BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010784
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 26/153 (16%)
Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFK 203
+ LS H++ +T + P+ +V+V++S D +I++W G +R K
Sbjct: 101 KYALSGHRSPVTRVIFHPVF-------------SVMVSASEDATIKVWDYETGDFERTLK 147
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263
GH V +S D SGK+LAS D T++LW +G + ++ T++GH+ +
Sbjct: 148 GHTDSVQDIS----FDHSGKLLASCSADMTIKLWDF-----QGFECIR-TMHGHDHNVSS 197
Query: 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
+S+ + +V+ S+D +++W+ T V++
Sbjct: 198 VSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKT 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 30/193 (15%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS--CQRCFKGHN--------G 207
C++ F H + P + ++ + S D ++R+W + C+ + H
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 208 PVSTLSDKLLGDGS--------GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259
P S+ S GS G L SG D T+++W +S+ TL GH+
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG------MCLMTLVGHDN 339
Query: 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319
++ + F+L + + D +RVWD C + + + H++
Sbjct: 340 WVRGVLFHSGGKFIL-SCADDKTLRVWDYKN-----KRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 320 YIASGSSVVTIDL 332
Y+ +GS T+ +
Sbjct: 394 YVVTGSVDQTVKV 406
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 381 KPQPMAELDGHVGSVTQLHMDP-YKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI 439
+P L GH VT++ P + ++ +D I +W+ +TG +L + DI
Sbjct: 97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 440 STGCSAMAVSGC 451
S S ++ C
Sbjct: 157 SFDHSGKLLASC 168
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 39/279 (13%)
Query: 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVS 210
K + C R+ H S+ Q E V++T S D ++R+W G H V
Sbjct: 160 KNTLECKRILTGHTGSVL--CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217
Query: 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270
L +G ++ + +D ++ +W ++S L+ L GH + +V
Sbjct: 218 HLR---FNNG---MMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAV---NVVDFD 265
Query: 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVVT 329
+V+ S D ++VW+TST VR ++ G + C + + SGSS T
Sbjct: 266 DKYIVSASGDRTIKVWNTSTCEFVR--------TLNGHKRGIACLQYRDRLVVSGSSDNT 317
Query: 330 IDLRTMQKVMTPAICKPILHSFSIM------PSKSLICTGGIGKAMTWDIRRSQDAVKPQ 383
I L ++ C +L + +K ++ GK WD+ + D P
Sbjct: 318 IRLWDIE----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 373
Query: 384 P---MAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWE 419
+ L H G V +L D ++IV+ DD I IW+
Sbjct: 374 GTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT-ILIWD 411
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 388 LDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430
L GH GSV L D I+TG D + +W+ +TG + N+L+
Sbjct: 169 LTGHTGSVLCLQYDERVIITGSSDST-VRVWDVNTGEMLNTLI 210
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVR 284
+ SG D T+++W + K L GH + + + +++T S DS VR
Sbjct: 146 IVSGLRDNTIKIWD------KNTLECKRILTGHTGSVLCLQ---YDERVIITGSSDSTVR 196
Query: 285 VWDTSTSSAVRS 296
VWD +T + +
Sbjct: 197 VWDVNTGEMLNT 208
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 36/279 (12%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C+R H ++ S Q +N++++ S D ++++W G C GH V +
Sbjct: 151 CLRTLVGHTGGVWSS--QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 208
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
K + SG DAT+R+W + + Q L L GH ++ + G + +V
Sbjct: 209 ------EKRVVSGSRDATLRVWDIETG-----QCLHV-LMGHVAAVRCVQYDGRR---VV 253
Query: 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTS-VPGVPVDMKCHESMLYIASGS---SVVTID 331
+ + D V+VWD T + + + G T+ V + D +++ SGS S+ D
Sbjct: 254 SGAYDFMVKVWDPETETCLHT--LQGHTNRVYSLQFD------GIHVVSGSLDTSIRVWD 305
Query: 332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH 391
+ T + T + + + L+ WDI+ Q Q + + H
Sbjct: 306 VETGNCIHTLTGHQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCL---QTLQGPNKH 361
Query: 392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430
+VT L + ++T DD + +W+ TG +L+
Sbjct: 362 QSAVTCLQFNKNFVITSS-DDGTVKLWDLKTGEFIRNLV 399
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 29/180 (16%)
Query: 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGH 205
TL H R+ ++ +H +V+ S D SIR+W G+C GH
Sbjct: 274 TLQGHTNRVYSLQFDGIH---------------VVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265
S + K IL SG D+TV++W + + Q L+ TL G K ++
Sbjct: 319 QSLTSGMELK------DNILVSGNADSTVKIWDIKTG-----QCLQ-TLQGPNKHQSAVT 366
Query: 266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325
++T S D V++WD T +R+ + GV ++ + L A GS
Sbjct: 367 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 34/184 (18%)
Query: 118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD----HKARITCMRLFPLHETSLFRSE 173
LDN I S S + IK+ N L E Y T+S+ H+ ++C+R
Sbjct: 482 LDNRQIVSA--SRDRTIKLWNTLGECKY--TISEGGEGHRDWVSCVRF-----------S 526
Query: 174 PQRTENVLVTSSCDHSIRLWWKGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231
P + +V++S D ++++W +C+ GH G VST++ + DGS + ASGG+D
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVA--VSPDGS--LCASGGKD 582
Query: 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291
V LW L+ K LY E + ++ + + + + +++WD +
Sbjct: 583 GVVLLWDLAEGKK---------LYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633
Query: 292 SAVR 295
S V
Sbjct: 634 SIVE 637
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 162
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 163 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 216 A-TLDNTLKLWDYSKGKCLKT 235
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 139
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 140 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 193 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 245
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 246 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 299
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 300 IASAALENDKTIKLWKSD 317
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 40 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 92
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 93 KTLKIWDVSSGKCLKT 108
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 156
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 157 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 210 A-TLDNTLKLWDYSKGKCLKT 229
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 133
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 134 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 186
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 187 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 239
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 293
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 294 IASAALENDKTIKLWKSD 311
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 34 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 86
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 87 KTLKIWDVSSGKCLKT 102
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 156
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 157 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 210 A-TLDNTLKLWDYSKGKCLKT 229
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 133
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 134 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 186
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 187 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 239
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 293
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 294 IASAALENDKTIKLWKSD 311
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 34 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 86
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 87 KTLKIWDVSSGKCLKT 102
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 155
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 156 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 208
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 209 A-TLDNTLKLWDYSKGKCLKT 228
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 132
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 133 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 185
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 186 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 238
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 239 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 292
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 293 IASAALENDKTIKLWKSD 310
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 33 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSS-DSNLLVSASDD 85
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 86 KTLKIWDVSSGKCLKT 101
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 162
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 163 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 216 A-TLDNTLKLWDYSKGKCLKT 235
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 139
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 140 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 193 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 245
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 246 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 299
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 300 IASAALENDKTIKLWKSD 317
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 40 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 92
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 93 KTLKIWDVSSGKCLKT 108
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 152
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 153 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 205
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 206 A-TLDNTLKLWDYSKGKCLKT 225
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 129
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 130 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 182
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 183 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 235
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 236 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 289
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 290 IASAALENDKTIKLWKSD 307
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 30 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 82
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 83 KTLKIWDVSSGKCLKT 98
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 173
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 174 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 226
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 227 A-TLDNTLKLWDYSKGKCLKT 246
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 150
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 151 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 203
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 204 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 256
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 257 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 310
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 311 IASAALENDKTIKLWKSD 328
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 51 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 103
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 104 KTLKIWDVSSGKCLKT 119
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 157
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 158 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 210
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 211 A-TLDNTLKLWDYSKGKCLKT 230
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 134
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 135 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 187
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 188 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 240
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 241 IFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 294
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 295 IASAALENDKTIKLWKSD 312
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 35 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 87
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 88 KTLKIWDVSSGKCLKT 103
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 178
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 179 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 232 A-TLDNTLKLWDYSKGKCLKT 251
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 155
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 156 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 208
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 209 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 261
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + K L GH V P + +
Sbjct: 262 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHTDVVISTACHPTENI 315
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 316 IASAALENDKTIKLWKSD 333
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 56 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 108
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 109 KTLKIWDVSSGKCLKT 124
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 136
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 137 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 181 LVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
++ ++ D++++LW KG C + + GH + G GK + SG ED V +W+
Sbjct: 210 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSEDNLVYIWN 268
Query: 239 LSS 241
L +
Sbjct: 269 LQT 271
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 37 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSS-DSNLLVSASDD 89
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 90 KTLKIWDVSSGKCLKT 105
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 161
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 162 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 214
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 215 A-TLDNTLKLWDYSKGKCLKT 234
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 138
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 139 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 191
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 181 LVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
++ ++ D++++LW KG C + + GH + G GK + SG ED V +W+
Sbjct: 212 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSEDNLVYIWN 270
Query: 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV---TISKDSKVRVW 286
L + + + L GH + +S A H + ++ + D +++W
Sbjct: 271 LQT------KEIVQKLQGHTDVV--ISTACHPTENIIASAALENDKTIKLW 313
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 39 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 91
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 92 KTLKIWDVSSGKCLKT 107
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 136
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 137 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 181 LVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
++ ++ D++++LW KG C + + GH + G GK + SG ED V +W+
Sbjct: 210 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSEDNLVYIWN 268
Query: 239 LSS 241
L +
Sbjct: 269 LQT 271
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 37 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSS-DSNLLVSASDD 89
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 90 KTLKIWDVSSGKCLKT 105
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV--H 180
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
DGS ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 181 FNRDGS--LIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 233
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 234 A-TLDNTLKLWDYSKGKCLKT 253
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 157
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 158 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 210
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 211 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 263
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + K L GH V P + +
Sbjct: 264 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK------LQGHTDVVISTACHPTENI 317
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 318 IASAALENDKTIKLWKSD 335
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 58 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 110
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 111 KTLKIWDVSSGKCLKT 126
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 162
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 163 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 216 A-TLDNTLKLWDYSKGKCLKT 235
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 139
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 140 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 192
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 181 LVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
++ ++ D++++LW KG C + + GH + G GK + SG ED V +W+
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSEDNLVYIWN 271
Query: 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV---TISKDSKVRVW 286
L + + + L GH + +S A H + ++ + D +++W
Sbjct: 272 LQT------KEIVQKLQGHTDVV--ISTACHPTENIIASAALENDKTIKLW 314
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 40 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSSD-SNLLVSASDD 92
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 93 KTLKIWDVSSGKCLKT 108
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 136
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 137 WDVKTG-----KCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 190 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 242
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 243 IFANFSVTGGKWIVSGSEDNLVYIWNLQT------KEIVQKLQGHTDVVISTACHPTENI 296
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 297 IASAALENDKTIKLWKSD 314
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LA+ D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 37 NGEWLAASSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSS-DSNLLVSASDD 89
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 90 KTLKIWDVSSGKCLKT 105
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 213 A-TLDNDLKLWDYSKGKCLKT 232
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 136
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 137 WDV-----KTGMCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 181 LVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
++ ++ D+ ++LW KG C + + GH + G GK + SG ED V +W+
Sbjct: 210 ILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSEDNMVYIWN 268
Query: 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV---TISKDSKVRVW 286
L + + + L GH + +S A H + ++ + D +++W
Sbjct: 269 LQT------KEIVQKLQGHTDVV--ISTACHPTENIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 37 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSS-DSNLLVSASDD 89
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 90 KTLKIWDVSSGKCLKT 105
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGC 443
+ L GH V + +P ++ G D + IW+ TGM +L P +D +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL----PAHSDPVSAV 158
Query: 444 SAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDS 485
G IV++SY GL + D ++ C LK + +D+
Sbjct: 159 H-FNRDGSLIVSSSY--DGLCRIWDTASGQC--LKTLIDDDN 195
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDK 215
C++ H +F N++V+ S D S+R+W G C + H+ PVS +
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVH-- 159
Query: 216 LLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275
+ G ++ S D R+W +S Q LK + P+ + + + ++L
Sbjct: 160 --FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 276 TISKDSKVRVWDTSTSSAVRS 296
+ D+ +++WD S +++
Sbjct: 213 A-TLDNTLKLWDYSKGKCLKT 232
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N+LV++S D ++++W G C + KGH+ V + + ++ SG D +VR+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN----FNPQSNLIVSGSFDESVRI 136
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
W + + LK TL H P+ + S L+V+ S D R+WDT++ +++
Sbjct: 137 WDV-----KTGMCLK-TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKT 189
Query: 297 SCCVGMTSVPGVPVD-MKCHESMLYIASGSSVVTID---------LRTMQKVMTPAICKP 346
+ PV +K + YI + + T+ L+T C
Sbjct: 190 -----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC-- 242
Query: 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIV 406
I +FS+ K ++ W+++ + + +L GH V P + +
Sbjct: 243 IFANFSVTGGKWIVSGSEDNMVYIWNLQTK------EIVQKLQGHTDVVISTACHPTENI 296
Query: 407 TGG---RDDLRINIWETD 421
+D I +W++D
Sbjct: 297 IASAALENDKTIKLWKSD 314
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
+G+ LAS D +++W + GK + T+ GH+ I ++ + S LLV+ S D
Sbjct: 37 NGEWLASSSADKLIKIWG-AYDGK-----FEKTISGHKLGISDVAWSS-DSNLLVSASDD 89
Query: 281 SKVRVWDTSTSSAVRS 296
+++WD S+ +++
Sbjct: 90 KTLKIWDVSSGKCLKT 105
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGC 443
+ L GH V + +P ++ G D + IW+ TGM +L P +D +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL----PAHSDPVSAV 158
Query: 444 SAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDS 485
G IV++SY GL + D ++ C LK + +D+
Sbjct: 159 H-FNRDGSLIVSSSY--DGLCRIWDTASGQC--LKTLIDDDN 195
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
+C + + A P +H ++D +IF+ + ++++ + L ES + + D K I R
Sbjct: 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNN 264
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
P H +E +E +L T S D ++ LW + + F+ H +
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
+ + ILAS G D + +W LS G+ G L GH I
Sbjct: 325 FQVQ---WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
S ++ +++ ++S+D+ ++VW
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 123/290 (42%), Gaps = 29/290 (10%)
Query: 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFK--GHNGP 208
+H+ + R P + + P + +VLV H + G CQ + GH
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTP--SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE 183
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVA 267
LS +G L S +D T+ LW ++++ K + ++ GH ++ VA
Sbjct: 184 GYGLSWNPNLNG---YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE--DVA 238
Query: 268 GH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325
H L +++ D K+ +WDT ++ + S V + + + S +A+GS
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY-SEFILATGS 297
Query: 326 SVVTI---DLRTMQ-KVMTPAICKPILHSFSIMP-SKSLICTGGIGKAM-TWDIRR---- 375
+ T+ DLR ++ K+ + K + P +++++ + G + + WD+ +
Sbjct: 298 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
Query: 376 --SQDAVK--PQPMAELDGHVGSVTQLHMDPYK--IVTGGRDDLRINIWE 419
++DA P+ + GH ++ +P + I+ +D + +W+
Sbjct: 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
+C + + A P +H ++D +IF+ + ++++ + L ES + + D K I R
Sbjct: 208 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNN 266
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
P H +E +E +L T S D ++ LW + + F+ H +
Sbjct: 267 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 326
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
+ + ILAS G D + +W LS G+ G L GH I
Sbjct: 327 FQVQ---WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
S ++ +++ ++S+D+ ++VW
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 123/290 (42%), Gaps = 29/290 (10%)
Query: 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFK--GHNGP 208
+H+ + R P + + P + +VLV H + G CQ + GH
Sbjct: 128 NHEGEVNRARYMPQNACVIATKTP--SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE 185
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVA 267
LS +G L S +D T+ LW ++++ K + ++ GH ++ VA
Sbjct: 186 GYGLSWNPNLNG---YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE--DVA 240
Query: 268 GH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325
H L +++ D K+ +WDT ++ + S V + + + S +A+GS
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY-SEFILATGS 299
Query: 326 SVVTI---DLRTMQ-KVMTPAICKPILHSFSIMP-SKSLICTGGIGKAM-TWDIRR---- 375
+ T+ DLR ++ K+ + K + P +++++ + G + + WD+ +
Sbjct: 300 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 359
Query: 376 --SQDAVK--PQPMAELDGHVGSVTQLHMDPYK--IVTGGRDDLRINIWE 419
++DA P+ + GH ++ +P + I+ +D + +W+
Sbjct: 360 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
+C + + A P +H ++D +IF+ + ++++ + L ES + + D K I R
Sbjct: 210 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNN 268
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
P H +E +E +L T S D ++ LW + + F+ H +
Sbjct: 269 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 328
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
+ + ILAS G D + +W LS G+ G L GH I
Sbjct: 329 FQVQ---WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
S ++ +++ ++S+D+ ++VW
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 123/290 (42%), Gaps = 29/290 (10%)
Query: 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQ--RCFKGHNGP 208
+H+ + R P + + P + +VLV H + G CQ +GH
Sbjct: 130 NHEGEVNRARYMPQNACVIATKTP--SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE 187
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVA 267
LS +G L S +D T+ LW ++++ K + ++ GH ++ VA
Sbjct: 188 GYGLSWNPNLNG---YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE--DVA 242
Query: 268 GH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325
H L +++ D K+ +WDT ++ + S V + + + S +A+GS
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY-SEFILATGS 301
Query: 326 SVVTI---DLRTMQ-KVMTPAICKPILHSFSIMP-SKSLICTGGIGKAM-TWDIRR---- 375
+ T+ DLR ++ K+ + K + P +++++ + G + + WD+ +
Sbjct: 302 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361
Query: 376 --SQDAVK--PQPMAELDGHVGSVTQLHMDPYK--IVTGGRDDLRINIWE 419
++DA P+ + GH ++ +P + I+ +D + +W+
Sbjct: 362 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV--AGHKSFLLVTISK 279
GK LA+G ED +R+W + + + + L GHE+ I + +G K LV+ S
Sbjct: 135 GKFLATGAEDRLIRIWDIEN------RKIVMILQGHEQDIYSLDYFPSGDK---LVSGSG 185
Query: 280 DSKVRVWDTSTSS-AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325
D VR+WD T ++ S G+T+V P D K YIA+GS
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK------YIAAGS 226
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 181 LVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
L T + D IR+W +GH + +L D SG L SG D TVR+W
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL-DYF---PSGDKLVSGSGDRTVRIWD 193
Query: 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST 290
L + GQ +L ++ E + ++V+ + S D VRVWD+ T
Sbjct: 194 L----RTGQCSLTLSI---EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 27/232 (11%)
Query: 165 HETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSG 222
HE ++ + + + LV+ S D ++R+W G C +G V+T++ + G G
Sbjct: 164 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVA---VSPGDG 219
Query: 223 KILASGGEDATVRLWSLSSSGKRGQQ--ALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
K +A+G D VR+W S +G ++ + + GH+ + + V +V+ S D
Sbjct: 220 KYIAAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSVYSV-VFTRDGQSVVSGSLD 277
Query: 281 SKVRVWDTSTSSAVRSS-------CCVGMTSVPGVPVDMKCHESMLYIASGS---SVVTI 330
V++W+ ++ S C V + + ++ YI SGS V+
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 331 DLRT------MQKVMTPAICKPILHSFSIMPSKSLICTG-GIGKAMTWDIRR 375
D ++ +Q I + + S+ P ++ TG G KA W ++
Sbjct: 338 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 320 YIASGSSVVTI---DLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGKAMTWDIRR 375
++A+G+ I D+ + VM + ++S PS + +G G WD+R
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL 429
Q ++ ++ DG VT + + P K + G D + +W+++TG L L
Sbjct: 197 GQCSLT---LSIEDG----VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 57/265 (21%)
Query: 43 MAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPL 102
+S K+F ++ + D + + W ++ +R++ + L+ FV P
Sbjct: 20 FEISLKIFNYLQFEDIINSLGVSQNWNKI----------IRKSTSLWKKLLISENFVSPK 69
Query: 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY-------RATLSDHKAR 155
++ + L D + S ++NI F+ +++Y R TL H
Sbjct: 70 GFNSLNLKLSQKYPKLSQQD--RLRLSFLENI----FILKNWYNPKFVPQRTTLRGHXTS 123
Query: 156 -ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCF----KGHNGPVS 210
ITC+ Q +N ++T + D IR++ S + F GH+G V
Sbjct: 124 VITCL---------------QFEDNYVITGADDKXIRVY--DSINKKFLLQLSGHDGGVW 166
Query: 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270
L G IL SG D TVR+W + K+G GH ++ + + +K
Sbjct: 167 ALKY-----AHGGILVSGSTDRTVRVWDI----KKG--CCTHVFEGHNSTVRCLDIVEYK 215
Query: 271 SF-LLVTISKDSKVRVWDTSTSSAV 294
+ +VT S+D+ + VW S+V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N++V+ S D+++ +W + C GH + + + D K S D T+R+
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYST----IYDHERKRCISASXDTTIRI 336
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292
W L + L TL GH + L+ ++ LV+ + D +R WD + S
Sbjct: 337 WDLENG------ELXYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYS 383
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 201 CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260
+GH V T+S G G I+ SG D T+ +W ++ Q L GH
Sbjct: 265 VLRGHXASVRTVS------GHGNIVVSGSYDNTLIVWDVA------QXKCLYILSGHTDR 312
Query: 261 IKLMSVAGHKSFLLVTISKDSKVRVWD 287
I ++ H+ ++ S D+ +R+WD
Sbjct: 313 I-YSTIYDHERKRCISASXDTTIRIWD 338
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 57/265 (21%)
Query: 43 MAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKFVDPL 102
+S K+F ++ + D + + W ++ +R++ + L+ FV P
Sbjct: 20 FEISLKIFNYLQFEDIINSLGVSQNWNKI----------IRKSTSLWKKLLISENFVSPK 69
Query: 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY-------RATLSDH-KA 154
++ + L D + S ++NI F+ +++Y R TL H +
Sbjct: 70 GFNSLNLKLSQKYPKLSQQD--RLRLSFLENI----FILKNWYNPKFVPQRTTLRGHMTS 123
Query: 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCF----KGHNGPVS 210
ITC+ Q +N ++T + D IR++ S + F GH+G V
Sbjct: 124 VITCL---------------QFEDNYVITGADDKMIRVY--DSINKKFLLQLSGHDGGVW 166
Query: 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270
L G IL SG D TVR+W + K+G GH ++ + + +K
Sbjct: 167 ALKY-----AHGGILVSGSTDRTVRVWDI----KKG--CCTHVFEGHNSTVRCLDIVEYK 215
Query: 271 SF-LLVTISKDSKVRVWDTSTSSAV 294
+ +VT S+D+ + VW S+V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N++V+ S D+++ +W + C GH + + + D K S D T+R+
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST----IYDHERKRCISASMDTTIRI 336
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292
W L + L TL GH + L+ ++ LV+ + D +R WD + S
Sbjct: 337 WDLENG------ELMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYS 383
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 201 CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260
+GH V T+S G G I+ SG D T+ +W ++ Q L GH
Sbjct: 265 VLRGHMASVRTVS------GHGNIVVSGSYDNTLIVWDVA------QMKCLYILSGHTDR 312
Query: 261 IKLMSVAGHKSFLLVTISKDSKVRVWD 287
I ++ H+ ++ S D+ +R+WD
Sbjct: 313 I-YSTIYDHERKRCISASMDTTIRIWD 338
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 26/189 (13%)
Query: 201 CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260
C H+ VST+S +L G+ + SG +D +++W L+ QQ + ++ H
Sbjct: 122 CKYEHDDIVSTVS--VLSSGTQAV--SGSKDICIKVWDLA------QQVVLSSYRAHAAQ 171
Query: 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG-VPVDMKCH---- 315
+ ++ + HK + ++ S+D+++ +WDT C S PG +P + H
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----SAPGYLPTSLAWHPQQS 227
Query: 316 ESMLYIASGSSVVTIDLRTMQKVMTPAI---CKPIL----HSFSIMPSKSLICTGGIGKA 368
E ++ +V +D ++ V++ A+ C L HS + S S C+ + +
Sbjct: 228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287
Query: 369 MTWDIRRSQ 377
++ RSQ
Sbjct: 288 SLSELFRSQ 296
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 22/145 (15%)
Query: 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPV 209
H A + C+ L P T N V+ CD +W G C + F+ H V
Sbjct: 195 HGADVLCLDL-----------APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269
+++ GD ASG +DAT RL+ L + + + ++ ++G S++G
Sbjct: 244 NSVRYYPSGDA----FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD--FSLSGR 297
Query: 270 KSFLLVTISKDSKVRVWDTSTSSAV 294
LL D + VWD S V
Sbjct: 298 ---LLFAGYNDYTINVWDVLKGSRV 319
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 106/273 (38%), Gaps = 67/273 (24%)
Query: 132 QNIKIDNFLSESY-YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190
+N+ + ++E R TL H +T + P + ++++++S D +I
Sbjct: 16 ENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTP------------QFPDMILSASRDKTI 63
Query: 191 RLWW-------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243
+W G QR +GH+ VS ++ G+ SG D T+RLW L++
Sbjct: 64 IMWKLTRDETNYGIPQRALRGHSHFVS----DVVISSDGQFALSGSWDGTLRLWDLTTG- 118
Query: 244 KRGQQALKATLYGHEKPIKLMSVA-GHKSFLLVTISKDSKVRVWDT--------STSSAV 294
GH K + +SVA + +V+ S+D +++W+T S
Sbjct: 119 -----TTTRRFVGHTKDV--LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK--------- 345
CV + P+ + C L KV A CK
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLV----------------KVWNLANCKLKTNHIGHT 215
Query: 346 PILHSFSIMPSKSLICTGGI-GKAMTWDIRRSQ 377
L++ ++ P SL +GG G+AM WD+ +
Sbjct: 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178
DN I S GS + IK+ N L Y H ++C+R P +
Sbjct: 139 DNRQIVS--GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF-----------SPNSSN 185
Query: 179 NVLVTSSCDHSIRLWWKGSCQRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
++V+ D +++W +C+ GH G ++T++ + DGS + ASGG+D L
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT--VSPDGS--LCASGGKDGQAML 241
Query: 237 WSLS 240
W L+
Sbjct: 242 WDLN 245
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+ V+ +CD S +LW +G C++ F GH ++ + +G A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
L R Q L Y H+ I + SV+ KS LL+ D VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 92/272 (33%), Gaps = 57/272 (20%)
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV-----RSSCC 299
R Q + TL GH I M G S LLV+ S+D K+ +WD+ T++ V RSS
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 300 VGMTSVPGVPVDMKCHESMLYIASGS-----SVVTIDLRTMQKVMTPAIC--KPILHSFS 352
+ P S Y+A G S+ + R ++ + L
Sbjct: 101 MTCAYAP----------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 353 IMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-YKIVTGGRD 411
+ ++ + G WDI Q H G V L + P ++ G
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG------HTGDVMSLSLAPDTRLFVSGAC 204
Query: 412 DLRINIWETDTGMLANSL---------LCNYPEEADISTG-----CSAMAVSG------- 450
D +W+ GM + +C +P +TG C +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 451 ------CRIVTASYGEPGLLQFRDFSNATCPV 476
C I + S+ + G L + + C V
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-WKGSC 198
+ E R T + H++ I + FP N T S D + RL+ +
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP-------------NGNAFATGSDDATCRLFDLRADQ 259
Query: 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258
+ H+ + ++ SG++L +G +D +W + + G L GH+
Sbjct: 260 ELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG------VLAGHD 312
Query: 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+ + V + T S DS +++W+
Sbjct: 313 NRVSCLGVT-DDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+ V+ +CD S +LW +G C++ F GH ++ + +G A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
L R Q L Y H+ I + SV+ KS LL+ D VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 92/272 (33%), Gaps = 57/272 (20%)
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV-----RSSCC 299
R Q + TL GH I M G S LL++ S+D K+ +WD+ T++ V RSS
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 300 VGMTSVPGVPVDMKCHESMLYIASGS-----SVVTIDLRTMQKVMTPAIC--KPILHSFS 352
+ P S Y+A G S+ + R ++ + L
Sbjct: 101 MTCAYAP----------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 353 IMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-YKIVTGGRD 411
+ ++ + G WDI Q H G V L + P ++ G
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG------HTGDVMSLSLAPDTRLFVSGAC 204
Query: 412 DLRINIWETDTGMLANSL---------LCNYPEEADISTG-----CSAMAVSG------- 450
D +W+ GM + +C +P +TG C +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 451 ------CRIVTASYGEPGLLQFRDFSNATCPV 476
C I + S+ + G L + + C V
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-WKGSC 198
+ E R T + H++ I + FP N T S D + RL+ +
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP-------------NGNAFATGSDDATCRLFDLRADQ 259
Query: 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258
+ H+ + ++ SG++L +G +D +W + + G L GH+
Sbjct: 260 ELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG------VLAGHD 312
Query: 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+ + V + T S DS +++W+
Sbjct: 313 NRVSCLGVT-DDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+ V+ +CD S +LW +G C++ F GH ++ + +G A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
L R Q L Y H+ I + SV+ KS LL+ D VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 92/272 (33%), Gaps = 57/272 (20%)
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV-----RSSCC 299
R Q + TL GH I M G S LLV+ S+D K+ +WD+ T++ V RSS
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 300 VGMTSVPGVPVDMKCHESMLYIASGS-----SVVTIDLRTMQKVMTPAIC--KPILHSFS 352
+ P S Y+A G S+ + R ++ + L
Sbjct: 101 MTCAYAP----------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 353 IMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-YKIVTGGRD 411
+ ++ + G WDI Q H G V L + P ++ G
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG------HTGDVMSLSLAPDTRLFVSGAC 204
Query: 412 DLRINIWETDTGMLANSL---------LCNYPEEADISTG-----CSAMAVSG------- 450
D +W+ GM + +C +P +TG C +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 451 ------CRIVTASYGEPGLLQFRDFSNATCPV 476
C I + S+ + G L + + C V
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-WKGSC 198
+ E R T + H++ I + FP N T S D + RL+ +
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP-------------NGNAFATGSDDATCRLFDLRADQ 259
Query: 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258
+ H+ + ++ SG++L +G +D +W + + G L GH+
Sbjct: 260 ELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG------VLAGHD 312
Query: 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+ + V + T S DS +++W+
Sbjct: 313 NRVSCLGVT-DDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+ V+ +CD S +LW +G C++ F GH ++ + +G A+G +DAT RL+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 253
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
L R Q L Y H+ I + SV+ KS LL+ D VWD
Sbjct: 254 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 92/272 (33%), Gaps = 57/272 (20%)
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV-----RSSCC 299
R Q + TL GH I M G S LL++ S+D K+ +WD+ T++ V RSS
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV 100
Query: 300 VGMTSVPGVPVDMKCHESMLYIASGS-----SVVTIDLRTMQKVMTPAIC--KPILHSFS 352
+ P S Y+A G S+ + R ++ + L
Sbjct: 101 MTCAYAP----------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 353 IMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-YKIVTGGRD 411
+ ++ + G WDI Q H G V L + P ++ G
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG------HTGDVMSLSLAPDTRLFVSGAC 204
Query: 412 DLRINIWETDTGMLANSL---------LCNYPEEADISTG-----CSAMAVSG------- 450
D +W+ GM + +C +P +TG C +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 451 ------CRIVTASYGEPGLLQFRDFSNATCPV 476
C I + S+ + G L + + C V
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-WKGSC 198
+ E R T + H++ I + FP N T S D + RL+ +
Sbjct: 213 VREGMCRQTFTGHESDINAICFFP-------------NGNAFATGSDDATCRLFDLRADQ 259
Query: 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258
+ H+ + ++ SG++L +G +D +W + + G L GH+
Sbjct: 260 ELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG------VLAGHD 312
Query: 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+ + V + T S DS +++W+
Sbjct: 313 NRVSCLGVT-DDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+ V+ +CD S +LW +G C++ F GH ++ + +G A+G +DAT RL+
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF----PNGNAFATGSDDATCRLF 264
Query: 238 SLSSSGKRGQQALKATLYGHEKPI-KLMSVAGHKS-FLLVTISKDSKVRVWD 287
L R Q L Y H+ I + SV+ KS LL+ D VWD
Sbjct: 265 DL-----RADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 309
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 92/272 (33%), Gaps = 57/272 (20%)
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV-----RSSCC 299
R Q + TL GH I M G S LLV+ S+D K+ +WD+ T++ V RSS
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV 111
Query: 300 VGMTSVPGVPVDMKCHESMLYIASGS-----SVVTIDLRTMQKVMTPAIC--KPILHSFS 352
+ P S Y+A G S+ + R ++ + L
Sbjct: 112 MTCAYAP----------SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 161
Query: 353 IMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-YKIVTGGRD 411
+ ++ + G WDI Q H G V L + P ++ G
Sbjct: 162 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTG------HTGDVMSLSLAPDTRLFVSGAC 215
Query: 412 DLRINIWETDTGMLANSL---------LCNYPEEADISTG-----CSAMAVSG------- 450
D +W+ GM + +C +P +TG C +
Sbjct: 216 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 275
Query: 451 ------CRIVTASYGEPGLLQFRDFSNATCPV 476
C I + S+ + G L + + C V
Sbjct: 276 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 307
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 140 LSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-WKGSC 198
+ E R T + H++ I + FP N T S D + RL+ +
Sbjct: 224 VREGMCRQTFTGHESDINAICFFP-------------NGNAFATGSDDATCRLFDLRADQ 270
Query: 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258
+ H+ + ++ SG++L +G +D +W + + G L GH+
Sbjct: 271 ELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG------VLAGHD 323
Query: 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+ + V + T S DS +++W+
Sbjct: 324 NRVSCLGVT-DDGMAVATGSWDSFLKIWN 351
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263
GH+GP+S L + + K+L S +D T+R+W G G + YGH + I
Sbjct: 245 GHHGPISVLE----FNDTNKLLLSASDDGTLRIW----HGGNGNS--QNCFYGHSQSIVS 294
Query: 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310
S G +++ S D VR+W +++ + + ++ V GVP+
Sbjct: 295 ASWVGDDK--VISCSMDGSVRLW------SLKQNTLLALSIVDGVPI 333
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 173 EPQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE 230
E T +L+++S D ++R+W G+ Q CF GH+ S +S +GD + S
Sbjct: 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDDK---VISCSM 308
Query: 231 DATVRLWSL 239
D +VRLWSL
Sbjct: 309 DGSVRLWSL 317
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 124/288 (43%), Gaps = 25/288 (8%)
Query: 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQ--RCFKGHNGP 208
+H+ + R P + + P + +VLV H + G C +GH
Sbjct: 124 NHEGEVNRARYMPQNPHIIATKTP--SSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKE 181
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA-LKATLYGHEKPIKLMSVA 267
LS + SG +L S +D TV LW +++ K G+ KA GH ++ ++
Sbjct: 182 GYGLS--WNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWH 238
Query: 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327
L +++ D K+ +WDT +++ + S V + + + S +A+GS+
Sbjct: 239 LLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-SEFILATGSAD 297
Query: 328 VTI---DLRTMQ-KVMTPAICKPILHSFSIMP-SKSLICTGGIGKAMT-WDIRR------ 375
T+ DLR ++ K+ T K + P +++++ + G + + WD+ +
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 376 SQDAVK--PQPMAELDGHVGSVTQLHMDPYK--IVTGGRDDLRINIWE 419
++DA P+ + GH ++ +P + ++ +D + IW+
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
VC + + A P + ++D IF+ + ++++ + L ES + + D K I R
Sbjct: 204 VCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRSN 262
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
P H +E +E +L T S D ++ LW + + F+ H +
Sbjct: 263 TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
+ + ILAS G D + +W LS G+ G L GH I
Sbjct: 323 FQVH---WSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
S ++ +++ ++S+D+ +++W
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 66/258 (25%)
Query: 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-------KGSC 198
R TL H +T + P + ++++++S D +I +W G
Sbjct: 8 RGTLKGHNGWVTQIATTP------------QFPDMILSASRDKTIIMWKLTRDETNYGIP 55
Query: 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258
QR +GH+ VS ++ G+ SG D T+RLW L++ GH
Sbjct: 56 QRALRGHSHFVS----DVVISSDGQFALSGSWDGTLRLWDLTTG------TTTRRFVGHT 105
Query: 259 KPIKLMSVA-GHKSFLLVTISKDSKVRVWDT--------STSSAVRSSCCVGMTSVPGVP 309
K + +SVA + +V+ S+D +++W+T S CV + P
Sbjct: 106 KDV--LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK---------PILHSFSIMPSKSLI 360
+ + C L KV A CK L++ ++ P SL
Sbjct: 164 IIVSCGWDKLV----------------KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 207
Query: 361 CTGGI-GKAMTWDIRRSQ 377
+GG G+AM WD+ +
Sbjct: 208 ASGGKDGQAMLWDLNEGK 225
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178
DN I S GS + IK+ N L Y H ++C+R P +
Sbjct: 116 DNRQIVS--GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF-----------SPNSSN 162
Query: 179 NVLVTSSCDHSIRLWWKGSCQRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
++V+ D +++W +C+ GH G ++T++ + DGS + ASGG+D L
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT--VSPDGS--LCASGGKDGQAML 218
Query: 237 WSLS 240
W L+
Sbjct: 219 WDLN 222
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 99/216 (45%), Gaps = 19/216 (8%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQA-LKATLYGHEKPIKLMSVAGHKSFLLVTISK 279
SG +L S +D TV LW +++ K G+ KA GH ++ ++ L +++
Sbjct: 192 SGHLL-SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI---DLRTMQ 336
D K+ +WDT +++ + S V + + + S +A+GS+ T+ DLR ++
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY-SEFILATGSADKTVALWDLRNLK 309
Query: 337 -KVMTPAICKPILHSFSIMP-SKSLICTGGIGKAMT-WDIRR------SQDAVK--PQPM 385
K+ T K + P +++++ + G + + WD+ + ++DA P+ +
Sbjct: 310 LKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELL 369
Query: 386 AELDGHVGSVTQLHMDPYK--IVTGGRDDLRINIWE 419
GH ++ +P + ++ +D IW+
Sbjct: 370 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
VC + + A P + ++D IF+ + ++++ + L ES + + D K I R
Sbjct: 204 VCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-HLLHESLFGSVADDQKLXIWDTRSN 262
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
P H +E +E +L T S D ++ LW + + F+ H +
Sbjct: 263 TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
+ + ILAS G D + +W LS G+ G L GH I
Sbjct: 323 FQVH---WSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
S ++ +++ ++S+D+ ++W
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 181 LVTSSCDHSIRLWWKGS---------CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231
L+++S DH++ LW + + F GH+ V ++ LL + + S +D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES---LFGSVADD 251
Query: 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+ +W S+ L + H + +S + F+L T S D V +WD
Sbjct: 252 QKLXIWDTRSNTTSKPSHL---VDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 224 ILASGGEDATVRLWSLSSSGKRG-QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSK 282
+LA+G D+TV +W+ S R + L A + GHE +K ++ + + + L T S+D
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKS 130
Query: 283 VRVWDTSTS 291
V +W+T S
Sbjct: 131 VWIWETDES 139
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 70/255 (27%)
Query: 42 NMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFKF--- 98
N+ S KL+K + +W F + +L +GS R+I L+ K+
Sbjct: 5 NLIKSLKLYK-----EKIWSFDFSQG---ILATGSTD----------RKIKLVSVKYDDF 46
Query: 99 --VDPLDVCFYSVA------KPHDHIL----LDNN-DIFSTQGSSIQNIKID-------- 137
+D LD + A +PH +L D+ I++ + S+ + ++D
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH 106
Query: 138 -------NFLSESYYRATLSDHKA-----------RITCMRLFPLHETSLFRSEPQRTEN 179
+ ++ YY AT S K+ C+ + H + +E
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA 166
Query: 180 VLVTSSCDHSIRLW------WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT 233
+L +SS D ++R+W W+ C GH G V + SD +G + L SG +D+T
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWE--CVAVLNGHEGTVWS-SDFDKTEGVFR-LCSGSDDST 222
Query: 234 VRLWSLSSSGKRGQQ 248
VR+W + QQ
Sbjct: 223 VRVWKYMGDDEDDQQ 237
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 179 NVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
N V++S DHS+RLW G CQ F GH V LS D + + SGG D +R+
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDV--LSVAFSPD--NRQIVSGGRDNALRV 135
Query: 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVA-GHKSFLLVTISKDSKVRVWDTSTSSAV 294
W++ +G+ + H + + + + ++V+ D+ V+VWD +T V
Sbjct: 136 WNV-----KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 104 VCFYSV-AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF 162
+C + + A P + ++D IF+ + ++++ + L ES + + D K I R
Sbjct: 202 ICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSW-HLLHESLFGSVADDQKLMIWDTRSN 260
Query: 163 ----PLHETSLFRSEPQ------RTENVLVTSSCDHSIRLWWKGSCQ---RCFKGHNGPV 209
P H +E +E +L T S D ++ LW + + F+ H +
Sbjct: 261 NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 320
Query: 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR--------GQQALKATLYGHEKPI 261
+ + ILAS G D + +W LS G+ G L GH I
Sbjct: 321 FQVQ---WSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 262 KLMSVAGHKSFLLVTISKDSKVRVW 286
S ++ +++ ++S+D+ ++VW
Sbjct: 378 SDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 98/216 (45%), Gaps = 19/216 (8%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISK 279
SG +L S +D T+ LW +S+ K G+ T++ GH ++ +S L +++
Sbjct: 190 SGHLL-SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVAD 248
Query: 280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI---DLRTMQ 336
D K+ +WDT +++ + S V + + + S +A+GS+ T+ DLR ++
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY-SEFILATGSADKTVALWDLRNLK 307
Query: 337 -KVMTPAICKPILHSFSIMP-SKSLICTGGIGKAMT-WDIRRSQDAVKPQPMAE------ 387
K+ + K + P +++++ + G + + WD+ + + P+ +
Sbjct: 308 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELL 367
Query: 388 --LDGHVGSVTQLHMDPYK--IVTGGRDDLRINIWE 419
GH ++ +P + ++ +D + +W+
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 181 LVTSSCDHSIRLWWKGSCQR---------CFKGHNGPVSTLSDKLLGDGSGKILASGGED 231
L+++S DH+I LW + + F GH V +S LL + + S +D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES---LFGSVADD 249
Query: 232 ATVRLW-SLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+ +W + S++ + ++ A H + +S + F+L T S D V +WD
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDA----HTAEVNCLSFNPYSEFILATGSADKTVALWD 302
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG-KRGQQALKATLYGHEKPIK 262
GH PV ++ D ++ASG ED TV +W + G + TL GH K +
Sbjct: 79 GHTAPVLDIAWXPHND---NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294
+++ +L++ D+ + VWD T +AV
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAV 167
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG-KRGQQALKATLYGHEKPIK 262
GH PV ++ D ++ASG ED TV +W + G + TL GH K +
Sbjct: 79 GHTAPVLDIAWCPHND---NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294
+++ +L++ D+ + VWD T +AV
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV 167
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 179 NVLVTSSCDHSIRLW---WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVR 235
N+ ++ SCD ++RLW R + GH G ++++ K D G+ +G +D T R
Sbjct: 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV--KFFPD--GQRFGTGSDDGTCR 274
Query: 236 LWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDT 288
L+ + + + + +E PI LL + VWDT
Sbjct: 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 141 SESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQR 200
S++ R +S + + C R H ++ + +N +V++S D + +W + Q+
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 201 --CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGH 257
K H V + +G+ +A GG D+ +++LSS R G + L GH
Sbjct: 101 THAIKLHCPWVMECAFA----PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH 156
Query: 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294
+ + L+T S D +WD +T +
Sbjct: 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI 193
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259
R GH G S+ + + D +++ G D T LW +++ G+R GH
Sbjct: 151 RVLTGHKGYASSC--QYVPDQETRLITGSG-DQTCVLWDVTT-GQRISIFGSEFPSGHTA 206
Query: 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTS-TSSAVRS 296
+ +S+ + + ++ S D+ VR+WD TS AVR+
Sbjct: 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264
H+ V TLS + DG+ + SGG+D +V++W LS Q+A+ + H + +
Sbjct: 138 HDDIVKTLS--VFSDGTQAV--SGGKDFSVKVWDLS------QKAVLKSYNAHSSEVNCV 187
Query: 265 SVAGHKSFLLVTISKDSKVRVWDT 288
+ K + ++ +D ++ +WDT
Sbjct: 188 AACPGKDTIFLSCGEDGRILLWDT 211
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 177 TENVLVTSSCDHSIRLW-WKG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT 233
T+ +++ S D +++LW W+ + ++ F+GH V ++ ASG D T
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA---FNPKDPSTFASGCLDRT 164
Query: 234 VRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVA--GHKSFLLVTISKDSKVRVWDTST 290
V++WSL GQ TL G E+ + + K + ++T S D +++WD T
Sbjct: 165 VKVWSL------GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQT 217
Query: 291 SSAV 294
S V
Sbjct: 218 KSCV 221
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 27/179 (15%)
Query: 128 GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187
GS +K+ N+ + T H+ + C+ P + + + D
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP------------KDPSTFASGCLD 162
Query: 188 HSIRLWWKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
++++W G F G V+ + L D I AS +D T+++W +
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQT--- 217
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGM 302
++ ATL GH + H + ++++ S+D +++W++ST V + VG+
Sbjct: 218 ---KSCVATLEGHMSNVSF--AVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVGL 270
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 177 TENVLVTSSCDHSIRLW-WKG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT 233
T+ +++ S D +++LW W+ + ++ F+GH V ++ ASG D T
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA---FNPKDPSTFASGCLDRT 164
Query: 234 VRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVA--GHKSFLLVTISKDSKVRVWDTST 290
V++WSL GQ TL G E+ + + K + ++T S D +++WD T
Sbjct: 165 VKVWSL------GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQT 217
Query: 291 SSAV 294
S V
Sbjct: 218 KSCV 221
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 73/179 (40%), Gaps = 27/179 (15%)
Query: 128 GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187
GS +K+ N+ + T H+ + C+ P + + + D
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP------------KDPSTFASGCLD 162
Query: 188 HSIRLWWKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
++++W G F G V+ + L D I AS +D T+++W +
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQT--- 217
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGM 302
++ ATL GH + H + ++++ S+D +++W++ST V + VG+
Sbjct: 218 ---KSCVATLEGHMSNVSF--AVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVGL 270
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 32/215 (14%)
Query: 55 YSDSVWQRLFREQWPQVLVSGSLPTVRVREAYLARRIALLQFK-FVDPLDVCFYSVAKPH 113
++D+V+ F E ++ G+ T++V +A + LL+ K D + C +S
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEK--LLEIKAHEDEVLCCAFST---- 673
Query: 114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSE 173
+D F S + +KI N ++ T +H ++ C F +
Sbjct: 674 -------DDRFIATCSVDKKVKIWNSMTGELVH-TYDEHSEQVNCCH---------FTNS 716
Query: 174 PQRTENVLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231
+L T S D ++LW + C+ GH V+ K+LAS D
Sbjct: 717 SHHL--LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCR----FSPDDKLLASCSAD 770
Query: 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266
T++LW +S+ +R +K E P + M V
Sbjct: 771 GTLKLWDATSANERKSINVKQFFLNLEDPQEDMEV 805
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS 281
G+ +AS G D T++++ + G++ L+ + HE + + + F+ T S D
Sbjct: 633 GQRIASCGADKTLQVFK----AETGEKLLE--IKAHEDEVLCCAFSTDDRFI-ATCSVDK 685
Query: 282 KVRVWDTSTSSAVRS 296
KV++W++ T V +
Sbjct: 686 KVKIWNSMTGELVHT 700
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 49/279 (17%)
Query: 128 GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187
GS +K+ N+ + T H+ + C+ P + + + D
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP------------KDPSTFASGCLD 162
Query: 188 HSIRLWWKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
++++W G F G V+ + L D I AS +D T+++W +
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQT--- 217
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGMT 303
++ ATL GH + H + ++++ S+D +++W++ST V + VG+
Sbjct: 218 ---KSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVGLE 271
Query: 304 S---VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360
+ P K YIASG V++ +P L S+ P L+
Sbjct: 272 RSWCIATHPTGRKN-----YIASG-------FDNGFTVLSLGNDEPTL---SLDPVGKLV 316
Query: 361 CTGGIGKA----MTWDIRRSQDAVKPQPMAELDGHVGSV 395
+GG A T IR +++ + +P++ +GSV
Sbjct: 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV 355
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 177 TENVLVTSSCDHSIRLW-WKG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT 233
T+ +++ S D +++LW W+ + ++ F+GH V ++ ASG D T
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA---FNPKDPSTFASGCLDRT 164
Query: 234 VRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVA--GHKSFLLVTISKDSKVRVWDTST 290
V++WSL GQ TL G E+ + + K + ++T S D +++WD T
Sbjct: 165 VKVWSL------GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQT 217
Query: 291 SSAV 294
S V
Sbjct: 218 KSCV 221
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 111/279 (39%), Gaps = 49/279 (17%)
Query: 128 GSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187
GS +K+ N+ + T H+ + C+ P + + + D
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP------------KDPSTFASGCLD 162
Query: 188 HSIRLWWKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
++++W G F G V+ + L D I AS +D T+++W +
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQT--- 217
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGMT 303
++ ATL GH + H + ++++ S+D +++W++ST V + VG+
Sbjct: 218 ---KSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVGLE 271
Query: 304 S---VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360
+ P K YIASG V++ +P L S+ P L+
Sbjct: 272 RSWCIATHPTGRKN-----YIASG-------FDNGFTVLSLGNDEPTL---SLDPVGKLV 316
Query: 361 CTGGIGKA----MTWDIRRSQDAVKPQPMAELDGHVGSV 395
+GG A T IR +++ + +P++ +GSV
Sbjct: 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV 355
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 177 TENVLVTSSCDHSIRLW-WKG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT 233
T+ +++ S D +++LW W+ + ++ F+GH V ++ ASG D T
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA---FNPKDPSTFASGCLDRT 164
Query: 234 VRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVA--GHKSFLLVTISKDSKVRVWDTST 290
V++WSL GQ TL G E+ + + K + ++T S D +++WD T
Sbjct: 165 VKVWSL------GQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITASDDLTIKIWDYQT 217
Query: 291 SSAV 294
S V
Sbjct: 218 KSCV 221
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 36/151 (23%)
Query: 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRC---------F 202
H+ + ++ +P H+T +F S SS D ++++W + Q +
Sbjct: 98 HRYSVETVQWYP-HDTGMFTS-----------SSFDKTLKVWDTNTLQTADVFNFEETVY 145
Query: 203 KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262
H PVST ++A G V+L L S + L GH + I
Sbjct: 146 SHHMSPVST---------KHCLVAVGTRGPKVQLCDLKSG------SCSHILQGHRQEIL 190
Query: 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSA 293
+S + ++L T S DS+V++WD +S
Sbjct: 191 AVSWSPRYDYILATASADSRVKLWDVRRASG 221
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 119 DNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177
DN I S + IK+ N L E + A +H ++C+R P+ +++ ++ Q
Sbjct: 129 DNRQILSAGAE--REIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA---NKVQPF 183
Query: 178 ENVLVTSSCDHSIRLWWKG-SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236
+ D +++W + FK H V+ LS +GK +A+GG+D + +
Sbjct: 184 APYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI----SPNGKYIATGGKDKKLLI 239
Query: 237 WSL 239
W +
Sbjct: 240 WDI 242
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 180 VLVTSSCDHSIRLWW-KGSCQRC----FKGHNGPVSTLSDKLLGDGSGKILASGGEDATV 234
+L + D IR+W +G C +GH V K+ G LAS DAT
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR----KVAWSPCGNYLASASFDATT 85
Query: 235 RLWSLSSSGKRGQQALK--ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWD 287
+W K+ Q + TL GHE +K ++ A + LL T S+D V VW+
Sbjct: 86 CIW------KKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWE 133
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS----CQRCFKGHN 206
D + C+ + H + ++ +L ++S D +++L+ + C +GH
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE 194
Query: 207 GPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
V +L+ D SG+ LAS +D TVR+W
Sbjct: 195 STVWSLA----FDPSGQRLASCSDDRTVRIW 221
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 158 CMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK-GSCQRCFKGHNGPVSTLSDKL 216
++ H +S++ + + ++S D +++LW + G + GH+ V ++
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 477
Query: 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT 276
G+ +AS +D TV+LW+ + GQ L TL GH ++ ++ + + +
Sbjct: 478 ----DGQTIASASDDKTVKLWN-----RNGQ--LLQTLTGHSSSVRGVAFS-PDGQTIAS 525
Query: 277 ISKDSKVRVWD 287
S D V++W+
Sbjct: 526 ASDDKTVKLWN 536
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 30/251 (11%)
Query: 180 VLVTSSCDHSIRLWWK-GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238
+ ++S D +++LW + G + GH+ V ++ G+ +AS +D TV+LW+
Sbjct: 194 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP----DGQTIASASDDKTVKLWN 249
Query: 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298
+ GQ L TL GH + ++ + + S D V++W+ + + +
Sbjct: 250 -----RNGQ--LLQTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWN--RNGQLLQTL 299
Query: 299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL--RTMQKVMTPAICKPILHSFSIMPS 356
+SV GV IAS S T+ L R Q + T + + P
Sbjct: 300 TGHSSSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPD 355
Query: 357 KSLICTGGIGKAMT-WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP-YKIVTGGRDDLR 414
I + K + W+ Q + L GH SV + P + + DD
Sbjct: 356 GQTIASASDDKTVKLWN-------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 415 INIWETDTGML 425
+ +W + +L
Sbjct: 409 VKLWNRNGQLL 419
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 25/208 (12%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS 281
G+ +AS +D TV+LW+ + GQ L TL GH + ++ + + + S D
Sbjct: 28 GQTIASASDDKTVKLWN-----RNGQ--LLQTLTGHSSSVWGVAFS-PDGQTIASASDDK 79
Query: 282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL--RTMQKVM 339
V++W+ + + + +SV GV IAS S T+ L R Q +
Sbjct: 80 TVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQT----IASASDDKTVKLWNRNGQLLQ 133
Query: 340 TPAICKPILHSFSIMPSKSLICTGGIGKAMT-WDIRRSQDAVKPQPMAELDGHVGSVTQL 398
T + + P I + K + W+ Q + L GH SV +
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-------RNGQLLQTLTGHSSSVWGV 186
Query: 399 HMDP-YKIVTGGRDDLRINIWETDTGML 425
P + + DD + +W + +L
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNGQLL 214
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWWKGSCQ--RCFK 203
ATL H ++ +R+ P +E ++V ++++ D ++ W Q F
Sbjct: 142 ATLLGHNDWVSQVRVVP--------NEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFI 193
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241
GHN ++TL+ G ++AS G+D + LW+L++
Sbjct: 194 GHNSNINTLT----ASPDGTLIASAGKDGEIXLWNLAA 227
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 348 LHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP---YK 404
LH+ + + + ++ IG+ WD R Q +P + L G + + P +
Sbjct: 194 LHAVTFLRTPEILTVNSIGQLKIWDFR--QQGNEPSQILSLTGDRVPLHCVDRHPNQQHV 251
Query: 405 IVTGGRDDLRINIWETDTGMLANSLLCNYPEE 436
+ TGG+D + ++IW+ G + SLL + E
Sbjct: 252 VATGGQDGM-LSIWDVRQGTMPVSLLKAHEAE 282
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWWKGSCQ--RCFK 203
ATL H ++ +R+ P +E ++V ++++ D ++ W Q F
Sbjct: 142 ATLLGHNDWVSQVRVVP--------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA 252
GHN ++TL+ G ++AS G+D + LW+L++ K+ L A
Sbjct: 194 GHNSNINTLT----ASPDGTLIASAGKDGEIMLWNLAA--KKAMYTLSA 236
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWWKGSCQ--RCFK 203
ATL H ++ +R+ P +E ++V ++++ D ++ W Q F
Sbjct: 142 ATLLGHNDWVSQVRVVP--------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241
GHN ++TL+ G ++AS G+D + LW+L++
Sbjct: 194 GHNSNINTLT----ASPDGTLIASAGKDGEIMLWNLAA 227
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWWKGSCQ--RCFK 203
ATL H ++ +R+ P +E ++V ++++ D ++ W Q F
Sbjct: 142 ATLLGHNDWVSQVRVVP--------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241
GHN ++TL+ G ++AS G+D + LW+L++
Sbjct: 194 GHNSNINTLT----ASPDGTLIASAGKDGEIMLWNLAA 227
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWWKGSCQ--RCFK 203
ATL H ++ +R+ P +E ++V ++++ D ++ W Q F
Sbjct: 136 ATLLGHNDWVSQVRVVP--------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 187
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241
GHN ++TL+ G ++AS G+D + LW+L++
Sbjct: 188 GHNSNINTLT----ASPDGTLIASAGKDGEIMLWNLAA 221
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCDHSIRLWWKGSCQ--RCFK 203
ATL H ++ +R+ P +E ++V ++++ D ++ W Q F
Sbjct: 142 ATLLGHNDWVSQVRVVP--------NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241
GHN ++TL+ G ++AS G+D + LW+L++
Sbjct: 194 GHNSNINTLT----ASPDGTLIASAGKDGEIMLWNLAA 227
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNG 207
T++ H+AR+ C+ +S RS +V + +H I G+ Q GH+
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI---ANHQI-----GTLQ----GHSS 218
Query: 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267
V L+ + G LASGG D V++W SS K T H +K ++
Sbjct: 219 EVCGLAWR----SDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWC 268
Query: 268 GHKSFLLVT--ISKDSKVRVWDTSTSSAVRS 296
+S LL T + D ++ W+ +T + V +
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNT 299
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 156 ITCMRLFPLHETSL--FRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCF---KGHNGP 208
+ C++ + H ++ + P R N+L++ S DH++RLW + F +GH
Sbjct: 105 MQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
V + LLG+ KI+ S G D +++LW ++S KR A+K +
Sbjct: 164 VLSADYDLLGE---KIM-SCGMDHSLKLWRINS--KRMMNAIKES 202
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 156 ITCMRLFPLHETSL--FRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCF---KGHNGP 208
+ C++ + H ++ + P R N+L++ S DH++RLW + F +GH
Sbjct: 141 MQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 199
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
V + LLG+ KI+ S G D +++LW ++S KR A+K +
Sbjct: 200 VLSADYDLLGE---KIM-SCGMDHSLKLWRINS--KRMMNAIKES 238
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 156 ITCMRLFPLHETSL--FRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCF---KGHNGP 208
+ C++ + H ++ + P R N+L++ S DH++RLW + F +GH
Sbjct: 100 MQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 158
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
V + LLG+ KI+ S G D +++LW ++S KR A+K +
Sbjct: 159 VLSADYDLLGE---KIM-SCGMDHSLKLWRINS--KRMMNAIKES 197
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 156 ITCMRLFPLHETSL--FRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCF---KGHNGP 208
+ C++ + H ++ + P R N+L++ S DH++RLW + F +GH
Sbjct: 104 MQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
V + LLG+ KI+ S G D +++LW ++S KR A+K +
Sbjct: 163 VLSADYDLLGE---KIM-SCGMDHSLKLWRINS--KRMMNAIKES 201
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+L T S D ++LW + C+ GH V+ ++LAS D T+RLW
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLW 777
Query: 238 SLSSSGKRGQQALKATLYGHEKP 260
+ S+ +R +K E P
Sbjct: 778 DVRSANERKSINVKRFFLSSEDP 800
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS 281
G+ +AS G D T++++ + G++ L + HE + + + S++ T S D
Sbjct: 634 GQRIASCGADKTLQVFK----AETGEKLLD--IKAHEDEVLCCAFSSDDSYI-ATCSADK 686
Query: 282 KVRVWDTSTSSAVRS 296
KV++WD++T V +
Sbjct: 687 KVKIWDSATGKLVHT 701
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 61/211 (28%)
Query: 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK 279
GK L S ED+ +++W+ + QA + T+ K +L+ + L++ S
Sbjct: 1020 ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV----KDFRLL-----QDSRLLSWSF 1070
Query: 280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339
D V+VW+ T R D CH+ + + SS T +
Sbjct: 1071 DGTVKVWNVITGRIER---------------DFTCHQGTVLSCAISSDAT------KFSS 1109
Query: 340 TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSV--TQ 397
T A + SF ++ P+ EL GH G V +
Sbjct: 1110 TSADKTAKIWSFDLLS----------------------------PLHELKGHNGCVRCSA 1141
Query: 398 LHMDPYKIVTGGRDDLRINIWETDTGMLANS 428
+D + TG D+ I IW G L +S
Sbjct: 1142 FSLDGILLATGD-DNGEIRIWNVSDGQLLHS 1171
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 160 RLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG--SCQRCFKGHNGPVSTLSDKLL 217
R F H+ ++ ++S D + ++W S KGHNG V + L
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL- 1144
Query: 218 GDGSGKILASGGEDATVRLWSLS 240
G +LA+G ++ +R+W++S
Sbjct: 1145 ---DGILLATGDDNGEIRIWNVS 1164
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 180 VLVTSSCDHSIRLW--WKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+L T S D ++LW + C+ GH V+ ++LAS D T+RLW
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLW 770
Query: 238 SLSSSGKRGQQALKATLYGHEKP 260
+ S+ +R +K E P
Sbjct: 771 DVRSANERKSINVKRFFLSSEDP 793
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS 281
G+ +AS G D T++++ + G++ L + HE + + + S++ T S D
Sbjct: 627 GQRIASCGADKTLQVFK----AETGEKLLD--IKAHEDEVLCCAFSSDDSYI-ATCSADK 679
Query: 282 KVRVWDTSTSSAVRS 296
KV++WD++T V +
Sbjct: 680 KVKIWDSATGKLVHT 694
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 61/211 (28%)
Query: 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK 279
GK L S ED+ +++W+ + QA + T+ K +L+ + L++ S
Sbjct: 1013 ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV----KDFRLL-----QDSRLLSWSF 1063
Query: 280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339
D V+VW+ T R D CH+ + + SS T +
Sbjct: 1064 DGTVKVWNVITGRIER---------------DFTCHQGTVLSCAISSDAT------KFSS 1102
Query: 340 TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSV--TQ 397
T A + SF ++ P+ EL GH G V +
Sbjct: 1103 TSADKTAKIWSFDLLS----------------------------PLHELKGHNGCVRCSA 1134
Query: 398 LHMDPYKIVTGGRDDLRINIWETDTGMLANS 428
+D + TG D+ I IW G L +S
Sbjct: 1135 FSLDGILLATGD-DNGEIRIWNVSDGQLLHS 1164
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 160 RLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG--SCQRCFKGHNGPVSTLSDKLL 217
R F H+ ++ ++S D + ++W S KGHNG V + L
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL- 1137
Query: 218 GDGSGKILASGGEDATVRLWSLS 240
G +LA+G ++ +R+W++S
Sbjct: 1138 ---DGILLATGDDNGEIRIWNVS 1157
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 156 ITCMRLFPLHETSL--FRSEPQRTENVLVTSSCDHSIRLW--WKGSCQRCF---KGHNGP 208
+ C++ + H ++ + P R N+L++ S DH++RLW + F +GH
Sbjct: 104 MQCIKHYVGHGNAINELKFHP-RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
V + LLG+ KI+ S G D +++LW ++S KR A+K +
Sbjct: 163 VLSADYDLLGE---KIM-SCGMDHSLKLWRINS--KRMMNAIKES 201
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT--ISK 279
G+ LASGG D V +W S+ G+ G L+ T H+ +K ++ +S +L T +
Sbjct: 162 GRHLASGGNDNLVNVWP-SAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGTS 219
Query: 280 DSKVRVWDT 288
D +R+W+
Sbjct: 220 DRHIRIWNV 228
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
HNG V ++S L +G IL+S G+D VRLW + S +
Sbjct: 303 HNGEVWSVSWNL----TGTILSSAGDDGKVRLWKATYSNE 338
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 222 GKILASGGEDATVRLWSLSS-----SGKRGQQAL-----KATLYGHEKPIKLMSVAGHKS 271
G+I+AS D TV+LW SG+R + K +LY +K H
Sbjct: 69 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS----VKF--APAHLG 122
Query: 272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309
L + D +R++D S +RS V +P
Sbjct: 123 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 160
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
HNG V ++S L +G IL+S G+D VRLW + S +
Sbjct: 305 HNGEVWSVSWNL----TGTILSSAGDDGKVRLWKATYSNE 340
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 222 GKILASGGEDATVRLWSLSS-----SGKRGQQAL-----KATLYGHEKPIKLMSVAGHKS 271
G+I+AS D TV+LW SG+R + K +LY +K H
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS----VKF--APAHLG 124
Query: 272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309
L + D +R++D S +RS V +P
Sbjct: 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244
HNG V ++S L +G IL+S G+D VRLW + S +
Sbjct: 305 HNGEVWSVSWNL----TGTILSSAGDDGKVRLWKATYSNE 340
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 222 GKILASGGEDATVRLWSLSS-----SGKRGQQAL-----KATLYGHEKPIKLMSVAGHKS 271
G+I+AS D TV+LW SG+R + K +LY +K H
Sbjct: 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS----VKF--APAHLG 124
Query: 272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309
L + D +R++D S +RS V +P
Sbjct: 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIP 162
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT--ISK 279
G+ LASGG D V +W S+ G+ G L+ T H+ +K ++ +S +L T +
Sbjct: 242 GRHLASGGNDNLVNVWP-SAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGTS 299
Query: 280 DSKVRVWD 287
D +R+W+
Sbjct: 300 DRHIRIWN 307
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT--ISK 279
G+ LASGG D V +W S+ G+ G L+ T H+ +K ++ +S +L T +
Sbjct: 253 GRHLASGGNDNLVNVWP-SAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGTS 310
Query: 280 DSKVRVWD 287
D +R+W+
Sbjct: 311 DRHIRIWN 318
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 454 VTASYGEPGLLQFRDFSNATCPVLKHEVQN 483
VT+ YG L+QF DF+NA L H+ +N
Sbjct: 220 VTSRYGXNCLIQFEDFANANAFRLLHKYRN 249
>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase
From Thermus Thermophilus Hb8,Oah2
Length = 412
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV-----PGVPVDMKCHESM 318
M+++ ++LL + +RV S ++ + G V PG+P D +
Sbjct: 262 MALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR 321
Query: 319 LYIASGSSVVTIDLRTMQK 337
Y+ASG ++T+DL +++
Sbjct: 322 KYLASGGPILTLDLGDLER 340
>pdb|2F77|X Chain X, Solution Structure Of The R55f Mutant Of M-Pmv Matrix
Protein (P10)
Length = 100
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 452 RIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGP--QCYSD 495
R V Y + LL+F DF TCP E D KFW C+ D
Sbjct: 22 RGVKVKYAD--LLKFFDFVKDTCPWFPQEGTIDIKFWRRVGDCFQD 65
>pdb|3JYW|0 Chain 0, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 109
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA 293
RG + YG K K +S +GHK+FL+ + KD + T T +A
Sbjct: 34 RGNISQPKIGYGSNKKTKFLSPSGHKTFLVANV-KDLETLTMHTKTYAA 81
>pdb|1S1I|0 Chain 0, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h.
pdb|3IZS|HH Chain h, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|BB Chain b, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|BB Chain b, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|EE Chain e, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|EE Chain e, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|EE Chain e, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 130
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA 293
RG + YG K K +S +GHK+FL+ + KD + T T +A
Sbjct: 47 RGNISQPKIGYGSNKKTKFLSPSGHKTFLVANV-KDLETLTMHTKTYAA 94
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 204 GHNGPVSTL----------SDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253
G+ PVS L S KLL DG I+ GGE +T+ +W L++ R +KA
Sbjct: 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV--GGEASTLSIWDLAAPTPR----IKAE 136
Query: 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR 295
L ++++ S + + D + VWD + VR
Sbjct: 137 LTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVR 177
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 178 ENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW 237
+ V+++ S D + ++W +GS + HN V K++ K L + D T++LW
Sbjct: 114 DGVVISGSWDKTAKVWKEGSLVYNLQAHNASV--WDAKVVSFSENKFLTASA-DKTIKLW 170
Query: 238 SLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296
+ + +K H ++ ++V F ++ S D +++ D T +R+
Sbjct: 171 -------QNDKVIKTFSGIHNDVVRHLAVVDDGHF--ISCSNDGLIKLVDXHTGDVLRT 220
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 177 TENVLVTSSCDHSIRLWWKGSCQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGEDATVR 235
+EN +T+S D +I+LW + F G HN V L+ ++ DG S D ++
Sbjct: 154 SENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLA--VVDDGH---FISCSNDGLIK 208
Query: 236 LWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292
L + + T GHE + + + + +V+ +D VR+W S
Sbjct: 209 LVDXHTG------DVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGS 257
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 354 MPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDG 390
M SK++I GG+G ++ + VKP+PM E+ G
Sbjct: 1 MASKAVILAGGLGTRLS-----EETIVKPKPMVEIGG 32
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV 283
++A+ DATV+LW L + + + HEKP+ S L+T + +++
Sbjct: 219 LMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEI 275
Query: 284 RVW 286
RV+
Sbjct: 276 RVY 278
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV 283
++A+ DATV+LW L + + + HEKP+ S L+T + +++
Sbjct: 218 LMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEI 274
Query: 284 RVW 286
RV+
Sbjct: 275 RVY 277
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
SG+ L S +D +++WS+ K G TL GH + +++ +L + S D
Sbjct: 150 SGEALISSSQDMQLKIWSV----KDGSNP--RTLIGHRATVTDIAIIDRGRNVL-SASLD 202
Query: 281 SKVRVWDTSTSSAVRS 296
+R+W+ T + + +
Sbjct: 203 GTIRLWECGTGTTIHT 218
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD 280
SG+ L S +D +++WS+ K G TL GH + +++ +L + S D
Sbjct: 147 SGEALISSSQDMQLKIWSV----KDGSNP--RTLIGHRATVTDIAIIDRGRNVL-SASLD 199
Query: 281 SKVRVWDTSTSSAVRS 296
+R+W+ T + + +
Sbjct: 200 GTIRLWECGTGTTIHT 215
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFL---- 273
G + +GG D V++W +S + L++TL GH ++ VA + L
Sbjct: 166 GTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVR--DVAWSPTVLLRSY 221
Query: 274 LVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV--PVDMKCHESMLYIASGSSVVTID 331
L ++S+D +W + P V ++L ++ G + VT+
Sbjct: 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Query: 332 LRTMQKVMTPA 342
++ PA
Sbjct: 282 KENLEGKWEPA 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,642,668
Number of Sequences: 62578
Number of extensions: 578737
Number of successful extensions: 1811
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 305
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)