Query 010782
Match_columns 501
No_of_seqs 284 out of 1630
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 6.8E-85 1.5E-89 664.9 22.3 310 26-344 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.3E-43 4.9E-48 342.2 24.2 251 24-336 44-305 (305)
3 smart00768 X8 Possibly involve 100.0 7.8E-30 1.7E-34 213.0 8.0 85 366-451 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.9 5.2E-23 1.1E-27 169.0 6.0 73 366-438 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.8 1.3E-20 2.7E-25 189.7 11.0 236 25-337 29-294 (314)
6 PF07745 Glyco_hydro_53: Glyco 99.1 1.9E-08 4.2E-13 104.0 22.4 244 40-340 26-327 (332)
7 COG3867 Arabinogalactan endo-1 98.5 2.7E-06 5.8E-11 85.4 14.9 209 39-295 64-328 (403)
8 PRK10150 beta-D-glucuronidase; 98.4 0.0001 2.2E-09 82.5 25.5 257 26-342 295-585 (604)
9 PF00150 Cellulase: Cellulase 98.3 7.3E-05 1.6E-09 74.2 19.9 206 25-271 10-251 (281)
10 smart00633 Glyco_10 Glycosyl h 97.3 0.024 5.2E-07 56.6 19.6 78 247-342 173-251 (254)
11 PF02836 Glyco_hydro_2_C: Glyc 97.0 0.046 9.9E-07 55.7 17.9 122 25-157 17-158 (298)
12 PF11790 Glyco_hydro_cc: Glyco 96.3 0.18 4E-06 50.0 15.9 190 73-338 39-232 (239)
13 PF00232 Glyco_hydro_1: Glycos 96.0 0.065 1.4E-06 58.2 11.8 116 40-160 60-224 (455)
14 TIGR03356 BGL beta-galactosida 95.3 3.2 6.9E-05 44.9 21.8 44 42-85 58-120 (427)
15 PRK10340 ebgA cryptic beta-D-g 94.4 2.1 4.6E-05 51.3 18.9 96 26-121 337-451 (1021)
16 PLN02998 beta-glucosidase 92.3 12 0.00026 41.3 19.3 43 44-86 88-149 (497)
17 cd02875 GH18_chitobiase Chitob 86.1 15 0.00033 38.7 13.7 134 50-203 54-190 (358)
18 PF03662 Glyco_hydro_79n: Glyc 84.9 5.8 0.00012 41.4 9.6 174 64-273 114-302 (319)
19 PF02449 Glyco_hydro_42: Beta- 82.6 9.8 0.00021 40.1 10.5 83 41-123 13-141 (374)
20 PRK09936 hypothetical protein; 81.9 9.5 0.00021 39.2 9.5 59 25-83 21-96 (296)
21 PRK09525 lacZ beta-D-galactosi 77.5 15 0.00032 44.4 10.8 97 25-121 352-464 (1027)
22 PF13547 GTA_TIM: GTA TIM-barr 73.7 4.7 0.0001 41.1 4.6 79 109-201 18-108 (299)
23 PF00925 GTP_cyclohydro2: GTP 70.4 5 0.00011 37.8 3.8 37 44-80 132-168 (169)
24 COG3934 Endo-beta-mannanase [C 69.3 18 0.00038 39.7 7.9 91 95-205 123-213 (587)
25 smart00481 POLIIIAc DNA polyme 64.4 24 0.00051 27.4 6.0 44 38-81 15-63 (67)
26 PF14488 DUF4434: Domain of un 60.3 1.2E+02 0.0026 28.4 11.0 78 63-145 69-151 (166)
27 cd06545 GH18_3CO4_chitinase Th 60.2 1E+02 0.0022 30.5 11.1 81 63-147 50-133 (253)
28 TIGR00505 ribA GTP cyclohydrol 57.4 16 0.00036 35.0 4.7 33 44-76 131-163 (191)
29 PRK00393 ribA GTP cyclohydrola 56.6 17 0.00037 35.1 4.7 33 44-76 134-166 (197)
30 cd02872 GH18_chitolectin_chito 55.4 50 0.0011 34.4 8.3 116 71-204 69-192 (362)
31 smart00636 Glyco_18 Glycosyl h 54.8 1.3E+02 0.0028 30.8 11.2 125 65-204 57-188 (334)
32 PRK13511 6-phospho-beta-galact 54.6 24 0.00052 38.7 5.9 78 40-121 56-162 (469)
33 cd00598 GH18_chitinase-like Th 53.8 43 0.00093 31.6 6.9 84 63-147 53-142 (210)
34 TIGR01579 MiaB-like-C MiaB-lik 50.6 2.1E+02 0.0045 30.5 12.3 145 30-206 161-331 (414)
35 cd02874 GH18_CFLE_spore_hydrol 50.2 52 0.0011 33.6 7.3 83 62-147 48-138 (313)
36 PRK12485 bifunctional 3,4-dihy 48.3 21 0.00045 38.0 4.1 34 43-77 330-363 (369)
37 COG4782 Uncharacterized protei 47.8 61 0.0013 34.5 7.3 43 251-296 142-187 (377)
38 COG4669 EscJ Type III secretor 47.7 42 0.0009 33.6 5.7 94 5-122 4-97 (246)
39 PLN02814 beta-glucosidase 47.3 44 0.00096 37.1 6.6 45 42-86 81-144 (504)
40 cd00641 GTP_cyclohydro2 GTP cy 46.6 30 0.00066 33.2 4.6 36 44-79 133-168 (193)
41 PLN00196 alpha-amylase; Provis 45.6 74 0.0016 34.5 7.9 57 26-82 29-115 (428)
42 PRK14019 bifunctional 3,4-dihy 45.3 25 0.00055 37.4 4.1 36 44-80 328-363 (367)
43 PF02055 Glyco_hydro_30: O-Gly 45.0 3.3E+02 0.0072 30.2 12.9 61 98-158 210-282 (496)
44 PLN03059 beta-galactosidase; P 44.8 2.9E+02 0.0062 32.8 12.7 115 42-158 63-223 (840)
45 PF01229 Glyco_hydro_39: Glyco 43.5 3.5E+02 0.0075 29.7 12.8 248 45-339 47-350 (486)
46 COG1433 Uncharacterized conser 41.9 55 0.0012 29.4 5.1 40 41-80 55-94 (121)
47 cd01543 PBP1_XylR Ligand-bindi 41.9 3.2E+02 0.007 26.2 11.3 129 39-187 96-237 (265)
48 PLN02849 beta-glucosidase 41.9 37 0.0008 37.6 4.9 45 42-86 83-146 (503)
49 COG0621 MiaB 2-methylthioadeni 41.8 2.4E+02 0.0053 30.8 11.0 130 25-205 195-337 (437)
50 PRK13347 coproporphyrinogen II 41.6 49 0.0011 36.0 5.8 21 128-148 262-282 (453)
51 PRK09314 bifunctional 3,4-dihy 40.3 37 0.00079 35.8 4.3 36 41-76 298-334 (339)
52 PRK09318 bifunctional 3,4-dihy 40.1 40 0.00086 36.2 4.7 38 44-81 320-357 (387)
53 PRK08815 GTP cyclohydrolase; P 39.6 40 0.00088 36.0 4.6 37 44-80 305-341 (375)
54 PLN02831 Bifunctional GTP cycl 38.9 41 0.00088 36.8 4.6 37 44-80 373-409 (450)
55 COG2730 BglC Endoglucanase [Ca 38.4 1.9E+02 0.0042 31.0 9.6 104 41-146 76-219 (407)
56 PRK09311 bifunctional 3,4-dihy 37.8 44 0.00096 36.0 4.6 37 44-80 339-375 (402)
57 PF13377 Peripla_BP_3: Peripla 37.7 2.8E+02 0.0061 24.3 9.6 117 44-183 1-129 (160)
58 cd06418 GH25_BacA-like BacA is 37.6 4E+02 0.0087 26.0 12.3 107 38-148 21-143 (212)
59 PRK09319 bifunctional 3,4-dihy 37.5 45 0.00097 37.4 4.7 38 44-81 343-380 (555)
60 TIGR03632 bact_S11 30S ribosom 37.2 83 0.0018 27.5 5.5 37 41-77 50-91 (108)
61 PF14871 GHL6: Hypothetical gl 35.8 91 0.002 28.2 5.7 44 39-82 1-67 (132)
62 PF12876 Cellulase-like: Sugar 34.7 88 0.0019 25.8 5.0 47 108-156 8-63 (88)
63 PF05990 DUF900: Alpha/beta hy 34.6 1.6E+02 0.0034 29.1 7.6 42 251-295 44-88 (233)
64 COG3534 AbfA Alpha-L-arabinofu 31.5 7.5E+02 0.016 27.4 12.7 140 40-200 51-244 (501)
65 TIGR03628 arch_S11P archaeal r 31.4 1.1E+02 0.0023 27.3 5.2 38 40-77 52-102 (114)
66 PRK06552 keto-hydroxyglutarate 30.6 4.7E+02 0.01 25.6 10.1 87 39-143 118-210 (213)
67 PF00704 Glyco_hydro_18: Glyco 30.2 2.5E+02 0.0053 28.5 8.6 119 69-204 70-196 (343)
68 COG2113 ProX ABC-type proline/ 29.9 1.4E+02 0.0029 31.0 6.5 41 44-85 51-92 (302)
69 PRK09589 celA 6-phospho-beta-g 29.2 1.1E+02 0.0024 33.6 6.1 46 41-86 70-135 (476)
70 PRK07198 hypothetical protein; 29.2 49 0.0011 35.5 3.1 38 44-81 338-376 (418)
71 TIGR01233 lacG 6-phospho-beta- 29.1 1.4E+02 0.003 32.8 6.8 46 41-86 56-120 (467)
72 PRK14328 (dimethylallyl)adenos 29.1 7E+02 0.015 26.9 12.2 61 126-205 279-339 (439)
73 PRK14334 (dimethylallyl)adenos 28.6 7.7E+02 0.017 26.6 14.6 136 38-203 167-327 (440)
74 cd02876 GH18_SI-CLP Stabilin-1 27.8 3.9E+02 0.0085 27.3 9.6 126 62-203 54-190 (318)
75 PF13547 GTA_TIM: GTA TIM-barr 27.5 91 0.002 32.1 4.6 41 255-295 205-265 (299)
76 PRK09607 rps11p 30S ribosomal 26.8 1.4E+02 0.003 27.3 5.2 38 40-77 59-109 (132)
77 COG0807 RibA GTP cyclohydrolas 26.3 1.2E+02 0.0026 29.4 5.1 40 44-83 133-172 (193)
78 CHL00041 rps11 ribosomal prote 26.2 1.6E+02 0.0036 26.0 5.5 37 41-77 63-104 (116)
79 PRK09593 arb 6-phospho-beta-gl 26.1 3.3E+02 0.0071 30.1 9.0 46 41-86 76-141 (478)
80 TIGR00538 hemN oxygen-independ 25.8 2.3E+02 0.005 30.7 7.8 22 127-148 260-281 (455)
81 COG4213 XylF ABC-type xylose t 25.8 1.4E+02 0.003 31.3 5.6 76 63-157 176-251 (341)
82 PRK09852 cryptic 6-phospho-bet 25.3 2.8E+02 0.0062 30.5 8.3 46 41-86 74-139 (474)
83 TIGR01182 eda Entner-Doudoroff 25.0 5.6E+02 0.012 25.0 9.4 68 38-123 109-182 (204)
84 PF00331 Glyco_hydro_10: Glyco 24.7 1.6E+02 0.0034 30.5 6.0 218 63-341 63-312 (320)
85 cd02873 GH18_IDGF The IDGF's ( 24.5 4.2E+02 0.0092 28.4 9.4 57 128-204 168-224 (413)
86 PF14606 Lipase_GDSL_3: GDSL-l 24.2 3.2E+02 0.007 26.1 7.5 53 241-295 79-133 (178)
87 PRK15014 6-phospho-beta-glucos 23.9 1.3E+02 0.0029 33.1 5.5 45 41-85 72-136 (477)
88 PF00411 Ribosomal_S11: Riboso 23.6 1.3E+02 0.0029 26.2 4.4 37 41-77 50-91 (110)
89 PF02811 PHP: PHP domain; Int 23.5 1.7E+02 0.0038 26.2 5.5 44 38-81 16-64 (175)
90 PF06180 CbiK: Cobalt chelatas 23.1 7.2E+02 0.016 25.2 10.2 141 36-206 56-209 (262)
91 KOG2018 Predicted dinucleotide 23.0 28 0.0006 36.4 0.0 56 98-156 133-196 (430)
92 PRK08208 coproporphyrinogen II 22.4 3.2E+02 0.0069 29.5 8.0 20 129-148 247-266 (430)
93 TIGR03820 lys_2_3_AblA lysine- 22.3 9.4E+02 0.02 26.1 11.4 31 51-82 186-225 (417)
94 PRK14330 (dimethylallyl)adenos 22.3 9.9E+02 0.021 25.7 13.8 76 111-205 250-332 (434)
95 KOG0626 Beta-glucosidase, lact 21.9 1.6E+02 0.0034 32.9 5.5 75 253-335 404-486 (524)
96 PF06117 DUF957: Enterobacteri 21.4 1.6E+02 0.0035 23.5 3.9 41 93-145 12-55 (65)
97 PRK05628 coproporphyrinogen II 21.3 3.8E+02 0.0083 28.1 8.2 20 129-148 220-239 (375)
98 PF11775 CobT_C: Cobalamin bio 21.3 57 0.0012 32.3 1.7 63 241-322 36-100 (219)
99 COG3250 LacZ Beta-galactosidas 21.2 2.8E+02 0.0061 32.8 7.6 95 26-122 303-409 (808)
100 PRK07379 coproporphyrinogen II 21.0 2.6E+02 0.0057 29.8 7.0 20 129-148 227-246 (400)
101 PF13756 Stimulus_sens_1: Stim 21.0 1.2E+02 0.0026 26.6 3.6 25 39-63 2-29 (112)
102 COG1058 CinA Predicted nucleot 20.9 2.9E+02 0.0062 28.1 6.7 31 111-148 4-36 (255)
103 PF01055 Glyco_hydro_31: Glyco 20.7 5.2E+02 0.011 27.6 9.3 131 128-314 42-178 (441)
104 PRK14327 (dimethylallyl)adenos 20.7 1.2E+03 0.026 26.0 14.6 144 30-205 235-404 (509)
105 PRK07114 keto-hydroxyglutarate 20.6 8.3E+02 0.018 24.1 9.8 70 38-123 120-194 (222)
106 PRK14332 (dimethylallyl)adenos 20.6 1.1E+03 0.024 25.6 13.8 198 29-265 176-396 (449)
107 PF02449 Glyco_hydro_42: Beta- 20.6 9.1E+02 0.02 25.2 10.9 55 128-202 208-262 (374)
108 TIGR03234 OH-pyruv-isom hydrox 20.5 2.4E+02 0.0053 27.5 6.1 51 26-77 3-57 (254)
109 TIGR01125 MiaB-like tRNA modif 20.3 8.3E+02 0.018 26.2 10.7 61 126-205 267-327 (430)
110 cd03412 CbiK_N Anaerobic cobal 20.2 4.2E+02 0.0091 23.4 7.1 46 36-81 54-109 (127)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=6.8e-85 Score=664.85 Aligned_cols=310 Identities=55% Similarity=1.005 Sum_probs=256.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecCCCCChhhhhhhhhHHHHHHhhcccc
Q 010782 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPY 105 (501)
Q Consensus 26 ~GvnYg~~~~nlps~~~Vv~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y 105 (501)
||||||+.++|+|+|.+|+++||+++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHH
Q 010782 106 YPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLL 185 (501)
Q Consensus 106 ~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l 185 (501)
+|.++|++|+||||++...... .|+|||+++|++|++.||+++|||+|++.++++..+||||+|.|++++.++|++++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l 158 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLL 158 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHH
Confidence 9999999999999999865433 89999999999999999998899999999999999999999999999999999999
Q ss_pred HHHhhcCCCceeccCCCccccCCCCccccccccccCCCceecCCCCccchhhHHHHHHHHHHHHHHcCCCCccEEEeeec
Q 010782 186 EFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETG 265 (501)
Q Consensus 186 ~fL~~~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n~fda~vDav~~a~~k~g~~~~~vvVsETG 265 (501)
+||.++++|||+|+||||.|..+|..++||||+|+++.+..|+ ++.|+||||+|+|++++||+|+|+++++|+|+|||
T Consensus 159 ~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETG 236 (310)
T PF00332_consen 159 KFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETG 236 (310)
T ss_dssp HHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE-
T ss_pred HHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccc
Confidence 9999999999999999999999999999999999998777765 88999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEecccccccCCCcccceeeeecCCCCeeeeecc
Q 010782 266 WPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKPGLESERNWGLFYPDQTSVYNLDF 344 (501)
Q Consensus 266 WPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF~~FdE~~K~g~~~E~~wGlf~~d~t~ky~l~~ 344 (501)
|||+|+ .+|+.+||++|++++++|+. +|||+||+..+++||||+|||+||+++.+|||||||++||++||+++|
T Consensus 237 WPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 237 WPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp --SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999998 47899999999999999997 699999999999999999999999998899999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-43 Score=342.16 Aligned_cols=251 Identities=24% Similarity=0.374 Sum_probs=205.0
Q ss_pred CeeeEEecCCCCC--CCCHHHHHHHHHhC-CC-CEEEEecCC----hHHHHHHHhcCCEEEEecCCCCChhhhhhhhhHH
Q 010782 24 STIGVCYGRNADD--LPTPDKVAQLVKQH-NI-KYLRIYDSN----IQVLKAFANTGVELMIGIPNSDLLPFAQFQSNAD 95 (501)
Q Consensus 24 ~~~GvnYg~~~~n--lps~~~Vv~llks~-~i-~~VRlY~~d----~~vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~ 95 (501)
+..+|+||++.++ +|+.+||..+|+.. .+ ..||+|.+| .++++|+...|++|++|||..+..+-+. +
T Consensus 44 g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~-----~ 118 (305)
T COG5309 44 GFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAV-----E 118 (305)
T ss_pred cccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhH-----H
Confidence 4689999999887 59999997766542 33 399999988 4799999999999999999876433221 2
Q ss_pred HHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCccccc
Q 010782 96 SWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNS 175 (501)
Q Consensus 96 ~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~ 175 (501)
.-+...+.++..++.|++|.||||+|++++.++++|+.+|.++|.+|+++|++ .||+|++.|.++.+ .|
T Consensus 119 ~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-np-------- 187 (305)
T COG5309 119 KTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-NP-------- 187 (305)
T ss_pred HHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC-Ch--------
Confidence 13566788888899999999999999999999999999999999999999996 67999999998875 22
Q ss_pred chhhhhhhHHHHHhhcCCCceeccCCCccccCCCCccccccccccCCCceecCCCCccchhhHHHHHHHHHHHHHHcCCC
Q 010782 176 SHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFR 255 (501)
Q Consensus 176 ~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n~fda~vDav~~a~~k~g~~ 255 (501)
.|+++.||+|+|.||||+...-.+ + .+ .++-.|+.- ++..+..
T Consensus 188 -----------~l~~~SDfia~N~~aYwd~~~~a~----------------~-----~~-~f~~~q~e~----vqsa~g~ 230 (305)
T COG5309 188 -----------ELCQASDFIAANAHAYWDGQTVAN----------------A-----AG-TFLLEQLER----VQSACGT 230 (305)
T ss_pred -----------HHhhhhhhhhcccchhccccchhh----------------h-----hh-HHHHHHHHH----HHHhcCC
Confidence 368889999999999998643211 1 11 144455543 3444445
Q ss_pred CccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEecccccccC-CC-cccceeeee
Q 010782 256 TIKIMVTETGWPSKGSPKE-KAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNENRKP-GL-ESERNWGLF 332 (501)
Q Consensus 256 ~~~vvVsETGWPS~G~~~~-~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF~~FdE~~K~-g~-~~E~~wGlf 332 (501)
+|+++|+||||||.|..+| +.||++||+.|.+++++.+++ .++++|+||+|||+||. |. ++|+|||++
T Consensus 231 ~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~ 301 (305)
T COG5309 231 KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWGVL 301 (305)
T ss_pred CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhceeee
Confidence 6999999999999999997 789999999999999998875 57899999999999996 45 899999999
Q ss_pred cCCC
Q 010782 333 YPDQ 336 (501)
Q Consensus 333 ~~d~ 336 (501)
+.|+
T Consensus 302 ~s~~ 305 (305)
T COG5309 302 SSDR 305 (305)
T ss_pred ccCC
Confidence 8764
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=7.8e-30 Score=213.03 Aligned_cols=85 Identities=51% Similarity=1.033 Sum_probs=83.0
Q ss_pred eeEEecCCCCHHHHHHHhccccCCCCCCCCccCCCCCCCCCCChhhhhhHHHHHHHHhcCCCCCCCCCCceeeEEecCCC
Q 010782 366 TWCIASTKASEADLQNALDWACGPGNVDCSAIQPSQPCYEPDTLLSHASFAINSYYQQNGATDIACSFGGNGVKVDKNPS 445 (501)
Q Consensus 366 ~wCvak~~~~~~~l~~~ld~aCg~~~~dC~~I~~gg~c~~~~t~~~~aSyafN~Yyq~~~~~~~~CdF~G~a~~t~~~ps 445 (501)
+|||+|+++++++||++||||||++ +||++|++||+||+||++++|||||||+|||++++.+++|||+|+|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 4999999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred CCccee
Q 010782 446 YDNCVY 451 (501)
Q Consensus 446 ~~~C~~ 451 (501)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999976
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.88 E-value=5.2e-23 Score=169.00 Aligned_cols=73 Identities=45% Similarity=0.916 Sum_probs=63.3
Q ss_pred eeEEecCCCCHHHHHHHhccccCCCCCCCCccCCCCC-----CCCCCChhhhhhHHHHHHHHhcCCCCCCCCCCceee
Q 010782 366 TWCIASTKASEADLQNALDWACGPGNVDCSAIQPSQP-----CYEPDTLLSHASFAINSYYQQNGATDIACSFGGNGV 438 (501)
Q Consensus 366 ~wCvak~~~~~~~l~~~ld~aCg~~~~dC~~I~~gg~-----c~~~~t~~~~aSyafN~Yyq~~~~~~~~CdF~G~a~ 438 (501)
+|||+|+++++++||++|||||+++++||++|+++|+ .|++|+.++|+|||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 5999999999999999999999998899999999999 899999999999999999999999999999999996
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.83 E-value=1.3e-20 Score=189.72 Aligned_cols=236 Identities=19% Similarity=0.341 Sum_probs=125.2
Q ss_pred eeeEEecCCCC-------CCCCHHHH----HHHHHhCCCCEEEEecCCh-----HHHHHHHhcCCEEEEecCCCCChhhh
Q 010782 25 TIGVCYGRNAD-------DLPTPDKV----AQLVKQHNIKYLRIYDSNI-----QVLKAFANTGVELMIGIPNSDLLPFA 88 (501)
Q Consensus 25 ~~GvnYg~~~~-------nlps~~~V----v~llks~~i~~VRlY~~d~-----~vl~A~a~~gi~V~vGv~n~~~~~ia 88 (501)
..||.|-|-++ |..+-.++ +++||++|++.||+|..|| .+|++|++.||+|+++|..+. .+|.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 36999998766 22222334 4688999999999999885 699999999999999999873 3454
Q ss_pred hhhhhHHHHHHh-------hccccCCCCeEEEEEeccccccCCC--CChhhHHHHHHHHHHHHHHcCCCCCeEEeeeccc
Q 010782 89 QFQSNADSWLKN-------SILPYYPAAKITYITVGAEVTESTD--NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSL 159 (501)
Q Consensus 89 ~~~~~A~~Wv~~-------~v~~y~p~~~I~~I~VGNEvl~~~~--~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~ 159 (501)
+.. -+..|-.. -|..+...+|+.++.+||||+.... ..++.+.+++|++|+.+++.+++ +|||+++.+.
T Consensus 108 r~~-P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD 185 (314)
T PF03198_consen 108 RSD-PAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAAD 185 (314)
T ss_dssp TTS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCC-CcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccC
Confidence 331 22356322 2334445689999999999998753 45899999999999999999997 5999998765
Q ss_pred ccccccCCCCCcccccchhhhhhhHHHHHhh-----cCCCceeccCCCccccCCCCccccccccccCCCceecCCCCccc
Q 010782 160 GVLSRSFPPSAGAFNSSHAHFLKPLLEFLAD-----NQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLY 234 (501)
Q Consensus 160 ~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~-----~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y 234 (501)
.. .+|. ++.+||.+ ..|++++|.| +||++. .|+. +| |
T Consensus 186 ~~----------~~r~-------~~a~Yl~Cg~~~~~iDf~g~N~Y---~WCg~S--------tf~~-SG---------y 227 (314)
T PF03198_consen 186 DA----------EIRQ-------DLANYLNCGDDDERIDFFGLNSY---EWCGDS--------TFET-SG---------Y 227 (314)
T ss_dssp -T----------TTHH-------HHHHHTTBTT-----S-EEEEE-------SS----------HHH-HS---------H
T ss_pred Ch----------hHHH-------HHHHHhcCCCcccccceeeeccc---eecCCC--------cccc-cc---------H
Confidence 31 2333 44556653 5699999999 777543 2332 22 3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEec
Q 010782 235 TNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSL 314 (501)
Q Consensus 235 ~n~fda~vDav~~a~~k~g~~~~~vvVsETGWPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF~~ 314 (501)
..+. ..++ + ..+||+.+|.||.+... ..=.+-+..|-.+ |..+++ | ..+||+
T Consensus 228 ~~l~--------~~f~--~-y~vPvffSEyGCn~~~p----R~f~ev~aly~~~-Mt~v~S--------G----GivYEy 279 (314)
T PF03198_consen 228 DRLT--------KEFS--N-YSVPVFFSEYGCNTVTP----RTFTEVPALYSPE-MTDVWS--------G----GIVYEY 279 (314)
T ss_dssp HHHH--------HHHT--T--SS-EEEEEE---SSSS-------THHHHHTSHH-HHTTEE--------E----EEES-S
T ss_pred HHHH--------HHhh--C-CCCCeEEcccCCCCCCC----ccchHhHHhhCcc-chhhee--------c----eEEEEE
Confidence 2222 2233 2 47999999999986552 1222333333332 333444 3 589999
Q ss_pred ccccccCCCcccceeeeecCCCC
Q 010782 315 FNENRKPGLESERNWGLFYPDQT 337 (501)
Q Consensus 315 FdE~~K~g~~~E~~wGlf~~d~t 337 (501)
|.| +++|||+..++.
T Consensus 280 ~~e--------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 280 FQE--------ANNYGLVEISGD 294 (314)
T ss_dssp B----------SSS--SEEE-TT
T ss_pred ecc--------CCceEEEEEcCC
Confidence 988 478999986554
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.08 E-value=1.9e-08 Score=103.98 Aligned_cols=244 Identities=16% Similarity=0.255 Sum_probs=120.3
Q ss_pred HHHHHHHHHhCCCCEEEE--ec-------CC-h---HHHHHHHhcCCEEEEecCCCCC---------h------hhhhhh
Q 010782 40 PDKVAQLVKQHNIKYLRI--YD-------SN-I---QVLKAFANTGVELMIGIPNSDL---------L------PFAQFQ 91 (501)
Q Consensus 40 ~~~Vv~llks~~i~~VRl--Y~-------~d-~---~vl~A~a~~gi~V~vGv~n~~~---------~------~ia~~~ 91 (501)
..++.++||..|++.||| |- .| . ...+.+++.||+|+|..--++. + ++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 367899999999996655 41 12 2 3445567899999999865431 0 111111
Q ss_pred hhHHHHHHhhccccC-CCCeEEEEEeccccccC------CCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccc
Q 010782 92 SNADSWLKNSILPYY-PAAKITYITVGAEVTES------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSR 164 (501)
Q Consensus 92 ~~A~~Wv~~~v~~y~-p~~~I~~I~VGNEvl~~------~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~ 164 (501)
++...+.++-+...- -+..++.|-||||+-.. .....+.+...++.-.+++++.+-+-+|-|-.+...+.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~--- 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDN--- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSH---
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCch---
Confidence 222233322222211 14678899999997553 12346777777777778888765432232322221110
Q ss_pred cCCCCCcccccchhhhhhhHHHHHhh---cCCCceeccCCCccccCCCCccccccccccCCCceecCCCCccchhhHHHH
Q 010782 165 SFPPSAGAFNSSHAHFLKPLLEFLAD---NQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQ 241 (501)
Q Consensus 165 s~pPS~g~F~~~~~~~i~~~l~fL~~---~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n~fda~ 241 (501)
..++-..+.|.. .-|.++++.||||... + +-+...
T Consensus 183 --------------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l---------------------~~l~~~ 220 (332)
T PF07745_consen 183 --------------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L---------------------EDLKNN 220 (332)
T ss_dssp --------------HHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H---------------------HHHHHH
T ss_pred --------------HHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H---------------------HHHHHH
Confidence 011111222222 2399999999999741 1 112223
Q ss_pred HHHHHHHHHHcCCCCccEEEeeeccCCCCCC-----C---------CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 010782 242 IDSIYFALMALNFRTIKIMVTETGWPSKGSP-----K---------EKAATPDNAQIYNTNLIRHVINDSGTPAKRGEEL 307 (501)
Q Consensus 242 vDav~~a~~k~g~~~~~vvVsETGWPS~G~~-----~---------~~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i 307 (501)
++.+. ++ .+|+|+|.|||||..-+. + +-.+|++.|+.|++++++.+.+-.+ +..+
T Consensus 221 l~~l~---~r---y~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~ 289 (332)
T PF07745_consen 221 LNDLA---SR---YGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGL 289 (332)
T ss_dssp HHHHH---HH---HT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEE
T ss_pred HHHHH---HH---hCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeE
Confidence 33221 23 268999999999997111 1 1135899999999999998876211 2345
Q ss_pred cEEEEecc-ccc-----ccCCCcccceeeeecCCCCeee
Q 010782 308 DVYIFSLF-NEN-----RKPGLESERNWGLFYPDQTSVY 340 (501)
Q Consensus 308 ~~yiF~~F-dE~-----~K~g~~~E~~wGlf~~d~t~ky 340 (501)
-+|+-|-- -.. |..|...|+. +||+.+|++--
T Consensus 290 GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~ 327 (332)
T PF07745_consen 290 GVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALP 327 (332)
T ss_dssp EEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-G
T ss_pred EEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCch
Confidence 56665421 111 1122233333 78888777643
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=2.7e-06 Score=85.41 Aligned_cols=209 Identities=20% Similarity=0.324 Sum_probs=114.8
Q ss_pred CHHHHHHHHHhCCCCEEEE--e----cCCh--------------HHHHHHHhcCCEEEEecCCCCChhhhhhhhhHHHHH
Q 010782 39 TPDKVAQLVKQHNIKYLRI--Y----DSNI--------------QVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWL 98 (501)
Q Consensus 39 s~~~Vv~llks~~i~~VRl--Y----~~d~--------------~vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~~Wv 98 (501)
-.+++.+.||..|++.||| | |.|. ++-+.+++.||||++..--++.=+--..+..-.+|.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~ 143 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE 143 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh
Confidence 4677889999999996665 4 4431 233445678999999987654211001112223452
Q ss_pred H-------hhccccC---------CCCeEEEEEeccccccC-----CCC-ChhhHHHHHHHHHHHHHHcCCCCCeEEeee
Q 010782 99 K-------NSILPYY---------PAAKITYITVGAEVTES-----TDN-SSSLVVPAMQNVFTALKKAGLHKRIKVSST 156 (501)
Q Consensus 99 ~-------~~v~~y~---------p~~~I~~I~VGNEvl~~-----~~~-~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~ 156 (501)
. +.|-.|. .+..+.-+-||||.-.. ++. ....+-..++.--++++... ..|||---
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH 221 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH 221 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE
Confidence 2 2222221 14567889999997542 121 23444444454455555533 34666432
Q ss_pred cccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCccccCCCCccccccccccCCCceecCCCCccchh
Q 010782 157 HSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTN 236 (501)
Q Consensus 157 ~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n 236 (501)
+.+.-. .+.||-=...+-+.-++| |.|++--||||...- + .|+ +|
T Consensus 222 -----la~g~~--n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl-------~---------------nL~-~n 266 (403)
T COG3867 222 -----LAEGEN--NSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTL-------N---------------NLT-TN 266 (403)
T ss_pred -----ecCCCC--CchhhHHHHHHHHcCCCc-----eEEeeeccccccCcH-------H---------------HHH-hH
Confidence 222222 234432112222222222 889999999998621 0 011 12
Q ss_pred hHHHHHHHHHHHHHHcCCCCccEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 010782 237 MFDAQIDSIYFALMALNFRTIKIMVTETGW--------------PSKGSPKEKAATPDNAQIYNTNLIRHVIN 295 (501)
Q Consensus 237 ~fda~vDav~~a~~k~g~~~~~vvVsETGW--------------PS~G~~~~~~as~~na~~y~~~lv~~~~s 295 (501)
| +.+ .. -.+|.|+|.||+. |+.+..-+-..+++.|++|.+++|+.+.+
T Consensus 267 l-~di--------a~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n 328 (403)
T COG3867 267 L-NDI--------AS--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN 328 (403)
T ss_pred H-HHH--------HH--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh
Confidence 2 221 11 1478999999998 44442212236789999999999999875
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.38 E-value=0.0001 Score=82.48 Aligned_cols=257 Identities=10% Similarity=0.066 Sum_probs=142.0
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCCCEEEEe--cCChHHHHHHHhcCCEEEEecCCCC--------------
Q 010782 26 IGVCYGRNA---DDLPTPDKV---AQLVKQHNIKYLRIY--DSNIQVLKAFANTGVELMIGIPNSD-------------- 83 (501)
Q Consensus 26 ~GvnYg~~~---~nlps~~~V---v~llks~~i~~VRlY--~~d~~vl~A~a~~gi~V~vGv~n~~-------------- 83 (501)
.|+|+=... ..-++.+.. ++++|+.|+|.||+- -.++..+.++-..||.|+.-++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 477763221 112454544 557899999999993 2357899999999999997664310
Q ss_pred -Chhhh------hhhhhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeee
Q 010782 84 -LLPFA------QFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSST 156 (501)
Q Consensus 84 -~~~ia------~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~ 156 (501)
.+... +.......-+++.|.++.....|..-.+|||.-... +.....++.+.+.+++..- .=+|+++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~Dp--tR~vt~~ 448 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDP--TRPVTCV 448 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCC--CCceEEE
Confidence 00000 011112222455666655445688999999964321 2233445555555655443 2346665
Q ss_pred cccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCccccCCCCccccccccccCCCceecCCCCccchh
Q 010782 157 HSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTN 236 (501)
Q Consensus 157 ~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n 236 (501)
..+.. +|. .+ -+....|+++.|.|+=|- .+.... + ....
T Consensus 449 ~~~~~-----~~~----~~-----------~~~~~~Dv~~~N~Y~~wy--~~~~~~----~---------------~~~~ 487 (604)
T PRK10150 449 NVMFA-----TPD----TD-----------TVSDLVDVLCLNRYYGWY--VDSGDL----E---------------TAEK 487 (604)
T ss_pred ecccC-----Ccc----cc-----------cccCcccEEEEcccceec--CCCCCH----H---------------HHHH
Confidence 42210 110 00 012345999999985221 111100 0 0011
Q ss_pred hHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCC--C-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEe
Q 010782 237 MFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPK--E-KAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFS 313 (501)
Q Consensus 237 ~fda~vDav~~a~~k~g~~~~~vvVsETGWPS~G~~~--~-~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF~ 313 (501)
.++..++ ...+ .+ ++|++++|+|+.+.-+.. + ..-+.+.|..|++...+.+.+ +|. -+-.|+..
T Consensus 488 ~~~~~~~----~~~~-~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~ 554 (604)
T PRK10150 488 VLEKELL----AWQE-KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWN 554 (604)
T ss_pred HHHHHHH----HHHH-hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEe
Confidence 2222222 1111 12 899999999976632111 1 124688888888877765543 232 34579999
Q ss_pred cccccccCCC--cccceeeeecCCCCeeeee
Q 010782 314 LFNENRKPGL--ESERNWGLFYPDQTSVYNL 342 (501)
Q Consensus 314 ~FdE~~K~g~--~~E~~wGlf~~d~t~ky~l 342 (501)
+||-....|. ....+.||++.||+||-..
T Consensus 555 ~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 555 FADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred eeccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 9995544332 1235889999999998654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.31 E-value=7.3e-05 Score=74.19 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=116.1
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------C-------hHHHHHHHhcCCEEEEecCCCC-
Q 010782 25 TIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDS-------------N-------IQVLKAFANTGVELMIGIPNSD- 83 (501)
Q Consensus 25 ~~GvnYg~~~~nlps~~~Vv~llks~~i~~VRlY~~-------------d-------~~vl~A~a~~gi~V~vGv~n~~- 83 (501)
..|+|-. ..+.. ..++.++.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3566655 22111 7788899999999999999721 1 1588888999999999987640
Q ss_pred ---ChhhhhhhhhHHHHHHh---hc-cccCCCCeEEEEEeccccccCCCC------ChhhHHHHHHHHHHHHHHcCCCCC
Q 010782 84 ---LLPFAQFQSNADSWLKN---SI-LPYYPAAKITYITVGAEVTESTDN------SSSLVVPAMQNVFTALKKAGLHKR 150 (501)
Q Consensus 84 ---~~~ia~~~~~A~~Wv~~---~v-~~y~p~~~I~~I~VGNEvl~~~~~------~~~~Lv~am~~vk~aL~~~gl~~~ 150 (501)
............+|+++ .+ .+|-....|.++=+.||+...... ....+.+.++.+.+++++.+-...
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 00111111122233222 22 333234568899999999876432 236788999999999999987643
Q ss_pred eEEeeecccccccccCCCCCcccccchhhhh--hhHHHHHhhcCCCceeccCCCccccCCCCccccccccccCCCceecC
Q 010782 151 IKVSSTHSLGVLSRSFPPSAGAFNSSHAHFL--KPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDP 228 (501)
Q Consensus 151 IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i--~~~l~fL~~~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~ 228 (501)
|-|+... |.. +..... .|. .....+.+.+|.|+.+....... .
T Consensus 168 i~~~~~~----~~~-----------~~~~~~~~~P~---~~~~~~~~~~H~Y~~~~~~~~~~------------~----- 212 (281)
T PF00150_consen 168 IIVGGGG----WGA-----------DPDGAAADNPN---DADNNDVYSFHFYDPYDFSDQWN------------P----- 212 (281)
T ss_dssp EEEEEHH----HHT-----------BHHHHHHHSTT---TTTTSEEEEEEEETTTCHHTTTS------------T-----
T ss_pred eecCCCc----ccc-----------ccchhhhcCcc---cccCceeEEeeEeCCCCcCCccc------------c-----
Confidence 4343321 111 100000 110 12345677788886554322110 0
Q ss_pred CCCccchhhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCC
Q 010782 229 NTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGS 271 (501)
Q Consensus 229 ~~~~~Y~n~fda~vDav~~a~~k~g~~~~~vvVsETGWPS~G~ 271 (501)
......+.....++.....+.+ .++||+|+|.|+++.++
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~---~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 213 -GNWGDASALESSFRAALNWAKK---NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEEEESSTTTS
T ss_pred -ccchhhhHHHHHHHHHHHHHHH---cCCeEEEeCcCCcCCCC
Confidence 0011122334445544445555 46799999999996543
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.35 E-value=0.024 Score=56.63 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred HHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEecccc-cccCCCcc
Q 010782 247 FALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNE-NRKPGLES 325 (501)
Q Consensus 247 ~a~~k~g~~~~~vvVsETGWPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF~~FdE-~~K~g~~~ 325 (501)
+.|++++-.++||.|||.+-|..+ +++.|+.+++++++.+.+. |. ...+++..+.|. .|.++
T Consensus 173 ~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~--- 235 (254)
T smart00633 173 AALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---PA----VTGVTVWGVTDKYSWLDG--- 235 (254)
T ss_pred HHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---CC----eeEEEEeCCccCCcccCC---
Confidence 344444445899999999988643 3478889999999988763 21 233556666654 35543
Q ss_pred cceeeeecCCCCeeeee
Q 010782 326 ERNWGLFYPDQTSVYNL 342 (501)
Q Consensus 326 E~~wGlf~~d~t~ky~l 342 (501)
.+-|||+.|+++|-.+
T Consensus 236 -~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 -GAPLLFDANYQPKPAY 251 (254)
T ss_pred -CCceeECCCCCCChhh
Confidence 4679999999887543
No 11
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.00 E-value=0.046 Score=55.69 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=67.5
Q ss_pred eeeEEecCCCCC---CCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhcCCEEEEecCCCCC---hh------h
Q 010782 25 TIGVCYGRNADD---LPTPDKV---AQLVKQHNIKYLRIYD--SNIQVLKAFANTGVELMIGIPNSDL---LP------F 87 (501)
Q Consensus 25 ~~GvnYg~~~~n---lps~~~V---v~llks~~i~~VRlY~--~d~~vl~A~a~~gi~V~vGv~n~~~---~~------i 87 (501)
..|||+...... .++.+++ ++++|+.|++.||+.. .++..+.++...||-|+..++.... .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998875433 2455655 4568899999999964 3578999999999999988876110 00 0
Q ss_pred hhhh---hhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeec
Q 010782 88 AQFQ---SNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTH 157 (501)
Q Consensus 88 a~~~---~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~ 157 (501)
..++ +.....+++.|.++.....|..=.+|||. .....++.+...+++.-=++ +|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptR--pv~~~~ 158 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTR--PVTYAS 158 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTS--EEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCC--ceeecc
Confidence 1111 22233455556555433458888999998 23344555555555444332 465543
No 12
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.27 E-value=0.18 Score=50.03 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=103.7
Q ss_pred CEEEEecCCCCChhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccCC--CCChhhHHHHHHHHHHHHHHcCCCCC
Q 010782 73 VELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTEST--DNSSSLVVPAMQNVFTALKKAGLHKR 150 (501)
Q Consensus 73 i~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~--~~~~~~Lv~am~~vk~aL~~~gl~~~ 150 (501)
++-+-.+|.....+ ..|++ +|... ...++.|..=||+=... ..++++.+...++..+.|+. ..
T Consensus 39 ~efvPmlwg~~~~~--------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~ 103 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD--------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PG 103 (239)
T ss_pred eeEeecccCCCCCc--------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CC
Confidence 67777778765322 11221 22221 24678899999975543 35677777777776666663 24
Q ss_pred eEEeeecccccccccCCCCCcccccchhhhhhhHHHHHh--hcCCCceeccCCCccccCCCCccccccccccCCCceecC
Q 010782 151 IKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLA--DNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDP 228 (501)
Q Consensus 151 IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~--~~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~ 228 (501)
+|+..|.....-.. +|+. .+.+...++-.. +..|++.||.| . .+.
T Consensus 104 ~~l~sPa~~~~~~~--~~~g-------~~Wl~~F~~~~~~~~~~D~iavH~Y---~--~~~------------------- 150 (239)
T PF11790_consen 104 VKLGSPAVAFTNGG--TPGG-------LDWLSQFLSACARGCRVDFIAVHWY---G--GDA------------------- 150 (239)
T ss_pred cEEECCeecccCCC--CCCc-------cHHHHHHHHhcccCCCccEEEEecC---C--cCH-------------------
Confidence 77777653211000 1111 123333322211 35677777777 1 000
Q ss_pred CCCccchhhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCccc
Q 010782 229 NTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELD 308 (501)
Q Consensus 229 ~~~~~Y~n~fda~vDav~~a~~k~g~~~~~vvVsETGWPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~ 308 (501)
.-|...|+.++ ++. ++||+|||.|+...+ ...+.+.++.|.+..+..+.+. |. --.
T Consensus 151 -------~~~~~~i~~~~---~~~---~kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~-Ver 206 (239)
T PF11790_consen 151 -------DDFKDYIDDLH---NRY---GKPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY-VER 206 (239)
T ss_pred -------HHHHHHHHHHH---HHh---CCCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeE
Confidence 01223344332 332 389999999987622 2478899999999999988652 22 234
Q ss_pred EEEEecccccccCCCcccceeeeecCCCCe
Q 010782 309 VYIFSLFNENRKPGLESERNWGLFYPDQTS 338 (501)
Q Consensus 309 ~yiF~~FdE~~K~g~~~E~~wGlf~~d~t~ 338 (501)
+++|. |...+. ....+-.|++.+|++
T Consensus 207 yawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 207 YAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred EEecc-cccccC---CCccccccccCCCCc
Confidence 66665 222222 334566677777643
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=95.96 E-value=0.065 Score=58.22 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCCCEEEEe--------c-----CC-------hHHHHHHHhcCCEEEEecCCCCChhhhhh------hhh
Q 010782 40 PDKVAQLVKQHNIKYLRIY--------D-----SN-------IQVLKAFANTGVELMIGIPNSDLLPFAQF------QSN 93 (501)
Q Consensus 40 ~~~Vv~llks~~i~~VRlY--------~-----~d-------~~vl~A~a~~gi~V~vGv~n~~~~~ia~~------~~~ 93 (501)
-+|=+++||+.|++..|+= + .| .+++..|...||+.+|.+.--+++..-.+ +..
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 3445789999999999874 1 12 16899999999999999986655432111 111
Q ss_pred HHHHHHh----hccccCCCCeEEEEEeccccccC-------C---C--CC-------hhhHHHHHHHHHHHHHHcCCCCC
Q 010782 94 ADSWLKN----SILPYYPAAKITYITVGAEVTES-------T---D--NS-------SSLVVPAMQNVFTALKKAGLHKR 150 (501)
Q Consensus 94 A~~Wv~~----~v~~y~p~~~I~~I~VGNEvl~~-------~---~--~~-------~~~Lv~am~~vk~aL~~~gl~~~ 150 (501)
. .|..+ -+..| .+.|+.-+.=||...- + + .. .-.++-|-..+.+++++.+- +
T Consensus 140 ~-~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~ 214 (455)
T PF00232_consen 140 V-DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--D 214 (455)
T ss_dssp H-HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--T
T ss_pred H-HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--c
Confidence 1 11111 11222 3567788888997641 1 1 11 12244444455566666663 3
Q ss_pred eEEeeecccc
Q 010782 151 IKVSSTHSLG 160 (501)
Q Consensus 151 IkVsT~~~~~ 160 (501)
.+|+..++..
T Consensus 215 ~~IGi~~~~~ 224 (455)
T PF00232_consen 215 GKIGIALNFS 224 (455)
T ss_dssp SEEEEEEEEE
T ss_pred eEEecccccc
Confidence 5666666544
No 14
>TIGR03356 BGL beta-galactosidase.
Probab=95.32 E-value=3.2 Score=44.88 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCCEEEEe--------c----CC-------hHHHHHHHhcCCEEEEecCCCCCh
Q 010782 42 KVAQLVKQHNIKYLRIY--------D----SN-------IQVLKAFANTGVELMIGIPNSDLL 85 (501)
Q Consensus 42 ~Vv~llks~~i~~VRlY--------~----~d-------~~vl~A~a~~gi~V~vGv~n~~~~ 85 (501)
+=+++|++.|++++|+= + .| .+++..+.+.||+++|.+.--+++
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P 120 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP 120 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc
Confidence 33778999999999862 0 12 268899999999999999544433
No 15
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.39 E-value=2.1 Score=51.26 Aligned_cols=96 Identities=20% Similarity=0.135 Sum_probs=58.5
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhcCCEEEEecCCCCC--------hhhhh
Q 010782 26 IGVCYGRNAD---DLPTPDKV---AQLVKQHNIKYLRIYD--SNIQVLKAFANTGVELMIGIPNSDL--------LPFAQ 89 (501)
Q Consensus 26 ~GvnYg~~~~---nlps~~~V---v~llks~~i~~VRlY~--~d~~vl~A~a~~gi~V~vGv~n~~~--------~~ia~ 89 (501)
.|+|+-.... ...+++++ ++++|+.|+|.||+-- .++..+.++-..||.|+.-++.+.. ..+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 5888654321 12455555 5578899999999853 2367899999999999986532210 01111
Q ss_pred hh---hhHHHHHHhhccccCCCCeEEEEEeccccc
Q 010782 90 FQ---SNADSWLKNSILPYYPAAKITYITVGAEVT 121 (501)
Q Consensus 90 ~~---~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl 121 (501)
++ .+..+-+++.|.++.....|..-++|||.-
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 111223455565554445688889999974
No 16
>PLN02998 beta-glucosidase
Probab=92.29 E-value=12 Score=41.34 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=33.2
Q ss_pred HHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhcCCEEEEecCCCCChh
Q 010782 44 AQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (501)
Q Consensus 44 v~llks~~i~~VRl-------Y~-----~d~-------~vl~A~a~~gi~V~vGv~n~~~~~ 86 (501)
++++|+.|++.-|+ += .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 88 i~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 88 VKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred HHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 78899999887775 21 232 699999999999999998766653
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=86.11 E-value=15 Score=38.65 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=76.1
Q ss_pred CCCCEEEEec-CChHHHHHHHhcCCEEEEecCCCCChhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccC-CCCC
Q 010782 50 HNIKYLRIYD-SNIQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTES-TDNS 127 (501)
Q Consensus 50 ~~i~~VRlY~-~d~~vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~-~~~~ 127 (501)
..+++|-+|+ .|++++..+.+.|++|++..-.. .+.+ +++..-+.+++..| .+...-...+|-+==|-... ....
T Consensus 54 ~~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d 130 (358)
T cd02875 54 SKVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPE 130 (358)
T ss_pred ccceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcch
Confidence 3578888885 47899999999999999864322 1222 34333344544332 22211234455554453322 1223
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccc-cchhhhhhhHHHHHhhcCCCceeccCCCc
Q 010782 128 SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFN-SSHAHFLKPLLEFLADNQSPFMIDIYPYY 203 (501)
Q Consensus 128 ~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~-~~~~~~i~~~l~fL~~~~d~~~vNiYPyf 203 (501)
.+.+...|+++|++|++.+..-. ++.+..+. |+....+ -|+ .-|++..|++.|-.|=|.
T Consensus 131 ~~~~t~llkelr~~l~~~~~~~~--Lsvav~~~-------p~~~~~~~yd~--------~~l~~~vD~v~lMtYD~h 190 (358)
T cd02875 131 YYALTELVKETTKAFKKENPGYQ--ISFDVAWS-------PSCIDKRCYDY--------TGIADASDFLVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcE--EEEEEecC-------cccccccccCH--------HHHHhhCCEeeEEeeccc
Confidence 46788999999999998764322 44333221 1111111 121 236777899999999654
No 18
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=84.93 E-value=5.8 Score=41.35 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=69.6
Q ss_pred HHHHHHhcCCEEEEecCCCCChhhhhhhhhHHHHHHhhccccCC-----CCeEEEEEeccccccCC---CCChhhHHHHH
Q 010782 64 VLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYP-----AAKITYITVGAEVTEST---DNSSSLVVPAM 135 (501)
Q Consensus 64 vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p-----~~~I~~I~VGNEvl~~~---~~~~~~Lv~am 135 (501)
+-+-+.++|.+|+.|+---.-..........-.|--+|-..++. .-+|.+-=.|||.-..+ ...+.++....
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 33445679999999986422111111223346787777554432 23577888999965432 34577888888
Q ss_pred HHHHHHHHHc---CCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhh-cCCCceeccCCCccccCCCCc
Q 010782 136 QNVFTALKKA---GLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLAD-NQSPFMIDIYPYYAYRDSPNN 211 (501)
Q Consensus 136 ~~vk~aL~~~---gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~-~~d~~~vNiYPyf~~~~~~~~ 211 (501)
..+|+.|++. .+. .-+|.-|.. .|.. +.+++.|+-.-. ..|.+.-|+|+ +....++.
T Consensus 194 ~~Lr~il~~iy~~~~~-~P~v~gP~~-------------~~d~---~w~~~FL~~~g~~~vD~vT~H~Y~-lg~g~d~~- 254 (319)
T PF03662_consen 194 IQLRKILNEIYKNALP-GPLVVGPGG-------------FFDA---DWLKEFLKASGPGVVDAVTWHHYN-LGSGRDPA- 254 (319)
T ss_dssp ---HHHHHHHHHH-TT----EEEEEE-------------SS-G---GGHHHHHHHTTTT--SEEEEEEEE-E--TT-TT-
T ss_pred HHHHHHHHHHHhcCCC-CCeEECCCC-------------CCCH---HHHHHHHHhcCCCccCEEEEEecC-CCCCchHH-
Confidence 8888877653 111 123444432 1222 234443333333 36888888884 33222221
Q ss_pred cccccccccCCCceecCCCCccchhhHHHHHHH---HHHHHHHcCCCCccEEEeeeccCCCCCCC
Q 010782 212 VSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDS---IYFALMALNFRTIKIMVTETGWPSKGSPK 273 (501)
Q Consensus 212 i~ld~AlF~~~~g~~d~~~~~~Y~n~fda~vDa---v~~a~~k~g~~~~~vvVsETGWPS~G~~~ 273 (501)
. ++. + .++ .++|...+. +...+++.+ ++++++|+|||=...|+..
T Consensus 255 l-~~~-~-------l~p-------~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG~~ 302 (319)
T PF03662_consen 255 L-IED-F-------LNP-------SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGGAP 302 (319)
T ss_dssp --HHH-H-------TS---------HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT--T
T ss_pred H-HHH-h-------cCh-------hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCCCC
Confidence 1 111 1 121 234433332 222222222 6799999999966656544
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=82.58 E-value=9.8 Score=40.10 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCCEEEEecC-------C---------hHHHHHHHhcCCEEEEecCCCCChh------------------
Q 010782 41 DKVAQLVKQHNIKYLRIYDS-------N---------IQVLKAFANTGVELMIGIPNSDLLP------------------ 86 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRlY~~-------d---------~~vl~A~a~~gi~V~vGv~n~~~~~------------------ 86 (501)
++-++++|+.|++.|||-.. . ..+|..+++.||+|+|+++....+.
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 34467788899999998432 1 2588889999999999997432110
Q ss_pred ----------hh--hhhhhHHHHHHhhccccCCCCeEEEEEeccccccC
Q 010782 87 ----------FA--QFQSNADSWLKNSILPYYPAAKITYITVGAEVTES 123 (501)
Q Consensus 87 ----------ia--~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~ 123 (501)
+. .-...+.+.+++.+..|-....|.++-|+||.-..
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 00 00123445555555566555679999999997653
No 20
>PRK09936 hypothetical protein; Provisional
Probab=81.95 E-value=9.5 Score=39.15 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=42.4
Q ss_pred eeeEEecCCCCCC-CCHHHHH---HHHHhCCCCEEEEe-----cCC--------hHHHHHHHhcCCEEEEecCCCC
Q 010782 25 TIGVCYGRNADDL-PTPDKVA---QLVKQHNIKYLRIY-----DSN--------IQVLKAFANTGVELMIGIPNSD 83 (501)
Q Consensus 25 ~~GvnYg~~~~nl-ps~~~Vv---~llks~~i~~VRlY-----~~d--------~~vl~A~a~~gi~V~vGv~n~~ 83 (501)
.-|+=|-|...+. -++++=- +.++..|++.+=+= +.| ...|.++.+.||+|.||++-|.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 4577799998773 5666554 45567898766542 223 3688888899999999999874
No 21
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=77.52 E-value=15 Score=44.36 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=60.3
Q ss_pred eeeEEecCCCC---CCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhcCCEEEEecCCCCC-----hhhhhhh
Q 010782 25 TIGVCYGRNAD---DLPTPDKV---AQLVKQHNIKYLRIYD--SNIQVLKAFANTGVELMIGIPNSDL-----LPFAQFQ 91 (501)
Q Consensus 25 ~~GvnYg~~~~---nlps~~~V---v~llks~~i~~VRlY~--~d~~vl~A~a~~gi~V~vGv~n~~~-----~~ia~~~ 91 (501)
..|+|+-.... .-.+++++ ++++|+.|+|.||+-. .++..+.++-..||.|+--++.+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35888754322 22566665 4577899999999943 3478999999999999988654211 0111111
Q ss_pred ---hhHHHHHHhhccccCCCCeEEEEEeccccc
Q 010782 92 ---SNADSWLKNSILPYYPAAKITYITVGAEVT 121 (501)
Q Consensus 92 ---~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl 121 (501)
.+..+-+++.|.+......|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 112222445555544445688999999963
No 22
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=73.72 E-value=4.7 Score=41.12 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=54.2
Q ss_pred CeEEEEEecccccc--C--CC----CChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCc----ccccc
Q 010782 109 AKITYITVGAEVTE--S--TD----NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAG----AFNSS 176 (501)
Q Consensus 109 ~~I~~I~VGNEvl~--~--~~----~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g----~F~~~ 176 (501)
..|.+++||.|-.- + .. -.++.|+..+.+||+.| | ..+|||++..|+.+.. +.|..| .|+
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~-- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFH-- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCccccc--
Confidence 56899999999532 2 11 12467888888888887 2 3589999999998864 555444 444
Q ss_pred hhhhhhhHHHHHhhcCCCceeccCC
Q 010782 177 HAHFLKPLLEFLADNQSPFMIDIYP 201 (501)
Q Consensus 177 ~~~~i~~~l~fL~~~~d~~~vNiYP 201 (501)
|.|+. -..+.|+++|+.|.
T Consensus 90 ----LDpLW--a~~~IDfIGID~Y~ 108 (299)
T PF13547_consen 90 ----LDPLW--ADPNIDFIGIDNYF 108 (299)
T ss_pred ----Ccccc--cCCcCCEEEeeccc
Confidence 22332 24578999999993
No 23
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=70.43 E-value=5 Score=37.78 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=27.1
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~ 80 (501)
+++|+.+|+++||+.+.+|.-+.+|.+.||+|.=-+|
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 7899999999999999999999999999999975443
No 24
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=69.31 E-value=18 Score=39.70 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=60.2
Q ss_pred HHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccc
Q 010782 95 DSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFN 174 (501)
Q Consensus 95 ~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~ 174 (501)
...|...|.+|--...|.+-..-||.+...+.+...++...+.+.++++..+-+.- |+.-+....|..--|| .+.
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hl--vsvGD~~sp~~~~~py-N~r-- 197 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHL--VSVGDPASPWPQYAPY-NAR-- 197 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCe--eecCCcCCcccccCCc-ccc--
Confidence 34566666666555567777788998887778889999999999999987765433 4444433333321122 111
Q ss_pred cchhhhhhhHHHHHhhcCCCceeccCCCccc
Q 010782 175 SSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (501)
Q Consensus 175 ~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~ 205 (501)
.+.|+-.-|+||+|..
T Consensus 198 ---------------~~vDya~~hLY~hyd~ 213 (587)
T COG3934 198 ---------------FYVDYAANHLYRHYDT 213 (587)
T ss_pred ---------------eeeccccchhhhhccC
Confidence 2568888899997653
No 25
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=64.41 E-value=24 Score=27.40 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHHhcCCEEEEecCC
Q 010782 38 PTPDKVAQLVKQHNIKYLRIYDSN-----IQVLKAFANTGVELMIGIPN 81 (501)
Q Consensus 38 ps~~~Vv~llks~~i~~VRlY~~d-----~~vl~A~a~~gi~V~vGv~n 81 (501)
-+++++++..+++|++.|=+=|-+ +...+.+++.||+|+.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 468999999999999999887766 45666677899999999853
No 26
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=60.34 E-value=1.2e+02 Score=28.41 Aligned_cols=78 Identities=10% Similarity=0.035 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCEEEEecCCCCC----hhhhhhhhhHHHHHHhhc-cccCCCCeEEEEEeccccccCCCCChhhHHHHHHH
Q 010782 63 QVLKAFANTGVELMIGIPNSDL----LPFAQFQSNADSWLKNSI-LPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQN 137 (501)
Q Consensus 63 ~vl~A~a~~gi~V~vGv~n~~~----~~ia~~~~~A~~Wv~~~v-~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~ 137 (501)
.+|+++.+.||+|++|++.+.. ...+.....+.. |.+.+ ..|.....+.+--+-.|+=... ....++.+.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~-v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ-VADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH-HHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 5888999999999999996521 111111011111 22222 2332223566666667764332 334566666
Q ss_pred HHHHHHHc
Q 010782 138 VFTALKKA 145 (501)
Q Consensus 138 vk~aL~~~ 145 (501)
+.+.|++.
T Consensus 144 l~~~lk~~ 151 (166)
T PF14488_consen 144 LGKYLKQI 151 (166)
T ss_pred HHHHHHHh
Confidence 66666654
No 27
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=60.21 E-value=1e+02 Score=30.46 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCEEEEecCCCCC---hhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHH
Q 010782 63 QVLKAFANTGVELMIGIPNSDL---LPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVF 139 (501)
Q Consensus 63 ~vl~A~a~~gi~V~vGv~n~~~---~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk 139 (501)
..+++++..|+||++.|..... ..+.+++...+.++++ +..+...-.+.+|-+==|-.... .+.....++++|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHH
Confidence 4566777789999988865432 2233444433444333 22222111244444444533211 456778899999
Q ss_pred HHHHHcCC
Q 010782 140 TALKKAGL 147 (501)
Q Consensus 140 ~aL~~~gl 147 (501)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987664
No 28
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=57.43 E-value=16 Score=35.03 Aligned_cols=33 Identities=15% Similarity=0.457 Sum_probs=30.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEE
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELM 76 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~ 76 (501)
+|+|+.+|+++||+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999888889999999987
No 29
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.65 E-value=17 Score=35.11 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=30.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEE
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELM 76 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~ 76 (501)
+|+|+.+||+++|+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999999888889999999997
No 30
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=55.40 E-value=50 Score=34.44 Aligned_cols=116 Identities=10% Similarity=0.177 Sum_probs=57.2
Q ss_pred cCCEEEEecC--CCC---ChhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccC---CCCChhhHHHHHHHHHHHH
Q 010782 71 TGVELMIGIP--NSD---LLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTES---TDNSSSLVVPAMQNVFTAL 142 (501)
Q Consensus 71 ~gi~V~vGv~--n~~---~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~---~~~~~~~Lv~am~~vk~aL 142 (501)
.++||++.|- ... ...+++++...+.+++. +..+...-.+.+|-+==|-... .+...+.++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899998774 221 23344444333334332 2222211123444443343221 1123467899999999999
Q ss_pred HHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCcc
Q 010782 143 KKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (501)
Q Consensus 143 ~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~ 204 (501)
++.+- ...++.+..... ..+...+ + +.-|.+..|++.+-.|-|..
T Consensus 148 ~~~~~--~~~ls~av~~~~---------~~~~~~~-----d-~~~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 148 EPEAP--RLLLTAAVSAGK---------ETIDAAY-----D-IPEISKYLDFINVMTYDFHG 192 (362)
T ss_pred HhhCc--CeEEEEEecCCh---------HHHhhcC-----C-HHHHhhhcceEEEecccCCC
Confidence 98731 123444332111 0010000 0 12356778999999997654
No 31
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=54.84 E-value=1.3e+02 Score=30.79 Aligned_cols=125 Identities=14% Similarity=0.189 Sum_probs=62.0
Q ss_pred HHHHHh--cCCEEEEecCCC----CChhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHH
Q 010782 65 LKAFAN--TGVELMIGIPNS----DLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNV 138 (501)
Q Consensus 65 l~A~a~--~gi~V~vGv~n~----~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~v 138 (501)
+.++++ .+++|++.|... ....+.++....+++++ +|..+...-...+|-+==|-..........++..|+++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 555665 389999988652 23344444333333332 22222221235566654444322112345788999999
Q ss_pred HHHHHHcCC-CCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCcc
Q 010782 139 FTALKKAGL-HKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (501)
Q Consensus 139 k~aL~~~gl-~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~ 204 (501)
|++|.+... .....++.+.... ...... ..+.+.-|.+..|++.+-.|=|..
T Consensus 136 r~~l~~~~~~~~~~~lsi~v~~~---------~~~~~~-----~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 136 REALDKEGAEGKGYLLTIAVPAG---------PDKIDK-----GYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHhcccCCceEEEEEecCC---------hHHHHh-----hhhhHHHHHhhCcEEEEeeeccCC
Confidence 999986410 0113344432211 111100 001023467788999998886554
No 32
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=54.63 E-value=24 Score=38.70 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCCEEEE-------ec-----CC-------hHHHHHHHhcCCEEEEecCCCCChhhhhhhhhHHHHHHh
Q 010782 40 PDKVAQLVKQHNIKYLRI-------YD-----SN-------IQVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKN 100 (501)
Q Consensus 40 ~~~Vv~llks~~i~~VRl-------Y~-----~d-------~~vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~ 100 (501)
-+|=+++||+.|++.-|+ += .| .+++.+|.+.||+-+|.+.--+++.--.+ ...|...
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~---~GGW~n~ 132 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHS---NGDWLNR 132 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHH---cCCCCCH
Confidence 344478999999887775 21 13 26999999999999999987666542111 1334332
Q ss_pred hcc----ccCC------CCeEEEEEeccccc
Q 010782 101 SIL----PYYP------AAKITYITVGAEVT 121 (501)
Q Consensus 101 ~v~----~y~p------~~~I~~I~VGNEvl 121 (501)
.+. .|.. ++ |+.-+-=||+.
T Consensus 133 ~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~ 162 (469)
T PRK13511 133 ENIDHFVRYAEFCFEEFPE-VKYWTTFNEIG 162 (469)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCEEEEccchh
Confidence 221 1110 35 77777778864
No 33
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=53.83 E-value=43 Score=31.57 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=46.1
Q ss_pred HHHHHHHhc--CCEEEEecCCCCChh---hhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccCCC-CChhhHHHHHH
Q 010782 63 QVLKAFANT--GVELMIGIPNSDLLP---FAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTD-NSSSLVVPAMQ 136 (501)
Q Consensus 63 ~vl~A~a~~--gi~V~vGv~n~~~~~---ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~-~~~~~Lv~am~ 136 (501)
..++.+++. |++|++.|....... ++++++..++.+ +++..+...-++.+|-+==|-..... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 456666665 999999887643221 234433333332 22222222223455554334332211 12578999999
Q ss_pred HHHHHHHHcCC
Q 010782 137 NVFTALKKAGL 147 (501)
Q Consensus 137 ~vk~aL~~~gl 147 (501)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977654
No 34
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=50.56 E-value=2.1e+02 Score=30.55 Aligned_cols=145 Identities=10% Similarity=0.171 Sum_probs=70.4
Q ss_pred ecCCCCCCCCHHHHHHH---HHhCCCCEEEEecCC--------------hHHHHHHHhc-CCE-EEEecCCCCChhhhhh
Q 010782 30 YGRNADDLPTPDKVAQL---VKQHNIKYLRIYDSN--------------IQVLKAFANT-GVE-LMIGIPNSDLLPFAQF 90 (501)
Q Consensus 30 Yg~~~~nlps~~~Vv~l---lks~~i~~VRlY~~d--------------~~vl~A~a~~-gi~-V~vGv~n~~~~~ia~~ 90 (501)
+|.+.. -++++|++. |...|++.|.+.+.| .++++++.+. |++ +-++--..+ .+..
T Consensus 161 ~g~~r~--r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~~~~- 235 (414)
T TIGR01579 161 RGRSRS--VPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPE--DIDE- 235 (414)
T ss_pred cCCCcc--CCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChh--hCCH-
Confidence 454333 477888654 445699999885422 2466666543 442 444321111 1111
Q ss_pred hhhHHHHHHhhccccCCCCeEEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeeccccccc
Q 010782 91 QSNADSWLKNSILPYYPAAKITYITVGAEVTES-------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLS 163 (501)
Q Consensus 91 ~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~-------~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~ 163 (501)
+.. ..++++ . .....|.+|=|-... ...+.+..+.+++.+|+.. .| +.+++..-.
T Consensus 236 -ell-~~m~~~--~----~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv---- 297 (414)
T TIGR01579 236 -ELL-EAIASE--K----RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIV---- 297 (414)
T ss_pred -HHH-HHHHhc--C----ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEE----
Confidence 111 122211 0 012345555554332 2345677888888887643 22 445554322
Q ss_pred ccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCcccc
Q 010782 164 RSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAYR 206 (501)
Q Consensus 164 ~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~~ 206 (501)
.+| |+-. +-+...++|+.+. .+-.+++|||--+-
T Consensus 298 -G~P---gET~----ed~~~tl~~i~~~-~~~~~~~~~~sp~p 331 (414)
T TIGR01579 298 -GFP---GESE----EDFQETLRMVKEI-EFSHLHIFPYSARP 331 (414)
T ss_pred -ECC---CCCH----HHHHHHHHHHHhC-CCCEEEeeecCCCC
Confidence 244 1222 2345566777654 35567777765543
No 35
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=50.20 E-value=52 Score=33.59 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=49.0
Q ss_pred hHHHHHHHhcCCEEEEecCCCC--------ChhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHH
Q 010782 62 IQVLKAFANTGVELMIGIPNSD--------LLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVP 133 (501)
Q Consensus 62 ~~vl~A~a~~gi~V~vGv~n~~--------~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~ 133 (501)
+.+++++++.++||++.|.+.. ...+.+++..-..++ +++..+...-.+.+|-+-=|.+.. ......+.
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~~--~d~~~~~~ 124 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVPP--EDREAYTQ 124 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCCH--HHHHHHHH
Confidence 5788888889999998887642 123333433222332 233322221234555554454421 23566889
Q ss_pred HHHHHHHHHHHcCC
Q 010782 134 AMQNVFTALKKAGL 147 (501)
Q Consensus 134 am~~vk~aL~~~gl 147 (501)
.|+.+|.+|++.|+
T Consensus 125 fl~~lr~~l~~~~~ 138 (313)
T cd02874 125 FLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999999987765
No 36
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=48.32 E-value=21 Score=38.02 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEE
Q 010782 43 VAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMI 77 (501)
Q Consensus 43 Vv~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~v 77 (501)
-+++|+.+||++||+. .+|.-+.+|.+.||+|.=
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 3789999999999999 789889999999999973
No 37
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.84 E-value=61 Score=34.47 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=31.7
Q ss_pred HcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHhhc
Q 010782 251 ALNFRTIKIMVTETGWPSKGSPKE---KAATPDNAQIYNTNLIRHVIND 296 (501)
Q Consensus 251 k~g~~~~~vvVsETGWPS~G~~~~---~~as~~na~~y~~~lv~~~~s~ 296 (501)
..|+..++|++| |||.|.-.+ -..|...++.-+.++++.+...
T Consensus 142 d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 142 DSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred hcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 357788899976 999997653 2366677777788888888763
No 38
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=47.66 E-value=42 Score=33.60 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHhhccCCCeeeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecCCCCC
Q 010782 5 FELFFAISLLLALLGLCKGSTIGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSDL 84 (501)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~nlps~~~Vv~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~n~~~ 84 (501)
++..+++++++++.++|...- |... ..--+.|++.+|.++||+.-|. +-++.|..+.| ..
T Consensus 4 ~~~~l~~l~l~l~L~gCk~~L----y~gL--~e~eANemlAlL~~~gI~A~K~---------~~~~g~~~l~V--e~--- 63 (246)
T COG4669 4 LRKYLFLLLLILLLTGCKVDL----YTGL--SEKEANEMLALLMSHGINAEKK---------ADKDGGTSLLV--EE--- 63 (246)
T ss_pred HHHHHHHHHHHHHHhcchHHH----HcCC--CHhHHHHHHHHHHHcCCcceee---------ccCCCceEEEE--cH---
Confidence 444555666666566554211 1111 1125778899999999998887 11233444433 32
Q ss_pred hhhhhhhhhHHHHHHhhccccCCCCeEEEEEecccccc
Q 010782 85 LPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTE 122 (501)
Q Consensus 85 ~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~ 122 (501)
++...|.+|++.+=.|.-+.+++.-|+=++--+.
T Consensus 64 ----~~fa~Av~iL~~~GlPr~~f~~l~d~Fp~dgLVs 97 (246)
T COG4669 64 ----SDFAEAVEILNQNGLPRKKFTTLGDIFPKDGLVS 97 (246)
T ss_pred ----HHHHHHHHHHHhcCCCCCCCCcHHHhCCcccccC
Confidence 1234578899988777655566644444444333
No 39
>PLN02814 beta-glucosidase
Probab=47.30 E-value=44 Score=37.05 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhcCCEEEEecCCCCChh
Q 010782 42 KVAQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (501)
Q Consensus 42 ~Vv~llks~~i~~VRl-------Y~-----~d~-------~vl~A~a~~gi~V~vGv~n~~~~~ 86 (501)
|=++++|++|++.-|. += .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 81 EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 81 EDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred HHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 3378899998877765 31 232 689999999999999998666653
No 40
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=46.63 E-value=30 Score=33.21 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=31.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEec
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGI 79 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv 79 (501)
+|+|+..|++++|+.+..+.-+.+|.+.||+|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 789999999999999998878889999999998333
No 41
>PLN00196 alpha-amylase; Provisional
Probab=45.64 E-value=74 Score=34.55 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=37.1
Q ss_pred eeEEecCCCCCCCCHHHH---HHHHHhCCCCEE-----------------EEecCC-h---------HHHHHHHhcCCEE
Q 010782 26 IGVCYGRNADDLPTPDKV---AQLVKQHNIKYL-----------------RIYDSN-I---------QVLKAFANTGVEL 75 (501)
Q Consensus 26 ~GvnYg~~~~nlps~~~V---v~llks~~i~~V-----------------RlY~~d-~---------~vl~A~a~~gi~V 75 (501)
-|++|-....+.-.-..+ +..|+++||+.| +.|+.| + ++++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 588875433221122333 567888898887 456565 2 4778888999999
Q ss_pred EEecCCC
Q 010782 76 MIGIPNS 82 (501)
Q Consensus 76 ~vGv~n~ 82 (501)
++.+-..
T Consensus 109 ilDvV~N 115 (428)
T PLN00196 109 IADIVIN 115 (428)
T ss_pred EEEECcc
Confidence 9997543
No 42
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.31 E-value=25 Score=37.39 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=31.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~ 80 (501)
+++|+.+|+++||+.. +|.-+.+|.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 7899999999999999 99999999999999974333
No 43
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=44.96 E-value=3.3e+02 Score=30.24 Aligned_cols=61 Identities=26% Similarity=0.224 Sum_probs=39.5
Q ss_pred HHhhccccCC-CCeEEEEEeccccccC------CC---CChhhHHHHHHH-HHHHHHHcCCCCCeEEe-eecc
Q 010782 98 LKNSILPYYP-AAKITYITVGAEVTES------TD---NSSSLVVPAMQN-VFTALKKAGLHKRIKVS-STHS 158 (501)
Q Consensus 98 v~~~v~~y~p-~~~I~~I~VGNEvl~~------~~---~~~~~Lv~am~~-vk~aL~~~gl~~~IkVs-T~~~ 158 (501)
+.+-|+.|-. +..|-+|.+.||+... .+ -++++....|++ +.-+|+++|+...+|+= ..|+
T Consensus 210 ~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n 282 (496)
T PF02055_consen 210 FVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHN 282 (496)
T ss_dssp HHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 3444544432 5789999999999862 22 246778888876 99999999985457763 3444
No 44
>PLN03059 beta-galactosidase; Provisional
Probab=44.80 E-value=2.9e+02 Score=32.81 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=69.4
Q ss_pred HHHHHHHhCCCCEEEEecC---C---------------hHHHHHHHhcCCEEEEec---------------CCCCChh--
Q 010782 42 KVAQLVKQHNIKYLRIYDS---N---------------IQVLKAFANTGVELMIGI---------------PNSDLLP-- 86 (501)
Q Consensus 42 ~Vv~llks~~i~~VRlY~~---d---------------~~vl~A~a~~gi~V~vGv---------------~n~~~~~-- 86 (501)
+.++.+|+.|++.|-+|-. + ..-|+.+++.||+|+|=. |.-..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 4566778899999999832 1 246778889999999843 2111111
Q ss_pred hh-hh---hhhHHHHHHhhcc-----cc--CCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCCeEEee
Q 010782 87 FA-QF---QSNADSWLKNSIL-----PY--YPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSS 155 (501)
Q Consensus 87 ia-~~---~~~A~~Wv~~~v~-----~y--~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT 155 (501)
+. .+ .++.++|+..-+. ++ -.+..|..+=|=||-=.-....-..=..+|+.+++.+++.|++ ||.-|
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t 220 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWVM 220 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceEE
Confidence 11 11 1344566554322 11 1246799999999942110001112367999999999999984 77666
Q ss_pred ecc
Q 010782 156 THS 158 (501)
Q Consensus 156 ~~~ 158 (501)
.+.
T Consensus 221 ~dg 223 (840)
T PLN03059 221 CKQ 223 (840)
T ss_pred CCC
Confidence 654
No 45
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=43.46 E-value=3.5e+02 Score=29.70 Aligned_cols=248 Identities=16% Similarity=0.226 Sum_probs=109.6
Q ss_pred HHHHhCCCCEEEEecC--C---------------------hHHHHHHHhcCCEEEEecCCCCChhhhhh-----------
Q 010782 45 QLVKQHNIKYLRIYDS--N---------------------IQVLKAFANTGVELMIGIPNSDLLPFAQF----------- 90 (501)
Q Consensus 45 ~llks~~i~~VRlY~~--d---------------------~~vl~A~a~~gi~V~vGv~n~~~~~ia~~----------- 90 (501)
.+.+..||+.||+... | -.++..+.+.||+-+|-+.-.. ..+++.
T Consensus 47 ~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p-~~~~~~~~~~~~~~~~~ 125 (486)
T PF01229_consen 47 ELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMP-MALASGYQTVFWYKGNI 125 (486)
T ss_dssp HHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTTEE-
T ss_pred HHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEech-hhhcCCCCccccccCCc
Confidence 3344579999999742 1 1588888999999877654210 011000
Q ss_pred --hhhHHHH-------HHhhccccCCCCeEE--EEEeccccccCC---CCChhhHHHHHHHHHHHHHHcCCCCCeEEeee
Q 010782 91 --QSNADSW-------LKNSILPYYPAAKIT--YITVGAEVTEST---DNSSSLVVPAMQNVFTALKKAGLHKRIKVSST 156 (501)
Q Consensus 91 --~~~A~~W-------v~~~v~~y~p~~~I~--~I~VGNEvl~~~---~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~ 156 (501)
+..-..| ++..+.+|- ...|. .+=|=||+=... ....++-....+.+.++|++.. ..++|+-|
T Consensus 126 ~pp~~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp 202 (486)
T PF01229_consen 126 SPPKDYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGP 202 (486)
T ss_dssp S-BS-HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCc
Confidence 1111223 222233331 01111 455678853321 2334556677777888888775 35889877
Q ss_pred cccccccccCCCCCcccccchhhhhhhHHHHHhh---cCCCceeccCCCccccCCCCccccccccccCCCceecCCCCcc
Q 010782 157 HSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLAD---NQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLL 233 (501)
Q Consensus 157 ~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~---~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~ 233 (501)
-.. + +. ...+...++|... .-||+..|.||+-...... ......-. .
T Consensus 203 ~~~--~--~~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~-------------~~~~~~~~--~ 252 (486)
T PF01229_consen 203 AFA--W--AY-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN-------------ENMYERIE--D 252 (486)
T ss_dssp EEE--T--T------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S-------------S-EEEEB----
T ss_pred ccc--c--cH-----------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccc-------------hhHHhhhh--h
Confidence 110 0 00 1234555666554 3588999999853221100 00000000 0
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEE
Q 010782 234 YTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSPKE-KAATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIF 312 (501)
Q Consensus 234 Y~n~fda~vDav~~a~~k~g~~~~~vvVsETGWPS~G~~~~-~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF 312 (501)
...+++. +--+...+...+.+++++.++| |.+.-.... -.-+.-+|+-..+++++.... .++.|-|
T Consensus 253 ~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sy 319 (486)
T PF01229_consen 253 SRRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSY 319 (486)
T ss_dssp HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEE
T ss_pred HHHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhc
Confidence 1112222 1112233445578899999999 876544332 123445555555556665421 2333322
Q ss_pred ----ecccccccCCCcccceeeeecCCCCee
Q 010782 313 ----SLFNENRKPGLESERNWGLFYPDQTSV 339 (501)
Q Consensus 313 ----~~FdE~~K~g~~~E~~wGlf~~d~t~k 339 (501)
..|.|.--+...+-.-|||++-+|-+|
T Consensus 320 wt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 320 WTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp S-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred cchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 134443222223456699999998554
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=41.95 E-value=55 Score=29.38 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecC
Q 010782 41 DKVAQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~ 80 (501)
..+.++|+.+|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999999999999999999999999999866
No 47
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.88 E-value=3.2e+02 Score=26.21 Aligned_cols=129 Identities=12% Similarity=0.139 Sum_probs=63.1
Q ss_pred CHHHHHHHHHhCCCCEEEEecCCh---------HHHHHHHhcCCEEEEe--cCCCCChhhhhhhhhHHHHHHhhccccCC
Q 010782 39 TPDKVAQLVKQHNIKYLRIYDSNI---------QVLKAFANTGVELMIG--IPNSDLLPFAQFQSNADSWLKNSILPYYP 107 (501)
Q Consensus 39 s~~~Vv~llks~~i~~VRlY~~d~---------~vl~A~a~~gi~V~vG--v~n~~~~~ia~~~~~A~~Wv~~~v~~y~p 107 (501)
...++++.|.++|.++|=+..... ....+++..|+++.+. .+.....+.......+.+|++++
T Consensus 96 ~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 169 (265)
T cd01543 96 IGRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL------ 169 (265)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC------
Confidence 345556777777887776654321 2345566778876221 11111112222233455665432
Q ss_pred CCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCC--CCCeEEeeecccccccccCCCCCcccccchhhhhhhHH
Q 010782 108 AAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGL--HKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLL 185 (501)
Q Consensus 108 ~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl--~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l 185 (501)
..+++|++.|+.+. .. +.++|++.|+ .+.|.|..-+....+..-..|.-.....+...+-+..+
T Consensus 170 -~~~~ai~~~~d~~a---------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~ 235 (265)
T cd01543 170 -PKPVGIFACTDARA---------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAA 235 (265)
T ss_pred -CCCcEEEecChHHH---------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHH
Confidence 13567888776442 12 2345566666 34577766654433222233444455555433333333
Q ss_pred HH
Q 010782 186 EF 187 (501)
Q Consensus 186 ~f 187 (501)
+.
T Consensus 236 ~~ 237 (265)
T cd01543 236 KL 237 (265)
T ss_pred HH
Confidence 33
No 48
>PLN02849 beta-glucosidase
Probab=41.87 E-value=37 Score=37.65 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCCEEEE-------ec-----CCh-------HHHHHHHhcCCEEEEecCCCCChh
Q 010782 42 KVAQLVKQHNIKYLRI-------YD-----SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (501)
Q Consensus 42 ~Vv~llks~~i~~VRl-------Y~-----~d~-------~vl~A~a~~gi~V~vGv~n~~~~~ 86 (501)
|=+++|++.|++.-|+ +- .|+ +++.++.+.||+-+|.+.--+++.
T Consensus 83 eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 83 EDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 3378899998887775 31 132 689999999999999998666553
No 49
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.84 E-value=2.4e+02 Score=30.79 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=73.5
Q ss_pred eeeEEecCCCCCCC----CHHHHHHHHHh-CCCCEEEEecCCh-----HHHHHHHhc-CCEEEEecCCCCChhhhhhhhh
Q 010782 25 TIGVCYGRNADDLP----TPDKVAQLVKQ-HNIKYLRIYDSNI-----QVLKAFANT-GVELMIGIPNSDLLPFAQFQSN 93 (501)
Q Consensus 25 ~~GvnYg~~~~nlp----s~~~Vv~llks-~~i~~VRlY~~d~-----~vl~A~a~~-gi~V~vGv~n~~~~~ia~~~~~ 93 (501)
.+|.|=+.|+.+++ +-.+.++.|.+ .|+.+||+=..+| ++++|++++ .+-=.+-+|.. +-+
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGs----- 266 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGS----- 266 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCC-----
Confidence 46888888877764 34444443322 4678888877664 577777764 44434444432 111
Q ss_pred HHHHHHhhccccCCCCeEEEEEecccccc--CCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCc
Q 010782 94 ADSWLKNSILPYYPAAKITYITVGAEVTE--STDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAG 171 (501)
Q Consensus 94 A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~--~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g 171 (501)
|++|- +...+.+..+..++.+|++..+.-++..|-|+ || |
T Consensus 267 ------------------------d~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVG-----------FP---g 308 (437)
T COG0621 267 ------------------------DRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVG-----------FP---G 308 (437)
T ss_pred ------------------------HHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEE-----------CC---C
Confidence 12221 12345777888899999888655444444444 44 3
Q ss_pred ccccchhhhhhhHHHHHhhcCCCceeccCCCccc
Q 010782 172 AFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (501)
Q Consensus 172 ~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~ 205 (501)
.-.+|+ ...++|+ +..-|=.+|+++|=.-
T Consensus 309 ETeedF----e~tl~lv-~e~~fd~~~~F~YSpR 337 (437)
T COG0621 309 ETEEDF----EETLDLV-EEVRFDRLHVFKYSPR 337 (437)
T ss_pred CCHHHH----HHHHHHH-HHhCCCEEeeeecCCC
Confidence 333333 3344444 4456778888876543
No 50
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=41.59 E-value=49 Score=36.00 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCC
Q 010782 128 SSLVVPAMQNVFTALKKAGLH 148 (501)
Q Consensus 128 ~~~Lv~am~~vk~aL~~~gl~ 148 (501)
.+..+.-++.+...|.++||.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 455677778888999999996
No 51
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.26 E-value=37 Score=35.79 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCEEEEecCC-hHHHHHHHhcCCEEE
Q 010782 41 DKVAQLVKQHNIKYLRIYDSN-IQVLKAFANTGVELM 76 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRlY~~d-~~vl~A~a~~gi~V~ 76 (501)
.-..++|+..|+++||+..-+ |.-+.++.+.||+|.
T Consensus 298 gigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 298 GIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred hHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 344789999999999999999 888889999999986
No 52
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.07 E-value=40 Score=36.17 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=33.5
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecCC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPN 81 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~n 81 (501)
.++|+..|+++||+..-+|.-+.++.+.||+|.==++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78899999999999999999999999999999854443
No 53
>PRK08815 GTP cyclohydrolase; Provisional
Probab=39.63 E-value=40 Score=35.96 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=32.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~ 80 (501)
.|+|+..|+++||+...+|.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999888999999999974444
No 54
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=38.85 E-value=41 Score=36.82 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~ 80 (501)
.++|+..||++||+..-+|.-+.++.+.||+|.==++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999999999999999974444
No 55
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=38.36 E-value=1.9e+02 Score=30.97 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=60.2
Q ss_pred HHHHHHHHhCCCCEEEEecC----------Ch------------HHHHHHHhcCCEEEEecCCCC-----Ch------hh
Q 010782 41 DKVAQLVKQHNIKYLRIYDS----------NI------------QVLKAFANTGVELMIGIPNSD-----LL------PF 87 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRlY~~----------d~------------~vl~A~a~~gi~V~vGv~n~~-----~~------~i 87 (501)
++....+|+.|++.|||.-. +| ++++.+.+.||+|++.+-.-. .. ..
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 66677889999999999732 32 356667789999999854321 00 11
Q ss_pred hhh----hhhHHHHHHhhcc-ccCCCCeEEEEEecccccc-CCCCChhhH-HHHHHHHHHHHHHcC
Q 010782 88 AQF----QSNADSWLKNSIL-PYYPAAKITYITVGAEVTE-STDNSSSLV-VPAMQNVFTALKKAG 146 (501)
Q Consensus 88 a~~----~~~A~~Wv~~~v~-~y~p~~~I~~I~VGNEvl~-~~~~~~~~L-v~am~~vk~aL~~~g 146 (501)
... ......| +.|. +|-....|.+|-+=||+.. ..+.....- -+|..-|++.+.+.-
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcC
Confidence 110 1112223 2232 3334567777888899884 112222223 488888876665443
No 56
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.80 E-value=44 Score=36.00 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=32.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIP 80 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~ 80 (501)
.++|+..|+++||+..-+|.-+.++.+.||+|.==++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7889999999999999999989999999999973343
No 57
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=37.73 E-value=2.8e+02 Score=24.28 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=63.3
Q ss_pred HHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCEEEEecCCCCChhhhhhhhhHHHHHHhhccccCCCCeEEE
Q 010782 44 AQLVKQHNIKYLRIYDSNI----------QVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITY 113 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~----------~vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~ 113 (501)
++.|.++|.++|-+...++ ....++++.|++...-.......... .......|+++. .| ++
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cE
Confidence 3556677998888887431 35677888999865433332221111 112223376544 22 48
Q ss_pred EEeccccccCCCCChhhHHHHHHHHHHHHHHcCC--CCCeEEeeecccccccccCCCCCcccccchhhhhhh
Q 010782 114 ITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGL--HKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKP 183 (501)
Q Consensus 114 I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl--~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~ 183 (501)
|+++|+.+. ..+..+|.+.|+ .+.+.|-+-+..... ....|.-..++.+...+-..
T Consensus 72 ii~~~~~~a-------------~~~~~~l~~~g~~vP~di~vv~~~~~~~~-~~~~p~it~i~~~~~~~g~~ 129 (160)
T PF13377_consen 72 IICSNDRLA-------------LGVLRALRELGIRVPQDISVVSFDDSPLL-EFFSPPITTIDQDPREMGRE 129 (160)
T ss_dssp EEESSHHHH-------------HHHHHHHHHTTSCTTTTSEEEEESSSGHH-HCSSSTSEEEEE-HHHHHHH
T ss_pred EEEcCHHHH-------------HHHHHHHHHcCCcccccccEEEecCcHHH-HHHcCCCceecCCHHHHHHH
Confidence 889887542 223356677776 355777776654433 33344566676665443333
No 58
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=37.60 E-value=4e+02 Score=26.01 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----------hHHHHHHHhcCCEEEEecCCCC---Ch--hhhhhhhhHHHHHHhh
Q 010782 38 PTPDKVAQLVKQHNIKYLRIYDSN-----------IQVLKAFANTGVELMIGIPNSD---LL--PFAQFQSNADSWLKNS 101 (501)
Q Consensus 38 ps~~~Vv~llks~~i~~VRlY~~d-----------~~vl~A~a~~gi~V~vGv~n~~---~~--~ia~~~~~A~~Wv~~~ 101 (501)
|++ ...+.||+.+...|=.|=++ +.=++.+...|++|+. |++.. .. ..+.....|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 555 55667788888877777433 2456778889999887 66532 11 1222333444444444
Q ss_pred ccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCC
Q 010782 102 ILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLH 148 (501)
Q Consensus 102 v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~ 148 (501)
..--.|...+.++.|=..... ..-...++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~--~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALD--DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCc--chhHHHHHHHHHHHHHHHHhcCCc
Confidence 444456566778887554321 123568999999999999999875
No 59
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=37.50 E-value=45 Score=37.36 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecCC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPN 81 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~n 81 (501)
+++|+..||++||+..-+|.=+.++++.||+|.==++.
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999999999999999999844443
No 60
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=37.20 E-value=83 Score=27.46 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHHHhcCCEEEE
Q 010782 41 DKVAQLVKQHNIKYLRIYD--SN---IQVLKAFANTGVELMI 77 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRlY~--~d---~~vl~A~a~~gi~V~v 77 (501)
+++.+.++++|++.|+++= .. ..+|++|+..||++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3445667789999999983 33 4799999999998654
No 61
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.78 E-value=91 Score=28.19 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=34.7
Q ss_pred CHHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHHHhcCCEEEEecCCC
Q 010782 39 TPDKVAQLVKQHNIKYLRIYDS---------------------N--IQVLKAFANTGVELMIGIPNS 82 (501)
Q Consensus 39 s~~~Vv~llks~~i~~VRlY~~---------------------d--~~vl~A~a~~gi~V~vGv~n~ 82 (501)
.|+++++.||+.+++.|-+|.- | .++++|+.+.||+|++=+...
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3678889999888988888753 1 268899999999999876654
No 62
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=34.66 E-value=88 Score=25.81 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCeEEEEEeccc-cccC--------CCCChhhHHHHHHHHHHHHHHcCCCCCeEEeee
Q 010782 108 AAKITYITVGAE-VTES--------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSST 156 (501)
Q Consensus 108 ~~~I~~I~VGNE-vl~~--------~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~ 156 (501)
...|.+-=|+|| .... .....+.+.+.|+++-+.+++.+= ..+||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 467999999999 5521 112357899999999999998764 4677655
No 63
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=34.60 E-value=1.6e+02 Score=29.08 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=25.5
Q ss_pred HcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHhh
Q 010782 251 ALNFRTIKIMVTETGWPSKGSPKE---KAATPDNAQIYNTNLIRHVIN 295 (501)
Q Consensus 251 k~g~~~~~vvVsETGWPS~G~~~~---~~as~~na~~y~~~lv~~~~s 295 (501)
.++++.++|+ ..|||.|...+ ...+....+..+.++++.+..
T Consensus 44 ~~~~~~~~i~---FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 44 DLGFPGVVIL---FSWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HhCCCceEEE---EEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4567776666 56999997643 223444455555666666654
No 64
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=31.47 E-value=7.5e+02 Score=27.36 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=79.4
Q ss_pred HHHHHHHHHhCCCCEEEEecCC-----------------------------------hHHHHHHHhcCCEEEEecCCCCC
Q 010782 40 PDKVAQLVKQHNIKYLRIYDSN-----------------------------------IQVLKAFANTGVELMIGIPNSDL 84 (501)
Q Consensus 40 ~~~Vv~llks~~i~~VRlY~~d-----------------------------------~~vl~A~a~~gi~V~vGv~n~~~ 84 (501)
+.+|+++||.+.+..+|-=+-+ .+-+.-++.-|.+.++.+-...
T Consensus 51 RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~Gs- 129 (501)
T COG3534 51 RKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLGS- 129 (501)
T ss_pred HHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecCC-
Confidence 6789999999999999853210 1456667778888888776543
Q ss_pred hhhhhhhhhHHHHHHhh------------ccccC--CCCeEEEEEeccccccC---CCCChhhHHHHHHHHHHHHHHcC-
Q 010782 85 LPFAQFQSNADSWLKNS------------ILPYY--PAAKITYITVGAEVTES---TDNSSSLVVPAMQNVFTALKKAG- 146 (501)
Q Consensus 85 ~~ia~~~~~A~~Wv~~~------------v~~y~--p~~~I~~I~VGNEvl~~---~~~~~~~Lv~am~~vk~aL~~~g- 146 (501)
...++|+.||.=- ...-+ | -+|++..+|||-=-- +..+++.-..+..+.+++.+=-.
T Consensus 130 ----rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P-~nvK~w~lGNEm~GpWq~G~~~a~EY~~~A~e~~k~~k~~d~ 204 (501)
T COG3534 130 ----RGVDEARNWVEYCNHPGGTYWSDLRRENGREEP-WNVKYWGLGNEMDGPWQCGHKTAPEYGRLANEYRKYMKYFDP 204 (501)
T ss_pred ----ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCC-cccceEEeccccCCCcccccccCHHHHHHHHHHHHHHhhcCc
Confidence 3446788887521 00001 3 379999999995211 22344444445555555553111
Q ss_pred CCCCeEEeeecccccccccCCCCCcccccchhh-hhhhHHHHHhhcCCCceeccC
Q 010782 147 LHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAH-FLKPLLEFLADNQSPFMIDIY 200 (501)
Q Consensus 147 l~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~-~i~~~l~fL~~~~d~~~vNiY 200 (501)
..+.+-++++.... .+.++|.. ++.. -.+..|++.+|-|
T Consensus 205 t~e~~v~g~a~~~n-----------~~~~~W~~~vl~~----~~e~vD~ISlH~Y 244 (501)
T COG3534 205 TIENVVCGSANGAN-----------PTDPNWEAVVLEE----AYERVDYISLHYY 244 (501)
T ss_pred cccceEEeecCCCC-----------CCchHHHHHHHHH----HhhhcCeEEEEEe
Confidence 11123333333221 23345533 3332 3455899999888
No 65
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=31.39 E-value=1.1e+02 Score=27.29 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCEEEEec----------CC---hHHHHHHHhcCCEEEE
Q 010782 40 PDKVAQLVKQHNIKYLRIYD----------SN---IQVLKAFANTGVELMI 77 (501)
Q Consensus 40 ~~~Vv~llks~~i~~VRlY~----------~d---~~vl~A~a~~gi~V~v 77 (501)
.+++.+..+++|++.|+++= .. ..+|++|+..||+|..
T Consensus 52 a~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 52 AGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 34556677789999888873 23 4799999999999754
No 66
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.58 E-value=4.7e+02 Score=25.56 Aligned_cols=87 Identities=14% Similarity=0.348 Sum_probs=56.5
Q ss_pred CHHHHHHHHHhCCCCEEEEecCC---hHHHHHHHh--cCCEEEEecCCCCChhhhhhhhhHHHHHHhhccccCCCCeEEE
Q 010782 39 TPDKVAQLVKQHNIKYLRIYDSN---IQVLKAFAN--TGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITY 113 (501)
Q Consensus 39 s~~~Vv~llks~~i~~VRlY~~d---~~vl~A~a~--~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~ 113 (501)
+++|+.+.++ .|.+.|++|-++ ++-++++++ .+++++. ...+. .+++.+|++ ..+.+
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---tGGI~-----~~N~~~~l~---------aGa~~ 179 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---TGGVN-----LDNVKDWFA---------AGADA 179 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---ECCCC-----HHHHHHHHH---------CCCcE
Confidence 7899888774 699999999665 577777775 3466553 23331 234566765 24578
Q ss_pred EEeccccccCC-CCChhhHHHHHHHHHHHHH
Q 010782 114 ITVGAEVTEST-DNSSSLVVPAMQNVFTALK 143 (501)
Q Consensus 114 I~VGNEvl~~~-~~~~~~Lv~am~~vk~aL~ 143 (501)
+.||...+... ....+.+-...+++++.++
T Consensus 180 vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 180 VGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 89998876432 2335667777777766664
No 67
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=30.20 E-value=2.5e+02 Score=28.48 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=58.9
Q ss_pred HhcCCEEEEecCCCCC-----hhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccCC--CCChhhHHHHHHHHHHH
Q 010782 69 ANTGVELMIGIPNSDL-----LPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTEST--DNSSSLVVPAMQNVFTA 141 (501)
Q Consensus 69 a~~gi~V~vGv~n~~~-----~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~--~~~~~~Lv~am~~vk~a 141 (501)
+..|++|++.|..... ..+.++...... +.++|..++..-.+.+|-+==|-.... ..........|+.+|++
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 3569999887765422 223323222222 222222222112356666644544322 23467789999999999
Q ss_pred HHHcCCC-CCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCcc
Q 010782 142 LKKAGLH-KRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (501)
Q Consensus 142 L~~~gl~-~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~ 204 (501)
|++.+-. +.+.++.+...... ....+ -+..|.+..|++.+-.|-|..
T Consensus 149 l~~~~~~~~~~~ls~a~p~~~~--------------~~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 149 LKRANRSGKGYILSVAVPPSPD--------------YYDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHSTSEEEEEEECSHH--------------HHTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hcccccccceeEEeeccccccc--------------ccccc--ccccccccccccccccccCCC
Confidence 9885110 01334444221110 00111 234567788999999986665
No 68
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=29.94 E-value=1.4e+02 Score=31.03 Aligned_cols=41 Identities=5% Similarity=0.049 Sum_probs=31.8
Q ss_pred HHHHHhCCCCEEEEecCCh-HHHHHHHhcCCEEEEecCCCCCh
Q 010782 44 AQLVKQHNIKYLRIYDSNI-QVLKAFANTGVELMIGIPNSDLL 85 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~-~vl~A~a~~gi~V~vGv~n~~~~ 85 (501)
-..|+..|.+. .+-..|. -..+.+++-.+.++++.|.+..+
T Consensus 51 ~~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~~~ 92 (302)
T COG2113 51 KKILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPTTP 92 (302)
T ss_pred HHHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCCCh
Confidence 34678888876 7777774 46688999999999999987653
No 69
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=29.21 E-value=1.1e+02 Score=33.60 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCEEEEecCCCCChh
Q 010782 41 DKVAQLVKQHNIKYLRI-------YD------SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRl-------Y~------~d~-------~vl~A~a~~gi~V~vGv~n~~~~~ 86 (501)
+|=+++||++|++.-|+ += .|+ +++..|.+.||+-+|.+.--+++.
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 34478999998887765 31 232 689999999999999998766653
No 70
>PRK07198 hypothetical protein; Validated
Probab=29.17 E-value=49 Score=35.54 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHHHhcCCEEEEecCC
Q 010782 44 AQLVKQHNIKYL-RIYDSNIQVLKAFANTGVELMIGIPN 81 (501)
Q Consensus 44 v~llks~~i~~V-RlY~~d~~vl~A~a~~gi~V~vGv~n 81 (501)
.++|+.+||++| |+.+.++.-+.++.+.||+|.==++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 678999999999 99999998999999999999855543
No 71
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=29.08 E-value=1.4e+02 Score=32.83 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCEEEE-------ec-----CC-------hHHHHHHHhcCCEEEEecCCCCChh
Q 010782 41 DKVAQLVKQHNIKYLRI-------YD-----SN-------IQVLKAFANTGVELMIGIPNSDLLP 86 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRl-------Y~-----~d-------~~vl~A~a~~gi~V~vGv~n~~~~~ 86 (501)
+|=++||++.|++.-|+ +- .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 34478899988877765 31 12 2689999999999999998766654
No 72
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.06 E-value=7e+02 Score=26.88 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=33.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCccc
Q 010782 126 NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (501)
Q Consensus 126 ~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~ 205 (501)
.+.+.++.+++.+|+++. .+.+++..-. .|| |.=. +-+...++|+.+. .+-.+++++|--.
T Consensus 279 ~~~~~~~~~i~~lr~~~~------~i~i~~d~Iv-----G~P---gET~----ed~~~tl~~i~~l-~~~~~~~~~~sp~ 339 (439)
T PRK14328 279 YTREYYLELVEKIKSNIP------DVAITTDIIV-----GFP---GETE----EDFEETLDLVKEV-RYDSAFTFIYSKR 339 (439)
T ss_pred CCHHHHHHHHHHHHHhCC------CCEEEEEEEE-----ECC---CCCH----HHHHHHHHHHHhc-CCCcccceEecCC
Confidence 457778888888877631 3555543322 244 1212 2244566776554 3456677765543
No 73
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.59 E-value=7.7e+02 Score=26.59 Aligned_cols=136 Identities=13% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCHHHHHHHH---HhCCCCEEEEec-------CC-------hHHHHHHHhcCC-EEEEecCCCCChhhhhhhhhHHHHHH
Q 010782 38 PTPDKVAQLV---KQHNIKYLRIYD-------SN-------IQVLKAFANTGV-ELMIGIPNSDLLPFAQFQSNADSWLK 99 (501)
Q Consensus 38 ps~~~Vv~ll---ks~~i~~VRlY~-------~d-------~~vl~A~a~~gi-~V~vGv~n~~~~~ia~~~~~A~~Wv~ 99 (501)
-++++|++.+ ...|++.|.+.+ .| .++++++...|+ .+-++..+.. .+..+ ..+ .++
T Consensus 167 r~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~--~i~~e--ll~-~l~ 241 (440)
T PRK14334 167 RHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPM--NFTDD--VIA-AMA 241 (440)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcc--cCCHH--HHH-HHH
Confidence 3677776543 346777777643 22 256677666665 3444322221 12111 111 111
Q ss_pred hhccccCCCCeEEEEEecccccc-------CCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcc
Q 010782 100 NSILPYYPAAKITYITVGAEVTE-------STDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGA 172 (501)
Q Consensus 100 ~~v~~y~p~~~I~~I~VGNEvl~-------~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~ 172 (501)
+ . + ..+..+.+|=|-.. +.....+.++.+++.+|++. . .+.+++..-. .+| |.
T Consensus 242 ~----~-~-~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P---gE 301 (440)
T PRK14334 242 E----T-P-AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREAL----P--DVVLSTDIIV-----GFP---GE 301 (440)
T ss_pred h----c-C-cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC---CC
Confidence 1 1 1 12345555544332 12345677888888777653 2 2445554322 244 22
Q ss_pred cccchhhhhhhHHHHHhhcCCCceeccCCCc
Q 010782 173 FNSSHAHFLKPLLEFLADNQSPFMIDIYPYY 203 (501)
Q Consensus 173 F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf 203 (501)
-.++ +...++|+.+. .+-.+++|+|-
T Consensus 302 t~ed----~~~tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 302 TEED----FQETLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred CHHH----HHHHHHHHHhc-CCCEeeeeEee
Confidence 2222 34556676654 35566777654
No 74
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=27.76 E-value=3.9e+02 Score=27.30 Aligned_cols=126 Identities=11% Similarity=0.128 Sum_probs=61.9
Q ss_pred hHHHHHHHh--cCCEEE--E--ecCCCC-ChhhhhhhhhHHHHHHhhccccCCCCeEEEEEec-cccccC--CCCChhhH
Q 010782 62 IQVLKAFAN--TGVELM--I--GIPNSD-LLPFAQFQSNADSWLKNSILPYYPAAKITYITVG-AEVTES--TDNSSSLV 131 (501)
Q Consensus 62 ~~vl~A~a~--~gi~V~--v--Gv~n~~-~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VG-NEvl~~--~~~~~~~L 131 (501)
...+.+++. .++||+ + |=|... ...+++++..-..++++ +..+...-.+.+|-+= =|-... .+.....+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 345556654 479998 4 334432 33455555444444433 3322222234444332 111111 01234568
Q ss_pred HHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccc-cchhhhhhhHHHHHhhcCCCceeccCCCc
Q 010782 132 VPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFN-SSHAHFLKPLLEFLADNQSPFMIDIYPYY 203 (501)
Q Consensus 132 v~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~-~~~~~~i~~~l~fL~~~~d~~~vNiYPyf 203 (501)
+..|+.+|++|.+.|+. +-|+.+-.... .+....+. -| +.-|++..|++.|=.|=|.
T Consensus 133 ~~~l~el~~~l~~~~~~--l~~~v~~~~~~-----~~~~~~~~~~d--------~~~l~~~vD~v~lMtYD~~ 190 (318)
T cd02876 133 IQLVIHLGETLHSANLK--LILVIPPPREK-----GNQNGLFTRKD--------FEKLAPHVDGFSLMTYDYS 190 (318)
T ss_pred HHHHHHHHHHHhhcCCE--EEEEEcCcccc-----ccccccccccC--------HHHHHhhccEEEEEeeccC
Confidence 89999999999887752 44443321110 00001111 11 1236777899999999544
No 75
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=27.46 E-value=91 Score=32.09 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=26.8
Q ss_pred CCccEEEeeeccCCCC-CCCCC-------------------CCCHHHHHHHHHHHHHHHhh
Q 010782 255 RTIKIMVTETGWPSKG-SPKEK-------------------AATPDNAQIYNTNLIRHVIN 295 (501)
Q Consensus 255 ~~~~vvVsETGWPS~G-~~~~~-------------------~as~~na~~y~~~lv~~~~s 295 (501)
..|||.++|.|+|+-. +.|++ .-.--.|++|++.++.+...
T Consensus 205 ~sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 205 QSKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CCcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 4799999999999932 22221 01233578888888777654
No 76
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=26.81 E-value=1.4e+02 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHHHhcCCEEEE
Q 010782 40 PDKVAQLVKQHNIKYLRIY--D--------SN---IQVLKAFANTGVELMI 77 (501)
Q Consensus 40 ~~~Vv~llks~~i~~VRlY--~--------~d---~~vl~A~a~~gi~V~v 77 (501)
.+++.+.++++|++.|+++ . .. ..+|++|+..||+|..
T Consensus 59 ae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 59 AEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 3455667778999988887 3 33 3699999999999754
No 77
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=26.30 E-value=1.2e+02 Score=29.40 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=35.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEecCCCC
Q 010782 44 AQLVKQHNIKYLRIYDSNIQVLKAFANTGVELMIGIPNSD 83 (501)
Q Consensus 44 v~llks~~i~~VRlY~~d~~vl~A~a~~gi~V~vGv~n~~ 83 (501)
+++|+..||+.||+-..+|.=..++.+.||+|.=-++...
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 6789999999999999999989999999999998887653
No 78
>CHL00041 rps11 ribosomal protein S11
Probab=26.20 E-value=1.6e+02 Score=26.01 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHHHhcCCEEEE
Q 010782 41 DKVAQLVKQHNIKYLRIYD--SN---IQVLKAFANTGVELMI 77 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRlY~--~d---~~vl~A~a~~gi~V~v 77 (501)
+++.+.+++.|++.|+++= .. ..++++|+..||+|..
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~ 104 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSS 104 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3345567778999888883 32 4799999999998754
No 79
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=26.11 E-value=3.3e+02 Score=30.06 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCEEEEecCCCCChh
Q 010782 41 DKVAQLVKQHNIKYLRI-------YD------SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRl-------Y~------~d~-------~vl~A~a~~gi~V~vGv~n~~~~~ 86 (501)
+|=+++||+.|++.-|+ +- .|+ +++.+|.+.||+-+|.+.--+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 34478999998887775 31 132 688999999999999998666653
No 80
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=25.85 E-value=2.3e+02 Score=30.73 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.4
Q ss_pred ChhhHHHHHHHHHHHHHHcCCC
Q 010782 127 SSSLVVPAMQNVFTALKKAGLH 148 (501)
Q Consensus 127 ~~~~Lv~am~~vk~aL~~~gl~ 148 (501)
+.+.....++.+...|.++|+.
T Consensus 260 ~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 260 SAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred CHHHHHHHHHHHHHHHHHCCCE
Confidence 3556677788888999999985
No 81
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.80 E-value=1.4e+02 Score=31.29 Aligned_cols=76 Identities=28% Similarity=0.389 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCEEEEecCCCCChhhhhhhhhHHHHHHhhccccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHH
Q 010782 63 QVLKAFANTGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTAL 142 (501)
Q Consensus 63 ~vl~A~a~~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL 142 (501)
.||+++.++|-.+.+|=.-.+ .-+++.|..|+...+..++ .+|.+|+.-|.-+.. .+| ++|
T Consensus 176 ~VLkp~idsGkik~~Ge~~~d----~W~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag---------GaI----~aL 236 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQWTD----GWLPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG---------GAI----AAL 236 (341)
T ss_pred HHHHHHhhCCceEEeeecccc----ccCHHHHHHHHHHHHhccc--CceeEEEcCCCchhH---------HHH----HHH
Confidence 688888888844446632222 2356778889888888875 458888877763221 222 678
Q ss_pred HHcCCCCCeEEeeec
Q 010782 143 KKAGLHKRIKVSSTH 157 (501)
Q Consensus 143 ~~~gl~~~IkVsT~~ 157 (501)
++.||.++++||=-+
T Consensus 237 ~a~Gl~g~vpVsGQD 251 (341)
T COG4213 237 KAQGLAGKVPVSGQD 251 (341)
T ss_pred HhcccCCCCcccCcc
Confidence 889999889976443
No 82
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=25.27 E-value=2.8e+02 Score=30.52 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCEEEEecCCCCChh
Q 010782 41 DKVAQLVKQHNIKYLRI-------YD------SNI-------QVLKAFANTGVELMIGIPNSDLLP 86 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRl-------Y~------~d~-------~vl~A~a~~gi~V~vGv~n~~~~~ 86 (501)
++=+++|++.|++..|+ +- .|+ .++.++.+.||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 34477899988877765 31 132 689999999999999998766654
No 83
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.96 E-value=5.6e+02 Score=24.97 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC----hHHHHHHHh--cCCEEEEecCCCCChhhhhhhhhHHHHHHhhccccCCCCeE
Q 010782 38 PTPDKVAQLVKQHNIKYLRIYDSN----IQVLKAFAN--TGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKI 111 (501)
Q Consensus 38 ps~~~Vv~llks~~i~~VRlY~~d----~~vl~A~a~--~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I 111 (501)
.+|+|+.+-++ .|.+.||+|=++ +.-++++++ .++++|. ...+. .++..+|++. -.
T Consensus 109 ~TptEi~~A~~-~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~p---tGGV~-----~~N~~~~l~a---------Ga 170 (204)
T TIGR01182 109 ATPSEIMLALE-LGITALKLFPAEVSGGVKMLKALAGPFPQVRFCP---TGGIN-----LANVRDYLAA---------PN 170 (204)
T ss_pred CCHHHHHHHHH-CCCCEEEECCchhcCCHHHHHHHhccCCCCcEEe---cCCCC-----HHHHHHHHhC---------CC
Confidence 48999998886 599999999765 688888886 4677763 33332 1345678763 34
Q ss_pred EEEEeccccccC
Q 010782 112 TYITVGAEVTES 123 (501)
Q Consensus 112 ~~I~VGNEvl~~ 123 (501)
..+.+|+..+..
T Consensus 171 ~~vg~Gs~L~~~ 182 (204)
T TIGR01182 171 VACGGGSWLVPK 182 (204)
T ss_pred EEEEEChhhcCc
Confidence 678888887653
No 84
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=24.72 E-value=1.6e+02 Score=30.54 Aligned_cols=218 Identities=15% Similarity=0.177 Sum_probs=110.0
Q ss_pred HHHHHHHhcCCEEE--EecCCCCChhhhhh------------hhhHHHHHHhhccccCCCCeEEEEEeccccccCCC---
Q 010782 63 QVLKAFANTGVELM--IGIPNSDLLPFAQF------------QSNADSWLKNSILPYYPAAKITYITVGAEVTESTD--- 125 (501)
Q Consensus 63 ~vl~A~a~~gi~V~--vGv~n~~~~~ia~~------------~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~--- 125 (501)
.++.-++..||+|- .=||-...+..-.+ .+....+|++.+..|....+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~ 142 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPG 142 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccc
Confidence 46777778898874 22565543321111 22334666665556532137888888899998642
Q ss_pred ---CC-------hhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCC-
Q 010782 126 ---NS-------SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSP- 194 (501)
Q Consensus 126 ---~~-------~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~- 194 (501)
.+ .+.+..+.+-.|++.. +++.-.-+ ++++. + .-.+-+..+++.|.+.+-|
T Consensus 143 ~~r~~~~~~~lG~~yi~~aF~~A~~~~P------~a~L~~ND-y~~~~----~-------~k~~~~~~lv~~l~~~gvpI 204 (320)
T PF00331_consen 143 GLRDSPWYDALGPDYIADAFRAAREADP------NAKLFYND-YNIES----P-------AKRDAYLNLVKDLKARGVPI 204 (320)
T ss_dssp SBCTSHHHHHHTTCHHHHHHHHHHHHHT------TSEEEEEE-SSTTS----T-------HHHHHHHHHHHHHHHTTHCS
T ss_pred cccCChhhhcccHhHHHHHHHHHHHhCC------CcEEEecc-ccccc----h-------HHHHHHHHHHHHHHhCCCcc
Confidence 11 3456667777777764 23333322 22221 1 1123345666666666433
Q ss_pred --ceeccCCCccccCCCCccccccccccCCCceecCCCCccchhhHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCC
Q 010782 195 --FMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNFRTIKIMVTETGWPSKGSP 272 (501)
Q Consensus 195 --~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n~fda~vDav~~a~~k~g~~~~~vvVsETGWPS~G~~ 272 (501)
+++-.| ..... . .+.+...|+++.-.+++|.|||.-=......
T Consensus 205 dgIG~Q~H-------------------------~~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 205 DGIGLQSH-------------------------FDAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp -EEEEEEE-------------------------EETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred ceechhhc-------------------------cCCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 222222 11100 0 2333345555554579999999864433321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCccc-EEEEeccccc-ccCCCcccceeeeecCCCCeeee
Q 010782 273 KEKAATPDNAQIYNTNLIRHVINDSGTPAKRGEELD-VYIFSLFNEN-RKPGLESERNWGLFYPDQTSVYN 341 (501)
Q Consensus 273 ~~~~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~-~yiF~~FdE~-~K~g~~~E~~wGlf~~d~t~ky~ 341 (501)
.. ....+.|+.+++++++.+.+. | |. .++ +.+..+.|.. |.+... -.+=+||+.|.+||-.
T Consensus 250 ~~-~~~~~~qA~~~~~~~~~~~~~---~--~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 250 PD-AEEEEAQAEYYRDFLTACFSH---P--PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHT---T--HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred cc-hHHHHHHHHHHHHHHHHHHhC---C--cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 11 234667888999999988873 1 01 233 3444455533 554311 2334688888888753
No 85
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=24.50 E-value=4.2e+02 Score=28.44 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCcc
Q 010782 128 SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYA 204 (501)
Q Consensus 128 ~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~ 204 (501)
.+.++..|+.+|++|++.++. +-++.+..... ...| | +.-|++..|++.+-.|=|+.
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~~--ls~av~~~~~~--------~~~~--d--------~~~l~~~vD~inlMtYD~~g 224 (413)
T cd02873 168 KEQFTALVRELKNALRPDGLL--LTLTVLPHVNS--------TWYF--D--------VPAIANNVDFVNLATFDFLT 224 (413)
T ss_pred HHHHHHHHHHHHHHhcccCcE--EEEEecCCchh--------cccc--C--------HHHHhhcCCEEEEEEecccC
Confidence 466888999999999877652 33332111000 0001 1 22467778999999997664
No 86
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.23 E-value=3.2e+02 Score=26.12 Aligned_cols=53 Identities=8% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHcCCCCccEEEee-eccCCCCCCC-CCCCCHHHHHHHHHHHHHHHhh
Q 010782 241 QIDSIYFALMALNFRTIKIMVTE-TGWPSKGSPK-EKAATPDNAQIYNTNLIRHVIN 295 (501)
Q Consensus 241 ~vDav~~a~~k~g~~~~~vvVsE-TGWPS~G~~~-~~~as~~na~~y~~~lv~~~~s 295 (501)
.++..+..+. .++|++||++.| .++|.. ..+ ......+..+...+..++.+.+
T Consensus 79 ~~~~fv~~iR-~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 79 RLDGFVKTIR-EAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp HHHHHHHHHH-TT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 468999999999 455544 333 2456777777777778887754
No 87
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=23.94 E-value=1.3e+02 Score=33.10 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCEEEEecCCCCCh
Q 010782 41 DKVAQLVKQHNIKYLRI-------YD------SNI-------QVLKAFANTGVELMIGIPNSDLL 85 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRl-------Y~------~d~-------~vl~A~a~~gi~V~vGv~n~~~~ 85 (501)
+|=+++||+.|++..|+ +- .|+ +++.+|.+.||+.+|.+.=-+++
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 34478999988877664 31 232 69999999999999999654444
No 88
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=23.56 E-value=1.3e+02 Score=26.18 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCEEEEe--cCC---hHHHHHHHhcCCEEEE
Q 010782 41 DKVAQLVKQHNIKYLRIY--DSN---IQVLKAFANTGVELMI 77 (501)
Q Consensus 41 ~~Vv~llks~~i~~VRlY--~~d---~~vl~A~a~~gi~V~v 77 (501)
+.+.+.++++|++.|+++ +.. ..++++|+.+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 334556777899988888 333 4799999999998754
No 89
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=23.55 E-value=1.7e+02 Score=26.18 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHHhcCCEEEEecCC
Q 010782 38 PTPDKVAQLVKQHNIKYLRIYDSN-----IQVLKAFANTGVELMIGIPN 81 (501)
Q Consensus 38 ps~~~Vv~llks~~i~~VRlY~~d-----~~vl~A~a~~gi~V~vGv~n 81 (501)
.+++++++..++.|++.|=+=|-+ +...+.++..||+|++|+-.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 489999999999999988887664 35667777899999999875
No 90
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=23.15 E-value=7.2e+02 Score=25.17 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-------hHHHHHH---HhcCCEEEEecCCCCCh---hhhhhhhhHHHHHHhhc
Q 010782 36 DLPTPDKVAQLVKQHNIKYLRIYDSN-------IQVLKAF---ANTGVELMIGIPNSDLL---PFAQFQSNADSWLKNSI 102 (501)
Q Consensus 36 nlps~~~Vv~llks~~i~~VRlY~~d-------~~vl~A~---a~~gi~V~vGv~n~~~~---~ia~~~~~A~~Wv~~~v 102 (501)
+.++|.++++.|+..|+++|-+-.+. ..+++.. +..--++.+|-|.=... +-..+......-+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 46899999999999999999999876 2344443 33345899998863210 01122222222233322
Q ss_pred cccCCCCeEEEEEeccccccCCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhh
Q 010782 103 LPYYPAAKITYITVGAEVTESTDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLK 182 (501)
Q Consensus 103 ~~y~p~~~I~~I~VGNEvl~~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~ 182 (501)
..--++..+..+-=||+- .+.. +-..++..|++.++. ++-|+|.+. +| ++.+
T Consensus 136 ~~~~~~~a~vlmGHGt~h------~an~---~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P--------~~~~--- 187 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPH------PANA---AYSALQAMLKKHGYP-NVFVGTVEG-------YP--------SLED--- 187 (262)
T ss_dssp -TT-TTEEEEEEE---SC------HHHH---HHHHHHHHHHCCT-T-TEEEEETTS-------SS--------BHHH---
T ss_pred cccCCCCEEEEEeCCCCC------CccH---HHHHHHHHHHhCCCC-eEEEEEeCC-------CC--------CHHH---
Confidence 211134445555555542 1222 334456778888775 588999863 44 2333
Q ss_pred hHHHHHhhcCCCceeccCCCcccc
Q 010782 183 PLLEFLADNQSPFMIDIYPYYAYR 206 (501)
Q Consensus 183 ~~l~fL~~~~d~~~vNiYPyf~~~ 206 (501)
+++.|.+. .+=-|.+.||.--.
T Consensus 188 -vi~~L~~~-g~k~V~L~PlMlVA 209 (262)
T PF06180_consen 188 -VIARLKKK-GIKKVHLIPLMLVA 209 (262)
T ss_dssp -HHHHHHHH-T-SEEEEEEESSS-
T ss_pred -HHHHHHhc-CCCeEEEEeccccc
Confidence 33444443 24458889988643
No 91
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=28 Score=36.36 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=33.3
Q ss_pred HHhhccccCCCCeEEEEEeccccccCC---C---CChhhHHHHHHHHHHHHH--HcCCCCCeEEeee
Q 010782 98 LKNSILPYYPAAKITYITVGAEVTEST---D---NSSSLVVPAMQNVFTALK--KAGLHKRIKVSST 156 (501)
Q Consensus 98 v~~~v~~y~p~~~I~~I~VGNEvl~~~---~---~~~~~Lv~am~~vk~aL~--~~gl~~~IkVsT~ 156 (501)
+++++..+.||..|++. |+..... + ..+.+++.+|.||..-+. +.-++..+||-.+
T Consensus 133 lkkh~skiaPw~eIdar---~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 133 LKKHFSKIAPWCEIDAR---NMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISS 196 (430)
T ss_pred HHHHHHhhCccceecHH---HhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEec
Confidence 56777777787666654 2222211 0 127789999999876543 3444445666544
No 92
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.45 E-value=3.2e+02 Score=29.46 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHcCCC
Q 010782 129 SLVVPAMQNVFTALKKAGLH 148 (501)
Q Consensus 129 ~~Lv~am~~vk~aL~~~gl~ 148 (501)
+......+.++..|.++|+.
T Consensus 247 ~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 247 DQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCe
Confidence 55566677788889999986
No 93
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.31 E-value=9.4e+02 Score=26.15 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=17.3
Q ss_pred CCCEEEEecC---------ChHHHHHHHhcCCEEEEecCCC
Q 010782 51 NIKYLRIYDS---------NIQVLKAFANTGVELMIGIPNS 82 (501)
Q Consensus 51 ~i~~VRlY~~---------d~~vl~A~a~~gi~V~vGv~n~ 82 (501)
++..||+..- +++++..|++++. +++++-.+
T Consensus 186 hV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~-~~v~~h~n 225 (417)
T TIGR03820 186 HVEVIRIGTRVPVVLPQRITDELVAILKKHHP-VWLNTHFN 225 (417)
T ss_pred CCceEEEeeccccccccccCHHHHHHHHhcCC-eEEEEeCC
Confidence 5666777642 2456666766662 44444443
No 94
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.30 E-value=9.9e+02 Score=25.66 Aligned_cols=76 Identities=9% Similarity=0.110 Sum_probs=41.5
Q ss_pred EEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhh
Q 010782 111 ITYITVGAEVTES-------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKP 183 (501)
Q Consensus 111 I~~I~VGNEvl~~-------~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~ 183 (501)
...+.+|=|-..+ ...+.+....+++.+|+.+ . .+.|++..-. .|| |+- .+-+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~-~i~i~~d~Iv-----GfP---gET----~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV-----P-DASISSDIIV-----GFP---TET----EEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECC---CCC----HHHHHH
Confidence 3566666665442 1245677778888877753 1 3666665322 244 222 233556
Q ss_pred HHHHHhhcCCCceeccCCCccc
Q 010782 184 LLEFLADNQSPFMIDIYPYYAY 205 (501)
Q Consensus 184 ~l~fL~~~~d~~~vNiYPyf~~ 205 (501)
.++|+.+.. +-.+|+++|-.+
T Consensus 312 tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcC-CCEEeeeeccCC
Confidence 677776643 455666655544
No 95
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=21.92 E-value=1.6e+02 Score=32.88 Aligned_cols=75 Identities=17% Similarity=0.349 Sum_probs=47.4
Q ss_pred CCCCccEEEeeeccCCCCCCCC--C-----CCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcccEEEEeccccc-ccCCCc
Q 010782 253 NFRTIKIMVTETGWPSKGSPKE--K-----AATPDNAQIYNTNLIRHVINDSGTPAKRGEELDVYIFSLFNEN-RKPGLE 324 (501)
Q Consensus 253 g~~~~~vvVsETGWPS~G~~~~--~-----~as~~na~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF~~FdE~-~K~g~~ 324 (501)
.|.|.+|.|+|-|-+...+..- . ..=.+..+.|++.+.+.+.. .|- ..--+|+.++-|-. |..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC--
Confidence 4889999999999987644320 1 12244556666666665542 121 12247888888743 6665
Q ss_pred ccceeeeecCC
Q 010782 325 SERNWGLFYPD 335 (501)
Q Consensus 325 ~E~~wGlf~~d 335 (501)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 45789999864
No 96
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=21.38 E-value=1.6e+02 Score=23.46 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=28.1
Q ss_pred hHHHHHHhhccccCCCCeEEEEEeccccccCCC---CChhhHHHHHHHHHHHHHHc
Q 010782 93 NADSWLKNSILPYYPAAKITYITVGAEVTESTD---NSSSLVVPAMQNVFTALKKA 145 (501)
Q Consensus 93 ~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~---~~~~~Lv~am~~vk~aL~~~ 145 (501)
.-..|+.+||.- |+|.+++.+ ...+.|+|+++..++.++..
T Consensus 12 iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 12 ILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 346799887643 455555442 34678999999998888643
No 97
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=21.35 E-value=3.8e+02 Score=28.12 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHcCCC
Q 010782 129 SLVVPAMQNVFTALKKAGLH 148 (501)
Q Consensus 129 ~~Lv~am~~vk~aL~~~gl~ 148 (501)
+.+..-.+-++..|.++|+.
T Consensus 220 ~~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 220 DVLADRYELADARLSAAGFD 239 (375)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 44666777888899999986
No 98
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=21.28 E-value=57 Score=32.27 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCC--CcccEEEEeccccc
Q 010782 241 QIDSIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQIYNTNLIRHVINDSGTPAKRG--EELDVYIFSLFNEN 318 (501)
Q Consensus 241 ~vDav~~a~~k~g~~~~~vvVsETGWPS~G~~~~~~as~~na~~y~~~lv~~~~s~~GTP~rpg--~~i~~yiF~~FdE~ 318 (501)
+.|.+..+|+++|.+.-=+=.+...|- |+. .+ -.|. ..|-|..|| ..+.-.+|.-+|++
T Consensus 36 ~adila~aL~~~gvp~EVlGFtT~aw~--gg~-----------~~----~~w~--~~G~p~~pgrln~l~h~vyk~a~~~ 96 (219)
T PF11775_consen 36 CADILARALERCGVPVEVLGFTTRAWK--GGR-----------SR----EAWL--AAGRPRYPGRLNDLRHIVYKDADTP 96 (219)
T ss_pred HHHHHHHHHHhCCCCeEEEeeecCCcC--Ccc-----------hH----HHHH--hcCCCCCChHHHHHHHHHHHhcCCh
Confidence 578888999998755444445666673 432 00 1122 247788888 34566788888999
Q ss_pred ccCC
Q 010782 319 RKPG 322 (501)
Q Consensus 319 ~K~g 322 (501)
|+.+
T Consensus 97 wrra 100 (219)
T PF11775_consen 97 WRRA 100 (219)
T ss_pred hhhH
Confidence 9853
No 99
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=21.24 E-value=2.8e+02 Score=32.80 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=56.7
Q ss_pred eeEEecCCCCCC---CCHHHH---HHHHHhCCCCEEEEecC--ChHHHHHHHhcCCEEEEecCCCCC--hhhhhhhhhHH
Q 010782 26 IGVCYGRNADDL---PTPDKV---AQLVKQHNIKYLRIYDS--NIQVLKAFANTGVELMIGIPNSDL--LPFAQFQSNAD 95 (501)
Q Consensus 26 ~GvnYg~~~~nl---ps~~~V---v~llks~~i~~VRlY~~--d~~vl~A~a~~gi~V~vGv~n~~~--~~ia~~~~~A~ 95 (501)
-|+|.=+...-+ ...+.+ ++++|+.|+|.||+..- ++.-++.+...||-|+--...... +.-..-.+.+.
T Consensus 303 kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~ 382 (808)
T COG3250 303 RGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVS 382 (808)
T ss_pred eeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHH
Confidence 477766543322 233324 45677899999999832 367888888999999887654321 10001112233
Q ss_pred HHHHhhccc--cCCCCeEEEEEecccccc
Q 010782 96 SWLKNSILP--YYPAAKITYITVGAEVTE 122 (501)
Q Consensus 96 ~Wv~~~v~~--y~p~~~I~~I~VGNEvl~ 122 (501)
.-+++.|.+ .+| .|.-=++|||.-.
T Consensus 383 ~~i~~mver~knHP--SIiiWs~gNE~~~ 409 (808)
T COG3250 383 EEVRRMVERDRNHP--SIIIWSLGNESGH 409 (808)
T ss_pred HHHHHHHHhccCCC--cEEEEeccccccC
Confidence 335555543 345 4778899999643
No 100
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=21.03 E-value=2.6e+02 Score=29.80 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHcCCC
Q 010782 129 SLVVPAMQNVFTALKKAGLH 148 (501)
Q Consensus 129 ~~Lv~am~~vk~aL~~~gl~ 148 (501)
+......+.++..|.++||.
T Consensus 227 ~~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 227 ETTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred HHHHHHHHHHHHHHHHcCCc
Confidence 44555667788999999996
No 101
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.97 E-value=1.2e+02 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=19.0
Q ss_pred CHHHHHHHHHhCC---CCEEEEecCChH
Q 010782 39 TPDKVAQLVKQHN---IKYLRIYDSNIQ 63 (501)
Q Consensus 39 s~~~Vv~llks~~---i~~VRlY~~d~~ 63 (501)
.|++|.++|+.+. =+++||||.|..
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~ 29 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGN 29 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 4678888887653 379999999853
No 102
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=20.87 E-value=2.9e+02 Score=28.05 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEEeccccccCCC--CChhhHHHHHHHHHHHHHHcCCC
Q 010782 111 ITYITVGAEVTESTD--NSSSLVVPAMQNVFTALKKAGLH 148 (501)
Q Consensus 111 I~~I~VGNEvl~~~~--~~~~~Lv~am~~vk~aL~~~gl~ 148 (501)
..-|+||+|+|...- ..++.|. +.|...|+.
T Consensus 4 a~iI~vG~ElL~G~ivdtNa~~la-------~~L~~~G~~ 36 (255)
T COG1058 4 AEIIAVGDELLSGRIVDTNAAFLA-------DELTELGVD 36 (255)
T ss_pred EEEEEEccceecCceecchHHHHH-------HHHHhcCce
Confidence 567999999998652 2344443 567778874
No 103
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=20.71 E-value=5.2e+02 Score=27.58 Aligned_cols=131 Identities=14% Similarity=0.215 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccc--cchhhhhhhHHHHHhhcCCCceeccCCCccc
Q 010782 128 SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFN--SSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (501)
Q Consensus 128 ~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~--~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~ 205 (501)
.+.+...+++.|+. .||++.-....-|...+. .|. ++.-+-++.+++.|.+.+=-++++++|+...
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~~----~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGYG----DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTTB----TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred HHHHHHHHHHHHHc--------CCCccceecccccccccc----ccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 55666666665542 477777665544543221 222 1111225678888999999999999998875
Q ss_pred cCCCCccccccccccCCCceecCCCCccchhhHHHHHHHHHHHHHHcCC----CCccEEEeeeccCCCCCCCCCCCCHHH
Q 010782 206 RDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSIYFALMALNF----RTIKIMVTETGWPSKGSPKEKAATPDN 281 (501)
Q Consensus 206 ~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n~fda~vDav~~a~~k~g~----~~~~vvVsETGWPS~G~~~~~~as~~n 281 (501)
... +|.. ++ .++..|+ ++-...+++. ||-.+. -..-+-..
T Consensus 110 ~~~------~~~~-------------------~~--------~~~~~~~~v~~~~g~~~~~~~-w~g~~~--~~Dftnp~ 153 (441)
T PF01055_consen 110 DSP------DYEN-------------------YD--------EAKEKGYLVKNPDGSPYIGRV-WPGKGG--FIDFTNPE 153 (441)
T ss_dssp TTT------B-HH-------------------HH--------HHHHTT-BEBCTTSSB-EEEE-TTEEEE--EB-TTSHH
T ss_pred CCC------cchh-------------------hh--------hHhhcCceeecccCCcccccc-cCCccc--ccCCCChh
Confidence 321 1111 11 1122222 2335677777 883321 12345556
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCcccEEEEec
Q 010782 282 AQIYNTNLIRHVINDSGTPAKRGEELDVYIFSL 314 (501)
Q Consensus 282 a~~y~~~lv~~~~s~~GTP~rpg~~i~~yiF~~ 314 (501)
++.++.+.++.+.+. .+++.++..+
T Consensus 154 a~~w~~~~~~~~~~~--------~Gvdg~w~D~ 178 (441)
T PF01055_consen 154 ARDWWKEQLKELLDD--------YGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHHHTT--------ST-SEEEEES
T ss_pred HHHHHHHHHHHHHhc--------cCCceEEeec
Confidence 888887777777652 2678887754
No 104
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.67 E-value=1.2e+03 Score=25.97 Aligned_cols=144 Identities=9% Similarity=0.172 Sum_probs=69.5
Q ss_pred ecCCCCCCCCHHHHHH---HHHhCCCCEEEEecCC---------------hHHHHHHHhcCCE-EEEecCCCCChhhhhh
Q 010782 30 YGRNADDLPTPDKVAQ---LVKQHNIKYLRIYDSN---------------IQVLKAFANTGVE-LMIGIPNSDLLPFAQF 90 (501)
Q Consensus 30 Yg~~~~nlps~~~Vv~---llks~~i~~VRlY~~d---------------~~vl~A~a~~gi~-V~vGv~n~~~~~ia~~ 90 (501)
+|+..+ -++++|++ .|...|++.|.+.+.| .++|+++.+.++. +-++..++. .+..+
T Consensus 235 rG~~Rs--r~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~--~i~de 310 (509)
T PRK14327 235 RGKERS--RRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPR--DFDDH 310 (509)
T ss_pred CCCCee--CCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcc--cCCHH
Confidence 444433 35688865 3445688888886532 2466666665552 333322221 11111
Q ss_pred hhhHHHHHHhhccccCCCCeEEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeeccccccc
Q 010782 91 QSNADSWLKNSILPYYPAAKITYITVGAEVTES-------TDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLS 163 (501)
Q Consensus 91 ~~~A~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~-------~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~ 163 (501)
+.+.+... + ..+..|.+|=|-..+ ...+.+..+.+++.+|+++. .|.++|..-.
T Consensus 311 -------li~~m~~~-g-~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p------~i~i~tdiIv---- 371 (509)
T PRK14327 311 -------LIEVLAKG-G-NLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP------NVALTTDIIV---- 371 (509)
T ss_pred -------HHHHHHhc-C-CccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC------CcEEeeeEEE----
Confidence 11112111 1 123456666544331 23457788888888887642 3555554322
Q ss_pred ccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCccc
Q 010782 164 RSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (501)
Q Consensus 164 ~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~ 205 (501)
.|| |.-.+ -+...++|+.+. .+-.+++|+|--.
T Consensus 372 -GfP---gET~e----df~~Tl~~v~~l-~~d~~~~f~yspr 404 (509)
T PRK14327 372 -GFP---NETDE----QFEETLSLYREV-GFDHAYTFIYSPR 404 (509)
T ss_pred -eCC---CCCHH----HHHHHHHHHHHc-CCCeEEEeeeeCC
Confidence 244 22222 244556666554 3344566655443
No 105
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.65 E-value=8.3e+02 Score=24.12 Aligned_cols=70 Identities=10% Similarity=0.240 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC---hHHHHHHHh--cCCEEEEecCCCCChhhhhhhhhHHHHHHhhccccCCCCeEE
Q 010782 38 PTPDKVAQLVKQHNIKYLRIYDSN---IQVLKAFAN--TGVELMIGIPNSDLLPFAQFQSNADSWLKNSILPYYPAAKIT 112 (501)
Q Consensus 38 ps~~~Vv~llks~~i~~VRlY~~d---~~vl~A~a~--~gi~V~vGv~n~~~~~ia~~~~~A~~Wv~~~v~~y~p~~~I~ 112 (501)
.||+|+.+-++ .|.+.||+|=++ +.-++++++ .+++++-. ..+. .+.++...|++. .+.
T Consensus 120 ~TpsEi~~A~~-~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~pt---GGV~---~~~~n~~~yl~a---------Ga~ 183 (222)
T PRK07114 120 GSLSEIGYAEE-LGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPT---GGVE---PTEENLKKWFGA---------GVT 183 (222)
T ss_pred CCHHHHHHHHH-CCCCEEEECcccccCHHHHHHHhccCCCCeEEeC---CCCC---cchhcHHHHHhC---------CCE
Confidence 48999998886 599999999665 678888886 46666542 2221 111234667652 356
Q ss_pred EEEeccccccC
Q 010782 113 YITVGAEVTES 123 (501)
Q Consensus 113 ~I~VGNEvl~~ 123 (501)
++.+|+..+..
T Consensus 184 avg~Gs~L~~~ 194 (222)
T PRK07114 184 CVGMGSKLIPK 194 (222)
T ss_pred EEEEChhhcCc
Confidence 77888876643
No 106
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.63 E-value=1.1e+03 Score=25.60 Aligned_cols=198 Identities=14% Similarity=0.193 Sum_probs=93.6
Q ss_pred EecCCCCCCCCHHHHHH---HHHhCCCCEEEEecCC-----------hHHHHHHHh-cCC-EEEEecCCCCChhhhhhhh
Q 010782 29 CYGRNADDLPTPDKVAQ---LVKQHNIKYLRIYDSN-----------IQVLKAFAN-TGV-ELMIGIPNSDLLPFAQFQS 92 (501)
Q Consensus 29 nYg~~~~nlps~~~Vv~---llks~~i~~VRlY~~d-----------~~vl~A~a~-~gi-~V~vGv~n~~~~~ia~~~~ 92 (501)
.+|++.+ -++++|++ .|...|+..|.+.+-| .+.|+++.+ .++ .+-++..+.. .+..+
T Consensus 176 ~rG~~rs--r~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~~~~e-- 249 (449)
T PRK14332 176 TRGRERS--RDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPK--DFPDH-- 249 (449)
T ss_pred ccCCccc--CCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcc--cCCHH--
Confidence 3555533 36788865 3445799999988654 234555433 232 2333333221 11111
Q ss_pred hHHHHHHhhccccCCCCeEEEEEeccc-----ccc--CCCCChhhHHHHHHHHHHHHHHcCCCCCeEEeeeccccccccc
Q 010782 93 NADSWLKNSILPYYPAAKITYITVGAE-----VTE--STDNSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRS 165 (501)
Q Consensus 93 ~A~~Wv~~~v~~y~p~~~I~~I~VGNE-----vl~--~~~~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s 165 (501)
+.+.+... + ....+|.+|=| +|- +...+.++...+++.+|++.. .+.++|..-. .
T Consensus 250 -----ll~~m~~~-~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~Iv-----G 311 (449)
T PRK14332 250 -----LLSLMAKN-P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDIIV-----G 311 (449)
T ss_pred -----HHHHHHhC-C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEEEe-----e
Confidence 11111111 1 12456777733 332 123567888889988887642 3555543221 2
Q ss_pred CCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCccccCCCCccccccccccCCCceecCCCCccchhhHHHHHHHH
Q 010782 166 FPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAYRDSPNNVSLDYALFQSSSEVIDPNTGLLYTNMFDAQIDSI 245 (501)
Q Consensus 166 ~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~g~~d~~~~~~Y~n~fda~vDav 245 (501)
|| |+-.+| +...++|+.+. .|-.+++|+|--..+.+. +..+.. .+.+.....++..+.+-|-.-.
T Consensus 312 fP---gET~ed----f~~tl~~v~~l-~~~~~~~f~ys~~~GT~a-----~~~~~~--~v~~~~~~~R~~~l~~~~~~~~ 376 (449)
T PRK14332 312 FP---NETEEE----FEDTLAVVREV-QFDMAFMFKYSEREGTMA-----KRKLPD--NVPEEVKSARLTKLVDLQTSIS 376 (449)
T ss_pred CC---CCCHHH----HHHHHHHHHhC-CCCEEEEEEecCCCCChh-----HHhCcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 44 222333 44556666543 455667776554433221 111111 1222222234455555444433
Q ss_pred HHHHHHcCCCCccEEEeeec
Q 010782 246 YFALMALNFRTIKIMVTETG 265 (501)
Q Consensus 246 ~~a~~k~g~~~~~vvVsETG 265 (501)
....++.-....+|+|.|.+
T Consensus 377 ~~~~~~~vG~~~~vlve~~~ 396 (449)
T PRK14332 377 HEQNRARIGRVYSILIENTS 396 (449)
T ss_pred HHHHHHhcCCEEEEEEEecc
Confidence 33344432356888887644
No 107
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=20.61 E-value=9.1e+02 Score=25.21 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCC
Q 010782 128 SSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPY 202 (501)
Q Consensus 128 ~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPy 202 (501)
...+...++.++..|++..- ..+|+|-.-.. +.. ..| .. .+++..|++..|.||.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~-~~~---------~~d---~~-----~~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDP--DHPVTTNFMGS-WFN---------GID---YF-----KWAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-EEE-EE-TT-------------SS----HH-----HHGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEeCcccc-ccC---------cCC---HH-----HHHhhCCcceeccccC
Confidence 45678888899999998863 47788753221 000 011 11 2467789999999987
No 108
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.47 E-value=2.4e+02 Score=27.47 Aligned_cols=51 Identities=8% Similarity=-0.027 Sum_probs=38.9
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC---C-hHHHHHHHhcCCEEEE
Q 010782 26 IGVCYGRNADDLPTPDKVAQLVKQHNIKYLRIYDS---N-IQVLKAFANTGVELMI 77 (501)
Q Consensus 26 ~GvnYg~~~~nlps~~~Vv~llks~~i~~VRlY~~---d-~~vl~A~a~~gi~V~v 77 (501)
++||+.....+ .+-+++++.+++.|++.|-++.. + .++.+.++++||+|..
T Consensus 3 ~~~~~~~~~~~-~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTE-LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcC-CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 56887765545 36789999999999999999742 2 3577778899999763
No 109
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.26 E-value=8.3e+02 Score=26.16 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=34.2
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCCCeEEeeecccccccccCCCCCcccccchhhhhhhHHHHHhhcCCCceeccCCCccc
Q 010782 126 NSSSLVVPAMQNVFTALKKAGLHKRIKVSSTHSLGVLSRSFPPSAGAFNSSHAHFLKPLLEFLADNQSPFMIDIYPYYAY 205 (501)
Q Consensus 126 ~~~~~Lv~am~~vk~aL~~~gl~~~IkVsT~~~~~~~~~s~pPS~g~F~~~~~~~i~~~l~fL~~~~d~~~vNiYPyf~~ 205 (501)
.+.+.++.+++.+|++. . .+.|++..-. .|| |+- .+-+...++|+.+. .+-.+++++|--+
T Consensus 267 ~~~~~~~~~i~~l~~~~----~--~i~i~~~~I~-----G~P---gET----~e~~~~t~~fl~~~-~~~~~~~~~~sp~ 327 (430)
T TIGR01125 267 GSGEQQLDFIERLREKC----P--DAVLRTTFIV-----GFP---GET----EEDFQELLDFVEEG-QFDRLGAFTYSPE 327 (430)
T ss_pred CCHHHHHHHHHHHHHhC----C--CCeEeEEEEE-----ECC---CCC----HHHHHHHHHHHHhc-CCCEEeeeeccCC
Confidence 45677888888877653 1 2445543211 233 111 23355677787664 4556777776654
No 110
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=20.19 E-value=4.2e+02 Score=23.45 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC----------hHHHHHHHhcCCEEEEecCC
Q 010782 36 DLPTPDKVAQLVKQHNIKYLRIYDSN----------IQVLKAFANTGVELMIGIPN 81 (501)
Q Consensus 36 nlps~~~Vv~llks~~i~~VRlY~~d----------~~vl~A~a~~gi~V~vGv~n 81 (501)
..|++.+.++-|...|+++|.+-... +..+..++...+++.+|-|.
T Consensus 54 ~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pL 109 (127)
T cd03412 54 EVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPL 109 (127)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCC
Confidence 45888888888877888888876543 23444444445666666554
Done!