-..+|+|++++-.-.| |.++.|-.. ..+..+...-.--..++|+.+ ++.+...-+.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d--------~K~fY~iDsl 178 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSD--------AKKFYYIDSL 178 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCcccccccc--------CcEEEEEccC
Confidence 456667789999986433222 223333221 111111111122234555533 2345556677
Q ss_pred CCeEEEEe--CCCC-----eEEEEeeCC---CC-CeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCEEE
Q 010777 408 DSTVKLWD--VELG-----KLLYSLNGH---RE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFE 475 (501)
Q Consensus 408 dg~i~iwd--~~~~-----~~~~~~~~h---~~-~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~-~~i~~ 475 (501)
+-.|.-|| ..+| +.++.++.. .. .--.++..-+|.+.++.=..++|..+|..+|+++..+.-. ..+++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 77887787 4444 344444321 11 1123445567787777777889999999999999887653 45999
Q ss_pred EEECCC
Q 010777 476 VCWNKE 481 (501)
Q Consensus 476 ~~ws~~ 481 (501)
+||--.
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999655
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.34 E-value=2 Score=42.38 Aligned_cols=142 Identities=13% Similarity=0.175 Sum_probs=83.6
Q ss_pred ceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCC--------CEEEEEeCCCeEEEEeCCCCc-eeeecccC
Q 010777 307 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--------SLLASCSDDVTAKIWNMKQDK-YVHDLREH 377 (501)
Q Consensus 307 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--------~~l~s~s~Dg~i~iwd~~~~~-~~~~~~~~ 377 (501)
..+..+.....++-.|+..++.+..+.-|..- -+.|.|+. +.|+--|..+..|| |.+-.. .+.. ...
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI-DPR~~gNKi~v-~es 556 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI-DPRARGNKIKV-VES 556 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEe-cccccCCceee-eee
Confidence 34455666678888888888888888766654 46777753 34544444443333 443221 1110 011
Q ss_pred CCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 378 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 378 ~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
....+.-.|+..+.. ..-++|.||.-|.||+||--..+....+.+....|..|..+.+|.+|++.+. .+|.+-+
T Consensus 557 KdY~tKn~Fss~~tT-----esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 557 KDYKTKNKFSSGMTT-----ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred hhccccccccccccc-----cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 111222223322211 1127899999999999995433334456677788999999999998776553 3566666
Q ss_pred C
Q 010777 458 L 458 (501)
Q Consensus 458 ~ 458 (501)
+
T Consensus 631 ~ 631 (776)
T COG5167 631 V 631 (776)
T ss_pred c
Confidence 5
No 427
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=5.8 Score=38.69 Aligned_cols=118 Identities=15% Similarity=0.315 Sum_probs=74.4
Q ss_pred cCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCC
Q 010777 333 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 408 (501)
Q Consensus 333 ~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~d 408 (501)
....++|.++.||+|.+.+|.--.+.+|.+++...... .++.+.....|....|+.... +|--+..
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e----------~A~i~~~ 132 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE----------IAFITDQ 132 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee----------EEEEecC
Confidence 34567999999999999999999999999998743322 223334455688888876532 3333333
Q ss_pred CeEEEEeCCC-CeEEEEeeCCCCCeEEEEECCCCCEEEEEe--CCCcEEEEeCCCC
Q 010777 409 STVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSLKEG 461 (501)
Q Consensus 409 g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg~~lasgs--~Dg~i~iw~~~~~ 461 (501)
| +-+|-+.. .+.+...+.|...|+--.|.|+...+.-++ ..+++.=+.++++
T Consensus 133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 3 55554432 223444566777888888988877544333 3344444444444
No 428
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.20 E-value=19 Score=38.78 Aligned_cols=311 Identities=13% Similarity=0.172 Sum_probs=158.1
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeCCCe
Q 010777 156 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 235 (501)
Q Consensus 156 V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~ 235 (501)
|-...|--|..+|+.+..||.+.-+-+....-.. ...+. ..-...|+.--.|+..++.-+-+..|+-
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l------------sd~Kk-~~lGt~P~~Lr~f~sk~~t~vfa~sdrP 652 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL------------SDRKK-VTLGTQPISLRTFSSKSRTAVFALSDRP 652 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceE------------ccccc-cccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence 4455566678899999999998877654322100 00000 0011345666667766665555666777
Q ss_pred EEEEECCCceeEeecCCCCCEEEEEecCC--CCEEEEEecCCeEEEEeCCCcc--eeEeeeeccCCeEEEecCC-CceEE
Q 010777 236 ARIWSTNGDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRN-NVSFA 310 (501)
Q Consensus 236 i~iw~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~ 310 (501)
..+|..++++..+--.-+.--....|+.+ ...|+++.. +.+++--+..-. ..++...+ .....+.+.+ ...|.
T Consensus 653 ~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~ 730 (1096)
T KOG1897|consen 653 TVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFG 730 (1096)
T ss_pred EEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCC-CChhheEecccceEEE
Confidence 77777666554322111110011223322 234555543 455555443211 11222111 1222333332 22222
Q ss_pred EecC-----------CC---eEEEEEcCCCcceeeecCCC-------CceeEEEEcCC-CCEEEEEeC----------CC
Q 010777 311 TSST-----------DN---MIYVCKIGENRPIKTFAGHQ-------GEVNCVKWDPT-GSLLASCSD----------DV 358 (501)
Q Consensus 311 ~~~~-----------d~---~i~~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~-~~~l~s~s~----------Dg 358 (501)
+.+. .. .++++|-.+ ...+..|. ..|.++.|..| +.+++.|.. .|
T Consensus 731 v~s~r~e~~~~~~~ee~~~s~l~vlD~nT---f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~G 807 (1096)
T KOG1897|consen 731 VLSNRIESSAEYYGEEYEVSFLRVLDQNT---FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNG 807 (1096)
T ss_pred EEecccccchhhcCCcceEEEEEEecCCc---eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccc
Confidence 2211 11 233333322 23333332 23556668777 677777642 45
Q ss_pred eEEEEeCCCCceeeeccc--CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEE
Q 010777 359 TAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 436 (501)
Q Consensus 359 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 436 (501)
.|.+|.+.....+..+.. -.+.++++.- -+|. +| ++-+..|++|++.+.+.++.-..|..++..+.
T Consensus 808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk---------ll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~ 875 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK---------LL--AGINQSVRLYEWTTERELRIECNISNPIIALD 875 (1096)
T ss_pred eEEEEEEecCCceeeeeeeeeccceeehhh-hCCe---------EE--EecCcEEEEEEccccceehhhhcccCCeEEEE
Confidence 666666554222221111 1234444432 1221 33 45677999999999877777777888999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEec--CCCEEEEEECCCCCEEEEEECCCeEEEE
Q 010777 437 FSPTGEYLASGSLDKSMHIWSLK--EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 437 ~spdg~~lasgs~Dg~i~iw~~~--~~~~~~~~~~--~~~i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
..-.|..++.|..-++|.+-..+ .|.....-.. ...+.++.+- ++..++.+-.+|.+.+.
T Consensus 876 l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil-~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 876 LQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL-DDDTYLGAENSGNLFTV 939 (1096)
T ss_pred EEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe-cCceEEeecccccEEEE
Confidence 99899999999887776665544 3434332211 2234455443 34455555556655543
No 429
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=9.7 Score=35.09 Aligned_cols=158 Identities=15% Similarity=0.246 Sum_probs=95.1
Q ss_pred CCccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEE
Q 010777 151 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 230 (501)
Q Consensus 151 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 230 (501)
|-...|.++.|+|+.+.|++........||=-..|...... .+ .+ -+.--.+.|..+|++.++-
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti--------PL---~g-----~~DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI--------PL---TG-----FSDPETIEYIGGNQFVIVD 146 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe--------cc---cc-----cCChhHeEEecCCEEEEEe
Confidence 44455999999999999998888787777755444322111 11 11 1223457778888888888
Q ss_pred eCCCeEEEEECCCc--e------eEee--cCC-CCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeec-----
Q 010777 231 SYDGQARIWSTNGD--L------KCTL--SKH-KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----- 294 (501)
Q Consensus 231 ~~dg~i~iw~~~~~--~------~~~~--~~h-~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~----- 294 (501)
-.++.+.++.++.. . ...+ ..+ +..--+++|.|..+.|+.+-.-.=+.||.+....- .+..|
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~--~l~~~~~~~~ 224 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS--SLSVHASLDP 224 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc--ccccccccCc
Confidence 88888888875432 1 1111 122 44568899999999999887777677775542210 01111
Q ss_pred -------cCCeEEEecC--CCceEEEecCCCeEEEEEcCCC
Q 010777 295 -------SGPTLDVDWR--NNVSFATSSTDNMIYVCKIGEN 326 (501)
Q Consensus 295 -------~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~ 326 (501)
...+..+.|. .+..++.+..++.+...+....
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0112223332 4556667777776666665443
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.05 E-value=10 Score=35.23 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=120.8
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEECC-----C---ceeEeecC-----CCCCEEEEEecCCCC------------E
Q 010777 213 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-----G---DLKCTLSK-----HKGPIFSLKWNKKGD------------Y 267 (501)
Q Consensus 213 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-----~---~~~~~~~~-----h~~~V~~l~~~~~~~------------~ 267 (501)
..-+.|+++|.+.+-++....+...+|+.+ + .+..++.. ..+..+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345788999999998888888999999976 2 12333332 123567888875332 3
Q ss_pred EEEEecCCeEEEEeCCCcce---e--Eeeeec-cCCeE---EEec--CCCceEEEecCCCeEEEEEcCCCccee--eec-
Q 010777 268 LLTGSCDKTAIVWDVKTEEW---K--QQFEFH-SGPTL---DVDW--RNNVSFATSSTDNMIYVCKIGENRPIK--TFA- 333 (501)
Q Consensus 268 l~s~s~D~~i~iwd~~~~~~---~--~~~~~~-~~~~~---~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~- 333 (501)
|+.++.||+|.-|...-... . ..+... .+.+. ++.- ..+..+++--..++|-|+|-.-.++.. .|.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 68889999999998532221 1 111111 12221 1111 123344444456666666543221100 000
Q ss_pred ---------------CCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecc--cCCCCEEEEEEcCCCCCCCCC
Q 010777 334 ---------------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNP 396 (501)
Q Consensus 334 ---------------~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~p~g~~~~~~ 396 (501)
+..-.|+-..-.++++.=+.|..-|.|-+||+. +.+++.+. +.-..-+.++..|..-+....
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000011111222233222334445688899875 55555542 223344556665643322211
Q ss_pred CCcEEEEEEeCCCeEEEEeCCCCeEEEEeeCCC------CCeEEEEECC
Q 010777 397 NQQLILASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSP 439 (501)
Q Consensus 397 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~sp 439 (501)
-+|+.--.||+|..||..+++.+-.+..-. ...+.|+|..
T Consensus 262 ---~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ---ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ---CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 156655679999999999998877765433 2457788865
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.03 E-value=5.3 Score=41.47 Aligned_cols=109 Identities=15% Similarity=0.268 Sum_probs=67.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecc-cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeC---
Q 010777 341 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV--- 416 (501)
Q Consensus 341 ~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~--- 416 (501)
-+.-+.-++..+.-+...++.|||.+.+....+-. .....|..+.|...+. .+.+|+ -+..+.|.++--
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d------~qsiLa-VGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD------GQSILA-VGFPHHVLLYTQLRY 106 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC------CCEEEE-EEcCcEEEEEEccch
Confidence 34444444444444445579999998876543322 4567899999975432 334555 456778888742
Q ss_pred --CCC----eEEEE--eeCCC-CCeEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010777 417 --ELG----KLLYS--LNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSL 458 (501)
Q Consensus 417 --~~~----~~~~~--~~~h~-~~v~~l~~spdg~~lasgs~Dg~i~iw~~ 458 (501)
.+. ..+.. +..|+ .+|.+..|.++|.+++.+| +.+.|++-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111 12222 33444 5799999999998776554 56888864
No 432
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.92 E-value=12 Score=39.28 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=67.8
Q ss_pred EEEEEEeCCCeEEEEeCCC-------C-------------eEEEEeeCCCCCeEEEEEC--CCCCEEEEEeCCCcEEEEe
Q 010777 400 LILASASFDSTVKLWDVEL-------G-------------KLLYSLNGHREPVYSLAFS--PTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 400 ~~l~sgs~dg~i~iwd~~~-------~-------------~~~~~~~~h~~~v~~l~~s--pdg~~lasgs~Dg~i~iw~ 457 (501)
-+|+.|..||.|.+|.+.. . ++.+.+. ....++.|+++ ...++||+++....|.||-
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 4788899999999996521 0 0112222 23478999998 7788888888888888876
Q ss_pred CCC--Cee--EEEEecCCCEEEEEECCCC---C---EEEEEECCCeEEEEEe
Q 010777 458 LKE--GKI--VKTYTGNGGIFEVCWNKEG---D---KIAACFANHTVCVLDF 499 (501)
Q Consensus 458 ~~~--~~~--~~~~~~~~~i~~~~ws~~g---~---~la~~~~d~~v~v~~~ 499 (501)
... .+. .........|.+++|-++. . .|++++-.|.|.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 543 221 1122334457888887753 2 7888999999999987
No 433
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.69 E-value=0.65 Score=28.97 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.6
Q ss_pred CCEEEEEECCC-C--CEEEEEECCCeEEEEEee
Q 010777 471 GGIFEVCWNKE-G--DKIAACFANHTVCVLDFR 500 (501)
Q Consensus 471 ~~i~~~~ws~~-g--~~la~~~~d~~v~v~~~~ 500 (501)
+.+.++.|+|. + +.||.+-..+.|+|+|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 35788999985 4 599999999999999998
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=14 Score=38.60 Aligned_cols=187 Identities=11% Similarity=0.198 Sum_probs=91.5
Q ss_pred cCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceee---ecCCCCceeEEEEcCCCC
Q 010777 273 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT---FAGHQGEVNCVKWDPTGS 349 (501)
Q Consensus 273 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~ 349 (501)
.--.|+|++.. |..........+.+..+.|..+..++.-..+|+++++++-....-.. +......|.-+.+..+|-
T Consensus 62 a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 62 ARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred cceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 34567888864 34344333334477889999999999999999999998754321110 011122344444444554
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeccc-CCCCEEEEEEc--CCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCe-EEEEe
Q 010777 350 LLASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWS--PTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSL 425 (501)
Q Consensus 350 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~--p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~ 425 (501)
.+.+ .+|.+.+-.-.....+..+.. ........+|. +++.. ...+|...-..+ ..++-...+. ....+
T Consensus 141 avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~-----~~~ll~v~~~v~-~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQ-----STILLDVDVAVG-LHICQVEESRVQLHAL 212 (829)
T ss_pred EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCc-----ceeEEeechhhh-hcccceeccccccccc
Confidence 4443 345554433222212222221 11111112222 11110 001111110000 0111111110 01111
Q ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe
Q 010777 426 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 468 (501)
Q Consensus 426 ~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~ 468 (501)
..-...+..++.||++++||--..+|.|.+-+....+....+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1112457788999999999999999999998887665555543
No 435
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.54 E-value=1.2 Score=27.49 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=29.7
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeeEEEEecCCCEEEEEEC
Q 010777 439 PTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 479 (501)
Q Consensus 439 pdg~~lasgs-~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws 479 (501)
|++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 5777666554 5789999999999888887664445566553
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=11 Score=37.49 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=52.3
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC
Q 010777 338 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 417 (501)
Q Consensus 338 ~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 417 (501)
.|..+..++.|..++-.|-+|.+.++=.+....-..+......|+| |.+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~C----------------------------Rt~~i- 155 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNC----------------------------RTTPV- 155 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEE----------------------------Eeecc-
Confidence 5778889999999999999997766532211111111111111111 11111
Q ss_pred CCeEEEEeeCCCCCeEEEEECCCC---CEEEEEeCCCcEEEEeCCCCe
Q 010777 418 LGKLLYSLNGHREPVYSLAFSPTG---EYLASGSLDKSMHIWSLKEGK 462 (501)
Q Consensus 418 ~~~~~~~~~~h~~~v~~l~~spdg---~~lasgs~Dg~i~iw~~~~~~ 462 (501)
+..+++-..| -.+..++|+|+. ..|..-+.|..|++|++..-.
T Consensus 156 -~~~~ftss~~-ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 156 -AERFFTSSTS-LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred -cceeeccCCc-eeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 1222222212 235667888875 566677778888888876544
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.19 E-value=6.8 Score=31.52 Aligned_cols=120 Identities=17% Similarity=0.118 Sum_probs=71.2
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCc--------eeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEE
Q 010777 342 VKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 413 (501)
Q Consensus 342 v~~~~~~~~l~s~s~Dg~i~iwd~~~~~--------~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 413 (501)
-.|......|++++.-|+|.|++..... .+..+ .....|++++-.+-.. . ...-.|+.|+ ..+|..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~---~-~~~D~LliGt-~t~lla 77 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP---D-DGRDCLLIGT-QTSLLA 77 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC---C-CCcCEEEEec-cceEEE
Confidence 4555556678888888899998765332 12222 2345677775444321 0 1112455565 457999
Q ss_pred EeCCCCeEEEEeeCCCCCeEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeeEEEEe
Q 010777 414 WDVELGKLLYSLNGHREPVYSLAFSP---TGEYLASGSLDKSMHIWSLKEGKIVKTYT 468 (501)
Q Consensus 414 wd~~~~~~~~~~~~h~~~v~~l~~sp---dg~~lasgs~Dg~i~iw~~~~~~~~~~~~ 468 (501)
||+.....++.-. -...|+++.+-. ...-|+..|.+..|.-||....++.++.+
T Consensus 78 YDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 78 YDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred EEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 9998777665433 235688887632 22334555557888888877666666544
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.87 E-value=0.042 Score=53.17 Aligned_cols=132 Identities=14% Similarity=0.265 Sum_probs=88.9
Q ss_pred EEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecC--CCceEEEecCCCeEEEEEcCCCcceeeecC
Q 010777 257 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAG 334 (501)
Q Consensus 257 ~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 334 (501)
....|.|.+.-++.++.+..+..||-.. +...... ..+...+++|. .+..++.+...+.+++|++.....-+.-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 4567888887788888899999998433 2221111 12223444553 334556677888999999876543221112
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCC
Q 010777 335 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 390 (501)
Q Consensus 335 h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g 390 (501)
-...-.-+.|++-+..++.+-..|.++|++..+.+.+..+-.|...++.++|.+.+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 22222227899988889999999999999988777666555588899999998876
No 439
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=6.1 Score=39.26 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=53.7
Q ss_pred CEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecC
Q 010777 255 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 334 (501)
Q Consensus 255 ~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 334 (501)
.|..+..++.|..++-.+.+|.+.++=.+....-..+......++|-.+.-...|.+++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss--------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS--------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC---------------------
Confidence 56778889999988888888877665433221111222111122222221111111111
Q ss_pred CCCceeEEEEcCCC---CEEEEEeCCCeEEEEeCCCCc
Q 010777 335 HQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDK 369 (501)
Q Consensus 335 h~~~v~~v~~~~~~---~~l~s~s~Dg~i~iwd~~~~~ 369 (501)
..-.+..++|||+. ..+..-+.|.+||+||+....
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 11245678999986 567778889999999986544
No 440
>PRK10115 protease 2; Provisional
Probab=90.55 E-value=27 Score=37.36 Aligned_cols=192 Identities=9% Similarity=0.069 Sum_probs=96.1
Q ss_pred cceeEEEECCCCCEEEEEE-CCC----cEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEE
Q 010777 154 SEVCACAWSPAGSLLASGS-GDS----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 228 (501)
Q Consensus 154 ~~V~~~~~sp~~~~l~sgs-~D~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 228 (501)
-.+..+.|||||++|+-+. .+| .|++-|+.++...... + ...-..++|++|++.|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------i-------~~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------L-------DNVEPSFVWANDSWTFY 187 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------c-------cCcceEEEEeeCCCEEE
Confidence 4577889999999877543 223 4777777655321100 0 00114589999998776
Q ss_pred EEeCC------CeEEEEECCCc---eeEeecCCCCCEE-EEEecCCCCEEEEEec---CCeEEEEeCC--CcceeEeeee
Q 010777 229 TGSYD------GQARIWSTNGD---LKCTLSKHKGPIF-SLKWNKKGDYLLTGSC---DKTAIVWDVK--TEEWKQQFEF 293 (501)
Q Consensus 229 sg~~d------g~i~iw~~~~~---~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---D~~i~iwd~~--~~~~~~~~~~ 293 (501)
-...+ ..|+.+++... ....+.......+ .+..+.++.+++..+. ++.+.+|+.. .+.+...+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 65443 35666676543 2223333333333 2333447777664443 3468888842 3332222222
Q ss_pred ccCCeEEEecCCCceEEEecC---CCeEEEEEcCCCcceeeecCC-C-CceeEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010777 294 HSGPTLDVDWRNNVSFATSST---DNMIYVCKIGENRPIKTFAGH-Q-GEVNCVKWDPTGSLLASCSDDVTAKIWNM 365 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~h-~-~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~ 365 (501)
..+....+.-..+..++.... ...|...++........+..+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus 268 ~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 268 RKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 222222222112222333221 223444444422222334444 3 367778887 4456677777887665543
No 441
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.53 E-value=19 Score=35.45 Aligned_cols=219 Identities=12% Similarity=0.150 Sum_probs=96.4
Q ss_pred CCCEEEEEe-cCCeEEEEeCCCc----ceeEeeee---cc----CCeEEEecCC-CceEEEe--c----CCCeEEEEEcC
Q 010777 264 KGDYLLTGS-CDKTAIVWDVKTE----EWKQQFEF---HS----GPTLDVDWRN-NVSFATS--S----TDNMIYVCKIG 324 (501)
Q Consensus 264 ~~~~l~s~s-~D~~i~iwd~~~~----~~~~~~~~---~~----~~~~~~~~~~-~~~~~~~--~----~d~~i~~~~~~ 324 (501)
..++|+..+ ....|.|.|+.+. ++.+.++. .. .....+.... ...++++ . ..|.+.+.|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 346777666 5678999988643 33333331 10 0111222222 3234333 1 12345555555
Q ss_pred CCcceeeecCC---CCceeEEEEcCCCCEEEEEeC--------------------CCeEEEEeCCCCceeeecccCC--C
Q 010777 325 ENRPIKTFAGH---QGEVNCVKWDPTGSLLASCSD--------------------DVTAKIWNMKQDKYVHDLREHS--K 379 (501)
Q Consensus 325 ~~~~~~~~~~h---~~~v~~v~~~~~~~~l~s~s~--------------------Dg~i~iwd~~~~~~~~~~~~~~--~ 379 (501)
+.......... ...-..+-|.|..+.++|... -.++.+||+.+.+.++++.-.. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 44433333221 122345667777777776542 3579999999999988876432 3
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE-eCCCCe----EEEEeeCC-----------------CCCeEEEEE
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW-DVELGK----LLYSLNGH-----------------REPVYSLAF 437 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw-d~~~~~----~~~~~~~h-----------------~~~v~~l~~ 437 (501)
....|+|..+.. ...-++.+...++|-.| ....++ .+..+..- ..-|++|..
T Consensus 246 ~pLEvRflH~P~------~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 246 MPLEVRFLHDPD------ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEE-SSTT--------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred ceEEEEecCCCC------ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 455677765432 12234444444555444 323332 22233211 133799999
Q ss_pred CCCCCEEEEEe-CCCcEEEEeCCCC---eeEEEEe-c----------------CCCEEEEEECCCCCEEEEE
Q 010777 438 SPTGEYLASGS-LDKSMHIWSLKEG---KIVKTYT-G----------------NGGIFEVCWNKEGDKIAAC 488 (501)
Q Consensus 438 spdg~~lasgs-~Dg~i~iw~~~~~---~~~~~~~-~----------------~~~i~~~~ws~~g~~la~~ 488 (501)
|.|.+||.... ..|.|+.||+.+- +++.... + .++..=+..|.||++|...
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 99999997665 5899999999763 3333221 1 1233557788999887764
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.41 E-value=1.5 Score=37.56 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.5
Q ss_pred CEEEEEECCCC------CEEEEEECCCeEEEEE
Q 010777 472 GIFEVCWNKEG------DKIAACFANHTVCVLD 498 (501)
Q Consensus 472 ~i~~~~ws~~g------~~la~~~~d~~v~v~~ 498 (501)
.+..++|||.| ..||+...++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 57889999976 4899999999999985
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=12 Score=32.71 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=79.7
Q ss_pred CCCEEEEEEC--CCcEEEEecCCCCCCCCCCCCCceEEEEEeeccc-cccCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 010777 164 AGSLLASGSG--DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS 240 (501)
Q Consensus 164 ~~~~l~sgs~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~ 240 (501)
+|+++.|.|. ...|++|++.+++........+- ..-+. ...-...++.+. -.+|...++|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~------~~FgEGit~~gd~~y~LT-----------w~egvaf~~d 117 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD------TVFGEGITKLGDYFYQLT-----------WKEGVAFKYD 117 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc------cccccceeeccceEEEEE-----------eccceeEEEC
Confidence 4577777774 45799999987753221110000 00000 000011222222 3456666776
Q ss_pred CCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeee--ccCC---eEEEecCCCceEEEecCC
Q 010777 241 TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGP---TLDVDWRNNVSFATSSTD 315 (501)
Q Consensus 241 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~d 315 (501)
...-...--..-.+.=++++ .++..|+.+....+++.-|+.+-....+... ...| .+.+.|.+...++-.-..
T Consensus 118 ~~t~~~lg~~~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t 195 (262)
T COG3823 118 ADTLEELGRFSYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQT 195 (262)
T ss_pred hHHhhhhcccccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeee
Confidence 54321111111234446665 3555577666666777777766543333221 1122 233444444444333222
Q ss_pred CeEEEEEcCCCcceeee------------cCCCCceeEEEEcCCC-CEEEEE
Q 010777 316 NMIYVCKIGENRPIKTF------------AGHQGEVNCVKWDPTG-SLLASC 354 (501)
Q Consensus 316 ~~i~~~~~~~~~~~~~~------------~~h~~~v~~v~~~~~~-~~l~s~ 354 (501)
..|...+..+++.+..+ ..|....+.+++.|++ ++++||
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33333333333333221 1244567889999887 555655
No 444
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.16 E-value=19 Score=38.03 Aligned_cols=109 Identities=11% Similarity=0.207 Sum_probs=71.6
Q ss_pred CCCceEEEecCCCeEEEEEcCC-------C-------------cceeeecCCCCceeEEEEc--CCCCEEEEEeCCCeEE
Q 010777 304 RNNVSFATSSTDNMIYVCKIGE-------N-------------RPIKTFAGHQGEVNCVKWD--PTGSLLASCSDDVTAK 361 (501)
Q Consensus 304 ~~~~~~~~~~~d~~i~~~~~~~-------~-------------~~~~~~~~h~~~v~~v~~~--~~~~~l~s~s~Dg~i~ 361 (501)
.....++.+.+||.|.+|.+.. . +|...+. -...+++++++ ...++||.+++...|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence 3445678899999999997521 0 1111111 23468899998 8889999999999998
Q ss_pred EEeCCC--Cceee-ecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 010777 362 IWNMKQ--DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 416 (501)
Q Consensus 362 iwd~~~--~~~~~-~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~ 416 (501)
||-+.. .+... .-..+..-|.+|.|-++... +.+...|++++-.|.+-+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d---~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLD---PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCC---CccceEEEEEeccCcEEEEEE
Confidence 885543 12111 11125566788888776532 222247888999999998877
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.09 E-value=2.7 Score=35.98 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 380 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 380 ~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
.+..++|||.|-+ ++...+||+...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~---~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG---PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC---CCCceEEEEEcCCCeEEEEecCC
Confidence 6788999998863 34577999999999999997653
No 446
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.89 E-value=16 Score=33.72 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=79.1
Q ss_pred cCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeecc-CCeEEEecCCCceEEEe-cCCCeEEEEEcCCCc
Q 010777 250 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATS-STDNMIYVCKIGENR 327 (501)
Q Consensus 250 ~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~ 327 (501)
.+-+..|.++.|+|+.+.|++......-.+|=...|.++.++.... ...-.+.|..+..|+.+ -.+..++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 4455569999999999999998888888888667788777665332 12234556555555544 456777776665442
Q ss_pred cee----------eecCCCCceeEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010777 328 PIK----------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 366 (501)
Q Consensus 328 ~~~----------~~~~h~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~ 366 (501)
.+. .....+...-.++|.|..+.|..+-+-.-+.||.+.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 211 111124457789999999988888887778887665
No 447
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.52 E-value=18 Score=33.70 Aligned_cols=226 Identities=15% Similarity=0.224 Sum_probs=119.3
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeecc-ccccCCCCeEEEEECCCCC---------
Q 010777 156 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGT--------- 225 (501)
Q Consensus 156 V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~~~~--------- 225 (501)
-..|+|+|.+.+-++...-+...+||.......... .++ ... +.. .........+.+.|+....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~~L---~vt-iP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--DPL---VVV-IPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCc--cce---EEE-ecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 357999999998888888899999997622111111 011 111 110 0001123456666664322
Q ss_pred ---EEEEEeCCCeEEEEECCCcee------EeecC-CCCCEE-EEEecC--CCCEEEEEe-cCCeEEEEeCCCccee--E
Q 010777 226 ---LLATGSYDGQARIWSTNGDLK------CTLSK-HKGPIF-SLKWNK--KGDYLLTGS-CDKTAIVWDVKTEEWK--Q 289 (501)
Q Consensus 226 ---~l~sg~~dg~i~iw~~~~~~~------~~~~~-h~~~V~-~l~~~~--~~~~l~s~s-~D~~i~iwd~~~~~~~--~ 289 (501)
.|+.++.||+|.-|...-... ..+.. ..+.|+ .|++.. .+++|+.+. ..++|.++|-.=.... .
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 367789999999998532211 22222 235553 455543 356666553 4688888874322111 0
Q ss_pred eeeeccC----CeEEEecCCCceEE-------------EecCCCeEEEEEcCCCcceeeec--CCCCceeEEEEcC----
Q 010777 290 QFEFHSG----PTLDVDWRNNVSFA-------------TSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDP---- 346 (501)
Q Consensus 290 ~~~~~~~----~~~~~~~~~~~~~~-------------~~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~v~~~~---- 346 (501)
.|....- ....+.-.....++ .+..-|.|-+++... ..++.+. +.-..-+.|+.-|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhC
Confidence 0100000 00011111111222 222335666776643 3334342 2233455666644
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCCceeeecccCCC------CEEEEEEcC
Q 010777 347 --TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK------EIYTIRWSP 388 (501)
Q Consensus 347 --~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~v~~i~~~p 388 (501)
.|.+|+----||+|..||..+++.+..+....+ .++.|.|..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 567888777899999999999988877765433 245566543
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=89.51 E-value=26 Score=35.65 Aligned_cols=102 Identities=10% Similarity=0.055 Sum_probs=47.3
Q ss_pred CCCEEEEEecC--CeEEEEeCCCcceeEeeeeccCC-eEEEecCCCceEEEecCCC---eEEEEEcCCCcc--eeeecCC
Q 010777 264 KGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDN---MIYVCKIGENRP--IKTFAGH 335 (501)
Q Consensus 264 ~~~~l~s~s~D--~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~~--~~~~~~h 335 (501)
++...+.|+.+ .++..||+.++.|...-...... -.+....++..++.|+.++ .+..|+..++.= +..+...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 45555666643 46888998877775432221111 1122223455566655432 344555443211 0001000
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 010777 336 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 370 (501)
Q Consensus 336 ~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~ 370 (501)
.... +++ .-++++.+.|+ .+.+||..+.+.
T Consensus 398 r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 398 HYKS-CAL-VFGRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred cccc-eEE-EECCEEEEECC---ceEEecCCCCcE
Confidence 1111 121 23566667664 467788766543
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.06 E-value=2.7 Score=36.80 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=43.6
Q ss_pred CEEEEEeCCCcEEEEeCC--CCeeEEEEecCCCEEEEEECCCCCEEEEEECC---C---eEEEE-Eee
Q 010777 442 EYLASGSLDKSMHIWSLK--EGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---H---TVCVL-DFR 500 (501)
Q Consensus 442 ~~lasgs~Dg~i~iw~~~--~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d---~---~v~v~-~~~ 500 (501)
.+|..+...+.|.+|++. ...++.++..-+.|..+..+..|++|++--.. . .+++| |||
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 344444556789999988 34678888888889999999999999986221 2 56666 665
No 450
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=88.76 E-value=4.7 Score=38.03 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=50.3
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEecC-CCE-----EEEEECCCCCEEEEEECCCeEEEEE
Q 010777 432 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGI-----FEVCWNKEGDKIAACFANHTVCVLD 498 (501)
Q Consensus 432 v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~~-~~i-----~~~~ws~~g~~la~~~~d~~v~v~~ 498 (501)
|++|...++|.+|+|.-.-..|.+.+..+|+++..+.+. ..- ..++|..+-+++-.+..+++|.|||
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
Confidence 788888899999999999999999999999999988665 221 1255665555555555666666664
No 451
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.87 E-value=34 Score=34.83 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=58.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCC---EEEEEEcCCCCCCCCCCCcEEEEEEeC-----------
Q 010777 342 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE---IYTIRWSPTGSGTNNPNQQLILASASF----------- 407 (501)
Q Consensus 342 v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~---v~~i~~~p~g~~~~~~~~~~~l~sgs~----------- 407 (501)
+..-++|.+++..+ ..+..+|+. |+.+......... -+.+..-|+|. +|+.+..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn---------~L~l~~~~~~~~~~~~~~ 220 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN---------LLILASETKYVDEDKDVD 220 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS----------EEEEEEETTEE-TS-EE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC---------EEEEEeecccccCCCCcc
Confidence 56678888887665 678888875 4443332221111 23344556653 3333331
Q ss_pred --CCeEEEEeCCCCeEEEEee--CCC-------------------------CCeEEEEECC-CCCEEEEEeCCCcEEEEe
Q 010777 408 --DSTVKLWDVELGKLLYSLN--GHR-------------------------EPVYSLAFSP-TGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 408 --dg~i~iwd~~~~~~~~~~~--~h~-------------------------~~v~~l~~sp-dg~~lasgs~Dg~i~iw~ 457 (501)
...|..+| .+|+.+..+. .|- --+++|.+.| ++.+|+|+-.-..|...|
T Consensus 221 ~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 221 TVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp --S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred EecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 22355566 6677665532 110 1388999999 556666665566899999
Q ss_pred CCCCeeEEEEecC
Q 010777 458 LKEGKIVKTYTGN 470 (501)
Q Consensus 458 ~~~~~~~~~~~~~ 470 (501)
.+++++...+..+
T Consensus 300 ~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 300 YRTGKIKWILGPP 312 (477)
T ss_dssp -TTS-EEEEES-S
T ss_pred CCCCcEEEEeCCC
Confidence 9999988777543
No 452
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.22 E-value=18 Score=38.08 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=65.3
Q ss_pred CccceeEEEECCCCCEEEEEECCCcEEEEecCCC----CCCCCCC----CCCceEEEE---Eeecccc------------
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADG----TSNGGAQ----NGPLNVLVL---KHVKGRT------------ 208 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~~----~~~~~~~----~~~~~~~~~---~~~~~~~------------ 208 (501)
-..+|-+.+||.|.+.++....+..|-+++-.-. ....... +..+.+--- .++++..
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~ 190 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPY 190 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcc
Confidence 3567899999999998777777888888763210 0000000 000000000 0011000
Q ss_pred -------ccCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCC
Q 010777 209 -------NEKSKDVTTLDWNGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 275 (501)
Q Consensus 209 -------~~~~~~V~~~~~s~~~~~l~sg~~d----g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 275 (501)
..-...-.-+.|-.|..|++.+... +.+|+|..+|.+-......++.-..+.|-|+|..++|-..||
T Consensus 191 ~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~ 268 (1243)
T COG5290 191 MVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDG 268 (1243)
T ss_pred cccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCC
Confidence 0001112346677777777776543 356777655544322222333334588999999998876554
No 453
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.08 E-value=7.2 Score=29.07 Aligned_cols=48 Identities=6% Similarity=-0.050 Sum_probs=32.5
Q ss_pred EeCCCcEEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEE-ECCCeE
Q 010777 447 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTV 494 (501)
Q Consensus 447 gs~Dg~i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~-~~d~~v 494 (501)
+..+|++.-||..+++......+-.-.+.++.++|++.|+.+ .....|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceE
Confidence 445688999999998865555555567899999999977766 333444
No 454
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.04 E-value=34 Score=33.94 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=37.6
Q ss_pred EEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCe--EEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010777 400 LILASASFDSTVKLWDVELGKLLYSLNGHREPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 400 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~spdg~~lasgs~Dg~i~iw~~~~ 460 (501)
..++.++.++++.||. ..++++..+....|| .-..|..-...|++-+.+|.|.+-=+.|
T Consensus 301 ~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 3577888999999984 345666655444444 2223333456788888888888764443
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=86.88 E-value=30 Score=33.25 Aligned_cols=174 Identities=9% Similarity=0.067 Sum_probs=88.2
Q ss_pred EecCCeEEEEeCCCcceeEeeeeccCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeee-cCCCCceeEEEEcCCCC
Q 010777 271 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGS 349 (501)
Q Consensus 271 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~ 349 (501)
++..|.|..=+-....|........+.+..+.+.++..++..+..|.++.-....+..-... .+-...+.++.+.++++
T Consensus 148 ~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~ 227 (334)
T PRK13684 148 ATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN 227 (334)
T ss_pred eeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC
Confidence 34445444332222334433222234456666666666666666676654311111111111 22345788999999998
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeccc----CCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEEe
Q 010777 350 LLASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL 425 (501)
Q Consensus 350 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 425 (501)
+++.+ ..|.+++=....+..-..... ....++.+.+.|++. +++ ++.+|.|.. ....++.-..+
T Consensus 228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~---------~~~-~G~~G~v~~-S~d~G~tW~~~ 295 (334)
T PRK13684 228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE---------IWA-GGGNGTLLV-SKDGGKTWEKD 295 (334)
T ss_pred EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC---------EEE-EcCCCeEEE-eCCCCCCCeEC
Confidence 87765 457665422232221111111 123467788877654 344 445675543 33333332222
Q ss_pred e---CCCCCeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 426 N---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 426 ~---~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
. .-....+.+.|..+++.+++ +..|.|..|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 296 PVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 2 22235788888877766664 5577777665
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.80 E-value=2.5 Score=25.62 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=19.0
Q ss_pred CCCEEEEEECCCCCEEEEEEC-C--CeEEEE
Q 010777 470 NGGIFEVCWNKEGDKIAACFA-N--HTVCVL 497 (501)
Q Consensus 470 ~~~i~~~~ws~~g~~la~~~~-d--~~v~v~ 497 (501)
.......+|||||+.|+.++. + |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345678999999999987754 3 554444
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.27 E-value=7.9 Score=34.61 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=50.9
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCceeE--------eec-------CCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCC
Q 010777 220 WNGEGTLLATGSYDGQARIWSTNGDLKC--------TLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 284 (501)
Q Consensus 220 ~s~~~~~l~sg~~dg~i~iw~~~~~~~~--------~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~ 284 (501)
+...+.+|+.-..+|.+++||+...... .+. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456788999999999999998653221 121 3456788888998887776655 57889999877
Q ss_pred cceeEe
Q 010777 285 EEWKQQ 290 (501)
Q Consensus 285 ~~~~~~ 290 (501)
+.|+..
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 776654
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.72 E-value=4.6 Score=24.39 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=19.4
Q ss_pred CCCCeEEEEECCCCCEEEEEe-CC--CcEEEE
Q 010777 428 HREPVYSLAFSPTGEYLASGS-LD--KSMHIW 456 (501)
Q Consensus 428 h~~~v~~l~~spdg~~lasgs-~D--g~i~iw 456 (501)
....-...+|||||++|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445567889999999887544 44 555555
No 459
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.70 E-value=42 Score=33.70 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=61.8
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeeecc-----cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC-
Q 010777 336 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASF- 407 (501)
Q Consensus 336 ~~~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~-----~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~- 407 (501)
-...+.|+|.|||++|++--..|.|++++..++. .+..+. ........|+++|+-.. ...++.+|+.....
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~-~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQ-EKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccc-cCCCcEEEEEEeccC
Confidence 3456789999999988887667999999765432 221111 12456788999987510 01122344443221
Q ss_pred -------CCeEEEEeCCC-------CeEEEE-ee---CCCCCeEEEEECCCCCEEEEEeCC
Q 010777 408 -------DSTVKLWDVEL-------GKLLYS-LN---GHREPVYSLAFSPTGEYLASGSLD 450 (501)
Q Consensus 408 -------dg~i~iwd~~~-------~~~~~~-~~---~h~~~v~~l~~spdg~~lasgs~D 450 (501)
...|.-|.+.. .+.+.. +. .|. -..|+|.|||.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 12333343321 122222 21 232 3468899999877765543
No 460
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.25 E-value=59 Score=34.21 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=26.2
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCC
Q 010777 155 EVCACAWSPAGSLLASGSGDSTARIWTIAD 184 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sgs~D~~i~iWd~~~ 184 (501)
-++++.-+|.|+-+++|+.||+|++|++..
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 467788889999999999999999999754
No 461
>PRK10115 protease 2; Provisional
Probab=83.95 E-value=66 Score=34.52 Aligned_cols=235 Identities=7% Similarity=0.044 Sum_probs=110.1
Q ss_pred CeEEEEECCCCCEEEEEeCC-----CeEEEEECCCce--eEeecCCCCCEEEEEecCCCCEEEEEecC------CeEEEE
Q 010777 214 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVW 280 (501)
Q Consensus 214 ~V~~~~~s~~~~~l~sg~~d-----g~i~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D------~~i~iw 280 (501)
.+..+.|||||++|+-+... ..|++-++.+.. ...+.+ .-..++|.++++.|+-...+ ..|+.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899999988865432 256777775432 112221 11569999999877655442 357778
Q ss_pred eCCCc--ceeEeeeeccCCeE-EEecC-CC-ceEEEe--cCCCeEEEEEcC--CCcceeeecCCCCceeEEEEcCCCCEE
Q 010777 281 DVKTE--EWKQQFEFHSGPTL-DVDWR-NN-VSFATS--STDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLL 351 (501)
Q Consensus 281 d~~~~--~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~--~~d~~i~~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l 351 (501)
++.++ +-...+........ ..... +. ..++.+ ..++.+++++.. ...+...+..-.+....+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88776 33333332222221 11112 22 223222 334567777742 2222211211111122222 2223333
Q ss_pred EEEeCC-CeEEEE--eCCCCceeeecccC-C-CCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-CeEEEEe
Q 010777 352 ASCSDD-VTAKIW--NMKQDKYVHDLREH-S-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSL 425 (501)
Q Consensus 352 ~s~s~D-g~i~iw--d~~~~~~~~~~~~~-~-~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~ 425 (501)
+....+ ...+|. ++........+..+ . ..+..+.+..+ .++++...+|.-+++-+.. +..+..+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 333221 223333 33311111223333 2 25666666522 3667777777765554332 2233333
Q ss_pred e-CCCCCeEEEEEC--CCC-CEEEEEeC---CCcEEEEeCCCCe
Q 010777 426 N-GHREPVYSLAFS--PTG-EYLASGSL---DKSMHIWSLKEGK 462 (501)
Q Consensus 426 ~-~h~~~v~~l~~s--pdg-~~lasgs~---Dg~i~iw~~~~~~ 462 (501)
. .....+..+.++ +++ .++++.+. -+.+..+|..+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 354 AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3 222223334455 443 34444432 3678889988765
No 462
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=30 Score=30.31 Aligned_cols=171 Identities=12% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCCEEEEEecC--CeEEEEeCCCcceeEeeeeccCCeE--EEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCCCce
Q 010777 264 KGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPTL--DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 339 (501)
Q Consensus 264 ~~~~l~s~s~D--~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v 339 (501)
+|+++.+.+.- ..|++||+.+++....-......+. .+.-..+..+...-.++.-+.+|..+-+.+..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 34566665543 4699999998875543332211111 0111122233444455566666655544443332 22333
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeeccc--CCCC---EEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEE
Q 010777 340 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKE---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 414 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~~---v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 414 (501)
..++. |++.|+.+....+++.-|.++-....++.. ...+ +..+.|- +| .+.|---.+..|...
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG---------~lyANVw~t~~I~rI 201 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG---------ELYANVWQTTRIARI 201 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-cc---------EEEEeeeeecceEEE
Confidence 44443 454455554444566555443322211110 0111 1112221 11 122222233344444
Q ss_pred eCCCCeEEEEee------------CCCCCeEEEEECCCC-CEEEEE
Q 010777 415 DVELGKLLYSLN------------GHREPVYSLAFSPTG-EYLASG 447 (501)
Q Consensus 415 d~~~~~~~~~~~------------~h~~~v~~l~~spdg-~~lasg 447 (501)
+..+|+.+..+. .|....+.|++.|++ ++++||
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 566666554332 234456789999987 566665
No 463
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.50 E-value=20 Score=32.49 Aligned_cols=126 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred eEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeC
Q 010777 340 NCVKWDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 416 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~ 416 (501)
.+-.+-+||++|.+|+.- ..+|+++...................-+|-|.. ..-++++.+++.|....+..+|.-
T Consensus 70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~--~~L~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA--TTLPDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc--eECCCCCEEEEeCcCCCcccccCC
Confidence 344567899999998762 247777754310001111111112222444432 122344456666666666677765
Q ss_pred CC-CeEEEE--eeCC---CC---CeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 010777 417 EL-GKLLYS--LNGH---RE---PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 469 (501)
Q Consensus 417 ~~-~~~~~~--~~~h---~~---~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~~ 469 (501)
.. ...... +-.. .. ----+...|+|++++.+..+. .|||..+.+.++.++.
T Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 148 KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 32 111111 1100 00 111356689999999888654 4568877777666543
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.25 E-value=60 Score=36.38 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=25.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 010777 214 DVTTLDWNGEGTLLATGSYDGQARIWSTNG 243 (501)
Q Consensus 214 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~ 243 (501)
....++|.|.-.+++.|...|.|+++-..+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccc
Confidence 345678999999999999999999997554
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.64 E-value=6.8 Score=40.69 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=43.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-----ce-eEe----------ecC-----------CCCCEEEEEecC----CCCEEEE
Q 010777 222 GEGTLLATGSYDGQARIWSTNG-----DL-KCT----------LSK-----------HKGPIFSLKWNK----KGDYLLT 270 (501)
Q Consensus 222 ~~~~~l~sg~~dg~i~iw~~~~-----~~-~~~----------~~~-----------h~~~V~~l~~~~----~~~~l~s 270 (501)
++...|+.+..||.+....... .. ... +.+ -.+.+..++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566778888888887765432 11 000 000 123455566666 6689999
Q ss_pred EecCCeEEEEeCCCcceeEeeee
Q 010777 271 GSCDKTAIVWDVKTEEWKQQFEF 293 (501)
Q Consensus 271 ~s~D~~i~iwd~~~~~~~~~~~~ 293 (501)
-+.|+++|+||+.++.++.....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999998665543
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.60 E-value=82 Score=34.64 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=26.6
Q ss_pred ccceeEEEECCCC------CEEEEEECCCcEEEEecCC
Q 010777 153 TSEVCACAWSPAG------SLLASGSGDSTARIWTIAD 184 (501)
Q Consensus 153 ~~~V~~~~~sp~~------~~l~sgs~D~~i~iWd~~~ 184 (501)
...|.|+++.++. ++++.|+.|+++++..+..
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 4568899998875 4799999999999998763
No 467
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.22 E-value=44 Score=31.31 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=81.9
Q ss_pred eEEEEeCCCcceeEeeeeccCC------eE--EEecCCC-----ceEEEecCCCeEEEEEcCCCcceeeecCCC------
Q 010777 276 TAIVWDVKTEEWKQQFEFHSGP------TL--DVDWRNN-----VSFATSSTDNMIYVCKIGENRPIKTFAGHQ------ 336 (501)
Q Consensus 276 ~i~iwd~~~~~~~~~~~~~~~~------~~--~~~~~~~-----~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~------ 336 (501)
.|.+||+.+.+.++++.+.... .. .++..+. ..+++-+..+.|.|+++.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6788899888888877665332 22 2333322 345666667789999998876544433221
Q ss_pred -------------CceeEEEEcC---CCCEEEEEeCCCeEEEEeCCCC-----ce---------eeecccCCCCEEEEEE
Q 010777 337 -------------GEVNCVKWDP---TGSLLASCSDDVTAKIWNMKQD-----KY---------VHDLREHSKEIYTIRW 386 (501)
Q Consensus 337 -------------~~v~~v~~~~---~~~~l~s~s~Dg~i~iwd~~~~-----~~---------~~~~~~~~~~v~~i~~ 386 (501)
..+..++.+| +++.|.-+...+ -++|.+.+. .. +..+-........++.
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 1245555554 555555444332 123332211 00 0111011123344555
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC-----CeEEEEeeCC-CCCeEEEEECC--CCCEEEEE
Q 010777 387 SPTGSGTNNPNQQLILASASFDSTVKLWDVEL-----GKLLYSLNGH-REPVYSLAFSP--TGEYLASG 447 (501)
Q Consensus 387 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-----~~~~~~~~~h-~~~v~~l~~sp--dg~~lasg 447 (501)
++.|. +..+--..+.|..|+... ...+...... -..+.++++.+ +|.+.+..
T Consensus 194 D~~G~---------ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGN---------LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTE---------EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCc---------EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 55553 556666788899999875 2122222222 45778899988 77665554
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.94 E-value=28 Score=36.42 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=48.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEee
Q 010777 214 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 291 (501)
Q Consensus 214 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 291 (501)
-++++.-+|.|+-++++..||.|++|+........+.....|-..+.|...| |+++.+|+.+.-|. +.+...++|
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqqf 90 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQF 90 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcchhhc
Confidence 4677777899999999999999999986543221122222233445555443 77778888888885 334344444
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.95 E-value=7.2 Score=40.51 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=29.1
Q ss_pred CeEEEEECC----CCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 010777 431 PVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTY 467 (501)
Q Consensus 431 ~v~~l~~sp----dg~~lasgs~Dg~i~iw~~~~~~~~~~~ 467 (501)
.+..++.++ +..+|++.+.|++||+||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 456677777 6789999999999999999999986654
No 470
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.85 E-value=10 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=25.9
Q ss_pred cEEEEEEeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEE
Q 010777 399 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 437 (501)
Q Consensus 399 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 437 (501)
+.++++.-.++.|.++|..+++.+..+.-... -..++|
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 34566666789999999998888877664322 234444
No 471
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.68 E-value=62 Score=31.97 Aligned_cols=145 Identities=13% Similarity=0.162 Sum_probs=78.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 339 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 339 v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
...+..++++.+++.+..-..++-||--..-....-......++.+.|.+++. +++ .+..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~---------l~l-~g~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG---------LWL-LTRGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC---------EEE-EeCCceEEE-ecCC
Confidence 44556678887777665544444454321100111122345678888888875 333 335566533 3333
Q ss_pred Ce-----EEEEeeC--CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe--c--CCCEEEEEECCCCCEEEE
Q 010777 419 GK-----LLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--G--NGGIFEVCWNKEGDKIAA 487 (501)
Q Consensus 419 ~~-----~~~~~~~--h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~--~--~~~i~~~~ws~~g~~la~ 487 (501)
++ ....+.. -...++++.|.+++..+++| ..|.+.... ..|+.=.... . ...++.+.|.++++.+++
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 33 2222221 12358999999888866655 567666553 3443211111 1 245889999888766665
Q ss_pred EECCCeEEEE
Q 010777 488 CFANHTVCVL 497 (501)
Q Consensus 488 ~~~d~~v~v~ 497 (501)
| .+|.|..|
T Consensus 388 G-~~G~il~~ 396 (398)
T PLN00033 388 G-NDGVLLRY 396 (398)
T ss_pred e-CCcEEEEe
Confidence 5 45665443
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=80.47 E-value=93 Score=33.90 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=24.0
Q ss_pred ceeEEEEcCC-CCEEEEEeCCCeEEEEeC
Q 010777 338 EVNCVKWDPT-GSLLASCSDDVTAKIWNM 365 (501)
Q Consensus 338 ~v~~v~~~~~-~~~l~s~s~Dg~i~iwd~ 365 (501)
+...++|+|. ...||.....|...||++
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEe
Confidence 5667999985 467999999999999998
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=79.36 E-value=65 Score=31.43 Aligned_cols=191 Identities=14% Similarity=0.100 Sum_probs=95.1
Q ss_pred EEEEEecCCeEEEEeCCCcceeEeeeec------cCCeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCC-Cce
Q 010777 267 YLLTGSCDKTAIVWDVKTEEWKQQFEFH------SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEV 339 (501)
Q Consensus 267 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v 339 (501)
.++.+..+|.|.-.|..++..+-..... .+++. ..+..+..++.++.++.++..++..+-.+.... -.+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~----~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPIL----GSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceE----EeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 3444566777777777666533211111 11111 113446667777788888887666655554333 112
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeC--CCeEEEEeCC
Q 010777 340 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVE 417 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~--dg~i~iwd~~ 417 (501)
.......++. +..++.++.+...+..++..+-........-..+.-+|... .. .+..+.. ++.+.-.|..
T Consensus 146 ~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~-----~~--~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 146 ASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA-----SG--TVYVGSDGYDGILYALNAE 217 (370)
T ss_pred ecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee-----cc--eEEEecCCCcceEEEEEcc
Confidence 2222222333 33333678887777777766443222110000000011100 00 2333444 5667777888
Q ss_pred CCeEEEEeeCCC----CCeEEEEECCC-----CCEEEEEeCCCcEEEEeCCCCeeEEEEec
Q 010777 418 LGKLLYSLNGHR----EPVYSLAFSPT-----GEYLASGSLDKSMHIWSLKEGKIVKTYTG 469 (501)
Q Consensus 418 ~~~~~~~~~~h~----~~v~~l~~spd-----g~~lasgs~Dg~i~iw~~~~~~~~~~~~~ 469 (501)
+|......+.+. ..+.....-.. +.-+..++.++.+...+..+|+.+..++.
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 888877643221 11100111111 12235667788899999999998877765
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.90 E-value=62 Score=30.96 Aligned_cols=142 Identities=21% Similarity=0.324 Sum_probs=78.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCe------EEEEeCCC--C--cee-----eecccCCC--------CEEEEEEcCCCCCC
Q 010777 337 GEVNCVKWDPTGSLLASCSDDVT------AKIWNMKQ--D--KYV-----HDLREHSK--------EIYTIRWSPTGSGT 393 (501)
Q Consensus 337 ~~v~~v~~~~~~~~l~s~s~Dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~v~~i~~~p~g~~~ 393 (501)
+.+..+.+.|++..+++.+++|. +..+.+.. + ..+ ..++...+ -.-+|++.+++.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-- 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence 45678888876666777777777 54444432 1 001 11111111 122455544443
Q ss_pred CCCCCcEEEEEEeCC------CeEEEEeCCCCeEEEEee---------------CCCCCeEEEEECCCCCEEEEEeC---
Q 010777 394 NNPNQQLILASASFD------STVKLWDVELGKLLYSLN---------------GHREPVYSLAFSPTGEYLASGSL--- 449 (501)
Q Consensus 394 ~~~~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~---------------~h~~~v~~l~~spdg~~lasgs~--- 449 (501)
++++.-.+ ..|+-++.. |+.+..+. ......-+|+++|+|+.|.++..
T Consensus 98 -------~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l 169 (326)
T PF13449_consen 98 -------FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL 169 (326)
T ss_pred -------EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence 44444445 678788766 55543321 12346789999999996655432
Q ss_pred --CC-----------cEEEEeCCC-CeeEE--EE--e------cCCCEEEEEECCCCCEEEEE
Q 010777 450 --DK-----------SMHIWSLKE-GKIVK--TY--T------GNGGIFEVCWNKEGDKIAAC 488 (501)
Q Consensus 450 --Dg-----------~i~iw~~~~-~~~~~--~~--~------~~~~i~~~~ws~~g~~la~~ 488 (501)
|+ .|..|+..+ +.... .| . ....+.++++-+++++|+.-
T Consensus 170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 244455544 32222 22 2 23468899999999987764
No 475
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=78.17 E-value=95 Score=32.86 Aligned_cols=156 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeCCC----eEEEEeCCCCceeeecccCCCCEEEEEEcCCCC
Q 010777 316 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 391 (501)
Q Consensus 316 ~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~ 391 (501)
..+++.+... ..+..+...+..+.|+|+|..++..+.++ .+.+.+.. + .+..+...+....|+|.+.
T Consensus 43 ~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~ 113 (620)
T COG1506 43 SSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGD 113 (620)
T ss_pred cceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCC
Q ss_pred CCCCCCCcEEEEE---------------------------EeCCCeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEE
Q 010777 392 GTNNPNQQLILAS---------------------------ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 444 (501)
Q Consensus 392 ~~~~~~~~~~l~s---------------------------gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l 444 (501)
.++. +.....+.+.|... ...........+...++++++..+
T Consensus 114 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 182 (620)
T COG1506 114 ---------RIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLV 182 (620)
T ss_pred ---------eEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc--ccccccCCCCceeeeeeCCCCcee
Q ss_pred EEEeCCCc-------EEEEeCCCCeeEEEEecCCCEEEEEECCCCCEEEEEECC
Q 010777 445 ASGSLDKS-------MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 491 (501)
Q Consensus 445 asgs~Dg~-------i~iw~~~~~~~~~~~~~~~~i~~~~ws~~g~~la~~~~d 491 (501)
+....+.. ..++...++.+.....+...+..+.|.++|+.++.....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 183 ASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred EEeeeccccCCceEeeEEEecCCCceEEEcCCCceeeeeeeCCCCCeeEEeccC
No 476
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=76.87 E-value=91 Score=31.75 Aligned_cols=150 Identities=17% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCCEEEEE---eCCCeEEEEECCCceeEeecCCCCCEEEEEecCCCCEEEEEecCCeEEEEeCCCcceeEeeeeccCC--
Q 010777 223 EGTLLATG---SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-- 297 (501)
Q Consensus 223 ~~~~l~sg---~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-- 297 (501)
++-+|+++ ...+...+.|.+|.....+.........+...++|++++..+ ..++.+|+. |+.+..+....+.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 44556665 345667777777776655433222211156678888776554 778888874 3343333332211
Q ss_pred -eEEEecCCC-ceEEEe-----------------------cCCCeEEEEEcCCCc-ceee----------ecC---CC--
Q 010777 298 -TLDVDWRNN-VSFATS-----------------------STDNMIYVCKIGENR-PIKT----------FAG---HQ-- 336 (501)
Q Consensus 298 -~~~~~~~~~-~~~~~~-----------------------~~d~~i~~~~~~~~~-~~~~----------~~~---h~-- 336 (501)
-.++...++ ..++.+ .....++.|++..-- +... ..+ ..
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 112222221 222211 222344555553311 1110 000 01
Q ss_pred CceeEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeeecc
Q 010777 337 GEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR 375 (501)
Q Consensus 337 ~~v~~v~~~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 375 (501)
--++++.+.+ ++.+++|+-.-..|...|.++++..-.+-
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 1378999998 55666666555588888877776654443
No 477
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.55 E-value=6.3 Score=22.58 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEE
Q 010777 443 YLASGSLDKSMHIWSLKEGKIVKTY 467 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~~~~~~~~~ 467 (501)
.++.++.+|.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999887653
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.37 E-value=24 Score=34.65 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=89.0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCceeE--ee-cCCCC----CEE-EEEecCCCCEEEEEecCCeEEEE-eC
Q 010777 212 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC--TL-SKHKG----PIF-SLKWNKKGDYLLTGSCDKTAIVW-DV 282 (501)
Q Consensus 212 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~--~~-~~h~~----~V~-~l~~~~~~~~l~s~s~D~~i~iw-d~ 282 (501)
..+|..+-..|||+.+..-+. ..+.|++....... .+ ....+ .|+ .+..-..|..|+.++.||-|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 345777778999998877665 67788876543221 11 11111 122 12223456678999999999999 44
Q ss_pred CCcc-----eeEeeeeccCCeEEEecC-CCceEEEecCCCeEEEEEcCCCcceeeecCCCCceeEEEEcCCCCEEEEEeC
Q 010777 283 KTEE-----WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 356 (501)
Q Consensus 283 ~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~s~ 356 (501)
+... .++.+.....++..+... +...|++-...|++.++.....+++..-. --..+.-+++||.+.++++- +
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e-~ 376 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSE-D 376 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheee-c
Confidence 4321 122222222233333332 33456777777777766554444432211 12245668999999988754 4
Q ss_pred CCeEEEEeCCCCce
Q 010777 357 DVTAKIWNMKQDKY 370 (501)
Q Consensus 357 Dg~i~iwd~~~~~~ 370 (501)
.|.|+++.+.+..+
T Consensus 377 ~gki~~~~l~Nr~P 390 (733)
T COG4590 377 QGKIRLAQLENRNP 390 (733)
T ss_pred CCceEEEEecCCCC
Confidence 57899998776544
No 479
>PRK13613 lipoprotein LpqB; Provisional
Probab=75.34 E-value=1.1e+02 Score=32.06 Aligned_cols=156 Identities=12% Similarity=0.058 Sum_probs=79.1
Q ss_pred ecCCCC-ceeEEEEcCCCCEEEEEeCCC-eEEEEeCCCCce----e-eecccCCCCEEEEEEcCCCCCCCCCCCcEEEEE
Q 010777 332 FAGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKY----V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 404 (501)
Q Consensus 332 ~~~h~~-~v~~v~~~~~~~~l~s~s~Dg-~i~iwd~~~~~~----~-~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~s 404 (501)
..++.. .+.+++.++++..+|..+.++ .+.+..+..+.. . ..+. ...++.-.|.+.+. .+.+-
T Consensus 357 ~~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~--------vWtvd 426 (599)
T PRK13613 357 ALGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGD--------LWVVD 426 (599)
T ss_pred ccCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCC--------EEEec
Confidence 334444 678899999999988777666 455544322221 0 0111 12233344544442 22221
Q ss_pred EeCCC--eEEEEeCCCCeEEE-EeeCCCC-CeEEEEECCCCCEEEEEeC---CCcEEEEeCC---CCe-eEE---EE-ec
Q 010777 405 ASFDS--TVKLWDVELGKLLY-SLNGHRE-PVYSLAFSPTGEYLASGSL---DKSMHIWSLK---EGK-IVK---TY-TG 469 (501)
Q Consensus 405 gs~dg--~i~iwd~~~~~~~~-~~~~h~~-~v~~l~~spdg~~lasgs~---Dg~i~iw~~~---~~~-~~~---~~-~~ 469 (501)
++.++ .+++..- .++... ......+ .|..+..|+||-.+|.-.. .++|.|=-+. .|. .+. .+ ..
T Consensus 427 ~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~ 505 (599)
T PRK13613 427 RDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE 505 (599)
T ss_pred CCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC
Confidence 21122 2444432 333321 1112223 7999999999987665332 3455554432 332 111 11 22
Q ss_pred CCCEEEEEECCCCCEEEEEE-CCCeEEEEE
Q 010777 470 NGGIFEVCWNKEGDKIAACF-ANHTVCVLD 498 (501)
Q Consensus 470 ~~~i~~~~ws~~g~~la~~~-~d~~v~v~~ 498 (501)
...+.+++|..++..++.+. .++..-||-
T Consensus 506 l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~ 535 (599)
T PRK13613 506 LEDVTDMSWAGDSQLVVLGREEGGVQQARY 535 (599)
T ss_pred CCccceeEEcCCCEEEEEeccCCCCcceEE
Confidence 34588999999998877663 333444443
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.14 E-value=51 Score=37.01 Aligned_cols=143 Identities=17% Similarity=0.313 Sum_probs=84.6
Q ss_pred EeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCC----CCeE-----EEE
Q 010777 354 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKL-----LYS 424 (501)
Q Consensus 354 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~----~~~~-----~~~ 424 (501)
-+-|+.+.+|+..++.....+.+....|..|..-..-.+.+.|.-+++|+.+. --.|.|+-+. ++.. .++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence 35588899999998777777777677777776544444455555444444443 2235554332 1111 122
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeC----CCC---e--------------eEEEE---e--cCCCEEEEEE
Q 010777 425 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL----KEG---K--------------IVKTY---T--GNGGIFEVCW 478 (501)
Q Consensus 425 ~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~----~~~---~--------------~~~~~---~--~~~~i~~~~w 478 (501)
+.-....|++|....+|+.+.+|- || .+|.+ ..| + ++.++ . ...+|..++.
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 333345689999888998777665 55 44543 111 1 11111 1 1235677777
Q ss_pred CCCCCEEEEEECCCeEEEEEee
Q 010777 479 NKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 479 s~~g~~la~~~~d~~v~v~~~~ 500 (501)
...-+.|.+-+.-++|.+|++-
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred ccccceeeeeccCceEEEEEcc
Confidence 7766788888888999999873
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=73.49 E-value=1.3e+02 Score=32.07 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCCCEEEEEecCCCCEEEEEecCCeEEEEe
Q 010777 252 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 281 (501)
Q Consensus 252 h~~~V~~l~~~~~~~~l~s~s~D~~i~iwd 281 (501)
-.+.|...+|+.+.+.++....+..|.+++
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 456678889999998777777778888775
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=73.01 E-value=48 Score=26.80 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=64.5
Q ss_pred EEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECC-----CCCEEEEEeC
Q 010777 158 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-----EGTLLATGSY 232 (501)
Q Consensus 158 ~~~~sp~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-----~~~~l~sg~~ 232 (501)
.-.|.....-|+.++.-|+|.|++..........+..++..+.+ .+.|++|+-.+ ....|+.|+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----------n~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI----------NQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC----------CCceEEEEEEecCCCCCcCEEEEecc
Confidence 34566666678888888999999876443222212222222221 34577775332 3455666665
Q ss_pred CCeEEEEECCCceeEeecCCCCCEEEEEec---CCCCEEEEEecCCeEEEEeCCCcc
Q 010777 233 DGQARIWSTNGDLKCTLSKHKGPIFSLKWN---KKGDYLLTGSCDKTAIVWDVKTEE 286 (501)
Q Consensus 233 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~---~~~~~l~s~s~D~~i~iwd~~~~~ 286 (501)
..+..||+....-...+.-.+.|.++.+- ....-|+..+....|.-+|....+
T Consensus 73 -t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 73 -TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred -ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 57889997654333333344556666552 222234444445677777755443
No 483
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=72.86 E-value=9.1 Score=21.26 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEE
Q 010777 473 IFEVCWNKEGDKIAACFANHTVCVL 497 (501)
Q Consensus 473 i~~~~ws~~g~~la~~~~d~~v~v~ 497 (501)
+..++.+++|+.+++=+.+..|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4677888888888888888888765
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=72.73 E-value=99 Score=30.83 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=18.8
Q ss_pred CEEEEEECCCCCEEEEEECCCeEEEEEee
Q 010777 472 GIFEVCWNKEGDKIAACFANHTVCVLDFR 500 (501)
Q Consensus 472 ~i~~~~ws~~g~~la~~~~d~~v~v~~~~ 500 (501)
.|..++..+..+.|.+...++.|.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 36667776666777777777777777763
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.72 E-value=52 Score=30.66 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=51.5
Q ss_pred CeEEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEe------CCCcEEEEeCCCCeeEEEEec-----CCCEEEEE
Q 010777 409 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGKIVKTYTG-----NGGIFEVC 477 (501)
Q Consensus 409 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs------~Dg~i~iw~~~~~~~~~~~~~-----~~~i~~~~ 477 (501)
..|.+||..+.+=..--.+-.+.|++|.|..+.+++++|. ....+..||+.+......-.+ .+.+..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4588999876543333334557799999997777888775 345788999887653222111 24566666
Q ss_pred EC-CCC-CEEEEEE-CCCeE
Q 010777 478 WN-KEG-DKIAACF-ANHTV 494 (501)
Q Consensus 478 ws-~~g-~~la~~~-~d~~v 494 (501)
+. .|+ +..++|. .++..
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~ 115 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGST 115 (281)
T ss_pred eeccCCceEEEeceecCCCc
Confidence 53 244 3554543 44433
No 486
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.35 E-value=10 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEecC
Q 010777 443 YLASGSLDKSMHIWSLKEGKIVKTYTGN 470 (501)
Q Consensus 443 ~lasgs~Dg~i~iw~~~~~~~~~~~~~~ 470 (501)
.+..++.+|.|.-.|.++|+++..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3555689999999999999999888654
No 487
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.34 E-value=0.52 Score=45.99 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=86.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCC
Q 010777 339 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 418 (501)
Q Consensus 339 v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 418 (501)
.....|-|.+.-++.++.+..+..||-..... ... ..++....++|..++.. .++.+-..+.+.+||+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~-n~tg~aldm~wDkegdv--------lavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LEL-NPTGKALDMAWDKEGDV--------LAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhccee-ccc-CCchhHhhhhhccccch--------hhhhhhcCCCeeechhhh
Confidence 34567888887788888888888888543322 221 22344455677665542 445566788999999864
Q ss_pred CeE-EEEeeC-CCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEEe-cCCCEEEEEECCCCCEE
Q 010777 419 GKL-LYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKI 485 (501)
Q Consensus 419 ~~~-~~~~~~-h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~~-~~~~i~~~~ws~~g~~l 485 (501)
..- -..+.+ |.... +.|++.+..++.|-..|.+.|++-.+.+.+-..- +-..++.++|.+.+..+
T Consensus 107 eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 107 EYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred hhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 321 111221 22222 6899999999999999999999977654332222 33468899999987443
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=69.53 E-value=1.2e+02 Score=29.73 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=95.4
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceEEEEEeeccccccCCCCeEEEEECCCCCEEEEEeC-C---CeEEE
Q 010777 163 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-D---GQARI 238 (501)
Q Consensus 163 p~~~~l~sgs~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~-d---g~i~i 238 (501)
|...+++...+.+-+.+||+............+.++-. ...+.+...-.-|+.++. + ..|++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDv--------------rygf~l~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDV--------------RYGFPLNGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEE--------------EEEEEETTEEEEEEEEEE-CCCT-EEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeee--------------ecceecCCceEEEEEEecCcCCCCeEEE
Confidence 34567888888899999998643211111111111111 112222211111334432 2 46899
Q ss_pred EECCC--ceeEeecC-------CCCCEEEEEec--C-CCC-EEEEEecCCeEEEEeCC---Cc----ceeEeeeeccCCe
Q 010777 239 WSTNG--DLKCTLSK-------HKGPIFSLKWN--K-KGD-YLLTGSCDKTAIVWDVK---TE----EWKQQFEFHSGPT 298 (501)
Q Consensus 239 w~~~~--~~~~~~~~-------h~~~V~~l~~~--~-~~~-~l~s~s~D~~i~iwd~~---~~----~~~~~~~~~~~~~ 298 (501)
|.+.. .....+.. --..++++|+- | +|. |++....+|.+..|-+. .+ +.++.|.....+-
T Consensus 132 f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E 211 (381)
T PF02333_consen 132 FRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE 211 (381)
T ss_dssp EEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE
T ss_pred EEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce
Confidence 97643 22222211 12347888873 3 343 67778889999888764 22 2345554433222
Q ss_pred EEEecCCCceEEEecCCCeEEEEEcCCCc-----ceeeecC--CCCceeEEEEc--CCC--CEEEEEeCCCeEEEEeCCC
Q 010777 299 LDVDWRNNVSFATSSTDNMIYVCKIGENR-----PIKTFAG--HQGEVNCVKWD--PTG--SLLASCSDDVTAKIWNMKQ 367 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-----~~~~~~~--h~~~v~~v~~~--~~~--~~l~s~s~Dg~i~iwd~~~ 367 (501)
-++.=.....+..+-.+.-|+.++..... .+....+ ....|-.|++- .++ -+|+|.-.+++..||+...
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 22222334456667777777777775322 1212222 23567777764 333 3566666788999999764
No 489
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=68.84 E-value=1.1e+02 Score=29.00 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=48.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeeecccCCCCEEE-----EEEcCCCCCCCCCCCcEEEEEEeCCCeEE
Q 010777 338 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT-----IRWSPTGSGTNNPNQQLILASASFDSTVK 412 (501)
Q Consensus 338 ~v~~v~~~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~v~~-----i~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 412 (501)
-+++|...++|.+|+|.-.-.+|.+.|-.+++.+-.+.+....-.. .+|..+- .++-.+..++.|.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHda---------r~~~~~~~~~~Is 215 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDA---------RFLNESNDDGTIS 215 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCC---------EEeccCCCCCEEE
Confidence 3788898999999999999999999998888887776554221111 2221111 2344445678888
Q ss_pred EEeCC
Q 010777 413 LWDVE 417 (501)
Q Consensus 413 iwd~~ 417 (501)
|+|-.
T Consensus 216 lFDN~ 220 (299)
T PF14269_consen 216 LFDNA 220 (299)
T ss_pred EEcCC
Confidence 88863
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.60 E-value=77 Score=35.69 Aligned_cols=136 Identities=15% Similarity=0.260 Sum_probs=81.9
Q ss_pred cCCCeEEEEEcCCCcceeeecCCCCceeEEEE--------cCCCCEEEEEeCCCeEEEEeCC----CCce---e--eecc
Q 010777 313 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKW--------DPTGSLLASCSDDVTAKIWNMK----QDKY---V--HDLR 375 (501)
Q Consensus 313 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~--------~~~~~~l~s~s~Dg~i~iwd~~----~~~~---~--~~~~ 375 (501)
+.|+.+++|+...+.....+.+-...|..|.. .|.=+++..-..--.|.|+-+. ++.. . ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45788999999887777777776666766653 2222333333333445555332 1110 0 1112
Q ss_pred cCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeC----CCC---e-E----------------EEEee-CCCC
Q 010777 376 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV----ELG---K-L----------------LYSLN-GHRE 430 (501)
Q Consensus 376 ~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~----~~~---~-~----------------~~~~~-~h~~ 430 (501)
...-.|.++....+|. ++ -++.||. +|.+ ..+ + + +..+. .+..
T Consensus 176 ~dg~~V~~I~~t~nGR---------IF-~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR---------IF-FAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cCCceEEEEEeccCCc---------EE-EeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 2344577777667775 34 4556664 4432 111 1 1 11233 5677
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010777 431 PVYSLAFSPTGEYLASGSLDKSMHIWSLKE 460 (501)
Q Consensus 431 ~v~~l~~spdg~~lasgs~Dg~i~iw~~~~ 460 (501)
+|..|+.....+.|.+-+..|+|.+|++..
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccC
Confidence 999999999989999999999999999976
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=66.63 E-value=38 Score=25.05 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCcEEEEeCCC
Q 010777 430 EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE 460 (501)
Q Consensus 430 ~~v~~l~~spdg~~lasgs-~Dg~i~iw~~~~ 460 (501)
..-+.|.++|++++|..++ ..+.|++|..++
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3458899999999886655 578999998653
No 492
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.09 E-value=16 Score=20.82 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEe
Q 010777 401 ILASASFDSTVKLWDVELGKLLYSL 425 (501)
Q Consensus 401 ~l~sgs~dg~i~iwd~~~~~~~~~~ 425 (501)
.+..++.+|.+..+|..+|+.++.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4566788999999999999887764
No 493
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=66.00 E-value=1.3e+02 Score=28.85 Aligned_cols=118 Identities=11% Similarity=0.157 Sum_probs=68.8
Q ss_pred CccceeEEEECCCCCEEEEEECCCc------EEEEecCCCCCCCCCCCCCceE---EEEEeeccc-cccCCCCeEEEEEC
Q 010777 152 HTSEVCACAWSPAGSLLASGSGDST------ARIWTIADGTSNGGAQNGPLNV---LVLKHVKGR-TNEKSKDVTTLDWN 221 (501)
Q Consensus 152 H~~~V~~~~~sp~~~~l~sgs~D~~------i~iWd~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~V~~~~~s 221 (501)
.-+++.++.+.|++..+++-|.+|. +....+..... ....+.. ..++...+. .....-..-+|++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG----GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP 93 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC----CccceEeccceeccCCCCCcCCcCCCChhHeEEe
Confidence 3467899999987777777788777 55555433100 0001111 111111110 00111245578888
Q ss_pred CCCCEEEEEeCC------CeEEEEECCCceeEee---------------cCCCCCEEEEEecCCCCEEEEEec
Q 010777 222 GEGTLLATGSYD------GQARIWSTNGDLKCTL---------------SKHKGPIFSLKWNKKGDYLLTGSC 273 (501)
Q Consensus 222 ~~~~~l~sg~~d------g~i~iw~~~~~~~~~~---------------~~h~~~V~~l~~~~~~~~l~s~s~ 273 (501)
++|.++++--.+ ..|+-++..+.....+ ...+...-+|+++|+|+.|+++..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 899999888777 7888888776543222 113345788999999997776654
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=65.49 E-value=19 Score=32.67 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=46.9
Q ss_pred EEEEeCCCCeEEEEeeCCCCCeEEEEECCCCCEEEEEeC-C--CcEEEEeCCC----CeeE---EEEecCCCEEEEEECC
Q 010777 411 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-D--KSMHIWSLKE----GKIV---KTYTGNGGIFEVCWNK 480 (501)
Q Consensus 411 i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~lasgs~-D--g~i~iw~~~~----~~~~---~~~~~~~~i~~~~ws~ 480 (501)
-.+||+.+++...--......+.+-+|-|||++|.+||. + ..|++|+..+ .... ..+......-++.--|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 356888776543221112223344567899999999885 3 3588888654 1111 1112222334556678
Q ss_pred CCCEEEEEECC
Q 010777 481 EGDKIAACFAN 491 (501)
Q Consensus 481 ~g~~la~~~~d 491 (501)
||+.|+.|+..
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 99999888765
No 495
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=65.04 E-value=19 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=20.0
Q ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEe
Q 010777 431 PVYSLAFSPTGEYLASGSLDKSMHIWS 457 (501)
Q Consensus 431 ~v~~l~~spdg~~lasgs~Dg~i~iw~ 457 (501)
.|.+|+.++. +++.+..-+.+++|.
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 4778887665 889888889999984
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=63.98 E-value=22 Score=37.65 Aligned_cols=134 Identities=14% Similarity=0.103 Sum_probs=71.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCc--e--eeecccCCCCEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEEEeCCCCeEEEE
Q 010777 349 SLLASCSDDVTAKIWNMKQDK--Y--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 424 (501)
Q Consensus 349 ~~l~s~s~Dg~i~iwd~~~~~--~--~~~~~~~~~~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 424 (501)
..+..|+.++.|.|+.-..+. . ..........+.++.+++..-+...+++........-+|+ ||.. +-..
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gS---wd~e---p~~~ 621 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGS---WDGE---PNIS 621 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCC---CCCC---Cccc
Confidence 456788899999998755221 1 1111222334555555543221111111111111222332 5544 2222
Q ss_pred eeCCCCCeEEEEECCCCCEEEEEeCCCcEEEEeCCCCeeEEEE----ecCCCEEEEEECCCCCEEEEEECC
Q 010777 425 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TGNGGIFEVCWNKEGDKIAACFAN 491 (501)
Q Consensus 425 ~~~h~~~v~~l~~spdg~~lasgs~Dg~i~iw~~~~~~~~~~~----~~~~~i~~~~ws~~g~~la~~~~d 491 (501)
+.....+|.+++|..| ++.|+.+|.|.++...+....+.. .....|+++.....|=++|.++.+
T Consensus 622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC
Confidence 2334568889998776 556778999999998775443333 223457888877666566555544
No 497
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=63.24 E-value=1.5e+02 Score=28.82 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=73.5
Q ss_pred CCCEEEEEecCCeEEEEeCCCcceeEeeeeccC-CeEEEecCCCceEEEecCCCeEEEEEcCCCcceeeecCCC---Cce
Q 010777 264 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---GEV 339 (501)
Q Consensus 264 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~---~~v 339 (501)
+|+ ++.++.++.+...|..+++..-.+..... ....-....+..+...+.++.++..+..++...-.+..-. ..+
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 554 88888899899999888877666554440 0000001112222223355666666555444332211100 001
Q ss_pred eEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeeecccCCC----CEEEEEEcCCCCCCCCCCCcEEEEEEeCCCeEEE
Q 010777 340 NCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 413 (501)
Q Consensus 340 ~~v~~~~~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~----~v~~i~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 413 (501)
..--...++. +..+.. ++.+.-.|..++...-..+.+.. .+........+.. .-+. -+..++.++.+..
T Consensus 190 ~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v--~v~~--~~~~~~~~g~~~~ 264 (370)
T COG1520 190 YGSPAIASGT-VYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPV--YVDG--GVYAGSYGGKLLC 264 (370)
T ss_pred ccCceeecce-EEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceE--EECC--cEEEEecCCeEEE
Confidence 0000012333 333333 45555556666655433211110 0000000000000 0000 1356777888999
Q ss_pred EeCCCCeEEEEeeCC
Q 010777 414 WDVELGKLLYSLNGH 428 (501)
Q Consensus 414 wd~~~~~~~~~~~~h 428 (501)
.|..+++.++.....
T Consensus 265 l~~~~G~~~W~~~~~ 279 (370)
T COG1520 265 LDADTGELIWSFPAG 279 (370)
T ss_pred EEcCCCceEEEEecc
Confidence 999999999888753
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=63.14 E-value=1.3e+02 Score=28.05 Aligned_cols=132 Identities=12% Similarity=0.206 Sum_probs=73.0
Q ss_pred CCeEEEEeCCCcceeEeeeeccCCeEEEecCCC-ceEEEec------CCCeEEEEEcCCCcceeeecCC-----CCceeE
Q 010777 274 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSS------TDNMIYVCKIGENRPIKTFAGH-----QGEVNC 341 (501)
Q Consensus 274 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~d~~i~~~~~~~~~~~~~~~~h-----~~~v~~ 341 (501)
-..|.+||..+.+|...-..-.+.|.++.|.++ ..++.+. ....+..|+..... ...+.+- .++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 346899999988887766666778899998644 4444432 34456677776543 2223331 367777
Q ss_pred EEEcC-CC-CEEEEEe-CCC--eEEEEeCCCCceeee-cccCCCCEEEEEEcCC-C----CCCCCCCCcEEEEEEe
Q 010777 342 VKWDP-TG-SLLASCS-DDV--TAKIWNMKQDKYVHD-LREHSKEIYTIRWSPT-G----SGTNNPNQQLILASAS 406 (501)
Q Consensus 342 v~~~~-~~-~~l~s~s-~Dg--~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~p~-g----~~~~~~~~~~~l~sgs 406 (501)
+.+.. |+ ++++.|. .+| .|..||-.+...+.. .......|..+.+-|- . ........+.+|++|.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~~~~Llv~G~ 169 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDSDQVLLVTGS 169 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEeccccccccccccCCCcEEEEEee
Confidence 76632 33 3444443 333 466676555544433 2233456666665554 1 1111223455666665
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.74 E-value=2.7e+02 Score=31.46 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.9
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEec
Q 010777 155 EVCACAWSPAGSLLASGSGDSTARIWTI 182 (501)
Q Consensus 155 ~V~~~~~sp~~~~l~sgs~D~~i~iWd~ 182 (501)
....++|+|.-+++|-|...|.|+++-.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecc
Confidence 4567899999999999999999999964
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.68 E-value=24 Score=21.16 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=21.9
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEeeC
Q 010777 402 LASASFDSTVKLWDVELGKLLYSLNG 427 (501)
Q Consensus 402 l~sgs~dg~i~iwd~~~~~~~~~~~~ 427 (501)
+..++.+|.|.-.|.++|+.++.++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 34558999999999999999988763
Done!