BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010783
(501 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB00|PHR_ARATH Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1
PE=2 SV=1
Length = 496
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/485 (75%), Positives = 418/485 (86%), Gaps = 15/485 (3%)
Query: 8 STAVQPGRIRVLKQGS---LDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVA 64
+ +VQPGRIR+LK+GS LD+ GPVVYWMFRDQR++DNWALIHAVD AN+ N PVAV
Sbjct: 4 TVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVV 63
Query: 65 FNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124
FNLFDQFL AKARQLGFML+GLR L I+ + QI FFL QG+A++ IPNF+ ECGAS L
Sbjct: 64 FNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASHL 122
Query: 125 VTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL 184
VTDFSPLREIRRCKD++ R SDS+ IHEVDAHNVVP+W AS KLEYSA+T+RGKINKLL
Sbjct: 123 VTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLL 182
Query: 185 PEYLIDYPMLEQPIEKWTGT--RQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242
P+YLI++P LE P +KWTG ++ +DWDS+I V+R+GAEVPEI WC GEDA +EVL
Sbjct: 183 PDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLM 242
Query: 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLY 302
G+KDGFLTKRLKNY TDRNNP+KP+ALSGLSPYLHFGQ+SAQRCALEARK R P+
Sbjct: 243 GNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQ--- 299
Query: 303 LPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTK 362
A+DTFLEELIVRREL+DNFC+YQP+YDSLKGAWEWARKSL DHASDKREHIY+
Sbjct: 300 ------AVDTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSL 353
Query: 363 EQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYE 422
EQ EK TADPLWNASQ+EMVY GKMHGFMRMYWAKKILEWT GPEEAL+I+IYLN+KYE
Sbjct: 354 EQLEKGLTADPLWNASQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYE 413
Query: 423 IDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRIVGG 482
IDGRDP+GYVGCMWSICGVHDQGWKERPVFGKIRYMNY+GCKRKF+VD YI+YVK +V
Sbjct: 414 IDGRDPSGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSV 473
Query: 483 TKKRR 487
TKK+R
Sbjct: 474 TKKKR 478
>sp|Q6F6A2|PHR_ORYSJ Deoxyribodipyrimidine photo-lyase OS=Oryza sativa subsp. japonica
GN=PHR PE=1 SV=1
Length = 506
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 314/500 (62%), Positives = 371/500 (74%), Gaps = 25/500 (5%)
Query: 3 SLTPPSTA--------VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQA 54
S++PP TA P R+RV+ G VVYWM RDQR+ DNWAL+HA A
Sbjct: 5 SVSPPRTAPGPANPSPAHPSRVRVIHPGGGKPGGP-VVYWMLRDQRLADNWALLHAAGLA 63
Query: 55 NKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNI 112
+ P+AVAF LF + L A+ RQLGF+LRGLR L + F G AE I
Sbjct: 64 AASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAADAAARHLPFFLFTGGPAE--I 121
Query: 113 PNFVRECGASLLVTDFSPLREIRRCKDKICN---RVSDSVTIHEVDAHNVVPVWVASEKL 169
P VR GAS LV DFSPLR +R D + R + V +H+VDAHNVVPVW AS K+
Sbjct: 122 PALVRRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM 181
Query: 170 EYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGW 229
EYSAKT RGK++K++ EYL+++P L + + +DWD++IA V + VPEI W
Sbjct: 182 EYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDREQPEGVDWDALIARVCSEAENVPEIDW 241
Query: 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALE 289
CE GE+AA+E L GSKDGFLTKR+K+Y TDRN+P KPRALSGLSPYLHFG ISAQRCALE
Sbjct: 242 CEPGEEAAIEALLGSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALE 301
Query: 290 ARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLK 349
A+K R L P K++D FLEEL+VRRELADNFC+YQP YDSL GAWEWARK+L
Sbjct: 302 AKKCRHLSP---------KSVDAFLEELVVRRELADNFCYYQPQYDSLSGAWEWARKTLM 352
Query: 350 DHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEE 409
DHA+DKREHIYT+EQ E A+T DPLWNASQ+EMV++GKMHGFMRMYWAKKILEWT+GPEE
Sbjct: 353 DHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEE 412
Query: 410 ALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 469
AL+ AIYLNDKYEIDGRDP+GYVGCMWSICG+HDQGWKERPVFGKIRYMNY+GCKRKFDV
Sbjct: 413 ALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDV 472
Query: 470 DGYIAYVKRIVGGTKKRRAD 489
D YI+YVKR+ G +KKR A+
Sbjct: 473 DAYISYVKRLAGQSKKRNAE 492
>sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus GN=phr PE=2
SV=1
Length = 556
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/451 (49%), Positives = 306/451 (67%), Gaps = 22/451 (4%)
Query: 19 LKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQ 78
+KQGS +YWM RDQRV+DNWALI+A A +P+ + F L ++L A RQ
Sbjct: 103 IKQGS-----DGFLYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATYRQ 157
Query: 79 LGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCK 138
FML+GL+ + + + + I F L GE N+P+FV + +VTDF+PLR +
Sbjct: 158 YAFMLKGLQEVAKECK-SLDIQFHLLSGEPGQNLPSFVEKWKFGAVVTDFNPLRIPLQWI 216
Query: 139 DKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPI 198
+ + + V +VDAHNVVP W AS KLEY A+T+RGKI KLLPE+L + P+++
Sbjct: 217 ETVKKHLPADVPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHP 276
Query: 199 EKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258
+ + +DW+ ++++ L V E+ W + G M +L + F+ +RL+ + T
Sbjct: 277 HSASRAAEPVDWEEVLSS-LEVERSVGEVDWAQPGTSGGMNML----ESFIDQRLRLFAT 331
Query: 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELI 318
RNNP ALS LSP++H GQ+SAQR + ++ + +++ +F+EEL+
Sbjct: 332 HRNNP-NYDALSHLSPWIHTGQLSAQRVVKQVKREKNAS----------ESVASFIEELV 380
Query: 319 VRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNAS 378
VRRELADNFCFY P+YD++ GA++WA+K+L+DHA D R+++YTKEQ E A+T D LWNA+
Sbjct: 381 VRRELADNFCFYNPSYDNISGAYDWAKKTLQDHAKDSRQYLYTKEQLENAKTHDQLWNAA 440
Query: 379 QMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI 438
Q ++V GKMHGF+RMYWAKKILEWT PEEAL+IAIYLND+ +DG DPNGYVGCMWSI
Sbjct: 441 QRQLVSEGKMHGFLRMYWAKKILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSI 500
Query: 439 CGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 469
CG+HDQGW ERP+FGKIR+MNY+GCKRKFDV
Sbjct: 501 CGIHDQGWAERPIFGKIRFMNYAGCKRKFDV 531
>sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorous tridactylus GN=PHR
PE=2 SV=1
Length = 532
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/460 (49%), Positives = 299/460 (65%), Gaps = 25/460 (5%)
Query: 15 RIRVLKQG-SLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG 73
R+R++ Q L + VYWM RDQRV+DNWA ++A A K +P+ V F L FLG
Sbjct: 82 RVRLISQDCHLQDQSQAFVYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLG 141
Query: 74 AKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLRE 133
A R FMLRGL + E+ I F L G +D +P FV+ G +VTDFSPL
Sbjct: 142 ATIRHYDFMLRGLEEVAEECEK-LCIPFHLLLGLPKDVLPAFVQTHGIGGIVTDFSPLLH 200
Query: 134 IRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLIDYPM 193
+ + + + V +VDAHN+VP WVAS+K EY A+T+R KI+ LP +L ++P
Sbjct: 201 HTQWVKDVQDALPRQVPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFP- 259
Query: 194 LEQPI--EKWTGTRQS--IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFL 249
P+ +T Q+ +DW+ A L+ V E+ W + G + + +L+ F+
Sbjct: 260 ---PVICHPYTSNVQAEPVDWNGCRAG-LQVDRSVKEVSWAKPGTASGLTMLQS----FI 311
Query: 250 TKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKA 309
+RL + +DRNNP K ALS LSP+ HFGQ+S QR LE +K R P+ +
Sbjct: 312 AERLPYFGSDRNNPNKD-ALSNLSPWFHFGQVSVQRAILEVQKHRSRYPD---------S 361
Query: 310 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQ 369
+ F+EE +VRRELADNFCFY NYD L+GA++WA+ +L+ HA DKR H+Y+ EQ E +
Sbjct: 362 VTNFVEEAVVRRELADNFCFYNKNYDKLEGAYDWAQTTLRLHAKDKRPHLYSLEQLESGK 421
Query: 370 TADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLNDKYEIDGRDPN 429
T DPLWNA+QM+ V GKMHGF+RMYWAKKILEWT PEEAL AIYLND++++DG DPN
Sbjct: 422 THDPLWNAAQMQTVKEGKMHGFLRMYWAKKILEWTRSPEEALEFAIYLNDRFQLDGWDPN 481
Query: 430 GYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 469
GYVGCMWSICG+HDQGW ER +FGKIRYMNY+GCKRKFDV
Sbjct: 482 GYVGCMWSICGIHDQGWAEREIFGKIRYMNYAGCKRKFDV 521
>sp|P58818|PHR_METTM Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=phr PE=1 SV=2
Length = 444
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 187/492 (38%), Positives = 259/492 (52%), Gaps = 74/492 (15%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L + V+YWM R N AL +A++ AN + P+ V F L D+
Sbjct: 2 IHDERIRSLNTEKPARDGKYVIYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDE 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130
F A +R F++ GLR ++ + + + GA L+V + P
Sbjct: 62 FPNANSRHYRFLIEGLR-----------------------DVGDALMKRGARLVVENERP 98
Query: 131 LREIRRCKDKICNRVSD------------------SVTIHEVDAHNVVPVWVASEKLEYS 172
+ R D+ V D V + +V+++ +VPV AS K EYS
Sbjct: 99 PSAVMRYSDEASAVVVDRGYLDIQKEWVDELAESLHVPLMQVESNVIVPVETASPKEEYS 158
Query: 173 AKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWD-----SIIAAVLRKGAEVPEI 227
A T R KI + L +++ P+++ S+D D + + R E+ E
Sbjct: 159 AGTFRPKITRELERFMV-------PLKERRLAVDSLDLDPGPDLNDVTGKFRASEEL-EP 210
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G A+ + D FL+++L + RN+P+K LS +SPYLHFG IS A
Sbjct: 211 SIFSGGASEAIRLF----DEFLSEKLACFEKYRNDPVK-NCLSNMSPYLHFGHISPLYLA 265
Query: 288 LEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKS 347
++A K + CPE FLEELIVRREL+ NF Y NY S++ EWA+K+
Sbjct: 266 MKASKTGE-CPE-------------FLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKT 311
Query: 348 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGP 407
L +HA D +E+ YT +FE+A+T DP WNA+Q EMV GKMHG+MRMYW KKILEWT P
Sbjct: 312 LMEHARDPKEYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRMYWGKKILEWTDHP 371
Query: 408 EEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKF 467
E A IAIYLNDKYEIDGRDPNG+ G W G HD+ W ER +FGK+RYMN G +RKF
Sbjct: 372 ERAYDIAIYLNDKYEIDGRDPNGFTGVAWCF-GKHDRAWAEREIFGKVRYMNDRGLERKF 430
Query: 468 DVDGYIAYVKRI 479
+ Y+ V+ +
Sbjct: 431 RIGEYVRRVQEL 442
>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=phr PE=3 SV=2
Length = 445
Score = 295 bits (754), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 187/481 (38%), Positives = 261/481 (54%), Gaps = 50/481 (10%)
Query: 11 VQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ 70
+ RIR L D + VVYWM R N AL +A++ AN P+ V F L D
Sbjct: 2 IHAERIRNLNGEEPDLRGSYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDD 61
Query: 71 FLGAKARQLGFMLRGLRLLQRNIEET-FQILFFLFQGEAEDNIPNFVRE--CGASLLVTD 127
F A +R F++ GLR ++ N+ E Q++ D+ P+ + + A+ VTD
Sbjct: 62 FPNANSRHYRFLIEGLRDVRSNLRERGIQLVV------ERDSPPSVLLKYADDAAAAVTD 115
Query: 128 FSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEY 187
L + D+ + + + +V+++ +VPV AS+K EYSA T + KI + L +
Sbjct: 116 RGYLDIQKEWVDEAAGALH--IPLTQVESNVIVPVETASDKEEYSAGTFKPKIKRHLKRF 173
Query: 188 LIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPE-IGWCESGEDAAMEVLKGSKD 246
++ P+ T S+D L G E + + + ED V +G
Sbjct: 174 MV-------PLRMRTLKMDSLD--------LEPGPEFEDAVRDFRAPEDLEPSVFRGGTS 218
Query: 247 G-------FLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPE 299
FL ++L+ + RN+P+K LS +SPYLHFGQIS AL A +A + CPE
Sbjct: 219 TALSIFSEFLREKLECFERYRNDPVK-NCLSNMSPYLHFGQISPLYLALRASEAGE-CPE 276
Query: 300 LLYLPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHI 359
FLEELIVRREL+ NF Y +Y S+ EWA+++L DH +D RE+
Sbjct: 277 -------------FLEELIVRRELSMNFVHYSDSYSSISCLPEWAQRTLMDHVADPREYE 323
Query: 360 YTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILEWTTGPEEALAIAIYLND 419
Y+ + E A T DP WNA+Q EMV GKMHG+MRMYW KKILEWT P A IA+YLND
Sbjct: 324 YSLRELESASTHDPYWNAAQQEMVITGKMHGYMRMYWGKKILEWTDHPARAYDIALYLND 383
Query: 420 KYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDGYIAYVKRI 479
+YEIDGRDPNG+ G W G HD+ W ER +FGK+RYMN G KRKF +D Y+ ++ +
Sbjct: 384 RYEIDGRDPNGFAGVAWCF-GKHDRAWAEREIFGKVRYMNDRGLKRKFRIDEYVDRIRGL 442
Query: 480 V 480
+
Sbjct: 443 M 443
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 113/512 (22%), Positives = 190/512 (37%), Gaps = 118/512 (23%)
Query: 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLR 84
P+++W RD R+ DN L A Q+ + + F L Q L A AR + ++
Sbjct: 3 APILFWHRRDLRLSDNIGLAAARAQSAQ----LIGLFCLDPQILQSADMAPAR-VAYLQG 57
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLV--TDFSP------------ 130
L+ LQ+ ++ L L QG+ + IP ++ A + D P
Sbjct: 58 CLQELQQRYQQAGSRLLLL-QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAA 116
Query: 131 -----LREIR------RCKDKICNRVSDSVTIHEVDAHN------VVPVWVASEKLEYSA 173
+R ++ D+I + + +++ N PV +E ++ S
Sbjct: 117 LKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSP 176
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESG 233
+ L + P L + P L+Q DWD E G
Sbjct: 177 EQL----TAIAPLLLSELPTLKQ---------LGFDWDGGFP--------------VEPG 209
Query: 234 EDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKA 293
E AA+ L+ F + + +Y RN P + SGLSP L FG I ++ A A
Sbjct: 210 ETAAIARLQE----FCDRAIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWRAASAA 264
Query: 294 RKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQPN-----YDSLKGAWEWARKSL 348
L +I + +EL RE + ++ P+ Y SL + W
Sbjct: 265 HALSRS----DEARNSIRVWQQEL-AWREFYQHALYHFPSLADGPYRSLWQQFPW----- 314
Query: 349 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAK-----KILEW 403
+ RE ++T + +AQT P+ +A+ ++ G MH M A I++W
Sbjct: 315 -----ENREALFTA--WTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDW 367
Query: 404 TTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGC 463
G + + ++ +DG G WS G +P +R N +
Sbjct: 368 RRGEQFFM--------QHLVDGDLAANNGGWQWSASS----GMDPKP----LRIFNPASQ 411
Query: 464 KRKFDVDGYIAYVKRIVGGTKKRRADSLVSGK 495
+KFD Y+KR + + L+SG+
Sbjct: 412 AKKFDATA--TYIKRWLPELRHVHPKDLISGE 441
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 96/249 (38%), Gaps = 48/249 (19%)
Query: 228 GWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCA 287
G GE+A +++ +L + +Y D ++ L A S LSP+LHFG +SA
Sbjct: 195 GLARGGEEAGRKLVTS----WLNGPMADY-EDGHDDLAGDATSRLSPHLHFGTVSAAELV 249
Query: 288 LEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKS 347
AR+ L E + F +++ R A ++ Y+P +D W +
Sbjct: 250 HRAREKGGLGGEAFVRQLAWR---DFHHQVLADRPDA-SWSDYRPRHD------RWRSDA 299
Query: 348 LKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKI-----LE 402
+ HA ++ T PL +A+ ++ + G MH RM A + ++
Sbjct: 300 DEMHA------------WKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLYVD 347
Query: 403 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSG 462
W G L + +DG N + W V G RP R +N
Sbjct: 348 WREGARHFLDLL--------VDGDVANNQLNWQW----VAGTGTDTRP----NRVLNPVI 391
Query: 463 CKRKFDVDG 471
++FD G
Sbjct: 392 QGKRFDARG 400
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKAR---QLGFMLR 84
R VV+W D R+ DN +L A +A + VP+ + L + L A R ++ FMLR
Sbjct: 134 RQAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLR 193
Query: 85 GLRLLQRNIEETFQILFFLFQGEAEDNIPNFVREC----GASLL 124
L +L+ ++E+ I ++ E +P ++E GAS L
Sbjct: 194 TLEVLKTDLED-LGIPLWVETVEKRKEVPTKIKELMKSWGASHL 236
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Query: 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK 295
A E ++ F +R+++Y R+ P + S LSPYL G +SA++C
Sbjct: 204 ADFETVRAQLRDFCRERVQDYHQARDFPAR-EGTSSLSPYLAIGVLSARQCVAR------ 256
Query: 296 LCPELLYLPATL----KAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDH 351
LY +++ + +L ELI RE + +PN + EW
Sbjct: 257 -----LYHESSMGELSEGAQVWLSELIW-REFYQHLVAIEPNLSKSRDFVEWGA------ 304
Query: 352 ASDKREHIYTKEQFE---KAQTADPLWNASQMEMVYNGKMHGFMRM 394
+ E E+F+ + +T P+ +A+ ++ G MH +RM
Sbjct: 305 ---RLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 229 WCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCAL 288
W GE+ A++ L+ F KRL Y +R+ P S LSPY+ G +S+
Sbjct: 206 WSAIGEEHAIKRLQM----FTKKRLSGYKANRDFP-SITGTSRLSPYIKTGAVSS----- 255
Query: 289 EARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSL 348
R + +L A + +TFL+EL R+ FY+P+ + E R+
Sbjct: 256 -----RSIYYHILNAEADSYSAETFLKEL-AWRDFYRMVHFYEPDCKD-REIMEGYRELN 308
Query: 349 KDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRM 394
H D +++ +T P+ +A +++ G MH +RM
Sbjct: 309 WSHDQDDLT------SWKRGETGFPIVDAGMRQLLNEGWMHNRLRM 348
>sp|Q5ZK35|MET14_CHICK Methyltransferase-like protein 14 OS=Gallus gallus GN=METTL14 PE=2
SV=1
Length = 459
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------ISKSNTPPMYLQADLEAFDI 179
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L LE P+E++ T + WD I+ E+ EI
Sbjct: 180 RELKSKFDVIL---------LEPPLEEYYRETGITANEKCWTWDDIMK------LEIEEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFVFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|A4IFD8|MET14_BOVIN Methyltransferase-like protein 14 OS=Bos taurus GN=METTL14 PE=2
SV=1
Length = 456
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|Q3UIK4|MET14_MOUSE Methyltransferase-like protein 14 OS=Mus musculus GN=Mettl14 PE=2
SV=1
Length = 456
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|Q5R5N4|MET14_PONAB Methyltransferase-like protein 14 OS=Pongo abelii GN=METTL14 PE=2
SV=1
Length = 456
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|Q9HCE5|MET14_HUMAN Methyltransferase-like protein 14 OS=Homo sapiens GN=METTL14 PE=1
SV=2
Length = 456
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 46/173 (26%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ LRE+ R KD++ + N P+++ ++ +
Sbjct: 132 NFIRDVGLADRFEEYPKLRELIRLKDEL------------IAKSNTPPMYLQADIEAFD- 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKW------TGTRQSIDWDSIIAAVLRKGAEVPEI 227
I +L P++ D +LE P+E++ T + WD I+ E+ EI
Sbjct: 179 ------IRELTPKF--DVILLEPPLEEYYRETGITANEKCWTWDDIMK------LEIDEI 224
Query: 228 G--------WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K G+ +R ++ T++NNP K + L
Sbjct: 225 AAPRSFIFLWCGSGEGLDLGRVCLRKWGY--RRCEDICWIKTNKNNPGKTKTL 275
>sp|Q6NZ22|MET14_DANRE Methyltransferase-like protein 14 OS=Danio rerio GN=mettl14 PE=2
SV=1
Length = 455
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 34/167 (20%)
Query: 114 NFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSA 173
NF+R+ G + ++ RE+ R KD++ + A N P+++ ++ +
Sbjct: 131 NFIRDGGLADRFEEYPKQRELIRLKDEL------------ISATNTPPMYLQADPDTFDL 178
Query: 174 KTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSI------DWDSIIAAVLRKGAEVPEI 227
+ L+ K + +L +E P+E++ I +WD I+ + + + +
Sbjct: 179 RELKCKFDVIL---------IEPPLEEYYRESGIIANERFWNWDDIMKLNIEEISSIRSF 229
Query: 228 G--WCESGEDAAMEVLKGSKDGFLTKRLKN---YPTDRNNPLKPRAL 269
WC SGE + + K GF +R ++ T++NNP K + L
Sbjct: 230 VFLWCGSGEGLDLGRMCLRKWGF--RRCEDICWIKTNKNNPGKTKTL 274
>sp|Q821E2|FOLKP_CHLCV Folate synthesis bifunctional protein OS=Chlamydophila caviae
(strain GPIC) GN=folKP PE=3 SV=1
Length = 447
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 8/139 (5%)
Query: 119 CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD---AHNVVPVWVASEKLEYSAKT 175
C +++ FSP + + N +SD E AH + +++ +
Sbjct: 166 CPQEMILNSFSPNTLLMGVVNVTDNSISDEGLYLEASKAVAHAEKLFAQGASVIDFGGQA 225
Query: 176 LRGKINKLL---PEYLIDYPMLEQPIEKWTGTRQ--SIDWDSIIAAVLRKGAEVPEIGWC 230
K+ +LL E+ P+L+ EKW G RQ I D+ ++++ E+ I W
Sbjct: 226 TNPKVQQLLNVEQEWSRLEPVLKLLAEKWAGRRQYPDISLDTFYPEIIKRALEIYPIRWI 285
Query: 231 ESGEDAAMEVLKGSKDGFL 249
+ E+ + ++D L
Sbjct: 286 NDVSGGSKEMAEIARDANL 304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,930,111
Number of Sequences: 539616
Number of extensions: 8467440
Number of successful extensions: 15888
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 15853
Number of HSP's gapped (non-prelim): 32
length of query: 501
length of database: 191,569,459
effective HSP length: 122
effective length of query: 379
effective length of database: 125,736,307
effective search space: 47654060353
effective search space used: 47654060353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)