BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010780
(501 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NS00|C1GLT_HUMAN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Homo sapiens GN=C1GALT1 PE=1 SV=1
Length = 363
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 163 AIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQ 222
I+ + V E + L+D WF+ DDDT LDNL +LSKYD E Y G + +++
Sbjct: 147 TIKAFQYVHEHY---LEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRFKPYVK 203
Query: 223 NLAFYYGMGFGGGGFAIS-YALAKALEKIQ-DECLHRNPSLYGSDERIFACMMELGVPLT 280
G GG G+ +S AL + ++ + D+C H + D + CM + V
Sbjct: 204 Q-----GYMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSI---EDLALGRCMEIMNVEA- 254
Query: 281 KHPGFHQLDIYGDLSGILMAHPVAPILSLHHL 312
GD + P + HHL
Sbjct: 255 -----------GDSRDTIGKETFHPFVPEHHL 275
>sp|Q0VC84|C1GLT_BOVIN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Bos taurus GN=C1GALT1 PE=2 SV=1
Length = 368
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGF 237
L+D WF+ DDDT LDNL +LSKY+ E Y G + +++ G GG G+
Sbjct: 159 LEDADWFMKADDDTYVILDNLRWLLSKYNPEEPIYFGRRFKPYVKQ-----GYMSGGAGY 213
Query: 238 AIS-YALAKALEKIQ-DECLH 256
+S AL + +E + D+C H
Sbjct: 214 VLSKEALKRFVEAFKTDKCTH 234
>sp|P79948|LFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Xenopus
laevis GN=lfng PE=2 SV=1
Length = 375
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYP------------SESHLQNLAFY 227
D +WF DDD + L ++LS+Y H YIG P SES+++ + F+
Sbjct: 188 DKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIGKPSLDRPIQATERISESNMRPVNFW 247
Query: 228 YGMGFGGGGFAISYALA 244
+ GG GF IS LA
Sbjct: 248 FAT--GGAGFCISRGLA 262
>sp|Q6Y288|B3GLT_HUMAN Beta-1,3-glucosyltransferase OS=Homo sapiens GN=B3GALTL PE=1 SV=2
Length = 498
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 183 WFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYA 242
W V+ DDDT+ + L +LS YD E ++G Y GGGG S
Sbjct: 344 WLVIVDDDTLISISRLQHLLSCYDSGEPVFLG--ERYGYGLGTGGYSYITGGGGMVFSRE 401
Query: 243 LAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQ 287
+ L + C + D + C LG+P+T P FHQ
Sbjct: 402 AVRRLLASKCRCYSNDAP---DDMVLGMCFSGLGIPVTHSPLFHQ 443
>sp|Q9JJ05|C1GLT_RAT Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Rattus norvegicus GN=C1galt1 PE=1 SV=1
Length = 363
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGF 237
L+D WF+ DDDT LDNL +LSKY+ + Y G + +++ G GG G+
Sbjct: 159 LEDADWFMKADDDTYVILDNLRWLLSKYNPEQPIYFGRRFKPYVKQ-----GYMSGGAGY 213
Query: 238 AIS-YALAKALEKIQDE-CLH 256
+S AL + ++ + E C H
Sbjct: 214 VLSKEALRRFVDAFKTEKCTH 234
>sp|Q8BHT6|B3GLT_MOUSE Beta-1,3-glucosyltransferase OS=Mus musculus GN=B3galtl PE=2 SV=3
Length = 489
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 181 VRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAIS 240
+ W V+ DDDT+ + L +LS YD ++ ++G Y GGGG S
Sbjct: 333 ISWLVIVDDDTLISISRLRHLLSCYDSSDPVFLG--ERYGYGLGTGGYSYVTGGGGMVFS 390
Query: 241 YALAKALEKIQDECLHRNPSLYGSDERIFA-CMMELGVPLTKHPGFHQ 287
+ L C + D+ + C LGVP+T P FHQ
Sbjct: 391 REAIRRLLVSSCRCYSND----APDDMVLGMCFSGLGVPVTHSPLFHQ 434
>sp|Q6GNL1|C1GLT_XENLA Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Xenopus laevis GN=c1galt1 PE=2 SV=1
Length = 360
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 131 VKNSSIDHLLPPIKVSGDTSKFQYKNPIGT---RDAI--RISRIVSESFRLGLKDVRWFV 185
VKNS H + +S T + +GT RD + + R + + L + WF
Sbjct: 95 VKNSWTRHCNVALFMSSITDEDFPAIGLGTGEGRDKLYWKTIRAFHYAHKYYLNETEWFF 154
Query: 186 MGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAIS-YALA 244
DDDT +DNL +LS Y ++ Y G + +++ G GG G+ +S AL
Sbjct: 155 KADDDTYVIMDNLRWMLSNYTADQPIYFGKRFKPYIKQ-----GYMSGGAGYVLSREALI 209
Query: 245 KALEKIQDE-CLHRNPSLYGSDERIFACMMELGV 277
+ +E + C H + D I CM +GV
Sbjct: 210 RFVEGFRTGVCKHTTST---EDVAIGNCMQLMGV 240
>sp|Q08BL3|C1GTA_DANRE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A
OS=Danio rerio GN=c1galt1a PE=2 SV=1
Length = 408
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 26/146 (17%)
Query: 173 SFRLGLK----DVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYY 228
+F LK + WF+ DDDT +DNL +LS Y + Y G + + +
Sbjct: 155 AFHYALKNHGHEADWFLKADDDTFVVVDNLRWILSNYTPEQPIYFGKRFKPYTKQ----- 209
Query: 229 GMGFGGGGFAIS-YALAKALEKIQDE-CLHRNPSLYGSDERIFACMMELGVPLTKHPGFH 286
G GG G+ +S AL + +E + C H P D + C+ ++GV
Sbjct: 210 GYMSGGAGYVLSKEALRRFVEGFSTKVCTHTTPV---EDLAMGQCLEKMGV--------- 257
Query: 287 QLDIYGDLSGILMAHPVAPILSLHHL 312
+ GD L P + HHL
Sbjct: 258 ---LAGDSRDSLHRETFHPFIPEHHL 280
>sp|O12971|LFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Gallus
gallus GN=LFNG PE=2 SV=1
Length = 363
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 182 RWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYP------------SESHLQNLAFYYG 229
+WF DDD + L ++LS Y H + YIG P SE+ + + F++
Sbjct: 178 KWFCHVDDDNYVNVRTLVKLLSSYPHTQDIYIGKPSLDRPIQATERISENKMHPVHFWFA 237
Query: 230 MGFGGGGFAISYALA 244
GG GF IS LA
Sbjct: 238 T--GGAGFCISRGLA 250
>sp|Q9JJ06|C1GLT_MOUSE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Mus musculus GN=C1galt1 PE=1 SV=1
Length = 363
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 22/145 (15%)
Query: 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGF 237
L+D WF+ DDDT +DNL +LSKY+ + Y G + +++ G GG G+
Sbjct: 159 LEDADWFMKADDDTYVIVDNLRWLLSKYNPEQPIYFGRRFKPYVKQ-----GYMSGGAGY 213
Query: 238 AIS-YALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLSG 296
+S AL + + + E + S+ D + CM + V GD
Sbjct: 214 VLSKEALRRFVNAFKTEKCTHSSSI--EDLALGRCMEIINVEA------------GDSRD 259
Query: 297 ILMAHPVAPILSLHHLDLIEPVFPK 321
+ P + HH LI+ PK
Sbjct: 260 TIGKETFHPFVPEHH--LIKGYLPK 282
>sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Danio
rerio GN=lfng PE=2 SV=2
Length = 374
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 112 IRTWWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSGDTSKFQYKNPIGTRDAIRISRIVS 171
+ TW N+ + +++ D ++ + + ++ + S + + + A+ + +
Sbjct: 128 LDTWISRNMRQTYIFTDG--EDEELKKKIGSHAINTNCSAAHSRQALSCKMAVEYDKFI- 184
Query: 172 ESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPS------------ES 219
ES + +WF DDD L ++LS Y H + YIG PS ++
Sbjct: 185 ESGK------KWFCHVDDDNYVNTKTLVKLLSNYPHTQDMYIGKPSLDRPIEATERLGDN 238
Query: 220 HLQNLAFYYGMGFGGGGFAISYALAKALE--KIQDECLHRNPSLYGSDERIFACMME--L 275
++ + F++ GG GF IS LA + ++ + D+ ++E L
Sbjct: 239 KMRPVNFWFAT--GGAGFCISRGLALKMSPWASGGHFMNTAEKIRLPDDCTIGYIIESVL 296
Query: 276 GVPLTKHPGFH 286
GV LT+ FH
Sbjct: 297 GVSLTRSSLFH 307
>sp|Q2KJ92|LFNG_BOVIN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Bos
taurus GN=LFNG PE=2 SV=1
Length = 380
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 145 VSGDTSKFQYKNPIGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSK 204
V+ + S + + + A+ R + ES R +WF DDD + L R+L
Sbjct: 165 VNTNCSAAHSRQALSCKMAVEYDRFI-ESGR------KWFCHVDDDNYVNVRALLRLLGS 217
Query: 205 YDHNEYYYIGYP------------SESHLQNLAFYYGMGFGGGGFAISYALA 244
Y H + Y+G P SE+ ++ + F++ GG GF IS LA
Sbjct: 218 YPHTQDVYLGKPSLDRPIQATERVSENKVRPVHFWFAT--GGAGFCISRGLA 267
>sp|Q5F3G7|C1GLT_CHICK Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Gallus gallus GN=C1GALT1 PE=2 SV=1
Length = 366
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 60/146 (41%), Gaps = 24/146 (16%)
Query: 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGF 237
D WF+ DDDT LDNL +LSKY + Y G + +++ G GG G+
Sbjct: 160 FDDADWFMKADDDTYVILDNLRWLLSKYSPEQPIYFGRRFKPYVKQ-----GYMSGGAGY 214
Query: 238 AIS-YALAKALEKIQ-DECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLS 295
+S AL + + + ++C H + D + CM + V Q D S
Sbjct: 215 VLSKEALKRFVTAFKTNKCSHSSSI---EDLALGKCMEIINV---------QAGDSRDTS 262
Query: 296 GILMAHPVAPILSLHHLDLIEPVFPK 321
G HP P HL LI PK
Sbjct: 263 GRETFHPFVP----EHL-LIRGYLPK 283
>sp|Q8K0J2|B3GN7_MOUSE UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
OS=Mus musculus GN=B3gnt7 PE=2 SV=2
Length = 397
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 77/222 (34%), Gaps = 43/222 (19%)
Query: 101 SSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSGDTSKFQYKNPIGT 160
S T RR IR W GH W + ++ L S + Y+ +
Sbjct: 138 SVITQHDRREVIRQTW------GHEWESAGLGRGAVRTLFLLGTASKQEERTHYQQLLAY 191
Query: 161 RDAIRISRI----VSESFRLGLKDV---RW---------FVM-GDDDTVFFLDNLARVLS 203
D + + + F L LK++ +W FV GDDD NL LS
Sbjct: 192 EDRLYADILQWDFLDSFFNLTLKEIHFLKWLDIYCPNVPFVFKGDDDVFVNPTNLLEFLS 251
Query: 204 KYDHNEYYYIG---------YPSESHLQNLAFYYGMG-----FGGGGFAISYALAKALEK 249
E ++G ++ A YG GGGGF +S +LA+ L
Sbjct: 252 DRQPQENLFVGDVLKHARPIRKKDNKYYIPAVMYGKATYPPYAGGGGFLMSGSLARQLHH 311
Query: 250 IQDECLHRNPSLYGSDERIFA-CMMELGVPLTKHPGFHQLDI 290
D L+ D+ C+ LGV T H GF I
Sbjct: 312 ACDTL-----ELFPIDDVFLGMCLEVLGVKPTGHEGFKTFGI 348
>sp|P79949|RFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Xenopus
laevis GN=rfng PE=2 SV=1
Length = 340
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 26/131 (19%)
Query: 126 WLDKPVKNSSIDHLLPPIKVSGDTSKFQYKNPIGTRDAIRISRIVSESFRLGLKDVRWFV 185
W D+ ++ + D + V+ + S + + + A+ + V L D +WF
Sbjct: 132 WEDQELRQKAGDQM-----VNTNCSAVHTRQALCCKMAVEYDKFV-------LSDKKWFC 179
Query: 186 MGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESH------------LQNLAFYYGMGFG 233
DDD L L +LS + H+ Y+G PS H +L F++ G
Sbjct: 180 HLDDDNYLNLHALLDLLSTFSHSTDVYVGRPSLDHPVETVDRMKGDGSGSLKFWFAT--G 237
Query: 234 GGGFAISYALA 244
G GF IS LA
Sbjct: 238 GAGFCISRGLA 248
>sp|Q9YHB3|RFNG_NOTVI Beta-1,3-N-acetylglucosaminyltransferase radical fringe
OS=Notophthalmus viridescens GN=RFNG PE=2 SV=1
Length = 396
Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 160 TRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSES 219
TR A+ ++ E + + +WF DDD L +L +L+ + H++ Y+G PS
Sbjct: 190 TRQAL-CCKMAVEYDKFIESERKWFCHVDDDNYVNLFSLRHLLASFSHSQDVYLGRPSLD 248
Query: 220 H------------LQNLAFYYGMGFGGGGFAISYALA 244
H ++ F++ GG GF IS LA
Sbjct: 249 HPIEAIERVKSDGSASVRFWFAT--GGAGFCISRGLA 283
>sp|Q7SYI5|C1GTB_DANRE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B
OS=Danio rerio GN=c1galt1b PE=2 SV=1
Length = 374
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAI 239
+ WF+ DDDT +DNL +L+++ + Y G + +++ G GG G+ +
Sbjct: 161 EADWFLKADDDTYVIVDNLRWILARHSPEDPVYFGRRFKPYVKQ-----GYMSGGAGYVL 215
Query: 240 S-YALAKALEKIQDECLHRNPSLYGSDERIFACMMELGV 277
S AL + +E + + S+ D + CM ++GV
Sbjct: 216 SKEALRRFVEGFRTKVCTHTTSV--EDLAMGQCMEKIGV 252
>sp|Q18515|C1GLT_CAEEL Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Caenorhabditis elegans GN=C38H2.2 PE=2 SV=2
Length = 389
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 19/137 (13%)
Query: 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGF 237
L D WF+ DDDT ++NL +L + +E + G + Q G GG G+
Sbjct: 176 LNDYDWFLKADDDTYVVMENLRFMLLAHSPDEPIHFGCKFKPFTQG-----GYHSGGAGY 230
Query: 238 AIS-YALAKALE-KIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLS 295
+S AL K +E + D+ L D + C+ ++GV GD
Sbjct: 231 VLSREALKKFIEVALPDKSLCSQNHGGAEDAEMGKCLEKVGVKA------------GDSR 278
Query: 296 GILMAHPVAPILSLHHL 312
H P + HHL
Sbjct: 279 DADGHHRFMPFVPEHHL 295
>sp|O12972|RFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Gallus
gallus GN=RFNG PE=2 SV=2
Length = 372
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 29/181 (16%)
Query: 80 PSSDDTEDKTSLKHVVFGIGASSSTWEHRRNYIRTWWRPNVTRGHV-----WLDKPVKNS 134
P ++ LK + + + + R + W RG W D+ ++
Sbjct: 92 PPGGSAKESLELKDIFIAVKTTRKYHKTRLELLFQTWISRA-RGQTFIFTDWEDRELRLK 150
Query: 135 SIDHLLPPIKVSGDTSKFQYKNPIGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFF 194
+ DH+ ++ + S + + + ++ + + +WF DDD
Sbjct: 151 AGDHM-----INTNCSAVHTRQALCCKMSVEYDKFLESG-------QKWFCHVDDDNYVN 198
Query: 195 LDNLARVLSKYDHNEYYYIGYPS-------ESHLQNLAFYYGMGF----GGGGFAISYAL 243
L R+LS + ++ Y+G PS H+Q+ + F GG GF IS L
Sbjct: 199 PRTLLRLLSAFSPSQDVYVGRPSLDHPIEAADHVQSDGSKTSVKFWFATGGAGFCISRGL 258
Query: 244 A 244
A
Sbjct: 259 A 259
>sp|Q24342|FNG_DROME Fringe glycosyltransferase OS=Drosophila melanogaster GN=fng PE=1
SV=1
Length = 412
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 182 RWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPS-----ESHLQ------NLAFYYGM 230
+WF DDD + L ++L +Y + +Y+G PS E HL N +
Sbjct: 230 KWFCHFDDDNYVNVPRLVKLLDEYSPSVDWYLGKPSISSPLEIHLDSKNTTTNKKITFWF 289
Query: 231 GFGGGGFAISYALAKALEKIQ--DECLHRNPSLYGSDERIFACMME--LGVPLTKHPGFH 286
GG GF +S AL + I + + + D+ ++E L VPLT FH
Sbjct: 290 ATGGAGFCLSRALTLKMLPIAGGGKFISIGDKIRFPDDVTMGFIIEHLLKVPLTVVDNFH 349
>sp|Q1RLK6|B3GN4_MOUSE UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
OS=Mus musculus GN=B3gnt4 PE=2 SV=2
Length = 350
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 41/169 (24%)
Query: 174 FRLGLKDV---RW---------FVM-GDDDTVFFLDNLARVLSKYDHNEYYYIG------ 214
F L LK++ RW F++ GDDD + N+ L +D + + +G
Sbjct: 165 FNLTLKELHVQRWIAAACTQAHFILKGDDDVFIHVPNVLEFLEGWDPAQDFLVGDVIRLA 224
Query: 215 YPSES----HLQNLAFYYGMGF----GGGGFAISYALAKALEKIQDECLHRNPSLYGSDE 266
P+ + + + Y + GGGG+ +S A + L +E L+ D+
Sbjct: 225 RPNRNTKVKYFIPFSMYRARHYPPYAGGGGYVMSQATVRHLHMAMEEA-----ELFPIDD 279
Query: 267 RIFA-CMMELGVPLTKHPGFHQLDIYGDLS--------GILMAHPVAPI 306
C+ +LGV H GF I L+ G+L+ H ++P+
Sbjct: 280 VFVGMCLRKLGVTPIHHAGFKTFGIQQPLNPRDPCLYKGLLLVHRLSPL 328
>sp|Q66H69|B3GN7_RAT UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
OS=Rattus norvegicus GN=B3gnt7 PE=2 SV=1
Length = 397
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 91/269 (33%), Gaps = 54/269 (20%)
Query: 57 NHEPVIR--IHRQHSRNKVLVPTHVPSSDDTEDKTSLKHVVFGIGASSSTWEHRRNYIRT 114
N EP R + QH R + P + +K + + + S T RR IR
Sbjct: 99 NLEPHFRQFLAYQHCR-------YFPMLLNHPEKCAGDVYLLVVVKSVITQHDRREVIRQ 151
Query: 115 WWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSGDTSKFQYKNPIGTRDAIRISRI----V 170
W GH W ++ L S + Y+ + D + + +
Sbjct: 152 TW------GHEWESAGPDRGAVRTLFLLGTASKQEERTHYQQLLAYEDRLYGDILQWDFL 205
Query: 171 SESFRLGLKDV---RWF----------VMGDDDTVFFLDNLARVLSKYDHNEYYYIG--- 214
F L LK++ +W GDDD NL LS E ++G
Sbjct: 206 DSFFNLTLKEIHFLKWLDIYCPNVPFIFKGDDDVFVNPTNLLEFLSDRQPQENLFVGDVL 265
Query: 215 ------------YPSESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRNPSLY 262
Y + + + A Y GGGGF +S +LA+ L D L+
Sbjct: 266 KHARPIRKKDNKYYIPAVMYSKATYPPYA-GGGGFLMSGSLARQLHHACDTL-----ELF 319
Query: 263 GSDERIFA-CMMELGVPLTKHPGFHQLDI 290
D+ C+ LGV T H GF I
Sbjct: 320 PIDDVFLGMCLEVLGVKPTGHEGFKTFGI 348
>sp|Q9R1U9|RFNG_RAT Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Rattus
norvegicus GN=Rfng PE=2 SV=1
Length = 334
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 182 RWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESH-------------LQNLAFYY 228
+WF DDD +L +LS + N+ Y+G PS H + F++
Sbjct: 143 KWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGGGTSNTVKFWF 202
Query: 229 GMGFGGGGFAISYALA 244
GG GF +S LA
Sbjct: 203 AT--GGAGFCLSRGLA 216
>sp|O09009|RFNG_MOUSE Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Mus
musculus GN=Rfng PE=2 SV=1
Length = 332
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 182 RWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESH-------------LQNLAFYY 228
+WF DDD +L +LS + N+ Y+G PS H + F++
Sbjct: 141 KWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGGGTSNTVKFWF 200
Query: 229 GMGFGGGGFAISYALA 244
GG GF +S LA
Sbjct: 201 AT--GGAGFCLSRGLA 214
>sp|Q06SF2|RPOC2_STIHE DNA-directed RNA polymerase subunit beta'' OS=Stigeoclonium
helveticum GN=rpoC2 PE=3 SV=1
Length = 2430
Score = 34.3 bits (77), Expect = 2.6, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 283 PGFHQLDIYGDLSGILMAHPVAPILSLHHLDLIEPVFPKMDRVKAVKRLMVPMKLDSAGL 342
P F Q + G S P I++ + ++ EP+ K+ ++ + P+ D+ L
Sbjct: 405 PSFPQASLAGKAS----CFPEPQIVAFRNQEISEPLAEKISKITNKVFIRSPLTCDTPRL 460
Query: 343 IQQSICYCKTRSWTVSVSWGYAVQIYR--GIIAAKEMSVPA-----RTF 384
+ Q +CY W S+S GY V I GIIAA+ + P RTF
Sbjct: 461 VCQ-LCY----GW--SLSEGYLVSIGEAVGIIAAQSIGEPGTQLTMRTF 502
>sp|Q9NY97|B3GN2_HUMAN UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
OS=Homo sapiens GN=B3GNT2 PE=1 SV=2
Length = 397
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 233 GGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDI 290
GGGGF S LA L I D+ +H P D C+ +LG+ KH GF DI
Sbjct: 305 GGGGFLYSGHLALRLYHITDQ-VHLYPI---DDVYTGMCLQKLGLVPEKHKGFRTFDI 358
>sp|Q924T4|LFNG_RAT Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Rattus
norvegicus GN=Lfng PE=2 SV=1
Length = 378
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 182 RWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYP------------SESHLQNLAFYYG 229
+WF DDD L L R+L+ Y H + YIG P SE ++ + F++
Sbjct: 193 KWFCHVDDDNYVNLRALLRLLASYPHTQDVYIGKPSLDRPIQATERISEHRVRPVHFWFA 252
Query: 230 MGFGGGGFAISYALA 244
GG GF IS LA
Sbjct: 253 T--GGAGFCISRGLA 265
>sp|Q7K237|C1GLT_DROME Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Drosophila melanogaster GN=C1GalTA PE=2 SV=1
Length = 388
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGF 237
+ D WF+ DDDT ++N+ +L Y Y G + +++ G GG G+
Sbjct: 171 INDADWFLKADDDTYTIVENMRYMLYPYSPETPVYFGCKFKPYVKQ-----GYMSGGAGY 225
Query: 238 AISYALAK--ALEKIQDECLHRNPSLYGSDERIFACMMELGV 277
+S + +E + + L ++ + D I C+ + V
Sbjct: 226 VLSREAVRRFVVEALPNPKLCKSDNSGAEDVEIGKCLQNVNV 267
>sp|O09010|LFNG_MOUSE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Mus
musculus GN=Lfng PE=1 SV=1
Length = 378
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 182 RWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYP------------SESHLQNLAFYYG 229
+WF DDD L L R+L+ Y H + YIG P SE ++ + F++
Sbjct: 193 KWFCHVDDDNYVNLRALLRLLASYPHTQDVYIGKPSLDRPIQATERISEHKVRPVHFWFA 252
Query: 230 MGFGGGGFAISYALA 244
GG GF IS LA
Sbjct: 253 T--GGAGFCISRGLA 265
>sp|Q8NES3|LFNG_HUMAN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Homo
sapiens GN=LFNG PE=1 SV=2
Length = 379
Score = 32.3 bits (72), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 182 RWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYP------------SESHLQNLAFYYG 229
+WF DDD L L R+L+ Y H Y+G P SE+ ++ + F++
Sbjct: 194 KWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFA 253
Query: 230 MGFGGGGFAISYALAKALEKIQDECLHRNPS--LYGSDERIFACMME--LGVPLTKHPGF 285
GG GF IS LA + N + + D+ ++E LGVPL + F
Sbjct: 254 T--GGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEALLGVPLIRSGLF 311
Query: 286 H 286
H
Sbjct: 312 H 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,848,673
Number of Sequences: 539616
Number of extensions: 8761838
Number of successful extensions: 17046
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 17014
Number of HSP's gapped (non-prelim): 47
length of query: 501
length of database: 191,569,459
effective HSP length: 122
effective length of query: 379
effective length of database: 125,736,307
effective search space: 47654060353
effective search space used: 47654060353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)