Query 010778
Match_columns 501
No_of_seqs 216 out of 482
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:03:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 100.0 6.9E-31 2.4E-35 231.7 8.9 102 203-304 6-108 (119)
2 2bl5_A MGC83862 protein, quaki 99.9 4.5E-28 1.5E-32 219.3 -0.8 101 209-309 2-115 (140)
3 1k1g_A SF1-BO isoform; splicin 99.9 1.1E-25 3.9E-30 200.8 5.4 98 207-304 5-111 (131)
4 3krm_A Insulin-like growth fac 99.4 4.6E-12 1.6E-16 113.0 11.8 147 117-300 14-161 (163)
5 2jvz_A KH type-splicing, FAR u 99.3 2.5E-11 8.4E-16 107.8 14.6 156 105-297 3-162 (164)
6 2jzx_A Poly(RC)-binding protei 99.2 8.1E-11 2.8E-15 104.7 9.6 153 103-294 4-158 (160)
7 1j4w_A FUSE binding protein; s 99.1 3.7E-10 1.3E-14 102.1 11.6 147 117-293 14-174 (174)
8 2anr_A Neuro-oncological ventr 99.1 2.1E-10 7.2E-15 103.9 9.1 159 104-294 6-174 (178)
9 2opv_A KHSRP protein; KH domai 98.9 3.6E-09 1.2E-13 86.6 7.4 71 209-294 14-84 (85)
10 1x4m_A FAR upstream element bi 98.7 1.2E-08 4.2E-13 85.2 5.6 73 207-294 13-85 (94)
11 1zzk_A Heterogeneous nuclear r 98.7 1.4E-08 4.9E-13 82.6 5.4 73 208-297 6-78 (82)
12 1x4n_A FAR upstream element bi 98.7 1.8E-08 6.2E-13 83.8 4.9 72 208-296 14-85 (92)
13 1dtj_A RNA-binding neurooncolo 98.6 3.2E-08 1.1E-12 78.8 5.5 71 210-294 4-74 (76)
14 2hh3_A KH-type splicing regula 98.6 3.4E-08 1.2E-12 85.0 5.9 70 210-296 12-81 (106)
15 1j5k_A Heterogeneous nuclear r 98.6 2E-08 6.7E-13 83.1 3.8 75 208-299 13-87 (89)
16 2e3u_A PH-DIM2P, hypothetical 98.6 2.6E-08 9E-13 95.6 4.7 148 106-295 36-191 (219)
17 2hh2_A KH-type splicing regula 98.6 5.1E-08 1.7E-12 83.5 5.5 72 210-295 8-79 (107)
18 2ctm_A Vigilin; K homology typ 98.6 5.3E-08 1.8E-12 82.1 5.3 77 208-302 16-92 (95)
19 2cte_A Vigilin; K homology typ 98.6 4.2E-08 1.4E-12 82.1 4.6 70 209-297 17-86 (94)
20 2ctl_A Vigilin; K homology typ 98.5 1.1E-07 3.8E-12 80.3 6.6 76 209-300 17-92 (97)
21 1ec6_A RNA-binding protein NOV 98.5 7E-08 2.4E-12 79.2 5.1 76 210-299 4-79 (87)
22 1we8_A Tudor and KH domain con 98.5 9.1E-08 3.1E-12 81.3 5.7 73 209-296 15-87 (104)
23 1wvn_A Poly(RC)-binding protei 98.5 5.8E-08 2E-12 78.9 3.8 70 209-295 6-75 (82)
24 2dgr_A Ring finger and KH doma 98.5 6.9E-08 2.3E-12 79.9 4.3 66 208-293 9-74 (83)
25 2p2r_A Poly(RC)-binding protei 98.5 5.6E-08 1.9E-12 77.8 3.4 69 209-294 5-73 (76)
26 2ctk_A Vigilin; K homology typ 98.5 8.8E-08 3E-12 81.9 4.8 75 209-302 17-91 (104)
27 1vig_A Vigilin; RNA-binding pr 98.4 1.6E-07 5.6E-12 74.8 4.3 66 209-293 5-70 (71)
28 2axy_A Poly(RC)-binding protei 98.3 2E-07 6.9E-12 74.5 3.3 67 209-294 5-71 (73)
29 1tua_A Hypothetical protein AP 98.3 3.1E-07 1.1E-11 86.8 4.1 145 107-295 7-160 (191)
30 2qnd_A FMR1 protein; KH domain 98.3 2.5E-06 8.6E-11 76.3 9.5 137 104-296 4-143 (144)
31 2ctj_A Vigilin; K homology typ 98.0 2.5E-06 8.7E-11 72.1 3.8 69 209-296 17-86 (95)
32 2jvz_A KH type-splicing, FAR u 98.0 6E-06 2.1E-10 73.1 6.4 70 211-295 4-73 (164)
33 1j4w_A FUSE binding protein; s 98.0 3.5E-06 1.2E-10 76.0 4.2 71 210-297 4-74 (174)
34 2cpq_A FragIle X mental retard 97.9 2.8E-06 9.7E-11 72.1 1.1 64 209-293 15-79 (91)
35 2jzx_A Poly(RC)-binding protei 97.7 1.7E-05 5.9E-10 70.3 3.4 68 209-295 5-72 (160)
36 2anr_A Neuro-oncological ventr 97.7 2.6E-05 8.8E-10 70.5 4.3 72 209-294 6-77 (178)
37 3krm_A Insulin-like growth fac 97.7 2.9E-05 9.9E-10 69.1 4.4 69 211-295 5-73 (163)
38 2yqr_A KIAA0907 protein; struc 97.6 0.00012 4.2E-09 64.5 7.9 79 104-190 12-99 (119)
39 1k1g_A SF1-BO isoform; splicin 97.5 0.00015 5E-09 64.7 7.1 80 104-191 7-100 (131)
40 3u1k_A Polyribonucleotide nucl 97.4 5.8E-05 2E-09 82.2 3.5 62 210-293 568-629 (630)
41 2ctf_A Vigilin; K homology typ 97.1 0.0008 2.8E-08 57.3 6.5 71 209-301 27-98 (102)
42 4aid_A Polyribonucleotide nucl 96.9 0.00057 1.9E-08 75.7 4.7 91 225-347 580-670 (726)
43 2bl5_A MGC83862 protein, quaki 96.5 0.0039 1.3E-07 56.5 6.7 66 122-190 25-101 (140)
44 3n89_A Defective in GERM LINE 96.5 0.004 1.4E-07 64.3 7.0 72 209-293 186-259 (376)
45 2e3u_A PH-DIM2P, hypothetical 96.5 0.0018 6E-08 62.2 4.0 63 210-293 35-101 (219)
46 3n89_A Defective in GERM LINE 96.2 0.0021 7.3E-08 66.3 3.1 74 207-292 28-103 (376)
47 2qnd_A FMR1 protein; KH domain 96.1 0.0024 8.1E-08 57.0 2.8 61 209-289 4-64 (144)
48 1zzk_A Heterogeneous nuclear r 95.4 0.07 2.4E-06 43.0 8.5 70 104-191 7-77 (82)
49 1dtj_A RNA-binding neurooncolo 95.1 0.053 1.8E-06 42.6 6.8 71 105-190 4-75 (76)
50 2opv_A KHSRP protein; KH domai 94.9 0.11 3.7E-06 42.1 8.3 70 104-190 14-85 (85)
51 2p2r_A Poly(RC)-binding protei 94.7 0.05 1.7E-06 43.1 5.7 70 104-191 5-75 (76)
52 1wvn_A Poly(RC)-binding protei 94.6 0.06 2.1E-06 43.3 6.0 70 104-191 6-76 (82)
53 2hh2_A KH-type splicing regula 94.5 0.057 2E-06 45.9 5.8 73 106-193 9-82 (107)
54 1j5k_A Heterogeneous nuclear r 94.4 0.065 2.2E-06 43.9 5.8 72 102-191 12-84 (89)
55 1x4n_A FAR upstream element bi 94.4 0.066 2.3E-06 44.2 5.8 71 104-192 15-86 (92)
56 1x4m_A FAR upstream element bi 94.2 0.078 2.7E-06 43.9 5.9 74 102-191 13-87 (94)
57 1we8_A Tudor and KH domain con 94.2 0.23 8E-06 41.7 9.0 77 100-192 11-88 (104)
58 2hh3_A KH-type splicing regula 94.1 0.11 3.6E-06 44.5 6.7 69 106-192 13-82 (106)
59 2dgr_A Ring finger and KH doma 93.9 0.13 4.6E-06 42.1 6.8 67 104-191 10-77 (83)
60 1e3p_A Guanosine pentaphosphat 93.9 0.024 8.3E-07 63.1 3.0 93 225-347 608-700 (757)
61 2axy_A Poly(RC)-binding protei 93.6 0.11 3.8E-06 41.1 5.6 68 104-191 5-73 (73)
62 3cdi_A Polynucleotide phosphor 93.6 0.018 6.2E-07 63.8 1.3 54 225-294 570-623 (723)
63 3v69_A Protein filia; RNA-bind 93.6 0.081 2.8E-06 48.2 5.3 69 222-302 63-131 (140)
64 1vig_A Vigilin; RNA-binding pr 93.5 0.14 4.6E-06 40.5 5.9 65 104-188 5-70 (71)
65 2cte_A Vigilin; K homology typ 93.5 0.16 5.5E-06 42.1 6.5 68 104-191 17-85 (94)
66 4fxw_B Splicing factor 1; UHM, 92.6 0.081 2.8E-06 47.3 3.7 69 127-200 50-121 (124)
67 1ec6_A RNA-binding protein NOV 92.2 0.32 1.1E-05 39.4 6.5 70 107-191 6-76 (87)
68 2ctk_A Vigilin; K homology typ 92.1 0.22 7.4E-06 42.3 5.6 67 104-190 17-84 (104)
69 2ctm_A Vigilin; K homology typ 91.1 0.45 1.6E-05 39.7 6.4 69 104-191 17-86 (95)
70 2ctl_A Vigilin; K homology typ 90.9 0.74 2.5E-05 38.5 7.6 70 104-190 17-87 (97)
71 1tua_A Hypothetical protein AP 90.8 0.22 7.4E-06 47.1 4.7 68 210-298 5-76 (191)
72 2ctj_A Vigilin; K homology typ 87.5 0.58 2E-05 39.2 4.5 68 104-191 17-86 (95)
73 2ctf_A Vigilin; K homology typ 78.8 5.6 0.00019 33.6 7.0 64 104-190 27-92 (102)
74 2cpq_A FragIle X mental retard 65.4 2.7 9.2E-05 35.5 1.9 62 104-187 15-78 (91)
75 2z0s_A Probable exosome comple 43.8 22 0.00077 33.8 4.6 46 225-286 158-203 (235)
76 3u1k_A Polyribonucleotide nucl 40.6 18 0.0006 39.7 3.7 61 106-189 569-630 (630)
77 2cxc_A NUSA; transcription ter 34.0 7.9 0.00027 35.0 -0.2 27 226-252 47-73 (144)
78 4hhu_A OR280; engineered prote 33.2 82 0.0028 28.5 6.2 36 238-285 63-100 (170)
79 1wjw_A Phosphoacetylglucosamin 32.9 1.5E+02 0.005 25.1 7.6 50 235-299 45-96 (112)
80 2ba0_A Archeal exosome RNA bin 30.0 29 0.00099 33.1 2.9 50 224-289 145-196 (229)
81 3ldc_A Calcium-gated potassium 27.1 26 0.00089 27.8 1.7 15 399-414 43-57 (82)
82 2qn6_B Translation initiation 26.7 73 0.0025 26.7 4.5 43 137-191 41-84 (93)
83 4h33_A LMO2059 protein; bilaye 21.2 48 0.0016 28.8 2.4 15 399-414 58-72 (137)
84 3i38_A Putative chaperone DNAJ 21.0 80 0.0027 26.6 3.7 46 243-294 49-95 (109)
85 3eff_K Voltage-gated potassium 20.5 50 0.0017 28.3 2.3 15 399-414 55-69 (139)
86 3gpk_A PPIC-type peptidyl-prol 20.3 1E+02 0.0035 26.1 4.2 28 270-298 11-38 (112)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=6.9e-31 Score=231.67 Aligned_cols=102 Identities=37% Similarity=0.685 Sum_probs=98.6
Q ss_pred CCCcccceeEEEecCC-CCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 010778 203 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 281 (501)
Q Consensus 203 ~~g~k~~eeKI~Ipve-~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~ 281 (501)
..|++|+++|||||++ ++|+|||+|+||||+|+|+|+|++||||||.||||||+++|+.+++|++|||||+|+++++++
T Consensus 6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~ 85 (119)
T 2yqr_A 6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 85 (119)
T ss_dssp CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence 4577999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 010778 282 LEEAKRLAENLLDTISAECGASR 304 (501)
Q Consensus 282 v~~Ak~LiE~LL~tV~~E~~~~r 304 (501)
+++|++||++||.+++++|++|+
T Consensus 86 i~~A~~~Ie~Ll~~v~~~~~~~~ 108 (119)
T 2yqr_A 86 LAAAKKLCENLLQTVHAEYSRFV 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHH
Confidence 99999999999999999999995
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.93 E-value=4.5e-28 Score=219.32 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=87.5
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCC----CCCC----CCCCCCcEEEEEeCCHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSE----GLQG----EEVHQPLHLFLSSNNPK 280 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E----~~~g----~EsdEPLHV~Isa~~~e 280 (501)
+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++.+ ...+ ++.+|||||+|++++++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 579999999999999999999999999999999999999999999999742 1122 36899999999999886
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhccccccccc
Q 010778 281 -----SLEEAKRLAENLLDTISAECGASRVSSCK 309 (501)
Q Consensus 281 -----~v~~Ak~LiE~LL~tV~~E~~~~r~~~~k 309 (501)
+|++|+++|++||.++.+.++.++.....
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~ 115 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLM 115 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHH
Confidence 89999999999999988777776543333
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.91 E-value=1.1e-25 Score=200.81 Aligned_cols=98 Identities=21% Similarity=0.362 Sum_probs=85.2
Q ss_pred ccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCC------CCCCCCCCCcEEEEEeCCHH
Q 010778 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG------LQGEEVHQPLHLFLSSNNPK 280 (501)
Q Consensus 207 k~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~------~~g~EsdEPLHV~Isa~~~e 280 (501)
..+++|||||++.||+|||+|+||||+|+|+|+||+||||||.||||||++.+. ....+++|||||+|++++.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999999999999999999999999999999999999999999998532 22356889999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHhcccc
Q 010778 281 SLEEAKRLAENLLDT---ISAECGASR 304 (501)
Q Consensus 281 ~v~~Ak~LiE~LL~t---V~~E~~~~r 304 (501)
++++|+++|++||.. +-+.++.++
T Consensus 85 ~~~~A~~~I~~ll~~~~~~p~~~d~~k 111 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGIETPEDQNDLR 111 (131)
T ss_dssp HHHHHHHHHHHHHTTTTSCCTTSSGGG
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 999999999999976 334444444
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.35 E-value=4.6e-12 Score=113.04 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=108.4
Q ss_pred ccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 010778 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGF 195 (501)
Q Consensus 117 vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalIkEILKE~P~~~ 195 (501)
++..+.+ |+++++|++.|||.|..--.-+ ++..--.+.|.|.. ..+.+|..+|.+++.+...+.
T Consensus 14 ~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~------~~~~~r~v~I~G~~---------e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 14 VGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPP---------EAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECCCSS------TTCSEEEEEEEECH---------HHHHHHHHHHHHHHHHTTSSC
T ss_pred cceeECCCcHHHHHHHHHHCCeEEEcCCCC------CCCCceEEEEEcCH---------HHHHHHHHHHHHHHhcccccc
Confidence 6778866 9999999999999988743211 22333456788953 478889999999998763322
Q ss_pred CCccccCCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEE
Q 010778 196 PTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS 275 (501)
Q Consensus 196 pp~~~p~~~g~k~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Is 275 (501)
+.. ......++.||- +++|+|||++|.++|+|+++|||+|.|-..+.. ..++.-.|.|+
T Consensus 79 ~~~-------~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--------~~~~~~~v~I~ 137 (163)
T 3krm_A 79 PKE-------EVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--------DENDQVIVKII 137 (163)
T ss_dssp SSC-------CCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--------CTTSEEEEEEE
T ss_pred ccc-------CCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--------CCCCceEEEEE
Confidence 111 122345777873 579999999999999999999999999764321 12344578999
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHHHh
Q 010778 276 SNNPKSLEEAKRLAENLLDTISAEC 300 (501)
Q Consensus 276 a~~~e~v~~Ak~LiE~LL~tV~~E~ 300 (501)
| +++++++|++++++||..+++..
T Consensus 138 G-~~~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 138 G-HFYASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp E-CHHHHHHHHHHHHHHHHHHTC--
T ss_pred e-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 89999999999999999887654
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-11 Score=107.81 Aligned_cols=156 Identities=20% Similarity=0.293 Sum_probs=110.2
Q ss_pred EEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCC-CCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 105 ~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk-~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
..+|.|..-- ++..+-+ |+++++|+++|||.|...- .+. ....++ .+.|.|.. ..|++|..
T Consensus 3 ~~~~~Vp~~~--~g~iIGk~G~~Ik~i~~~tg~~I~i~~----~~~~~~~~~r--~v~I~G~~---------~~v~~A~~ 65 (164)
T 2jvz_A 3 VQEIMIPAGK--AGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDK--PLRIIGDP---------YKVQQACE 65 (164)
T ss_dssp EEEEEECTTC--HHHHTCTTTHHHHHHHHTSCSEEEECC----CTTSSSSSCE--EEEEEECH---------HHHHHHHH
T ss_pred EEEEEechhh--eeEEECCChHHHHHHHHHhCCeEEEec----CCCCCCCCce--EEEEEcCH---------HHHHHHHH
Confidence 4566776544 7888866 9999999999999987621 111 112233 55788853 47899999
Q ss_pred HHHHHHHcCCCC-CCCccccCCCCcc-cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCC
Q 010778 183 MVEEMLKQGHAG-FPTLQTVMGNGVQ-AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG 260 (501)
Q Consensus 183 lIkEILKE~P~~-~pp~~~p~~~g~k-~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~ 260 (501)
+|.+++.+.... ..+ .+.++.. ....++.||- +++|+|||++|.++|+|+++|||+|.|-....
T Consensus 66 ~I~~ii~e~~~~~~~~---~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~----- 131 (164)
T 2jvz_A 66 MVMDILRERDQGGFGD---RNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG----- 131 (164)
T ss_dssp HHHHHTTCSSSCCCSS---CSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----
T ss_pred HHHHHHHhccCCCCCC---ccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----
Confidence 999999876421 111 0122321 1345666662 37999999999999999999999999975321
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 010778 261 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 297 (501)
Q Consensus 261 ~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~ 297 (501)
...+-.|.|+|. ++++++|++++++||+.+.
T Consensus 132 -----~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 132 -----TGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp -----TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 122357888886 9999999999999998754
No 6
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=8.1e-11 Score=104.71 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=108.5
Q ss_pred eEEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 010778 103 IIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (501)
Q Consensus 103 ~f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Av 181 (501)
.+..++.|..- .++..+-+ |.++++|+++|||.|.+... +.+--.+.|.|.. ..|++|.
T Consensus 4 ~~~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~---------~~v~~A~ 63 (160)
T 2jzx_A 4 TLTIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPT---------NAIFKAF 63 (160)
T ss_dssp EEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEH---------HHHHHHH
T ss_pred cEEEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCH---------HHHHHHH
Confidence 35556666543 36777766 89999999999999888531 1223456788864 4788999
Q ss_pred HHHHHHHHcCCC-CCCCccccCCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCC
Q 010778 182 AMVEEMLKQGHA-GFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG 260 (501)
Q Consensus 182 alIkEILKE~P~-~~pp~~~p~~~g~k~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~ 260 (501)
.+|.++|.+... ..+. .. .........++.||- +++|+|||++|.++|.|+++|||+|.|.+..
T Consensus 64 ~~I~~~i~e~~~~~~~~-~~--~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~------ 128 (160)
T 2jzx_A 64 AMIIDKLEEDISSSMTN-ST--AASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM------ 128 (160)
T ss_dssp HHHHHHHHHHHTSCCCS-SS--CCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC------
T ss_pred HHHHHHHHhhccccCCC-Cc--cCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC------
Confidence 999988877522 1110 00 001123467788873 5799999999999999999999999997521
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 010778 261 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (501)
Q Consensus 261 ~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~ 294 (501)
. ....+=.|.|+| +++++++|+++++++|.
T Consensus 129 ~---~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 129 L---PNSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp S---TTCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred C---CCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 1 112345788999 89999999999999874
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.11 E-value=3.7e-10 Score=102.07 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=99.0
Q ss_pred ccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHcCCC-C
Q 010778 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHA-G 194 (501)
Q Consensus 117 vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalIkEILKE~P~-~ 194 (501)
++..+-| |+++++|+++|||.|.+... .....++ .+.|.|.. +.|++|+.+|.+++.+... .
T Consensus 14 vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~~~r--~v~I~G~~---------~~v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 14 VGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTTPER--IAQITGPP---------DRAQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEEECC-----TTSCSEE--EEEEEECH---------HHHHHHHHHHHHHHHHHC---
T ss_pred eeeeecCCchHHHHHHHHhCCEEEEecC-----CCCCCcc--EEEEEeCH---------HHHHHHHHHHHHHHHhcccCC
Confidence 6677766 99999999999999988531 1112233 45788864 4789999999999976521 1
Q ss_pred CCCcc-----cc---CCC--Cc--ccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCC
Q 010778 195 FPTLQ-----TV---MGN--GV--QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 262 (501)
Q Consensus 195 ~pp~~-----~p---~~~--g~--k~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~ 262 (501)
...+. +. ..+ +. .....++.||- +++|+|||++|.++|+|+++|||+|.|-.....
T Consensus 78 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~------ 145 (174)
T 1j4w_A 78 PGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPP------ 145 (174)
T ss_dssp --------------------------CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTT------
T ss_pred CCCCCCCCCCCCCCCCccccCCCCCcEEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCC------
Confidence 10000 00 000 00 12356777773 469999999999999999999999999864211
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 010778 263 GEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 293 (501)
Q Consensus 263 g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL 293 (501)
..+ ...=.|.|+| +++++++|++|++++|
T Consensus 146 ~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 146 NAD-PNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp TSC-TTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CCC-CCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 111 1224588888 8999999999999985
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.10 E-value=2.1e-10 Score=103.88 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=107.1
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeee--cceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITR--GKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 180 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTR--G~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~A 180 (501)
+..+|.|..- .++..+-| |+++++|+++|||.|.+. +.++| ...++ .+.|.|.. +.|++|
T Consensus 6 ~~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~----~~~er--~v~I~G~~---------~~v~~A 68 (178)
T 2anr_A 6 YFLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP----GTTER--VCLIQGTI---------EALNAV 68 (178)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCT----TSSEE--EEEEEECH---------HHHHHH
T ss_pred EEEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCC----CCCCc--eEEEEeCH---------HHHHHH
Confidence 4556666543 37788866 899999999999998873 22221 12233 45788863 478999
Q ss_pred HHHHHHHHHcCCCCCCCcc---c--c--CCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeec
Q 010778 181 AAMVEEMLKQGHAGFPTLQ---T--V--MGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGR 253 (501)
Q Consensus 181 valIkEILKE~P~~~pp~~---~--p--~~~g~k~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGR 253 (501)
+.+|.+++.+.+......+ . + ..+.......++.||- +++|+|||++|.++|.|+++|||+|.|-..
T Consensus 69 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 69 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp HHHHHHHHTCCCCC-----------------CGGGGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 9999999987643211000 0 0 0001123466788873 478999999999999999999999999753
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 010778 254 GSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (501)
Q Consensus 254 GSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~ 294 (501)
... .. ...=.|.|+|. ++++++|++|++++|.
T Consensus 143 ~~~-------~~-~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 143 PDG-------IN-LQNRVVTVSGE-PEQNRKAVELIIQKIQ 174 (178)
T ss_dssp C------------CCEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CCC-------CC-CCceEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 211 01 12246778776 5899999999999875
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.88 E-value=3.6e-09 Score=86.65 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=58.8
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
...+|.||-+ ++|+|||++|.++|.|+++|||+|.|...|+. ....+-+|.|++ +++++++|+++
T Consensus 14 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--------~~~~er~v~I~G-~~~~v~~A~~~ 78 (85)
T 2opv_A 14 TVQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEM 78 (85)
T ss_dssp EEEEEEECTT------THHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--------STTSCEEEEEEE-CHHHHHHHHHH
T ss_pred EEEEEEeChh------heeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--------CCCCceEEEEEe-CHHHHHHHHHH
Confidence 4577888743 69999999999999999999999999875542 112346799999 99999999999
Q ss_pred HHHHHH
Q 010778 289 AENLLD 294 (501)
Q Consensus 289 iE~LL~ 294 (501)
|++|+.
T Consensus 79 I~~i~~ 84 (85)
T 2opv_A 79 VMDILR 84 (85)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999973
No 10
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.71 E-value=1.2e-08 Score=85.22 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=59.8
Q ss_pred ccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 010778 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 286 (501)
Q Consensus 207 k~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak 286 (501)
.....+|.||-+ ++|+|||++|.++|+|+++|||+|.|...|... ....-.|.|++ +++++++|+
T Consensus 13 ~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~r~v~I~G-~~~~v~~A~ 77 (94)
T 1x4m_A 13 GNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--------TGADKPLRITG-DPYKVQQAK 77 (94)
T ss_dssp CCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--------SCSCEEEEEEE-CTTTHHHHH
T ss_pred CcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--------CCCceEEEEEe-CHHHHHHHH
Confidence 445678888854 799999999999999999999999998644321 12346789999 999999999
Q ss_pred HHHHHHHH
Q 010778 287 RLAENLLD 294 (501)
Q Consensus 287 ~LiE~LL~ 294 (501)
+||++||.
T Consensus 78 ~~I~~~i~ 85 (94)
T 1x4m_A 78 EMVLELIR 85 (94)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99999985
No 11
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.70 E-value=1.4e-08 Score=82.59 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=58.7
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 208 ~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
....+|.||-+ ++|.|||++|.++|+|+++|||+|.|... . ....+-.|.|++ +++++++|++
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~---~~~~~~~v~I~G-~~~~v~~A~~ 68 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------L---EGSEDRIITITG-TQDQIQNAQY 68 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------T---SCSSEEEEEEEE-CHHHHHHHHH
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCC-------C---CCCCceEEEEEe-CHHHHHHHHH
Confidence 35677888854 68999999999999999999999999642 1 112235789999 6999999999
Q ss_pred HHHHHHHHHH
Q 010778 288 LAENLLDTIS 297 (501)
Q Consensus 288 LiE~LL~tV~ 297 (501)
|+++++....
T Consensus 69 ~I~~~i~~~~ 78 (82)
T 1zzk_A 69 LLQNSVKQYS 78 (82)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999987654
No 12
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.65 E-value=1.8e-08 Score=83.85 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=58.9
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 208 ~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|..... ....-.|.|++. ++++++|++
T Consensus 14 ~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~----------g~~~r~v~I~G~-~e~v~~A~~ 76 (92)
T 1x4n_A 14 VMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSG----------GLPERSCMLTGT-PESVQSAKR 76 (92)
T ss_dssp CEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCT----------TCSEEEEEEEEC-HHHHHHHHH
T ss_pred CEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCC----------CCCccEEEEEeC-HHHHHHHHH
Confidence 45678888854 7999999999999999999999999986321 123357888886 999999999
Q ss_pred HHHHHHHHH
Q 010778 288 LAENLLDTI 296 (501)
Q Consensus 288 LiE~LL~tV 296 (501)
||+++|...
T Consensus 77 ~I~~~i~~~ 85 (92)
T 1x4n_A 77 LLDQIVEKG 85 (92)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998753
No 13
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.63 E-value=3.2e-08 Score=78.76 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.6
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 289 (501)
..++.||-+ ++|+|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++++++|++|+
T Consensus 4 ~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------~~~~~~~v~I~G~-~~~v~~A~~~I 69 (76)
T 1dtj_A 4 LVEMAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (76)
T ss_dssp EEEEEEETT------THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------TTCCEEEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 456777743 689999999999999999999999998642211 1123457888886 99999999999
Q ss_pred HHHHH
Q 010778 290 ENLLD 294 (501)
Q Consensus 290 E~LL~ 294 (501)
+++|.
T Consensus 70 ~~~i~ 74 (76)
T 1dtj_A 70 SQRVT 74 (76)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 99864
No 14
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.63 E-value=3.4e-08 Score=84.96 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=56.5
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 289 (501)
..+|.||-+ ++|+|||++|.++|+|+++|||+|.|.-.+ ....+-.|.|++. ++++++|++||
T Consensus 12 ~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----------~~~~er~V~I~G~-~e~v~~A~~~I 74 (106)
T 2hh3_A 12 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----------GTGPEKIAHIMGP-PDRCEHAARII 74 (106)
T ss_dssp CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSC----------SSSSEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCC----------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 467778744 589999999999999999999999997421 1122357888886 99999999999
Q ss_pred HHHHHHH
Q 010778 290 ENLLDTI 296 (501)
Q Consensus 290 E~LL~tV 296 (501)
+++|...
T Consensus 75 ~~ii~~~ 81 (106)
T 2hh3_A 75 NDLLQSL 81 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998754
No 15
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.61 E-value=2e-08 Score=83.07 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=58.9
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 208 ~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|... .. + ...-.|.|++. ++++++|++
T Consensus 13 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-------~~--~-~~~~~v~I~G~-~e~v~~A~~ 75 (89)
T 1j5k_A 13 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LE--G-SEDRIITITGT-QDQIQNAQY 75 (89)
T ss_dssp EEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSC-------CS--S-SSEEEEEEEEE-HHHHHHHHH
T ss_pred eEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCC-------CC--C-CCccEEEEEcC-HHHHHHHHH
Confidence 45678888854 79999999999999999999999999641 10 1 12356888887 999999999
Q ss_pred HHHHHHHHHHHH
Q 010778 288 LAENLLDTISAE 299 (501)
Q Consensus 288 LiE~LL~tV~~E 299 (501)
||+++|......
T Consensus 76 ~I~~~i~e~~g~ 87 (89)
T 1j5k_A 76 LLQNSVKQYSGK 87 (89)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHhhhcC
Confidence 999998765443
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.59 E-value=2.6e-08 Score=95.58 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=98.2
Q ss_pred EEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHH
Q 010778 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (501)
Q Consensus 106 aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalI 184 (501)
..|.|+.-. .+..+.+ |.++..|+++||+.|..-- .+... .|.+.+.+.| . .++++|+++|
T Consensus 36 ~~i~IP~~k--ig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V--~I~~~~~t~d-~---~~i~kA~~~I 97 (219)
T 2e3u_A 36 EYVKIPKDR--IAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEV--WITSTKETED-P---LAVWKARDIV 97 (219)
T ss_dssp EEEECCHHH--HHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEE--EEEECTTCCS-H---HHHHHHHHHH
T ss_pred EEEEeCHHH--hhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEE--EEecCCCCCC-H---HHHHHHHHHH
Confidence 467777655 7888877 8999999999999987631 23334 4555432111 1 4889999999
Q ss_pred HHHHHcCCCCCCCcc--ccCCCCcccceeEEEecC---CCCCCC--ceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCC
Q 010778 185 EEMLKQGHAGFPTLQ--TVMGNGVQAMSTSVFLGF---DADASL--NIAARIRGPNDQYINHIMNETGATVLLRGRGSGN 257 (501)
Q Consensus 185 kEILKE~P~~~pp~~--~p~~~g~k~~eeKI~Ipv---e~~P~F--NfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~ 257 (501)
+.++... .++.. .-.+. ...+.+.|+- ..-|++ ..+|+|||++|.|+|.||+.|||+|+|-|+
T Consensus 98 ~~i~rg~---~~e~g~~ll~dd---~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~---- 167 (219)
T 2e3u_A 98 LAIGRGF---SPERAFRLLNEG---EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGK---- 167 (219)
T ss_dssp HHHHTTC---CHHHHGGGGSTT---CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETT----
T ss_pred HHHhccC---CccccceeccCC---ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCe----
Confidence 9987421 00000 00000 1123333331 112232 268999999999999999999999999641
Q ss_pred CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 010778 258 SEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 295 (501)
Q Consensus 258 ~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~t 295 (501)
.|+|.| ++++++.|++++++||+.
T Consensus 168 -------------~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 168 -------------TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp -------------EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred -------------EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 377777 788999999999999964
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=5.1e-08 Score=83.45 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 289 (501)
..+|.||-+ ++|+|||++|.++|+|+++|||+|.|.....- . .....-.|.|++ +.+++++|++||
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~------~-~~~~~r~V~I~G-~~e~v~~A~~~I 73 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPP------N-GDPNFKLFIIRG-SPQQIDHAKQLI 73 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT------T-CCTTEEEEEEES-CHHHHHHHHHHH
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC------C-CCCCceEEEEEC-CHHHHHHHHHHH
Confidence 567888754 68999999999999999999999999753211 0 112235678888 999999999999
Q ss_pred HHHHHH
Q 010778 290 ENLLDT 295 (501)
Q Consensus 290 E~LL~t 295 (501)
+++|..
T Consensus 74 ~~~i~e 79 (107)
T 2hh2_A 74 EEKIEG 79 (107)
T ss_dssp HHHSCS
T ss_pred HHHHhc
Confidence 999853
No 18
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.56 E-value=5.3e-08 Score=82.08 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=62.6
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 208 ~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
.....+.||-+ ++|+|||++|.++|.|+++|||+|.|-..|+ ..+-.|.|++. ++++++|++
T Consensus 16 ~vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-----------~~~~~V~I~G~-~e~v~~A~~ 77 (95)
T 2ctm_A 16 MVSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGA-----------PDPNCVTVTGL-PENVEEAID 77 (95)
T ss_dssp CCCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTC-----------SCTTEEEEESC-HHHHHHHHH
T ss_pred cEEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCC-----------CCCcEEEEEcC-HHHHHHHHH
Confidence 34677888744 5899999999999999999999999965432 12457999998 699999999
Q ss_pred HHHHHHHHHHHHhcc
Q 010778 288 LAENLLDTISAECGA 302 (501)
Q Consensus 288 LiE~LL~tV~~E~~~ 302 (501)
++++|+....+++..
T Consensus 78 ~I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 78 HILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999887776654
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.56 E-value=4.2e-08 Score=82.06 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=57.6
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
....|.||-+ ++|.|||++|.++|+|+++|||+|.|-..+ ++.-.|.|+|. ++++++|+++
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------------~~~~~V~I~G~-~e~v~~A~~~ 77 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPD------------DPSNQIKITGT-KEGIEKARHE 77 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTT------------SSCCEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCC------------CCCCeEEEEEC-HHHHHHHHHH
Confidence 4577788744 589999999999999999999999995321 12248999998 9999999999
Q ss_pred HHHHHHHHH
Q 010778 289 AENLLDTIS 297 (501)
Q Consensus 289 iE~LL~tV~ 297 (501)
|++|+....
T Consensus 78 I~~i~~~~~ 86 (94)
T 2cte_A 78 VLLISAEQD 86 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhccc
Confidence 999987654
No 20
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.54 E-value=1.1e-07 Score=80.25 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=60.9
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
+..++.||-+ ++|+|||++|.++|+|+++|||+|.|--.|.. ....-.|.|+|. .+.+++|+++
T Consensus 17 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~---------~~~~~~V~I~G~-~e~v~~A~~~ 80 (97)
T 2ctl_A 17 FKLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG---------NQPQDQITITGY-EKNTEAARDA 80 (97)
T ss_dssp CEEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTC---------SSCSSEEEEESC-HHHHHHHHHH
T ss_pred eeEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCC---------CCCccEEEEEeC-HHHHHHHHHH
Confidence 4667778733 58999999999999999999999999654321 123357999997 9999999999
Q ss_pred HHHHHHHHHHHh
Q 010778 289 AENLLDTISAEC 300 (501)
Q Consensus 289 iE~LL~tV~~E~ 300 (501)
|++|+..+.++.
T Consensus 81 I~~iv~e~e~~~ 92 (97)
T 2ctl_A 81 ILRIVGELEQMS 92 (97)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 999998776543
No 21
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.53 E-value=7e-08 Score=79.17 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=58.4
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 289 (501)
..++.||-+ .+|.|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++++++|++||
T Consensus 4 t~~i~IP~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------~g~~~r~v~I~G~-~~~v~~A~~~I 69 (87)
T 1ec6_A 4 LVEIAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (87)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------TTSCEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------CCCCceEEEEEcC-HHHHHHHHHHH
Confidence 456777743 789999999999999999999999997532110 0123357888886 99999999999
Q ss_pred HHHHHHHHHH
Q 010778 290 ENLLDTISAE 299 (501)
Q Consensus 290 E~LL~tV~~E 299 (501)
+++|......
T Consensus 70 ~~~i~~~~~~ 79 (87)
T 1ec6_A 70 SQRVTYEQGV 79 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhccccc
Confidence 9998765443
No 22
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.52 E-value=9.1e-08 Score=81.26 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
...+|.||-+ ++|+|||++|.++|.|+++|||+|.|-....+. ..+.-.|.|.+.+. ++++|++|
T Consensus 15 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~~~V~I~G~~~-~v~~A~~~ 79 (104)
T 1we8_A 15 VFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT--------LLLSRLIKISGTQK-EVAAAKHL 79 (104)
T ss_dssp EEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--------SSSEEEEEEEEEHH-HHHHHHHH
T ss_pred EEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--------CCCcceEEEEcCHH-HHHHHHHH
Confidence 4678888844 699999999999999999999999997643211 12346788998666 79999999
Q ss_pred HHHHHHHH
Q 010778 289 AENLLDTI 296 (501)
Q Consensus 289 iE~LL~tV 296 (501)
|+++|...
T Consensus 80 I~~~i~e~ 87 (104)
T 1we8_A 80 ILEKVSED 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998653
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.50 E-value=5.8e-08 Score=78.86 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=56.0
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|.... +....-.|.|+|. ++++++|++|
T Consensus 6 ~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------~~~~~r~v~I~G~-~~~v~~A~~~ 68 (82)
T 1wvn_A 6 TTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPV----------EGSSGRQVTITGS-AASISLAQYL 68 (82)
T ss_dssp EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCC----------CCCCceEEEEEcC-HHHHHHHHHH
Confidence 4567888854 789999999999999999999999997521 1123457888885 5999999999
Q ss_pred HHHHHHH
Q 010778 289 AENLLDT 295 (501)
Q Consensus 289 iE~LL~t 295 (501)
|+++|..
T Consensus 69 I~~~i~~ 75 (82)
T 1wvn_A 69 INARLSS 75 (82)
T ss_dssp HHHHTC-
T ss_pred HHHHHHh
Confidence 9999864
No 24
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=6.9e-08 Score=79.85 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=52.0
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 208 ~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
....+|.||- +++|.|||++|+++|+||++|||+|+|-.++ +|+ .+.|++. ++++++|++
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------------~~~-~v~ItG~-~e~v~~A~~ 68 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------------KEP-VFAVTGM-PENVDRARE 68 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------------SCC-EEEEEEC-TTTHHHHHH
T ss_pred ceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC------------CCC-eEEEEcC-HHHHHHHHH
Confidence 3456777763 5899999999999999999999999996421 132 3666665 599999999
Q ss_pred HHHHHH
Q 010778 288 LAENLL 293 (501)
Q Consensus 288 LiE~LL 293 (501)
+|++++
T Consensus 69 ~I~~~i 74 (83)
T 2dgr_A 69 EIEAHI 74 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 25
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.49 E-value=5.6e-08 Score=77.79 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=56.2
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|... . +....-.|.|+|. ++++++|++|
T Consensus 5 ~~~~i~Ip~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~---~~~~~~~v~I~G~-~~~v~~A~~~ 67 (76)
T 2p2r_A 5 TSHELTIPND------LIGCIIGRQGAKINEIRQMSGAQIKIANP-------V---EGSTDRQVTITGS-AASISLAQYL 67 (76)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCC-------C---TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HcceEECCCChHHHHHHHHHCCEEEEcCC-------C---CCCCeEEEEEEeC-HHHHHHHHHH
Confidence 4567778743 78999999999999999999999999752 1 1123457889986 9999999999
Q ss_pred HHHHHH
Q 010778 289 AENLLD 294 (501)
Q Consensus 289 iE~LL~ 294 (501)
++++|.
T Consensus 68 I~~~i~ 73 (76)
T 2p2r_A 68 INVRLS 73 (76)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999874
No 26
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.49 E-value=8.8e-08 Score=81.94 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=61.4
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
..+.+.||-+ ++|+|||++|.++|.|+++|||+|.|--.|+ ++-.|.|+|.+ +++++|+++
T Consensus 17 ~~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~------------~~~~V~I~G~~-e~v~~A~~~ 77 (104)
T 2ctk_A 17 VTIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL------------QSDIIAITGLA-ANLDRAKAG 77 (104)
T ss_dssp EEEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTT------------TCCEEEEEECH-HHHHHHHHH
T ss_pred EEEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCC------------CcceEEEEcCH-HHHHHHHHH
Confidence 4567777744 6899999999999999999999999964332 12389999985 999999999
Q ss_pred HHHHHHHHHHHhcc
Q 010778 289 AENLLDTISAECGA 302 (501)
Q Consensus 289 iE~LL~tV~~E~~~ 302 (501)
|++|+.....+...
T Consensus 78 I~~i~~e~e~~~~d 91 (104)
T 2ctk_A 78 LLERVKELQAEQED 91 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhHHH
Confidence 99999988877543
No 27
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.41 E-value=1.6e-07 Score=74.77 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=53.3
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
..+.+.||-+ ++|.|||++|.++++|+++|||+|.|--.|. .+-.|.|+|. .+.+++|+++
T Consensus 5 ~~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~------------~~~~V~I~G~-~~~v~~A~~~ 65 (71)
T 1vig_A 5 DYVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE------------KSNLIRIEGD-PQGVQQAKRE 65 (71)
T ss_dssp EEEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS------------SSEEEEEEES-SHHHHHHHHH
T ss_pred EEEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC------------cccEEEEEcC-HHHHHHHHHH
Confidence 3456677633 6899999999999999999999999864321 2247999998 6899999999
Q ss_pred HHHHH
Q 010778 289 AENLL 293 (501)
Q Consensus 289 iE~LL 293 (501)
+++|+
T Consensus 66 I~~i~ 70 (71)
T 1vig_A 66 LLELA 70 (71)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 99885
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.35 E-value=2e-07 Score=74.49 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=54.7
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..| ..+-.|.|+|. ++++++|++|
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~------------~~er~v~I~G~-~~~v~~A~~~ 65 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGN------------CPERIITLAGP-TNAIFKAFAM 65 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSC------------CSEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCC------------CCcEEEEEEeC-HHHHHHHHHH
Confidence 356677773 3799999999999999999999999997531 11235888888 9999999999
Q ss_pred HHHHHH
Q 010778 289 AENLLD 294 (501)
Q Consensus 289 iE~LL~ 294 (501)
++++|.
T Consensus 66 I~~~l~ 71 (73)
T 2axy_A 66 IIDKLE 71 (73)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999885
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.30 E-value=3.1e-07 Score=86.75 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=94.2
Q ss_pred EEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHH
Q 010778 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (501)
Q Consensus 107 EIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalIk 185 (501)
.|.|.+-. +-+.+.+ |++...|++.+|+.|.... .++..- |.....+.|. .++.+|.+.|+
T Consensus 7 ~i~VP~~r--vg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~--i~t~~~t~dp----~~i~KA~dlI~ 68 (191)
T 1tua_A 7 YVKVKPER--LGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVI--VEPEAEGIPP----VNLMKAAEVVK 68 (191)
T ss_dssp EEECCGGG--HHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEE--EEESSTTSCH----HHHHHHHHHHH
T ss_pred EEECCHHH--hhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEE--EEeCCCCCCH----HHHHHHHHHHH
Confidence 45555544 5556655 8999999999999988753 244443 3322111121 37888999998
Q ss_pred HHHHcCCCCCCCcc-cc-CCCCcccceeEEEecCCCC-CC-----CceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCC
Q 010778 186 EMLKQGHAGFPTLQ-TV-MGNGVQAMSTSVFLGFDAD-AS-----LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGN 257 (501)
Q Consensus 186 EILKE~P~~~pp~~-~p-~~~g~k~~eeKI~Ipve~~-P~-----FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~ 257 (501)
.+...- ++.+ .. .+. -..-+.+.|+ .+ .. -..+|+|||++|.|+|.||+.|||+|.|-|+
T Consensus 69 ai~rgf----~~e~A~~Ll~D--d~~~e~i~i~--~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~---- 136 (191)
T 1tua_A 69 AISLGF----PPEKAFRLLEE--DQILVVVDLK--QVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY---- 136 (191)
T ss_dssp HHHHTC----CHHHHGGGGST--TEEEEEEETH--HHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS----
T ss_pred HHHcCC----CHHHhhhcccC--cceeEEEEcc--cccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC----
Confidence 877532 1100 00 000 0112233233 11 10 1268999999999999999999999999752
Q ss_pred CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 010778 258 SEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 295 (501)
Q Consensus 258 ~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~t 295 (501)
.++|.| +++.++.|+..+++||+.
T Consensus 137 -------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 -------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp -------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred -------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 577776 789999999999999964
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.29 E-value=2.5e-06 Score=76.31 Aligned_cols=137 Identities=15% Similarity=0.279 Sum_probs=92.5
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
|+.++.|..=+ +...+.+ |+++..|++++|..|. .|- +++-.| .+.+.+ + ..|.++
T Consensus 4 ~~~~~~Vp~~~--vG~~IG~~G~~I~~i~~e~gI~ii---~~~-------~~~~~~-i~~~~~--p------~~v~~~-- 60 (144)
T 2qnd_A 4 FHEQFIVREDL--MGLAIGTHGANIQQARKVPGVTAI---DLD-------EDTCTF-HIYGED--Q------DAVKKA-- 60 (144)
T ss_dssp CEEEEECCGGG--HHHHHCGGGHHHHHHHTSTTEEEE---EEE-------TTTTEE-EEEESS--H------HHHHHH--
T ss_pred eEEEEEECCcc--eeeEECCChhHHHHHHHHHCCeEe---ccC-------CCchhe-eeccCC--H------HHHHHH--
Confidence 56778887666 7888866 9999999999993332 121 233344 456654 2 244443
Q ss_pred HHHHHHHcCCCCCCCccccCCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCC-EEEEeecCCCCCCCC
Q 010778 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGA-TVLLRGRGSGNSEGL 261 (501)
Q Consensus 183 lIkEILKE~P~~~pp~~~p~~~g~k~~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGa-KI~IRGRGSg~~E~~ 261 (501)
+++|.- .+..|.||-+ .+|++||.+|.|+|.|+++||| +|.|.+.....
T Consensus 61 --~~~l~~------------------~e~~v~Vp~~------~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~---- 110 (144)
T 2qnd_A 61 --RSFLEF------------------AEDVIQVPRN------LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN---- 110 (144)
T ss_dssp --HHHHCE------------------EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----
T ss_pred --HHhhhc------------------ceEEEEECHH------HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----
Confidence 334321 1256777633 6899999999999999999997 99999753221
Q ss_pred CCCCCCCCc-EEEEEeCCHHHHHHHHHHHHHHHHHH
Q 010778 262 QGEEVHQPL-HLFLSSNNPKSLEEAKRLAENLLDTI 296 (501)
Q Consensus 262 ~g~EsdEPL-HV~Isa~~~e~v~~Ak~LiE~LL~tV 296 (501)
...+|.+ -|.|+| +.+++++|++|++++|..+
T Consensus 111 --~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 111 --VPQEEGMVPFVFVG-TKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp --CCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHTC
T ss_pred --ccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 1112333 356666 7899999999999999753
No 31
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.04 E-value=2.5e-06 Score=72.08 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=56.2
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhh-CCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ET-GaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
.++.+.||-+ +.+.||||+|.+++.|++|| ||+|.|--.|+ ..-.|.|.|++. .+++|++
T Consensus 17 vt~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~------------~~~~V~I~G~~~-~v~~A~~ 77 (95)
T 2ctj_A 17 AEVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGS------------GSDTVVIRGPSS-DVEKAKK 77 (95)
T ss_dssp CCEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTT------------TCCEEEEESCHH-HHHHHHH
T ss_pred EEEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCC------------CcceEEEEcCHH-HHHHHHH
Confidence 4567778754 57889999999999999999 99998854332 234799999988 9999999
Q ss_pred HHHHHHHHH
Q 010778 288 LAENLLDTI 296 (501)
Q Consensus 288 LiE~LL~tV 296 (501)
++++|+...
T Consensus 78 ~I~~iv~e~ 86 (95)
T 2ctj_A 78 QLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999998653
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.04 E-value=6e-06 Score=73.08 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=54.0
Q ss_pred eEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 010778 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (501)
Q Consensus 211 eKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE 290 (501)
.++.||-+ .+|.|||++|.++|+|+++|||+|.|--.+.. ....+-.|.|++ +++.+++|+.++.
T Consensus 4 ~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--------~~~~~r~v~I~G-~~~~v~~A~~~I~ 68 (164)
T 2jvz_A 4 QEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEMVM 68 (164)
T ss_dssp EEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS--------SSSSCEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC--------CCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 56777743 69999999999999999999999999532210 112234688888 8899999999999
Q ss_pred HHHHH
Q 010778 291 NLLDT 295 (501)
Q Consensus 291 ~LL~t 295 (501)
+++..
T Consensus 69 ~ii~e 73 (164)
T 2jvz_A 69 DILRE 73 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98753
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.00 E-value=3.5e-06 Score=76.02 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=55.5
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 289 (501)
..++.||-+ .+|+|||++|.++|+|+++|||+|.|... + ....+-.|.|++. ++.+++|++++
T Consensus 4 ~~~~~vp~~------~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~-----~~~~~r~v~I~G~-~~~v~~A~~~I 66 (174)
T 1j4w_A 4 MIDVPIPRF------AVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----D-----GTTPERIAQITGP-PDRAQHAAEII 66 (174)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEEECC-----T-----TSCSEEEEEEEEC-HHHHHHHHHHH
T ss_pred EEEEEEChh------heeeeecCCchHHHHHHHHhCCEEEEecC-----C-----CCCCccEEEEEeC-HHHHHHHHHHH
Confidence 346667643 79999999999999999999999999642 0 0122346788877 89999999999
Q ss_pred HHHHHHHH
Q 010778 290 ENLLDTIS 297 (501)
Q Consensus 290 E~LL~tV~ 297 (501)
+++|....
T Consensus 67 ~~~~~~~~ 74 (174)
T 1j4w_A 67 TDLLRSVQ 74 (174)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcc
Confidence 99987653
No 34
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.87 E-value=2.8e-06 Score=72.07 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=52.9
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCE-EEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGAT-VLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaK-I~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
..+.+.||-+ .+|.+|||+|.++|.|+++|||+ |-|- ++.=.|.|.+.+.+.+++|++
T Consensus 15 ~i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~---------------eddG~V~I~g~~~ea~~~A~~ 73 (91)
T 2cpq_A 15 FHEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELD---------------EDTGTFRIYGESADAVKKARG 73 (91)
T ss_dssp EEEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEE---------------TTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEE---------------cCCCEEEEEECCHHHHHHHHH
Confidence 3455666643 58999999999999999999998 9993 123579999999999999999
Q ss_pred HHHHHH
Q 010778 288 LAENLL 293 (501)
Q Consensus 288 LiE~LL 293 (501)
+++++-
T Consensus 74 ~I~~ie 79 (91)
T 2cpq_A 74 FLEFVE 79 (91)
T ss_dssp HHSCCC
T ss_pred HHHhhh
Confidence 998764
No 35
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.70 E-value=1.7e-05 Score=70.31 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=54.2
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
...++.||-+ .+|.|||++|.++|+|+++|||+|.|-..| ...-.|.|+|. .+.+++|+.+
T Consensus 5 ~~~~~~vp~~------~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~------------~~~r~v~I~G~-~~~v~~A~~~ 65 (160)
T 2jzx_A 5 LTIRLLMHGK------EVGSIIGKKGESVKKMREESGARINISEGN------------CPERIITLAGP-TNAIFKAFAM 65 (160)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCSEEEEECCT------------TTEEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEEEEchh------heeeeECCCcHHHHHHHHHHCCEEEEcCCC------------CCceEEEEEeC-HHHHHHHHHH
Confidence 3456777633 699999999999999999999999997532 12246778886 8999999999
Q ss_pred HHHHHHH
Q 010778 289 AENLLDT 295 (501)
Q Consensus 289 iE~LL~t 295 (501)
+.+++..
T Consensus 66 I~~~i~e 72 (160)
T 2jzx_A 66 IIDKLEE 72 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.68 E-value=2.6e-05 Score=70.48 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=53.4
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|.-.+-.. . ...| -.|.|++. .+.+++|+++
T Consensus 6 ~~~~i~vp~~------~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~----~--~~~e-r~v~I~G~-~~~v~~A~~~ 71 (178)
T 2anr_A 6 YFLKVLIPSY------AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY----P--GTTE-RVCLIQGT-IEALNAVHGF 71 (178)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC----T--TSSE-EEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEEChh------HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC----C--CCCC-ceEEEEeC-HHHHHHHHHH
Confidence 4567777743 799999999999999999999999996432111 0 1111 24667775 8999999999
Q ss_pred HHHHHH
Q 010778 289 AENLLD 294 (501)
Q Consensus 289 iE~LL~ 294 (501)
+.+++.
T Consensus 72 I~~~~~ 77 (178)
T 2anr_A 72 IAEKIR 77 (178)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998874
No 37
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.67 E-value=2.9e-05 Score=69.07 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=53.3
Q ss_pred eEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 010778 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 290 (501)
Q Consensus 211 eKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE 290 (501)
.++.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. ...+--|.|+| +++++.+|+.+|.
T Consensus 5 ~~~~ip~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------~~~~r~v~I~G-~~e~v~~A~~~I~ 68 (163)
T 3krm_A 5 VQVFIPAQ------AVGAIIGKKGQHIKQLSRFASASIKIAPPETP---------DSKVRMVIITG-PPEAQFKAQGRIY 68 (163)
T ss_dssp EEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST---------TCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC---------CCCceEEEEEc-CHHHHHHHHHHHH
Confidence 45666633 68999999999999999999999999753210 12223577777 8999999999998
Q ss_pred HHHHH
Q 010778 291 NLLDT 295 (501)
Q Consensus 291 ~LL~t 295 (501)
+++..
T Consensus 69 ~~~~e 73 (163)
T 3krm_A 69 GKLKE 73 (163)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 38
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=0.00012 Score=64.50 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=57.8
Q ss_pred EEEEEEcC--C-CCc--ccccee-cchhHHHHHHhhhCCeEeeecc---eeCCCCCCCCCCCeEEEEEeccchhhHHHHH
Q 010778 104 IAREIVIN--D-SES--SVRYKL-TKRHTQEEIQKCTGAVVITRGK---YRLPNAPPDGEKPLYLHISAGAHLKETAERI 174 (501)
Q Consensus 104 f~aEIeIN--D-lPq--~vR~~L-TK~~Tq~eI~e~TGAsItTRG~---Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri 174 (501)
+.+.|.|. + +|. ..+..| -+|.|++.|+++|||.|..||+ |+-+......+.+||++|++.+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~-------- 83 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP-------- 83 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH--------
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH--------
Confidence 55666554 2 453 345556 4599999999999999999986 32222233455689999999874
Q ss_pred HHHHHHHHHHHHHHHc
Q 010778 175 LAVDHAAAMVEEMLKQ 190 (501)
Q Consensus 175 ~aVd~AvalIkEILKE 190 (501)
+++++|+++|++|+..
T Consensus 84 e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 84 EGLAAAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 5899999999999864
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.54 E-value=0.00015 Score=64.75 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=57.4
Q ss_pred EEEEEEc--CCCCc---cccceecchhHHHHHHhhhCCeEeeecceeC-CCC--C------CCCCCCeEEEEEeccchhh
Q 010778 104 IAREIVI--NDSES---SVRYKLTKRHTQEEIQKCTGAVVITRGKYRL-PNA--P------PDGEKPLYLHISAGAHLKE 169 (501)
Q Consensus 104 f~aEIeI--NDlPq---~vR~~LTK~~Tq~eI~e~TGAsItTRG~Y~P-Pgk--~------~~~EpPLYL~Ieg~Tq~kd 169 (501)
+...|.| .++|. --|..=.+|.|+++|+++|||.|.+||+.-- .++ . ...+.+||++|++.+.
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~--- 83 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM--- 83 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH---
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH---
Confidence 4555555 44552 2255558899999999999999999886421 111 1 1235589999999874
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 010778 170 TAERILAVDHAAAMVEEMLKQG 191 (501)
Q Consensus 170 taEri~aVd~AvalIkEILKE~ 191 (501)
+.+++|+++|+++|++.
T Consensus 84 -----e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 -----ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp -----HHHHHHHHHHHHHHTTT
T ss_pred -----HHHHHHHHHHHHHHhcc
Confidence 57999999999999764
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.43 E-value=5.8e-05 Score=82.23 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=51.0
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 289 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 289 (501)
-+.+-||.+ .+|.||||+|.++|.|++||||+|.|- |.=.|.|.+.|.+.+++|+++|
T Consensus 568 ~~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------------d~G~V~I~~~~~~~~~~A~~~I 625 (630)
T 3u1k_A 568 VETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQV----------------DEETFSVFAPTPSAMHEARDFI 625 (630)
T ss_dssp EEEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEEC----------------SSSEEEEEESSHHHHHHHHHHT
T ss_pred EEEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEc----------------CCcEEEEEeCCHHHHHHHHHHH
Confidence 345666644 488999999999999999999999874 2257999999999999999999
Q ss_pred HHHH
Q 010778 290 ENLL 293 (501)
Q Consensus 290 E~LL 293 (501)
++|+
T Consensus 626 ~~i~ 629 (630)
T 3u1k_A 626 TEIC 629 (630)
T ss_dssp TC--
T ss_pred HHHh
Confidence 9886
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.11 E-value=0.0008 Score=57.34 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=56.6
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHh-hCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNE-TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 287 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~E-TGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 287 (501)
.+.+|.||-+ |.+.|||++|+++|+|+++ ++++|.+-. + .--|.|.|+ .+.|++|+.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~---~~~ItI~G~-~~~V~~a~~ 84 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE------------G---EDKITLEGP-TEDVSVAQE 84 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS------------S---SCEEEEEEC-HHHHHHHHH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC------------C---CCEEEEECC-HHHHHHHHH
Confidence 4566777633 4678999999999999997 688886642 1 126999998 999999999
Q ss_pred HHHHHHHHHHHHhc
Q 010778 288 LAENLLDTISAECG 301 (501)
Q Consensus 288 LiE~LL~tV~~E~~ 301 (501)
.+++|++...++..
T Consensus 85 ~I~~~v~el~~~~~ 98 (102)
T 2ctf_A 85 QIEGMVKDLINRSG 98 (102)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998887643
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.91 E-value=0.00057 Score=75.67 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=13.8
Q ss_pred eeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010778 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASR 304 (501)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~~E~~~~r 304 (501)
.++.||||+|.++|.|++|||++|-|. |+-.|.|.+.|.+.+++|+++++.|+.....
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~----------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~v------ 637 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN----------------DDGVVKVSASDGAKIKAAIDWIKSITDEAEV------ 637 (726)
T ss_dssp --------------------------------------------------CCSCHHHHHHHHHC----------------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE----------------CCceEEEEeCCHHHHHHHHHHHHHHhhhhcC------
Confidence 488999999999999999999999754 3356889999999999999999999863321
Q ss_pred ccccccccCCCCchhhhcccccccccccCCcccchhhcccccc
Q 010778 305 VSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNL 347 (501)
Q Consensus 305 ~~~~k~y~~~pppqq~~~gv~~~~~~~~~~~~~~~~~~~~~~~ 347 (501)
...|. --+.+|..+|..-.+.. ..-||.|--++
T Consensus 638 ---G~v~~------G~V~~I~~fGaFVel~~-g~eGLvHiSel 670 (726)
T 4aid_A 638 ---GKIYD------GKVVKVVDFGAFVNFFG-AKDGLVHVSQI 670 (726)
T ss_dssp -------------------------------------------
T ss_pred ---CcEEE------EEEEEEeccEEEEEECC-CcEEEEEHHHc
Confidence 12221 24556666664444332 24566664433
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.55 E-value=0.0039 Score=56.51 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=47.6
Q ss_pred cchhHHHHHHhhhCCeEeeecceeCC---------CCC--CCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHc
Q 010778 122 TKRHTQEEIQKCTGAVVITRGKYRLP---------NAP--PDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQ 190 (501)
Q Consensus 122 TK~~Tq~eI~e~TGAsItTRG~Y~PP---------gk~--~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalIkEILKE 190 (501)
-+|.|++.|+++|||.|..||+=--- +.+ ...+-|||++|++.+. .+.++ ..+++|+++|+.+|..
T Consensus 25 PrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~-~~~~~--~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 25 PRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA-QNRAE--LKLKRAVEEVKKLLVP 101 (140)
T ss_dssp TTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC-CHHHH--HHHHHHHHHHHHHSSC
T ss_pred CCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc-hhhHH--HHHHHHHHHHHHHCCC
Confidence 47999999999999999999852100 000 1246789999999764 21122 4789999999999864
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.48 E-value=0.004 Score=64.35 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=49.3
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCc--hhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 286 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~G--stlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak 286 (501)
+...|.|+-+ +...|||.+| ..+++|+++|||+|.+-..++.. +...+.-.|.|+| ..++|.+|+
T Consensus 186 ~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~------d~~~~~~~ItItG-s~e~V~~Ar 252 (376)
T 3n89_A 186 FTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRN------ETRGNIYEIKVVG-NIDNVLKAR 252 (376)
T ss_dssp EEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC---------------CCEEEEEEES-CHHHHHHHH
T ss_pred eEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcc------cccCCceEEEEEe-CHHHHHHHH
Confidence 4455555533 3567999999 45699999999999986654321 0112235688888 899999999
Q ss_pred HHHHHHH
Q 010778 287 RLAENLL 293 (501)
Q Consensus 287 ~LiE~LL 293 (501)
+.+++||
T Consensus 253 k~I~~lL 259 (376)
T 3n89_A 253 RYIMDLL 259 (376)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 9999987
No 45
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.45 E-value=0.0018 Score=62.23 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=52.3
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCC----HHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNN----PKSLEEA 285 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~----~e~v~~A 285 (501)
..+|.||-+ -+|.|||++|.+++.|+++|||+|.|-- +.=.|.|.+.+ ++.+++|
T Consensus 35 i~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~---------------~~g~V~I~~~~~t~d~~~i~kA 93 (219)
T 2e3u_A 35 EEYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDS---------------ETGEVWITSTKETEDPLAVWKA 93 (219)
T ss_dssp EEEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECT---------------TTCEEEEEECTTCCSHHHHHHH
T ss_pred EEEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEc---------------CCCEEEEecCCCCCCHHHHHHH
Confidence 457778754 5889999999999999999999999942 11247788776 9999999
Q ss_pred HHHHHHHH
Q 010778 286 KRLAENLL 293 (501)
Q Consensus 286 k~LiE~LL 293 (501)
+++|+.|.
T Consensus 94 ~~~I~~i~ 101 (219)
T 2e3u_A 94 RDIVLAIG 101 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999987
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.19 E-value=0.0021 Score=66.34 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred ccceeEEEecCCCCCCCceeEEEeCCCc--hhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHH
Q 010778 207 QAMSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEE 284 (501)
Q Consensus 207 k~~eeKI~Ipve~~P~FNfvgrIIGP~G--stlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~ 284 (501)
...+.++.||-+ |...|||.+| +++++|++||||+|.+=-++.... .. ...---|.|+| ..++|++
T Consensus 28 ~~VTl~v~Ip~~------~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~---~~--~~ks~~VtItG-~~enVE~ 95 (376)
T 3n89_A 28 TRVTLNMEFESQ------YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGT---TP--DPFAQQVTITG-YFGDVDR 95 (376)
T ss_dssp TEEEEEEECCGG------GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSS---SC--CTTTTEEEEEE-EHHHHHH
T ss_pred CEEEEEEEEchh------hhhhhccCCChHHHHHHHHHHhCCeEECCCCccccc---CC--cCCCCeEEEEc-CHHHHHH
Confidence 455677777633 5778999999 999999999999999954331110 00 11113466766 5789999
Q ss_pred HHHHHHHH
Q 010778 285 AKRLAENL 292 (501)
Q Consensus 285 Ak~LiE~L 292 (501)
||+.+.+|
T Consensus 96 AR~~I~~l 103 (376)
T 3n89_A 96 ARMLMRRN 103 (376)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99999886
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.14 E-value=0.0024 Score=57.02 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=47.5
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 010778 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 288 (501)
Q Consensus 209 ~eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 288 (501)
+++++.||-+ ++|.+||++|++++.|++|+| |.|-- .+++|--+.+.+.+++.+.+|+.|
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~------------~~~~~~~~i~~~~~p~~v~~~~~~ 63 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAID------------LDEDTCTFHIYGEDQDAVKKARSF 63 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEE------------EETTTTEEEEEESSHHHHHHHHHH
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEec------------cCCCchheeeccCCHHHHHHHHHh
Confidence 4567777744 699999999999999999999 44431 123556688889999999999875
Q ss_pred H
Q 010778 289 A 289 (501)
Q Consensus 289 i 289 (501)
+
T Consensus 64 l 64 (144)
T 2qnd_A 64 L 64 (144)
T ss_dssp H
T ss_pred h
Confidence 4
No 48
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=95.44 E-value=0.07 Score=43.00 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|..-- ++..+-+ |.++++|+++|||.|.+... .++...-.+.|.|.. +.+++|+.
T Consensus 7 ~~~~i~Vp~~~--vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 68 (82)
T 1zzk_A 7 ITTQVTIPKDL--AGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQ---------DQIQNAQY 68 (82)
T ss_dssp EEEEEEEETTT--GGGGTCGGGHHHHHHHHHHCCEEEECCT-------TSCSSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChHh--cCeeECCCchHHHHHHHHHCCEEEEcCC-------CCCCCceEEEEEeCH---------HHHHHHHH
Confidence 66778887654 8899977 89999999999999988531 112222356789953 48999999
Q ss_pred HHHHHHHcC
Q 010778 183 MVEEMLKQG 191 (501)
Q Consensus 183 lIkEILKE~ 191 (501)
+|++++++.
T Consensus 69 ~I~~~i~~~ 77 (82)
T 1zzk_A 69 LLQNSVKQY 77 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999764
No 49
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=95.15 E-value=0.053 Score=42.65 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=50.2
Q ss_pred EEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHH
Q 010778 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (501)
Q Consensus 105 ~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Aval 183 (501)
..+|.|..-- ++..+.+ |.++++|++.|||.|.+... +...++...-.+.|.|.. ..+++|+.+
T Consensus 4 ~~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~~~~v~I~G~~---------~~v~~A~~~ 68 (76)
T 1dtj_A 4 LVEMAVPENL--VGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYL 68 (76)
T ss_dssp EEEEEEETTT--HHHHHCSTTHHHHHHHHHHCCEEEECCT----TCCSTTCCEEEEEEEESH---------HHHHHHHHH
T ss_pred EEEEEEChHH--cceEECCCchHHHHHHHHhCCEEEECcC----CCCCCCCceeEEEEEeCH---------HHHHHHHHH
Confidence 4456665544 7888876 89999999999999987531 111233334456788864 489999999
Q ss_pred HHHHHHc
Q 010778 184 VEEMLKQ 190 (501)
Q Consensus 184 IkEILKE 190 (501)
|.+++.+
T Consensus 69 I~~~i~e 75 (76)
T 1dtj_A 69 ISQRVTY 75 (76)
T ss_dssp HHHHCC-
T ss_pred HHHHHhc
Confidence 9998765
No 50
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.94 E-value=0.11 Score=42.14 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCC-CCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk-~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Av 181 (501)
...+|.|..- .++..+-+ |+++++|+++|||.|.... .+. ....++. +.|.| +. +.+++|+
T Consensus 14 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~i~~----~~~~~~~~er~--v~I~G-~~--------~~v~~A~ 76 (85)
T 2opv_A 14 TVQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDKP--LRIIG-DP--------YKVQQAC 76 (85)
T ss_dssp EEEEEEECTT--THHHHHTTTTHHHHHHHHHHTCEEEECS----SSCSSTTSCEE--EEEEE-CH--------HHHHHHH
T ss_pred EEEEEEeChh--heeeeECCCCHHHHHHHHHHCCEEEEcC----CCCCCCCCceE--EEEEe-CH--------HHHHHHH
Confidence 4567888754 48888877 9999999999999988854 111 1234554 46888 42 4899999
Q ss_pred HHHHHHHHc
Q 010778 182 AMVEEMLKQ 190 (501)
Q Consensus 182 alIkEILKE 190 (501)
.+|++++++
T Consensus 77 ~~I~~i~~e 85 (85)
T 2opv_A 77 EMVMDILRE 85 (85)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999999864
No 51
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=94.71 E-value=0.05 Score=43.05 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|..- .++..+.+ |.++++|+++|||.|.+... .++..--.+.|.|.. ..+++|+.
T Consensus 5 ~~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 66 (76)
T 2p2r_A 5 TSHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP-------VEGSTDRQVTITGSA---------ASISLAQY 66 (76)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC-------CCCCCeEEEEEEeCH---------HHHHHHHH
Confidence 4566666554 37888877 89999999999999988641 112222356788863 48999999
Q ss_pred HHHHHHHcC
Q 010778 183 MVEEMLKQG 191 (501)
Q Consensus 183 lIkEILKE~ 191 (501)
+|.+++.++
T Consensus 67 ~I~~~i~~E 75 (76)
T 2p2r_A 67 LINVRLSSE 75 (76)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHcc
Confidence 999999765
No 52
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=94.65 E-value=0.06 Score=43.28 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|..-- ++..+-+ |+++++|+++|||.|.+... .++..--.+.|.|.. +.+++|+.
T Consensus 6 ~~~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~sga~I~i~~~-------~~~~~~r~v~I~G~~---------~~v~~A~~ 67 (82)
T 1wvn_A 6 TTHELTIPNNL--IGCIIGRQGANINEIRQMSGAQIKIANP-------VEGSSGRQVTITGSA---------ASISLAQY 67 (82)
T ss_dssp EEEEEEEEGGG--HHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEchHh--ccceeCCCchhHHHHHHHhCCEEEEecC-------CCCCCceEEEEEcCH---------HHHHHHHH
Confidence 55677776544 7888877 89999999999999988642 122222345788865 48999999
Q ss_pred HHHHHHHcC
Q 010778 183 MVEEMLKQG 191 (501)
Q Consensus 183 lIkEILKE~ 191 (501)
+|.+++.++
T Consensus 68 ~I~~~i~~~ 76 (82)
T 1wvn_A 68 LINARLSSE 76 (82)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhh
Confidence 999998776
No 53
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.47 E-value=0.057 Score=45.88 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=52.3
Q ss_pred EEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHH
Q 010778 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (501)
Q Consensus 106 aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalI 184 (501)
.+|.|..- .++..|-| |+++++|+++|||.|.+...--+ ..+..--.+.|.|.. +.|++|+.+|
T Consensus 9 ~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~----~~~~~~r~V~I~G~~---------e~v~~A~~~I 73 (107)
T 2hh2_A 9 MTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLPP----NGDPNFKLFIIRGSP---------QQIDHAKQLI 73 (107)
T ss_dssp EEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT----TCCTTEEEEEEESCH---------HHHHHHHHHH
T ss_pred EEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC----CCCCCceEEEEECCH---------HHHHHHHHHH
Confidence 45666543 47888877 89999999999999988542111 112222456788843 4899999999
Q ss_pred HHHHHcCCC
Q 010778 185 EEMLKQGHA 193 (501)
Q Consensus 185 kEILKE~P~ 193 (501)
++++.+...
T Consensus 74 ~~~i~e~~~ 82 (107)
T 2hh2_A 74 EEKIEGPLC 82 (107)
T ss_dssp HHHSCSCCC
T ss_pred HHHHhcccc
Confidence 999987754
No 54
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=94.42 E-value=0.065 Score=43.90 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=52.7
Q ss_pred eeEEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHH
Q 010778 102 LIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 180 (501)
Q Consensus 102 ~~f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~A 180 (501)
..+..+|.|..- .++..+-| |.++++|+++|||.|.+... .+...++ .+.|.|.. +.+++|
T Consensus 12 ~~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-----~~~~~~~--~v~I~G~~---------e~v~~A 73 (89)
T 1j5k_A 12 PIITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDR--IITITGTQ---------DQIQNA 73 (89)
T ss_dssp CEEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC-----CSSSSEE--EEEEEEEH---------HHHHHH
T ss_pred CeEEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC-----CCCCCcc--EEEEEcCH---------HHHHHH
Confidence 346777777654 37888876 89999999999999988531 1112233 45788864 488999
Q ss_pred HHHHHHHHHcC
Q 010778 181 AAMVEEMLKQG 191 (501)
Q Consensus 181 valIkEILKE~ 191 (501)
+.+|++++++.
T Consensus 74 ~~~I~~~i~e~ 84 (89)
T 1j5k_A 74 QYLLQNSVKQY 84 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 55
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=94.37 E-value=0.066 Score=44.17 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|..- .++..|-+ |.++++|+++|||.|.+...- ++..--.+.|.|.. +.|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~---------e~v~~A~~ 76 (92)
T 1x4n_A 15 MTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTP---------ESVQSAKR 76 (92)
T ss_dssp EEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCH---------HHHHHHHH
Confidence 6677777654 37888877 899999999999999885421 12223456788863 48999999
Q ss_pred HHHHHHHcCC
Q 010778 183 MVEEMLKQGH 192 (501)
Q Consensus 183 lIkEILKE~P 192 (501)
+|++++.+..
T Consensus 77 ~I~~~i~~~~ 86 (92)
T 1x4n_A 77 LLDQIVEKGR 86 (92)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999998764
No 56
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.22 E-value=0.078 Score=43.92 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=53.2
Q ss_pred eeEEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHH
Q 010778 102 LIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 180 (501)
Q Consensus 102 ~~f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~A 180 (501)
..+..+|.|..- .++..|-| |+++++|+++|||.|.+...-.+ ....++. +.|.|.. +.|++|
T Consensus 13 ~~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~--v~I~G~~---------~~v~~A 76 (94)
T 1x4m_A 13 GNAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKP--LRITGDP---------YKVQQA 76 (94)
T ss_dssp CCEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEE--EEEEECT---------TTHHHH
T ss_pred CcEEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceE--EEEEeCH---------HHHHHH
Confidence 336777888654 48888877 99999999999999887431110 1123444 5688843 378999
Q ss_pred HHHHHHHHHcC
Q 010778 181 AAMVEEMLKQG 191 (501)
Q Consensus 181 valIkEILKE~ 191 (501)
+.+|++++++.
T Consensus 77 ~~~I~~~i~~~ 87 (94)
T 1x4m_A 77 KEMVLELIRDQ 87 (94)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHhcc
Confidence 99999999764
No 57
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.21 E-value=0.23 Score=41.73 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=54.8
Q ss_pred CceeEEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHH
Q 010778 100 DELIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVD 178 (501)
Q Consensus 100 de~~f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd 178 (501)
+......+|.|..-- ++..|-+ |+++++|+++|||.|.+...- ++ ....++ .+.|.|.. +.++
T Consensus 11 ~~ap~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~~tga~I~I~~~~--~~-~~~~~~--~V~I~G~~---------~~v~ 74 (104)
T 1we8_A 11 ENTPVFEQLSVPQRS--VGRIIGRGGETIRSICKASGAKITCDKES--EG-TLLLSR--LIKISGTQ---------KEVA 74 (104)
T ss_dssp SSCEEEEEEEEETTT--HHHHHTTTSHHHHHHHHHHCCEEEECCSS--CC-SSSSEE--EEEEEEEH---------HHHH
T ss_pred CCCCEEEEEEEChhh--eeeeECCCCHHHHHHHHHHCCEEEEecCC--CC-CCCCcc--eEEEEcCH---------HHHH
Confidence 334466788886544 8889977 999999999999999885321 00 011233 45788865 3689
Q ss_pred HHHHHHHHHHHcCC
Q 010778 179 HAAAMVEEMLKQGH 192 (501)
Q Consensus 179 ~AvalIkEILKE~P 192 (501)
+|+.+|++++.+++
T Consensus 75 ~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 75 AAKHLILEKVSEDE 88 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCh
Confidence 99999999997753
No 58
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.08 E-value=0.11 Score=44.51 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=50.7
Q ss_pred EEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHH
Q 010778 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (501)
Q Consensus 106 aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalI 184 (501)
.+|.|..-- ++..|-| ++++++|+++|||.|.+.- .. +...--.+.|.|.. +.+++|+.+|
T Consensus 13 ~~i~Ip~~~--iG~IIGkgG~~Ik~I~~~TGakI~I~~-----~~--~~~~er~V~I~G~~---------e~v~~A~~~I 74 (106)
T 2hh3_A 13 IDVPVPRHS--VGVVIGRSGEMIKKIQNDAGVRIQFKQ-----DD--GTGPEKIAHIMGPP---------DRCEHAARII 74 (106)
T ss_dssp EEEEEETTT--HHHHHTTTTHHHHHHHHHHTCEEEECS-----SC--SSSSEEEEEEESSH---------HHHHHHHHHH
T ss_pred EEEEECHHH--cCccCCCCcHHHHHHHHHHCcEEEEec-----CC--CCCceeEEEEEeCH---------HHHHHHHHHH
Confidence 467775544 7888877 9999999999999998853 11 11222346788863 4899999999
Q ss_pred HHHHHcCC
Q 010778 185 EEMLKQGH 192 (501)
Q Consensus 185 kEILKE~P 192 (501)
++++.+..
T Consensus 75 ~~ii~~~~ 82 (106)
T 2hh3_A 75 NDLLQSLR 82 (106)
T ss_dssp HHHHHHHC
T ss_pred HHHHhccc
Confidence 99998753
No 59
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.94 E-value=0.13 Score=42.14 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=52.0
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|.+ ..+++.+-| |+++++|+++|||.|.+-. . ++++ .+.|+|.. +.+++|+.
T Consensus 10 ~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~---~~~~--~v~ItG~~---------e~v~~A~~ 68 (83)
T 2dgr_A 10 TTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R---DKEP--VFAVTGMP---------ENVDRARE 68 (83)
T ss_dssp EEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S---SSCC--EEEEEECT---------TTHHHHHH
T ss_pred eEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C---CCCC--eEEEEcCH---------HHHHHHHH
Confidence 577888887 569999977 9999999999999988732 1 2233 36788876 37899999
Q ss_pred HHHHHHHcC
Q 010778 183 MVEEMLKQG 191 (501)
Q Consensus 183 lIkEILKE~ 191 (501)
+|.+++...
T Consensus 69 ~I~~~i~~r 77 (83)
T 2dgr_A 69 EIEAHITLR 77 (83)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 999987643
No 60
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.92 E-value=0.024 Score=63.08 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=32.3
Q ss_pred eeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010778 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASR 304 (501)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~~E~~~~r 304 (501)
.+|.+|||+|.++|.|+++||++|-|-.. =.|+|++.+.+.+++|+++++.|.++ .++
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~d----------------G~v~Is~~~~~~~~~a~~~i~~i~~p--~~~---- 665 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIEDD----------------GTIYIGAADGPAAEAARATINGIANP--TSP---- 665 (757)
T ss_dssp -------------CTTCCCCCSCC------------------------CCCBSSHHHHCC--------------------
T ss_pred HeehcccccceeeehhhHhhCCEEEecCC----------------ceEEEecCCHHHHHHHHHHHHHhcch--hhc----
Confidence 47899999999999999999999977542 24677788888899999888887632 111
Q ss_pred ccccccccCCCCchhhhcccccccccccCCcccchhhcccccc
Q 010778 305 VSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNL 347 (501)
Q Consensus 305 ~~~~k~y~~~pppqq~~~gv~~~~~~~~~~~~~~~~~~~~~~~ 347 (501)
.....|. --+.++..+|..-.+.. ..-||.|--++
T Consensus 666 -~vG~i~~------G~V~~i~~fGaFV~l~~-g~eGLvHiSel 700 (757)
T 1e3p_A 666 -EVGERIL------GSVVKTTTFGAFVSLLP-GKDGLLHISQI 700 (757)
T ss_dssp --------------CBEEECC-CSCEECCC----CCCCC----
T ss_pred -ccccEEE------EEEEEccccEEEEEEcC-CcEEEEEhHHh
Confidence 1122222 24666777774444322 25567765544
No 61
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=93.63 E-value=0.11 Score=41.09 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..++.|.. ..++..+-+ |+++++|+++|||.|.+... + ..++ .+.|.|.. +.+++|+.
T Consensus 5 ~~~~i~ip~--~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~---~~er--~v~I~G~~---------~~v~~A~~ 64 (73)
T 2axy_A 5 LTIRLLMHG--KEVGSIIGKKGESVKKMREESGARINISEG----N---CPER--IITLAGPT---------NAIFKAFA 64 (73)
T ss_dssp EEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHCCEEEECSS----C---CSEE--EEEEEECH---------HHHHHHHH
T ss_pred EEEEEEECh--hHeeeEECCCCHHHHHHHHHHCCEEEEecC----C---CCcE--EEEEEeCH---------HHHHHHHH
Confidence 445566654 337778877 89999999999999987432 1 1233 45788863 48999999
Q ss_pred HHHHHHHcC
Q 010778 183 MVEEMLKQG 191 (501)
Q Consensus 183 lIkEILKE~ 191 (501)
+|.++|.++
T Consensus 65 ~I~~~l~ed 73 (73)
T 2axy_A 65 MIIDKLEED 73 (73)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999864
No 62
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.62 E-value=0.018 Score=63.78 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 010778 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 294 (501)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~ 294 (501)
.++.+|||+|.+++.|.++||++|-|... -.++|++.+.+.+++|+++++.|+.
T Consensus 570 ki~~~ig~gGk~I~~I~~~~G~~IdI~~d----------------g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 570 KIKDVIGKGGSVIRALTEETGTTIEIEDD----------------GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HhcccccccceeeeeeehhhCceEEecCC----------------ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999977642 3578888899999999999988864
No 63
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=93.62 E-value=0.081 Score=48.21 Aligned_cols=69 Identities=9% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc
Q 010778 222 SLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 301 (501)
Q Consensus 222 ~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE~LL~tV~~E~~ 301 (501)
+-.+++.|+||+|+.|++||..|++.|+|.=- ++..---|.|-|... .=.+||.|+++|.+--++...
T Consensus 63 E~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-----------~s~g~tEVtIfG~~~-~Q~rak~MI~sLA~~hr~~~~ 130 (140)
T 3v69_A 63 EPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-----------GPERRAEIWIFGPPP-FRRDVDRMLTDLAHYCRMKLM 130 (140)
T ss_dssp CGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-----------CTTSCEEEEEESCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhcccCCCcCccchHHhhcceeEEEecc-----------CCCCcEEEEEECCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999831 112225577777644 445789999999988877764
Q ss_pred c
Q 010778 302 A 302 (501)
Q Consensus 302 ~ 302 (501)
+
T Consensus 131 ~ 131 (140)
T 3v69_A 131 E 131 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=93.55 E-value=0.14 Score=40.46 Aligned_cols=65 Identities=22% Similarity=0.165 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
...+|.|+.-- .|..+.+ |.++.+|+++|||.|..- +. ++..-.+.|.|.. +++++|+.
T Consensus 5 ~~~~i~I~~~~--ig~iIG~gG~~I~~I~e~tg~~I~i~-----~~----g~~~~~V~I~G~~---------~~v~~A~~ 64 (71)
T 1vig_A 5 DYVEINIDHKF--HRHLIGKSGANINRIKDQYKVSVRIP-----PD----SEKSNLIRIEGDP---------QGVQQAKR 64 (71)
T ss_dssp EEEEEEECSSH--HHHHTCSSCCHHHHHHHHTCCEEECC-----CC----CSSSEEEEEEESS---------HHHHHHHH
T ss_pred EEEEEEECHHH--hhhhcCCCCccHHHHHHHHCCEEEEC-----CC----CCcccEEEEEcCH---------HHHHHHHH
Confidence 45677777654 8999976 999999999999998762 21 2233466889974 47999999
Q ss_pred HHHHHH
Q 010778 183 MVEEML 188 (501)
Q Consensus 183 lIkEIL 188 (501)
+|++++
T Consensus 65 ~I~~i~ 70 (71)
T 1vig_A 65 ELLELA 70 (71)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 998874
No 65
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.46 E-value=0.16 Score=42.09 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|+.-- .|..+-+ |.++++|+++|||.|..-. .. +.+. .+.|.|.. ..+++|+.
T Consensus 17 ~t~~i~Ip~~~--ig~IIG~gG~~Ik~I~~etg~~I~i~~-----~~--~~~~--~V~I~G~~---------e~v~~A~~ 76 (94)
T 2cte_A 17 ASATVAIPKEH--HRFVIGKNGEKLQDLELKTATKIQIPR-----PD--DPSN--QIKITGTK---------EGIEKARH 76 (94)
T ss_dssp EEEEEECCTTT--HHHHHCSSSCHHHHHHHHTTCCCBCCC-----TT--SSCC--EEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChHH--eeeeECCCChhHHHHHHHHCCEEEeCC-----CC--CCCC--eEEEEECH---------HHHHHHHH
Confidence 67888888655 8999988 7999999999999987732 11 1122 56788863 48999999
Q ss_pred HHHHHHHcC
Q 010778 183 MVEEMLKQG 191 (501)
Q Consensus 183 lIkEILKE~ 191 (501)
+|++++++.
T Consensus 77 ~I~~i~~~~ 85 (94)
T 2cte_A 77 EVLLISAEQ 85 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998764
No 66
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=92.60 E-value=0.081 Score=47.31 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=54.0
Q ss_pred HHHHHhhhCCeEeeecce-eC--CCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc
Q 010778 127 QEEIQKCTGAVVITRGKY-RL--PNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQT 200 (501)
Q Consensus 127 q~eI~e~TGAsItTRG~Y-~P--Pgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalIkEILKE~P~~~pp~~~ 200 (501)
++||....... .+ ++ +...+++++|-|......++++|.+.|.+..++...+|++||+..++|.+|.+|
T Consensus 50 ieeIt~kL~~g-----~l~i~~~~~~RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DY 121 (124)
T 4fxw_B 50 IEDLTRKLRTG-----DLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADY 121 (124)
T ss_dssp HHHHHHHHHHC-----CCCCCSSTTSSCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC-
T ss_pred HHHHHHHHhcC-----CcCCCCCcccCCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 66776654432 22 33 234789999999987777888898889999999999999999999999998876
No 67
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=92.18 E-value=0.32 Score=39.38 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=48.6
Q ss_pred EEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHH
Q 010778 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (501)
Q Consensus 107 EIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalIk 185 (501)
+|.|..- .++..+.+ |.++.+|+++|||.|.+... +...++..--.+.|.|.. +.+++|+.+|.
T Consensus 6 ~i~IP~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~g~~~r~v~I~G~~---------~~v~~A~~~I~ 70 (87)
T 1ec6_A 6 EIAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYLIS 70 (87)
T ss_dssp EEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCT----TCBSTTSCEEEEEEESSH---------HHHHHHHHHHH
T ss_pred EEEEChH--HcCeeECCCcHhHHHHHHHhCCEEEEccC----CCCCCCCCceEEEEEcCH---------HHHHHHHHHHH
Confidence 4444433 36777776 89999999999999987531 111123333456788964 48999999999
Q ss_pred HHHHcC
Q 010778 186 EMLKQG 191 (501)
Q Consensus 186 EILKE~ 191 (501)
+++.+.
T Consensus 71 ~~i~~~ 76 (87)
T 1ec6_A 71 QRVTYE 76 (87)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998764
No 68
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.10 E-value=0.22 Score=42.32 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|+.-- .|..+.+ |.++.+|+++|||.|..- +. ++.+-.+.|.|.. +.+++|+.
T Consensus 17 ~~~~i~Ip~~~--ig~IIG~gG~~Ir~I~eetg~~I~I~-----~~----g~~~~~V~I~G~~---------e~v~~A~~ 76 (104)
T 2ctk_A 17 VTIEVEVPFDL--HRYVIGQKGSGIRKMMDEFEVNIHVP-----AP----ELQSDIIAITGLA---------ANLDRAKA 76 (104)
T ss_dssp EEEEEECCHHH--HHHHHCSSSHHHHHHHHHTCCEEECC-----CT----TTTCCEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChHH--ccceeCCCchHHHHHHHHHCCEEEec-----CC----CCCcceEEEEcCH---------HHHHHHHH
Confidence 66778887544 8999977 999999999999998762 21 1112367788864 47899999
Q ss_pred HHHHHHHc
Q 010778 183 MVEEMLKQ 190 (501)
Q Consensus 183 lIkEILKE 190 (501)
+|+.++++
T Consensus 77 ~I~~i~~e 84 (104)
T 2ctk_A 77 GLLERVKE 84 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988765
No 69
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.06 E-value=0.45 Score=39.69 Aligned_cols=69 Identities=6% Similarity=0.046 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
+..+|.|+.-- .|..+-+ |.++.+|+++|||.|.. |+.. +...-.+.|.|.. +.+++|+.
T Consensus 17 vt~~i~Ip~~~--ig~IIG~gG~~Ir~I~e~tg~~I~i-----~~~g---~~~~~~V~I~G~~---------e~v~~A~~ 77 (95)
T 2ctm_A 17 VSEDVPLDHRV--HARIIGARGKAIRKIMDEFKVDIRF-----PQSG---APDPNCVTVTGLP---------ENVEEAID 77 (95)
T ss_dssp CCEEEECCTTT--HHHHHCSSSCHHHHHHHHHTCEEEC-----CCTT---CSCTTEEEEESCH---------HHHHHHHH
T ss_pred EEEEEEECHHH--ccccCCCCcchHHHHHHHHCCeEEe-----cCCC---CCCCcEEEEEcCH---------HHHHHHHH
Confidence 56788888665 8999976 99999999999999887 2211 1123346788864 47899999
Q ss_pred HHHHHHHcC
Q 010778 183 MVEEMLKQG 191 (501)
Q Consensus 183 lIkEILKE~ 191 (501)
+|+.++++-
T Consensus 78 ~I~~i~~e~ 86 (95)
T 2ctm_A 78 HILNLEEEY 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 70
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=90.89 E-value=0.74 Score=38.46 Aligned_cols=70 Identities=4% Similarity=0.001 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Ava 182 (501)
|...|.|+.-- ++..+-+ |.++++|+++|||.|..-- .+.....+ -.+.|.|.. +.+++|+.
T Consensus 17 ~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~etg~~I~i~~----~g~~~~~~--~~V~I~G~~---------e~v~~A~~ 79 (97)
T 2ctl_A 17 FKLSVTVDPKY--HPKIIGRKGAVITQIRLEHDVNIQFPD----KDDGNQPQ--DQITITGYE---------KNTEAARD 79 (97)
T ss_dssp CEEEEECCTTT--HHHHSCSSSCHHHHHHHHHTCEEECCC----TTTCSSCS--SEEEEESCH---------HHHHHHHH
T ss_pred eeEEEEECHHH--hhhcCCCCchhHHHHHHHHCCEEEecC----CCCCCCCc--cEEEEEeCH---------HHHHHHHH
Confidence 67788887654 8999987 9999999999999987621 11111233 345788863 47899999
Q ss_pred HHHHHHHc
Q 010778 183 MVEEMLKQ 190 (501)
Q Consensus 183 lIkEILKE 190 (501)
+|..++++
T Consensus 80 ~I~~iv~e 87 (97)
T 2ctl_A 80 AILRIVGE 87 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 71
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=90.85 E-value=0.22 Score=47.06 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=51.9
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEE----eCCHHHHHHH
Q 010778 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS----SNNPKSLEEA 285 (501)
Q Consensus 210 eeKI~Ipve~~P~FNfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Is----a~~~e~v~~A 285 (501)
+.+|.||-+ -+|.|||.+|.+++.|++++||+|.|-.+ + =-+.|. ..|+..+.+|
T Consensus 5 ~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~--------------~-~~V~i~t~~~t~dp~~i~KA 63 (191)
T 1tua_A 5 RIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTE--------------N-SMVIVEPEAEGIPPVNLMKA 63 (191)
T ss_dssp CEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETT--------------T-TEEEEEESSTTSCHHHHHHH
T ss_pred ceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcC--------------C-CeEEEEeCCCCCCHHHHHHH
Confidence 457777743 58999999999999999999999999642 1 123344 3688999999
Q ss_pred HHHHHHHHHHHHH
Q 010778 286 KRLAENLLDTISA 298 (501)
Q Consensus 286 k~LiE~LL~tV~~ 298 (501)
++++..+...+..
T Consensus 64 ~dlI~ai~rgf~~ 76 (191)
T 1tua_A 64 AEVVKAISLGFPP 76 (191)
T ss_dssp HHHHHHHHHTCCH
T ss_pred HHHHHHHHcCCCH
Confidence 9999887765443
No 72
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=87.48 E-value=0.58 Score=39.22 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhh-CCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCT-GAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~T-GAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Av 181 (501)
....|.|+.- ..|..+-+ |.++.+|+++| |+.|.. |+. +...-...|.|.. ++|++|+
T Consensus 17 vt~~i~Ip~~--~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~~----g~~~~~V~I~G~~---------~~v~~A~ 76 (95)
T 2ctj_A 17 AEVEVSIPAK--LHNSLIGTKGRLIRSIMEECGGVHIHF-----PVE----GSGSDTVVIRGPS---------SDVEKAK 76 (95)
T ss_dssp CCEEEECCHH--HHHHHHCSSSHHHHHHHHHHTSCEEEC-----CCT----TTTCCEEEEESCH---------HHHHHHH
T ss_pred EEEEEEECHH--HHhhhCCCCchhHHHHHHHcCCCEEEe-----CCC----CCCcceEEEEcCH---------HHHHHHH
Confidence 3556777643 47888877 79999999999 999854 322 2233356789975 4899999
Q ss_pred HHHHHHHHcC
Q 010778 182 AMVEEMLKQG 191 (501)
Q Consensus 182 alIkEILKE~ 191 (501)
++|++++.+-
T Consensus 77 ~~I~~iv~e~ 86 (95)
T 2ctj_A 77 KQLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999998753
No 73
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=78.79 E-value=5.6 Score=33.58 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhh-hCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKC-TGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~-TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Av 181 (501)
+..+|+|.--= .|+.+.+ |+++.+|.+. +++.| .+|. ++. -+.|+|+. +.|++|.
T Consensus 27 ~t~~i~vp~~~--h~~IIG~~G~~Ik~i~~~~~~v~I-----~fp~-----~~~--~ItI~G~~---------~~V~~a~ 83 (102)
T 2ctf_A 27 TVSSVAAPSWL--HRFIIGKKGQNLAKITQQMPKVHI-----EFTE-----GED--KITLEGPT---------EDVSVAQ 83 (102)
T ss_dssp EEEEEECCSTT--HHHHHTTTTCHHHHHHHHCSSSEE-----EECS-----SSC--EEEEEECH---------HHHHHHH
T ss_pred EEEEEEeCHHH--HhhhcCCCCccHHHHHHHcCCcEE-----EeCC-----CCC--EEEEECCH---------HHHHHHH
Confidence 67888887443 7999966 9999999996 57766 2554 222 57899985 4799999
Q ss_pred HHHHHHHHc
Q 010778 182 AMVEEMLKQ 190 (501)
Q Consensus 182 alIkEILKE 190 (501)
.+|+.++++
T Consensus 84 ~~I~~~v~e 92 (102)
T 2ctf_A 84 EQIEGMVKD 92 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988875
No 74
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=65.44 E-value=2.7 Score=35.49 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=46.5
Q ss_pred EEEEEEcCCCCccccceecc-hhHHHHHHhhhCCe-EeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 010778 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAV-VITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (501)
Q Consensus 104 f~aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAs-ItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~Av 181 (501)
|..++.|+- ...|..+-+ |.++++|+++||+. |...- ++. .+.|.|.+. +++++|+
T Consensus 15 ~i~~i~I~~--dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG--~V~I~g~~~--------ea~~~A~ 72 (91)
T 2cpq_A 15 FHEEFVVRE--DLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTG--TFRIYGESA--------DAVKKAR 72 (91)
T ss_dssp EEEEEECCH--HHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTT--EEEEEESSH--------HHHHHHH
T ss_pred eEEEEEECh--HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCC--EEEEEECCH--------HHHHHHH
Confidence 778888873 347888976 99999999999997 88731 122 346888763 5888888
Q ss_pred HHHHHH
Q 010778 182 AMVEEM 187 (501)
Q Consensus 182 alIkEI 187 (501)
++|+.+
T Consensus 73 ~~I~~i 78 (91)
T 2cpq_A 73 GFLEFV 78 (91)
T ss_dssp HHHSCC
T ss_pred HHHHhh
Confidence 888765
No 75
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=43.76 E-value=22 Score=33.78 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=37.2
Q ss_pred eeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 010778 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 286 (501)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak 286 (501)
.+.+++|++|..++.|.+.++|+|.| |+ .-.++|.+.+.+....+.
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~v-G~---------------NG~IWi~~~~~~~~~~~~ 203 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFV-AR---------------NGRIHLECPNEDLEAIAV 203 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEE-ET---------------TTEEEEECSCHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEE-eC---------------CCEEEEecCCHHHHHHHH
Confidence 57789999999999999999999988 42 247999999987655433
No 76
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=40.58 E-value=18 Score=39.68 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred EEEEcCCCCccccceecc-hhHHHHHHhhhCCeEeeecceeCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHH
Q 010778 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (501)
Q Consensus 106 aEIeINDlPq~vR~~LTK-~~Tq~eI~e~TGAsItTRG~Y~PPgk~~~~EpPLYL~Ieg~Tq~kdtaEri~aVd~AvalI 184 (501)
..|.|+ |.+.|-.|.+ |.++++|+++||+.|..- ++- -..|.+.+. .++++|+++|
T Consensus 569 ~~~~I~--~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G--~V~I~~~~~--------~~~~~A~~~I 625 (630)
T 3u1k_A 569 ETVQVP--LSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEE--TFSVFAPTP--------SAMHEARDFI 625 (630)
T ss_dssp EEEECC--HHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSS--EEEEEESSH--------HHHHHHHHHT
T ss_pred EEEEeC--hhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCc--EEEEEeCCH--------HHHHHHHHHH
Confidence 455555 4446777866 899999999999998763 122 235888763 4789999999
Q ss_pred HHHHH
Q 010778 185 EEMLK 189 (501)
Q Consensus 185 kEILK 189 (501)
+.|++
T Consensus 626 ~~i~~ 630 (630)
T 3u1k_A 626 TEICK 630 (630)
T ss_dssp TC---
T ss_pred HHHhC
Confidence 88763
No 77
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=33.99 E-value=7.9 Score=35.02 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=25.4
Q ss_pred eEEEeCCCchhHHHHHHhhCCEEEEee
Q 010778 226 AARIRGPNDQYINHIMNETGATVLLRG 252 (501)
Q Consensus 226 vgrIIGP~GstlK~Iq~ETGaKI~IRG 252 (501)
+|..||++|+.++.|++|.|-||-|--
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEE
Confidence 899999999999999999999997775
No 78
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=33.23 E-value=82 Score=28.48 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=26.9
Q ss_pred HHHHHhhCCEE--EEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHH
Q 010778 238 NHIMNETGATV--LLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEA 285 (501)
Q Consensus 238 K~Iq~ETGaKI--~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~A 285 (501)
.++.+|.+-.| +|-|.|||. |-+...++|-+.+++|
T Consensus 63 erl~~efni~v~y~imgsgsgv------------m~i~f~gddlea~eka 100 (170)
T 4hhu_A 63 ERLKAEFNINVQYQIMGSGSGV------------MVIVFEGDDLEALEKA 100 (170)
T ss_dssp HHHHHHHTCEEEEEEECTTCCE------------EEEEEECSCHHHHHHH
T ss_pred HHHHHhcceEEEEEEEeCCceE------------EEEEEecCcHHHHHHH
Confidence 35566677666 688888875 5677888999988887
No 79
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=32.87 E-value=1.5e+02 Score=25.07 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=32.3
Q ss_pred hhHHHHHHhh-CCEEEEeecCCCCCCCCCCCCCCCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q 010778 235 QYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQP-LHLFLSSNNPKSLEEAKRLAENLLDTISAE 299 (501)
Q Consensus 235 stlK~Iq~ET-GaKI~IRGRGSg~~E~~~g~EsdEP-LHV~Isa~~~e~v~~Ak~LiE~LL~tV~~E 299 (501)
..+.-|+-+. +.+|.||-- | .|| ++|++++.+.+ .|.++++.+.+.|.+.
T Consensus 45 ~~idgl~~~~~~gwvlvRpS--G----------TEP~irvy~Ea~~~~---~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPS--G----------TEDIVRVYAEANSQE---SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECS--S----------SSSSEEEEEEESSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeC--C----------CccEEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 3455555553 458888863 2 355 99999999875 5555666666666544
No 80
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=29.95 E-value=29 Score=33.06 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred ceeEEEeCCCchhHHHHHHhhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCH--HHHHHHHHHH
Q 010778 224 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNP--KSLEEAKRLA 289 (501)
Q Consensus 224 NfvgrIIGP~GstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~--e~v~~Ak~Li 289 (501)
+.+.+++|+++..++.|.+.++|.|.| |. + -.++|.+.+. ..+.+|.+.|
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~--------N-------G~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ--------N-------GLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT--------T-------SEEEEESCHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC--------C-------cEEEEeCCchhHHHHHHHHHHH
Confidence 357789999999999999999999988 31 1 4688997655 2233444444
No 81
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=27.12 E-value=26 Score=27.83 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.3
Q ss_pred ccCCCCCcCCChHHHH
Q 010778 399 SGYEGIYPQATPLQQV 414 (501)
Q Consensus 399 ~gy~~iypqatplqqv 414 (501)
-|||+|+|+ |+.-++
T Consensus 43 vGyGdi~P~-t~~~r~ 57 (82)
T 3ldc_A 43 VGYGDYSPH-TPLGMY 57 (82)
T ss_dssp CCCCSSCCC-SHHHHH
T ss_pred cCCCCCCCC-CccHHH
Confidence 599999998 555544
No 82
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=26.75 E-value=73 Score=26.69 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=28.6
Q ss_pred eEeeecceeCCCCCCCCCCCeEEE-EEeccchhhHHHHHHHHHHHHHHHHHHHHcC
Q 010778 137 VVITRGKYRLPNAPPDGEKPLYLH-ISAGAHLKETAERILAVDHAAAMVEEMLKQG 191 (501)
Q Consensus 137 sItTRG~Y~PPgk~~~~EpPLYL~-Ieg~Tq~kdtaEri~aVd~AvalIkEILKE~ 191 (501)
.|.++=.|+ -+|+|-. +++.+ ++++| +++++|++.|.+.++..
T Consensus 41 ~~~vkI~~v--------gaP~Y~i~~~~~D--~k~ge--~~L~~ai~~i~~~i~~~ 84 (93)
T 2qn6_B 41 LLNIKIYTI--------GAPRYRVDVVGTN--PKEAS--EALNQIISNLIKIGKEE 84 (93)
T ss_dssp EEEEEEEES--------STTEEEEEEEESC--HHHHH--HHHHHHHHHHHHHHHHT
T ss_pred cceEEEEEE--------cCCeEEEEEEecC--HHHHH--HHHHHHHHHHHHHHHHh
Confidence 344555555 4677743 34433 67777 78999999999988763
No 83
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=21.16 E-value=48 Score=28.77 Aligned_cols=15 Identities=40% Similarity=0.849 Sum_probs=11.6
Q ss_pred ccCCCCCcCCChHHHH
Q 010778 399 SGYEGIYPQATPLQQV 414 (501)
Q Consensus 399 ~gy~~iypqatplqqv 414 (501)
-|||+|+|. |++-++
T Consensus 58 vGyGDi~P~-t~~gr~ 72 (137)
T 4h33_A 58 VGYGDIVPV-TPIGRI 72 (137)
T ss_dssp CCCSSSCCC-SHHHHH
T ss_pred ccCCCCCCC-CHhHHH
Confidence 599999997 665554
No 84
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=21.00 E-value=80 Score=26.60 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=33.8
Q ss_pred hhCCEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHH-HHHHHHHHHHH
Q 010778 243 ETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLE-EAKRLAENLLD 294 (501)
Q Consensus 243 ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~-~Ak~LiE~LL~ 294 (501)
..|.++.|+|+|--.. + ...+|+|.|.-.-|+.+. +.++++++|++
T Consensus 49 ~~G~~~rl~G~G~p~~----~--~~GDL~v~~~V~~P~~Ls~~q~~~l~~l~~ 95 (109)
T 3i38_A 49 QAGQRLRIKGKGLVSK----T--HTGDLFAVIKIVMPTKPDEKARELWQQLAA 95 (109)
T ss_dssp CTTCEEEETTCSCBCS----S--CBCCEEEEEEECCCSSCCHHHHHHHHHHHH
T ss_pred CcCeEEEECCccCCCC----C--CCcCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999997541 1 356799999888887754 45777777765
No 85
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.47 E-value=50 Score=28.29 Aligned_cols=15 Identities=33% Similarity=0.694 Sum_probs=11.5
Q ss_pred ccCCCCCcCCChHHHH
Q 010778 399 SGYEGIYPQATPLQQV 414 (501)
Q Consensus 399 ~gy~~iypqatplqqv 414 (501)
-|||+|+|. |+..++
T Consensus 55 vGyGd~~P~-t~~~r~ 69 (139)
T 3eff_K 55 VGYGDLYPV-TLWGRL 69 (139)
T ss_dssp CCCSSSCCC-SSHHHH
T ss_pred ccCCCCcCC-CcCHHH
Confidence 699999997 555554
No 86
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=20.30 E-value=1e+02 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=24.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q 010778 270 LHLFLSSNNPKSLEEAKRLAENLLDTISA 298 (501)
Q Consensus 270 LHV~Isa~~~e~v~~Ak~LiE~LL~tV~~ 298 (501)
-||+|. .+++..++|++.+++|++.+..
T Consensus 11 ~hIli~-~~~~~~~~a~~~A~~i~~~l~~ 38 (112)
T 3gpk_A 11 GEIFLA-ATEENKPQVFANAEKIVEQLKQ 38 (112)
T ss_dssp EEEEEE-CCGGGHHHHHHHHHHHHHHHHT
T ss_pred EEEEEe-CChhhHHHHHHHHHHHHHHHHC
Confidence 589998 5667889999999999999875
Done!