Query 010783
Match_columns 501
No_of_seqs 142 out of 1281
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umv_A Deoxyribodipyrimidine p 100.0 8E-112 3E-116 902.7 33.2 468 9-489 19-495 (506)
2 2xry_A Deoxyribodipyrimidine p 100.0 4E-103 1E-107 838.0 28.2 453 4-478 14-481 (482)
3 3fy4_A 6-4 photolyase; DNA rep 100.0 7E-99 2E-103 807.6 21.7 422 27-490 3-455 (537)
4 1dnp_A DNA photolyase; DNA rep 100.0 1.8E-96 6E-101 782.0 23.2 406 30-490 2-432 (471)
5 3tvs_A Cryptochrome-1; circadi 100.0 1.1E-96 4E-101 792.4 21.1 429 28-490 3-470 (538)
6 1owl_A Photolyase, deoxyribodi 100.0 7.9E-96 3E-100 780.5 26.1 410 28-490 2-439 (484)
7 1u3d_A Cryptochrome 1 apoprote 100.0 7.5E-95 2.6E-99 777.8 24.1 415 27-490 10-450 (509)
8 1np7_A DNA photolyase; protein 100.0 1.1E-94 3.8E-99 773.3 24.4 410 29-490 6-445 (489)
9 2wq7_A RE11660P; lyase-DNA com 100.0 1.8E-94 6.2E-99 779.0 25.8 420 30-490 30-479 (543)
10 2j07_A Deoxyribodipyrimidine p 100.0 2.6E-94 8.9E-99 755.5 24.4 381 30-484 3-395 (420)
11 2e0i_A 432AA long hypothetical 100.0 8.2E-95 2.8E-99 761.5 19.6 377 31-490 3-398 (440)
12 2j4d_A Cryptochrome 3, cryptoc 100.0 1.1E-93 3.7E-98 770.2 24.1 409 29-490 40-481 (525)
13 3zxs_A Cryptochrome B, rscryb; 100.0 8.5E-61 2.9E-65 503.8 19.1 371 30-452 16-435 (522)
14 3s3t_A Nucleotide-binding prot 93.3 0.56 1.9E-05 39.7 10.2 88 38-126 13-114 (146)
15 3dlo_A Universal stress protei 93.1 0.66 2.2E-05 40.3 10.5 87 38-126 32-123 (155)
16 3fdx_A Putative filament prote 92.8 0.92 3.2E-05 38.1 10.8 83 43-126 16-112 (143)
17 3fg9_A Protein of universal st 92.7 0.87 3E-05 39.1 10.6 84 42-126 29-125 (156)
18 3tnj_A Universal stress protei 92.5 0.72 2.5E-05 39.2 9.8 89 38-127 14-116 (150)
19 2dum_A Hypothetical protein PH 91.6 0.94 3.2E-05 39.5 9.7 85 42-127 17-124 (170)
20 3hgm_A Universal stress protei 91.6 1.4 4.6E-05 37.2 10.4 85 42-127 14-117 (147)
21 1tq8_A Hypothetical protein RV 90.4 1 3.6E-05 39.3 8.7 88 38-127 25-126 (163)
22 1mjh_A Protein (ATP-binding do 89.2 2 6.7E-05 37.0 9.5 83 43-126 18-126 (162)
23 3idf_A USP-like protein; unive 88.6 3.1 0.0001 34.6 10.1 82 42-126 13-107 (138)
24 3olq_A Universal stress protei 86.9 9.5 0.00033 36.6 13.8 114 44-158 177-307 (319)
25 2z08_A Universal stress protei 86.5 2.7 9.2E-05 35.0 8.4 83 43-126 15-105 (137)
26 3loq_A Universal stress protei 85.3 4.8 0.00016 38.4 10.6 107 38-155 178-289 (294)
27 2gm3_A Unknown protein; AT3G01 82.6 16 0.00054 31.6 12.1 82 44-126 28-130 (175)
28 1jmv_A USPA, universal stress 82.4 6.6 0.00023 32.6 9.1 112 41-155 13-137 (141)
29 3mt0_A Uncharacterized protein 82.1 7.3 0.00025 37.0 10.4 82 44-126 155-243 (290)
30 1q77_A Hypothetical protein AQ 78.8 9.9 0.00034 31.3 8.9 88 38-127 12-116 (138)
31 3mt0_A Uncharacterized protein 74.8 10 0.00035 36.0 8.8 79 38-127 15-96 (290)
32 3olq_A Universal stress protei 73.3 29 0.001 33.0 11.9 88 38-126 15-117 (319)
33 3loq_A Universal stress protei 73.3 15 0.00052 34.8 9.7 88 38-128 30-131 (294)
34 3ab8_A Putative uncharacterize 64.9 17 0.00058 33.8 7.9 82 43-127 13-116 (268)
35 3cis_A Uncharacterized protein 64.1 11 0.00036 36.2 6.4 86 38-126 179-273 (309)
36 3rjz_A N-type ATP pyrophosphat 63.3 13 0.00044 34.9 6.5 91 55-153 25-121 (237)
37 3cis_A Uncharacterized protein 53.5 40 0.0014 32.0 8.4 83 42-127 31-129 (309)
38 3ab8_A Putative uncharacterize 40.1 37 0.0013 31.3 5.6 77 38-126 162-240 (268)
39 3h75_A Periplasmic sugar-bindi 39.4 1.3E+02 0.0045 28.6 9.8 72 80-156 17-94 (350)
40 3fvv_A Uncharacterized protein 36.9 44 0.0015 29.7 5.5 43 83-126 94-136 (232)
41 3gkn_A Bacterioferritin comigr 35.3 1.2E+02 0.0043 25.1 7.9 41 83-124 55-95 (163)
42 3ixr_A Bacterioferritin comigr 33.9 93 0.0032 26.8 7.0 40 83-123 71-110 (179)
43 3kip_A 3-dehydroquinase, type 33.6 93 0.0032 27.3 6.5 60 97-162 57-123 (167)
44 3ory_A Flap endonuclease 1; hy 32.1 80 0.0027 31.4 6.8 40 86-126 146-185 (363)
45 3u80_A 3-dehydroquinate dehydr 31.7 1.3E+02 0.0045 25.9 7.1 76 85-162 30-113 (151)
46 1gqo_A Dehydroquinase; dehydra 30.3 2.3E+02 0.0079 24.1 8.3 62 95-162 39-106 (143)
47 3n07_A 3-deoxy-D-manno-octulos 30.1 1.4E+02 0.0047 26.4 7.5 40 91-131 62-101 (195)
48 3qk7_A Transcriptional regulat 30.1 1.7E+02 0.0059 26.9 8.7 89 59-157 6-97 (294)
49 3mmz_A Putative HAD family hyd 30.1 1.8E+02 0.006 24.9 8.1 40 89-130 47-86 (176)
50 2wfc_A Peroxiredoxin 5, PRDX5; 29.1 2.3E+02 0.0078 24.1 8.6 45 83-128 52-100 (167)
51 3dx5_A Uncharacterized protein 28.4 2.2E+02 0.0075 26.1 9.1 78 48-126 87-169 (286)
52 3l49_A ABC sugar (ribose) tran 28.1 2.9E+02 0.0099 25.0 9.9 72 80-156 18-94 (291)
53 3n1u_A Hydrolase, HAD superfam 28.0 1.9E+02 0.0064 25.2 8.0 42 90-132 55-96 (191)
54 2iel_A Hypothetical protein TT 26.8 1.3E+02 0.0045 25.5 6.1 68 84-155 58-134 (138)
55 3ij5_A 3-deoxy-D-manno-octulos 26.7 1.7E+02 0.0059 26.1 7.6 41 89-130 84-124 (211)
56 3e8m_A Acylneuraminate cytidyl 26.6 1.7E+02 0.0058 24.3 7.3 43 89-132 39-81 (164)
57 2uyg_A 3-dehydroquinate dehydr 25.7 3E+02 0.01 23.6 8.3 62 95-162 38-106 (149)
58 3mn1_A Probable YRBI family ph 25.6 78 0.0027 27.7 4.9 39 89-128 54-92 (189)
59 2gvs_A Chemosensory protein CS 25.3 17 0.00058 29.8 0.3 20 465-484 88-108 (109)
60 3rfu_A Copper efflux ATPase; a 25.2 81 0.0028 34.6 5.8 42 90-132 563-604 (736)
61 1toa_A Tromp-1, protein (perip 25.1 2.2E+02 0.0076 27.3 8.5 67 82-156 175-254 (313)
62 3gi1_A LBP, laminin-binding pr 24.6 2.3E+02 0.0078 26.8 8.4 70 79-156 156-236 (286)
63 3q94_A Fructose-bisphosphate a 24.5 4.6E+02 0.016 24.9 12.6 56 97-153 79-139 (288)
64 2prs_A High-affinity zinc upta 23.6 2.3E+02 0.0079 26.6 8.2 67 82-156 154-231 (284)
65 3n8k_A 3-dehydroquinate dehydr 23.5 2.8E+02 0.0095 24.3 7.7 62 95-162 67-134 (172)
66 3gv0_A Transcriptional regulat 23.2 2E+02 0.0069 26.3 7.7 70 80-156 23-97 (288)
67 3ujp_A Mn transporter subunit; 23.1 3.6E+02 0.012 25.8 9.5 69 80-156 166-247 (307)
68 3cqj_A L-ribulose-5-phosphate 22.8 3.1E+02 0.011 25.2 9.0 79 47-126 110-193 (295)
69 3uhf_A Glutamate racemase; str 22.7 1.3E+02 0.0046 28.5 6.2 58 64-122 53-112 (274)
70 1h05_A 3-dehydroquinate dehydr 22.7 3.2E+02 0.011 23.3 7.9 62 95-162 41-108 (146)
71 3jy6_A Transcriptional regulat 22.7 3.7E+02 0.013 24.1 9.5 70 80-156 20-93 (276)
72 2l82_A Designed protein OR32; 22.5 3E+02 0.01 22.2 7.2 51 103-156 7-60 (162)
73 3out_A Glutamate racemase; str 22.4 1.9E+02 0.0065 27.2 7.3 60 64-124 36-98 (268)
74 3cx3_A Lipoprotein; zinc-bindi 22.0 3.1E+02 0.01 25.8 8.7 67 82-156 157-234 (284)
75 3lwz_A 3-dehydroquinate dehydr 21.7 2.7E+02 0.0093 23.9 7.2 62 95-162 46-113 (153)
76 2vup_A Glutathione peroxidase- 21.3 3.7E+02 0.013 22.9 8.7 58 58-122 48-114 (190)
77 1xvl_A Mn transporter, MNTC pr 21.1 3.8E+02 0.013 25.8 9.3 67 82-156 182-261 (321)
78 3pm6_A Putative fructose-bisph 21.1 5.6E+02 0.019 24.6 11.6 59 95-153 79-149 (306)
79 3l6u_A ABC-type sugar transpor 21.1 3.5E+02 0.012 24.4 9.0 71 80-156 21-97 (293)
80 2r8e_A 3-deoxy-D-manno-octulos 21.0 2.9E+02 0.01 23.6 7.9 43 89-132 61-103 (188)
81 8abp_A L-arabinose-binding pro 20.9 3.8E+02 0.013 24.4 9.2 71 80-156 15-90 (306)
82 3drn_A Peroxiredoxin, bacterio 20.4 2.8E+02 0.0095 22.9 7.4 59 58-123 28-88 (161)
83 3j08_A COPA, copper-exporting 20.3 76 0.0026 34.1 4.4 44 88-132 464-507 (645)
No 1
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=8.1e-112 Score=902.73 Aligned_cols=468 Identities=64% Similarity=1.157 Sum_probs=403.8
Q ss_pred CccccccccccccCccCCCCCcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCC--ccccchhHHHHHHHHH
Q 010783 9 TAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ--FLGAKARQLGFMLRGL 86 (501)
Q Consensus 9 ~~~~~~r~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~--~~~~~~~r~~Fl~esL 86 (501)
..++++|||+||+.+ .+.++++||||||||||+||+||.+|++.|++.+.+|+||||+||. +...+.+|++||++||
T Consensus 19 ~~~~~~r~~~l~~~~-~~~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL 97 (506)
T 3umv_A 19 SPAHPSRVRVIHPGG-GKPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGL 97 (506)
T ss_dssp CCSCGGGEEEEECCC-SCTTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHH
T ss_pred cccCHhHhhhhccCC-CCCCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHH
Confidence 458999999999876 5677899999999999999999999998777667899999999998 4578899999999999
Q ss_pred HHHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHh---CCCceEEEEecceEEeCc
Q 010783 87 RLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV---SDSVTIHEVDAHNVVPVW 163 (501)
Q Consensus 87 ~~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l---~~gi~~~~~~~~~l~~p~ 163 (501)
.+|+++| +++|++|+|++|++.++ ++|+++++|++|++|++|...+++||++|++.| ..||+++++++++|++|+
T Consensus 98 ~dL~~~L-~~lG~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~ 175 (506)
T 3umv_A 98 RRLAADA-AARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVW 175 (506)
T ss_dssp HHHHHHH-HHTTCCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHH
T ss_pred HHHHHHH-HHcCCceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcc
Confidence 9999999 99999999999999999 999999999999999999988888999999988 479999999999999999
Q ss_pred ccccCCCCccchhhHHHHhhCCCcCCCCCCCCCCCCccC-CCCCCCChHHHHHHHhhcCCCCCccccCCCcHHHHHHHHh
Q 010783 164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWT-GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLK 242 (501)
Q Consensus 164 ~~~~~~~y~~ft~~~~~~~~~~~~~~~~p~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~ 242 (501)
.+.++.+|.++|+++++++.+..++.+.|.. +...+.. ..+..+++..+.+.+...+..++...+++|||++|+++|+
T Consensus 176 ~v~~~~~~~~~t~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~ 254 (506)
T 3umv_A 176 TASAKMEYSAKTFRGKVSKVMDEYLVEFPEL-PAVVPWDREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALL 254 (506)
T ss_dssp HHCSSCCSSHHHHHHHHHTTHHHHSCCCCCC-CCCCCCCSCCCCCCCHHHHHHHHHHTSCCCCCCCSSCCSHHHHHHHHH
T ss_pred cccCCCCCCccCHHHHHHHhccccccCCCCC-CCccccccccccccChhhhhhhhccccccccccCCCCCCHHHHHHHHH
Confidence 8777888999999988887654444444432 1111111 1123345655433221334344444457899999999998
Q ss_pred cchhHHHhhhccCCCCCCCCCCCCCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHH
Q 010783 243 GSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRRE 322 (501)
Q Consensus 243 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrE 322 (501)
|++++|+.+++.+|+++||.|+..++||+|||||+|||||||+|++++.+..... .++.++|++||+||||
T Consensus 255 ~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~---------~~~~~~f~~eL~WRRE 325 (506)
T 3umv_A 255 GSKDGFLTKRIKSYETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLS---------PKSVDAFLEELVVRRE 325 (506)
T ss_dssp CTTTCHHHHTGGGHHHHTTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGS---------HHHHHHHHHHHTHHHH
T ss_pred hhHHHHHHhHHhhhccccCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhc---------cccHHHHHHHHHHhHH
Confidence 8888999999999999999997547999999999999999999999998765432 2678999999999889
Q ss_pred HHHHHHHhCCCCcccccchhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHhccccc
Q 010783 323 LADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWAKKILE 402 (501)
Q Consensus 323 f~~~~~~~~p~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~vak~Lid 402 (501)
||+++++++|+|+...+.++|..+++.+|..|++++.+.|++|++|+|||||||||||||++|||||||+||||||+|||
T Consensus 326 f~~~~~~~~p~~~~~~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~ak~ll~ 405 (506)
T 3umv_A 326 LADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILE 405 (506)
T ss_dssp HHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcchhhhhccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHHHhhcc
Confidence 99999999999987777789998888877666665555699999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEeecccCCCCCCCCCCcCcccccccchhhhcCCccc---hHHhhhhh
Q 010783 403 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG---YIAYVKRI 479 (501)
Q Consensus 403 Wr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g---yIr~wvPe 479 (501)
|+.|+++|+.+++||+++||||||+|||++||||+|||++++||+++||||+||+|||++|++||||+| |||+||||
T Consensus 406 W~~g~~~~~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpe 485 (506)
T 3umv_A 406 WTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQ 485 (506)
T ss_dssp TSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECHHHHHHHhCCCchHHHHHHhCHH
Confidence 999999999999999998799999999999999999999999999999999999999999999999998 99999999
Q ss_pred hcCCCccccc
Q 010783 480 VGGTKKRRAD 489 (501)
Q Consensus 480 L~~~~~~~~~ 489 (501)
|+++|++.-.
T Consensus 486 l~~~~~~~~~ 495 (506)
T 3umv_A 486 SKKRNAEESP 495 (506)
T ss_dssp HHHHC-----
T ss_pred hcCCCccccc
Confidence 9999999554
No 2
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=3.6e-103 Score=837.98 Aligned_cols=453 Identities=49% Similarity=0.842 Sum_probs=370.7
Q ss_pred CCCCCCccccccccccccCccCCCCCcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHH
Q 010783 4 LTPPSTAVQPGRIRVLKQGSLDKKRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFML 83 (501)
Q Consensus 4 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~ 83 (501)
|.|-.-.++++||+++|+.+. +.+ ++|+|||||||++||+||.+|++.|++.+.+|+||||+||.++..+++|++||+
T Consensus 14 ~~~~~~~~~~~r~~~~~~~~~-~~g-~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~ 91 (482)
T 2xry_A 14 LVPRGSHMNPKRIRALKSGKQ-GDG-PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFML 91 (482)
T ss_dssp CCCTTCCCCGGGEEEEECCCC-CSS-CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHHHH
T ss_pred cCcccccCCHHHhHHhhcCCC-CCC-cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHHHH
Confidence 556666689999999998855 444 899999999999999999999987666677999999999998889999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEEEecceEEeCc
Q 010783 84 RGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVW 163 (501)
Q Consensus 84 esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~~~~~~l~~p~ 163 (501)
+||++|+++| +++|++|+++.|++.++|.+|+++++|++|+++.++...+++++++|++.+ ||+++++++++|++++
T Consensus 92 ~sL~~L~~~L-~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l--gi~~~~~~~~~l~~~~ 168 (482)
T 2xry_A 92 KGLQELEVSL-SRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI--SIPFFEVDAHNVVPCW 168 (482)
T ss_dssp HHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--CSCEEEECCSSSSCHH
T ss_pred HHHHHHHHHH-HHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc--CCEEEEEeCCEEcccc
Confidence 9999999999 999999999999999999999999999999999888887788899999888 9999999999999998
Q ss_pred ccccCCCCccchhhHHHHhhCCCcCCCCCCCCCCCCccCCCCCCCC----hHHHHH--HHhh-----cCCCCCcc---cc
Q 010783 164 VASEKLEYSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSID----WDSIIA--AVLR-----KGAEVPEI---GW 229 (501)
Q Consensus 164 ~~~~~~~y~~ft~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~----~~~~~~--~~~~-----~~~~~~~~---~~ 229 (501)
.+.++.+|.+||+|+++.+.+..++.+.|...|...+... +...+ ...+.. .+.. +|...... ..
T Consensus 169 ~~~~~~~~~v~tf~~~~~~~~~~~~~~~p~~~p~~~~~~l-p~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~ 247 (482)
T 2xry_A 169 EASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPEL-SAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWH 247 (482)
T ss_dssp HHCSSCCSSHHHHHHHHHHHHHHHCCCCCCCCCCSSCCC----------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTS
T ss_pred ccccCCCCceecchHHHHHHHHhhccccCCCCCCCCcccc-CCccchhhhhhhhcccCCCCCcchhhhccccccccccCC
Confidence 7777777999999888766543333322211011111000 00011 111100 1111 11111111 14
Q ss_pred CCCcHHHHHHHHhcchhHHHhhhccCCCCCCCCCCCCCCCCCCccccccCcccHHHHHHHHHHHhhhCCccccccccccc
Q 010783 230 CESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKA 309 (501)
Q Consensus 230 ~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
++|||++|+++| ++|+++++.+|+++||.|+. ++||+|||||+|||||||+|++++.+... ..++
T Consensus 248 ~~~Ge~~A~~~L----~~Fl~~~l~~Y~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~----------~~~~ 312 (482)
T 2xry_A 248 FEPGEKAAKKVM----ESFIADRLDSYGALRNDPTK-NMLSNLSPYLHFGQISSQRVVLEVEKAES----------NPGS 312 (482)
T ss_dssp CCCSHHHHHHHH----HHHHHHTHHHHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHCCC----------CTTH
T ss_pred CCCcHHHHHHHH----HHHHHHHHhhhccccCCCCc-cCCCCcCHHHhCCccCHHHHHHHHHHhhc----------cccc
Confidence 689999999999 99999999999999999998 99999999999999999999999976432 1267
Q ss_pred HHHHHHHhHhHHHHHHHHHHhCCCCcccccchhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccch
Q 010783 310 IDTFLEELIVRRELADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 389 (501)
Q Consensus 310 ~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mh 389 (501)
.++|++||+|||||++++++++|+|+.+++.++|...++..+..|+++|.+.+++|++|+|||||||||||||++|||||
T Consensus 313 ~e~fl~ELi~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL~~tG~mH 392 (482)
T 2xry_A 313 KKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMH 392 (482)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHHHHhCccc
Confidence 89999999955599999999999998877666898776665544555555579999999999999999999999999999
Q ss_pred hhhHHHHhcccccC-CCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEeecccCCCCCCCCCCcCcccccccchhhhcCC
Q 010783 390 GFMRMYWAKKILEW-TTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWKERPVFGKIRYMNYSGCKRKFD 468 (501)
Q Consensus 390 nr~Rm~vak~LidW-r~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a~G~~~~~~~~~pyfg~~R~fnp~~q~~k~D 468 (501)
||+||||||+|||| +.|++ +...+.+++++|+||||+|||+|||||+|||++++||+++||||+||||||++|++|||
T Consensus 393 nr~RM~vak~LidW~~~ge~-~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~fg~~R~fnp~~q~~kfD 471 (482)
T 2xry_A 393 GYTRMYWAKKILEWSESPEK-ALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFD 471 (482)
T ss_dssp HHHHHHHHHHHHHTSSSHHH-HHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSC
T ss_pred cHHHHHHHcccCCCCchHHH-HHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccccccceeechhHhhhhcC
Confidence 99999999999999 67777 22333345555679999999999999999999999999999999999999999999999
Q ss_pred ccchHHhhhh
Q 010783 469 VDGYIAYVKR 478 (501)
Q Consensus 469 p~gyIr~wvP 478 (501)
|+||||+|+|
T Consensus 472 ~~~yir~w~~ 481 (482)
T 2xry_A 472 VKLYIEKYSA 481 (482)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999999995
No 3
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=7e-99 Score=807.64 Aligned_cols=422 Identities=18% Similarity=0.213 Sum_probs=337.3
Q ss_pred CCCcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccc------------cchhHHHHHHHHHHHHHHHHH
Q 010783 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG------------AKARQLGFMLRGLRLLQRNIE 94 (501)
Q Consensus 27 ~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~------------~~~~r~~Fl~esL~~L~~~L~ 94 (501)
.++++||||||||||+||+||++|++ .+.+|+||||+||.++. .+++|++||++||.+|+++|
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L- 77 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSL- 77 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHH-
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHH-
Confidence 35679999999999999999999986 46799999999997653 68999999999999999999
Q ss_pred hhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeCcccc---cCCC
Q 010783 95 ETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS---EKLE 170 (501)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p~~~~---~~~~ 170 (501)
+++|++|+|++|++.++|++|+++++|++|+++.++...+++||++|++.|+ .||+++++++++|++|+.+. ++++
T Consensus 78 ~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~ 157 (537)
T 3fy4_A 78 KKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKP 157 (537)
T ss_dssp HHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSC
T ss_pred HHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCC
Confidence 9999999999999999999999999999999998777788899999999994 89999999999999998542 3568
Q ss_pred CccchhhHHHHhhCCCcCCCCCCCCCCCCccCCCCCCCChHHHHHHHhhcCCC---CCccccCCCcHHHHHHHHhcchhH
Q 010783 171 YSAKTLRGKINKLLPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAE---VPEIGWCESGEDAAMEVLKGSKDG 247 (501)
Q Consensus 171 y~~ft~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gGe~~A~~~L~~~~~~ 247 (501)
|.+||+|++.+........|.... |...|.......+.... ++++..++.. ......++|||++|+++| ++
T Consensus 158 y~vftpf~k~~~~~~~~~~p~~~~-p~~~~~~~~~~~~~~~~-~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~ 231 (537)
T 3fy4_A 158 PLSYQSFLKVAGEPSCAKSELVMS-YSSLPPIGDIGNLGISE-VPSLEELGYKDDEQADWTPFRGGESEALKRL----TK 231 (537)
T ss_dssp CSSHHHHHHHHCCCTTTTCCCCCC-CSCCCCCCCCCSSCCCC-CCCTTTTTCCGGGSSCCCSCCCSHHHHHHHH----HH
T ss_pred CCccCHHHHHHHhhcCCcCCCCCc-cccCCCccccccccccc-CCcHHhcCCCcccccccCCCCccHHHHHHHH----HH
Confidence 999999987765432111111000 00001000000000000 0111112211 011224689999999999 99
Q ss_pred HHhh--hccCCCCCCCCCCC--CCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHHH
Q 010783 248 FLTK--RLKNYPTDRNNPLK--PRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRREL 323 (501)
Q Consensus 248 Fl~~--~l~~Y~~~Rd~p~~--~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrEf 323 (501)
|+.+ .+..|++.||.|+. ..+||+|||||+|||||||+|++++.+...... ...++.+.|++||+|| ||
T Consensus 232 Fl~~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~------~~~~~~~~f~~eL~WR-ef 304 (537)
T 3fy4_A 232 SISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK------KHTSPPVSLLGQLLWR-EF 304 (537)
T ss_dssp HTCCHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTS------CCCCTTTSHHHHHHHH-HH
T ss_pred HHhCchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcc------cccccHHHHHHHHHHH-HH
Confidence 9987 69999999999972 379999999999999999999999987553221 1235678899999999 99
Q ss_pred HHHHHHhCCCCcccccchhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----c-
Q 010783 324 ADNFCFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----K- 398 (501)
Q Consensus 324 ~~~~~~~~p~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k- 398 (501)
|+++++++|++...+....|..-+++ .|+ ..|++|++|+|||||||||||||++|||||||+||||| |
T Consensus 305 ~~~~~~~~p~~~~~~~~~~~~~~~w~---~~~----~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~ 377 (537)
T 3fy4_A 305 FYTTAFGTPNFDKMKGNRICKQIPWN---EDH----AMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRG 377 (537)
T ss_dssp HHHHHHTCTTTTSSTTCTTSCCCCCB---CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHCcchhcccCChhhhcCCch---hhh----HHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 99999999998654432222211000 122 25999999999999999999999999999999999998 6
Q ss_pred cc-ccCCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHh
Q 010783 399 KI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAY 475 (501)
Q Consensus 399 ~L-idWr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~ 475 (501)
+| |||+.|++ ||+++ |||||+|+|+|||||+| +|+|+ .|| |||||++|++||||+| |||+
T Consensus 378 ~L~idWr~G~~-------~F~~~-liD~D~a~n~g~Wqw~ag~g~d~------~~f---RifNP~~Q~~kfDp~G~yIr~ 440 (537)
T 3fy4_A 378 DLFIHWEQGRD-------VFERL-LIDSDWAINNGNWMWLSCSSFFY------QFN---RIYSPISFGKKYDPDGKYIRH 440 (537)
T ss_dssp TTCBCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHTTSSSCC------CTT---CCCCTTTTGGGTCTTCHHHHH
T ss_pred hcCCCcHHHHH-------HHHHH-ccccccccChHhhhhhcccCCCc------ccc---cccCHHHHHHHhCCCchHHHH
Confidence 89 99999999 99999 89999999999999999 57775 378 9999999999999999 9999
Q ss_pred hhhhhcCCCcccccc
Q 010783 476 VKRIVGGTKKRRADS 490 (501)
Q Consensus 476 wvPeL~~~~~~~~~~ 490 (501)
|||||++||++.||.
T Consensus 441 wvPEL~~lp~~~Ih~ 455 (537)
T 3fy4_A 441 FLPVLKDMPKQYIYE 455 (537)
T ss_dssp HCGGGTTCCTTTTTC
T ss_pred hCHhhcCCCHHhhCC
Confidence 999999999999996
No 4
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=1.8e-96 Score=781.96 Aligned_cols=406 Identities=19% Similarity=0.228 Sum_probs=334.3
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCcc---ccchhHHHHHHHHHHHHHHHHHhhcCCeEEEE--
Q 010783 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLF-- 104 (501)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~-- 104 (501)
++|||||||||++||+||.+|++. +.+ +|+||||+||.++ ..+++|+.||++||++|+++| +++|++|+++
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~--~~~-~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~~~ 77 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRN--SSA-RVLALYIATPRQWATHNMSPRQAELINAQLNGLQIAL-AEKGIPLLFREV 77 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSS--TTS-EEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred CEEEEeCCCCcccchHHHHHHHhC--CCC-CEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEEc
Confidence 579999999999999999999851 123 8999999999865 578999999999999999999 9999999999
Q ss_pred --ecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEEEecceEEeCcccc--cCCCCccchhhHHH
Q 010783 105 --QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLRGKI 180 (501)
Q Consensus 105 --~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~~~~~~l~~p~~~~--~~~~y~~ft~~~~~ 180 (501)
.|++.++|.+|+++++|++|+++.++...+++||++|++.|+. |+++++++++|++|+.+. .+++|.+||+|++.
T Consensus 78 ~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~-i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~ 156 (471)
T 1dnp_A 78 DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNA 156 (471)
T ss_dssp SSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT-SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC-cEEEEecCCEEEchhhcccCCCCCCcchHHHHHH
Confidence 9999999999999999999999888877788999999999965 999999999999998643 46889999988654
Q ss_pred H-hhCCC-cCCCCCCCCCCCCccCCCCCCCChHHHHHHHhhcCCCCCccccCCCcHHHHHHHHhcchhHHHhhhccCCCC
Q 010783 181 N-KLLPE-YLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPT 258 (501)
Q Consensus 181 ~-~~~~~-~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~ 258 (501)
+ +.+.. ...+.|.+.+...+. .....++ ++ .....-.....++|||++|+++| ++|+.+++.+|++
T Consensus 157 ~~~~l~~~~p~~~~~p~~~~~~~-~~~~~~~------~l-~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~~ 224 (471)
T 1dnp_A 157 WLKRLREGMPECVAAPKVRSSGS-IEPSPSI------TL-NYPRQSFDTAHFPVEEKAAIAQL----RQFCQNGAGEYEQ 224 (471)
T ss_dssp HHHHHHTCCCCCCCCCCCCTTCC-CCCCCCC------CC-CSCCCCCCTTTSCCSHHHHHHHH----HHHHHTHHHHHHH
T ss_pred HHHhccccCCCCCCCccccCccc-ccCCCCc------cc-CCCccccccccCCCCHHHHHHHH----HHHHHHHHHHhhh
Confidence 4 43221 111122110000000 0000111 01 11111000124689999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCCccccccCcccHHHHHHHHHHHhhhCCccccccccccc-HHHHHHHhHhHHHHHHHHHHhCCCCccc
Q 010783 259 DRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKA-IDTFLEELIVRRELADNFCFYQPNYDSL 337 (501)
Q Consensus 259 ~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~-~~~fi~eL~wRrEf~~~~~~~~p~~~~~ 337 (501)
+||.|+. ++||+|||||+|||||||+|++++.+...+. ..++ .++|++||+|| |||+++++++|++...
T Consensus 225 ~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~--------~~~~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~ 294 (471)
T 1dnp_A 225 QRDFPAV-EGTSRLSASLATGGLSPRQCLHRLLAEQPQA--------LDGGAGSVWLNELIWR-EFYRHLITYHPSLCKH 294 (471)
T ss_dssp HTTCTTS-CCSCCCHHHHHHTSSCHHHHHHHHHHHCGGG--------GGTSTTHHHHHHHHHH-HHHHHHHHHCGGGGGT
T ss_pred ccCCcCc-cCCCCCCHhHcCCCcCHHHHHHHHHHHhccc--------cccccHHHHHHHHHHH-HHHHHHHHhCCchhcc
Confidence 9999998 8999999999999999999999998764421 1256 78999999998 9999999999998643
Q ss_pred cc------chhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----ccc-ccCCCC
Q 010783 338 KG------AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTG 406 (501)
Q Consensus 338 ~~------~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idWr~G 406 (501)
.+ .++|. .|+ ..|++|++|+|||||||||||||++|||||||+||+|| |+| |||+.|
T Consensus 295 ~~~~~~~~~l~w~--------~d~----~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g 362 (471)
T 1dnp_A 295 RPFIAWTDRVQWQ--------SNP----AHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREG 362 (471)
T ss_dssp CCSSGGGGGSCCC--------CCH----HHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CCcchhhhcCCCc--------CCH----HHHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHH
Confidence 11 12332 232 25999999999999999999999999999999999998 899 999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHhhhhhhcCCC
Q 010783 407 PEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTK 484 (501)
Q Consensus 407 ~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~wvPeL~~~~ 484 (501)
++ ||+++ |||||+|||+|||||+| ||+|++ ||| |||||++|++||||+| |||+|||||+++|
T Consensus 363 ~~-------~F~~~-llD~d~a~n~g~wqw~ag~G~d~~-----py~---RifNp~~q~~kfDp~G~YIrrwvPeL~~~p 426 (471)
T 1dnp_A 363 ER-------YFMSQ-LIDGDLAANNGGWQWAASTGTDAA-----PYF---RIFNPTTQGEKFDHEGEFIRQWLPELRDVP 426 (471)
T ss_dssp HH-------HHHTT-CTTCCHHHHHHHHHHHTTCSTTCC-----CTT---CCCCHHHHHHHHTTTCHHHHHHCGGGTTSC
T ss_pred HH-------HHHHh-ccCCCcccCHHHHHhhcCCCCCCC-----Ccc---eecCHHHHHHhcCCCchhHHHhChhhccCC
Confidence 99 99999 89999999999999999 588875 999 9999999999999999 9999999999999
Q ss_pred cccccc
Q 010783 485 KRRADS 490 (501)
Q Consensus 485 ~~~~~~ 490 (501)
++.||.
T Consensus 427 ~~~ih~ 432 (471)
T 1dnp_A 427 GKVVHE 432 (471)
T ss_dssp TTGGGS
T ss_pred hhhcCC
Confidence 999986
No 5
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=1.1e-96 Score=792.36 Aligned_cols=429 Identities=15% Similarity=0.150 Sum_probs=336.5
Q ss_pred CCcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccc---cchhHHHHHHHHHHHHHHHHHhhc---CCeE
Q 010783 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETF---QILF 101 (501)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~---G~~L 101 (501)
.+++||||||||||+||+||++|++.+. .|.+|+||||+||.++. .+++|++||++||.+|+++| +++ |++|
T Consensus 3 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~~~~G~~L 80 (538)
T 3tvs_A 3 RGANVIWFRHGLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQL-QAATDGRGRL 80 (538)
T ss_dssp SCEEEEEESSCCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHG-GGSCSSSSCC
T ss_pred CCcEEEEeCCCcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHH-HHhhcCCCeE
Confidence 4578999999999999999999987432 33489999999998763 78999999999999999999 999 9999
Q ss_pred EEEecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeCcccc--c-CCCCccchhh
Q 010783 102 FLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--E-KLEYSAKTLR 177 (501)
Q Consensus 102 ~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p~~~~--~-~~~y~~ft~~ 177 (501)
+|++|++.++|++|+++++|++|+++.++...+++||++|+++|+ .||.++++++++|++|+.+. + +.+|.+||.|
T Consensus 81 ~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f 160 (538)
T 3tvs_A 81 LVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMF 160 (538)
T ss_dssp EEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHH
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHH
Confidence 999999999999999999999999987777767899999999994 89999999999999998642 2 4578899988
Q ss_pred HHHHhhCCCcCCCCCCCCCCCCccCCCCCCC--Ch---HHHHHHHhhcCCC--CC---ccccCCCcHHHHHHHHhcchhH
Q 010783 178 GKINKLLPEYLIDYPMLEQPIEKWTGTRQSI--DW---DSIIAAVLRKGAE--VP---EIGWCESGEDAAMEVLKGSKDG 247 (501)
Q Consensus 178 ~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~--~~---~~~~~~~~~~~~~--~~---~~~~~~gGe~~A~~~L~~~~~~ 247 (501)
++.++.+.....|.+.+..........+... +. .. ++.+..++.. .. ....++|||++|+++| ++
T Consensus 161 ~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~-~p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L----~~ 235 (538)
T 3tvs_A 161 LHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQ-LPTPEHFNVYGDNMGFLAKINWRGGETQALLLL----DE 235 (538)
T ss_dssp HHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSS-CCCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHH----HH
T ss_pred HHHHHhhCCCCCCCCCccccccccccCCcccccccccccC-CCCHHHcCCCcccccccccCCCCCCHHHHHHHH----HH
Confidence 7766554332222222100000000000000 00 00 0111112211 00 1124689999999999 99
Q ss_pred HHhh----hccCCCCCCCCCCC-CCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccc-cccccccHHHHHHHhHhHH
Q 010783 248 FLTK----RLKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKLCPELLY-LPATLKAIDTFLEELIVRR 321 (501)
Q Consensus 248 Fl~~----~l~~Y~~~Rd~p~~-~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~-~~~~~~~~~~fi~eL~wRr 321 (501)
|+.+ .+.+|.+.||.|.. ..+||+|||||+|||||||+|++++.+.........+ ......+.++|++||+||
T Consensus 236 Fl~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~WR- 314 (538)
T 3tvs_A 236 RLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWR- 314 (538)
T ss_dssp HHHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHHH-
T ss_pred HHHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHHH-
Confidence 9943 38999999999852 2799999999999999999999999876543110000 000124568899999999
Q ss_pred HHHHHHHHhCCCCcccccc-----hhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHH
Q 010783 322 ELADNFCFYQPNYDSLKGA-----WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYW 396 (501)
Q Consensus 322 Ef~~~~~~~~p~~~~~~~~-----~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~v 396 (501)
|||+++++++|+|...+.. ++|.. .|+ +.|++|++|+|||||||||||||++|||||||+||||
T Consensus 315 ef~~~~~~~~p~~~~~~~~~~~~~~~w~~-------~~~----~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~v 383 (538)
T 3tvs_A 315 EYFYTMSVNNPNYDRMEGNDICLSIPWAK-------PNE----NLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTV 383 (538)
T ss_dssp HHHHHHHHHSSCTTSSSSCSSCCCCCCCC-------CCS----SHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHhCcchhhccCChhhhcCCccc-------cCH----HHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHH
Confidence 9999999999998654332 34431 022 2599999999999999999999999999999999999
Q ss_pred h----c-cc-ccCCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCc
Q 010783 397 A----K-KI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDV 469 (501)
Q Consensus 397 a----k-~L-idWr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp 469 (501)
| | +| |||+.|++ ||+++ |||||+|+|+|||||+| +|+|+. +||| |||||++|++||||
T Consensus 384 Asfl~k~~L~idWr~G~~-------~F~~~-llD~D~a~n~g~Wqw~ag~g~Dd~----~pyf---RifNP~~Q~~kfDp 448 (538)
T 3tvs_A 384 ATFLTRGGLWQSWEHGLQ-------HFLKY-LLDADWSVCAGNWMWVSSSAFERL----LDSS---LVTCPVALAKRLDP 448 (538)
T ss_dssp HHHHTTTTTCCCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHSCCCSSCC----CTHH---HHCSTTTHHHHSCT
T ss_pred HHHHHHhhhCCCchHHHH-------HHHHH-cccCchhhchhhhhhhhcCCCcCC----CCce---eeeCHHHHHHHhCC
Confidence 7 7 89 99999999 99999 89999999999999998 577532 4999 99999999999999
Q ss_pred cc-hHHhhhhhhcCCCcccccc
Q 010783 470 DG-YIAYVKRIVGGTKKRRADS 490 (501)
Q Consensus 470 ~g-yIr~wvPeL~~~~~~~~~~ 490 (501)
+| |||+|||||++||++.||.
T Consensus 449 ~G~YIrrwvPEL~~lp~~~Ih~ 470 (538)
T 3tvs_A 449 DGTYIKQYVPELMNVPKEFVHE 470 (538)
T ss_dssp TCTTGGGTCGGGSSSCCSSCCS
T ss_pred CcchHHHhChhhcCCCHHhhcC
Confidence 99 9999999999999999995
No 6
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=7.9e-96 Score=780.46 Aligned_cols=410 Identities=21% Similarity=0.272 Sum_probs=336.2
Q ss_pred CCcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCcc---ccchhHHHHHHHHHHHHHHHHHhhcCCeEEEE
Q 010783 28 RGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---GAKARQLGFMLRGLRLLQRNIEETFQILFFLF 104 (501)
Q Consensus 28 ~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~ 104 (501)
++++|+|||||||++||+||.+|++. +.+|+||||+||.++ ..+.+|++||++||++|+++| +++|++|+++
T Consensus 2 ~~~~l~WfrrDLRl~Dn~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L-~~~G~~L~v~ 76 (484)
T 1owl_A 2 AAPILFWHRRDLRLSDNIGLAAARAQ----SAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRY-QQAGSRLLLL 76 (484)
T ss_dssp -CCEEEEESSCCCSSSCHHHHHHHHH----CSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHH-HHHTSCEEEE
T ss_pred CccEEEEECCCCCcchhHHHHHHHhc----CCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEE
Confidence 46789999999999999999999863 348999999999764 578999999999999999999 9999999999
Q ss_pred ecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeCcccc--cCCCCccchhhHHHH
Q 010783 105 QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLRGKIN 181 (501)
Q Consensus 105 ~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p~~~~--~~~~y~~ft~~~~~~ 181 (501)
.|++.++|.+|+++++|++|+++.++...+++||++|++.|+ .||+++++++++|++|+.+. .+++|.+||+|++.+
T Consensus 77 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~ 156 (484)
T 1owl_A 77 QGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNW 156 (484)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHH
Confidence 999999999999999999999988777778899999999994 89999999999999998643 468899999887655
Q ss_pred -hhCCCcCCCCCCCCCCCCccC-------CC-CCCC-ChHHHHHHHhhcCCCCCccccCCCcHHHHHHHHhcchhHHHhh
Q 010783 182 -KLLPEYLIDYPMLEQPIEKWT-------GT-RQSI-DWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTK 251 (501)
Q Consensus 182 -~~~~~~~~~~p~~~~~~~p~~-------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~ 251 (501)
+.+. ..|.|.+.....+.. .. ...+ ++. .+ ..+.... . .++|||++|+++| ++|+.+
T Consensus 157 ~~~~~--~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~l-~~~~~~~-~-~~~~Ge~~A~~~L----~~Fl~~ 223 (484)
T 1owl_A 157 QAQPK--PTPVATPTELVDLSPEQLTAIAPLLLSELPTLK----QL-GFDWDGG-F-PVEPGETAAIARL----QEFCDR 223 (484)
T ss_dssp HHSCC--CCCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTG----GG-TCCCCSC-C-SSCSSHHHHHHHH----HHHHHT
T ss_pred HHhcC--CCCCCCccccccccccccccccccccCCCCCHH----Hc-CCCcccc-C-cCCCCHHHHHHHH----HHHHHH
Confidence 4333 222222100100000 00 0001 111 11 1111111 2 4689999999999 999999
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHHHHHHHHHhC
Q 010783 252 RLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQ 331 (501)
Q Consensus 252 ~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~ 331 (501)
++.+|+++||.|+. .+||+|||||+|||||||+|++++.+....... ....++.+.|++||+|| |||+++++++
T Consensus 224 ~l~~Y~~~rd~p~~-~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~----~~~~~~~~~fl~eL~WR-Ef~~~~~~~~ 297 (484)
T 1owl_A 224 AIADYDPQRNFPAE-AGTSGLSPALKFGAIGIRQAWQAASAAHALSRS----DEARNSIRVWQQELAWR-EFYQHALYHF 297 (484)
T ss_dssp GGGGHHHHTTCTTS-CCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHhccccCCCCc-cCCcCccHhHcCCCcCHHHHHHHHHHHhccccc----ccccccHHHHHHHHHHH-HHHHHHHHhC
Confidence 99999999999998 999999999999999999999999876542100 00125678999999998 9999999999
Q ss_pred CCCccccc-----chhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----ccc-c
Q 010783 332 PNYDSLKG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-L 401 (501)
Q Consensus 332 p~~~~~~~-----~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-i 401 (501)
|++...+. .++|. .|+ ..|++|++|+|||||||||||||++|||||||+||||| |+| |
T Consensus 298 P~~~~~~~~~~~~~l~w~--------~d~----~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~i 365 (484)
T 1owl_A 298 PSLADGPYRSLWQQFPWE--------NRE----ALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLII 365 (484)
T ss_dssp GGGGGSCCSTGGGGCCCC--------CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCC
T ss_pred CccccccCChhhhcCCCc--------CCH----HHHHHHHcCCCCChhHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCC
Confidence 99854211 23343 122 25999999999999999999999999999999999998 888 9
Q ss_pred cCCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHhhhhh
Q 010783 402 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRI 479 (501)
Q Consensus 402 dWr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~wvPe 479 (501)
||+.|++ ||+++ |||||+|||+|||||+| +|+|++ | | |||||++|++||||+| |||+||||
T Consensus 366 dWr~g~~-------~F~~~-llD~d~a~n~g~wqw~ag~G~d~~-----p-f---RifNp~~q~~kfDp~g~yIr~wvPe 428 (484)
T 1owl_A 366 DWRRGEQ-------FFMQH-LVDGDLAANNGGWQWSASSGMDPK-----P-L---RIFNPASQAKKFDATATYIKRWLPE 428 (484)
T ss_dssp CTHHHHH-------HHHTT-CTTCCHHHHHHHHHHTTTCSSSCC-----C-C---CCCCHHHHHHHHSTTCHHHHHHCGG
T ss_pred CCcHHHH-------HHHHh-cccCCcccCHHHHHHhhCcCCCCC-----c-c---ceeCHHHHhhhcCCCchhHHHhChh
Confidence 9999999 99999 89999999999999999 488885 8 8 9999999999999999 99999999
Q ss_pred hcCCCcccccc
Q 010783 480 VGGTKKRRADS 490 (501)
Q Consensus 480 L~~~~~~~~~~ 490 (501)
|+++|++.||.
T Consensus 429 L~~~p~~~ih~ 439 (484)
T 1owl_A 429 LRHVHPKDLIS 439 (484)
T ss_dssp GTTSCHHHHHH
T ss_pred hhcCChhhcCC
Confidence 99999999885
No 7
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=7.5e-95 Score=777.84 Aligned_cols=415 Identities=18% Similarity=0.204 Sum_probs=329.0
Q ss_pred CCCcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccc---cchhHHHHHHHHHHHHHHHHHhhcCCeEEE
Q 010783 27 KRGPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFL 103 (501)
Q Consensus 27 ~~~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v 103 (501)
.++++|+|||||||++||+||.+|++. + +|+||||+||..+. .+..+..||++||++|+++| +++|++|++
T Consensus 10 ~~~~~l~WfrrDLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L-~~~G~~L~v 83 (509)
T 1u3d_A 10 SGGCSIVWFRRDLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL-RSLGTCLIT 83 (509)
T ss_dssp ---CEEEEESSCCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCCcEEEEECCCCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHH-HHCCCeEEE
Confidence 456789999999999999999999873 3 89999999997543 35566679999999999999 999999999
Q ss_pred Ee-cChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHh-CCCceEEEEecceEEeCcccc--cCCCCccchhhHH
Q 010783 104 FQ-GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLRGK 179 (501)
Q Consensus 104 ~~-G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l-~~gi~~~~~~~~~l~~p~~~~--~~~~y~~ft~~~~ 179 (501)
++ |++.++|.+|+++++|++|+++.++...++.||++|++.| +.||+++++++++|++|+.+. .+++|.+||+|++
T Consensus 84 ~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r 163 (509)
T 1u3d_A 84 KRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWE 163 (509)
T ss_dssp EECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHH
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHH
Confidence 98 6999999999999999999998665566678999999999 489999999999999998643 4688999999977
Q ss_pred HHhhCC-CcCCCCCCCCCCCCc-cC-CCCCCCChHHHHHHHhhcCCCCCccccCCCcHHHHHHHHhcchhHHHhhhccCC
Q 010783 180 INKLLP-EYLIDYPMLEQPIEK-WT-GTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNY 256 (501)
Q Consensus 180 ~~~~~~-~~~~~~p~~~~~~~p-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y 256 (501)
.+.... .+..+.+.......+ .. .....+....-.... . ..... ..++|||++|+++| ++|+.+++.+|
T Consensus 164 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~-~~~~~Ge~~A~~~L----~~Fl~~~l~~Y 235 (509)
T 1u3d_A 164 RCLSMPYDPESPLLPPKKIISGDVSKCVADPLVFEDDSEKG-S--NALLA-RAWSPGWSNGDKAL----TTFINGPLLEY 235 (509)
T ss_dssp HHHTCSSCCCCCCCCCSCCCBTTGGGSSCCCCCCCCHHHHH-H--HTTHH-HHCCCSHHHHHHHH----HHHHTTGGGGT
T ss_pred HHHhccCCCCCCCCCccccCccccCCCChhHhCCCcccccc-h--hhhcc-ccCCCcHHHHHHHH----HHHHHHHHHhh
Confidence 554321 111111111000000 00 000011000000000 0 00000 12589999999999 99999999999
Q ss_pred CCCCCCCCCCCCCCCCccccccCcccHHHHHHHHHHHhh----hCCcccccccccccHHHHHHHhHhHHHHHHHHHHhCC
Q 010783 257 PTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARK----LCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQP 332 (501)
Q Consensus 257 ~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~----~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p 332 (501)
+.+||.|+. ++||+|||||+|||||||+|++++.+... ... ....++++.|++||+|| ||++++++++|
T Consensus 236 ~~~Rd~p~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~-----~~~~~s~~~fl~eL~WR-Ef~~~~~~~~p 308 (509)
T 1u3d_A 236 SKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGN-----EAGEESVNLFLKSIGLR-EYSRYISFNHP 308 (509)
T ss_dssp TTTTTCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH-HHHHHHHHSST
T ss_pred hhccCCCCC-CCCCCCChhhccCCCCHHHHHHHHHHHhhhhccccc-----ccccchHHHHHHHHHHH-HHHHHHHHhCc
Confidence 999999998 89999999999999999999999976431 111 11235678999999998 99999999999
Q ss_pred CCcccc-----cchhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----ccc-cc
Q 010783 333 NYDSLK-----GAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LE 402 (501)
Q Consensus 333 ~~~~~~-----~~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-id 402 (501)
++...+ ..++|.. |+ +.|++|++|+|||||||||||||++|||||||+||||| |+| ||
T Consensus 309 ~~~~~~~~~~~~~lpW~~--------d~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~id 376 (509)
T 1u3d_A 309 YSHERPLLGHLKFFPWAV--------DE----NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLP 376 (509)
T ss_dssp TTTTSCSCCTTTTCCCCC--------CH----HHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCC
T ss_pred cccccchhhhhccCCCcC--------Ch----HHHHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCC
Confidence 854211 1234642 22 26999999999999999999999999999999999998 788 99
Q ss_pred CCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHhhhhhh
Q 010783 403 WTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIV 480 (501)
Q Consensus 403 Wr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~wvPeL 480 (501)
||.|++ ||+++ |||||+|||+|||||+| +|+|+. ||| |||||++|++||||+| |||||||||
T Consensus 377 Wr~G~~-------~F~~~-liD~D~a~n~g~wqw~ag~g~d~~-----py~---RifNP~~Q~~kfDp~G~yIrrwvPEL 440 (509)
T 1u3d_A 377 WRWGMK-------YFWDT-LLDADLESDALGWQYITGTLPDSR-----EFD---RIDNPQFEGYKFDPNGEYVRRWLPEL 440 (509)
T ss_dssp HHHHHH-------HHHHH-CTTCCHHHHHHHHHHHHTCSTTCC-----CSS---CCCCHHHHHHHHCTTSHHHHHHCGGG
T ss_pred chHHHH-------HHHHH-hccCCcccchHHHHHHhcCCCCCC-----ccc---cccCHHHHHHhcCCCchhHHHhCHHh
Confidence 999999 99999 89999999999999999 477765 999 9999999999999999 999999999
Q ss_pred cCCCcccccc
Q 010783 481 GGTKKRRADS 490 (501)
Q Consensus 481 ~~~~~~~~~~ 490 (501)
+++|++.||.
T Consensus 441 ~~~p~~~ih~ 450 (509)
T 1u3d_A 441 SRLPTDWIHH 450 (509)
T ss_dssp TTCCHHHHTC
T ss_pred hccccccccC
Confidence 9999999986
No 8
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=1.1e-94 Score=773.32 Aligned_cols=410 Identities=16% Similarity=0.177 Sum_probs=334.0
Q ss_pred CcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCcc--------ccchhHHHHHHHHHHHHHHHHHhhcCCe
Q 010783 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL--------GAKARQLGFMLRGLRLLQRNIEETFQIL 100 (501)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~--------~~~~~r~~Fl~esL~~L~~~L~~~~G~~ 100 (501)
+++|+|||||||++||+||.+|++ .+.+|+||||+||.++ ..+++|++||++||++|+++| +++|++
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~ 80 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESL-QKVGNK 80 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHH-HHTTCC
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHH-HHCCCc
Confidence 478999999999999999999986 4568999999999754 368999999999999999999 999999
Q ss_pred EEEEecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeCcccc--cCCCCccchhh
Q 010783 101 FFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWVAS--EKLEYSAKTLR 177 (501)
Q Consensus 101 L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p~~~~--~~~~y~~ft~~ 177 (501)
|+++.|++.++|.+|+++++|++|+++.++...+++||++|++.|+ .||+++++++++|++|+.+. .+++|.+||+|
T Consensus 81 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F 160 (489)
T 1np7_A 81 LLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKF 160 (489)
T ss_dssp EEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHH
T ss_pred EEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHH
Confidence 9999999999999999999999999998888888899999999994 79999999999999998643 46889999999
Q ss_pred HHHHh-hCCCcCCCCCCCCCCCCcc-CCCCCCCChHHHHHHHhhcCC---CCCccccCCCcHHHHHHHHhcchhHHH--h
Q 010783 178 GKINK-LLPEYLIDYPMLEQPIEKW-TGTRQSIDWDSIIAAVLRKGA---EVPEIGWCESGEDAAMEVLKGSKDGFL--T 250 (501)
Q Consensus 178 ~~~~~-~~~~~~~~~p~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~gGe~~A~~~L~~~~~~Fl--~ 250 (501)
++.++ .......|.|.+.....+. ......+ +.+..++. .......++|||++|+++| ++|+ +
T Consensus 161 ~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~~~ 230 (489)
T 1np7_A 161 RKDIEKKKISIRPCFFAPSQLLPSPNIKLELTA------PPPEFFPQINFDHRSVLAFQGGETAGLARL----QDYFWHG 230 (489)
T ss_dssp HHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCCC------CCGGGSCCCCCCTTSSCCCCCSHHHHHHHH----HHHHTTS
T ss_pred HHHHHHhccCCCCCCCCcccccCccccccccCC------CCHhhcCCCCcCccccCCCCCcHHHHHHHH----HHHHhcc
Confidence 87664 3211112222210000000 0000111 11112211 1112234799999999999 9999 5
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHHHHHHHHHh
Q 010783 251 KRLKNYPTDRNNPLKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFY 330 (501)
Q Consensus 251 ~~l~~Y~~~Rd~p~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~ 330 (501)
+++.+|+++||.|....+||+|||||+|||||||+|++++.+...... ..++.+.|++||+|| |||++++++
T Consensus 231 ~~l~~Y~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~-------~~~~~~~f~~eL~WR-ef~~~~~~~ 302 (489)
T 1np7_A 231 DRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERV-------SNDSTHWLIFELLWR-DFFRFVAQK 302 (489)
T ss_dssp CCGGGHHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTC-------CSHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhHhhhhhcccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhccc-------ccchHHHHHHHHHHH-HHHHHHHHH
Confidence 789999999997743389999999999999999999999987433221 235678899999999 999999998
Q ss_pred CCCCccccc-----chhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----ccc-
Q 010783 331 QPNYDSLKG-----AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI- 400 (501)
Q Consensus 331 ~p~~~~~~~-----~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L- 400 (501)
+|++..... .++|.. |. ..|++|++|+|||||||||||||++|||||||+||||| |+|
T Consensus 303 ~p~~~~~~~~~~~~~~~W~~--------d~----~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~ 370 (489)
T 1np7_A 303 YGNKLFNRGGLLNKNFPWQE--------DQ----VRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLG 370 (489)
T ss_dssp HGGGGGSTTTTTTCCCCCBC--------CH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred CcchhhhhcCcccccCCCcc--------CH----HHHHHHHcCCCCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 888643221 124531 22 25999999999999999999999999999999999998 788
Q ss_pred ccCCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHhhhh
Q 010783 401 LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKR 478 (501)
Q Consensus 401 idWr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~wvP 478 (501)
|||+.|++ ||+++ |||||+++|+|||||+| +|+|++ || |||||++|++||||+| |||+|||
T Consensus 371 idWr~G~~-------~F~~~-LiD~D~a~N~g~wqw~ag~g~d~~------~~---RifNp~~q~~kfDp~g~yIr~wvP 433 (489)
T 1np7_A 371 IDWRWGAE-------WFESC-LIDYDVCSNWGNWNYTAGIGNDAR------DF---RYFNIPKQSQQYDPQGTYLRHWLP 433 (489)
T ss_dssp BCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHHTSSCCTT------SC---CCCCHHHHHHHHSTTSHHHHHHCG
T ss_pred CCChhHHH-------HHHHH-hcccChhcChHhhhhhhccCCCcc------cc---cccCHHHHhhhcCCCCccHHHhCH
Confidence 99999999 99999 89999999999999998 477753 68 9999999999999999 9999999
Q ss_pred hhcCCCcccccc
Q 010783 479 IVGGTKKRRADS 490 (501)
Q Consensus 479 eL~~~~~~~~~~ 490 (501)
||+++|++.||.
T Consensus 434 eL~~~p~~~ih~ 445 (489)
T 1np7_A 434 ELKNLPGDKIHQ 445 (489)
T ss_dssp GGTTCCSGGGGC
T ss_pred HhhccCcccccC
Confidence 999999999986
No 9
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=1.8e-94 Score=779.03 Aligned_cols=420 Identities=18% Similarity=0.194 Sum_probs=338.2
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHHhh--CCCCEEEEEEecCCccc---cchhHHHHHHHHHHHHHHHHHhhcCCeEEEE
Q 010783 30 PVVYWMFRDQRVRDNWALIHAVDQANK--NNVPVAVAFNLFDQFLG---AKARQLGFMLRGLRLLQRNIEETFQILFFLF 104 (501)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~--~~~~vl~vfi~dp~~~~---~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~ 104 (501)
++|+|||||||++||+||.+|++.+.. .+.||+||||+||.++. .+++|+.||++||++|+++| +++|++|+++
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v~ 108 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQL-RKLNSRLFVV 108 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHH-HHTTCCCEEE
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEE
Confidence 459999999999999999999886543 34569999999998764 78999999999999999999 9999999999
Q ss_pred ecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeCcc-c--ccCCCCccchhhHHH
Q 010783 105 QGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPVWV-A--SEKLEYSAKTLRGKI 180 (501)
Q Consensus 105 ~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p~~-~--~~~~~y~~ft~~~~~ 180 (501)
.|++.++|.+|+++++|++|+++.++...++.||+.|+++|+ .||+++++++++|++|+. + ..+.+|.+||+|++.
T Consensus 109 ~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~~ 188 (543)
T 2wq7_A 109 RGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGI 188 (543)
T ss_dssp ESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHHH
T ss_pred eCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHHHHHHH
Confidence 999999999999999999999987766666889999999994 799999999999999986 3 357889999999876
Q ss_pred HhhCCCcCCCCCCCCCCCCccCCCCCC----------CChHHHHHHHhhcCCCCCccccCCCcHHHHHHHHhcchhHHHh
Q 010783 181 NKLLPEYLIDYPMLEQPIEKWTGTRQS----------IDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLT 250 (501)
Q Consensus 181 ~~~~~~~~~~~p~~~~~~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~ 250 (501)
+..+.... |.+. +...+....+.. ..+.. +..+ ..+........++|||++|+++| ++||.
T Consensus 189 ~~~~~~~~-p~~~--p~~~~~~~~p~~~~~~~~~~~~~~~p~-l~~l-~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~ 259 (543)
T 2wq7_A 189 VEQLKVPK-VLGV--PEKLKNMPTPPKDEVEQKDSAAYDCPT-MKQL-VKRPEELGPNKFPGGETEALRRM----EESLK 259 (543)
T ss_dssp HTTSCCCC-CCCC--CCCCSSCCCCCCCHHHHHCTTTTSCCC-HHHH-CSCGGGCCCCCSCCSHHHHHHHH----HHHHT
T ss_pred HHHccCCC-CCCc--chhccccccccccccccccccccCCCC-HHHc-CCCccccccCCCCCCHHHHHHHH----HHHHh
Confidence 65432111 2221 100000000000 01111 1122 11111111124699999999999 99999
Q ss_pred hh--ccCCCCCCCCCCC-CCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHHHHHHH
Q 010783 251 KR--LKNYPTDRNNPLK-PRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNF 327 (501)
Q Consensus 251 ~~--l~~Y~~~Rd~p~~-~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~ 327 (501)
++ +.+|++.||.|+. ..+||+|||||+|||||||+|++++.+...... ...++.+.|++||+|| |||+++
T Consensus 260 ~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~------~~~~~~~~f~~eL~WR-Ef~~~~ 332 (543)
T 2wq7_A 260 DEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQP------KHSQPPVSLIGQLMWR-EFYYTV 332 (543)
T ss_dssp CHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCS------SCCCTTTSHHHHHHHH-HHHHHH
T ss_pred CChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccc------cccccHHHHHHHHHHH-HHHHHH
Confidence 99 9999999999973 389999999999999999999999987544321 1235678899999999 999999
Q ss_pred HHhCCCCcccccchhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----c-cc-c
Q 010783 328 CFYQPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----K-KI-L 401 (501)
Q Consensus 328 ~~~~p~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k-~L-i 401 (501)
++++|+|...+..+.|..-.++ .+. ..|++|++|+|||||||||||||++|||||||+||||| | +| |
T Consensus 333 ~~~~P~~~~~~~~~~~~~~~w~---~~~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~i 405 (543)
T 2wq7_A 333 AAAEPNFDRMLGNVYCMQIPWQ---EHP----DHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWI 405 (543)
T ss_dssp HHTCTTTTSSTTCTTCCCCCCC---CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCC
T ss_pred HHhCCccccccCChHhhcCCCc---cCH----HHHHHHHcCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCC
Confidence 9999998765443322211111 111 25999999999999999999999999999999999998 8 89 9
Q ss_pred cCCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEeec-ccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHhhhhh
Q 010783 402 EWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSIC-GVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRI 479 (501)
Q Consensus 402 dWr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a~-G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~wvPe 479 (501)
||+.|++ ||+++ |||||+|||+|||||+|| |+|+ .|| |||||++|++||||+| |||+||||
T Consensus 406 dWr~G~~-------~F~~~-LiD~D~a~n~g~Wqw~aG~g~D~------~~~---RifNP~~q~~kfDp~g~yIr~wvPE 468 (543)
T 2wq7_A 406 SWEEGQR-------VFEQL-LLDQDWALNAGNWMWLSASAFFH------QYF---RVYSPVAFGKKTDPQGHYIRKYVPE 468 (543)
T ss_dssp CHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHTTSSSCC------CTT---CCCCTTTGGGGTCTTCHHHHHHSGG
T ss_pred CCchHHH-------HHHHH-hccCCcccCHHHHHHHhcCCCcC------ccc---cccCHHHHhhhcCCCchhHHHhCHH
Confidence 9999999 99999 899999999999999994 6765 378 9999999999999999 99999999
Q ss_pred hcCCCcccccc
Q 010783 480 VGGTKKRRADS 490 (501)
Q Consensus 480 L~~~~~~~~~~ 490 (501)
|+++|++.||.
T Consensus 469 L~~~p~~~ih~ 479 (543)
T 2wq7_A 469 LSKYPAGCIYE 479 (543)
T ss_dssp GTTSCHHHHTS
T ss_pred hhccccccccC
Confidence 99999999986
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=2.6e-94 Score=755.53 Aligned_cols=381 Identities=22% Similarity=0.294 Sum_probs=324.7
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEecChh
Q 010783 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAE 109 (501)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~ 109 (501)
++|+|||||||++||+||.+|++ .+ +|+||||+||.++..+++|+.||++||++|+++| +++|++|+++.|++.
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~----~~-~v~~vfi~d~~~~~~~~~r~~fl~~sL~~l~~~L-~~~g~~l~~~~g~~~ 76 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALA----RG-PVVGLVVLDPNNLKTTPRRRAWFLENVRALREAY-RARGGALWVLEGLPW 76 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHT----TS-CEEEEEEECHHHHSSCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEESCHH
T ss_pred eEEEEeCCCCCccccHHHHHHHh----CC-CEEEEEEECCccccCCHHHHHHHHHHHHHHHHHH-HHCCCeEEEEeCCHH
Confidence 68999999999999999999985 34 9999999999755338999999999999999999 999999999999999
Q ss_pred hHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEEEecceEEeCcccccCCCCccchhhHHHHhhCCCcCC
Q 010783 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLLPEYLI 189 (501)
Q Consensus 110 ~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~~~~~~l~~p~~~~~~~~y~~ft~~~~~~~~~~~~~~ 189 (501)
++|.+|+++++|++|+++.++...+++||++|++.| ||+++++++++|++|+. +++|.+||+|++.++.+. .
T Consensus 77 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l--~i~~~~~~~~~l~~~~~---~~~~~~~t~f~k~~~~~~---~ 148 (420)
T 2j07_A 77 EKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL--PVPLHLLPAPHLLPPDL---PRAYRVYTPFSRLYRGAA---P 148 (420)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC--SSCEEEECCCCSSCTTC---SSCCSSHHHHHTTCCCCC---C
T ss_pred HHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc--CCeEEEeCCCEEEccCC---CCccccccHHHHHHhhcc---C
Confidence 999999999999999998888777889999999999 99999999999999987 889999999987654211 2
Q ss_pred CCCCCCCCCCccCCCCCCCChHHHHHHHhhcCCCCCccccCCCcHHHHHHHHhcchhHHHhhhccCCCCCCCCCCCCCCC
Q 010783 190 DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPRAL 269 (501)
Q Consensus 190 ~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~~t 269 (501)
|.+.+ ...+. +++... +.. ... ....++|||++|+++| ++|+++++.+|+++||.|+. .+|
T Consensus 149 p~~~p--~~~~~-----p~~~~~----l~~--~~~-~~~~~~~Ge~~A~~~L----~~Fl~~~l~~Y~~~rd~p~~-~~t 209 (420)
T 2j07_A 149 PLPPP--EALPK-----GPEEGE----IPR--EDP-GLPLPEPGEEAALAGL----RAFLEAKLPRYAEERDRLDG-EGG 209 (420)
T ss_dssp CCCCC--SSCCC-----CCCCCC----CCC--CCC-SSCCCCCSHHHHHHHH----HHHHHHTGGGHHHHTTCTTC-TTS
T ss_pred CCCCc--cccCC-----CCcccc----CCC--ccc-ccccCCCcHHHHHHHH----HHHHHHHHhhhhhccCCCCc-cCC
Confidence 22211 01010 011000 101 011 1224699999999999 99999999999999999998 899
Q ss_pred CCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHHHHHHHHHhCCCCccccc-----chhhh
Q 010783 270 SGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKG-----AWEWA 344 (501)
Q Consensus 270 S~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~-----~~~w~ 344 (501)
|+|||||+|||||||+|++++.+.. . ++.++|++||+|| |||+++++++|++...+. .++|.
T Consensus 210 S~LSpyL~~G~lSpr~v~~~~~~~~---~---------~~~~~f~~eL~WR-Ef~~~~~~~~p~~~~~~~~~~~~~l~w~ 276 (420)
T 2j07_A 210 SRLSPYFALGVLSPRLAAWEAERRG---G---------EGARKWVAELLWR-DFSYHLLYHFPWMAERPLDPRFQAFPWQ 276 (420)
T ss_dssp CCCHHHHHTTSSCHHHHHHHHHHHC---S---------HHHHHHHHHHHHH-HHHHHHHHHCGGGGTSCSSGGGTTCCCC
T ss_pred CCcchhhcCCccCHHHHHHHHHHHh---c---------cCHHHHHHHHHHH-HHHHHHHHhCCcccccccchhhhcCCcc
Confidence 9999999999999999999998653 2 5778999999988 999999999998753221 12332
Q ss_pred HhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----ccc-ccCCCCHHHHHHHHHHHhh
Q 010783 345 RKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAIAIYLND 419 (501)
Q Consensus 345 ~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idWr~G~~~a~~~~~~f~~ 419 (501)
.|+ ..+++|++|+|||||||||||||++|||||||+||||| |+| |||+.|++ ||++
T Consensus 277 --------~d~----~~~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~-------~F~~ 337 (420)
T 2j07_A 277 --------EDE----ALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEE-------AFRH 337 (420)
T ss_dssp --------CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-------HHHH
T ss_pred --------cCH----HHHHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHH-------HHHH
Confidence 122 25999999999999999999999999999999999998 899 99999999 9999
Q ss_pred hccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHhhhhhhcCCC
Q 010783 420 KYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTK 484 (501)
Q Consensus 420 ~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~wvPeL~~~~ 484 (501)
+ |||||+|||+|||||+| +|+|++ ||| |||||++|++||||+| |||+|||||+++|
T Consensus 338 ~-llD~d~a~n~g~wqw~aG~g~d~~-----pyf---R~fNp~~q~~kfDp~g~yir~w~pel~~~p 395 (420)
T 2j07_A 338 L-LLDGDRAVNLQGWQWAGGLGVDAA-----PYF---RVFNPVLQGERHDPEGRWLKRWAPEYPSYA 395 (420)
T ss_dssp H-CTTCCHHHHHHHHHHHTTSSGGGC-----CTT---CCCCHHHHHHHHSTTSHHHHHHCTTCSSSS
T ss_pred H-hhcCCccccHHHHHHHHccCCCCC-----CCc---eeeCHHHHHHHhCCCchhHHHhChhhcCCC
Confidence 9 89999999999999999 477775 999 9999999999999999 9999999999987
No 11
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.2e-95 Score=761.50 Aligned_cols=377 Identities=19% Similarity=0.199 Sum_probs=320.6
Q ss_pred EEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccc----cchhHHHHHHHHHHHHHHHHHhhcCCeEEEEec
Q 010783 31 VVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AKARQLGFMLRGLRLLQRNIEETFQILFFLFQG 106 (501)
Q Consensus 31 ~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G 106 (501)
+|||||||||++||+||.+|++. +.+|+||||+||.++. .+++|++||++||++|+++| +++|++|+++.|
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~~L~v~~g 77 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSE----CDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL-RKKGSRLNVFFG 77 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHH----SSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHH-HTTTCCCEEEES
T ss_pred EEEEeCCCCccchhHHHHHHHhc----CCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHH-HHcCCeEEEEEC
Confidence 79999999999999999999873 5699999999997653 78999999999999999999 999999999999
Q ss_pred ChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHh-CCCceEEEEecceEEeCcccccCCCCccchhhHHHHhhC-
Q 010783 107 EAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDSVTIHEVDAHNVVPVWVASEKLEYSAKTLRGKINKLL- 184 (501)
Q Consensus 107 ~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l-~~gi~~~~~~~~~l~~p~~~~~~~~y~~ft~~~~~~~~~- 184 (501)
++.++|.+|++ +|++|+++.++...+++||++|++.| +.||+++++++++|++|+.+ +|++||+|++.+...
T Consensus 78 ~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~----~y~vftpf~~~~~~~~ 151 (440)
T 2e0i_A 78 EAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF----HHRNFTSFYNEVSKVK 151 (440)
T ss_dssp CHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC----CCSSHHHHHHHHTTSC
T ss_pred CHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc----CcccCcHHHHHHHHhc
Confidence 99999999999 99999998888777889999999999 58999999999999999876 799999887765432
Q ss_pred -CCcCCCCCCCCCCCCccCCCCCCCChHHHHHHHhhcCCCCCccccCCCcHHHHHHHHhcchhHHHhhhccCCCCCCCCC
Q 010783 185 -PEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRKGAEVPEIGWCESGEDAAMEVLKGSKDGFLTKRLKNYPTDRNNP 263 (501)
Q Consensus 185 -~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p 263 (501)
..+..++|.. ...|. +. ++.. +.. . ...++|||++|+++| + |+++++.+| ++||.|
T Consensus 152 ~~~p~~~~~~~--~~~~~---p~--~~~~----lp~-~-----~~~~~~Ge~~A~~~L----~-Fl~~~l~~Y-~~rd~p 208 (440)
T 2e0i_A 152 VREPETMEGSF--DVTDS---SM--NVDF----LLT-F-----KKIESPLFRGGRREG----L-YLLHRNVDF-RRRDYP 208 (440)
T ss_dssp CCCCCCCCCCB--CCCSS---SB--CGGG----GGG-T-----CCCCCTTCCCSHHHH----H-HHHTCCCCG-GGTTCT
T ss_pred ccccccCCCCc--ccCCC---cc--hhhh----CCc-c-----ccCCCCCHHHHHHHH----H-HHHhhhhcC-CcCCCc
Confidence 2101111111 01111 11 1111 111 1 123689999999999 9 999999999 999999
Q ss_pred CCCCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHHHHHHHHHhCCCCccccc----
Q 010783 264 LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNFCFYQPNYDSLKG---- 339 (501)
Q Consensus 264 ~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~~~~~p~~~~~~~---- 339 (501)
+. ++||+|||||+|||||||+|++++ ++.++|++||+|| |||+++++++|++...+.
T Consensus 209 ~~-~~tS~LSPyL~~G~lSpr~v~~~~-----------------~~~~~fl~eL~WR-Ef~~~~~~~~P~~~~~~~~~~~ 269 (440)
T 2e0i_A 209 AE-NNNYRLSPHLKFGTISMREAYYTQ-----------------KGKEEFVRELYWR-DFFTLLAYYNPHVFGHCYRREY 269 (440)
T ss_dssp TT-TCCCCCHHHHHTTSSCHHHHHHHS-----------------TTCHHHHHHHHHH-HHHHHHHHHCGGGTTSCSSGGG
T ss_pred cc-cCCCCccHhHhCCCCCHHHHHHHh-----------------cCHHHHHHHHHHH-HHHHHHHHhCCCccccccchhh
Confidence 87 999999999999999999999987 1347899999988 999999999998764211
Q ss_pred -chhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----ccc-ccCCCCHHHHHHH
Q 010783 340 -AWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----KKI-LEWTTGPEEALAI 413 (501)
Q Consensus 340 -~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k~L-idWr~G~~~a~~~ 413 (501)
.++|. .|+ ..|++|++|+|||||||||||||++|||||||+||||| |+| |||+.|++
T Consensus 270 ~~l~W~--------~d~----~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~----- 332 (440)
T 2e0i_A 270 DNISWE--------NNE----SYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGER----- 332 (440)
T ss_dssp GGCCCC--------CCH----HHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHH-----
T ss_pred hcCCcc--------cch----HHHHHHHhCCCCCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHH-----
Confidence 23453 133 24999999999999999999999999999999999998 899 99999999
Q ss_pred HHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHhhhhhhcCCCcccccc
Q 010783 414 AIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAYVKRIVGGTKKRRADS 490 (501)
Q Consensus 414 ~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~wvPeL~~~~~~~~~~ 490 (501)
||+++ |||||+|||+|||||+| +|+| +|| |||||++|++||||+| |||+|||||+++|++.||.
T Consensus 333 --~F~~~-llD~d~a~n~g~wqw~aG~g~d-------~~~---RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~ 398 (440)
T 2e0i_A 333 --YFATK-LVDYDPAINNGNWQWIASTGVD-------YMF---RVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHS 398 (440)
T ss_dssp --HHHHH-CTTCCHHHHHHHHHHHTTSSSC-------CSC---CCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTT
T ss_pred --HHHHH-cccCCccccHHHHHHHhCcCCC-------CCC---CccCHHHHHHHhCCCcHhHHHhCHHhhccCcccccC
Confidence 99998 89999999999999999 4665 378 9999999999999999 9999999999999999986
No 12
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=1.1e-93 Score=770.15 Aligned_cols=409 Identities=19% Similarity=0.213 Sum_probs=331.1
Q ss_pred CcEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCcc---------ccchhHHHHHHHHHHHHHHHHHhhcCC
Q 010783 29 GPVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---------GAKARQLGFMLRGLRLLQRNIEETFQI 99 (501)
Q Consensus 29 ~~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---------~~~~~r~~Fl~esL~~L~~~L~~~~G~ 99 (501)
+++|+|||||||++||+||.+|++ .+.+|+||||+||.++ ..+++|++||++||++|+++| +++|+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L-~~~G~ 114 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNL-MKRGL 114 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred CeEEEEeCCCcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 568999999999999999999987 3568999999999754 358899999999999999999 99999
Q ss_pred eEEEEecChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHh-CCC--ceEEEEecceEEeCcccc--cCCCCccc
Q 010783 100 LFFLFQGEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-SDS--VTIHEVDAHNVVPVWVAS--EKLEYSAK 174 (501)
Q Consensus 100 ~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l-~~g--i~~~~~~~~~l~~p~~~~--~~~~y~~f 174 (501)
+|+++.|++.++|.+|+++++|++|+++.++...++.+|++|++.| +.| |+++++++++|++|+.+. .+.+|.+|
T Consensus 115 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vf 194 (525)
T 2j4d_A 115 NLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVY 194 (525)
T ss_dssp CCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSH
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCcccH
Confidence 9999999999999999999999999999888888889999999999 478 899999999999998643 46789999
Q ss_pred hhhHHHHhh-CCCcCCCCCCCCCCCCccCCCCCCCChHHHHHHHhhc--CCC-CCccccCCCcHHHHHHHHhcchhHHH-
Q 010783 175 TLRGKINKL-LPEYLIDYPMLEQPIEKWTGTRQSIDWDSIIAAVLRK--GAE-VPEIGWCESGEDAAMEVLKGSKDGFL- 249 (501)
Q Consensus 175 t~~~~~~~~-~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~gGe~~A~~~L~~~~~~Fl- 249 (501)
|+|++.++. +. ...|+|.. ...+.. +..++...+ +++..+ ... ......++|||++|+++| ++|+
T Consensus 195 t~F~r~~~~~~~-~~~p~~~p--~~~~~~--~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L----~~Fl~ 264 (525)
T 2j4d_A 195 TQFRKSVEAKCS-IRSSTRIP--LSLGPT--PSVDDWGDV-PTLEKLGVEPQEVTRGMRFVGGESAGVGRV----FEYFW 264 (525)
T ss_dssp HHHHHHHHHHCC-CCCCCCBC--SCCCCC--CCCSCCCCC-CCTTTTTCCCCCCCSEEEECCSHHHHHHHH----HHHHT
T ss_pred HHHHHHHHHhcC-CCCCCCCc--cccCCc--cccccccCC-CCHHHcCCCcccccccCCCCCcHHHHHHHH----HHHHh
Confidence 998765543 32 22232221 111100 000000000 111111 110 011123689999999999 9999
Q ss_pred h-hhccCCCCCCCCC-CCCCCCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHHHHHHHhHhHHHHHHHH
Q 010783 250 T-KRLKNYPTDRNNP-LKPRALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAIDTFLEELIVRRELADNF 327 (501)
Q Consensus 250 ~-~~l~~Y~~~Rd~p-~~~~~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~~fi~eL~wRrEf~~~~ 327 (501)
+ +++.+|+++||.| +. .+||+|||||+|||||||+|++++.++..... ..++.+.|++||+|| |||+++
T Consensus 265 ~~~~l~~Y~~~Rd~~~~~-~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~-------~~~~~~~f~~EL~WR-Ef~~~~ 335 (525)
T 2j4d_A 265 KKDLLKVYKETRNGMLGP-DYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-------ANNSTYWVLFELIWR-DYFRFL 335 (525)
T ss_dssp TSCCGGGHHHHTTCCSSS-TTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTC-------CSHHHHHHHHHHHHH-HHHHHH
T ss_pred hCchHhhhcccCCCcccc-ccCCCcChhhcCCcCCHHHHHHHHHHHhhccc-------ccccHHHHHHHHHHH-HHHHHH
Confidence 6 5799999999986 56 89999999999999999999999987543321 235678899999998 999998
Q ss_pred HHhC-CCCcccccc----hhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccchhhhHHHHh----c
Q 010783 328 CFYQ-PNYDSLKGA----WEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMHGFMRMYWA----K 398 (501)
Q Consensus 328 ~~~~-p~~~~~~~~----~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mhnr~Rm~va----k 398 (501)
++++ |.++..++. ++|. .+. +.|++|++|+|||||||||||||++|||||||+||||| |
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~w~--------~~~----~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k 403 (525)
T 2j4d_A 336 SIKCGNSLFHLGGPRNVQGKWS--------QDQ----KLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR 403 (525)
T ss_dssp HHHHGGGGTSTTTTTTCCCCCB--------CCH----HHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHcCchhhhccCchhhcCCCC--------CCH----HHHHHHHcCCCCChHHHHHHHHHHHHCCcCHHHHHHHHHHHHH
Confidence 7654 655443332 2332 121 36999999999999999999999999999999999998 7
Q ss_pred cc-ccCCCCHHHHHHHHHHHhhhccccCCCCCCCcCcEEee-cccCCCCCCCCCCcCcccccccchhhhcCCccc-hHHh
Q 010783 399 KI-LEWTTGPEEALAIAIYLNDKYEIDGRDPNGYVGCMWSI-CGVHDQGWKERPVFGKIRYMNYSGCKRKFDVDG-YIAY 475 (501)
Q Consensus 399 ~L-idWr~G~~~a~~~~~~f~~~yliD~d~a~n~g~wqw~a-~G~~~~~~~~~pyfg~~R~fnp~~q~~k~Dp~g-yIr~ 475 (501)
+| |||+.|++ ||+++ |||||+|||+|||||+| ||+|++ | | |||||++|++||||+| ||||
T Consensus 404 ~L~idWr~G~~-------~F~~~-LiD~D~a~n~g~WQw~aG~g~D~~-----~-~---RifNP~~q~kk~Dp~G~YIrr 466 (525)
T 2j4d_A 404 DMGLDWRMGAE-------WFETC-LLDYDPCSNYGNWTYGAGVGNDPR-----E-D---RYFSIPKQAQNYDPEGEYVAF 466 (525)
T ss_dssp TSCBCHHHHHH-------HHHHH-CTTCCHHHHHHHHHHHHTCSSCGG-----G-C---CCCCHHHHHHHHCTTCHHHHH
T ss_pred hcCCCcHHHHH-------HHHHh-ccccchhcChHHHHhhcCCCCCcc-----c-c---ccCCHHHHhhhcCCCchhHHH
Confidence 88 99999999 99999 89999999999999999 577775 6 7 9999999999999999 9999
Q ss_pred hhhhhcCCCcccccc
Q 010783 476 VKRIVGGTKKRRADS 490 (501)
Q Consensus 476 wvPeL~~~~~~~~~~ 490 (501)
|||||+++|++.||.
T Consensus 467 wvPEL~~~p~~~ih~ 481 (525)
T 2j4d_A 467 WLQQLRRLPKEKRHW 481 (525)
T ss_dssp HSGGGTTSCTTTTTS
T ss_pred hChhhhcCChhcccC
Confidence 999999999999985
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=8.5e-61 Score=503.75 Aligned_cols=371 Identities=13% Similarity=0.114 Sum_probs=273.7
Q ss_pred cEEEEEeCCCCccCCHHHHHHHHHHhhCCCCEEEEEEecCC-ccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEe---
Q 010783 30 PVVYWMFRDQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQ-FLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--- 105 (501)
Q Consensus 30 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~-~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--- 105 (501)
++++|.--|.-..++++|..+-. ....|+.+-+.+.. +...++.|+.|++.||++|+++| ++.|.+|+++.
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~~~----~~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L-~~~G~~v~y~~~~~ 90 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAADP----AADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRL-QERGFRVAYSRLDD 90 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTCCT----TTCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHH-HHTTCCEEEECTTC
T ss_pred heeEEeecccCCCccchhhhcCC----CCCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEeccC
Confidence 46899999999999988875421 11123222221111 23578999999999999999999 99999999998
Q ss_pred ----cChhhHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEEEecc-eEEeCccc----ccCCCCccchh
Q 010783 106 ----GEAEDNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDAH-NVVPVWVA----SEKLEYSAKTL 176 (501)
Q Consensus 106 ----G~~~~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~~~~~-~l~~p~~~----~~~~~y~~ft~ 176 (501)
|++.++|.++++++++++|+++ +|.+ +.++++|++. ||+++.+++. .|++|+++ ..+++|.++.|
T Consensus 91 ~~~~g~~~~~L~~l~~~~~~~~v~~~-~P~e--~r~~~~l~~~---gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~me~F 164 (522)
T 3zxs_A 91 PDTGPSIGAELLRRAAETGAREAVAT-RPGD--WRLIEALEAM---PLPVRFLPDDRFLCPADEFARWTEGRKQLRMEWF 164 (522)
T ss_dssp TTCCSSHHHHHHHHHHHHTCCCEEEE-CCSC--HHHHHHHHHS---SSCEEEECCCCSSSCHHHHHHHHTTCSSCCHHHH
T ss_pred ccccCCHHHHHHHHHHHcCCCEEEEe-Ccch--HHHHHHHHHc---CCcEEEeCCCCcccCHHHHHHhhcCCCCeEeeHH
Confidence 8899999999999999999999 5766 4678888754 9999999985 67888764 35788999866
Q ss_pred hHHHHhhCCCcCC-----------------CCCCCCCCCCccCCCCCCCChHHHHHHHhhc--C--CCCCccccCCCcHH
Q 010783 177 RGKINKLLPEYLI-----------------DYPMLEQPIEKWTGTRQSIDWDSIIAAVLRK--G--AEVPEIGWCESGED 235 (501)
Q Consensus 177 ~~~~~~~~~~~~~-----------------~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~gGe~ 235 (501)
|+.+++....+|. +.|.....+.|....++.+ ..++++.+... + ..+. ...+++||+
T Consensus 165 YR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~~-~~~v~~~v~~~~~~~~G~~~-~~~~~~ge~ 242 (522)
T 3zxs_A 165 YREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAE-VRAVLDLVEARFPRHFGRLR-PFHWATDRA 242 (522)
T ss_dssp HHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCHH-HHHHHHHHHHHCTTSSSCCC-SCCCCCSHH
T ss_pred HHHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCchh-HHHHHHHHHHhccCCcCccc-cCCCCCCHH
Confidence 6666655332221 1121100111111111111 11222333211 1 1122 234799999
Q ss_pred HHHHHHhcchhHHHhhhccCCCCCCCCCCCCC----CCCCCccccccCcccHHHHHHHHHHHhhhCCcccccccccccHH
Q 010783 236 AAMEVLKGSKDGFLTKRLKNYPTDRNNPLKPR----ALSGLSPYLHFGQISAQRCALEARKARKLCPELLYLPATLKAID 311 (501)
Q Consensus 236 ~A~~~L~~~~~~Fl~~~l~~Y~~~Rd~p~~~~----~tS~LSpyL~~G~IS~R~v~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
+|+++| ++|+.+++..|+..||.|+. + +||+|||||++|+||||+|++++.+...... ...++++
T Consensus 243 ~A~~~L----~~Fl~~rl~~Y~~~rD~~~~-~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~------~~~~~~e 311 (522)
T 3zxs_A 243 EALRAL----DHFIRESLPRFGDEQDAMLA-DDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGR------APLNAVE 311 (522)
T ss_dssp HHHHHH----HHHHHHTGGGTTTTTTCCBT-TBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTS------SCHHHHH
T ss_pred HHHHHH----HHHHHhhhhhhhhhccCccc-CCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcC------CchhhHH
Confidence 999999 99999999999999999976 4 6999999999999999999999987654321 2336778
Q ss_pred HHHHHhH-hHHHHHHHHHHh-CCCCcccccchhhhHhhhhhhccCchhhhhhHHHHHhCCCCchHHhHHHHHHHHhccch
Q 010783 312 TFLEELI-VRRELADNFCFY-QPNYDSLKGAWEWARKSLKDHASDKREHIYTKEQFEKAQTADPLWNASQMEMVYNGKMH 389 (501)
Q Consensus 312 ~fi~eL~-wRrEf~~~~~~~-~p~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~~W~~G~TG~P~vDAaMrqL~~tG~mh 389 (501)
+|++||+ || |||++++++ .|++...+. |.. .++ ..++|++|+|||||||||||||++|||||
T Consensus 312 ~firellgWR-EF~~~l~~~~~P~~~~~n~---~~~-------~~~-----l~~~~w~G~TG~P~VDA~MRqL~~TGwmH 375 (522)
T 3zxs_A 312 GFIRQILGWR-EYVRGIWTLSGPDYIRSNG---LGH-------SAA-----LPPLYWGKPTRMACLSAAVAQTRDLAYAH 375 (522)
T ss_dssp HHHHHHHTHH-HHHHHHHHHHGGGGGGCCT---TCC-------CBC-----CCGGGGTCCCSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHH-HHHHHHHHHhCcccccccc---ccc-------ccc-----chHHHhcCCCCCHHHHHHHHHHHHHhchh
Confidence 9999997 88 999999876 487753221 210 011 12345599999999999999999999999
Q ss_pred hhhHHHHh----ccc-ccCCCCHHHHHHHHHHHhhhccccC----CCCCCCcCcEEeecccCCCCCCCCCCc
Q 010783 390 GFMRMYWA----KKI-LEWTTGPEEALAIAIYLNDKYEIDG----RDPNGYVGCMWSICGVHDQGWKERPVF 452 (501)
Q Consensus 390 nr~Rm~va----k~L-idWr~G~~~a~~~~~~f~~~yliD~----d~a~n~g~wqw~a~G~~~~~~~~~pyf 452 (501)
||+||||| |+| |||+.|++ ||+++ |||| ..||++|||||++||+.+. |||+
T Consensus 376 nr~RmmVasfl~k~L~idWr~G~~-------wF~~~-LiD~~~Wv~~~N~~Gm~q~a~Gg~~~~----KPY~ 435 (522)
T 3zxs_A 376 HIQRLMVTGNFALLAGVDPAEVHE-------WYLSV-YIDALEWVEAPNTIGMSQFADHGLLGS----KPYV 435 (522)
T ss_dssp HHHHHHTHHHHHHHTTBCHHHHHH-------HHHHH-CTTCCHHHHHHHHHTTTTCCSSSTTCS----SCCC
T ss_pred HHHHHHHHHHHHHHcCCChHHHHH-------HHHHH-hcchhhhhhccccccchheecCCccCC----CCCC
Confidence 99999997 778 99999999 99999 8999 5799999999999776654 7987
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=93.30 E-value=0.56 Score=39.70 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=64.4
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCcccc-c---------hhHHHHHHHHHHHHHHHHHhhcCC---eEEEE
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGA-K---------ARQLGFMLRGLRLLQRNIEETFQI---LFFLF 104 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~-~---------~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~ 104 (501)
|.--....+|..|+..|.+.+.+|..+++.++..... . .....-..+.|..+.+.+ ++.|+ ...+.
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~ 91 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFV-ATTSAPNLKTEIS 91 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSCCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HhcCCcceEEEEe
Confidence 3334455788888888877778899999988643211 1 122334456677777888 77777 56778
Q ss_pred ecChhhHHHH-HHHHhCCCEEEE
Q 010783 105 QGEAEDNIPN-FVRECGASLLVT 126 (501)
Q Consensus 105 ~G~~~~~l~~-L~~~~~i~~V~~ 126 (501)
.|++.+.|.+ .+++.+++-|+.
T Consensus 92 ~g~~~~~I~~~~a~~~~~dliV~ 114 (146)
T 3s3t_A 92 YGIPKHTIEDYAKQHPEIDLIVL 114 (146)
T ss_dssp EECHHHHHHHHHHHSTTCCEEEE
T ss_pred cCChHHHHHHHHHhhcCCCEEEE
Confidence 8999999999 999999999999
No 15
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=93.12 E-value=0.66 Score=40.26 Aligned_cols=87 Identities=23% Similarity=0.106 Sum_probs=65.1
Q ss_pred CC-CccCCHHHHHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEE----EecChhhHH
Q 010783 38 DQ-RVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL----FQGEAEDNI 112 (501)
Q Consensus 38 DL-Rl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v----~~G~~~~~l 112 (501)
|. --....+|..|+..|...+.+|..|++.++... .......-..+.|+.+.+.+ ++.|++..+ ..|++.+.|
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~v~~G~~~~~I 109 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR-TKDEDIIEAKETLSWAVSII-RKEGAEGEEHLLVRGKEPPDDI 109 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT-SCHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEEESSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc-ccHHHHHHHHHHHHHHHHHH-HhcCCCceEEEEecCCCHHHHH
Confidence 55 445567888888888777779999999875421 11233344566778888888 888887653 349999999
Q ss_pred HHHHHHhCCCEEEE
Q 010783 113 PNFVRECGASLLVT 126 (501)
Q Consensus 113 ~~L~~~~~i~~V~~ 126 (501)
.+.+++.+++-|+.
T Consensus 110 ~~~a~~~~~DLIV~ 123 (155)
T 3dlo_A 110 VDFADEVDAIAIVI 123 (155)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999999
No 16
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=92.78 E-value=0.92 Score=38.12 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHhhCCCCEEEEEEecCCccc--c-------chhHHHHHHHHHHHHHHHHHhhcCC-----eEEEEecCh
Q 010783 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLG--A-------KARQLGFMLRGLRLLQRNIEETFQI-----LFFLFQGEA 108 (501)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~--~-------~~~r~~Fl~esL~~L~~~L~~~~G~-----~L~v~~G~~ 108 (501)
...+|..|+..|.+.+.+|..+++.++.... . .........+.++.|++-+ ++.|+ ...+..|++
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~v~~~~~~g~~ 94 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIA-KKFSIPEDRMHFHVAEGSP 94 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH-TTSCCCGGGEEEEEEESCH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHH-HHcCCCCCceEEEEEecCh
Confidence 5678888988887777889999998863210 0 0112334456677777777 77775 466788999
Q ss_pred hhHHHHHHHHhCCCEEEE
Q 010783 109 EDNIPNFVRECGASLLVT 126 (501)
Q Consensus 109 ~~~l~~L~~~~~i~~V~~ 126 (501)
.+.|.+.+++.+++-|+.
T Consensus 95 ~~~I~~~a~~~~~dliV~ 112 (143)
T 3fdx_A 95 KDKILALAKSLPADLVII 112 (143)
T ss_dssp HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 999999999999999999
No 17
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=92.66 E-value=0.87 Score=39.10 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEecCCccc----c----chhHHHHHHHHHHHHHHHHHhhcCC---eEEEEe-cChh
Q 010783 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----A----KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQ-GEAE 109 (501)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~----~~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~~-G~~~ 109 (501)
....+|..|+..|.+.+.+|..+++.++.... . ......-..+.|..+.+.+ ++.|+ ...+.. |++.
T Consensus 29 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~~~g~~~ 107 (156)
T 3fg9_A 29 SSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLA-EQRGVNQVEPLVYEGGDVD 107 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSSEEEEEEECSCHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEEeCCCHH
Confidence 34567888888887777889999999864321 0 1122344556777777888 77887 346677 9999
Q ss_pred hHHHHH-HHHhCCCEEEE
Q 010783 110 DNIPNF-VRECGASLLVT 126 (501)
Q Consensus 110 ~~l~~L-~~~~~i~~V~~ 126 (501)
+.|.+. +++.+++-|+.
T Consensus 108 ~~I~~~~a~~~~~DlIV~ 125 (156)
T 3fg9_A 108 DVILEQVIPEFKPDLLVT 125 (156)
T ss_dssp HHHHHTHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 999998 99999999999
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=92.50 E-value=0.72 Score=39.22 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=58.8
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCcc---c--------cchhHHHHHHHHHHHHHHHHHhhcCC---eEEE
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFL---G--------AKARQLGFMLRGLRLLQRNIEETFQI---LFFL 103 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~---~--------~~~~r~~Fl~esL~~L~~~L~~~~G~---~L~v 103 (501)
|.--....+|..|+..|.+.+.+|..+++.++... . ..........++.+.|++-. ++.|+ ...+
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~ 92 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG-NTLGIDPAHRWL 92 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH-HHHTCCGGGEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH-HHcCCCcceEEE
Confidence 33334467888888888777788999999886321 0 01122333334444444444 55564 4788
Q ss_pred EecChhhHHHHHHHHhCCCEEEEc
Q 010783 104 FQGEAEDNIPNFVRECGASLLVTD 127 (501)
Q Consensus 104 ~~G~~~~~l~~L~~~~~i~~V~~~ 127 (501)
..|++.+.|.+.+++.+++-|+.-
T Consensus 93 ~~g~~~~~I~~~a~~~~~dliV~G 116 (150)
T 3tnj_A 93 VWGEPREEIIRIAEQENVDLIVVG 116 (150)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999999993
No 19
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=91.61 E-value=0.94 Score=39.50 Aligned_cols=85 Identities=13% Similarity=-0.007 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEecCCccc-----cc--------------hhHHHHHHHHHHHHHHHHHhhcCCe--
Q 010783 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----AK--------------ARQLGFMLRGLRLLQRNIEETFQIL-- 100 (501)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-----~~--------------~~r~~Fl~esL~~L~~~L~~~~G~~-- 100 (501)
....+|..|+..|.+.+.+|..|++.++.... .. .....-..+.|+.+.+.+ +..|++
T Consensus 17 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~ 95 (170)
T 2dum_A 17 GAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEV-KRAFRAKN 95 (170)
T ss_dssp HHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHH-HHHTTCSE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcee
Confidence 34468888888887777789999998764211 00 111223345566777777 666764
Q ss_pred E--EEEecChhhHHHHHHHHhCCCEEEEc
Q 010783 101 F--FLFQGEAEDNIPNFVRECGASLLVTD 127 (501)
Q Consensus 101 L--~v~~G~~~~~l~~L~~~~~i~~V~~~ 127 (501)
. .+..|++.+.|.+.+++.+++-|+.-
T Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~DlIV~G 124 (170)
T 2dum_A 96 VRTIIRFGIPWDEIVKVAEEENVSLIILP 124 (170)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTCSEEEEE
T ss_pred eeeEEecCChHHHHHHHHHHcCCCEEEEC
Confidence 3 56789999999999999999999993
No 20
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=91.55 E-value=1.4 Score=37.18 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEecCCc-c-c------------cchhHHHHHHHHHHHHHHHHHhhcCC-----eEE
Q 010783 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQF-L-G------------AKARQLGFMLRGLRLLQRNIEETFQI-----LFF 102 (501)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~-~-~------------~~~~r~~Fl~esL~~L~~~L~~~~G~-----~L~ 102 (501)
....+|..|+..|.+.+.+|..+++.++.. . . .......-..+.|+.+.+.+ ++.|+ ...
T Consensus 14 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~~~ 92 (147)
T 3hgm_A 14 GAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRA-TELGVPADKVRAF 92 (147)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHH-HhcCCCccceEEE
Confidence 344678888888877778899999987632 1 0 01222344556778888888 87785 456
Q ss_pred EEecChhhHHHHHHHHhCCCEEEEc
Q 010783 103 LFQGEAEDNIPNFVRECGASLLVTD 127 (501)
Q Consensus 103 v~~G~~~~~l~~L~~~~~i~~V~~~ 127 (501)
+..|++.+.|.+.+++.+++-|+.-
T Consensus 93 ~~~g~~~~~I~~~a~~~~~dliV~G 117 (147)
T 3hgm_A 93 VKGGRPSRTIVRFARKRECDLVVIG 117 (147)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEC
T ss_pred EecCCHHHHHHHHHHHhCCCEEEEe
Confidence 7789999999999999999999993
No 21
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=90.42 E-value=1 Score=39.29 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=57.8
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEE--EEecCCcc--ccc-------hhHHHHHHHHHHHHHHHHHhhcCCe---EEE
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVA--FNLFDQFL--GAK-------ARQLGFMLRGLRLLQRNIEETFQIL---FFL 103 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~v--fi~dp~~~--~~~-------~~r~~Fl~esL~~L~~~L~~~~G~~---L~v 103 (501)
|.--....+|..|+..|. .+.+|..| ++.++... ... .....-..+.|..+.+.+ ++.|++ ..+
T Consensus 25 D~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~gv~~v~~~v 102 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA-HNAGAKNVEERP 102 (163)
T ss_dssp CSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHH-HTTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHcCCCeEEEEE
Confidence 333344568888888887 77788888 88765321 000 000011234567777778 777876 567
Q ss_pred EecChhhHHHHHHHHhCCCEEEEc
Q 010783 104 FQGEAEDNIPNFVRECGASLLVTD 127 (501)
Q Consensus 104 ~~G~~~~~l~~L~~~~~i~~V~~~ 127 (501)
..|++.+.|.+.+++.+++-|+.-
T Consensus 103 ~~G~~~~~I~~~a~~~~~DLIV~G 126 (163)
T 1tq8_A 103 IVGAPVDALVNLADEEKADLLVVG 126 (163)
T ss_dssp ECSSHHHHHHHHHHHTTCSEEEEE
T ss_pred ecCCHHHHHHHHHHhcCCCEEEEC
Confidence 789999999999999999999993
No 22
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=89.22 E-value=2 Score=36.98 Aligned_cols=83 Identities=10% Similarity=0.106 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHhhCCCCEEEEEEecCC-----cc-ccc-------hh-----------HHHHHHHHHHHHHHHHHhhcC
Q 010783 43 DNWALIHAVDQANKNNVPVAVAFNLFDQ-----FL-GAK-------AR-----------QLGFMLRGLRLLQRNIEETFQ 98 (501)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~-----~~-~~~-------~~-----------r~~Fl~esL~~L~~~L~~~~G 98 (501)
...||..|+..|...+.+|..++++++. .. ..+ +. ...-..+.|..+.+.+ +..|
T Consensus 18 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g 96 (162)
T 1mjh_A 18 AEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL-EDVG 96 (162)
T ss_dssp HHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHcC
Confidence 4467888888877777789999998763 10 110 10 0122344566677777 7778
Q ss_pred Ce--EEEEecChhhHHHHHHHHhCCCEEEE
Q 010783 99 IL--FFLFQGEAEDNIPNFVRECGASLLVT 126 (501)
Q Consensus 99 ~~--L~v~~G~~~~~l~~L~~~~~i~~V~~ 126 (501)
++ ..+..|++.+.|.+.+++.+++-|+.
T Consensus 97 ~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~ 126 (162)
T 1mjh_A 97 FKVKDIIVVGIPHEEIVKIAEDEGVDIIIM 126 (162)
T ss_dssp CEEEEEEEEECHHHHHHHHHHHTTCSEEEE
T ss_pred CceEEEEcCCCHHHHHHHHHHHcCCCEEEE
Confidence 76 45677999999999999999999998
No 23
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=88.65 E-value=3.1 Score=34.55 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHH-hhCCCCEEEEEEecCCccccc---------hhHH-HHHHHHHHHHHHHHHhhcCCe--EEEEecCh
Q 010783 42 RDNWALIHAVDQA-NKNNVPVAVAFNLFDQFLGAK---------ARQL-GFMLRGLRLLQRNIEETFQIL--FFLFQGEA 108 (501)
Q Consensus 42 ~DN~aL~~A~~~a-~~~~~~vl~vfi~dp~~~~~~---------~~r~-~Fl~esL~~L~~~L~~~~G~~--L~v~~G~~ 108 (501)
....+|..|+..| .+.+.+|..+++.++...... .... .-..+.|+.+.+.+ ++.|++ ..+..|++
T Consensus 13 ~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~v~~g~~ 91 (138)
T 3idf_A 13 ACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFF-TEKGINPFVVIKEGEP 91 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCCCEEEEEESCH
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCeEEEEecCCh
Confidence 3456788888888 777778999999987532110 0111 33445677777777 777765 67778999
Q ss_pred hhHHHHHHHHhCCCEEEE
Q 010783 109 EDNIPNFVRECGASLLVT 126 (501)
Q Consensus 109 ~~~l~~L~~~~~i~~V~~ 126 (501)
.+.|.+.++ +++-|+.
T Consensus 92 ~~~I~~~a~--~~dliV~ 107 (138)
T 3idf_A 92 VEMVLEEAK--DYNLLII 107 (138)
T ss_dssp HHHHHHHHT--TCSEEEE
T ss_pred HHHHHHHHh--cCCEEEE
Confidence 999999988 9999998
No 24
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=86.87 E-value=9.5 Score=36.56 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHhhC--CCCEEEEEEecCCcccc---------chhHHHHHHHHHHHHHHHHHhhcCC---eEEEEecChh
Q 010783 44 NWALIHAVDQANKN--NVPVAVAFNLFDQFLGA---------KARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAE 109 (501)
Q Consensus 44 N~aL~~A~~~a~~~--~~~vl~vfi~dp~~~~~---------~~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~~G~~~ 109 (501)
..+|..|...|... +.+|..|++.++..... .........++.+.|++-+ +++|+ ...+..|++.
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~v~~g~~~ 255 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELR-QKFSIPEEKTHVKEGLPE 255 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHH-HHhCCCcccEEEecCCcH
Confidence 56788888877766 77899999987643210 1122233334445555555 66675 4788899999
Q ss_pred hHHHHHHHHhCCCEEEE-cCCcchHHHHHHHHHHHHh-C-CCceEEEEecce
Q 010783 110 DNIPNFVRECGASLLVT-DFSPLREIRRCKDKICNRV-S-DSVTIHEVDAHN 158 (501)
Q Consensus 110 ~~l~~L~~~~~i~~V~~-~~~p~~~~~~rd~~v~~~l-~-~gi~~~~~~~~~ 158 (501)
+.|.+.+++.+++-|++ .+......+..-..+.+.+ . ..+++-.+....
T Consensus 256 ~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 256 QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCC
Confidence 99999999999999998 3322222233345565554 4 578887765433
No 25
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=86.51 E-value=2.7 Score=34.99 Aligned_cols=83 Identities=16% Similarity=0.019 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHhhCCCCEEEEEEecCCccccc---hh--HHHHHHHHHHHHHHHHHhhcCC---eEEEEecChhhHHHH
Q 010783 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLGAK---AR--QLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIPN 114 (501)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~---~~--r~~Fl~esL~~L~~~L~~~~G~---~L~v~~G~~~~~l~~ 114 (501)
...+|..|+..|.+.+.+|..+++.++.....+ +. .....-++-+.|++-. +..|+ ...+..|++.+.|.+
T Consensus 15 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~g~~~~~I~~ 93 (137)
T 2z08_A 15 ARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEAR-ALTGVPKEDALLLEGVPAEAILQ 93 (137)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHH-HHHCCCGGGEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCccEEEEEecCHHHHHHH
Confidence 346788888888777778999999875321111 10 0001111222222222 22565 567788999999999
Q ss_pred HHHHhCCCEEEE
Q 010783 115 FVRECGASLLVT 126 (501)
Q Consensus 115 L~~~~~i~~V~~ 126 (501)
.+++.+++-|+.
T Consensus 94 ~a~~~~~dliV~ 105 (137)
T 2z08_A 94 AARAEKADLIVM 105 (137)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999999
No 26
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=85.35 E-value=4.8 Score=38.37 Aligned_cols=107 Identities=15% Similarity=0.033 Sum_probs=72.4
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCe--EEEEecChhhHHHHH
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQIL--FFLFQGEAEDNIPNF 115 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~--L~v~~G~~~~~l~~L 115 (501)
|.--....+|..|...|...+.+|..+++.++.. -.+.++++.+.| ++.|++ ..+..|++.+.|.+.
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~I~~~ 246 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------KTADLRVMEEVI-GAEGIEVHVHIESGTPHKAILAK 246 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------CHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------HHHHHHHHHHHH-HHcCCcEEEEEecCCHHHHHHHH
Confidence 5555566778888887766677899899987643 234677888888 888876 456679999999999
Q ss_pred HHHhCCCEEEE-cCCcchHHHHHHHHHHHHh-C-CCceEEEEe
Q 010783 116 VRECGASLLVT-DFSPLREIRRCKDKICNRV-S-DSVTIHEVD 155 (501)
Q Consensus 116 ~~~~~i~~V~~-~~~p~~~~~~rd~~v~~~l-~-~gi~~~~~~ 155 (501)
+++.+++-|+. .+......+..-..+.+.+ . ..+++-.+.
T Consensus 247 a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 247 REEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 99999999988 3322222122223333332 2 467766654
No 27
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=82.62 E-value=16 Score=31.57 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHhh---CCCCEEEEEEecCCccc--------cchh--------HHHHHHHHHHHHHHHHHhhcCCeE--E
Q 010783 44 NWALIHAVDQANK---NNVPVAVAFNLFDQFLG--------AKAR--------QLGFMLRGLRLLQRNIEETFQILF--F 102 (501)
Q Consensus 44 N~aL~~A~~~a~~---~~~~vl~vfi~dp~~~~--------~~~~--------r~~Fl~esL~~L~~~L~~~~G~~L--~ 102 (501)
..+|..|+..|.+ .+.+|..|++.++.... .... ...-..+.|..+.+.+ ++.|+.. .
T Consensus 28 ~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~ 106 (175)
T 2gm3_A 28 KRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKC-HEIGVGCEAW 106 (175)
T ss_dssp HHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHTCEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCceEEE
Confidence 3467777775533 34578888887643110 0011 1112335566677777 7778764 4
Q ss_pred EEecChhhHHHHHHHHhCCCEEEE
Q 010783 103 LFQGEAEDNIPNFVRECGASLLVT 126 (501)
Q Consensus 103 v~~G~~~~~l~~L~~~~~i~~V~~ 126 (501)
+..|++.+.|.+.+++.+++-|++
T Consensus 107 v~~G~~~~~I~~~a~~~~~DLIVm 130 (175)
T 2gm3_A 107 IKTGDPKDVICQEVKRVRPDFLVV 130 (175)
T ss_dssp EEESCHHHHHHHHHHHHCCSEEEE
T ss_pred EecCCHHHHHHHHHHHhCCCEEEE
Confidence 668999999999999999999999
No 28
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=82.45 E-value=6.6 Score=32.56 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=67.3
Q ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEecC--Ccc-ccchh-HHH----HHHHHHHHHHHHHHhhcCCe---EEEEecChh
Q 010783 41 VRDNWALIHAVDQANKNNVPVAVAFNLFD--QFL-GAKAR-QLG----FMLRGLRLLQRNIEETFQIL---FFLFQGEAE 109 (501)
Q Consensus 41 l~DN~aL~~A~~~a~~~~~~vl~vfi~dp--~~~-~~~~~-r~~----Fl~esL~~L~~~L~~~~G~~---L~v~~G~~~ 109 (501)
-....+|..|+..|.+.+.+|..+++.++ ... ..... ... ..-++...|++-+ ++.|++ ..+..|++.
T Consensus 13 ~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~g~~~ 91 (141)
T 1jmv_A 13 EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLA-ESVDYPISEKLSGSGDLG 91 (141)
T ss_dssp TTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHH-HHSSSCCCCEEEEEECHH
T ss_pred hhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHH-HHcCCCceEEEEecCCHH
Confidence 34456888888888777778998999843 211 10000 000 0112333444445 556764 467789999
Q ss_pred hHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHh-C-CCceEEEEe
Q 010783 110 DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRV-S-DSVTIHEVD 155 (501)
Q Consensus 110 ~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l-~-~gi~~~~~~ 155 (501)
+.|.+.+++.+++-|+.-.......+ . -.+.+.+ . .++++..+.
T Consensus 92 ~~I~~~a~~~~~dliV~G~~~~~~~~-l-gs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 92 QVLSDAIEQYDVDLLVTGHHQDFWSK-L-MSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCHHH-H-HHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCchhhh-h-cchHHHHHhcCCCCEEEee
Confidence 99999999999999998322322212 2 3555544 3 578877664
No 29
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=82.13 E-value=7.3 Score=37.01 Aligned_cols=82 Identities=16% Similarity=0.085 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHhhCCCCEEEEEEecCCccccc----hhHHHHHHHHHHHHHHHHHhhcCC---eEEEEecChhhHHHHHH
Q 010783 44 NWALIHAVDQANKNNVPVAVAFNLFDQFLGAK----ARQLGFMLRGLRLLQRNIEETFQI---LFFLFQGEAEDNIPNFV 116 (501)
Q Consensus 44 N~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~----~~r~~Fl~esL~~L~~~L~~~~G~---~L~v~~G~~~~~l~~L~ 116 (501)
..+|..|...|...+.+|..+++.++...... ........+..+.|++-+ ++.|+ ...+..|++.+.|.+.+
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~v~~g~~~~~I~~~a 233 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ-AEYGFSDEQLHIEEGPADVLIPRTA 233 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH-HHHTCCTTTEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH-HHcCCCcceEEEeccCHHHHHHHHH
Confidence 56788888888777788999999886432110 111122223344444445 55575 46888999999999999
Q ss_pred HHhCCCEEEE
Q 010783 117 RECGASLLVT 126 (501)
Q Consensus 117 ~~~~i~~V~~ 126 (501)
++.+++-|++
T Consensus 234 ~~~~~dLiVm 243 (290)
T 3mt0_A 234 QKLDAVVTVI 243 (290)
T ss_dssp HHHTCSEEEE
T ss_pred HhcCCCEEEE
Confidence 9999999998
No 30
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=78.80 E-value=9.9 Score=31.34 Aligned_cols=88 Identities=17% Similarity=0.015 Sum_probs=57.7
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEe-cC--Ccc--c---c--ch-h---HHHHHHHHHHHHHHH--HHhhcC-Ce
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNL-FD--QFL--G---A--KA-R---QLGFMLRGLRLLQRN--IEETFQ-IL 100 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~-dp--~~~--~---~--~~-~---r~~Fl~esL~~L~~~--L~~~~G-~~ 100 (501)
|.--....+|..|+..|.+.+.+|..+++. ++ ... . . .. . ...-..+.|+.+ +. + ...| +.
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~ 89 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT-GSTEIPG 89 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH-SCCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh-ccCCcce
Confidence 333445678999998887777889999998 62 110 0 0 00 0 111123344455 44 3 3344 56
Q ss_pred EEEEecChhhHHHHHHHHhCCCEEEEc
Q 010783 101 FFLFQGEAEDNIPNFVRECGASLLVTD 127 (501)
Q Consensus 101 L~v~~G~~~~~l~~L~~~~~i~~V~~~ 127 (501)
..+..|++.+.|.+.+++.+++-|+.-
T Consensus 90 ~~~~~g~~~~~I~~~a~~~~~dliV~G 116 (138)
T 1q77_A 90 VEYRIGPLSEEVKKFVEGKGYELVVWA 116 (138)
T ss_dssp EEEECSCHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEEcCCHHHHHHHHHHhcCCCEEEEe
Confidence 678889999999999999999999994
No 31
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=74.83 E-value=10 Score=35.98 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=61.2
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEE--E-ecChhhHHHH
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFL--F-QGEAEDNIPN 114 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v--~-~G~~~~~l~~ 114 (501)
|.--....+|..|+..|.+.+.+|..+++.+|. .. .+.|+++.+.+ +..|++... . .|++.+.|.+
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~-----~~-----~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 83 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR-----DH-----SAALNDLAQEL-REEGYSVSTNQAWKDSLHQTIIA 83 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS-----CC-----HHHHHHHHHHH-HHTTCCEEEEEECSSSHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH-----HH-----HHHHHHHHHHH-hhCCCeEEEEEEeCCCHHHHHHH
Confidence 666778899999999888888889999998751 11 13466677777 777877544 3 4789999999
Q ss_pred HHHHhCCCEEEEc
Q 010783 115 FVRECGASLLVTD 127 (501)
Q Consensus 115 L~~~~~i~~V~~~ 127 (501)
.+++.+++-|+.-
T Consensus 84 ~a~~~~~dliV~G 96 (290)
T 3mt0_A 84 EQQAEGCGLIIKQ 96 (290)
T ss_dssp HHHHHTCSEEEEE
T ss_pred HHHhcCCCEEEEe
Confidence 9999999999994
No 32
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=73.35 E-value=29 Score=32.99 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=61.5
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccc----cc-hhHH-------HHHHHHHHHHHHHHHhhcCCeE--EE
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AK-ARQL-------GFMLRGLRLLQRNIEETFQILF--FL 103 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~-~~r~-------~Fl~esL~~L~~~L~~~~G~~L--~v 103 (501)
|.--....+|..|+..|.+.+.+|..+++.++.... .+ .... .-..+.|+.+.+.+ +..|++. .+
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~~~~ 93 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYY-LEAGIQIDIKV 93 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCeEEEEE
Confidence 666677889999999888888899989987642111 00 1111 11234556666666 6667754 44
Q ss_pred E-ecChhhHHHHHHHHhCCCEEEE
Q 010783 104 F-QGEAEDNIPNFVRECGASLLVT 126 (501)
Q Consensus 104 ~-~G~~~~~l~~L~~~~~i~~V~~ 126 (501)
. .|++.+.|.+.+++.+++-|+.
T Consensus 94 ~~~g~~~~~i~~~a~~~~~DLiV~ 117 (319)
T 3olq_A 94 IWHNRPYEAIIEEVITDKHDLLIK 117 (319)
T ss_dssp EECSCHHHHHHHHHHHHTCSEEEE
T ss_pred EecCChHHHHHHHHHhcCCCEEEE
Confidence 5 7999999999999999999998
No 33
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=73.27 E-value=15 Score=34.76 Aligned_cols=88 Identities=16% Similarity=-0.008 Sum_probs=63.8
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccc----------cchhHHHHHHHHHHHHHHHHHhhcCCeEEE---E
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----------AKARQLGFMLRGLRLLQRNIEETFQILFFL---F 104 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----------~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v---~ 104 (501)
|.--....+|..|+..|.+.+.+|..+++.++.... .......-..+.|..+.+.+ ++.|++... .
T Consensus 30 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~~~~v~ 108 (294)
T 3loq_A 30 DLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKI-EAAGIKAEVIKPF 108 (294)
T ss_dssp CSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEECSSC
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcceeEee
Confidence 444455677888888888778899999998764311 01122334556778888888 888988765 4
Q ss_pred -ecChhhHHHHHHHHhCCCEEEEcC
Q 010783 105 -QGEAEDNIPNFVRECGASLLVTDF 128 (501)
Q Consensus 105 -~G~~~~~l~~L~~~~~i~~V~~~~ 128 (501)
.|++.+.| .+++.+++-|+.-.
T Consensus 109 ~~g~~~~~I--~a~~~~~DliV~G~ 131 (294)
T 3loq_A 109 PAGDPVVEI--IKASENYSFIAMGS 131 (294)
T ss_dssp CEECHHHHH--HHHHTTSSEEEEEC
T ss_pred ccCChhHhe--eeccCCCCEEEEcC
Confidence 79999999 88999999999943
No 34
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=64.87 E-value=17 Score=33.77 Aligned_cols=82 Identities=18% Similarity=0.023 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHhhCCCCEEEEEEecCCccc------c--------------chhHHHHHHHHHHHHHHHHHhhcCCeE-
Q 010783 43 DNWALIHAVDQANKNNVPVAVAFNLFDQFLG------A--------------KARQLGFMLRGLRLLQRNIEETFQILF- 101 (501)
Q Consensus 43 DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~------~--------------~~~r~~Fl~esL~~L~~~L~~~~G~~L- 101 (501)
...+|..|+..|.+.+.+|..+++.++.... . ......-..+.|..+.+.+ ++.|++.
T Consensus 13 s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~~~~ 91 (268)
T 3ab8_A 13 ARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSA-LAAGVAVE 91 (268)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCeE
Confidence 4468888888887777899999998743211 0 0011222345566677777 7778654
Q ss_pred -EEEecChhhHHHHHHHHhCCCEEEEc
Q 010783 102 -FLFQGEAEDNIPNFVRECGASLLVTD 127 (501)
Q Consensus 102 -~v~~G~~~~~l~~L~~~~~i~~V~~~ 127 (501)
.+..|++.+.|.+. +.+++-|+.-
T Consensus 92 ~~~~~g~~~~~I~~~--~~~~dliV~G 116 (268)
T 3ab8_A 92 AVLEEGVPHEAILRR--ARAADLLVLG 116 (268)
T ss_dssp EEEEEECHHHHHHHH--HTTCSEEEEE
T ss_pred EEEecCCHHHHHHhh--ccCCCEEEEe
Confidence 56679999999888 8899999993
No 35
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=64.09 E-value=11 Score=36.23 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=54.1
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccc----cc-hhHHHHHHHHHHHHHHHHHhh--cC--CeEEEEecCh
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLG----AK-ARQLGFMLRGLRLLQRNIEET--FQ--ILFFLFQGEA 108 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~----~~-~~r~~Fl~esL~~L~~~L~~~--~G--~~L~v~~G~~ 108 (501)
|..-....+|..|...|...+.+|..|++.++.... .. .....-..+.|+++.+.+ .+ .| +...+..|++
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~g~~ 257 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGW-QERYPNVAITRVVVRDQP 257 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTH-HHHCTTSCEEEEEESSCH
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHH-HhhCCCCcEEEEEEcCCH
Confidence 555555668888888887777789999998764211 00 111111222333333344 32 24 4556778999
Q ss_pred hhHHHHHHHHhCCCEEEE
Q 010783 109 EDNIPNFVRECGASLLVT 126 (501)
Q Consensus 109 ~~~l~~L~~~~~i~~V~~ 126 (501)
.+.|.+.++ +++-|++
T Consensus 258 ~~~I~~~a~--~adliV~ 273 (309)
T 3cis_A 258 ARQLVQRSE--EAQLVVV 273 (309)
T ss_dssp HHHHHHHHT--TCSEEEE
T ss_pred HHHHHHhhC--CCCEEEE
Confidence 999999987 8999988
No 36
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=63.27 E-value=13 Score=34.92 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=49.0
Q ss_pred hhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEe--cC---hhhHHHHHHHHhCCCEEEE-cC
Q 010783 55 NKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQ--GE---AEDNIPNFVRECGASLLVT-DF 128 (501)
Q Consensus 55 ~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~--G~---~~~~l~~L~~~~~i~~V~~-~~ 128 (501)
.+.|..|++++..-+... .+..|-...+..++... +.+|+++++.. |+ -.+.+.+++++.+|+.|++ +.
T Consensus 25 ~~~G~eV~~L~~~~~~~~----~s~~~h~~~~e~a~~~A-~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 25 IKNRFSVKFLVTMVSENE----ESYMYHTINANLTDLQA-RALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp HHTTCEEEEEEEEECC------------CCSSSHHHHHH-HHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred HHcCCeEEEEEEEcCCCC----CccccCCccHHHHHHHH-HHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 346778888765433211 11111112234455556 77899999876 32 2455666777779999998 43
Q ss_pred CcchHHHHHHHHHHHHhCCCceEEE
Q 010783 129 SPLREIRRCKDKICNRVSDSVTIHE 153 (501)
Q Consensus 129 ~p~~~~~~rd~~v~~~l~~gi~~~~ 153 (501)
. ..+.+.|.+++++.+ |+....
T Consensus 100 ~-s~yqr~r~e~vc~~~--gl~~~~ 121 (237)
T 3rjz_A 100 A-SKYQRKRIEKVAKEL--GLEVYT 121 (237)
T ss_dssp --CCSHHHHHHHHHHHT--TCEEEC
T ss_pred c-hHHHHHHHHHHHHHc--CCEEEc
Confidence 1 122245666666655 665433
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=53.50 E-value=40 Score=32.04 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEecCCccc-----cc-h---hHHHHHHHHHHHHHHHHHhhc-----CCeE--EEEe
Q 010783 42 RDNWALIHAVDQANKNNVPVAVAFNLFDQFLG-----AK-A---RQLGFMLRGLRLLQRNIEETF-----QILF--FLFQ 105 (501)
Q Consensus 42 ~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~-----~~-~---~r~~Fl~esL~~L~~~L~~~~-----G~~L--~v~~ 105 (501)
....+|..|+..|.+.+.+|..+++.++.... .. . ....-..+.|.++.+.+ ++. |++. .+..
T Consensus 31 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 109 (309)
T 3cis_A 31 AAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVV-EQASLRAGPPTVHSEIVP 109 (309)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCSSSCCSCEEEEEES
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHH-HHhcccCCCceEEEEEec
Confidence 34568888888887777899999998864321 01 1 11222344566667777 654 6554 5567
Q ss_pred cChhhHHHHHHHHhCCCEEEEc
Q 010783 106 GEAEDNIPNFVRECGASLLVTD 127 (501)
Q Consensus 106 G~~~~~l~~L~~~~~i~~V~~~ 127 (501)
|++.+.|.+.++ +++-|+.-
T Consensus 110 g~~~~~I~~~a~--~~DliV~G 129 (309)
T 3cis_A 110 AAAVPTLVDMSK--DAVLMVVG 129 (309)
T ss_dssp SCHHHHHHHHGG--GEEEEEEE
T ss_pred CCHHHHHHHHhc--CCCEEEEC
Confidence 999999998876 78888883
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=40.13 E-value=37 Score=31.35 Aligned_cols=77 Identities=17% Similarity=0.041 Sum_probs=53.7
Q ss_pred CCCccCCHHHHHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeE--EEEecChhhHHHHH
Q 010783 38 DQRVRDNWALIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILF--FLFQGEAEDNIPNF 115 (501)
Q Consensus 38 DLRl~DN~aL~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L--~v~~G~~~~~l~~L 115 (501)
|..-....+|..|...|...+.+|..+++.++. . -..+.++++.+.| ++.|++. .+..|++.+.|.+.
T Consensus 162 d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----~----~~~~~l~~~~~~l-~~~~~~~~~~~~~g~~~~~i~~~ 231 (268)
T 3ab8_A 162 DASESAVRALHALAPLARALGLGVRVVSVHEDP-----A----RAEAWALEAEAYL-RDHGVEASALVLGGDAADHLLRL 231 (268)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----H----HHHHHHHHHHHHH-HHTTCCEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----H----HHHHHHHHHHHHH-HHcCCceEEEEeCCChHHHHHHH
Confidence 444445567877777776666788888887652 1 1234667788888 8888765 45679999999998
Q ss_pred HHHhCCCEEEE
Q 010783 116 VRECGASLLVT 126 (501)
Q Consensus 116 ~~~~~i~~V~~ 126 (501)
+++. +-|++
T Consensus 232 a~~~--dliV~ 240 (268)
T 3ab8_A 232 QGPG--DLLAL 240 (268)
T ss_dssp CCTT--EEEEE
T ss_pred HHhC--CEEEE
Confidence 8876 55555
No 39
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=39.41 E-value=1.3e+02 Score=28.64 Aligned_cols=72 Identities=7% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecC--h---hhHHHHHHHH-hCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEE
Q 010783 80 GFMLRGLRLLQRNIEETFQILFFLFQGE--A---EDNIPNFVRE-CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHE 153 (501)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~--~---~~~l~~L~~~-~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~ 153 (501)
.|..+-+..+++.+ +++|..+.+...+ + .+.+..++.. .+++.|++.-.... ....++...+.||++..
T Consensus 17 ~f~~~~~~g~~~~a-~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~----~~~~~~~~~~~giPvV~ 91 (350)
T 3h75_A 17 TFWVSYSQFMQAAA-RDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYV----APQILRLSQGSGIKLFI 91 (350)
T ss_dssp HHHHHHHHHHHHHH-HHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSH----HHHHHHHHTTSCCEEEE
T ss_pred hHHHHHHHHHHHHH-HHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhh----HHHHHHHHHhCCCcEEE
Confidence 35666777788888 8889999888643 2 2345666665 79999988432221 12234433357999999
Q ss_pred Eec
Q 010783 154 VDA 156 (501)
Q Consensus 154 ~~~ 156 (501)
++.
T Consensus 92 ~~~ 94 (350)
T 3h75_A 92 VNS 94 (350)
T ss_dssp EES
T ss_pred EcC
Confidence 875
No 40
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=36.93 E-value=44 Score=29.73 Aligned_cols=43 Identities=14% Similarity=-0.017 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEE
Q 010783 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (501)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~ 126 (501)
...+.++-+.| ++.|+++.|..+.+...+..+++.++++.++.
T Consensus 94 ~~g~~~~l~~l-~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~ 136 (232)
T 3fvv_A 94 TVQAVDVVRGH-LAAGDLCALVTATNSFVTAPIARAFGVQHLIA 136 (232)
T ss_dssp CHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEE
Confidence 45667777788 88888888888888888888888888876655
No 41
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=35.35 E-value=1.2e+02 Score=25.08 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEE
Q 010783 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLL 124 (501)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V 124 (501)
+..|.++.+++ ++.|+.++.+..+..+.+.++++++++.-.
T Consensus 55 ~~~l~~~~~~~-~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 95 (163)
T 3gkn_A 55 GLDFNALLPEF-DKAGAKILGVSRDSVKSHDNFCAKQGFAFP 95 (163)
T ss_dssp HHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHhCCCce
Confidence 56899999999 999999999888888999999999987633
No 42
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=33.95 E-value=93 Score=26.81 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCE
Q 010783 83 LRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123 (501)
Q Consensus 83 ~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~ 123 (501)
+..|.++.+++ ++.|+.++.+..++.+.+.++++++++.-
T Consensus 71 l~~l~~l~~~~-~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f 110 (179)
T 3ixr_A 71 GLEFNLLLPQF-EQINATVLGVSRDSVKSHDSFCAKQGFTF 110 (179)
T ss_dssp HHHHHHHHHHH-HTTTEEEEEEESCCHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHcCCce
Confidence 46789999999 99999998888888888999999998763
No 43
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=33.60 E-value=93 Score=27.28 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred cCCeEEEEecChhhHHHHHHHH---hCCCEEEEc---CCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeC
Q 010783 97 FQILFFLFQGEAEDNIPNFVRE---CGASLLVTD---FSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPV 162 (501)
Q Consensus 97 ~G~~L~v~~G~~~~~l~~L~~~---~~i~~V~~~---~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p 162 (501)
+|+.+.+++.+.+..|...+.+ -+++.|+.| ++-... ++.+++. -++++.+++-..++..
T Consensus 57 ~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv------AlrDAL~~v~~P~VEVHiSNihaR 123 (167)
T 3kip_A 57 NDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV------GIRDALLGTAIPFIEVHITNVHQR 123 (167)
T ss_dssp SSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH------HHHHHHHHTTCCEEEEESSCGGGS
T ss_pred CCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccH------HHHHHHHhcCCCEEEEEcCCcccc
Confidence 6899999998877666665543 358889986 443332 3444442 4799999987666654
No 44
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=32.13 E-value=80 Score=31.38 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEE
Q 010783 86 LRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVT 126 (501)
Q Consensus 86 L~~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~ 126 (501)
+..+++-| +.+||+.+...|++.+.+..|+++--+..|++
T Consensus 146 ~~~i~~lL-~~~GIp~i~apgEADaqiA~La~~g~~~~I~S 185 (363)
T 3ory_A 146 VRDAKSLL-DAMGIPWVQAPAEGEAQAAYIVKKGDAYASAS 185 (363)
T ss_dssp HHHHHHHH-HHHTCCEEECSSCHHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHH-HHCCCCEEEeCccHHHHHHHHHHCCCeEEEEC
Confidence 66667777 77788888877777777777765434445554
No 45
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=31.69 E-value=1.3e+02 Score=25.92 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHHHHH---hhcCCeEEEEecChhhHHHHHHHH--hCCCEEEEc---CCcchHHHHHHHHHHHHhCCCceEEEEec
Q 010783 85 GLRLLQRNIE---ETFQILFFLFQGEAEDNIPNFVRE--CGASLLVTD---FSPLREIRRCKDKICNRVSDSVTIHEVDA 156 (501)
Q Consensus 85 sL~~L~~~L~---~~~G~~L~v~~G~~~~~l~~L~~~--~~i~~V~~~---~~p~~~~~~rd~~v~~~l~~gi~~~~~~~ 156 (501)
+|+++.+.|+ .++|+.+.+++.+.+..|...+.+ -+++.|+.| ++.... ..-++++....-++++.+++-
T Consensus 30 Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv--AlrDAl~~l~~~~~P~VEVHi 107 (151)
T 3u80_A 30 DLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSY--ALADAAHMVIDENLPLMEVHI 107 (151)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCH--HHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH--HHHHHHHHHhhcCCCEEEEEc
Confidence 4555555550 347999999998877666555443 247788886 444443 212233221123799999987
Q ss_pred ceEEeC
Q 010783 157 HNVVPV 162 (501)
Q Consensus 157 ~~l~~p 162 (501)
..++..
T Consensus 108 SNi~aR 113 (151)
T 3u80_A 108 SNPSAR 113 (151)
T ss_dssp SCCC--
T ss_pred CCcccc
Confidence 666654
No 46
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=30.25 E-value=2.3e+02 Score=24.13 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=42.8
Q ss_pred hhcCCeEEEEecChhhHHHHHHHHh--CCCEEEEc---CCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeC
Q 010783 95 ETFQILFFLFQGEAEDNIPNFVREC--GASLLVTD---FSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPV 162 (501)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~L~~~~--~i~~V~~~---~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p 162 (501)
+++|+.+.+++.+.+..|...+.+- +++.|+.| ++.... ++++++. -++++.+++-+.++..
T Consensus 39 ~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv------AlrDAl~~v~~P~VEVHiSNi~aR 106 (143)
T 1gqo_A 39 EALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY------AIRDAVSSISLPVVEVHLSNLYAR 106 (143)
T ss_dssp HHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH------HHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccH------HHHHHHHhCCCCEEEEEecCcccc
Confidence 4569999999988876666655443 57788886 443332 4555553 5899999987666654
No 47
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=30.12 E-value=1.4e+02 Score=26.40 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=34.5
Q ss_pred HHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcc
Q 010783 91 RNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPL 131 (501)
Q Consensus 91 ~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~ 131 (501)
+.| ++.|+++.|..+++...+..++++.++..++....|-
T Consensus 62 ~~L-~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k~k 101 (195)
T 3n07_A 62 KAL-MNAGIEIAIITGRRSQIVENRMKALGISLIYQGQDDK 101 (195)
T ss_dssp HHH-HHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCSSH
T ss_pred HHH-HHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCCCc
Confidence 556 8889999999999999999999999999988765443
No 48
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.10 E-value=1.7e+02 Score=26.94 Aligned_cols=89 Identities=6% Similarity=0.022 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEecC---hhhHHHHHHHHhCCCEEEEcCCcchHHH
Q 010783 59 VPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE---AEDNIPNFVRECGASLLVTDFSPLREIR 135 (501)
Q Consensus 59 ~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~---~~~~l~~L~~~~~i~~V~~~~~p~~~~~ 135 (501)
...+.|.+-++. ....-.|+.+-+..+.+.+ ++.|..+++...+ ....+.+++...+++.|+..-.....
T Consensus 6 s~~Igvi~~~~~----~~~~~~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 78 (294)
T 3qk7_A 6 TDAIALAYPSRP----RVLNNSTFLEMISWIGIEL-GKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-- 78 (294)
T ss_dssp CCEEEEEEESCS----GGGSCHHHHHHHHHHHHHH-HHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--
T ss_pred cceEEEEecCCC----ccccChhHHHHHHHHHHHH-HHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence 356666553221 1122347777888889999 9999999887643 23445666777899999984321111
Q ss_pred HHHHHHHHHhCCCceEEEEecc
Q 010783 136 RCKDKICNRVSDSVTIHEVDAH 157 (501)
Q Consensus 136 ~rd~~v~~~l~~gi~~~~~~~~ 157 (501)
..+....+.||++..++..
T Consensus 79 ---~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 79 ---FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp ---HHHHHHHHTTCCEEEESCC
T ss_pred ---HHHHHHHhCCCCEEEECCC
Confidence 1222222468999988753
No 49
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=30.09 E-value=1.8e+02 Score=24.89 Aligned_cols=40 Identities=5% Similarity=0.082 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCc
Q 010783 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (501)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p 130 (501)
+-+.| ++.|+++.|..+++...+..+++..++. ++....|
T Consensus 47 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~~~ 86 (176)
T 3mmz_A 47 GIAAL-RKSGLTMLILSTEQNPVVAARARKLKIP-VLHGIDR 86 (176)
T ss_dssp HHHHH-HHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESCSC
T ss_pred HHHHH-HHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCCCC
Confidence 55677 8899999999999999999999999999 6655434
No 50
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=29.11 E-value=2.3e+02 Score=24.08 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhcCC-eEEEEecChhhHHHHHHHHhCCC---EEEEcC
Q 010783 83 LRGLRLLQRNIEETFQI-LFFLFQGEAEDNIPNFVRECGAS---LLVTDF 128 (501)
Q Consensus 83 ~esL~~L~~~L~~~~G~-~L~v~~G~~~~~l~~L~~~~~i~---~V~~~~ 128 (501)
+..|.++.+++ ++.|+ .++.+.-+..+.+.++++++++. .++.|.
T Consensus 52 ~p~l~~~~~~~-~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~ 100 (167)
T 2wfc_A 52 LPGYVEQAAAI-HGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADP 100 (167)
T ss_dssp HHHHHHTHHHH-HHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECT
T ss_pred HHHHHHHHHHH-HHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECC
Confidence 44678888899 88999 89888877778889999999886 455553
No 51
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=28.41 E-value=2.2e+02 Score=26.13 Aligned_cols=78 Identities=9% Similarity=-0.023 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEec-----ChhhHHHHHHHHhCCC
Q 010783 48 IHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQG-----EAEDNIPNFVRECGAS 122 (501)
Q Consensus 48 ~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G-----~~~~~l~~L~~~~~i~ 122 (501)
..+++.|..-|.+.+.++.-.+.........+..+.++|+.+.+.. ++.|+.|.+-.. ...+.+.+++++.+-.
T Consensus 87 ~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lE~~~~~~~~~~~~~~~l~~~~~~~ 165 (286)
T 3dx5_A 87 EQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELF-AQHNMYVLLETHPNTLTDTLPSTLELLGEVDHP 165 (286)
T ss_dssp HHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHH-HHTTCEEEEECCTTSTTSSHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHH-HHhCCEEEEecCCCcCcCCHHHHHHHHHhcCCC
Confidence 3344445555666654432211111122344566777777887777 777887777643 2345566777777655
Q ss_pred EEEE
Q 010783 123 LLVT 126 (501)
Q Consensus 123 ~V~~ 126 (501)
.|-.
T Consensus 166 ~vg~ 169 (286)
T 3dx5_A 166 NLKI 169 (286)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 4433
No 52
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=28.10 E-value=2.9e+02 Score=25.04 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecC--hh---hHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEEE
Q 010783 80 GFMLRGLRLLQRNIEETFQILFFLFQGE--AE---DNIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEV 154 (501)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~--~~---~~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~~ 154 (501)
.|..+-+..+++.+ +++|..+.+...+ +. +.+..+ ...+++.|+..-.... ..+..++...+.||++..+
T Consensus 18 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~---~~~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEI-ERLGGTAIALDAGRNDQTQVSQIQTL-IAQKPDAIIEQLGNLD---VLNPWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEECTTCHHHHHHHHHHH-HHHCCSEEEEESSCHH---HHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHH-HHcCCEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCCChh---hhHHHHHHHHHCCCcEEEe
Confidence 46667788888999 9999999888643 22 233333 3468999987431111 1123344433579999988
Q ss_pred ec
Q 010783 155 DA 156 (501)
Q Consensus 155 ~~ 156 (501)
+.
T Consensus 93 ~~ 94 (291)
T 3l49_A 93 DT 94 (291)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 53
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=28.00 E-value=1.9e+02 Score=25.20 Aligned_cols=42 Identities=7% Similarity=0.024 Sum_probs=35.6
Q ss_pred HHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcch
Q 010783 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (501)
Q Consensus 90 ~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~ 132 (501)
-+.| ++.|+++.++.+.+...+..+++..++..++....|..
T Consensus 55 l~~L-~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk~ 96 (191)
T 3n1u_A 55 LKLL-MAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKR 96 (191)
T ss_dssp HHHH-HHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSCH
T ss_pred HHHH-HHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCChH
Confidence 4567 88899999999999999999999999999887665544
No 54
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=26.82 E-value=1.3e+02 Score=25.50 Aligned_cols=68 Identities=10% Similarity=-0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCCeEE---EEecChhhHHHHHHHHhC--CCEEEEcCCcchHH----HHHHHHHHHHhCCCceEEEE
Q 010783 84 RGLRLLQRNIEETFQILFF---LFQGEAEDNIPNFVRECG--ASLLVTDFSPLREI----RRCKDKICNRVSDSVTIHEV 154 (501)
Q Consensus 84 esL~~L~~~L~~~~G~~L~---v~~G~~~~~l~~L~~~~~--i~~V~~~~~p~~~~----~~rd~~v~~~l~~gi~~~~~ 154 (501)
+.|..--..| ++.|+... +..++|...|.+.+.+++ +++|+..-.|...+ +++-.+.+. + |+++..+
T Consensus 58 ~~l~~sl~aL-~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~-~--gvPVlhl 133 (138)
T 2iel_A 58 EEAAAAKRAL-EAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAER-F--GLPVIHV 133 (138)
T ss_dssp HHHHHHHHHH-HTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGG-G--SSCEEEE
T ss_pred HHHHHHHHHH-HHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHh-c--CCCEEEE
Confidence 4455555556 77787765 778899999999999999 99998853343222 223344444 4 8888654
Q ss_pred e
Q 010783 155 D 155 (501)
Q Consensus 155 ~ 155 (501)
-
T Consensus 134 ~ 134 (138)
T 2iel_A 134 I 134 (138)
T ss_dssp E
T ss_pred e
Confidence 3
No 55
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=26.72 E-value=1.7e+02 Score=26.14 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCc
Q 010783 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSP 130 (501)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p 130 (501)
+-+.| ++.|+++.|..+++...+..++++.++..++....+
T Consensus 84 ~L~~L-~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k~ 124 (211)
T 3ij5_A 84 GIRCL-ITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQSD 124 (211)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSS
T ss_pred HHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcccCC
Confidence 55777 889999999999999999999999999998876643
No 56
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=26.62 E-value=1.7e+02 Score=24.26 Aligned_cols=43 Identities=9% Similarity=-0.067 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcch
Q 010783 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (501)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~ 132 (501)
+-+.| ++.|+++.+..+.+...+..+++++++..++....|..
T Consensus 39 ~l~~l-~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~kpk~ 81 (164)
T 3e8m_A 39 GIFWA-HNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDKL 81 (164)
T ss_dssp HHHHH-HHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSCSCHH
T ss_pred HHHHH-HHCCCEEEEEeCCChHHHHHHHHHcCCCEeecccCChH
Confidence 34666 88899999999999999999999999998887665544
No 57
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=25.74 E-value=3e+02 Score=23.59 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=43.5
Q ss_pred hhcCCeEEEEecChhhHHHHHHHHh--C-CCEEEEc---CCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeC
Q 010783 95 ETFQILFFLFQGEAEDNIPNFVREC--G-ASLLVTD---FSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPV 162 (501)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~L~~~~--~-i~~V~~~---~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p 162 (501)
+++|+.+.+++.+.+..|...+.+. + ++.|+.| ++.... ++++++. -++++.+++-+.++..
T Consensus 38 ~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv------AlrDAl~~v~~P~VEVHiSNi~aR 106 (149)
T 2uyg_A 38 AELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY------ALLDAIRAQPLPVVEVHLTNLHAR 106 (149)
T ss_dssp HHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH------HHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccH------HHHHHHHhCCCCEEEEEecCcccc
Confidence 5669999999998887776665543 2 6788886 444442 5556663 5899999987666654
No 58
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=25.56 E-value=78 Score=27.66 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcC
Q 010783 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDF 128 (501)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~ 128 (501)
+-+.| ++.|+++.+..|.+.+.+..++++.++..++...
T Consensus 54 ~l~~L-~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~ 92 (189)
T 3mn1_A 54 GIKML-IASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR 92 (189)
T ss_dssp HHHHH-HHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSC
T ss_pred HHHHH-HHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCc
Confidence 55677 8899999999999999999999999999888765
No 59
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=25.34 E-value=17 Score=29.79 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=16.1
Q ss_pred hcCCccc-hHHhhhhhhcCCC
Q 010783 465 RKFDVDG-YIAYVKRIVGGTK 484 (501)
Q Consensus 465 ~k~Dp~g-yIr~wvPeL~~~~ 484 (501)
+||||+| |.++|.-+++.++
T Consensus 88 ~KyDP~g~y~~ky~~~~~~~~ 108 (109)
T 2gvs_A 88 AKYDPDGTYSKKYEDREKELH 108 (109)
T ss_dssp HHHCTTCTTTHHHHTTTCCSC
T ss_pred HHHCCCchHHHHHHHHHHHcc
Confidence 7888888 8888888877654
No 60
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=25.19 E-value=81 Score=34.57 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=36.9
Q ss_pred HHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcch
Q 010783 90 QRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (501)
Q Consensus 90 ~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~ 132 (501)
-++| ++.|+.+.+..|+.......++++.+++.++....|..
T Consensus 563 I~~L-~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~P~~ 604 (736)
T 3rfu_A 563 ILEL-QQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPED 604 (736)
T ss_dssp HHHH-HHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSCCHHH
T ss_pred HHHH-HHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEecCHHH
Confidence 3455 77899999999999999999999999999999887755
No 61
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=25.08 E-value=2.2e+02 Score=27.33 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhc-------CCeEEEEecChhhHHHHHHHHhCCCEEEEc-----CCcchHHHHHHHHHHHHhC-CC
Q 010783 82 MLRGLRLLQRNIEETF-------QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS-DS 148 (501)
Q Consensus 82 l~esL~~L~~~L~~~~-------G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~-----~~p~~~~~~rd~~v~~~l~-~g 148 (501)
+.+-|..|++++ ++. +..+++.+ +.+.-|++.+|.+.+... .+|.. ....++.+.++ ++
T Consensus 175 ~~~~L~~Ld~~~-~~~l~~~~~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~ 246 (313)
T 1toa_A 175 YQQQLDKLDAYV-RRKAQSLPAERRVLVTAH----DAFGYFSRAYGFEVKGLQGVSTASEASA---HDMQELAAFIAQRK 246 (313)
T ss_dssp HHHHHHHHHHHH-HHHHHTSCGGGCEEEEEE----SCCHHHHHHHTCEEEEEECSSCSSCCCH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHhhCCccCCEEEEEC----CcHHHHHHHCCCeEEEeeccCCCCCCCH---HHHHHHHHHHHHcC
Confidence 445566666655 322 34566655 478889999999987652 34554 34566777674 78
Q ss_pred ceEEEEec
Q 010783 149 VTIHEVDA 156 (501)
Q Consensus 149 i~~~~~~~ 156 (501)
|++..++.
T Consensus 247 v~~If~e~ 254 (313)
T 1toa_A 247 LPAIFIES 254 (313)
T ss_dssp CSEEEEET
T ss_pred CCEEEEeC
Confidence 98877653
No 62
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=24.59 E-value=2.3e+02 Score=26.80 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhhc-----CCeEEEEecChhhHHHHHHHHhCCCEEEE-c----CCcchHHHHHHHHHHHHhC-C
Q 010783 79 LGFMLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-D----FSPLREIRRCKDKICNRVS-D 147 (501)
Q Consensus 79 ~~Fl~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~L~~~~~i~~V~~-~----~~p~~~~~~rd~~v~~~l~-~ 147 (501)
..=+.+.|..|++++ ++. +-.+++.+ +.+.-|++.+|++.+.. . .+|.. ....++.+.++ +
T Consensus 156 ~~~~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~ 227 (286)
T 3gi1_A 156 AKAFKKEAEQLTEEY-TQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEPSP---RQLKEIQDFVKEY 227 (286)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---CCH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCCCH---HHHHHHHHHHHHc
Confidence 333555666776666 432 44565555 47889999999998765 2 24554 34566777774 7
Q ss_pred CceEEEEec
Q 010783 148 SVTIHEVDA 156 (501)
Q Consensus 148 gi~~~~~~~ 156 (501)
+|++..++.
T Consensus 228 ~v~~if~e~ 236 (286)
T 3gi1_A 228 NVKTIFAED 236 (286)
T ss_dssp TCCEEEECT
T ss_pred CCCEEEEeC
Confidence 898887653
No 63
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=24.48 E-value=4.6e+02 Score=24.92 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=38.1
Q ss_pred cCCeEEEE--ecChhhHHHHHHHHhCCCEEEEcC--CcchHHHHHHHHHHHHh-CCCceEEE
Q 010783 97 FQILFFLF--QGEAEDNIPNFVRECGASLLVTDF--SPLREIRRCKDKICNRV-SDSVTIHE 153 (501)
Q Consensus 97 ~G~~L~v~--~G~~~~~l~~L~~~~~i~~V~~~~--~p~~~~~~rd~~v~~~l-~~gi~~~~ 153 (501)
.++|+.+. +|...+.+.+-+ +.|.+.|-+|- .|.++-....+++.+.+ ..||.|+-
T Consensus 79 ~~VPValHlDHg~~~e~i~~ai-~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEa 139 (288)
T 3q94_A 79 ITVPVAIHLDHGSSFEKCKEAI-DAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEA 139 (288)
T ss_dssp CCSCEEEEEEEECSHHHHHHHH-HHTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHH-HcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 56776554 565555554443 46999999974 46665566788888888 57887764
No 64
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=23.56 E-value=2.3e+02 Score=26.62 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhc-----CCeEEEEecChhhHHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHhC-CCce
Q 010783 82 MLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRVS-DSVT 150 (501)
Q Consensus 82 l~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~L~~~~~i~~V~~-----~~~p~~~~~~rd~~v~~~l~-~gi~ 150 (501)
+.+-|..|.+++ ++. +..+++.+ +.+.-|++.+|...+.. ..+|.. ....++.+.++ ++|+
T Consensus 154 ~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~v~ 225 (284)
T 2prs_A 154 FEAQLASTETQV-GNELAPLKGKGYFVFH----DAYGYFEKQFGLTPLGHFTVNPEIQPGA---QRLHEIRTQLVEQKAT 225 (284)
T ss_dssp HHHHHHHHHHHH-HHHHGGGTTCCEEEEE----SCCHHHHHHHTCCCCEEEESSTTSCCCH---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH-HHHHhcCCCCeEEEEC----ccHHHHHHHCCCeEeEeeccCCCCCCCH---HHHHHHHHHHHHcCCC
Confidence 445555665555 322 44566655 47889999999997755 235655 34566777774 7898
Q ss_pred EEEEec
Q 010783 151 IHEVDA 156 (501)
Q Consensus 151 ~~~~~~ 156 (501)
+..++.
T Consensus 226 ~if~e~ 231 (284)
T 2prs_A 226 CVFAEP 231 (284)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 887653
No 65
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=23.48 E-value=2.8e+02 Score=24.34 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=42.2
Q ss_pred hhcCCeEEEEecChhhHHHHHHHH--hCCCEEEEc---CCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeC
Q 010783 95 ETFQILFFLFQGEAEDNIPNFVRE--CGASLLVTD---FSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPV 162 (501)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~L~~~--~~i~~V~~~---~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p 162 (501)
+++|+.+.+++.+.+..|...+.+ -+++.|+.| ++.... ++++++. -++++.+++-..++..
T Consensus 67 ~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv------AlrDAL~~v~~P~VEVHiSNihaR 134 (172)
T 3n8k_A 67 AELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV------ALRDACAELSAPLIEVHISNVHAR 134 (172)
T ss_dssp HHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH------HHHHHHTTCCSCEEEEESSCTTSS
T ss_pred HHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH------HHHHHHHhCCCCEEEEEcCCchhc
Confidence 457999999998877666555443 257888886 333332 5666664 5899999987666544
No 66
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=23.22 E-value=2e+02 Score=26.30 Aligned_cols=70 Identities=10% Similarity=0.026 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecC----hhhHHHHHHHHhCCCEEEEcC-CcchHHHHHHHHHHHHhCCCceEEEE
Q 010783 80 GFMLRGLRLLQRNIEETFQILFFLFQGE----AEDNIPNFVRECGASLLVTDF-SPLREIRRCKDKICNRVSDSVTIHEV 154 (501)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~----~~~~l~~L~~~~~i~~V~~~~-~p~~~~~~rd~~v~~~l~~gi~~~~~ 154 (501)
.|..+-+..+++.+ ++.|..+++...+ ....+.+++...+++.|++.- .... ..+....+.||++..+
T Consensus 23 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 23 GFTSQMVFGITEVL-STTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTH 95 (288)
T ss_dssp CHHHHHHHHHHHHH-TTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHH-HHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEE
Confidence 46777888889999 9999999887532 234455666778999998842 2211 1222222469999988
Q ss_pred ec
Q 010783 155 DA 156 (501)
Q Consensus 155 ~~ 156 (501)
+.
T Consensus 96 ~~ 97 (288)
T 3gv0_A 96 GR 97 (288)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 67
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=23.13 E-value=3.6e+02 Score=25.81 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhhc-------CCeEEEEecChhhHHHHHHHHhCCCEEEE-----cCCcchHHHHHHHHHHHHh-C
Q 010783 80 GFMLRGLRLLQRNIEETF-------QILFFLFQGEAEDNIPNFVRECGASLLVT-----DFSPLREIRRCKDKICNRV-S 146 (501)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~-------G~~L~v~~G~~~~~l~~L~~~~~i~~V~~-----~~~p~~~~~~rd~~v~~~l-~ 146 (501)
.=+.+.|..|++++ ++. +-.+++.+ +.+.-|++.+|.+.+.. +.+|.. ....++.+.+ +
T Consensus 166 ~~~~~~L~~Ld~~~-~~~l~~~p~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~i~~~~ePs~---~~l~~l~~~ik~ 237 (307)
T 3ujp_A 166 AVYSEQLKAIDRQL-GADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTP---KQVQTVIEEVKT 237 (307)
T ss_dssp HHHHHHHHHHHHHH-HHHHSSSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSCCSSCCCH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHhhccccCCEEEEEC----chHHHHHHHCCCcEEEeeccCCCCCCCH---HHHHHHHHHHHh
Confidence 33555677777766 432 23344444 47899999999998855 234554 3456777777 4
Q ss_pred CCceEEEEec
Q 010783 147 DSVTIHEVDA 156 (501)
Q Consensus 147 ~gi~~~~~~~ 156 (501)
++|++..++.
T Consensus 238 ~~v~~If~e~ 247 (307)
T 3ujp_A 238 NNVPTIFCES 247 (307)
T ss_dssp TTCSEEEEET
T ss_pred cCCcEEEEeC
Confidence 8998887753
No 68
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=22.83 E-value=3.1e+02 Score=25.23 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCCCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEecC-----hhhHHHHHHHHhCC
Q 010783 47 LIHAVDQANKNNVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE-----AEDNIPNFVRECGA 121 (501)
Q Consensus 47 L~~A~~~a~~~~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~-----~~~~l~~L~~~~~i 121 (501)
+..+++.|.+-|.+.+.+...++..-......+..+.++|+.+.+.. ++.|+.|.+-... ..+.+.+++++.+-
T Consensus 110 ~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a-~~~Gv~l~lEn~~~~~~~~~~~~~~l~~~v~~ 188 (295)
T 3cqj_A 110 MRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMA-SRAQVTLAMEIMDYPLMNSISKALGYAHYLNN 188 (295)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHH-HHHTCEEEEECCSSGGGCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHH-HHhCCEEEEeeCCCcccCCHHHHHHHHHhcCC
Confidence 45566666666777764432222111123455777889999999999 8999999887532 34667788888876
Q ss_pred CEEEE
Q 010783 122 SLLVT 126 (501)
Q Consensus 122 ~~V~~ 126 (501)
..|-+
T Consensus 189 ~~vg~ 193 (295)
T 3cqj_A 189 PWFQL 193 (295)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 65655
No 69
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=22.68 E-value=1.3e+02 Score=28.47 Aligned_cols=58 Identities=7% Similarity=-0.010 Sum_probs=48.3
Q ss_pred EEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEecChhh--HHHHHHHHhCCC
Q 010783 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVRECGAS 122 (501)
Q Consensus 64 vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~L~~~~~i~ 122 (501)
+|+.|......|.+.+..+.+=+.+.-+.| .+.|..++|...++.. .+..|.+.+++-
T Consensus 53 iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L-~~~g~d~IVIACNTa~~~al~~lr~~~~iP 112 (274)
T 3uhf_A 53 IYYGDTARVPYGVKDKDTIIKFCLEALDFF-EQFQIDMLIIACNTASAYALDALRAKAHFP 112 (274)
T ss_dssp EEEECTTTCCCTTSCHHHHHHHHHHHHHHH-TTSCCSEEEECCHHHHHHSHHHHHHHCSSC
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChhHHHHHHHHHhcCCC
Confidence 788898777888888888888888888999 9999999999988765 367787777664
No 70
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=22.67 E-value=3.2e+02 Score=23.29 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=42.1
Q ss_pred hhcCCeEEEEecChhhHHHHHHHHh--CCCEEEEc---CCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeC
Q 010783 95 ETFQILFFLFQGEAEDNIPNFVREC--GASLLVTD---FSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPV 162 (501)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~L~~~~--~i~~V~~~---~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p 162 (501)
+++|+.+.+++.+.+..|...+.+- +++.|+.| ++... -++++++. -++++.+++-..++..
T Consensus 41 ~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtS------vAlrDAl~~v~~P~VEVHiSNi~aR 108 (146)
T 1h05_A 41 AELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTS------VALRDACAELSAPLIEVHISNVHAR 108 (146)
T ss_dssp HHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTC------HHHHHHHHTCCSCEEEEESSCGGGS
T ss_pred HHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhcccc------HHHHHHHHhCCCCEEEEEecCcccc
Confidence 5679999999988776655544332 47788886 44333 25556663 5899999987666654
No 71
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.67 E-value=3.7e+02 Score=24.14 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecCh--hh--HHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEEEe
Q 010783 80 GFMLRGLRLLQRNIEETFQILFFLFQGEA--ED--NIPNFVRECGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVD 155 (501)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~~--~~--~l~~L~~~~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~~~ 155 (501)
.|..+-+..+.+.+ ++.|..+.+...+. .. .+.+.+...+++.|++.-.... ..+....+.||++..++
T Consensus 20 ~~~~~~~~gi~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~------~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 20 YFSTELFKGISSIL-ESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNP------QTVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHH-HTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCH------HHHHHHHTTSSCEEEES
T ss_pred hHHHHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCcH------HHHHHHHHCCCCEEEEe
Confidence 46667778888999 99999998876432 11 2223344568999988432111 23333335799999886
Q ss_pred c
Q 010783 156 A 156 (501)
Q Consensus 156 ~ 156 (501)
.
T Consensus 93 ~ 93 (276)
T 3jy6_A 93 R 93 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 72
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.52 E-value=3e+02 Score=22.17 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=28.9
Q ss_pred EEecChhhHHHHHHHH---hCCCEEEEcCCcchHHHHHHHHHHHHhCCCceEEEEec
Q 010783 103 LFQGEAEDNIPNFVRE---CGASLLVTDFSPLREIRRCKDKICNRVSDSVTIHEVDA 156 (501)
Q Consensus 103 v~~G~~~~~l~~L~~~---~~i~~V~~~~~p~~~~~~rd~~v~~~l~~gi~~~~~~~ 156 (501)
++..+| ++|.+++++ .|+..|..-.+-. +.+|-+++.++-+.|+.++++.+
T Consensus 7 vfssdp-eilkeivreikrqgvrvvllysdqd--ekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 7 VFSSDP-EILKEIVREIKRQGVRVVLLYSDQD--EKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEESCH-HHHHHHHHHHHHTTCEEEEEECCSC--HHHHHHHHHHHHTTTCEEEECCS
T ss_pred EecCCH-HHHHHHHHHHHhCCeEEEEEecCch--HHHHHHHHHHHHHcCCceeeecc
Confidence 333444 677776654 3555443321112 23455677776678998888764
No 73
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=22.39 E-value=1.9e+02 Score=27.17 Aligned_cols=60 Identities=0% Similarity=-0.157 Sum_probs=49.0
Q ss_pred EEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEecChhh--HHHHHHHHh-CCCEE
Q 010783 64 AFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAED--NIPNFVREC-GASLL 124 (501)
Q Consensus 64 vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~--~l~~L~~~~-~i~~V 124 (501)
+|+-|......|.+.+..+.+-+.+.-+.| .+.|..+++...++.. .+..|.+.+ ++--|
T Consensus 36 iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L-~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvi 98 (268)
T 3out_A 36 IYFGDIARIPYGTKSRATIQKFAAQTAKFL-IDQEVKAIIIACNTISAIAKDIVQEIAKAIPVI 98 (268)
T ss_dssp EEEECTTTCCCTTSCHHHHHHHHHHHHHHH-HHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEE
T ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEE
Confidence 788888777888888999999999999999 8899999999887765 467787777 66533
No 74
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.95 E-value=3.1e+02 Score=25.77 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhc-----CCeEEEEecChhhHHHHHHHHhCCCEEEEc-----CCcchHHHHHHHHHHHHhC-CCce
Q 010783 82 MLRGLRLLQRNIEETF-----QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRVS-DSVT 150 (501)
Q Consensus 82 l~esL~~L~~~L~~~~-----G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~-----~~p~~~~~~rd~~v~~~l~-~gi~ 150 (501)
+.+-|..|++++ ++. +..+++.+ +.+.-|++.+|.+.+... .+|.. ....++.+.++ ++|+
T Consensus 157 ~~~~L~~Ld~~~-~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~v~ 228 (284)
T 3cx3_A 157 FIKKAQELTKKF-QPKFEKATQKTFVTQH----TAFSYLAKRFGLNQLGIAGISPEQEPSP---RQLTEIQEFVKTYKVK 228 (284)
T ss_dssp HHHHHHHHHHHH-HHHHHSCSCCCEEEEE----SCCHHHHHHTTCCEEEEECSSTTCCCCS---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH-HHHHhcCCCCEEEEEC----CchHHHHHHcCCEEeeccCCCCCCCCCH---HHHHHHHHHHHHcCCC
Confidence 445566666655 332 44566655 478899999999988662 35655 33556777674 7888
Q ss_pred EEEEec
Q 010783 151 IHEVDA 156 (501)
Q Consensus 151 ~~~~~~ 156 (501)
+..++.
T Consensus 229 ~if~e~ 234 (284)
T 3cx3_A 229 TIFTES 234 (284)
T ss_dssp CEEECS
T ss_pred EEEEeC
Confidence 777653
No 75
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=21.66 E-value=2.7e+02 Score=23.95 Aligned_cols=62 Identities=11% Similarity=0.236 Sum_probs=40.9
Q ss_pred hhcCCeEEEEecChhhHHHHHHHHh--CCCEEEEc---CCcchHHHHHHHHHHHHhC-CCceEEEEecceEEeC
Q 010783 95 ETFQILFFLFQGEAEDNIPNFVREC--GASLLVTD---FSPLREIRRCKDKICNRVS-DSVTIHEVDAHNVVPV 162 (501)
Q Consensus 95 ~~~G~~L~v~~G~~~~~l~~L~~~~--~i~~V~~~---~~p~~~~~~rd~~v~~~l~-~gi~~~~~~~~~l~~p 162 (501)
.++|+.+.+++.+.+..|...+.+- +++.|+.| ++.... ++.+++. -++++.+++-..++..
T Consensus 46 ~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv------AlrDAl~~~~~P~VEVHiSNi~aR 113 (153)
T 3lwz_A 46 QGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSV------ALRDALLGVQIPFIEIHLSNVHAR 113 (153)
T ss_dssp HHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH------HHHHHHHHHTCCEEEEESSCGGGS
T ss_pred HHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechH------HHHHHHHhcCCCEEEEEcCCcccc
Confidence 4579999999988877766655543 57788886 443332 2333332 3789999987666544
No 76
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=21.28 E-value=3.7e+02 Score=22.88 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCEEEEEEecCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEecC--------hhhHHHHHH-HHhCCC
Q 010783 58 NVPVAVAFNLFDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGE--------AEDNIPNFV-RECGAS 122 (501)
Q Consensus 58 ~~~vl~vfi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~--------~~~~l~~L~-~~~~i~ 122 (501)
|.+++ |+++.. .++..+. .+..|..|.+++ ++.|+.++.+.-+ ..+.+.+++ ++++++
T Consensus 48 Gk~vl-l~F~at---wC~~C~~--~~~~l~~l~~~~-~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2vup_A 48 GSPLL-IYNVAS---KCGYTKG--GYETATTLYNKY-KSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE 114 (190)
T ss_dssp TSCEE-EEEECS---SSTTHHH--HHHHHHHHHHHH-GGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred CCEEE-EEEecC---CCCccHH--HHHHHHHHHHHH-hcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCC
Confidence 55666 444433 3443332 356889999999 8889998887643 456788888 788776
No 77
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=21.14 E-value=3.8e+02 Score=25.77 Aligned_cols=67 Identities=10% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhh-c------CCeEEEEecChhhHHHHHHHHhCCCEEEEc-----CCcchHHHHHHHHHHHHh-CCC
Q 010783 82 MLRGLRLLQRNIEET-F------QILFFLFQGEAEDNIPNFVRECGASLLVTD-----FSPLREIRRCKDKICNRV-SDS 148 (501)
Q Consensus 82 l~esL~~L~~~L~~~-~------G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~-----~~p~~~~~~rd~~v~~~l-~~g 148 (501)
+.+-|..|++++ ++ + +-.+++.+ +.+.-|++.+|.+.+... .+|.. ....++.+.+ +++
T Consensus 182 ~~~~L~~Ld~~~-~~~l~~~~~~~r~~v~~H----~af~Yfa~~yGL~~~~~~~~~~~~eps~---~~l~~l~~~ik~~~ 253 (321)
T 1xvl_A 182 YSEQLKAIDRQL-GADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTP---KQVQTVIEEVKTNN 253 (321)
T ss_dssp HHHHHHHHHHHH-HHHHTTSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSSSSCSCCH---HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-HHHHhhCcccCCEEEEEC----chHHHHHHHCCCeEEEeeccCCCCCCCH---HHHHHHHHHHHHcC
Confidence 445666666665 32 2 33566655 478899999999987652 34554 3356777777 478
Q ss_pred ceEEEEec
Q 010783 149 VTIHEVDA 156 (501)
Q Consensus 149 i~~~~~~~ 156 (501)
|++..++.
T Consensus 254 v~~If~e~ 261 (321)
T 1xvl_A 254 VPTIFCES 261 (321)
T ss_dssp CSEEEEET
T ss_pred CcEEEEeC
Confidence 98877654
No 78
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=21.10 E-value=5.6e+02 Score=24.62 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=40.1
Q ss_pred hhcCCeEEEE--ecChhhHHHHHHHHh-------CCCEEEEcC--CcchHHHHHHHHHHHHh-CCCceEEE
Q 010783 95 ETFQILFFLF--QGEAEDNIPNFVREC-------GASLLVTDF--SPLREIRRCKDKICNRV-SDSVTIHE 153 (501)
Q Consensus 95 ~~~G~~L~v~--~G~~~~~l~~L~~~~-------~i~~V~~~~--~p~~~~~~rd~~v~~~l-~~gi~~~~ 153 (501)
++.++|+.+. +|...+.+.+.++.+ +.+.|-+|- .|.++-....+++.+.+ ..||.|+-
T Consensus 79 ~~~~VPVaLHlDHg~~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEa 149 (306)
T 3pm6_A 79 RAASVPITLHLDHAQDPEIIKRAADLSRSETHEPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEA 149 (306)
T ss_dssp HHCSSCEEEEEEEECCHHHHHHHHHTC------CCCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHCCCCEEEEcCCCCCHHHHHHHHHhhhhccCCCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4467887654 465556665555532 999999974 46655566778888888 57887764
No 79
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.09 E-value=3.5e+02 Score=24.44 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecC--hh---hHHHHHHHHhCCCEEEEcC-CcchHHHHHHHHHHHHhCCCceEEE
Q 010783 80 GFMLRGLRLLQRNIEETFQILFFLFQGE--AE---DNIPNFVRECGASLLVTDF-SPLREIRRCKDKICNRVSDSVTIHE 153 (501)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~--~~---~~l~~L~~~~~i~~V~~~~-~p~~~~~~rd~~v~~~l~~gi~~~~ 153 (501)
.|..+-+..+++.+ +++|..+.+...+ +. +.+..+ .+.+++.|+..- .+... ...++...+.||++..
T Consensus 21 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~~~----~~~~~~~~~~~iPvV~ 94 (293)
T 3l6u_A 21 EFAQRLINAFKAEA-KANKYEALVATSQNSRISEREQILEF-VHLKVDAIFITTLDDVYI----GSAIEEAKKAGIPVFA 94 (293)
T ss_dssp HHHHHHHHHHHHHH-HHTTCEEEEEECSSCHHHHHHHHHHH-HHTTCSEEEEECSCTTTT----HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHH-HHcCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCChHHH----HHHHHHHHHcCCCEEE
Confidence 46667778888899 9999999988643 22 233333 356899998842 22211 1223333346999998
Q ss_pred Eec
Q 010783 154 VDA 156 (501)
Q Consensus 154 ~~~ 156 (501)
++.
T Consensus 95 ~~~ 97 (293)
T 3l6u_A 95 IDR 97 (293)
T ss_dssp ESS
T ss_pred ecC
Confidence 864
No 80
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=20.95 E-value=2.9e+02 Score=23.62 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcch
Q 010783 89 LQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (501)
Q Consensus 89 L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~ 132 (501)
+-+.| ++.|+.+.++.|.+...+..+++..++..++....|..
T Consensus 61 ~l~~L-~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk~ 103 (188)
T 2r8e_A 61 GIRCA-LTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKL 103 (188)
T ss_dssp HHHHH-HTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCSH
T ss_pred HHHHH-HHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCCH
Confidence 44567 88899999999999999999999999998776554544
No 81
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=20.90 E-value=3.8e+02 Score=24.40 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecC-hh---hHHHHHHHHhCCCEEEEcC-CcchHHHHHHHHHHHHhCCCceEEEE
Q 010783 80 GFMLRGLRLLQRNIEETFQILFFLFQGE-AE---DNIPNFVRECGASLLVTDF-SPLREIRRCKDKICNRVSDSVTIHEV 154 (501)
Q Consensus 80 ~Fl~esL~~L~~~L~~~~G~~L~v~~G~-~~---~~l~~L~~~~~i~~V~~~~-~p~~~~~~rd~~v~~~l~~gi~~~~~ 154 (501)
.|..+-+..+.+.+ +++|..+++.... +. +.+..+. +.+++.|+..- ++... ...+....+.||++..+
T Consensus 15 ~~~~~~~~gi~~~a-~~~g~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~~----~~~~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 15 PWFQTEWKFADKAG-KDLGFEVIKIAVPDGEKTLNAIDSLA-ASGAKGFVICTPDPKLG----SAIVAKARGYDMKVIAV 88 (306)
T ss_dssp HHHHHHHHHHHHHH-HHHTEEEEEEECCSHHHHHHHHHHHH-HTTCCEEEEECSCGGGH----HHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHH-HHcCCEEEEeCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCchhh----HHHHHHHHHCCCcEEEe
Confidence 46677788888899 9999999887653 22 2233443 45899998843 22221 12233333469999998
Q ss_pred ec
Q 010783 155 DA 156 (501)
Q Consensus 155 ~~ 156 (501)
+.
T Consensus 89 ~~ 90 (306)
T 8abp_A 89 DD 90 (306)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 82
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=20.42 E-value=2.8e+02 Score=22.90 Aligned_cols=59 Identities=5% Similarity=0.065 Sum_probs=42.8
Q ss_pred CCC-EEEEEEe-cCCccccchhHHHHHHHHHHHHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCE
Q 010783 58 NVP-VAVAFNL-FDQFLGAKARQLGFMLRGLRLLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASL 123 (501)
Q Consensus 58 ~~~-vl~vfi~-dp~~~~~~~~r~~Fl~esL~~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~ 123 (501)
|.+ ++ |+++ .. .+...+. .+..|.++.+++ ++.|+.++.+.-+..+.+.++++++++.-
T Consensus 28 gk~~vv-l~F~~a~---~C~~C~~--~~~~l~~~~~~~-~~~~v~vv~vs~d~~~~~~~~~~~~~~~~ 88 (161)
T 3drn_A 28 GKHNIV-LYFYPKD---DTPGSTR--EASAFRDNWDLL-KDYDVVVIGVSSDDINSHKRFKEKYKLPF 88 (161)
T ss_dssp TTSEEE-EEECSCT---TCHHHHH--HHHHHHHTHHHH-HTTCEEEEEEESCCHHHHHHHHHHTTCCS
T ss_pred CCCCEE-EEEEcCC---CCCchHH--HHHHHHHHHHHH-HHcCCEEEEEeCCCHHHHHHHHHHhCCCc
Confidence 455 55 5554 32 3433332 456789999999 88899988888888889999999998873
No 83
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=20.32 E-value=76 Score=34.11 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCCeEEEEecChhhHHHHHHHHhCCCEEEEcCCcch
Q 010783 88 LLQRNIEETFQILFFLFQGEAEDNIPNFVRECGASLLVTDFSPLR 132 (501)
Q Consensus 88 ~L~~~L~~~~G~~L~v~~G~~~~~l~~L~~~~~i~~V~~~~~p~~ 132 (501)
+.-++| ++.|+.+.+..|++......++++.+++.++.+..|..
T Consensus 464 ~~i~~L-~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~P~~ 507 (645)
T 3j08_A 464 PAVQEL-KRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQ 507 (645)
T ss_dssp HHHHHH-HHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCTTC
T ss_pred HHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeCCHHh
Confidence 334556 88899999999999999999999999999999888875
Done!