Query 010780
Match_columns 501
No_of_seqs 337 out of 997
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03153 hypothetical protein; 100.0 3E-114 6E-119 910.6 41.0 471 26-500 30-532 (537)
2 PF04646 DUF604: Protein of un 100.0 1.2E-80 2.6E-85 606.7 21.7 254 222-475 1-255 (255)
3 KOG2246 Galactosyltransferases 100.0 5.1E-47 1.1E-51 393.7 14.2 293 82-388 62-363 (364)
4 PF02434 Fringe: Fringe-like; 100.0 6.1E-33 1.3E-37 276.3 10.8 210 88-314 2-233 (252)
5 KOG2287 Galactosyltransferases 99.4 5.4E-12 1.2E-16 131.7 15.4 207 91-318 94-331 (349)
6 KOG3708 Uncharacterized conser 99.4 6.6E-13 1.4E-17 140.2 8.0 202 88-314 22-232 (681)
7 PLN03193 beta-1,3-galactosyltr 99.2 2.7E-10 5.9E-15 119.8 15.5 121 162-288 220-356 (408)
8 PLN03133 beta-1,3-galactosyltr 99.2 4.6E-10 1E-14 124.2 17.1 203 91-317 384-617 (636)
9 PF01762 Galactosyl_T: Galacto 99.1 5.7E-10 1.2E-14 106.6 13.7 116 162-283 63-195 (195)
10 PTZ00210 UDP-GlcNAc-dependent 98.8 1.8E-07 3.9E-12 97.6 16.0 146 162-315 182-346 (382)
11 KOG2288 Galactosyltransferases 98.3 3.9E-06 8.5E-11 83.4 10.9 182 92-287 11-225 (274)
12 PF05679 CHGN: Chondroitin N-a 94.2 0.043 9.3E-07 60.5 3.9 65 250-315 1-70 (499)
13 cd04186 GT_2_like_c Subfamily 93.3 0.23 4.9E-06 44.0 6.3 84 180-283 74-158 (166)
14 TIGR03469 HonB hopene-associat 91.2 12 0.00025 39.7 17.1 98 178-280 131-252 (384)
15 cd02520 Glucosylceramide_synth 90.9 0.54 1.2E-05 44.2 6.1 87 179-284 85-171 (196)
16 PF13506 Glyco_transf_21: Glyc 90.5 1.9 4.1E-05 40.8 9.5 99 179-283 30-147 (175)
17 PF13641 Glyco_tranf_2_3: Glyc 90.5 0.96 2.1E-05 43.0 7.6 106 169-283 77-203 (228)
18 cd02526 GT2_RfbF_like RfbF is 88.8 1.6 3.4E-05 41.7 7.6 99 180-283 75-197 (237)
19 PF01755 Glyco_transf_25: Glyc 86.3 2.3 5E-05 40.3 7.1 22 230-251 168-189 (200)
20 cd04185 GT_2_like_b Subfamily 85.3 2.1 4.5E-05 39.9 6.1 85 179-279 78-163 (202)
21 TIGR01556 rhamnosyltran L-rham 82.8 3.1 6.6E-05 41.5 6.4 100 179-283 72-194 (281)
22 cd04192 GT_2_like_e Subfamily 82.3 4.7 0.0001 37.8 7.2 94 179-277 81-195 (229)
23 cd06420 GT2_Chondriotin_Pol_N 81.3 4.2 9.2E-05 36.9 6.3 93 179-280 78-170 (182)
24 cd06532 Glyco_transf_25 Glycos 81.2 2.9 6.4E-05 37.3 5.1 45 168-251 73-117 (128)
25 cd06434 GT2_HAS Hyaluronan syn 81.2 5.7 0.00012 37.7 7.4 27 180-206 77-103 (235)
26 cd06421 CESA_CelA_like CESA_Ce 80.4 2.5 5.5E-05 40.0 4.7 93 180-279 84-200 (234)
27 PF13632 Glyco_trans_2_3: Glyc 80.2 3.6 7.8E-05 38.2 5.6 95 183-283 1-117 (193)
28 cd06436 GlcNAc-1-P_transferase 80.1 3.1 6.6E-05 39.1 5.1 68 180-247 89-178 (191)
29 cd06438 EpsO_like EpsO protein 79.8 2.5 5.4E-05 39.1 4.3 39 178-216 79-117 (183)
30 cd04188 DPG_synthase DPG_synth 76.2 14 0.00031 34.7 8.4 99 181-285 83-203 (211)
31 cd06437 CESA_CaSu_A2 Cellulose 76.0 4.6 0.0001 38.7 5.1 96 179-281 86-204 (232)
32 cd06435 CESA_NdvC_like NdvC_li 75.6 11 0.00024 35.9 7.6 103 172-281 76-200 (236)
33 cd06427 CESA_like_2 CESA_like_ 75.4 4.5 9.6E-05 39.2 4.8 96 180-282 84-204 (241)
34 PRK11204 N-glycosyltransferase 73.3 5.1 0.00011 42.4 5.1 99 179-284 133-254 (420)
35 TIGR03472 HpnI hopanoid biosyn 73.0 11 0.00024 39.7 7.4 100 179-284 125-247 (373)
36 cd04195 GT2_AmsE_like GT2_AmsE 72.8 5.1 0.00011 37.1 4.4 96 179-281 79-192 (201)
37 cd04184 GT2_RfbC_Mx_like Myxoc 72.5 9.4 0.0002 35.2 6.1 98 180-283 83-194 (202)
38 cd02525 Succinoglycan_BP_ExoA 69.5 16 0.00035 34.7 7.1 95 180-280 81-198 (249)
39 cd06433 GT_2_WfgS_like WfgS an 69.4 14 0.0003 33.5 6.4 94 180-279 75-183 (202)
40 PLN02726 dolichyl-phosphate be 69.1 19 0.00041 35.0 7.6 99 180-284 93-212 (243)
41 cd04196 GT_2_like_d Subfamily 68.4 19 0.00041 33.2 7.2 93 178-276 77-190 (214)
42 PRK14583 hmsR N-glycosyltransf 68.1 7.2 0.00016 42.1 4.8 99 179-284 154-275 (444)
43 cd02522 GT_2_like_a GT_2_like_ 67.6 13 0.00028 34.8 6.0 91 181-279 73-176 (221)
44 cd06439 CESA_like_1 CESA_like_ 67.5 13 0.00028 35.8 6.1 29 181-209 110-138 (251)
45 cd06442 DPM1_like DPM1_like re 66.5 21 0.00045 33.5 7.2 36 181-216 79-115 (224)
46 cd04187 DPM1_like_bac Bacteria 62.9 18 0.00039 32.9 5.8 69 181-249 81-164 (181)
47 cd00761 Glyco_tranf_GTA_type G 60.2 23 0.0005 29.7 5.7 72 180-273 77-148 (156)
48 cd04179 DPM_DPG-synthase_like 58.8 20 0.00043 32.4 5.3 36 182-217 81-117 (185)
49 cd06913 beta3GnTL1_like Beta 1 58.1 20 0.00043 33.9 5.4 38 179-216 83-120 (219)
50 KOG2246 Galactosyltransferases 58.0 13 0.00028 39.7 4.4 64 82-148 81-144 (364)
51 PLN03181 glycosyltransferase; 57.4 3E+02 0.0065 30.3 15.2 45 162-207 181-225 (453)
52 PTZ00260 dolichyl-phosphate be 57.2 41 0.0009 35.0 8.0 99 180-284 162-286 (333)
53 COG1215 Glycosyltransferases, 50.7 24 0.00053 37.0 5.1 99 179-284 136-259 (439)
54 cd04191 Glucan_BSP_ModH Glucan 49.7 34 0.00075 34.3 5.7 105 178-284 93-225 (254)
55 PRK14716 bacteriophage N4 adso 48.3 43 0.00094 37.3 6.7 101 179-282 157-281 (504)
56 COG1216 Predicted glycosyltran 48.2 47 0.001 33.8 6.5 97 183-284 87-214 (305)
57 cd02510 pp-GalNAc-T pp-GalNAc- 48.2 32 0.00068 34.6 5.3 26 180-205 83-108 (299)
58 PF00535 Glycos_transf_2: Glyc 48.1 20 0.00044 31.0 3.4 36 181-216 79-115 (169)
59 PRK10714 undecaprenyl phosphat 45.0 40 0.00087 35.0 5.5 70 180-249 90-174 (325)
60 PF02485 Branch: Core-2/I-Bran 44.4 1.4E+02 0.003 29.1 9.0 151 94-249 1-172 (244)
61 PRK11234 nfrB bacteriophage N4 33.4 1.8E+02 0.004 34.0 9.0 102 180-283 155-279 (727)
62 PF05637 Glyco_transf_34: gala 31.4 58 0.0013 32.5 4.0 32 163-195 60-91 (239)
63 TIGR03030 CelA cellulose synth 29.4 91 0.002 36.1 5.7 101 171-280 221-348 (713)
64 cd02515 Glyco_transf_6 Glycosy 29.2 3.1E+02 0.0067 28.3 8.7 119 88-216 33-160 (271)
65 cd06423 CESA_like CESA_like is 28.2 73 0.0016 27.3 3.7 26 180-205 78-103 (180)
66 COG3306 Glycosyltransferase in 23.1 1.7E+02 0.0036 29.8 5.6 32 233-268 156-187 (255)
67 PF13704 Glyco_tranf_2_4: Glyc 20.3 1.3E+02 0.0028 24.7 3.6 25 178-202 69-97 (97)
No 1
>PLN03153 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-114 Score=910.62 Aligned_cols=471 Identities=39% Similarity=0.710 Sum_probs=423.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccC----------------CCCC--CCCccc---cccc------ccccccccCCCC
Q 010780 26 SLPKTMICFIVLVSLPYVFYSLILLYS----------------SDTP--NHEPVI---RIHR------QHSRNKVLVPTH 78 (501)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~c--~~~~~~---~~~~------~~~~~~~~~~~~ 78 (501)
.++++++++|+.+.++|++|++..+.. .+.| +.+... .+.. +|+.... +...
T Consensus 30 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 108 (537)
T PLN03153 30 AVVAVAALLLSTTAWLSLVFSGTTARCWHRFKDWEGSPDTLLWNKRYHHPIVTPLPPPPSSPSLPSSLLLDHFRN-RSLS 108 (537)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccCccccCcccccccccccccccccccccccccc-cccC
Confidence 588999999999999999999766543 3345 222111 0000 1111010 0111
Q ss_pred CCCCCCCCCCCccceEEEEEecCCchhHhhHHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCeeecCCCCcccccCCC
Q 010780 79 VPSSDDTEDKTSLKHVVFGIGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSGDTSKFQYKNPI 158 (501)
Q Consensus 79 ~~~~~~~~~~~~l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~~~rg~vfld~~~~~~~~~~~LP~v~is~dts~f~y~~~~ 158 (501)
..++.....+|+++||||||+|++++|++|++|||.||+++.|||+||+|+.+.+..++..+|+++|+.|+|+|.|+++.
T Consensus 109 ~~~~~~~~~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~~~~~~~P~i~is~d~s~f~y~~~~ 188 (537)
T PLN03153 109 EIERLKVEAELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPEEGDDSLPPIMVSEDTSRFRYTNPT 188 (537)
T ss_pred CCCCcccCCCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCCCCcCCCCCEEeCCCcccccccCCC
Confidence 12334555779999999999999999999999999999999999999999877654478889999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccccccccccccccccce
Q 010780 159 GTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFA 238 (501)
Q Consensus 159 g~~~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~GGaGiv 238 (501)
|++.++++++|+.|+++.+.+++|||||+||||||+++||+++|++||+++++|||..+|...++..|++.||||||||+
T Consensus 189 Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~ 268 (537)
T PLN03153 189 GHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIA 268 (537)
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888999999999
Q ss_pred ecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCCCcccccCCCcccccccCCCCceeeeccCCCCCCc
Q 010780 239 ISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLSGILMAHPVAPILSLHHLDLIEPV 318 (501)
Q Consensus 239 LSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~gfhq~d~~gd~~g~~~s~~~~PlvSlHHl~~~~p~ 318 (501)
||++||++|.++++.|.++|...+++|.+||+||+++||+||+++||||+|++||++|++++||++|+|||||++.++|+
T Consensus 269 LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSlHH~~~~~p~ 348 (537)
T PLN03153 269 ISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSIHHVEAVDPF 348 (537)
T ss_pred EcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceeeeeccccccc
Confidence 99999999999999999988878999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHhhhhccccCccceeEEEEEeecCcceEEEeecceEEEEEcCCCCccccccccccccccccCCCCcCccc
Q 010780 319 FPKMDRVKAVKRLMVPMKLDSAGLIQQSICYCKTRSWTVSVSWGYAVQIYRGIIAAKEMSVPARTFIDWNFGDEDVYFSF 398 (501)
Q Consensus 319 fp~~~~~~al~~l~~a~~~d~~~~lq~~ic~D~~~~w~~~vs~Gysv~~y~~~~~~~~l~~~~~Tf~~w~~~~~~~~~~f 398 (501)
||+|++.+||+++..|+++|++++|||+||||..++|+|+||||||||+|++++.++||++||+||.+|++..+.++|+|
T Consensus 349 fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fsvSwGysV~~y~~~~~~~dl~~~e~Tf~~w~~~~~~~~f~f 428 (537)
T PLN03153 349 YPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFSISLGYVVQVFPSIVLPRDLERSELTYSAWNKISHRNEFDL 428 (537)
T ss_pred cCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEEEeccEEEEEecCCCCchhhhhhHhhhhhhcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cCCCCCCCCCCCCeEEEeeceeeecCCCceEEEEEEecccC-----CCCCCCCCCCCCceEEEEeecCCCCCCCCCcccc
Q 010780 399 NTRPVSTNPCQKPFVYYLSNALFNLNLNRTASEYIRHQESN-----SDCDWKIADPSRIKRIEVYKKPDPHLWDKPPRRN 473 (501)
Q Consensus 399 ~trp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~r~~~~~-----~~c~~~~~~~~~~~~i~v~~~~~~~~w~~~prr~ 473 (501)
||||+.+++|+||++|||++|.. +++++++.|+|+++++ +.|.+.+.++.+|++|+|+++|++++|++|||||
T Consensus 429 ntr~~~r~~c~~p~~f~l~~~~~--~~~~~~~~Y~r~~~~~~~~~~~~C~~~~~~~~~v~~i~V~~~~~~~~w~~aprr~ 506 (537)
T PLN03153 429 DTRDPIKSVCKKPILFFLKDVGR--EGNATLGTYSRARMKDDLKRKVFCFPRSLPLPYVEKIQVLGFPLSKNWHLVPRRL 506 (537)
T ss_pred cCCCCCCCcccCceEEEeeeccc--cCCeeEEEEEEecccccccccccccccCCChhhceEEEEecCCCccchhhcchhh
Confidence 99999999999999999999964 4678999999997543 6788887655899999999999999999999999
Q ss_pred cccccCCCCCceEEEEEeeecCCcccc
Q 010780 474 CCRILPTKKKGTMVVDVGVCREGEIAG 500 (501)
Q Consensus 474 cc~~~~~~~~~~~~~~i~~c~~~e~~~ 500 (501)
||+|++++ +++|+|+||.|++||+++
T Consensus 507 CC~v~~~~-~~~~~i~v~~C~~~e~~~ 532 (537)
T PLN03153 507 CCRLNQTS-DELLTLTVGQCEKGSLGS 532 (537)
T ss_pred heeccCCC-CCcEEEEEEeccCCcccc
Confidence 99999886 889999999999999975
No 2
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=100.00 E-value=1.2e-80 Score=606.72 Aligned_cols=254 Identities=56% Similarity=1.109 Sum_probs=248.5
Q ss_pred cccccccccccccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCCCcccccCCCcccccccC
Q 010780 222 QNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLSGILMAH 301 (501)
Q Consensus 222 ~~~~f~y~~a~GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~gfhq~d~~gd~~g~~~s~ 301 (501)
||+.|+|+||||||||+||++|+++|++++|.|+++|+..+++|.+|..||+++||+||.++||||+|++||++|++++|
T Consensus 1 Qn~~fs~~MAfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~Di~Gd~~G~~~a~ 80 (255)
T PF04646_consen 1 QNVMFSYNMAFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQMDIRGDPSGFLEAH 80 (255)
T ss_pred CCceeeccccccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeEeeccCcceeeecC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCCCCCcCCCccHHHHHHhhhhccccCccceeEEEEEeecCcceEEEeecceEEEEEcCCCCcccccccc
Q 010780 302 PVAPILSLHHLDLIEPVFPKMDRVKAVKRLMVPMKLDSAGLIQQSICYCKTRSWTVSVSWGYAVQIYRGIIAAKEMSVPA 381 (501)
Q Consensus 302 ~~~PlvSlHHl~~~~p~fp~~~~~~al~~l~~a~~~d~~~~lq~~ic~D~~~~w~~~vs~Gysv~~y~~~~~~~~l~~~~ 381 (501)
+..|++|+||++.++|+||+|++++||+||++|+++|++++|||+||||+.++|+|||||||+||+|+++++|+|||+++
T Consensus 81 ~~~pl~SlHH~~~~~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~~~l~~~dLe~~~ 160 (255)
T PF04646_consen 81 PLAPLVSLHHWDSVDPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYRGILTPRDLETPE 160 (255)
T ss_pred CCCceeeeeehhhccccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEECCCCChHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcCccccCCCCCCCCCCCCeEEEeeceeeecCCCceEEEEEEecccCCCCCCCCCCC-CCceEEEEeec
Q 010780 382 RTFIDWNFGDEDVYFSFNTRPVSTNPCQKPFVYYLSNALFNLNLNRTASEYIRHQESNSDCDWKIADP-SRIKRIEVYKK 460 (501)
Q Consensus 382 ~Tf~~w~~~~~~~~~~f~trp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~r~~~~~~~c~~~~~~~-~~~~~i~v~~~ 460 (501)
+||.+|++.+++++|+|||||+++++|+||++|||++|+.+.++++++++|+|+..++++|.|.+.+| .+|++|+|+++
T Consensus 161 rTF~~W~~~~~~~~f~FnTRp~~~dpC~rP~vffL~~v~~~~~~~~t~s~Y~r~~~~~~~C~~~~~~p~~~v~~I~V~~k 240 (255)
T PF04646_consen 161 RTFRTWYRRSDRTPFAFNTRPVPRDPCQRPTVFFLSSVRSDSGSNQTVSSYVRHRVRNPNCCWPMADPLSKVQRIRVLKK 240 (255)
T ss_pred HHhhcccCcCcCCceeccCCCCcCCCCCCCeEEEEeeeeecCCCCeEEEEEEecccCCCCCCCCCCCchhhceEEEEEcc
Confidence 99999999999999999999999999999999999999987678999999999998889999999887 99999999999
Q ss_pred CCCCCCCCCcccccc
Q 010780 461 PDPHLWDKPPRRNCC 475 (501)
Q Consensus 461 ~~~~~w~~~prr~cc 475 (501)
|++++|++|||||||
T Consensus 241 ~~~~~w~~aPRR~CC 255 (255)
T PF04646_consen 241 PDPDLWKKAPRRQCC 255 (255)
T ss_pred cCCcccccCccccCC
Confidence 999999999999999
No 3
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-47 Score=393.73 Aligned_cols=293 Identities=38% Similarity=0.579 Sum_probs=257.5
Q ss_pred CCCCCCCCccceEEEE-EecCCchhHhhHHHHHhhhcCCCccEEEEecCCCCC----CCCCCCCCCeeecCCCCccc---
Q 010780 82 SDDTEDKTSLKHVVFG-IGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKN----SSIDHLLPPIKVSGDTSKFQ--- 153 (501)
Q Consensus 82 ~~~~~~~~~l~~IvFg-I~TS~k~~~~R~~~ik~Ww~~~~~rg~vfld~~~~~----~~~~~~LP~v~is~dts~f~--- 153 (501)
.......+++.+++|| |+++...|..|..+|.-||.++.+++.+|++..... -+....+|++ ++.++++|.
T Consensus 62 ~~~~~~~~~i~~~~~g~~~~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~-~s~~~~~f~~v~ 140 (364)
T KOG2246|consen 62 SENLSLTTDILHLVFGIIASSIALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPT-LSKDDSRFPTVY 140 (364)
T ss_pred ccccccccchhhhccCCccccchhccCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCcc-CCCCCCcCceee
Confidence 3445577899999999 999999999999999999999999999999863321 1123456778 899999998
Q ss_pred ccCCCCCcchhhHHHHHHHHHH-cCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCccccccccccccc
Q 010780 154 YKNPIGTRDAIRISRIVSESFR-LGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGF 232 (501)
Q Consensus 154 y~~~~g~~~~~r~~~mv~e~~~-~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~ 232 (501)
|+.+.|.++.|+..+++-+.+. ++.+++|||+++||||||+++||+++|++|||++|+|||..++.+.++. +++++|+
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~~~~~-y~~g~ag 219 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSYFQNG-YSSGGAG 219 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccccccc-cccCCCC
Confidence 8888898889988888766654 8899999999999999999999999999999999999999999988886 5555566
Q ss_pred ccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCCCcccccCCCcccccccCCCCceeeeccC
Q 010780 233 GGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQLDIYGDLSGILMAHPVAPILSLHHL 312 (501)
Q Consensus 233 GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~gfhq~d~~gd~~g~~~s~~~~PlvSlHHl 312 (501)
||+|+++++++++++.+..+.|++++.+ +++|.+||+||+++||+++++ ||.|.+|.+.|+..+|++.|++++||+
T Consensus 220 ~~ls~aa~~~la~~l~~~~~~C~~~~~~-~~eD~~i~~Cl~~~GV~~~d~---~d~dg~~rf~~~~p~~~~~p~~s~~~~ 295 (364)
T KOG2246|consen 220 YVLSFAALRRLAERLLNNEDKCPQRYPS-YGEDRRIGRCLAEVGVPATDE---RDEDGRGRFLPLLPAHPIAPLVSLHHL 295 (364)
T ss_pred cceeHHHHHHHHHHHhcchhhcccccCC-chhHHHHHHHHHHhCCCccCc---hhhhcccccCCCChhhccCCccccccc
Confidence 6666666666666666677889998876 789999999999999999999 999999999999999999999999999
Q ss_pred CCCCCcCCCccHHHHHHhhhhccccCccceeEEEEEeecCcceEEEeecceEEEEEcCCCCccccccccccccccc
Q 010780 313 DLIEPVFPKMDRVKAVKRLMVPMKLDSAGLIQQSICYCKTRSWTVSVSWGYAVQIYRGIIAAKEMSVPARTFIDWN 388 (501)
Q Consensus 313 ~~~~p~fp~~~~~~al~~l~~a~~~d~~~~lq~~ic~D~~~~w~~~vs~Gysv~~y~~~~~~~~l~~~~~Tf~~w~ 388 (501)
.-+ +||++++..+++++..+...+++ .+|+.+|||..+.|+++++|||.+++++.... ++++||.+|+
T Consensus 296 ~~~--~fp~~~~~~~~s~~~vsfh~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~~~~ 363 (364)
T KOG2246|consen 296 WLV--YFPNQNGSGCCSDLAVSFHYLSP-IEMQSFCYDIYRLRTFGVSWGYTVQIIRPNLS-----RPSRTFSSWN 363 (364)
T ss_pred eee--ecCCCchhhHHHHhhHhhccCCH-HHHHHHhhhhhheeeccccccccccccccccc-----ccccccCCCC
Confidence 998 99999999999999999999999 99999999999999999999999999999887 7889999996
No 4
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.98 E-value=6.1e-33 Score=276.29 Aligned_cols=210 Identities=26% Similarity=0.405 Sum_probs=118.0
Q ss_pred CCccceEEEEEecCCchhHhhHHHHHhhhcCC-CccEEEEecCCCCCCCCCCCCCCe---e-ecCCCCcccccCCCCCc-
Q 010780 88 KTSLKHVVFGIGASSSTWEHRRNYIRTWWRPN-VTRGHVWLDKPVKNSSIDHLLPPI---K-VSGDTSKFQYKNPIGTR- 161 (501)
Q Consensus 88 ~~~l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~-~~rg~vfld~~~~~~~~~~~LP~v---~-is~dts~f~y~~~~g~~- 161 (501)
++++++|+|+|+|++++|++|+.+|+.+|.+. ....++|.|.. +..+|.. . +..+++ .++.
T Consensus 2 ~~~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~------d~~l~~~~~~~l~~~~~~-------~~~~~ 68 (252)
T PF02434_consen 2 PVTLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAE------DPSLPTVTGVHLVNPNCD-------AGHCR 68 (252)
T ss_dssp ---GGGEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--------HHHHHHHGGGEEE----------------
T ss_pred CcccccEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCcc------ccccccccccccccCCCc-------chhhH
Confidence 57899999999999999999999997777765 33456677754 2335544 1 222221 2332
Q ss_pred chhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCccccc----------ccccccc
Q 010780 162 DAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNL----------AFYYGMG 231 (501)
Q Consensus 162 ~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~----------~f~y~~a 231 (501)
.+..+...+.+. .+..++++||+++||||||+++||+++|++||+++|+|||.++....... .-++.||
T Consensus 69 ~~~~~~~~~~y~-~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~ 147 (252)
T PF02434_consen 69 KTLSCKMAYEYD-HFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFA 147 (252)
T ss_dssp ----HHHHHHHH-HHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------EE
T ss_pred HHHHHHHHHHHH-hhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceEee
Confidence 222222222221 22357889999999999999999999999999999999999976543222 1134689
Q ss_pred cccccceecHHHHHHHHHHHHHh--hhcCC-CCCCchHHHHHHHHh-cCCCeeecCCCcccccC-CCcc-cccccCCCCc
Q 010780 232 FGGGGFAISYALAKALEKIQDEC--LHRNP-SLYGSDERIFACMME-LGVPLTKHPGFHQLDIY-GDLS-GILMAHPVAP 305 (501)
Q Consensus 232 ~GGaGivLSr~ll~~L~~~~d~C--~~~~~-~~~~~D~~Lg~Ci~~-lGV~lt~~~gfhq~d~~-gd~~-g~~~s~~~~P 305 (501)
+|||||||||+||++|.+....| ..... ....+|..||.||+. +||++|+.+.|||.-.. .+.. ..+.. +.
T Consensus 148 ~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~---q~ 224 (252)
T PF02434_consen 148 TGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLENLQDYNPETLHR---QV 224 (252)
T ss_dssp -GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-GGG--TTTGGG----S
T ss_pred CCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcccccCCHHHhcc---CC
Confidence 99999999999999999877654 33222 134678889999998 99999999999997532 2333 23433 34
Q ss_pred eeeeccCCC
Q 010780 306 ILSLHHLDL 314 (501)
Q Consensus 306 lvSlHHl~~ 314 (501)
.||+|+...
T Consensus 225 ~~s~~~~~~ 233 (252)
T PF02434_consen 225 PISYHKFEN 233 (252)
T ss_dssp EEE-EEETT
T ss_pred CeecCCCcC
Confidence 589999963
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.39 E-value=5.4e-12 Score=131.71 Aligned_cols=207 Identities=21% Similarity=0.290 Sum_probs=137.2
Q ss_pred cceEEEEEecCCchhHhhHHHHHhhhcCCC-----ccEEEEecCCCCCC--C-----CCCCCCCeee-c-CCCCcccccC
Q 010780 91 LKHVVFGIGASSSTWEHRRNYIRTWWRPNV-----TRGHVWLDKPVKNS--S-----IDHLLPPIKV-S-GDTSKFQYKN 156 (501)
Q Consensus 91 l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~~-----~rg~vfld~~~~~~--~-----~~~~LP~v~i-s-~dts~f~y~~ 156 (501)
.-.|+.+|+|..+...+|...-++|..++. .+.++.+.....+. + +....-.+-+ + .|+ |.
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dt----y~- 168 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDT----YF- 168 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccc----hh-
Confidence 347999999999999888887777777652 34444455433210 0 0011111211 1 122 22
Q ss_pred CCCCcchhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcC-CCCCCceEEccCCCcccc-----------c
Q 010780 157 PIGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKY-DHNEYYYIGYPSESHLQN-----------L 224 (501)
Q Consensus 157 ~~g~~~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~y-D~~~p~YIG~~se~~~~~-----------~ 224 (501)
...+|.+.++.+.... +|+++.++++|||+||++++|+++|.+. ++++.+|.|......... .
T Consensus 169 ----nltlKtl~~l~w~~~~-cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~ 243 (349)
T KOG2287|consen 169 ----NLTLKTLAILLWGVSK-CPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES 243 (349)
T ss_pred ----chHHHHHHHHHHHHhc-CCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH
Confidence 1567777888888776 9999999999999999999999999999 999999999876542110 1
Q ss_pred ccc--ccccc-ccccceecHHHHHHHHHHHHHhhhcCCCCCC-chHHHHHHHHhc-CCCeeecCCCcccccCCCcccccc
Q 010780 225 AFY--YGMGF-GGGGFAISYALAKALEKIQDECLHRNPSLYG-SDERIFACMMEL-GVPLTKHPGFHQLDIYGDLSGILM 299 (501)
Q Consensus 225 ~f~--y~~a~-GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~-~D~~Lg~Ci~~l-GV~lt~~~gfhq~d~~gd~~g~~~ 299 (501)
.+. ...+| +|+||+||+.++++|..... . ...+. +|.-+|.||++. |+.....+++..... .+..
T Consensus 244 ~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~---~--~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~~-----~~~~ 313 (349)
T KOG2287|consen 244 EYPCSVYPPYASGPGYVISGDAARRLLKASK---H--LKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIPL-----SFDP 313 (349)
T ss_pred HCCCCCCCCcCCCceeEecHHHHHHHHHHhc---C--CCccchHHHHHHHHHHHhcCCCcccCcccccccc-----cCCC
Confidence 111 01233 89999999999999998421 1 12344 566699999985 998888777443321 1122
Q ss_pred cCCCCceeeeccCCCCCCc
Q 010780 300 AHPVAPILSLHHLDLIEPV 318 (501)
Q Consensus 300 s~~~~PlvSlHHl~~~~p~ 318 (501)
+. ..-+++.|..++.+++
T Consensus 314 ~~-~~~~~~~H~~~p~e~~ 331 (349)
T KOG2287|consen 314 CC-YRDLLAVHRLSPNEMI 331 (349)
T ss_pred Cc-ccceEEEecCCHHHHH
Confidence 22 2458999999876543
No 6
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=6.6e-13 Score=140.20 Aligned_cols=202 Identities=21% Similarity=0.244 Sum_probs=138.6
Q ss_pred CCccceEEEEEecCCchhHhhHHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCeeecCCCCcccccCCCCCcchhhHH
Q 010780 88 KTSLKHVVFGIGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSGDTSKFQYKNPIGTRDAIRIS 167 (501)
Q Consensus 88 ~~~l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~~~rg~vfld~~~~~~~~~~~LP~v~is~dts~f~y~~~~g~~~~~r~~ 167 (501)
-.....+++||+|.. +=+-.|+.+-+....|..+|.++... +..+....+. |. | ..+ .+++.+
T Consensus 22 LG~RErl~~aVmte~----tlA~a~NrT~ahhvprv~~F~~~~~i----~~~~a~~~~v---s~--~-d~r---~~~~~s 84 (681)
T KOG3708|consen 22 LGTRERLMAAVMTES----TLALAINRTLAHHVPRVHLFADSSRI----DNDLAQLTNV---SP--Y-DLR---GQKTHS 84 (681)
T ss_pred hhhHHHHHHHHHHHH----HHHHHHHHHHHhhcceeEEeeccccc----cccHhhcccc---Cc--c-ccC---ccccHH
Confidence 346678899999922 34556888887777788898886421 2223323221 11 1 012 344556
Q ss_pred HHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccccccccccccccccceecHHHHHHH
Q 010780 168 RIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKAL 247 (501)
Q Consensus 168 ~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~GGaGivLSr~ll~~L 247 (501)
..+.+++.++..++|||+++-|||||+...|++++-+.+.++++|+|...+... .-|.+|.||.||++++.+|
T Consensus 85 ~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~gs-------~rC~l~~G~LLS~s~l~~l 157 (681)
T KOG3708|consen 85 MVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAEDGS-------GRCRLDTGMLLSQSLLHAL 157 (681)
T ss_pred HHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhCcc-------CccccccceeecHHHHHHH
Confidence 678888888899999999999999999999999999999999999997655322 1389999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchHHHHHHHHh-cCCCeeecC-CCcccccCCCccc----c--cccCC-CCceeeeccCCC
Q 010780 248 EKIQDECLHRNPSLYGSDERIFACMME-LGVPLTKHP-GFHQLDIYGDLSG----I--LMAHP-VAPILSLHHLDL 314 (501)
Q Consensus 248 ~~~~d~C~~~~~~~~~~D~~Lg~Ci~~-lGV~lt~~~-gfhq~d~~gd~~g----~--~~s~~-~~PlvSlHHl~~ 314 (501)
.++++.|..... .--.|..||+||.. +||.|+... |..|+--..+..| + .+..+ ++..+++|.+.+
T Consensus 158 rnnle~C~~~~l-sad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~aFr~A~tv~pv~~ 232 (681)
T KOG3708|consen 158 RNNLEGCRNDIL-SADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPAFRSALTVHPVLS 232 (681)
T ss_pred HhhHHHhhcccc-cCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChHHhhhhccCccCC
Confidence 999999976432 12346669999996 799987542 3333321122222 1 11111 455678887755
No 7
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.20 E-value=2.7e-10 Score=119.78 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=88.0
Q ss_pred chhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCccc---c--------cccc---
Q 010780 162 DAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQ---N--------LAFY--- 227 (501)
Q Consensus 162 ~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~---~--------~~f~--- 227 (501)
...|.+.+++++.++ .++++|+++|||+||++++|+.+|.+......+|+|........ . ..|+
T Consensus 220 LT~KTl~~f~wA~~~--~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~ 297 (408)
T PLN03193 220 LSAKTKTYFATAVAM--WDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENG 297 (408)
T ss_pred chHHHHHHHHHHHHc--CCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCcc
Confidence 355666778887765 48999999999999999999999998776667999998432110 0 0111
Q ss_pred -ccccc-ccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCCCccc
Q 010780 228 -YGMGF-GGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQL 288 (501)
Q Consensus 228 -y~~a~-GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~gfhq~ 288 (501)
..+.| .|+|||||+.+++.|+..... +..| -.+|+-||.+|..++|.-.+.+.|+..
T Consensus 298 ~~YPpyAsG~gYVlS~DLa~~I~~n~~~-L~~y---~~EDV~vG~Wl~~L~V~~vdd~~fcc~ 356 (408)
T PLN03193 298 NKYFRHATGQLYAISKDLASYISINQHV-LHKY---ANEDVSLGSWFIGLDVEHIDDRRLCCG 356 (408)
T ss_pred ccCCCCCCcceEEehHHHHHHHHhChhh-hccc---CcchhhhhhHhccCCceeeecccccCC
Confidence 01223 789999999999999865432 2222 245666999998889998888888865
No 8
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.19 E-value=4.6e-10 Score=124.17 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=119.6
Q ss_pred cceEEEEEecCCchhHhhHHHHHhhhcCCC-----ccEEEEecCCCCCC-C-----CCCCCCCeee-c-CCCCcccccCC
Q 010780 91 LKHVVFGIGASSSTWEHRRNYIRTWWRPNV-----TRGHVWLDKPVKNS-S-----IDHLLPPIKV-S-GDTSKFQYKNP 157 (501)
Q Consensus 91 l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~~-----~rg~vfld~~~~~~-~-----~~~~LP~v~i-s-~dts~f~y~~~ 157 (501)
--.+|++|.|+++.+++|...-++|.+... .+..+++.....+. + +....-.+-+ . .|+ |.+
T Consensus 384 ~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~Ds----Y~N- 458 (636)
T PLN03133 384 PLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDY----YSL- 458 (636)
T ss_pred ceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeech----hhh-
Confidence 347999999999998887776666665321 22334444321110 0 0111112211 1 122 321
Q ss_pred CCCcchhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCccc----ccc-------c
Q 010780 158 IGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQ----NLA-------F 226 (501)
Q Consensus 158 ~g~~~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~----~~~-------f 226 (501)
..+|.+.++.++ .+++++++++++|||+||++++|+++|.+.+..+.+|+|.......+ ... |
T Consensus 459 ----LTlKtl~~~~wa--~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey 532 (636)
T PLN03133 459 ----ITWKTLAICIFG--TEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW 532 (636)
T ss_pred ----hHHHHHHHHHHH--HhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC
Confidence 345555555544 34889999999999999999999999998888888999987543211 111 1
Q ss_pred --cccccc-ccccceecHHHHHHHHHHHHHhhhcCCCCCC-chHHHHHHHHh---cCCCeeecCCCcccccCCCcccccc
Q 010780 227 --YYGMGF-GGGGFAISYALAKALEKIQDECLHRNPSLYG-SDERIFACMME---LGVPLTKHPGFHQLDIYGDLSGILM 299 (501)
Q Consensus 227 --~y~~a~-GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~-~D~~Lg~Ci~~---lGV~lt~~~gfhq~d~~gd~~g~~~ 299 (501)
.+.+.| +|+||+||+.+++.|........- ..+. +|+-+|.|+++ +|+++.+.. |.+-.. ..
T Consensus 533 p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l---~~f~lEDVyvGi~l~~l~k~gl~v~~~~-----~~r~~~---~~ 601 (636)
T PLN03133 533 PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRL---KMFKLEDVAMGIWIAEMKKEGLEVKYEN-----DGRIYN---EG 601 (636)
T ss_pred CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhccc---CcCChhhHhHHHHHHHhcccCCCceeeC-----CCcccC---Cc
Confidence 111233 899999999999999876432111 2333 46669999974 466654332 211011 11
Q ss_pred cCCCCceeeeccCCCCCC
Q 010780 300 AHPVAPILSLHHLDLIEP 317 (501)
Q Consensus 300 s~~~~PlvSlHHl~~~~p 317 (501)
| ..-.|+.|..++.++
T Consensus 602 C--~~~~i~~H~~sP~eM 617 (636)
T PLN03133 602 C--KDGYVVAHYQSPREM 617 (636)
T ss_pred C--CCCeEEEecCCHHHH
Confidence 2 123578887777543
No 9
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.15 E-value=5.7e-10 Score=106.63 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=87.6
Q ss_pred chhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcC--CCCCCceEEccCCCccc----ccc-------c--
Q 010780 162 DAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKY--DHNEYYYIGYPSESHLQ----NLA-------F-- 226 (501)
Q Consensus 162 ~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~y--D~~~p~YIG~~se~~~~----~~~-------f-- 226 (501)
...|.+.+++++.++ ++++++++++|||+||++++|..+|.+. +..+..+.|........ ... +
T Consensus 63 lt~K~~~~~~w~~~~-c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~ 141 (195)
T PF01762_consen 63 LTLKTLAGLKWASKH-CPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPD 141 (195)
T ss_pred hhHHHHHHHHHHHhh-CCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeeccc
Confidence 456778899999887 9999999999999999999999999987 77777777877544221 111 1
Q ss_pred c-c-ccccccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 227 Y-Y-GMGFGGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 227 ~-y-~~a~GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
. | .|| .|+||+||+.+++.|...... .+....+|.-+|.|+.++||+.++.|
T Consensus 142 ~~yP~y~-~G~~yvls~~~v~~i~~~~~~----~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 142 DYYPPYC-SGGGYVLSSDVVKRIYKASSH----TPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred ccCCCcC-CCCeEEecHHHHHHHHHHhhc----CCCCCchHHHHHHHHHHCCCCccCCC
Confidence 0 1 233 688999999999999986422 22233467779999999999987654
No 10
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=98.77 E-value=1.8e-07 Score=97.64 Aligned_cols=146 Identities=14% Similarity=0.063 Sum_probs=95.8
Q ss_pred chhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCccccccccccccc-ccccceec
Q 010780 162 DAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGF-GGGGFAIS 240 (501)
Q Consensus 162 ~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~-GGaGivLS 240 (501)
.-.|.+..++++++. +|++++++++|||+|++.++++..|. ..+.+.+|+|.......... .++ ..| +|.||+||
T Consensus 182 mT~KT~l~~~wA~~~-cP~a~YImKgDDDvFVrVp~lL~~Lr-~~prr~LY~G~v~~~~~p~R-d~~-PpY~~G~gYvLS 257 (382)
T PTZ00210 182 MSRKTYLWLRFALHM-FPNVSYIVKGDDDIFIRVPKYLADLR-VMPRHGLYMGRYNYYNRIWR-RNQ-LTYVNGYCITLS 257 (382)
T ss_pred hhHHHHHHHHHHHHh-CCCCCeEEEcCCCeEeeHHHHHHHHh-hCCCCceEEEeeCCCCcccc-CCC-CCccccceeecc
Confidence 456777788888887 89999999999999999999999994 45677899998865432111 111 233 78999999
Q ss_pred HHHHHHHHHHHHHh-h----------hcCC--CCCCchHHHHHHHHh-cC-CCe-eecC-CCcccccCCCcccccccCCC
Q 010780 241 YALAKALEKIQDEC-L----------HRNP--SLYGSDERIFACMME-LG-VPL-TKHP-GFHQLDIYGDLSGILMAHPV 303 (501)
Q Consensus 241 r~ll~~L~~~~d~C-~----------~~~~--~~~~~D~~Lg~Ci~~-lG-V~l-t~~~-gfhq~d~~gd~~g~~~s~~~ 303 (501)
+.+++.|....... + +.|. ....+|.++|.-|.. ++ -++ +... .-|-+|..... + .+++
T Consensus 258 rDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k~~~l~~V~~~~c~Fhd~~~~~-~---~~~v 333 (382)
T PTZ00210 258 RDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVVYRNLISVEMGRCHFHNAGKFG-V---RKSV 333 (382)
T ss_pred HHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcCcCceeeeccccccceecCCCC-C---cccc
Confidence 99999999763211 1 0111 235789999999964 32 222 2233 33333443211 1 1122
Q ss_pred -CceeeeccCCCC
Q 010780 304 -APILSLHHLDLI 315 (501)
Q Consensus 304 -~PlvSlHHl~~~ 315 (501)
.-.|-+||++..
T Consensus 334 ~~~sVvvHhike~ 346 (382)
T PTZ00210 334 RNMSVVIHHIQEA 346 (382)
T ss_pred ccceEEEEecCHH
Confidence 236899999885
No 11
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.32 E-value=3.9e-06 Score=83.36 Aligned_cols=182 Identities=20% Similarity=0.282 Sum_probs=108.2
Q ss_pred ceEEEEEecCCchhHhhHHHHHhhhcCC-------CccE--EEEe-cCCC-CCCC------CCCCCCC-eeec-CCCCcc
Q 010780 92 KHVVFGIGASSSTWEHRRNYIRTWWRPN-------VTRG--HVWL-DKPV-KNSS------IDHLLPP-IKVS-GDTSKF 152 (501)
Q Consensus 92 ~~IvFgI~TS~k~~~~R~~~ik~Ww~~~-------~~rg--~vfl-d~~~-~~~~------~~~~LP~-v~is-~dts~f 152 (501)
--.|+||+|+....++|...-.+|.... ..+| ..|+ .... +... ++..--. +.|. +.+
T Consensus 11 ~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E--- 87 (274)
T KOG2288|consen 11 VLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE--- 87 (274)
T ss_pred eEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH---
Confidence 3567899999999988887667776641 1233 2333 2211 1000 0000111 2222 111
Q ss_pred cccCCCCCcchhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcc----------c
Q 010780 153 QYKNPIGTRDAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHL----------Q 222 (501)
Q Consensus 153 ~y~~~~g~~~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~----------~ 222 (501)
.| .+...|...++..++++ =++++|+++|||+|+++..|...|+++-....+|||....... +
T Consensus 88 ~Y-----~~Ls~Kt~~~f~~A~~~--~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Ep 160 (274)
T KOG2288|consen 88 AY-----EELSAKTKAFFSAAVAH--WDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEP 160 (274)
T ss_pred HH-----HHHHHHHHHHHHHHHHh--ccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccCh
Confidence 12 12344555677777765 3689999999999999999999999987778899998743211 1
Q ss_pred cccccc---cccc-ccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCCCcc
Q 010780 223 NLAFYY---GMGF-GGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGFHQ 287 (501)
Q Consensus 223 ~~~f~y---~~a~-GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~gfhq 287 (501)
...||- .|.| -|+||+||+.|+.-|+-..+- +..|. .+|+-||.-+.-+.|.-.+.+.++.
T Consensus 161 eWkfg~~g~YfrhA~G~~YvlS~dLa~yi~in~~l-L~~y~---nEDVSlGaW~~gldV~h~dd~rlC~ 225 (274)
T KOG2288|consen 161 EWKFGDNGNYFRHATGGGYVLSKDLATYISINRQL-LHKYA---NEDVSLGAWMIGLDVEHVDDPRLCC 225 (274)
T ss_pred hhhcCcccccchhccCceEEeeHHHHHHHHHhHHH-HHhhc---cCCcccceeeeeeeeeEecCCcccc
Confidence 111221 1222 578999999999988865543 33322 3577799876544444444444443
No 12
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=94.15 E-value=0.043 Score=60.48 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=45.0
Q ss_pred HHHHhhhcCCCCCCchHHHHHHHHh-cCCCeeecCC---CcccccC-CCcccccccCCCCceeeeccCCCC
Q 010780 250 IQDECLHRNPSLYGSDERIFACMME-LGVPLTKHPG---FHQLDIY-GDLSGILMAHPVAPILSLHHLDLI 315 (501)
Q Consensus 250 ~~d~C~~~~~~~~~~D~~Lg~Ci~~-lGV~lt~~~g---fhq~d~~-gd~~g~~~s~~~~PlvSlHHl~~~ 315 (501)
+++.|++...+ ..+|..||+||.+ +||+||++.. +|.++.. .+..+..+...+..+||+|+++..
T Consensus 1 hl~~C~~~~~s-~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p 70 (499)
T PF05679_consen 1 HLDWCLKNIYS-NHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSP 70 (499)
T ss_pred ChhHHhhhcCC-CCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCH
Confidence 35789886542 4678899999996 8999999873 3333332 233344445557788999999885
No 13
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.25 E-value=0.23 Score=44.03 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=58.4
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCCCCC-ceEEccCCCcccccccccccccccccceecHHHHHHHHHHHHHhhhcC
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNEY-YYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRN 258 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p-~YIG~~se~~~~~~~f~y~~a~GGaGivLSr~ll~~L~~~~d~C~~~~ 258 (501)
+.+|++++|||.++..+.|.+++..+..... ..+|.. ..|+++++++.+++++....+..
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~---- 134 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------VSGAFLLVRREVFEEVGGFDEDF---- 134 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------CceeeEeeeHHHHHHcCCCChhh----
Confidence 6899999999999998888888876543332 233332 57889999999998865322221
Q ss_pred CCCCCchHHHHHHHHhcCCCeeecC
Q 010780 259 PSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 259 ~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
..+++|..+...+.+.|.++...+
T Consensus 135 -~~~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 135 -FLYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred -hccccHHHHHHHHHHcCCeEEEcc
Confidence 125668888887777777765544
No 14
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=91.18 E-value=12 Score=39.69 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccc-----------ccc--ccc----------c-ccc
Q 010780 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQN-----------LAF--YYG----------M-GFG 233 (501)
Q Consensus 178 ~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~-----------~~f--~y~----------~-a~G 233 (501)
.++.+|+++.|+|+.+.++.|.++++.+.....-.++.......+. ..+ .+. . .--
T Consensus 131 ~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (384)
T TIGR03469 131 APPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAA 210 (384)
T ss_pred CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhcCCCccceeec
Confidence 4458999999999999988888888766433222222211100000 000 000 0 014
Q ss_pred cccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCee
Q 010780 234 GGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLT 280 (501)
Q Consensus 234 GaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt 280 (501)
|++++++|++.+++...-+.. ....+|..|++-+++.|-++.
T Consensus 211 G~~~lirr~~~~~vGGf~~~~-----~~~~ED~~L~~r~~~~G~~v~ 252 (384)
T TIGR03469 211 GGCILIRREALERIGGIAAIR-----GALIDDCTLAAAVKRSGGRIW 252 (384)
T ss_pred ceEEEEEHHHHHHcCCHHHHh-----hCcccHHHHHHHHHHcCCcEE
Confidence 778999999999986653221 134678889999988875544
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.91 E-value=0.54 Score=44.20 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=58.6
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccccccccccccccccceecHHHHHHHHHHHHHhhhcC
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRN 258 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~GGaGivLSr~ll~~L~~~~d~C~~~~ 258 (501)
...+|++++|+|+.+.++-|.++|..+...+--.+|.. ...|+++++.+.+++++.... .-
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~--------------~~~g~~~~~r~~~~~~~ggf~-~~---- 145 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL--------------CAFGKSMALRREVLDAIGGFE-AF---- 145 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee--------------cccCceeeeEHHHHHhccChH-HH----
Confidence 45799999999999988888888877532222223322 245789999999999875431 11
Q ss_pred CCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 259 PSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 259 ~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
....++|..|+.-+.+.|..+...+.
T Consensus 146 ~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 146 ADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 11235688888888778876654443
No 16
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=90.55 E-value=1.9 Score=40.81 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCC-CCCC----ceEEccCCCcccc-----cc--------c-cccccccccccee
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYD-HNEY----YYIGYPSESHLQN-----LA--------F-YYGMGFGGGGFAI 239 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD-~~~p----~YIG~~se~~~~~-----~~--------f-~y~~a~GGaGivL 239 (501)
...+++++.|+|+.+.++-|.++++.+. +.-. +|.+.+....... .. + +..+ --|+.+++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~-~~G~~m~~ 108 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPF-AWGGSMAF 108 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCc-eecceeee
Confidence 6789999999999999999998888764 3332 4444443322110 00 1 1112 24677899
Q ss_pred cHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 240 SYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 240 Sr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
.+.+++++.... .+. ...++|..||+.+.+.|.++...+
T Consensus 109 rr~~L~~~GG~~--~l~---~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 109 RREALEEIGGFE--ALA---DYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred EHHHHHHcccHH--HHh---hhhhHHHHHHHHHHHCCCeEEEcc
Confidence 999998864321 111 235778889999999998876655
No 17
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=90.53 E-value=0.96 Score=42.96 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=57.2
Q ss_pred HHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcC-CCCCCceEEccCCCccc-------cc----c------c--cc
Q 010780 169 IVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKY-DHNEYYYIGYPSESHLQ-------NL----A------F--YY 228 (501)
Q Consensus 169 mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~y-D~~~p~YIG~~se~~~~-------~~----~------f--~y 228 (501)
.+.+..+.. ..+|++++|||+.+.++-|.++++.+ ++.-...-|...-...+ .. . . ..
T Consensus 77 a~n~~~~~~--~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (228)
T PF13641_consen 77 ALNEALAAA--RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRAL 154 (228)
T ss_dssp HHHHHHHH-----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B--
T ss_pred HHHHHHHhc--CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhccc
Confidence 344555542 38999999999999988888888887 44433333332111000 00 0 0 01
Q ss_pred c-cccccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 229 G-MGFGGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 229 ~-~a~GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
. ....|+++++.+.+++++...- . ...++|..++.-+...|.++...+
T Consensus 155 ~~~~~~G~~~~~rr~~~~~~g~fd-~------~~~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 155 GVAFLSGSGMLFRRSALEEVGGFD-P------FILGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp --S-B--TEEEEEHHHHHHH-S---S------SSSSHHHHHHHHHHHTT--EEEEE
T ss_pred ceeeccCcEEEEEHHHHHHhCCCC-C------CCcccHHHHHHHHHHCCCcEEEEC
Confidence 1 2235799999999999986432 1 235678889888878887765443
No 18
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=88.81 E-value=1.6 Score=41.66 Aligned_cols=99 Identities=14% Similarity=0.026 Sum_probs=56.3
Q ss_pred CccEEEEEcCCeeeehHHHHHHH---hcCCCCCCc-eEEccCCCcc-----ccccc-c----------c----ccccccc
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVL---SKYDHNEYY-YIGYPSESHL-----QNLAF-Y----------Y----GMGFGGG 235 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~L---s~yD~~~p~-YIG~~se~~~-----~~~~f-~----------y----~~a~GGa 235 (501)
+++|++++|+|+.+.++.|.+++ ..+...... .+|....... ....+ . . .....|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 68999999999999988888875 333222222 2222211000 00000 0 0 0112467
Q ss_pred cceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 236 GFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
|+++++.+++++...-+.. ...++|..+..-+.+.|..+...+
T Consensus 155 ~~~~rr~~~~~~ggfd~~~-----~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 155 GSLISLEALEKVGGFDEDL-----FIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred ceEEcHHHHHHhCCCCHHH-----cCccchHHHHHHHHHcCCcEEEEc
Confidence 8899999998876432222 123568888877777886665443
No 19
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=86.30 E-value=2.3 Score=40.27 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.0
Q ss_pred cccccccceecHHHHHHHHHHH
Q 010780 230 MGFGGGGFAISYALAKALEKIQ 251 (501)
Q Consensus 230 ~a~GGaGivLSr~ll~~L~~~~ 251 (501)
..+|.+||+||+.++++|....
T Consensus 168 ~~~~t~aY~Is~~gA~kLL~~~ 189 (200)
T PF01755_consen 168 YPYGTCAYLISRKGARKLLEAS 189 (200)
T ss_pred CCCcceeeeeCHHHHHHHHHhC
Confidence 4568899999999999999864
No 20
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.27 E-value=2.1 Score=39.90 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=55.6
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCC-CCCCceEEccCCCcccccccccccccccccceecHHHHHHHHHHHHHhhhc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYD-HNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHR 257 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD-~~~p~YIG~~se~~~~~~~f~y~~a~GGaGivLSr~ll~~L~~~~d~C~~~ 257 (501)
.+.+|++++|||+.+..+.|.++++.++ +.-.++.|...... + .++|+++.+.+++++.-. +. .
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~g~~-~~---~ 142 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPD------G-----SFVGVLISRRVVEKIGLP-DK---E 142 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCC------C-----ceEEEEEeHHHHHHhCCC-Ch---h
Confidence 4689999999999999888888777765 32233333321110 0 456789999998876421 11 1
Q ss_pred CCCCCCchHHHHHHHHhcCCCe
Q 010780 258 NPSLYGSDERIFACMMELGVPL 279 (501)
Q Consensus 258 ~~~~~~~D~~Lg~Ci~~lGV~l 279 (501)
+ ..+++|..+..=+.+.|..+
T Consensus 143 ~-~~~~eD~~~~~r~~~~G~~i 163 (202)
T cd04185 143 F-FIWGDDTEYTLRASKAGPGI 163 (202)
T ss_pred h-hccchHHHHHHHHHHcCCcE
Confidence 2 24677888887777777666
No 21
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=82.79 E-value=3.1 Score=41.46 Aligned_cols=100 Identities=15% Similarity=0.035 Sum_probs=53.9
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCC--CCceEEccCCCcc-----cccc------------c--cc--ccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHN--EYYYIGYPSESHL-----QNLA------------F--YY--GMGFGGG 235 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~--~p~YIG~~se~~~-----~~~~------------f--~y--~~a~GGa 235 (501)
.+.+|++++|||+.+..+.|.+++..++.. .-..+|...-... .... . .. .....++
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 151 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISS 151 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcC
Confidence 368999999999999987777777655433 2233332210000 0000 0 00 0011456
Q ss_pred cceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 236 GFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
|.++++.+++++...-+.. ..+..|..+..=+.+.|..+...+
T Consensus 152 g~li~~~~~~~iG~fde~~-----fi~~~D~e~~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 152 GCLITREVYQRLGMMDEEL-----FIDHVDTEWSLRAQNYGIPLYIDP 194 (281)
T ss_pred cceeeHHHHHHhCCccHhh-----cccchHHHHHHHHHHCCCEEEEeC
Confidence 7899999999875432221 123456665443445676555444
No 22
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.27 E-value=4.7 Score=37.81 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=55.6
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCC-CCCceEEccCCCcccc-------c-------------ccccccccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDH-NEYYYIGYPSESHLQN-------L-------------AFYYGMGFGGGGF 237 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~-~~p~YIG~~se~~~~~-------~-------------~f~y~~a~GGaGi 237 (501)
...+|++++|+|+.+.++-|.+++..+.. ....+.|......... . ..+..+..-|+++
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANM 160 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceE
Confidence 35799999999999988888888876543 3445666543221100 0 0011122357888
Q ss_pred eecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCC
Q 010780 238 AISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGV 277 (501)
Q Consensus 238 vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV 277 (501)
++++.+++++..... ......+|..+..-+.+.|-
T Consensus 161 ~~rr~~~~~~ggf~~-----~~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 161 AYRKEAFFEVGGFEG-----NDHIASGDDELLLAKVASKY 195 (229)
T ss_pred EEEHHHHHHhcCCcc-----ccccccCCHHHHHHHHHhCC
Confidence 999999998754311 01234567776654444444
No 23
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=81.27 E-value=4.2 Score=36.89 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=56.2
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccccccccccccccccceecHHHHHHHHHHHHHhhhcC
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRN 258 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~GGaGivLSr~ll~~L~~~~d~C~~~~ 258 (501)
...+|++++|+|+.+..+-|.+++...++. ....|.......... .....|+++++.+..+.++... +.+ +
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~ggf-~~~---~ 148 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELAEPG-VFLSGSRVLLNEKLT----ERGIRGCNMSFWKKDLLAVNGF-DEE---F 148 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHhCCC-cEEecceeecccccc----eeEeccceEEEEHHHHHHhCCC-Ccc---c
Confidence 356999999999999887788888776433 344455432211111 1245677888888888754432 222 1
Q ss_pred CCCCCchHHHHHHHHhcCCCee
Q 010780 259 PSLYGSDERIFACMMELGVPLT 280 (501)
Q Consensus 259 ~~~~~~D~~Lg~Ci~~lGV~lt 280 (501)
....++|..++.=+.+.|+.+.
T Consensus 149 ~~~~~eD~~l~~r~~~~g~~~~ 170 (182)
T cd06420 149 TGWGGEDSELVARLLNSGIKFR 170 (182)
T ss_pred ccCCcchHHHHHHHHHcCCcEE
Confidence 1112467778877777775443
No 24
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=81.22 E-value=2.9 Score=37.31 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccccccccccccccccceecHHHHHHH
Q 010780 168 RIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKAL 247 (501)
Q Consensus 168 ~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~GGaGivLSr~ll~~L 247 (501)
.+++++.+ .+.++.++.|||..+..+ |.+||+||+.++++|
T Consensus 73 ~~w~~~~~---~~~~~alIlEDDv~~~~~------------------------------------~~~~Y~vs~~~A~~l 113 (128)
T cd06532 73 KLWQKIVE---SNLEYALILEDDAILDPD------------------------------------GTAGYLVSRKGAKKL 113 (128)
T ss_pred HHHHHHHH---cCCCeEEEEccCcEECCC------------------------------------CceEEEeCHHHHHHH
Confidence 34455543 456899999999998766 778999999999999
Q ss_pred HHHH
Q 010780 248 EKIQ 251 (501)
Q Consensus 248 ~~~~ 251 (501)
....
T Consensus 114 l~~~ 117 (128)
T cd06532 114 LAAL 117 (128)
T ss_pred HHhC
Confidence 9864
No 25
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=81.20 E-value=5.7 Score=37.73 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=25.2
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCC
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYD 206 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD 206 (501)
+.+|++++|+|+.+..+.|.+++..++
T Consensus 77 ~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 77 TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 689999999999999999999999886
No 26
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=80.39 E-value=2.5 Score=39.98 Aligned_cols=93 Identities=14% Similarity=0.026 Sum_probs=56.2
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCC-CCCceEEcc-CC----Cc---ccc-----ccc------cc----ccccccc
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDH-NEYYYIGYP-SE----SH---LQN-----LAF------YY----GMGFGGG 235 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~-~~p~YIG~~-se----~~---~~~-----~~f------~y----~~a~GGa 235 (501)
+.+|++++|+|+++.++-|.++++.++. .+.-.++.. .. .. ... ..+ +. .....|+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 163 (234)
T cd06421 84 TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGS 163 (234)
T ss_pred CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCc
Confidence 6799999999999999888888887755 222233221 00 00 000 000 00 1123578
Q ss_pred cceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCe
Q 010780 236 GFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPL 279 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~l 279 (501)
|.++++.+++++.... . ..+++|..++.=+.+.|..+
T Consensus 164 ~~~~r~~~~~~ig~~~-~------~~~~eD~~l~~r~~~~g~~i 200 (234)
T cd06421 164 GAVVRREALDEIGGFP-T------DSVTEDLATSLRLHAKGWRS 200 (234)
T ss_pred eeeEeHHHHHHhCCCC-c------cceeccHHHHHHHHHcCceE
Confidence 9999999998865421 1 23467877887666666554
No 27
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=80.21 E-value=3.6 Score=38.23 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=57.2
Q ss_pred EEEEEcCCeeeehHHHHHHHhcCC-CCCCceEEccC----CCcc---cccc--------------cccccccccccceec
Q 010780 183 WFVMGDDDTVFFLDNLARVLSKYD-HNEYYYIGYPS----ESHL---QNLA--------------FYYGMGFGGGGFAIS 240 (501)
Q Consensus 183 Wfv~~DDDTy~~~~nLv~~Ls~yD-~~~p~YIG~~s----e~~~---~~~~--------------f~y~~a~GGaGivLS 240 (501)
|+++.|+||.+..+-|.+++..++ ++-...-|... .+.. +... ++.....-|+|.+++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~r 80 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLFR 80 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceeee
Confidence 789999999999988888888776 22111111111 1100 1100 111112379999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 241 YALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 241 r~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
+++++++....+ ....++|..++.=+.+.|-.+...+
T Consensus 81 ~~~l~~vg~~~~------~~~~~ED~~l~~~l~~~G~~~~~~~ 117 (193)
T PF13632_consen 81 REALREVGGFDD------PFSIGEDMDLGFRLRRAGYRIVYVP 117 (193)
T ss_pred HHHHHHhCcccc------cccccchHHHHHHHHHCCCEEEEec
Confidence 999998763320 1245788888877777776654443
No 28
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=80.06 E-value=3.1 Score=39.08 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=41.7
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccC--CCcc-------ccccc-------------ccccccccccc
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPS--ESHL-------QNLAF-------------YYGMGFGGGGF 237 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~s--e~~~-------~~~~f-------------~y~~a~GGaGi 237 (501)
+.+|++++|.|+.+.++-|.+++..+...+--.++... .... +...| .....+||.|.
T Consensus 89 ~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~ 168 (191)
T cd06436 89 ERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQ 168 (191)
T ss_pred CccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeE
Confidence 35799999999999988888866655422222222221 0000 00001 01234699999
Q ss_pred eecHHHHHHH
Q 010780 238 AISYALAKAL 247 (501)
Q Consensus 238 vLSr~ll~~L 247 (501)
++++.+++++
T Consensus 169 ~~r~~~l~~v 178 (191)
T cd06436 169 FMRLSALDGL 178 (191)
T ss_pred EEeHHHHHHh
Confidence 9999999988
No 29
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=79.77 E-value=2.5 Score=39.12 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=30.2
Q ss_pred CCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEcc
Q 010780 178 LKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYP 216 (501)
Q Consensus 178 ~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~ 216 (501)
..+.+|+++.|.|+.+.++-|.+++..+........|..
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~ 117 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYY 117 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEE
Confidence 356899999999999999888888887755445555543
No 30
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=76.17 E-value=14 Score=34.74 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=62.8
Q ss_pred ccEEEEEcCCeeeehHHHHHHHhc-CCCCCCceEEccCCCcccc----cc---c-------------cccccc-ccccce
Q 010780 181 VRWFVMGDDDTVFFLDNLARVLSK-YDHNEYYYIGYPSESHLQN----LA---F-------------YYGMGF-GGGGFA 238 (501)
Q Consensus 181 ~~Wfv~~DDDTy~~~~nLv~~Ls~-yD~~~p~YIG~~se~~~~~----~~---f-------------~y~~a~-GGaGiv 238 (501)
.+|++++|+|..+.++.|.+++.. .+....+.+|......... .. + +..+.. ..+..+
T Consensus 83 gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~ 162 (211)
T cd04188 83 GDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFKL 162 (211)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCcee
Confidence 499999999999999888888887 4566678888775332110 00 0 111111 234578
Q ss_pred ecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCCC
Q 010780 239 ISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPGF 285 (501)
Q Consensus 239 LSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~gf 285 (501)
+++.+++++.+... ...|..|..+..-+.+.|.++...|--
T Consensus 163 ~~r~~~~~~~~~~~------~~~~~~d~el~~r~~~~g~~~~~vpi~ 203 (211)
T cd04188 163 FTRDAARRLFPRLH------LERWAFDVELLVLARRLGYPIEEVPVR 203 (211)
T ss_pred EcHHHHHHHHhhhh------ccceEeeHHHHHHHHHcCCeEEEcCcc
Confidence 99999988764321 123556877666666777776665543
No 31
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=75.98 E-value=4.6 Score=38.67 Aligned_cols=96 Identities=14% Similarity=0.024 Sum_probs=54.7
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCC------Ccc---ccc----cc----------ccccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSE------SHL---QNL----AF----------YYGMGFGGG 235 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se------~~~---~~~----~f----------~y~~a~GGa 235 (501)
.+.+|++++|+|+.+.++-|.+++..+...+--.++.... ... +.. .+ +..+...|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 165 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGT 165 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccc
Confidence 3689999999999999888888665554333223333211 000 000 00 000113466
Q ss_pred cceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeee
Q 010780 236 GFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTK 281 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~ 281 (501)
+.++.+.+++++... +. ....+|..|+.-+...|..+..
T Consensus 166 ~~~~rr~~~~~vgg~-~~------~~~~ED~~l~~rl~~~G~~~~~ 204 (232)
T cd06437 166 AGVWRKECIEDAGGW-NH------DTLTEDLDLSYRAQLKGWKFVY 204 (232)
T ss_pred hhhhhHHHHHHhCCC-CC------CcchhhHHHHHHHHHCCCeEEE
Confidence 667888887776432 11 1356788888888777765543
No 32
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=75.63 E-value=11 Score=35.91 Aligned_cols=103 Identities=17% Similarity=0.070 Sum_probs=59.8
Q ss_pred HHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccc-------ccccc---------------c
Q 010780 172 ESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQN-------LAFYY---------------G 229 (501)
Q Consensus 172 e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~-------~~f~y---------------~ 229 (501)
...+....+.+|+++.|+|+.+.++.|.++++.+...+--.++.+....... ..+.+ .
T Consensus 76 ~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (236)
T cd06435 76 YALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNA 155 (236)
T ss_pred HHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccccCc
Confidence 3444323457999999999999988888888877533322333321110000 00000 0
Q ss_pred cccccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeee
Q 010780 230 MGFGGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTK 281 (501)
Q Consensus 230 ~a~GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~ 281 (501)
....|+++++++.+++++... +.+ .+.+|..++.=+.+.|-.+..
T Consensus 156 ~~~~g~~~~~rr~~~~~iGgf-~~~------~~~eD~dl~~r~~~~G~~~~~ 200 (236)
T cd06435 156 IIQHGTMCLIRRSALDDVGGW-DEW------CITEDSELGLRMHEAGYIGVY 200 (236)
T ss_pred eEEecceEEEEHHHHHHhCCC-CCc------cccchHHHHHHHHHCCcEEEE
Confidence 012466789999999887532 222 246788788777677766543
No 33
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=75.38 E-value=4.5 Score=39.24 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=57.5
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCCC--CCceEEccCCCc--ccc-------c----c----------ccccccccc
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHN--EYYYIGYPSESH--LQN-------L----A----------FYYGMGFGG 234 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~--~p~YIG~~se~~--~~~-------~----~----------f~y~~a~GG 234 (501)
..+|++++|+|+.+.++.|.+++..+... +-.++|...... .++ . . .+.....+|
T Consensus 84 ~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (241)
T cd06427 84 RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGG 163 (241)
T ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 45999999999999998888888877532 223444331110 000 0 0 011123578
Q ss_pred ccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeec
Q 010780 235 GGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKH 282 (501)
Q Consensus 235 aGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~ 282 (501)
+++++++.+++++...-+ ..+.+|..++.=+.+.|..+...
T Consensus 164 ~~~~~rr~~~~~vgg~~~-------~~~~eD~~l~~rl~~~G~r~~~~ 204 (241)
T cd06427 164 TSNHFRTDVLRELGGWDP-------FNVTEDADLGLRLARAGYRTGVL 204 (241)
T ss_pred chHHhhHHHHHHcCCCCc-------ccchhhHHHHHHHHHCCceEEEe
Confidence 889999999888754311 12456777776555666555433
No 34
>PRK11204 N-glycosyltransferase; Provisional
Probab=73.27 E-value=5.1 Score=42.43 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcC--CCCCCceEEccCCCcc-------ccc--------------ccccccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKY--DHNEYYYIGYPSESHL-------QNL--------------AFYYGMGFGGG 235 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~y--D~~~p~YIG~~se~~~-------~~~--------------~f~y~~a~GGa 235 (501)
.+.+|+++.|+|+.+.++-|.++++.+ |++-...-|.+..... +.. .++..++.+|+
T Consensus 133 a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 212 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGV 212 (420)
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecce
Confidence 357999999999999999888888887 3332223232211000 000 01111234688
Q ss_pred cceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 236 GFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
+.++.+.+++++.... ....++|..++.-+.+.|.++...|.
T Consensus 213 ~~~~rr~~l~~vgg~~-------~~~~~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 213 ITAFRKSALHEVGYWS-------TDMITEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred eeeeeHHHHHHhCCCC-------CCcccchHHHHHHHHHcCCeEEeccc
Confidence 8899999988764321 12356788898888888876655543
No 35
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=72.98 E-value=11 Score=39.65 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=61.8
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCccc-c-----------ccc----------cc-ccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQ-N-----------LAF----------YY-GMGFGGG 235 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~-~-----------~~f----------~y-~~a~GGa 235 (501)
...+|+++.|+|+.+.++-|.++++.+...+--.++........ . ..| +. .+ -.|+
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~G~ 203 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARALGRARF-CFGA 203 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCcc-ccCh
Confidence 45899999999999999999988888743222222222111100 0 000 10 11 2467
Q ss_pred cceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 236 GFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
.+++.|++++++...... .....+|..|+.=+.+.|..+...+.
T Consensus 204 ~~a~RR~~l~~iGGf~~~-----~~~~~ED~~l~~~i~~~G~~v~~~~~ 247 (373)
T TIGR03472 204 TMALRRATLEAIGGLAAL-----AHHLADDYWLGELVRALGLRVVLAPV 247 (373)
T ss_pred hhheeHHHHHHcCChHHh-----cccchHHHHHHHHHHHcCCeEEecch
Confidence 789999999887754211 12346788899999888876655443
No 36
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.81 E-value=5.1 Score=37.10 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=53.9
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCC--CCCceEEccCCCccc------cc---------ccc-cccccccccceec
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDH--NEYYYIGYPSESHLQ------NL---------AFY-YGMGFGGGGFAIS 240 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~--~~p~YIG~~se~~~~------~~---------~f~-y~~a~GGaGivLS 240 (501)
.+.+|++++|+|.++.++.|.+++..+.. .-.++.|........ .. .+. ......|+++++.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 158 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRRSPFNHPTVMFR 158 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCHHHHHHHhccCCCCCChHHhhh
Confidence 35799999999999998888887776632 223333332110000 00 000 0122356667777
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeee
Q 010780 241 YALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTK 281 (501)
Q Consensus 241 r~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~ 281 (501)
+.+++++.... . ..+++|..+...+...|..+..
T Consensus 159 r~~~~~~g~~~-----~--~~~~eD~~~~~r~~~~g~~~~~ 192 (201)
T cd04195 159 KSKVLAVGGYQ-----D--LPLVEDYALWARMLANGARFAN 192 (201)
T ss_pred HHHHHHcCCcC-----C--CCCchHHHHHHHHHHcCCceec
Confidence 77766643211 1 1456788888777766655443
No 37
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.46 E-value=9.4 Score=35.22 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=57.2
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCC--CCCCceEEccCCCc----ccc--------cccccccccccccceecHHHHH
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYD--HNEYYYIGYPSESH----LQN--------LAFYYGMGFGGGGFAISYALAK 245 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD--~~~p~YIG~~se~~----~~~--------~~f~y~~a~GGaGivLSr~ll~ 245 (501)
..+|++++|+|..+.++.|.++++.++ +.-.+..|...... ... ..+.....+.|++.++++.+++
T Consensus 83 ~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 162 (202)
T cd04184 83 TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLVR 162 (202)
T ss_pred cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHHH
Confidence 469999999999998888888887763 22223333221100 000 0000123456677789999988
Q ss_pred HHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 246 ALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 246 ~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
++... +.. + ..++|..|+.=+.+.|..+...+
T Consensus 163 ~iggf-~~~---~--~~~eD~~l~~rl~~~g~~~~~~~ 194 (202)
T cd04184 163 QVGGF-REG---F--EGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred HhCCC-CcC---c--ccchhHHHHHHHHhccceEEEcc
Confidence 87632 111 1 23567777766666777665554
No 38
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=69.47 E-value=16 Score=34.66 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=51.9
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCCCC-CceEEccCCCcc---c------------c--ccccc-----cccccccc
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNE-YYYIGYPSESHL---Q------------N--LAFYY-----GMGFGGGG 236 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~-p~YIG~~se~~~---~------------~--~~f~y-----~~a~GGaG 236 (501)
+.+|++++|+|+.+.++-|.+++..+.... ....|....... + . ..+.. .+...|++
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHH 160 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccccccccccccc
Confidence 579999999999988877888886553333 333333211000 0 0 00000 12345677
Q ss_pred ceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCee
Q 010780 237 FAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLT 280 (501)
Q Consensus 237 ivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt 280 (501)
.++++.+++++.. ++.. + ..++|..++.=+.+.|..+.
T Consensus 161 ~~~~~~~~~~~g~-~~~~---~--~~~eD~~l~~r~~~~G~~~~ 198 (249)
T cd02525 161 GAYRREVFEKVGG-FDES---L--VRNEDAELNYRLRKAGYKIW 198 (249)
T ss_pred ceEEHHHHHHhCC-CCcc---c--CccchhHHHHHHHHcCcEEE
Confidence 7889988877642 2111 1 23567776654445565543
No 39
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.35 E-value=14 Score=33.53 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=54.9
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcC--CCCCCceEEccCCC---cc-cc---------cccccccccccccceecHHHH
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKY--DHNEYYYIGYPSES---HL-QN---------LAFYYGMGFGGGGFAISYALA 244 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~y--D~~~p~YIG~~se~---~~-~~---------~~f~y~~a~GGaGivLSr~ll 244 (501)
..+|++++|+|..+..+.+.++|... ++...+..|..... .. .. ..+.......|+|+++++.++
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSLF 154 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHHH
Confidence 46999999999999988888887322 23334455543211 00 00 001112345778899999999
Q ss_pred HHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCe
Q 010780 245 KALEKIQDECLHRNPSLYGSDERIFACMMELGVPL 279 (501)
Q Consensus 245 ~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~l 279 (501)
+++.. ++. .+ .+++|..+..=+.+.|...
T Consensus 155 ~~~~~-f~~---~~--~~~~D~~~~~r~~~~g~~~ 183 (202)
T cd06433 155 EKYGG-FDE---SY--RIAADYDLLLRLLLAGKIF 183 (202)
T ss_pred HHhCC-Cch---hh--CchhhHHHHHHHHHcCCce
Confidence 88754 211 11 2456777665555556554
No 40
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=69.14 E-value=19 Score=35.02 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=56.6
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCC-CCCCceEEccCCCccc--c----cc-------------cccccc-cccccce
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYD-HNEYYYIGYPSESHLQ--N----LA-------------FYYGMG-FGGGGFA 238 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD-~~~p~YIG~~se~~~~--~----~~-------------f~y~~a-~GGaGiv 238 (501)
..+|++++|+|..+.++.|.+++..+. ..-.+.+|........ . .. ++.... ..|+-.+
T Consensus 93 ~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 172 (243)
T PLN02726 93 SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRL 172 (243)
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccc
Confidence 468999999999998888888887663 3456777765321100 0 00 011111 2344457
Q ss_pred ecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 239 ISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 239 LSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
+++.+++++....+. ..|..|..|..=+...|..+...|-
T Consensus 173 ~rr~~~~~i~~~~~~------~~~~~~~el~~~~~~~g~~i~~vp~ 212 (243)
T PLN02726 173 YKRSALEDLVSSVVS------KGYVFQMEIIVRASRKGYRIEEVPI 212 (243)
T ss_pred eeHHHHHHHHhhccC------CCcEEehHHHHHHHHcCCcEEEeCc
Confidence 799999988653321 1244455543333356766665543
No 41
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.44 E-value=19 Score=33.24 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCCccEEEEEcCCeeeehHHHHHHHhc-CCCCCCceEEccCC----Ccc--ccccc---c-----------ccccccccc
Q 010780 178 LKDVRWFVMGDDDTVFFLDNLARVLSK-YDHNEYYYIGYPSE----SHL--QNLAF---Y-----------YGMGFGGGG 236 (501)
Q Consensus 178 ~~~~~Wfv~~DDDTy~~~~nLv~~Ls~-yD~~~p~YIG~~se----~~~--~~~~f---~-----------y~~a~GGaG 236 (501)
..+.+|+++.|+|.++.++.|..++.. .......+++.... ... ....+ . ......|++
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCT 156 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCce
Confidence 356899999999999988888888876 33334434443211 000 00000 0 012347889
Q ss_pred ceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcC
Q 010780 237 FAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELG 276 (501)
Q Consensus 237 ivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lG 276 (501)
+++.+.+++++...... ..+..|..+...+...|
T Consensus 157 ~~~r~~~~~~~~~~~~~------~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 157 MAFNRELLELALPFPDA------DVIMHDWWLALLASAFG 190 (214)
T ss_pred eeEEHHHHHhhcccccc------ccccchHHHHHHHHHcC
Confidence 99999999887653211 02455766666655533
No 42
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=68.06 E-value=7.2 Score=42.09 Aligned_cols=99 Identities=11% Similarity=0.000 Sum_probs=62.3
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcC--CCCCCceEEccCCCcc-------cc--------------cccccccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKY--DHNEYYYIGYPSESHL-------QN--------------LAFYYGMGFGGG 235 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~y--D~~~p~YIG~~se~~~-------~~--------------~~f~y~~a~GGa 235 (501)
.+.+++++.|+|+.+..+.|.+++..+ |++-...-|.+..... +. ..++..++.+|+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~ 233 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGV 233 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCc
Confidence 467999999999999998888888766 3333233332211000 00 011212344788
Q ss_pred cceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 236 GFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
+.++.+.+++++..... ....+|..++.-+...|-.+..++.
T Consensus 234 ~~~~rr~al~~vGg~~~-------~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 234 VAAFRRRALADVGYWSP-------DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred eeEEEHHHHHHcCCCCC-------CcccccHHHHHHHHHcCCeEEEeec
Confidence 88999999888643211 2346788899999888877665553
No 43
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=67.61 E-value=13 Score=34.83 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=54.1
Q ss_pred ccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccC-CCcc----cc--------cccccccccccccceecHHHHHHH
Q 010780 181 VRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPS-ESHL----QN--------LAFYYGMGFGGGGFAISYALAKAL 247 (501)
Q Consensus 181 ~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~s-e~~~----~~--------~~f~y~~a~GGaGivLSr~ll~~L 247 (501)
.+|++++|+|.++..+.|.+++........ .+|... .... .. ........+++.|+++++.+.+++
T Consensus 73 ~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 151 (221)
T cd02522 73 GDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEEL 151 (221)
T ss_pred CCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHHh
Confidence 699999999999988888887766554433 333321 1100 00 000123446788999999988776
Q ss_pred HHHHHHhhhcCCCCCCchHHHHHHHHhcCCCe
Q 010780 248 EKIQDECLHRNPSLYGSDERIFACMMELGVPL 279 (501)
Q Consensus 248 ~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~l 279 (501)
... +.. .+.+|..+..=+.+.|...
T Consensus 152 G~f-d~~------~~~ED~d~~~r~~~~G~~~ 176 (221)
T cd02522 152 GGF-PEL------PLMEDVELVRRLRRRGRPA 176 (221)
T ss_pred CCC-Ccc------ccccHHHHHHHHHhCCCEE
Confidence 532 211 2566777765555566443
No 44
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=67.50 E-value=13 Score=35.77 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=24.5
Q ss_pred ccEEEEEcCCeeeehHHHHHHHhcCCCCC
Q 010780 181 VRWFVMGDDDTVFFLDNLARVLSKYDHNE 209 (501)
Q Consensus 181 ~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~ 209 (501)
.+|++++|+|+++..+-|.++++.+...+
T Consensus 110 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 110 GEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred CCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 49999999999999888888888885433
No 45
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=66.53 E-value=21 Score=33.48 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=28.0
Q ss_pred ccEEEEEcCCeeeehHHHHHHHhc-CCCCCCceEEcc
Q 010780 181 VRWFVMGDDDTVFFLDNLARVLSK-YDHNEYYYIGYP 216 (501)
Q Consensus 181 ~~Wfv~~DDDTy~~~~nLv~~Ls~-yD~~~p~YIG~~ 216 (501)
.+|++++|+|..+.++.|..++.. .+....+..|..
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 115 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSR 115 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEee
Confidence 489999999999988888888887 455555666654
No 46
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=62.91 E-value=18 Score=32.95 Aligned_cols=69 Identities=13% Similarity=-0.014 Sum_probs=46.8
Q ss_pred ccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccc--------------ccccccc-ccccccceecHHHHH
Q 010780 181 VRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQN--------------LAFYYGM-GFGGGGFAISYALAK 245 (501)
Q Consensus 181 ~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~--------------~~f~y~~-a~GGaGivLSr~ll~ 245 (501)
.+|++++|+|.....+-|.+++..++....+.+|......... ..++... -.+|+.+++++.+++
T Consensus 81 ~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 81 GDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 4999999999998887777888776666677778765332110 0011112 236777889999999
Q ss_pred HHHH
Q 010780 246 ALEK 249 (501)
Q Consensus 246 ~L~~ 249 (501)
++..
T Consensus 161 ~i~~ 164 (181)
T cd04187 161 ALLL 164 (181)
T ss_pred HHHh
Confidence 8775
No 47
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=60.20 E-value=23 Score=29.74 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=44.0
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccccccccccccccccceecHHHHHHHHHHHHHhhhcCC
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQNLAFYYGMGFGGGGFAISYALAKALEKIQDECLHRNP 259 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~y~~a~GGaGivLSr~ll~~L~~~~d~C~~~~~ 259 (501)
+.+|++++|+|..+.++.+..++..+-..+..- .+.|.+++++++..++++....+.-
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~~~~~----- 134 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEAD-----------------AVGGPGNLLFRRELLEEIGGFDEAL----- 134 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCce-----------------EEeccchheeeHHHHHHhCCcchHh-----
Confidence 689999999999998888877644432221111 1112278899999998876543221
Q ss_pred CCCCchHHHHHHHH
Q 010780 260 SLYGSDERIFACMM 273 (501)
Q Consensus 260 ~~~~~D~~Lg~Ci~ 273 (501)
..+++|..+..-+.
T Consensus 135 ~~~~ed~~~~~~~~ 148 (156)
T cd00761 135 LSGEEDDDFLLRLL 148 (156)
T ss_pred cCCcchHHHHHHHH
Confidence 12245665554443
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=58.83 E-value=20 Score=32.44 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=28.8
Q ss_pred cEEEEEcCCeeeehHHHHHHHhc-CCCCCCceEEccC
Q 010780 182 RWFVMGDDDTVFFLDNLARVLSK-YDHNEYYYIGYPS 217 (501)
Q Consensus 182 ~Wfv~~DDDTy~~~~nLv~~Ls~-yD~~~p~YIG~~s 217 (501)
+|++++|+|+.+.++-|.+++.. .+....+.+|...
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 99999999999988888888887 4555566777654
No 49
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=58.14 E-value=20 Score=33.90 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=27.0
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEcc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYP 216 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~ 216 (501)
...+|++++|+|+.+.++.|.+++..+.......+|..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 35699999999999998777776665533334456654
No 50
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=58.05 E-value=13 Score=39.68 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=45.5
Q ss_pred CCCCCCCCccceEEEEEecCCchhHhhHHHHHhhhcCCCccEEEEecCCCCCCCCCCCCCCeeecCC
Q 010780 82 SDDTEDKTSLKHVVFGIGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSSIDHLLPPIKVSGD 148 (501)
Q Consensus 82 ~~~~~~~~~l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~~~rg~vfld~~~~~~~~~~~LP~v~is~d 148 (501)
.+.......-..|++.|.|++.+++.|++.++.+|.+...++.+|... ..+ .+..+|.|.....
T Consensus 81 ~s~~~~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~-~s~--~~~~f~~v~~~~~ 144 (364)
T KOG2246|consen 81 SSIALWLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPT-LSK--DDSRFPTVYYNLP 144 (364)
T ss_pred ccchhccCCCceEEEEEEecCcCceeehhhhhcccccccCcceecCcc-CCC--CCCcCceeeccCC
Confidence 344555667789999999999999999999988888765566665522 221 3556787766533
No 51
>PLN03181 glycosyltransferase; Provisional
Probab=57.37 E-value=3e+02 Score=30.29 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCC
Q 010780 162 DAIRISRIVSESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDH 207 (501)
Q Consensus 162 ~~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~ 207 (501)
..|.-.++++++... .|+++||..+|-||+|.-.++.--|.+|+.
T Consensus 181 ~~WaKipalRaAM~a-~PeAEWfWWLDsDALIMNp~~sLPl~ry~~ 225 (453)
T PLN03181 181 SYWAKLPVVRAAMLA-HPEAEWIWWVDSDAVFTDMDFKLPLHRYRD 225 (453)
T ss_pred hhhhHHHHHHHHHHH-CCCceEEEEecCCceeecCCCCCCHhhcCC
Confidence 345555777777665 899999999999999864433223556643
No 52
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=57.24 E-value=41 Score=35.04 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=60.0
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcC----CCCCCceEEccCCCcc----cc-----------------ccccccccccc
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKY----DHNEYYYIGYPSESHL----QN-----------------LAFYYGMGFGG 234 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~y----D~~~p~YIG~~se~~~----~~-----------------~~f~y~~a~GG 234 (501)
..+|++++|.|+...++.+.+++... ++.-.+.+|.+..... .. ...+..+....
T Consensus 162 ~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~ 241 (333)
T PTZ00260 162 RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQ 241 (333)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 45899999999998876665555543 3445688998742110 00 00122333455
Q ss_pred ccc-eecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 235 GGF-AISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 235 aGi-vLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
.|+ +++|.+++.+.+.. .. ..|.-|.++-..+.+.|.++...|-
T Consensus 242 ~Gfk~~~r~~~~~i~~~~--~~----~~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 242 CGFKLFTRETARIIFPSL--HL----ERWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CCeEEEeHHHHHHHhhhc--cc----cCccchHHHHHHHHHcCCCEEEEce
Confidence 564 88999999886542 11 1345577766666677776655543
No 53
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=50.69 E-value=24 Score=37.04 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=67.4
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCCCCc-eEEccC-------CCcc---ccc--------------ccccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHNEYY-YIGYPS-------ESHL---QNL--------------AFYYGMGFG 233 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~-YIG~~s-------e~~~---~~~--------------~f~y~~a~G 233 (501)
...+++++.|.||....+-|.+++..++...-. +.|.+. .... +.. ..+.....+
T Consensus 136 ~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (439)
T COG1215 136 AKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLS 215 (439)
T ss_pred cCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEc
Confidence 348999999999999999999999998755443 666552 1110 000 011122358
Q ss_pred cccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 234 GGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 234 GaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
|++.++-+++++++..... ...++|..++.=+...|-.+...+.
T Consensus 216 G~~~~~rr~aL~~~g~~~~-------~~i~ED~~lt~~l~~~G~~~~~~~~ 259 (439)
T COG1215 216 GSSSAFRRSALEEVGGWLE-------DTITEDADLTLRLHLRGYRVVYVPE 259 (439)
T ss_pred ceeeeEEHHHHHHhCCCCC-------CceeccHHHHHHHHHCCCeEEEeec
Confidence 9999999999999873322 2356788899888877766655444
No 54
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=49.73 E-value=34 Score=34.27 Aligned_cols=105 Identities=13% Similarity=0.024 Sum_probs=61.8
Q ss_pred CCCccEEEEEcCCeeeehHHHHHHHhcC--CCCC-----CceEEccCCCcccc------ccc------------cccccc
Q 010780 178 LKDVRWFVMGDDDTVFFLDNLARVLSKY--DHNE-----YYYIGYPSESHLQN------LAF------------YYGMGF 232 (501)
Q Consensus 178 ~~~~~Wfv~~DDDTy~~~~nLv~~Ls~y--D~~~-----p~YIG~~se~~~~~------~~f------------~y~~a~ 232 (501)
..+.++++++|.|+.+.++-|.+++..+ |+.- ++.+... .+.... ..| +....+
T Consensus 93 ~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (254)
T cd04191 93 GSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGA-ETLFARLQQFANRLYGPVFGRGLAAWQGGEGNY 171 (254)
T ss_pred CCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCc
Confidence 3567999999999999999999999876 4431 1111111 111110 000 001123
Q ss_pred ccccceecHHHHHHHHHH--HHHhhhcC-CCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 233 GGGGFAISYALAKALEKI--QDECLHRN-PSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 233 GGaGivLSr~ll~~L~~~--~d~C~~~~-~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
.|+++++.+.+++++... +.+.. .+ .....+|-.++.-+...|-.+.-.|.
T Consensus 172 ~G~~~~~Rr~al~~~~~~~~i~g~g-~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 172 WGHNAIIRVAAFMEHCALPVLPGRP-PFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred cceEEEEEHHHHHHhcCCccccCCC-CCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 588899999988775321 11111 11 12346788899999888866655554
No 55
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=48.26 E-value=43 Score=37.29 Aligned_cols=101 Identities=13% Similarity=-0.106 Sum_probs=59.6
Q ss_pred CCccEEEEEcCCeeeehHHHHHHHhcCCCCC-----CceEEccCCCcc----cc--------------cccccccccccc
Q 010780 179 KDVRWFVMGDDDTVFFLDNLARVLSKYDHNE-----YYYIGYPSESHL----QN--------------LAFYYGMGFGGG 235 (501)
Q Consensus 179 ~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~-----p~YIG~~se~~~----~~--------------~~f~y~~a~GGa 235 (501)
..++++++.|-|+.+.++-|..+-. ..++. +++.+....... .. ..+|.....+|.
T Consensus 157 ~~~d~vvi~DAD~~v~Pd~Lr~~~~-~~~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gt 235 (504)
T PRK14716 157 IRFAIIVLHDAEDVIHPLELRLYNY-LLPRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGV 235 (504)
T ss_pred CCcCEEEEEcCCCCcCccHHHHHHh-hcCCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCe
Confidence 4579999999999999888776533 22221 232222111100 00 001111224699
Q ss_pred cceecHHHHHHHHHHHHHhhhcC-CCCCCchHHHHHHHHhcCCCeeec
Q 010780 236 GFAISYALAKALEKIQDECLHRN-PSLYGSDERIFACMMELGVPLTKH 282 (501)
Q Consensus 236 GivLSr~ll~~L~~~~d~C~~~~-~~~~~~D~~Lg~Ci~~lGV~lt~~ 282 (501)
|+++++.+++++.....+. .+ .....+|..||.-+...|.+....
T Consensus 236 g~afRR~aLe~l~~~~GG~--~fd~~sLTED~dLglRL~~~G~rv~y~ 281 (504)
T PRK14716 236 GTAFSRRALERLAAERGGQ--PFDSDSLTEDYDIGLRLKRAGFRQIFV 281 (504)
T ss_pred eEEeEHHHHHHHHhhcCCC--CCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 9999999999985422111 01 123578999999998888765543
No 56
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=48.23 E-value=47 Score=33.81 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=59.1
Q ss_pred EEEEEcCCeeeehHHHHHHHhcCCCCCC-ceEEccCCCcc-----cc----------ccc--------------ccccc-
Q 010780 183 WFVMGDDDTVFFLDNLARVLSKYDHNEY-YYIGYPSESHL-----QN----------LAF--------------YYGMG- 231 (501)
Q Consensus 183 Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p-~YIG~~se~~~-----~~----------~~f--------------~y~~a- 231 (501)
|+++.++||++..+.|.++|+..+.... ..+|....... .. ..+ ....+
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVAS 166 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhh
Confidence 9999999999988777777765443322 22222211000 00 000 00112
Q ss_pred cccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecCC
Q 010780 232 FGGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHPG 284 (501)
Q Consensus 232 ~GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~g 284 (501)
.-|+.+++++.+++++.- +|+ ++ ..+.+|..++.=+.++|.++--.|.
T Consensus 167 ~~G~~~li~~~~~~~vG~-~de---~~-F~y~eD~D~~~R~~~~G~~i~~~p~ 214 (305)
T COG1216 167 LSGACLLIRREAFEKVGG-FDE---RF-FIYYEDVDLCLRARKAGYKIYYVPD 214 (305)
T ss_pred cceeeeEEcHHHHHHhCC-CCc---cc-ceeehHHHHHHHHHHcCCeEEEeec
Confidence 468889999999999776 332 22 2567888888777789987766655
No 57
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=48.21 E-value=32 Score=34.62 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.7
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcC
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKY 205 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~y 205 (501)
..+|++++|+|+.+...-|.++|+.+
T Consensus 83 ~gd~i~fLD~D~~~~~~wL~~ll~~l 108 (299)
T cd02510 83 TGDVLVFLDSHCEVNVGWLEPLLARI 108 (299)
T ss_pred cCCEEEEEeCCcccCccHHHHHHHHH
Confidence 46999999999999876666666554
No 58
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=48.13 E-value=20 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=22.4
Q ss_pred ccEEEEEcCCeeeehHHHHHHHhcCCC-CCCceEEcc
Q 010780 181 VRWFVMGDDDTVFFLDNLARVLSKYDH-NEYYYIGYP 216 (501)
Q Consensus 181 ~~Wfv~~DDDTy~~~~nLv~~Ls~yD~-~~p~YIG~~ 216 (501)
.+|++++|||+++..+.|.+++..++. .....+|..
T Consensus 79 ~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 79 GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 349999999999997555555554433 233444444
No 59
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=44.98 E-value=40 Score=34.96 Aligned_cols=70 Identities=14% Similarity=-0.020 Sum_probs=46.7
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEccCCCcccc--------------cccccccccccccc-eecHHHH
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGYPSESHLQN--------------LAFYYGMGFGGGGF-AISYALA 244 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~~se~~~~~--------------~~f~y~~a~GGaGi-vLSr~ll 244 (501)
..+|++++|+|.-..++.+.+++......-++..|......... ...+..+...++|+ ++++.++
T Consensus 90 ~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~ 169 (325)
T PRK10714 90 TGDLIITLDADLQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIV 169 (325)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHH
Confidence 56999999999999998888888876543345555442211100 01123345677888 8899999
Q ss_pred HHHHH
Q 010780 245 KALEK 249 (501)
Q Consensus 245 ~~L~~ 249 (501)
+++..
T Consensus 170 ~~l~~ 174 (325)
T PRK10714 170 DAMLH 174 (325)
T ss_pred HHHHH
Confidence 99854
No 60
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=44.39 E-value=1.4e+02 Score=29.11 Aligned_cols=151 Identities=11% Similarity=0.120 Sum_probs=71.8
Q ss_pred EEEEEecCCchhHhhHHHHHhhhcCCCccEEEEecCCCCCCC----C--CCCCCCeeecCCCCcccccCCCCCcchhhHH
Q 010780 94 VVFGIGASSSTWEHRRNYIRTWWRPNVTRGHVWLDKPVKNSS----I--DHLLPPIKVSGDTSKFQYKNPIGTRDAIRIS 167 (501)
Q Consensus 94 IvFgI~TS~k~~~~R~~~ik~Ww~~~~~rg~vfld~~~~~~~----~--~~~LP~v~is~dts~f~y~~~~g~~~~~r~~ 167 (501)
|.|-|.+.....+.-...++....+. ..-+|.+|....... . ....+.+.+..+. . .....|+..--..+
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~-~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r--~-~v~WG~~S~v~A~l 76 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPD-NDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKR--V-DVRWGGFSLVEATL 76 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TT-SEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS--------TTSHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCC-CEEEEEEcCCCChHHHHHHHHhcccCCceeecccc--c-ccccCCccHHHHHH
Confidence 56777776655555555666666543 344566786532111 0 1345556554321 1 11133333333345
Q ss_pred HHHHHHHHcCCCCccEEEEEcCCeeee--hHHHHHHHhcCCCCCCceEEccCCCcccccccc----c---------cccc
Q 010780 168 RIVSESFRLGLKDVRWFVMGDDDTVFF--LDNLARVLSKYDHNEYYYIGYPSESHLQNLAFY----Y---------GMGF 232 (501)
Q Consensus 168 ~mv~e~~~~~~~~~~Wfv~~DDDTy~~--~~nLv~~Ls~yD~~~p~YIG~~se~~~~~~~f~----y---------~~a~ 232 (501)
.+++++++. .++.+||+++-++.|-. .+.+.++|+..+....+.-+...+.......+. + .+..
T Consensus 77 ~ll~~al~~-~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 155 (244)
T PF02485_consen 77 NLLREALKR-DGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYK 155 (244)
T ss_dssp HHHHHHHHH--S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EE
T ss_pred HHHHHHHhc-CCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccc
Confidence 678888875 55899999999999876 488999998864433322222211111000000 0 1134
Q ss_pred ccccceecHHHHHHHHH
Q 010780 233 GGGGFAISYALAKALEK 249 (501)
Q Consensus 233 GGaGivLSr~ll~~L~~ 249 (501)
|..=++|||.+++-|..
T Consensus 156 GSqW~~Ltr~~v~~il~ 172 (244)
T PF02485_consen 156 GSQWFSLTRDFVEYILD 172 (244)
T ss_dssp E-S--EEEHHHHHHHHH
T ss_pred cceeeEeeHHHHHHhhh
Confidence 66789999999999884
No 61
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=33.44 E-value=1.8e+02 Score=33.96 Aligned_cols=102 Identities=16% Similarity=-0.002 Sum_probs=60.0
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcCCCCCCceEEc--cCCCcc-------cccc--------------ccccccccccc
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKYDHNEYYYIGY--PSESHL-------QNLA--------------FYYGMGFGGGG 236 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p~YIG~--~se~~~-------~~~~--------------f~y~~a~GGaG 236 (501)
.++-+++.|.|+.+-++.|. +++.+.......-+. +..... +... .+.....+|.|
T Consensus 155 ~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~ 233 (727)
T PRK11234 155 AFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVG 233 (727)
T ss_pred cccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCce
Confidence 45778999999999999997 444443322211110 111000 0011 12223458999
Q ss_pred ceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCeeecC
Q 010780 237 FAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLTKHP 283 (501)
Q Consensus 237 ivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt~~~ 283 (501)
+++||.+++.|.+.-+++.= ....-.+|..||.=+...|......+
T Consensus 234 ~af~Rr~l~al~~~ggg~~~-~~~~lTED~dlg~rL~~~G~~v~f~~ 279 (727)
T PRK11234 234 TCFSRRAVTALLEDGDGIAF-DVQSLTEDYDIGFRLKEKGMREIFVR 279 (727)
T ss_pred EEEecccHHHHHHhcCCCCc-CCCcchHHHHHHHHHHHCCCEEEEcc
Confidence 99999988777765433210 01245789999999998887665544
No 62
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=31.36 E-value=58 Score=32.48 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHcCCCCccEEEEEcCCeeeeh
Q 010780 163 AIRISRIVSESFRLGLKDVRWFVMGDDDTVFFL 195 (501)
Q Consensus 163 ~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~ 195 (501)
.|.-.++++++... .|+++|++.+|.|++|.-
T Consensus 60 ~W~K~~~lr~~m~~-~P~~~wv~~lD~Dali~n 91 (239)
T PF05637_consen 60 SWAKIPALRAAMKK-YPEAEWVWWLDSDALIMN 91 (239)
T ss_dssp HHTHHHHHHHHHHH--TT-SEEEEE-TTEEE--
T ss_pred hhHHHHHHHHHHHh-CCCCCEEEEEcCCeEEEe
Confidence 34445677777765 789999999999999874
No 63
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=29.35 E-value=91 Score=36.13 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=60.6
Q ss_pred HHHHHcCCCCccEEEEEcCCeeeehHHHHHHHhcCCCCCC-ceEEccCCCc-----c---------c--cccc------c
Q 010780 171 SESFRLGLKDVRWFVMGDDDTVFFLDNLARVLSKYDHNEY-YYIGYPSESH-----L---------Q--NLAF------Y 227 (501)
Q Consensus 171 ~e~~~~~~~~~~Wfv~~DDDTy~~~~nLv~~Ls~yD~~~p-~YIG~~se~~-----~---------~--~~~f------~ 227 (501)
.+..++ .+.+|+++.|.|+.+..+-|.+.+..+..+.. -.++.+.... . + ...| +
T Consensus 221 N~al~~--a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g 298 (713)
T TIGR03030 221 NNALKH--TDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDG 298 (713)
T ss_pred HHHHHh--cCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHH
Confidence 344443 34699999999999999888888887732222 2222221000 0 0 0001 0
Q ss_pred ----cccccccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHHhcCCCee
Q 010780 228 ----YGMGFGGGGFAISYALAKALEKIQDECLHRNPSLYGSDERIFACMMELGVPLT 280 (501)
Q Consensus 228 ----y~~a~GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~Lg~Ci~~lGV~lt 280 (501)
....+.|++.++.|.+++++..... ....+|..++..+.+.|-...
T Consensus 299 ~~~~~~~~~~Gs~~~iRR~al~~iGGf~~-------~~vtED~~l~~rL~~~G~~~~ 348 (713)
T TIGR03030 299 NDFWNAAFFCGSAAVLRREALDEIGGIAG-------ETVTEDAETALKLHRRGWNSA 348 (713)
T ss_pred HhhhCCeeecCceeEEEHHHHHHcCCCCC-------CCcCcHHHHHHHHHHcCCeEE
Confidence 0112468899999999988653221 134679999999988876543
No 64
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=29.23 E-value=3.1e+02 Score=28.32 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=62.7
Q ss_pred CCccceEEEEEecCCchhHhhHHHHHhhhcCC-CccEEEEecCCCCCCCCCCCCCCeeecCCCC--cccccCCCCCc--c
Q 010780 88 KTSLKHVVFGIGASSSTWEHRRNYIRTWWRPN-VTRGHVWLDKPVKNSSIDHLLPPIKVSGDTS--KFQYKNPIGTR--D 162 (501)
Q Consensus 88 ~~~l~~IvFgI~TS~k~~~~R~~~ik~Ww~~~-~~rg~vfld~~~~~~~~~~~LP~v~is~dts--~f~y~~~~g~~--~ 162 (501)
..++.-++|++..=..+|+.=.+-.+.-.-++ .-.-|||+|... .+|.+.+.+..+ -+......+|. +
T Consensus 33 n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~-------~~p~v~lg~~r~~~V~~v~~~~~W~~~s 105 (271)
T cd02515 33 NITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPA-------AVPEVELGPGRRLTVLKIAEESRWQDIS 105 (271)
T ss_pred CCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcc-------cCcccccCCCceeEEEEeccccCCcHHH
Confidence 46677788888766667766444333333333 223488988542 233332211110 00111124554 4
Q ss_pred hhhHHHHHHHHHHcCCCCccEEEEEcCCeeeeh----HHHHHHHhcCCCCCCceEEcc
Q 010780 163 AIRISRIVSESFRLGLKDVRWFVMGDDDTVFFL----DNLARVLSKYDHNEYYYIGYP 216 (501)
Q Consensus 163 ~~r~~~mv~e~~~~~~~~~~Wfv~~DDDTy~~~----~nLv~~Ls~yD~~~p~YIG~~ 216 (501)
-.|+-.+.+..-++...++|+.+++|-|+.|.- +-|-+++.. -.|.|.+.+
T Consensus 106 l~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~Lg~lva~---lHp~~y~~~ 160 (271)
T cd02515 106 MRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETLGDSVAQ---LHPWWYGKP 160 (271)
T ss_pred HHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHhhhhhee---cChhhhcCC
Confidence 445433444444444678999999999999874 444433333 234555544
No 65
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=28.18 E-value=73 Score=27.33 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=21.2
Q ss_pred CccEEEEEcCCeeeehHHHHHHHhcC
Q 010780 180 DVRWFVMGDDDTVFFLDNLARVLSKY 205 (501)
Q Consensus 180 ~~~Wfv~~DDDTy~~~~nLv~~Ls~y 205 (501)
+.+|++++|+|..+..+-|.+++..+
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~ 103 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPF 103 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHh
Confidence 68999999999999887777774443
No 66
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.10 E-value=1.7e+02 Score=29.79 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=23.3
Q ss_pred ccccceecHHHHHHHHHHHHHhhhcCCCCCCchHHH
Q 010780 233 GGGGFAISYALAKALEKIQDECLHRNPSLYGSDERI 268 (501)
Q Consensus 233 GGaGivLSr~ll~~L~~~~d~C~~~~~~~~~~D~~L 268 (501)
|=+||++|+.+++.+.+.... ......-|..+
T Consensus 156 gt~gYiis~~aAk~fl~~~~~----~~~~~pvD~~~ 187 (255)
T COG3306 156 GTAGYIISRKAAKKFLELTES----FKVVLPVDWFM 187 (255)
T ss_pred CccceeecHHHHHHHHHHhhh----cccccChhHHH
Confidence 779999999999999997644 11234556653
No 67
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=20.32 E-value=1.3e+02 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.4
Q ss_pred CCCccEEEEEcCCeeeehH----HHHHHH
Q 010780 178 LKDVRWFVMGDDDTVFFLD----NLARVL 202 (501)
Q Consensus 178 ~~~~~Wfv~~DDDTy~~~~----nLv~~L 202 (501)
..+.+|.+++|-|-|+..+ +|.++|
T Consensus 69 ~~~~dWvl~~D~DEfl~~~~~~~~l~~~L 97 (97)
T PF13704_consen 69 AFDADWVLFLDADEFLVPPPGRRSLRDFL 97 (97)
T ss_pred CCCCCEEEEEeeeEEEecCCCCCCHHHhC
Confidence 4578999999999999863 355554
Done!