Query 010784
Match_columns 501
No_of_seqs 711 out of 4400
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.5E-54 1.2E-58 363.6 28.6 329 105-468 110-479 (480)
2 KOG0281 Beta-TrCP (transducin 100.0 8E-52 1.7E-56 346.4 24.7 375 15-476 70-483 (499)
3 KOG0271 Notchless-like WD40 re 100.0 2E-48 4.4E-53 329.9 26.9 308 143-489 105-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-48 3.6E-53 334.6 22.7 282 107-468 172-458 (459)
5 KOG0286 G-protein beta subunit 100.0 3.1E-42 6.8E-47 282.5 29.4 285 102-468 47-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 6.5E-44 1.4E-48 306.5 20.0 261 151-490 173-459 (459)
7 KOG0274 Cdc4 and related F-box 100.0 3.5E-42 7.6E-47 326.1 32.3 374 12-475 100-487 (537)
8 KOG0279 G protein beta subunit 100.0 8.8E-42 1.9E-46 278.1 29.5 290 103-470 8-313 (315)
9 KOG0315 G-protein beta subunit 100.0 6E-41 1.3E-45 268.7 28.6 281 121-478 9-296 (311)
10 KOG0286 G-protein beta subunit 100.0 5.4E-41 1.2E-45 275.2 27.7 272 144-489 46-343 (343)
11 KOG0284 Polyadenylation factor 100.0 5.7E-42 1.2E-46 293.2 19.7 284 110-474 96-384 (464)
12 KOG0319 WD40-repeat-containing 100.0 9.7E-41 2.1E-45 306.1 28.5 353 108-491 103-619 (775)
13 KOG0319 WD40-repeat-containing 100.0 1.9E-39 4.1E-44 297.6 29.9 354 112-495 64-581 (775)
14 KOG0318 WD40 repeat stress pro 100.0 3.2E-38 6.9E-43 278.7 36.3 343 107-491 187-602 (603)
15 KOG0295 WD40 repeat-containing 100.0 7.8E-40 1.7E-44 276.2 23.4 286 101-468 99-404 (406)
16 KOG0285 Pleiotropic regulator 100.0 1.3E-39 2.8E-44 274.2 24.5 289 105-470 146-439 (460)
17 KOG0273 Beta-transducin family 100.0 3.5E-39 7.5E-44 281.1 27.6 275 111-470 236-523 (524)
18 KOG0279 G protein beta subunit 100.0 4.1E-38 8.8E-43 256.8 27.9 266 144-492 6-314 (315)
19 KOG0296 Angio-associated migra 100.0 5.7E-38 1.2E-42 265.1 29.7 328 100-470 54-398 (399)
20 KOG0318 WD40 repeat stress pro 100.0 2.8E-37 6.1E-42 272.8 35.3 373 104-494 53-563 (603)
21 KOG0273 Beta-transducin family 100.0 5.2E-38 1.1E-42 273.8 28.4 304 105-490 173-503 (524)
22 KOG0645 WD40 repeat protein [G 100.0 2.5E-37 5.4E-42 251.1 30.3 290 106-470 10-311 (312)
23 KOG0291 WD40-repeat-containing 100.0 6.2E-37 1.3E-41 281.7 36.5 357 104-493 90-552 (893)
24 KOG0285 Pleiotropic regulator 100.0 2.2E-38 4.7E-43 266.8 23.7 270 143-495 141-443 (460)
25 KOG0291 WD40-repeat-containing 100.0 4.2E-37 9.1E-42 282.7 32.9 330 107-473 262-615 (893)
26 KOG0263 Transcription initiati 100.0 7.8E-38 1.7E-42 290.0 28.0 245 105-423 373-651 (707)
27 KOG0265 U5 snRNP-specific prot 100.0 1E-37 2.2E-42 257.0 24.9 287 143-467 37-335 (338)
28 KOG0295 WD40 repeat-containing 100.0 7.5E-38 1.6E-42 264.3 21.9 266 144-489 99-404 (406)
29 KOG0306 WD40-repeat-containing 100.0 2.4E-37 5.3E-42 284.2 26.9 328 112-471 67-665 (888)
30 KOG0281 Beta-TrCP (transducin 100.0 1.5E-38 3.2E-43 266.9 17.1 256 152-496 196-482 (499)
31 KOG0276 Vesicle coat complex C 100.0 4.1E-37 8.9E-42 277.0 23.5 278 109-466 12-295 (794)
32 KOG0266 WD40 repeat-containing 100.0 3.3E-36 7.1E-41 287.3 30.3 283 110-470 159-454 (456)
33 KOG0315 G-protein beta subunit 100.0 8.2E-36 1.8E-40 239.3 26.3 264 110-446 40-308 (311)
34 KOG0313 Microtubule binding pr 100.0 5.3E-36 1.1E-40 254.5 26.3 308 87-470 70-418 (423)
35 KOG0263 Transcription initiati 100.0 4.4E-37 9.6E-42 285.0 21.4 246 149-475 374-654 (707)
36 KOG0316 Conserved WD40 repeat- 100.0 7.9E-36 1.7E-40 237.5 24.3 279 105-468 12-297 (307)
37 KOG0292 Vesicle coat complex C 100.0 6.5E-36 1.4E-40 279.4 27.7 335 106-492 5-349 (1202)
38 KOG0284 Polyadenylation factor 100.0 8.4E-37 1.8E-41 261.6 18.7 263 152-496 95-385 (464)
39 KOG0278 Serine/threonine kinas 100.0 1.1E-36 2.4E-41 244.4 17.5 289 104-475 8-302 (334)
40 cd00200 WD40 WD40 domain, foun 100.0 1.5E-34 3.2E-39 263.9 32.1 281 106-468 5-289 (289)
41 PLN00181 protein SPA1-RELATED; 100.0 3.4E-34 7.4E-39 294.2 35.6 292 109-469 482-792 (793)
42 KOG0645 WD40 repeat protein [G 100.0 5E-34 1.1E-38 232.0 28.6 270 144-491 5-311 (312)
43 KOG0265 U5 snRNP-specific prot 100.0 1.1E-34 2.5E-39 239.1 23.5 279 106-419 43-336 (338)
44 KOG0282 mRNA splicing factor [ 100.0 2.2E-35 4.8E-40 258.4 20.0 287 104-468 208-503 (503)
45 KOG0277 Peroxisomal targeting 100.0 2.7E-34 5.9E-39 231.3 22.5 279 113-469 11-308 (311)
46 KOG0293 WD40 repeat-containing 100.0 4.8E-34 1E-38 245.1 24.1 283 107-472 221-515 (519)
47 KOG0316 Conserved WD40 repeat- 100.0 1.3E-33 2.7E-38 224.9 24.1 250 144-474 8-261 (307)
48 KOG0275 Conserved WD40 repeat- 100.0 1E-34 2.2E-39 241.9 18.3 281 107-419 210-507 (508)
49 KOG0276 Vesicle coat complex C 100.0 8.3E-34 1.8E-38 255.8 23.8 247 144-470 4-257 (794)
50 KOG0282 mRNA splicing factor [ 100.0 2.4E-34 5.3E-39 251.9 17.0 270 143-489 204-503 (503)
51 KOG0266 WD40 repeat-containing 100.0 2.7E-32 5.9E-37 260.4 30.7 270 147-491 152-454 (456)
52 KOG0310 Conserved WD40 repeat- 100.0 1.9E-32 4.2E-37 240.5 24.4 281 111-473 27-312 (487)
53 KOG0268 Sof1-like rRNA process 100.0 3.1E-33 6.8E-38 236.3 18.4 307 83-474 38-349 (433)
54 PLN00181 protein SPA1-RELATED; 100.0 1.1E-31 2.4E-36 275.8 32.4 279 131-490 457-792 (793)
55 KOG0306 WD40-repeat-containing 100.0 4E-31 8.7E-36 243.5 31.3 311 112-468 23-482 (888)
56 cd00200 WD40 WD40 domain, foun 100.0 5.6E-31 1.2E-35 240.2 31.6 263 146-489 2-289 (289)
57 KOG0643 Translation initiation 100.0 5.6E-32 1.2E-36 219.6 21.1 295 105-471 5-318 (327)
58 KOG1407 WD40 repeat protein [F 100.0 2.4E-31 5.2E-36 215.2 24.4 276 147-462 14-296 (313)
59 KOG0296 Angio-associated migra 100.0 4.8E-31 1E-35 223.4 26.0 310 144-491 55-398 (399)
60 KOG0313 Microtubule binding pr 100.0 1.5E-31 3.3E-36 227.5 22.9 288 151-491 103-418 (423)
61 KOG0283 WD40 repeat-containing 100.0 1.1E-31 2.4E-36 251.5 22.2 297 108-473 265-579 (712)
62 KOG0292 Vesicle coat complex C 100.0 5.3E-31 1.1E-35 246.8 26.4 258 104-429 45-329 (1202)
63 KOG0277 Peroxisomal targeting 100.0 1.9E-31 4E-36 215.0 19.2 246 106-420 56-308 (311)
64 KOG0647 mRNA export protein (c 100.0 1.3E-30 2.9E-35 215.3 24.1 270 150-457 24-312 (347)
65 KOG0973 Histone transcription 100.0 5.4E-31 1.2E-35 253.2 24.4 290 110-473 13-358 (942)
66 KOG0643 Translation initiation 100.0 2.9E-30 6.3E-35 209.7 24.8 271 148-491 5-317 (327)
67 KOG0288 WD40 repeat protein Ti 100.0 1.3E-31 2.7E-36 230.4 15.6 280 144-467 166-458 (459)
68 KOG0772 Uncharacterized conser 100.0 1.9E-30 4E-35 229.2 23.0 294 104-467 161-484 (641)
69 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-29 6.7E-34 209.2 28.8 282 109-471 13-304 (311)
70 KOG0640 mRNA cleavage stimulat 100.0 2.4E-30 5.1E-35 214.6 22.0 288 104-470 106-426 (430)
71 KOG0305 Anaphase promoting com 100.0 3.8E-30 8.2E-35 235.0 25.3 274 113-472 180-463 (484)
72 KOG0275 Conserved WD40 repeat- 100.0 4.6E-31 9.9E-36 220.1 17.4 260 151-490 211-508 (508)
73 KOG0641 WD40 repeat protein [G 100.0 8.8E-29 1.9E-33 196.3 29.4 297 104-470 26-349 (350)
74 KOG0299 U3 snoRNP-associated p 100.0 9.2E-30 2E-34 222.0 26.0 293 104-472 136-459 (479)
75 KOG1036 Mitotic spindle checkp 100.0 2.2E-29 4.8E-34 209.0 25.0 269 152-459 12-295 (323)
76 KOG0308 Conserved WD40 repeat- 100.0 2.4E-30 5.1E-35 234.8 20.5 242 115-423 29-287 (735)
77 KOG1408 WD40 repeat protein [F 100.0 4.9E-29 1.1E-33 228.5 28.3 360 106-492 74-714 (1080)
78 KOG0300 WD40 repeat-containing 100.0 9.3E-30 2E-34 211.8 21.1 291 105-473 143-479 (481)
79 KOG0293 WD40 repeat-containing 100.0 1.5E-29 3.2E-34 217.6 23.0 269 144-493 215-515 (519)
80 KOG0289 mRNA splicing factor [ 100.0 3.9E-29 8.4E-34 216.4 25.6 276 112-469 221-505 (506)
81 KOG0278 Serine/threonine kinas 100.0 3E-30 6.5E-35 207.6 14.3 268 145-493 6-299 (334)
82 KOG0274 Cdc4 and related F-box 100.0 1.1E-28 2.4E-33 234.5 26.5 255 152-495 207-486 (537)
83 KOG0294 WD40 repeat-containing 100.0 4.7E-28 1E-32 201.5 26.5 265 125-472 4-283 (362)
84 PTZ00421 coronin; Provisional 100.0 4.8E-28 1E-32 230.1 30.2 262 113-450 23-315 (493)
85 KOG0264 Nucleosome remodeling 100.0 4.7E-29 1E-33 217.6 21.3 258 150-470 121-404 (422)
86 PTZ00421 coronin; Provisional 100.0 3.8E-28 8.2E-33 230.7 29.4 239 177-474 31-294 (493)
87 KOG0300 WD40 repeat-containing 100.0 5.9E-29 1.3E-33 207.0 20.0 275 143-492 138-477 (481)
88 KOG0264 Nucleosome remodeling 100.0 1.2E-28 2.5E-33 215.2 21.6 253 107-421 121-404 (422)
89 KOG1446 Histone H3 (Lys4) meth 100.0 2.8E-27 6E-32 197.6 28.5 256 144-477 5-269 (311)
90 KOG1408 WD40 repeat protein [F 100.0 3.6E-28 7.8E-33 222.9 24.9 327 115-470 329-713 (1080)
91 KOG4283 Transcription-coupled 100.0 1.5E-27 3.2E-32 196.6 25.4 302 106-470 39-365 (397)
92 PTZ00420 coronin; Provisional 100.0 3.6E-27 7.9E-32 224.9 31.9 247 127-451 49-319 (568)
93 KOG0305 Anaphase promoting com 100.0 5.5E-28 1.2E-32 220.9 23.9 237 110-423 217-463 (484)
94 KOG0640 mRNA cleavage stimulat 100.0 3E-28 6.6E-33 202.1 19.7 278 144-490 103-425 (430)
95 KOG0268 Sof1-like rRNA process 100.0 4.7E-29 1E-33 211.1 15.0 261 199-493 59-347 (433)
96 KOG1539 WD repeat protein [Gen 100.0 5.3E-27 1.2E-31 219.0 29.3 354 103-489 195-646 (910)
97 KOG1332 Vesicle coat complex C 100.0 7.1E-28 1.5E-32 193.3 20.3 259 148-476 6-292 (299)
98 KOG0301 Phospholipase A2-activ 100.0 1.5E-27 3.2E-32 218.3 25.1 276 103-470 7-288 (745)
99 KOG0310 Conserved WD40 repeat- 100.0 7.6E-28 1.6E-32 211.7 22.2 237 112-422 70-310 (487)
100 KOG0288 WD40 repeat protein Ti 100.0 8.9E-29 1.9E-33 212.9 15.7 272 108-418 173-458 (459)
101 KOG1407 WD40 repeat protein [F 100.0 4.9E-27 1.1E-31 190.4 24.0 268 107-412 17-293 (313)
102 KOG0289 mRNA splicing factor [ 100.0 2.7E-27 5.8E-32 205.1 24.0 237 154-468 220-460 (506)
103 KOG0772 Uncharacterized conser 100.0 9.4E-28 2E-32 212.2 20.8 282 146-488 160-484 (641)
104 KOG0301 Phospholipase A2-activ 100.0 1.2E-27 2.7E-32 218.8 22.0 261 143-492 4-289 (745)
105 PTZ00420 coronin; Provisional 100.0 1E-26 2.2E-31 221.8 27.9 230 184-473 50-296 (568)
106 KOG0308 Conserved WD40 repeat- 100.0 5.4E-28 1.2E-32 219.6 17.9 239 177-472 36-287 (735)
107 KOG0294 WD40 repeat-containing 100.0 1.2E-26 2.5E-31 193.3 23.8 241 104-423 37-283 (362)
108 KOG2106 Uncharacterized conser 100.0 1.6E-25 3.4E-30 197.8 31.3 354 102-491 96-521 (626)
109 KOG1332 Vesicle coat complex C 100.0 2.4E-27 5.3E-32 190.3 17.7 252 109-421 10-286 (299)
110 KOG0299 U3 snoRNP-associated p 100.0 1E-26 2.2E-31 203.1 22.6 252 146-474 135-414 (479)
111 KOG0269 WD40 repeat-containing 100.0 3.6E-27 7.9E-32 218.4 18.6 289 110-475 39-345 (839)
112 KOG1063 RNA polymerase II elon 100.0 1.7E-25 3.7E-30 204.9 28.8 355 106-491 187-699 (764)
113 KOG0269 WD40 repeat-containing 100.0 2.4E-27 5.1E-32 219.6 16.5 248 113-429 90-348 (839)
114 KOG2445 Nuclear pore complex c 99.9 1.4E-25 3E-30 186.2 24.3 273 149-472 9-320 (361)
115 KOG1539 WD repeat protein [Gen 99.9 1.2E-25 2.5E-30 210.1 26.5 329 106-468 240-646 (910)
116 KOG0267 Microtubule severing p 99.9 7.9E-28 1.7E-32 221.1 11.5 252 121-458 3-258 (825)
117 KOG2096 WD40 repeat protein [G 99.9 2.9E-25 6.2E-30 185.2 25.6 296 145-471 78-403 (420)
118 KOG0283 WD40 repeat-containing 99.9 3.9E-26 8.5E-31 214.4 21.1 234 200-494 260-579 (712)
119 KOG2048 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 198.8 30.2 334 109-471 24-412 (691)
120 KOG0647 mRNA export protein (c 99.9 7E-25 1.5E-29 181.6 24.2 265 112-408 29-310 (347)
121 KOG0639 Transducin-like enhanc 99.9 8.3E-26 1.8E-30 199.4 19.1 277 108-469 417-703 (705)
122 KOG0641 WD40 repeat protein [G 99.9 5.3E-24 1.1E-28 169.3 26.5 251 205-470 31-303 (350)
123 KOG2055 WD40 repeat protein [G 99.9 9.1E-25 2E-29 191.0 24.3 286 111-470 214-512 (514)
124 KOG0646 WD40 repeat protein [G 99.9 3.6E-25 7.8E-30 193.9 21.7 265 123-455 51-336 (476)
125 KOG2106 Uncharacterized conser 99.9 3.6E-24 7.8E-29 189.3 27.6 333 111-490 247-625 (626)
126 KOG0973 Histone transcription 99.9 5.7E-25 1.2E-29 212.0 23.9 268 152-494 12-358 (942)
127 KOG0646 WD40 repeat protein [G 99.9 4.6E-25 9.9E-30 193.3 20.7 257 106-420 77-349 (476)
128 KOG4328 WD40 protein [Function 99.9 1.1E-24 2.4E-29 190.3 22.9 297 104-468 180-493 (498)
129 KOG1063 RNA polymerase II elon 99.9 9.1E-24 2E-28 193.7 29.0 336 108-470 265-699 (764)
130 KOG1274 WD40 repeat protein [G 99.9 7.3E-24 1.6E-28 200.4 28.0 281 107-467 10-297 (933)
131 KOG2445 Nuclear pore complex c 99.9 4.5E-24 9.7E-29 177.4 22.9 260 109-421 12-318 (361)
132 KOG0270 WD40 repeat-containing 99.9 9.4E-25 2E-29 190.1 19.7 239 121-427 191-455 (463)
133 KOG1036 Mitotic spindle checkp 99.9 1.2E-23 2.6E-28 175.1 24.1 261 111-410 14-293 (323)
134 KOG0321 WD40 repeat-containing 99.9 5.4E-24 1.2E-28 193.4 23.9 294 120-477 62-398 (720)
135 KOG1273 WD40 repeat protein [G 99.9 1.7E-23 3.6E-28 174.5 24.5 291 113-477 26-329 (405)
136 KOG0650 WD40 repeat nucleolar 99.9 3.5E-24 7.6E-29 193.1 21.7 300 102-467 392-732 (733)
137 KOG4283 Transcription-coupled 99.9 2E-24 4.4E-29 178.3 18.0 218 203-476 40-282 (397)
138 KOG2096 WD40 repeat protein [G 99.9 6.5E-24 1.4E-28 177.2 20.3 265 104-374 80-402 (420)
139 KOG1274 WD40 repeat protein [G 99.9 6E-23 1.3E-27 194.3 26.8 246 150-471 10-263 (933)
140 KOG0302 Ribosome Assembly prot 99.9 9.9E-24 2.2E-28 180.0 19.3 248 109-419 150-436 (440)
141 KOG0267 Microtubule severing p 99.9 4E-25 8.6E-30 203.4 10.9 229 107-410 25-257 (825)
142 KOG0302 Ribosome Assembly prot 99.9 1.2E-23 2.6E-28 179.5 18.0 213 147-421 145-378 (440)
143 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.3E-22 9.4E-27 183.1 29.7 266 123-474 2-283 (300)
144 KOG0639 Transducin-like enhanc 99.9 3.3E-23 7.1E-28 183.1 20.0 258 151-490 417-703 (705)
145 KOG2919 Guanine nucleotide-bin 99.9 2.8E-22 6E-27 167.9 23.9 281 113-458 52-360 (406)
146 KOG0270 WD40 repeat-containing 99.9 5.2E-23 1.1E-27 179.3 20.0 290 114-474 129-453 (463)
147 KOG0321 WD40 repeat-containing 99.9 8E-23 1.7E-27 185.9 21.0 282 177-493 63-393 (720)
148 KOG1009 Chromatin assembly com 99.9 3.7E-22 8E-27 172.2 20.8 309 109-474 12-376 (434)
149 KOG2048 WD40 repeat protein [G 99.9 7.2E-21 1.6E-25 174.5 29.5 334 111-473 155-508 (691)
150 KOG0307 Vesicle coat complex C 99.9 4.8E-23 1E-27 199.8 15.1 288 114-473 10-330 (1049)
151 KOG1034 Transcriptional repres 99.9 9.5E-22 2.1E-26 165.1 20.0 322 108-470 36-383 (385)
152 KOG1445 Tumor-specific antigen 99.9 1.1E-21 2.5E-26 178.3 21.5 146 323-475 601-755 (1012)
153 KOG4328 WD40 protein [Function 99.9 1.7E-21 3.7E-26 170.6 21.6 261 144-473 177-453 (498)
154 KOG2055 WD40 repeat protein [G 99.9 2E-21 4.3E-26 170.3 21.5 267 206-493 213-514 (514)
155 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-21 7.6E-26 170.2 20.9 261 111-404 35-305 (673)
156 KOG1273 WD40 repeat protein [G 99.9 6.9E-21 1.5E-25 159.0 21.3 262 156-491 26-322 (405)
157 KOG0307 Vesicle coat complex C 99.9 1.8E-22 4E-27 195.8 13.7 242 113-424 67-330 (1049)
158 KOG1007 WD repeat protein TSSC 99.9 2.3E-20 5E-25 154.1 23.9 287 113-472 17-363 (370)
159 KOG4378 Nuclear protein COP1 [ 99.9 7.9E-21 1.7E-25 168.0 19.9 271 123-478 5-288 (673)
160 KOG0322 G-protein beta subunit 99.9 5.1E-21 1.1E-25 155.9 17.2 303 105-469 9-322 (323)
161 KOG0649 WD40 repeat protein [G 99.9 9.1E-20 2E-24 146.9 24.1 269 114-419 14-314 (325)
162 KOG1188 WD40 repeat protein [G 99.9 2E-20 4.4E-25 158.0 20.6 279 123-470 41-346 (376)
163 KOG1517 Guanine nucleotide bin 99.9 3.1E-20 6.7E-25 178.4 24.0 293 111-473 1065-1384(1387)
164 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-19 3.6E-24 165.9 27.9 251 179-494 2-282 (300)
165 KOG0644 Uncharacterized conser 99.9 2.1E-21 4.6E-26 181.8 13.5 277 108-473 188-471 (1113)
166 KOG0650 WD40 repeat nucleolar 99.9 4.9E-20 1.1E-24 166.7 21.6 294 144-489 391-733 (733)
167 KOG0642 Cell-cycle nuclear pro 99.9 4.6E-21 9.9E-26 172.3 15.0 256 147-430 288-570 (577)
168 KOG1034 Transcriptional repres 99.9 2.2E-20 4.7E-25 157.0 16.6 246 121-421 104-383 (385)
169 KOG0290 Conserved WD40 repeat- 99.9 3.4E-19 7.5E-24 147.3 22.8 286 104-457 38-355 (364)
170 KOG1587 Cytoplasmic dynein int 99.8 5.7E-19 1.2E-23 167.0 25.8 278 132-472 222-518 (555)
171 KOG4227 WD40 repeat protein [G 99.8 2.3E-19 4.9E-24 154.4 20.8 287 144-468 47-385 (609)
172 KOG1538 Uncharacterized conser 99.8 1.7E-19 3.7E-24 165.3 20.8 272 112-470 14-293 (1081)
173 KOG0303 Actin-binding protein 99.8 1.1E-19 2.4E-24 156.4 17.8 218 199-474 74-298 (472)
174 KOG1007 WD repeat protein TSSC 99.8 3.2E-19 6.8E-24 147.4 19.3 254 104-422 57-362 (370)
175 KOG0303 Actin-binding protein 99.8 4.3E-19 9.3E-24 152.8 19.6 207 147-424 75-297 (472)
176 KOG1334 WD40 repeat protein [G 99.8 8.4E-20 1.8E-24 161.3 15.1 314 102-471 134-467 (559)
177 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-16 3.8E-21 153.7 38.0 344 105-492 60-443 (466)
178 KOG1524 WD40 repeat-containing 99.8 1.9E-18 4.2E-23 154.5 20.0 265 113-467 17-283 (737)
179 KOG1963 WD40 repeat protein [G 99.8 2.1E-17 4.5E-22 156.8 26.7 330 109-470 204-583 (792)
180 KOG4227 WD40 repeat protein [G 99.8 7E-18 1.5E-22 145.3 21.4 294 107-421 53-387 (609)
181 KOG0290 Conserved WD40 repeat- 99.8 5.4E-18 1.2E-22 140.3 19.8 246 107-417 93-361 (364)
182 KOG1188 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 141.6 21.7 196 223-429 41-250 (376)
183 KOG1310 WD40 repeat protein [G 99.8 4.8E-18 1E-22 152.4 20.2 226 102-343 42-313 (758)
184 KOG1963 WD40 repeat protein [G 99.8 6E-17 1.3E-21 153.7 28.5 328 113-471 163-539 (792)
185 KOG0642 Cell-cycle nuclear pro 99.8 6E-19 1.3E-23 158.9 14.2 250 105-379 289-566 (577)
186 KOG1240 Protein kinase contain 99.8 1.5E-17 3.2E-22 162.7 24.8 271 137-475 1034-1339(1431)
187 KOG2919 Guanine nucleotide-bin 99.8 1.5E-17 3.3E-22 139.8 19.3 231 209-495 52-331 (406)
188 COG2319 FOG: WD40 repeat [Gene 99.8 2.4E-15 5.3E-20 145.7 36.6 316 112-471 111-443 (466)
189 KOG0649 WD40 repeat protein [G 99.8 1E-16 2.2E-21 129.5 21.5 231 176-470 20-274 (325)
190 KOG0644 Uncharacterized conser 99.8 8.5E-19 1.8E-23 164.6 11.2 243 143-472 180-428 (1113)
191 KOG1310 WD40 repeat protein [G 99.8 7.5E-18 1.6E-22 151.2 15.6 260 144-477 41-310 (758)
192 KOG1538 Uncharacterized conser 99.8 2.2E-17 4.7E-22 151.7 18.2 251 155-491 14-293 (1081)
193 KOG2110 Uncharacterized conser 99.8 3.4E-16 7.4E-21 134.2 23.2 236 207-473 6-251 (391)
194 KOG1334 WD40 repeat protein [G 99.8 3.1E-17 6.6E-22 145.3 17.3 286 144-494 133-469 (559)
195 KOG1587 Cytoplasmic dynein int 99.8 1.5E-16 3.3E-21 150.7 23.3 267 94-422 225-517 (555)
196 KOG1523 Actin-related protein 99.8 1.9E-16 4.2E-21 133.1 20.5 261 106-418 6-275 (361)
197 KOG2110 Uncharacterized conser 99.7 1.3E-14 2.7E-19 124.7 30.3 219 177-422 16-249 (391)
198 PRK11028 6-phosphogluconolacto 99.7 5.8E-15 1.3E-19 137.0 29.8 283 125-472 5-306 (330)
199 KOG1240 Protein kinase contain 99.7 7.7E-16 1.7E-20 151.0 23.9 299 94-419 1032-1431(1431)
200 KOG1523 Actin-related protein 99.7 3.7E-16 8E-21 131.4 18.7 214 202-473 6-239 (361)
201 KOG1272 WD40-repeat-containing 99.7 5E-17 1.1E-21 143.1 12.5 289 111-493 130-423 (545)
202 KOG1524 WD40 repeat-containing 99.7 4.4E-16 9.5E-21 139.6 18.0 255 151-485 12-280 (737)
203 KOG1517 Guanine nucleotide bin 99.7 9.3E-16 2E-20 148.2 20.8 254 112-424 1111-1384(1387)
204 KOG0771 Prolactin regulatory e 99.7 4.6E-16 1E-20 135.8 15.4 203 210-473 148-357 (398)
205 KOG1009 Chromatin assembly com 99.7 2.3E-16 4.9E-21 136.8 12.9 214 206-457 13-249 (434)
206 KOG2321 WD40 repeat protein [G 99.7 5.9E-15 1.3E-19 133.6 22.1 285 109-468 50-341 (703)
207 KOG1445 Tumor-specific antigen 99.7 5.7E-16 1.2E-20 141.7 15.7 234 121-423 590-846 (1012)
208 KOG0322 G-protein beta subunit 99.7 7.7E-16 1.7E-20 126.0 14.8 252 110-420 56-322 (323)
209 PRK01742 tolB translocation pr 99.7 3.3E-15 7.2E-20 142.8 21.0 232 129-449 181-426 (429)
210 KOG2111 Uncharacterized conser 99.7 6.9E-14 1.5E-18 117.9 23.7 239 208-473 7-259 (346)
211 KOG3881 Uncharacterized conser 99.7 1.4E-14 3E-19 125.4 18.7 268 151-449 53-342 (412)
212 KOG0771 Prolactin regulatory e 99.7 3.2E-15 7E-20 130.6 14.9 202 114-375 148-355 (398)
213 KOG2111 Uncharacterized conser 99.6 8.5E-13 1.8E-17 111.4 27.2 231 113-423 8-258 (346)
214 KOG2139 WD40 repeat protein [G 99.6 2.7E-13 5.8E-18 116.3 24.6 284 113-471 101-432 (445)
215 KOG2394 WD40 protein DMR-N9 [G 99.6 1.6E-14 3.6E-19 129.8 16.8 197 220-448 183-384 (636)
216 KOG1409 Uncharacterized conser 99.6 1.4E-13 3E-18 117.2 21.1 249 143-422 14-271 (404)
217 PF02239 Cytochrom_D1: Cytochr 99.6 2.2E-12 4.9E-17 119.3 30.6 313 121-474 5-351 (369)
218 PRK11028 6-phosphogluconolacto 99.6 9.9E-13 2.1E-17 122.1 27.6 255 109-421 33-304 (330)
219 KOG1354 Serine/threonine prote 99.6 1.6E-13 3.5E-18 116.8 19.5 315 111-467 26-431 (433)
220 KOG2315 Predicted translation 99.6 1.1E-12 2.3E-17 119.2 25.8 312 112-471 36-391 (566)
221 KOG4497 Uncharacterized conser 99.6 2.4E-13 5.2E-18 115.1 20.1 311 115-471 13-392 (447)
222 PRK01742 tolB translocation pr 99.6 2.1E-13 4.5E-18 130.5 21.2 208 187-469 183-400 (429)
223 PRK05137 tolB translocation pr 99.5 6.3E-12 1.4E-16 120.8 26.6 232 188-489 182-431 (435)
224 KOG1272 WD40-repeat-containing 99.5 3.9E-14 8.4E-19 125.2 10.1 217 177-468 140-360 (545)
225 KOG4497 Uncharacterized conser 99.5 6.8E-12 1.5E-16 106.5 22.7 307 113-459 51-423 (447)
226 KOG2394 WD40 protein DMR-N9 [G 99.5 3.8E-13 8.3E-18 121.2 15.0 197 120-402 183-384 (636)
227 PF02239 Cytochrom_D1: Cytochr 99.5 9.4E-12 2E-16 115.2 24.1 284 114-430 40-356 (369)
228 KOG3881 Uncharacterized conser 99.5 4.7E-12 1E-16 109.9 20.0 251 205-473 54-323 (412)
229 PRK04922 tolB translocation pr 99.5 7.9E-12 1.7E-16 120.0 24.0 218 188-475 184-416 (433)
230 PRK03629 tolB translocation pr 99.5 1.5E-11 3.3E-16 117.4 25.7 232 131-448 178-427 (429)
231 KOG1409 Uncharacterized conser 99.5 3.4E-12 7.3E-17 109.0 18.6 166 109-292 23-230 (404)
232 KOG0280 Uncharacterized conser 99.5 1.4E-11 3E-16 103.0 21.2 270 132-471 46-334 (339)
233 PF12937 F-box-like: F-box-lik 99.5 3E-14 6.5E-19 88.8 4.1 47 20-66 1-47 (47)
234 KOG1354 Serine/threonine prote 99.5 4.5E-12 9.7E-17 108.2 17.7 268 206-494 25-362 (433)
235 PRK04922 tolB translocation pr 99.5 2E-11 4.4E-16 117.2 24.4 232 131-448 183-432 (433)
236 PRK03629 tolB translocation pr 99.5 7.2E-11 1.6E-15 112.8 26.9 218 189-477 180-413 (429)
237 PRK02889 tolB translocation pr 99.4 2.8E-11 6E-16 115.8 23.5 235 131-449 175-425 (427)
238 KOG2139 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 105.4 19.3 210 206-474 98-313 (445)
239 KOG2321 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 111.7 19.9 246 204-474 49-306 (703)
240 PRK02889 tolB translocation pr 99.4 4.4E-11 9.5E-16 114.4 23.6 232 188-490 176-424 (427)
241 KOG1912 WD40 repeat protein [G 99.4 1.1E-09 2.3E-14 103.7 31.0 253 113-375 18-305 (1062)
242 PRK05137 tolB translocation pr 99.4 1.6E-10 3.4E-15 111.3 25.3 231 131-448 181-432 (435)
243 KOG0280 Uncharacterized conser 99.4 2.9E-11 6.3E-16 101.2 17.0 234 124-424 87-336 (339)
244 KOG0974 WD-repeat protein WDR6 99.4 2.3E-11 4.9E-16 118.5 18.2 147 118-292 141-291 (967)
245 COG5354 Uncharacterized protei 99.4 8.9E-10 1.9E-14 99.4 24.9 317 109-472 31-397 (561)
246 KOG2314 Translation initiation 99.4 1.1E-09 2.3E-14 99.8 25.3 315 113-470 213-573 (698)
247 PF08662 eIF2A: Eukaryotic tra 99.3 7.4E-11 1.6E-15 99.0 16.6 110 345-470 59-179 (194)
248 KOG0974 WD-repeat protein WDR6 99.3 5.8E-11 1.2E-15 115.8 17.6 189 119-376 96-290 (967)
249 TIGR02800 propeller_TolB tol-p 99.3 7.7E-10 1.7E-14 106.6 25.2 213 188-470 170-397 (417)
250 KOG1064 RAVE (regulator of V-A 99.3 1.8E-11 3.9E-16 125.2 12.9 188 113-379 2211-2403(2439)
251 PF08662 eIF2A: Eukaryotic tra 99.3 2E-10 4.3E-15 96.5 17.0 148 115-290 10-180 (194)
252 TIGR03300 assembly_YfgL outer 99.3 1.1E-08 2.3E-13 97.1 29.1 296 122-467 65-376 (377)
253 KOG4190 Uncharacterized conser 99.3 2.7E-11 5.9E-16 109.9 10.2 287 146-466 728-1032(1034)
254 KOG1064 RAVE (regulator of V-A 99.3 7.9E-11 1.7E-15 120.7 14.1 197 150-431 2205-2408(2439)
255 PRK00178 tolB translocation pr 99.3 6.7E-09 1.5E-13 100.2 26.8 215 189-474 180-410 (430)
256 KOG2041 WD40 repeat protein [G 99.2 1.1E-09 2.3E-14 102.8 19.9 287 113-473 17-340 (1189)
257 COG5170 CDC55 Serine/threonine 99.2 2.4E-10 5.1E-15 96.6 13.9 249 206-477 26-316 (460)
258 COG5170 CDC55 Serine/threonine 99.2 3.8E-10 8.2E-15 95.4 14.7 258 112-421 28-367 (460)
259 PRK04792 tolB translocation pr 99.2 7.7E-09 1.7E-13 99.4 26.0 213 189-472 199-427 (448)
260 PF10282 Lactonase: Lactonase, 99.2 3.8E-08 8.3E-13 91.5 29.8 270 188-473 13-325 (345)
261 PF10282 Lactonase: Lactonase, 99.2 5.5E-08 1.2E-12 90.4 30.5 276 132-427 13-330 (345)
262 PRK04792 tolB translocation pr 99.2 7.8E-09 1.7E-13 99.3 24.9 231 132-448 198-446 (448)
263 KOG4190 Uncharacterized conser 99.2 8.4E-11 1.8E-15 106.8 10.6 218 199-429 728-956 (1034)
264 TIGR02800 propeller_TolB tol-p 99.2 4.8E-09 1E-13 101.1 23.6 218 131-429 169-404 (417)
265 KOG4547 WD40 repeat-containing 99.2 7.1E-09 1.5E-13 95.5 22.2 188 177-376 4-222 (541)
266 PRK00178 tolB translocation pr 99.2 1E-08 2.3E-13 98.8 24.6 230 133-448 180-427 (430)
267 KOG4547 WD40 repeat-containing 99.2 1.5E-09 3.2E-14 99.9 17.1 189 269-471 3-221 (541)
268 KOG0309 Conserved WD40 repeat- 99.2 5.4E-10 1.2E-14 105.1 13.7 204 154-423 25-234 (1081)
269 PLN02919 haloacid dehalogenase 99.2 4.4E-08 9.5E-13 103.0 29.2 255 177-474 579-892 (1057)
270 PRK01029 tolB translocation pr 99.2 2.8E-08 6.2E-13 94.7 25.2 238 189-490 166-424 (428)
271 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.3E-07 5.1E-12 84.1 29.0 260 188-474 27-334 (352)
272 KOG4532 WD40-like repeat conta 99.1 1.7E-08 3.6E-13 83.9 19.4 201 221-477 83-289 (344)
273 KOG3914 WD repeat protein WDR4 99.1 1.6E-09 3.4E-14 95.1 14.2 85 340-430 146-232 (390)
274 KOG0309 Conserved WD40 repeat- 99.1 1.2E-09 2.7E-14 102.7 13.8 286 109-471 23-340 (1081)
275 KOG3914 WD repeat protein WDR4 99.1 1.6E-09 3.5E-14 95.0 13.5 159 113-295 65-229 (390)
276 TIGR03300 assembly_YfgL outer 99.1 1.5E-07 3.2E-12 89.3 26.2 265 177-474 64-342 (377)
277 PLN02919 haloacid dehalogenase 99.1 1.5E-07 3.4E-12 99.0 28.2 271 113-425 570-892 (1057)
278 PF00646 F-box: F-box domain; 99.1 1.6E-10 3.4E-15 72.6 3.8 47 19-65 2-48 (48)
279 KOG4714 Nucleoporin [Nuclear s 99.1 7.3E-09 1.6E-13 85.6 14.0 162 106-290 85-255 (319)
280 KOG4532 WD40-like repeat conta 99.0 4.6E-08 1E-12 81.3 18.3 235 120-376 82-333 (344)
281 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.6E-06 3.5E-11 78.7 29.5 260 132-429 27-338 (352)
282 PRK01029 tolB translocation pr 99.0 1.9E-07 4.2E-12 89.1 24.8 242 132-450 165-426 (428)
283 KOG1912 WD40 repeat protein [G 99.0 1.7E-07 3.7E-12 89.3 23.5 327 121-471 78-552 (1062)
284 PF04762 IKI3: IKI3 family; I 99.0 9.1E-07 2E-11 91.5 30.2 328 113-472 24-458 (928)
285 PF15492 Nbas_N: Neuroblastoma 99.0 4.8E-07 1E-11 76.6 22.8 233 115-379 2-264 (282)
286 KOG2315 Predicted translation 99.0 2E-07 4.4E-12 85.6 21.9 280 112-429 75-397 (566)
287 PF04762 IKI3: IKI3 family; I 99.0 1.4E-06 2.9E-11 90.3 30.4 319 110-470 209-564 (928)
288 COG4946 Uncharacterized protei 99.0 1.1E-06 2.3E-11 79.3 25.3 138 151-318 357-500 (668)
289 COG5354 Uncharacterized protei 99.0 8.2E-07 1.8E-11 80.7 24.7 275 149-470 28-348 (561)
290 KOG4714 Nucleoporin [Nuclear s 99.0 2.8E-08 6.2E-13 82.2 14.1 199 209-422 39-255 (319)
291 smart00256 FBOX A Receptor for 98.9 8.9E-10 1.9E-14 66.7 3.7 40 23-62 1-40 (41)
292 COG2706 3-carboxymuconate cycl 98.9 8.3E-06 1.8E-10 71.5 28.4 281 187-477 15-328 (346)
293 KOG0882 Cyclophilin-related pe 98.9 6.5E-08 1.4E-12 86.2 15.5 270 151-491 7-325 (558)
294 COG2706 3-carboxymuconate cycl 98.9 1.4E-05 3E-10 70.1 29.3 270 131-425 15-327 (346)
295 KOG2041 WD40 repeat protein [G 98.9 8E-08 1.7E-12 90.6 16.3 232 154-459 15-279 (1189)
296 KOG3621 WD40 repeat-containing 98.9 1.9E-07 4.1E-12 88.3 17.7 295 177-489 44-372 (726)
297 KOG2314 Translation initiation 98.9 9.9E-06 2.2E-10 74.7 27.5 269 156-470 213-525 (698)
298 KOG2695 WD40 repeat protein [G 98.8 1.8E-08 3.8E-13 86.7 9.0 170 226-448 228-402 (425)
299 KOG4649 PQQ (pyrrolo-quinoline 98.8 2.4E-05 5.2E-10 65.4 26.4 146 119-291 20-167 (354)
300 KOG2695 WD40 repeat protein [G 98.8 2.2E-08 4.7E-13 86.2 8.7 150 182-379 228-381 (425)
301 KOG2066 Vacuolar assembly/sort 98.8 3.1E-07 6.7E-12 88.1 17.1 190 153-421 39-233 (846)
302 KOG1832 HIV-1 Vpr-binding prot 98.8 9.7E-09 2.1E-13 98.9 7.1 202 143-379 1091-1296(1516)
303 KOG0882 Cyclophilin-related pe 98.8 1.7E-07 3.6E-12 83.7 14.1 269 109-429 8-313 (558)
304 PF08450 SGL: SMP-30/Gluconola 98.8 9.5E-06 2.1E-10 71.8 25.0 217 177-457 11-244 (246)
305 PRK11138 outer membrane biogen 98.8 1.1E-05 2.4E-10 76.8 27.2 257 177-469 119-393 (394)
306 COG4946 Uncharacterized protei 98.8 9.1E-05 2E-09 67.3 30.0 193 270-477 277-484 (668)
307 KOG1832 HIV-1 Vpr-binding prot 98.7 1.5E-08 3.2E-13 97.7 6.0 196 196-473 1091-1294(1516)
308 PF15492 Nbas_N: Neuroblastoma 98.7 1.4E-05 3.1E-10 67.9 23.0 205 177-432 8-270 (282)
309 PF13360 PQQ_2: PQQ-like domai 98.7 4.5E-06 9.8E-11 73.6 21.4 216 187-426 2-235 (238)
310 PF00400 WD40: WD domain, G-be 98.7 2.9E-08 6.3E-13 59.1 5.0 38 144-194 2-39 (39)
311 PRK04043 tolB translocation pr 98.7 2.1E-05 4.5E-10 74.8 26.3 214 189-475 170-405 (419)
312 KOG1645 RING-finger-containing 98.7 3.1E-06 6.8E-11 74.8 17.6 255 134-422 175-462 (463)
313 PRK11138 outer membrane biogen 98.6 2.9E-05 6.3E-10 74.0 25.8 262 178-473 69-356 (394)
314 PF00400 WD40: WD domain, G-be 98.6 1.2E-07 2.6E-12 56.5 5.8 39 196-238 1-39 (39)
315 KOG1275 PAB-dependent poly(A) 98.6 1E-06 2.2E-11 85.7 14.8 181 221-468 146-340 (1118)
316 PF08450 SGL: SMP-30/Gluconola 98.6 8.8E-05 1.9E-09 65.7 25.8 220 114-409 3-244 (246)
317 KOG1645 RING-finger-containing 98.6 6.4E-06 1.4E-10 72.9 17.7 254 190-471 175-462 (463)
318 KOG1275 PAB-dependent poly(A) 98.6 1.3E-06 2.7E-11 85.1 13.9 190 177-419 146-340 (1118)
319 PF13360 PQQ_2: PQQ-like domai 98.5 3.1E-05 6.7E-10 68.3 20.8 211 231-474 2-234 (238)
320 KOG2114 Vacuolar assembly/sort 98.5 2.7E-05 5.9E-10 75.8 20.4 195 177-377 34-246 (933)
321 KOG2066 Vacuolar assembly/sort 98.5 1.4E-05 3E-10 77.2 18.2 188 113-334 42-234 (846)
322 PF07433 DUF1513: Protein of u 98.5 0.00028 6.1E-09 62.1 24.7 236 177-457 16-275 (305)
323 KOG2114 Vacuolar assembly/sort 98.3 0.00014 3.1E-09 71.0 20.7 205 117-348 30-259 (933)
324 KOG2997 F-box protein FBX9 [Ge 98.3 1.9E-06 4.1E-11 74.0 6.9 57 15-71 102-163 (366)
325 KOG1920 IkappaB kinase complex 98.3 0.0002 4.3E-09 72.8 21.6 244 206-471 68-323 (1265)
326 KOG3621 WD40 repeat-containing 98.3 0.00012 2.6E-09 70.0 18.9 156 113-291 36-199 (726)
327 KOG2120 SCF ubiquitin ligase, 98.3 4.3E-07 9.2E-12 77.5 2.2 47 18-64 96-142 (419)
328 PRK04043 tolB translocation pr 98.2 0.0013 2.7E-08 62.8 25.0 209 131-375 168-401 (419)
329 KOG1008 Uncharacterized conser 98.2 3.3E-06 7.2E-11 79.2 6.5 203 153-421 56-275 (783)
330 KOG1920 IkappaB kinase complex 98.2 0.0016 3.5E-08 66.5 24.9 235 154-424 69-325 (1265)
331 KOG1008 Uncharacterized conser 98.1 2.2E-06 4.7E-11 80.4 4.3 210 206-471 56-276 (783)
332 KOG1897 Damage-specific DNA bi 98.1 0.014 3E-07 58.8 32.0 331 113-473 490-901 (1096)
333 PF07433 DUF1513: Protein of u 98.1 0.0024 5.2E-08 56.4 21.2 203 263-473 9-250 (305)
334 PF08596 Lgl_C: Lethal giant l 98.1 0.00072 1.6E-08 63.3 19.2 249 208-469 3-337 (395)
335 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0055 1.2E-07 51.7 22.3 104 121-242 62-167 (354)
336 PRK02888 nitrous-oxide reducta 98.0 0.0013 2.7E-08 63.8 21.0 133 324-458 295-451 (635)
337 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0037 8.1E-08 58.4 23.3 100 114-215 5-117 (415)
338 PF00780 CNH: CNH domain; Int 98.0 0.0069 1.5E-07 54.6 25.0 235 177-430 6-264 (275)
339 PF04841 Vps16_N: Vps16, N-ter 98.0 0.006 1.3E-07 58.1 25.3 210 189-419 62-285 (410)
340 cd00216 PQQ_DH Dehydrogenases 98.0 0.012 2.5E-07 57.8 27.3 273 125-431 64-434 (488)
341 PF11768 DUF3312: Protein of u 98.0 0.017 3.6E-07 55.0 27.6 72 343-422 257-330 (545)
342 cd00216 PQQ_DH Dehydrogenases 98.0 0.0074 1.6E-07 59.2 25.4 272 178-474 61-428 (488)
343 PF11768 DUF3312: Protein of u 97.9 7.8E-05 1.7E-09 70.1 9.9 76 151-243 257-332 (545)
344 PF06977 SdiA-regulated: SdiA- 97.9 0.013 2.8E-07 51.0 22.4 207 147-371 15-247 (248)
345 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0011 2.4E-08 48.5 12.6 104 113-235 2-109 (111)
346 KOG3617 WD40 and TPR repeat-co 97.8 0.0017 3.7E-08 63.7 17.4 109 113-241 18-132 (1416)
347 COG3386 Gluconolactonase [Carb 97.8 0.0097 2.1E-07 53.7 21.3 221 220-458 34-275 (307)
348 PF04053 Coatomer_WDAD: Coatom 97.8 0.0048 1E-07 58.8 19.8 226 206-470 32-262 (443)
349 PF06433 Me-amine-dh_H: Methyl 97.8 0.0068 1.5E-07 54.3 19.2 260 132-430 17-329 (342)
350 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0018 3.8E-08 47.5 12.7 105 156-284 2-109 (111)
351 PF06433 Me-amine-dh_H: Methyl 97.7 0.019 4.1E-07 51.5 21.5 243 113-379 38-325 (342)
352 PF08596 Lgl_C: Lethal giant l 97.7 0.007 1.5E-07 56.9 19.9 244 112-371 3-332 (395)
353 PF06977 SdiA-regulated: SdiA- 97.7 0.019 4.1E-07 50.0 20.7 219 200-467 15-247 (248)
354 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.022 4.7E-07 53.4 22.8 294 119-458 1-347 (353)
355 PF03178 CPSF_A: CPSF A subuni 97.7 0.005 1.1E-07 56.9 18.3 178 233-421 3-202 (321)
356 PF08553 VID27: VID27 cytoplas 97.6 0.0095 2.1E-07 60.2 20.1 136 325-469 504-646 (794)
357 KOG3617 WD40 and TPR repeat-co 97.6 0.003 6.6E-08 62.1 15.8 101 177-289 26-131 (1416)
358 PF08553 VID27: VID27 cytoplas 97.5 0.0078 1.7E-07 60.8 18.0 210 111-374 431-647 (794)
359 PF00780 CNH: CNH domain; Int 97.4 0.081 1.8E-06 47.7 23.3 234 118-379 3-260 (275)
360 smart00320 WD40 WD40 repeats. 97.4 0.00024 5.2E-09 41.4 4.1 38 144-194 3-40 (40)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.15 3.4E-06 50.3 27.7 187 178-379 69-338 (527)
362 KOG2395 Protein involved in va 97.3 0.014 3E-07 54.6 15.6 131 326-469 357-499 (644)
363 KOG3926 F-box proteins [Amino 97.3 0.00043 9.3E-09 58.2 5.5 58 12-69 194-252 (332)
364 KOG4640 Anaphase-promoting com 97.3 0.0012 2.5E-08 62.7 8.3 91 392-490 20-115 (665)
365 PF04053 Coatomer_WDAD: Coatom 97.3 0.065 1.4E-06 51.2 20.2 227 105-374 27-262 (443)
366 PF14583 Pectate_lyase22: Olig 97.3 0.15 3.2E-06 47.0 25.6 278 117-471 42-382 (386)
367 smart00320 WD40 WD40 repeats. 97.3 0.00068 1.5E-08 39.3 4.7 38 197-238 3-40 (40)
368 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.24 5.3E-06 49.0 28.0 28 404-431 473-500 (527)
369 COG0823 TolB Periplasmic compo 97.2 0.044 9.5E-07 52.2 18.6 181 258-458 192-389 (425)
370 KOG4441 Proteins containing BT 97.2 0.092 2E-06 52.3 21.3 146 119-292 282-455 (571)
371 PF04841 Vps16_N: Vps16, N-ter 97.2 0.13 2.9E-06 49.0 21.3 193 233-451 62-272 (410)
372 KOG4640 Anaphase-promoting com 97.1 0.0022 4.7E-08 60.9 8.6 93 153-267 20-114 (665)
373 KOG2079 Vacuolar assembly/sort 97.1 0.0052 1.1E-07 62.2 11.5 112 113-240 90-203 (1206)
374 KOG2079 Vacuolar assembly/sort 97.1 0.017 3.6E-07 58.8 14.7 101 177-289 98-203 (1206)
375 KOG4341 F-box protein containi 97.0 0.00029 6.3E-09 63.7 1.7 47 21-67 73-119 (483)
376 KOG4441 Proteins containing BT 97.0 0.25 5.4E-06 49.3 22.1 228 221-471 284-547 (571)
377 KOG2444 WD40 repeat protein [G 96.9 0.0032 7E-08 52.2 6.7 104 178-291 70-179 (238)
378 PHA02713 hypothetical protein; 96.9 0.23 5E-06 49.6 21.0 190 221-426 303-538 (557)
379 PHA02713 hypothetical protein; 96.8 0.34 7.4E-06 48.4 21.2 190 270-477 303-540 (557)
380 PRK02888 nitrous-oxide reducta 96.8 0.092 2E-06 51.4 16.4 138 220-365 286-451 (635)
381 KOG1897 Damage-specific DNA bi 96.6 0.99 2.1E-05 46.3 30.9 293 160-471 299-614 (1096)
382 KOG2444 WD40 repeat protein [G 96.6 0.0078 1.7E-07 50.0 7.0 105 122-242 70-179 (238)
383 PF05096 Glu_cyclase_2: Glutam 96.6 0.46 1E-05 41.4 21.8 182 209-409 47-249 (264)
384 COG3391 Uncharacterized conser 96.5 0.74 1.6E-05 43.6 22.1 201 261-473 76-286 (381)
385 PF03178 CPSF_A: CPSF A subuni 96.4 0.21 4.5E-06 46.2 15.9 135 325-471 62-203 (321)
386 PF06881 Elongin_A: RNA polyme 96.4 0.013 2.9E-07 43.8 6.5 72 18-91 2-74 (109)
387 KOG2395 Protein involved in va 96.4 0.054 1.2E-06 50.8 11.5 147 122-289 346-500 (644)
388 KOG1916 Nuclear protein, conta 96.4 0.00067 1.4E-08 66.9 -0.8 290 131-476 110-429 (1283)
389 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.91 2E-05 42.6 22.2 261 176-472 2-315 (353)
390 PF02897 Peptidase_S9_N: Proly 96.3 1.2 2.5E-05 43.0 25.8 241 114-377 127-407 (414)
391 COG3386 Gluconolactonase [Carb 96.2 0.74 1.6E-05 41.8 17.8 189 266-470 32-243 (307)
392 PF12894 Apc4_WD40: Anaphase-p 96.2 0.016 3.5E-07 35.3 4.9 34 392-426 11-45 (47)
393 PHA03098 kelch-like protein; P 96.1 0.7 1.5E-05 46.3 18.8 186 221-424 294-514 (534)
394 KOG4499 Ca2+-binding protein R 96.1 0.76 1.6E-05 38.8 15.4 95 348-448 160-263 (310)
395 PF15390 DUF4613: Domain of un 95.8 1.8 3.8E-05 42.0 18.6 162 152-376 18-188 (671)
396 COG0823 TolB Periplasmic compo 95.8 1.7 3.6E-05 41.7 18.9 166 196-377 182-361 (425)
397 KOG2280 Vacuolar assembly/sort 95.7 2.6 5.6E-05 42.1 19.9 180 187-379 63-251 (829)
398 PHA03098 kelch-like protein; P 95.6 1.3 2.7E-05 44.5 18.6 144 221-377 342-514 (534)
399 PF13013 F-box-like_2: F-box-l 95.6 0.017 3.6E-07 42.6 3.8 33 19-51 21-53 (109)
400 PF05694 SBP56: 56kDa selenium 95.5 0.66 1.4E-05 43.4 14.3 202 270-478 86-350 (461)
401 COG3391 Uncharacterized conser 95.5 2.3 5.1E-05 40.3 25.0 190 177-379 84-288 (381)
402 PF12894 Apc4_WD40: Anaphase-p 95.4 0.047 1E-06 33.3 4.6 29 153-194 11-39 (47)
403 PF05694 SBP56: 56kDa selenium 95.3 2.6 5.7E-05 39.6 19.1 233 221-458 86-393 (461)
404 KOG4499 Ca2+-binding protein R 95.2 1.6 3.5E-05 36.9 17.1 107 262-409 161-273 (310)
405 COG3490 Uncharacterized protei 95.1 2.1 4.6E-05 37.4 19.4 205 220-468 123-346 (366)
406 COG3490 Uncharacterized protei 95.1 1.5 3.3E-05 38.3 14.0 154 117-295 120-316 (366)
407 COG5276 Uncharacterized conser 95.1 2.2 4.8E-05 37.5 24.6 207 205-478 85-293 (370)
408 KOG1916 Nuclear protein, conta 94.8 0.0079 1.7E-07 59.8 0.1 173 113-289 186-374 (1283)
409 PF14583 Pectate_lyase22: Olig 94.8 3.5 7.5E-05 38.3 18.1 245 195-459 19-303 (386)
410 PF05096 Glu_cyclase_2: Glutam 94.8 2.6 5.7E-05 36.9 22.3 186 259-457 45-249 (264)
411 PRK13616 lipoprotein LpqB; Pro 94.6 3.3 7.1E-05 41.7 17.5 151 112-288 351-524 (591)
412 PF14870 PSII_BNR: Photosynthe 94.6 3.4 7.4E-05 37.4 23.7 179 184-418 120-301 (302)
413 COG3823 Glutamine cyclotransfe 94.5 1.8 3.9E-05 35.9 12.6 174 220-409 54-247 (262)
414 PHA02790 Kelch-like protein; P 94.5 4.8 0.0001 39.6 18.3 183 221-423 271-472 (480)
415 PF08728 CRT10: CRT10; InterP 94.4 2.9 6.2E-05 42.3 16.4 149 316-469 49-245 (717)
416 PHA02790 Kelch-like protein; P 94.4 4.7 0.0001 39.7 18.1 142 221-376 318-472 (480)
417 PF02897 Peptidase_S9_N: Proly 94.4 5.1 0.00011 38.6 26.0 231 177-425 134-408 (414)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 94.1 5.5 0.00012 37.8 26.3 84 392-477 307-405 (415)
419 PF10313 DUF2415: Uncharacteri 94.1 0.2 4.4E-06 29.6 4.7 33 259-291 1-35 (43)
420 PF12234 Rav1p_C: RAVE protein 94.0 1.2 2.5E-05 44.5 12.7 114 109-240 28-156 (631)
421 TIGR03074 PQQ_membr_DH membran 93.6 10 0.00023 39.4 20.9 195 178-379 194-482 (764)
422 PLN03215 ascorbic acid mannose 93.2 0.078 1.7E-06 48.8 3.2 35 21-55 5-40 (373)
423 COG4590 ABC-type uncharacteriz 93.1 1.3 2.8E-05 41.3 10.5 156 311-476 227-392 (733)
424 PRK13616 lipoprotein LpqB; Pro 93.0 11 0.00024 38.0 22.1 183 187-420 328-524 (591)
425 COG5167 VID27 Protein involved 93.0 3.1 6.6E-05 39.6 12.9 137 326-473 491-635 (776)
426 PF12234 Rav1p_C: RAVE protein 92.9 1.8 3.9E-05 43.2 12.0 115 346-472 30-158 (631)
427 PF07995 GSDH: Glucose / Sorbo 92.7 8.3 0.00018 35.8 25.0 77 385-465 246-330 (331)
428 PF05935 Arylsulfotrans: Aryls 92.7 9.6 0.00021 37.4 16.9 154 120-294 113-306 (477)
429 TIGR03074 PQQ_membr_DH membran 92.7 14 0.00031 38.4 22.0 153 271-429 260-485 (764)
430 PF14761 HPS3_N: Hermansky-Pud 92.5 4.9 0.00011 33.9 12.3 111 308-423 19-165 (215)
431 PF14727 PHTB1_N: PTHB1 N-term 92.0 12 0.00025 35.8 26.7 149 121-288 36-203 (418)
432 TIGR03548 mutarot_permut cycli 91.8 11 0.00023 34.9 21.8 107 270-377 72-197 (323)
433 KOG2377 Uncharacterized conser 91.6 12 0.00027 35.2 21.7 118 150-291 63-187 (657)
434 PF10433 MMS1_N: Mono-function 90.7 19 0.00041 35.8 22.3 261 118-402 218-503 (504)
435 KOG3630 Nuclear pore complex, 90.7 2.9 6.3E-05 43.9 10.9 140 109-268 99-253 (1405)
436 KOG3616 Selective LIM binding 90.7 20 0.00044 36.1 16.3 65 113-194 17-81 (1636)
437 KOG2280 Vacuolar assembly/sort 90.5 21 0.00046 36.1 19.5 56 129-200 61-117 (829)
438 KOG2377 Uncharacterized conser 90.5 12 0.00027 35.2 13.6 105 344-457 65-172 (657)
439 PF15390 DUF4613: Domain of un 90.3 19 0.00042 35.3 21.8 157 109-291 18-188 (671)
440 PF07569 Hira: TUP1-like enhan 90.1 1.7 3.7E-05 37.4 7.8 68 355-423 20-97 (219)
441 PF10313 DUF2415: Uncharacteri 90.0 1.3 2.9E-05 26.2 4.8 30 346-375 1-34 (43)
442 PF14727 PHTB1_N: PTHB1 N-term 89.1 21 0.00046 34.1 26.8 114 177-291 36-165 (418)
443 PF07569 Hira: TUP1-like enhan 89.1 2.9 6.3E-05 35.9 8.5 71 220-292 20-98 (219)
444 COG5167 VID27 Protein involved 89.1 10 0.00022 36.3 12.2 146 123-290 481-633 (776)
445 PF14781 BBS2_N: Ciliary BBSom 88.9 9.1 0.0002 29.5 11.5 117 115-242 3-127 (136)
446 KOG4408 Putative Mg2+ and Co2+ 88.8 0.062 1.3E-06 47.3 -1.9 50 19-68 7-56 (386)
447 PF08728 CRT10: CRT10; InterP 88.7 5 0.00011 40.7 10.7 117 109-239 99-245 (717)
448 PRK13684 Ycf48-like protein; P 88.7 20 0.00044 33.3 30.4 114 345-468 214-329 (334)
449 PF14761 HPS3_N: Hermansky-Pud 88.5 14 0.00031 31.2 13.0 106 179-292 29-166 (215)
450 COG3823 Glutamine cyclotransfe 88.4 14 0.0003 31.0 12.7 185 262-456 49-247 (262)
451 PF10168 Nup88: Nuclear pore c 88.3 13 0.00027 38.5 13.6 78 346-423 85-181 (717)
452 COG5276 Uncharacterized conser 88.1 18 0.0004 32.1 31.1 313 111-469 43-368 (370)
453 KOG1900 Nuclear pore complex, 88.1 23 0.0005 38.3 15.2 78 344-422 177-273 (1311)
454 KOG3630 Nuclear pore complex, 87.9 1.4 3.1E-05 45.9 6.6 117 346-470 101-228 (1405)
455 PF10647 Gmad1: Lipoprotein Lp 87.8 19 0.00041 31.9 18.4 147 112-280 25-186 (253)
456 PF14870 PSII_BNR: Photosynthe 87.6 22 0.00047 32.3 30.6 275 109-467 15-301 (302)
457 KOG1900 Nuclear pore complex, 87.4 9.6 0.00021 41.0 12.1 151 317-473 91-275 (1311)
458 PRK10115 protease 2; Provision 86.8 42 0.00092 34.8 27.9 109 113-240 129-255 (686)
459 PRK10115 protease 2; Provision 86.6 43 0.00094 34.8 27.2 240 208-473 128-397 (686)
460 PF07995 GSDH: Glucose / Sorbo 86.5 27 0.00059 32.4 22.5 50 113-163 4-58 (331)
461 KOG1983 Tomosyn and related SN 86.2 37 0.00081 36.8 16.1 25 401-425 243-268 (993)
462 TIGR03606 non_repeat_PQQ dehyd 86.2 28 0.00061 33.7 13.8 112 345-457 29-164 (454)
463 KOG4460 Nuclear pore complex, 85.9 31 0.00067 33.4 13.4 82 347-429 105-206 (741)
464 PF11715 Nup160: Nucleoporin N 85.3 8.5 0.00018 38.7 10.7 37 393-429 215-256 (547)
465 PF02333 Phytase: Phytase; In 84.8 35 0.00076 32.0 21.7 209 175-429 65-299 (381)
466 TIGR02604 Piru_Ver_Nterm putat 84.5 37 0.0008 32.1 15.8 20 347-366 185-204 (367)
467 TIGR02604 Piru_Ver_Nterm putat 84.5 32 0.00069 32.5 13.5 53 111-163 14-81 (367)
468 KOG3522 Predicted guanine nucl 84.0 23 0.00049 36.4 12.3 149 223-377 548-700 (925)
469 PF08801 Nucleoporin_N: Nup133 83.0 47 0.001 32.1 14.4 33 440-474 191-223 (422)
470 PF12657 TFIIIC_delta: Transcr 82.8 9.8 0.00021 31.3 8.3 29 394-422 87-122 (173)
471 COG3204 Uncharacterized protei 82.4 36 0.00078 30.4 18.0 162 109-291 84-265 (316)
472 smart00036 CNH Domain found in 82.4 39 0.00085 30.8 25.9 234 121-379 12-275 (302)
473 PF10168 Nup88: Nuclear pore c 82.2 58 0.0013 33.8 14.9 81 393-476 85-185 (717)
474 PF10214 Rrn6: RNA polymerase 82.1 73 0.0016 33.7 28.4 183 204-422 77-277 (765)
475 KOG3616 Selective LIM binding 82.1 33 0.00071 34.8 12.3 180 154-377 15-196 (1636)
476 COG3204 Uncharacterized protei 81.7 38 0.00083 30.2 20.5 205 202-456 81-301 (316)
477 PF07676 PD40: WD40-like Beta 81.4 5.1 0.00011 23.0 4.5 29 438-467 8-38 (39)
478 PF10395 Utp8: Utp8 family; I 80.9 68 0.0015 32.6 15.6 170 153-342 129-314 (670)
479 PF03022 MRJP: Major royal jel 80.5 44 0.00096 30.2 17.7 198 233-457 35-254 (287)
480 PF12768 Rax2: Cortical protei 80.1 45 0.00097 30.0 12.2 94 326-426 17-128 (281)
481 PF11715 Nup160: Nucleoporin N 79.5 8.4 0.00018 38.7 8.2 77 221-297 157-256 (547)
482 PF14781 BBS2_N: Ciliary BBSom 79.1 28 0.0006 27.0 12.5 106 177-291 9-127 (136)
483 PF11725 AvrE: Pathogenicity f 78.1 1.3E+02 0.0028 34.2 18.8 143 313-468 611-770 (1774)
484 PF09372 PRANC: PRANC domain; 78.1 2.2 4.8E-05 31.1 2.7 26 18-43 70-95 (97)
485 PRK13684 Ycf48-like protein; P 78.1 59 0.0013 30.2 23.2 70 346-420 260-330 (334)
486 PLN02153 epithiospecifier prot 78.0 60 0.0013 30.3 23.0 24 270-293 85-113 (341)
487 TIGR02608 delta_60_rpt delta-6 77.4 11 0.00024 24.0 5.2 46 441-486 3-51 (55)
488 PF07250 Glyoxal_oxid_N: Glyox 77.1 50 0.0011 28.9 11.0 143 326-473 47-200 (243)
489 PF10433 MMS1_N: Mono-function 75.3 91 0.002 31.0 22.4 252 177-448 221-503 (504)
490 PF09826 Beta_propel: Beta pro 74.8 95 0.0021 31.0 24.0 62 412-479 303-364 (521)
491 PF12768 Rax2: Cortical protei 73.7 69 0.0015 28.8 12.7 91 131-238 15-121 (281)
492 COG3292 Predicted periplasmic 73.3 1E+02 0.0022 30.6 21.0 312 109-468 163-489 (671)
493 PF10395 Utp8: Utp8 family; I 73.2 1.1E+02 0.0025 31.1 22.2 248 177-430 38-314 (670)
494 PF01731 Arylesterase: Arylest 73.2 14 0.00031 26.1 5.5 32 439-471 54-85 (86)
495 PRK14131 N-acetylneuraminic ac 72.4 90 0.0019 29.6 22.8 24 270-293 84-118 (376)
496 KOG1898 Splicing factor 3b, su 71.5 1.5E+02 0.0033 31.8 26.2 135 326-473 854-1007(1205)
497 PLN02153 epithiospecifier prot 71.4 89 0.0019 29.1 21.2 68 270-337 32-113 (341)
498 KOG2247 WD40 repeat-containing 71.4 1 2.2E-05 42.4 -0.6 103 177-292 45-150 (615)
499 COG4590 ABC-type uncharacteriz 70.2 47 0.001 31.6 9.4 169 144-377 211-389 (733)
500 TIGR03548 mutarot_permut cycli 70.1 91 0.002 28.7 19.6 65 356-424 123-197 (323)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-54 Score=363.64 Aligned_cols=329 Identities=19% Similarity=0.266 Sum_probs=279.9
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.+.+|..+|-|++|+|+|..+|+|+-|.++++||..+. .+..+.++|...|.|++|+| ||..||+|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsP-------------Dgk~iASG 175 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSP-------------DGKKIASG 175 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECC-------------Ccchhhcc
Confidence 34557778999999999999999999999999999994 89999999999999999999 89999999
Q ss_pred eCCCceEEec--CCce-eeeccCCCCceEEEEeeecC-CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784 185 SCDHSIRLWW--KGSC-QRCFKGHNGPVSTLSDKLLG-DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~-~~~~~~h~~~v~~l~~s~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 260 (501)
+.||+|++|| ++++ ...+.+|...|++++|.|.. .+..++|++++.||.|+|||+..+. ++..+.+|+.+
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~------~~~~lsgHT~~ 249 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT------CVRTLSGHTAS 249 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce------EEEEeccCccc
Confidence 9999999999 5554 47899999999999998733 5667799999999999999999876 58899999999
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc----cce-------------ecCCCc-e------------
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV----GMT-------------SVPGVP-V------------ 310 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----~~~-------------~~~~~~-~------------ 310 (501)
|+|++|- +..++++|+.|++|++|+...+...+...-- ... .+.+.. .
T Consensus 250 VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 250 VTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred eEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 9999996 5679999999999999999987654432210 000 000000 0
Q ss_pred ---eeecCCCeEEEEeCC-cEEEEEcCCC-ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784 311 ---DMKCHESMLYIASGS-SVVTIDLRTM-QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP 384 (501)
Q Consensus 311 ---~~~~~~~~~~~~~~~-~i~~~d~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 384 (501)
.....+..++.++++ ++.+|+.... +++..+.+|...|+.+.|+||++++++++-|+ |++||.++++.+
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l----- 402 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL----- 402 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-----
Confidence 001112234444443 8999987654 47788999999999999999999999999999 999999998876
Q ss_pred cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784 385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGL 463 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~ 463 (501)
.+|.+|-..|+.++|+.+ +++++||.|.++++|++++.++...+ .+|...|.++.|+|||..+++|+ .|..
T Consensus 403 -asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-----pGh~DEVf~vDwspDG~rV~sgg--kdkv 474 (480)
T KOG0271|consen 403 -ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-----PGHADEVFAVDWSPDGQRVASGG--KDKV 474 (480)
T ss_pred -hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC-----CCCCceEEEEEecCCCceeecCC--CceE
Confidence 999999999999999999 99999999999999999999999999 67889999999999999999999 5699
Q ss_pred EEEee
Q 010784 464 LQFRD 468 (501)
Q Consensus 464 i~~w~ 468 (501)
+++|.
T Consensus 475 ~~lw~ 479 (480)
T KOG0271|consen 475 LRLWR 479 (480)
T ss_pred EEeec
Confidence 99995
No 2
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8e-52 Score=346.44 Aligned_cols=375 Identities=21% Similarity=0.288 Sum_probs=302.5
Q ss_pred CCCccccccc----HHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhh---------------cCccc---
Q 010784 15 PSTTAIADLN----EDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQ---------------WPQVL--- 72 (501)
Q Consensus 15 ~~~~~~~~Lp----~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~---------------~~~~~--- 72 (501)
...+++..|| +++.+.||+|||+.+|+.|..|||.|+++..+..+||+++.+. |.+.+
T Consensus 70 LqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~ 149 (499)
T KOG0281|consen 70 LQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKN 149 (499)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccC
Confidence 3467888899 9999999999999999999999999999999999999988766 11111
Q ss_pred --cC-CCCC----cchhHHHHHHHHHHhhhccccCCeeeEEEe---cCCCCceEEeeCCcEEEeecCCeeeEEEEecccc
Q 010784 73 --VS-GSLP----TVRVREAYLARRIALLQFKFVDPLDVCFYS---VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE 142 (501)
Q Consensus 73 --~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~ 142 (501)
+. ++.. ..-+...+.....-..+|+.++-....+.. ..+.|.|+.++. ..+++|..|++|+|||..+
T Consensus 150 r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYClQYDD--~kiVSGlrDnTikiWD~n~- 226 (499)
T KOG0281|consen 150 RPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNS- 226 (499)
T ss_pred CCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEEEecc--hhhhcccccCceEEecccc-
Confidence 00 1111 111223333333445678888776654444 344588888875 5789999999999999998
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
..+.+.+.||++.|.|+.|. .+.+++|+.|.+|+||| +++++.++-+|...|..+.|+
T Consensus 227 ~~c~~~L~GHtGSVLCLqyd---------------~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~----- 286 (499)
T KOG0281|consen 227 LECLKILTGHTGSVLCLQYD---------------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS----- 286 (499)
T ss_pred HHHHHhhhcCCCcEEeeecc---------------ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-----
Confidence 58999999999999999995 57999999999999999 999999999999999999995
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
+.++++++.|.++.+||+.... ...+...+.+|...|+.+.|+ .+++++++.|.+|++|++.+++
T Consensus 287 -ng~mvtcSkDrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~e-------- 351 (499)
T KOG0281|consen 287 -NGYMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCE-------- 351 (499)
T ss_pred -CCEEEEecCCceeEEEeccCch---HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEecccee--------
Confidence 4699999999999999998754 244667789999999999995 4599999999999999998874
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
.++++.+|...|.|+.+ .++++++|+.|. |++||+..+.++
T Consensus 352 ------------------------------------fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 352 ------------------------------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred ------------------------------------eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 34567789999998877 789999999999 999999998776
Q ss_pred CCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccc----ccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLAN----SLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
..++||+.-|.++.|+..+++. |..||+|++||+.++...+ ++.......|++.|..+.| |...|++
T Consensus 394 ------RvLeGHEeLvRciRFd~krIVS-GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvs 464 (499)
T KOG0281|consen 394 ------RVLEGHEELVRCIRFDNKRIVS-GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIIS 464 (499)
T ss_pred ------HHHhchHHhhhheeecCceeee-ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEe
Confidence 9999999999999998766554 5699999999998764321 1111112567889999888 6778888
Q ss_pred eecCCCceEEEeeccCCccce
Q 010784 456 ASYGEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 456 ~~~d~~g~i~~w~~~~~~~~~ 476 (501)
++ +|.+|.+|||.++....
T Consensus 465 ss--HddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 465 SS--HDDTILIWDFLNGPPSA 483 (499)
T ss_pred cc--CCCeEEEEEcCCCCccc
Confidence 88 77999999998876543
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-48 Score=329.91 Aligned_cols=308 Identities=20% Similarity=0.301 Sum_probs=272.3
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
.++...+.||.++|.|++|+| +|..|+||+.|.++++|| +.....+.++|..-|.|++|+ |
T Consensus 105 trCssS~~GH~e~Vl~~~fsp-------------~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws----P 167 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSP-------------TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS----P 167 (480)
T ss_pred ceeccccCCCCCcEEEEEecC-------------CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEEC----C
Confidence 466678899999999999999 899999999999999999 888899999999999999997 8
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec----CCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH----KSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
||+.|++|+.||+|++||..++++ ....+.+|...|++++|.|- ...+|++++.||.|+|||+..++.+..
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~-----~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQ-----IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCc-----ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence 999999999999999999999986 77889999999999999873 456899999999999999998854332
Q ss_pred eecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeeeccCCCcEEEEEEc-----------CCC------
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTPAICKPILHSFSIM-----------PSK------ 357 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~-----------~~~------ 357 (501)
. ..+...+.++.+.+.+++.... .+|++|+...+.....+++|...|+.++++ |.+
T Consensus 243 l-----sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 243 L-----SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred e-----ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 2 1566678888888666555443 499999999999999999999999999887 222
Q ss_pred -------------------cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 358 -------------------SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 358 -------------------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
+.+++|++|. +.+|+-...+ +++..+.+|..-|+.+.|+|+ +++|++|.|..|+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 3599999999 9999987654 457889999999999999999 9999999999999
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc---------------------CCccc
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS---------------------NATCP 475 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~---------------------~~~~~ 475 (501)
+||-++|+.+.+| .+|...|..++|+.|.++|++|+ .|.++++|++. +++.+
T Consensus 393 LW~g~tGk~lasf-----RGHv~~VYqvawsaDsRLlVS~S--kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 393 LWDGRTGKFLASF-----RGHVAAVYQVAWSADSRLLVSGS--KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred eeeCCCcchhhhh-----hhccceeEEEEeccCccEEEEcC--CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 9999999999999 67889999999999999999999 66999999854 56677
Q ss_pred eeecCCCCceeeec
Q 010784 476 VLKHEVQNDSKFWG 489 (501)
Q Consensus 476 ~~s~~~d~~~~~w~ 489 (501)
+++|+.|..+++|.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 88999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-48 Score=334.60 Aligned_cols=282 Identities=23% Similarity=0.293 Sum_probs=261.0
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
.....|+..+.|+.++..+|||+-+|.++||+..+. ..+.+|.||.+.|.++.|+|.. ++..+|||+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~-----------~~~~lat~s~ 239 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVD-----------SDLNLATASA 239 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCC-----------Cccceeeecc
Confidence 446778999999999999999999999999999986 8899999999999999999941 3679999999
Q ss_pred CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
||++++|+ ....+..+.+|...|..++|+ |+|++|+|++.|.+-++||++++.. +....+|...|.++
T Consensus 240 Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH----PsG~~L~TasfD~tWRlWD~~tk~E------lL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 240 DGTVKLWKLSQETPLQDLEGHLARVSRVAFH----PSGKFLGTASFDSTWRLWDLETKSE------LLLQEGHSKGVFSI 309 (459)
T ss_pred CCceeeeccCCCcchhhhhcchhhheeeeec----CCCceeeecccccchhhcccccchh------hHhhccccccccee
Confidence 99999998 557889999999999999998 8999999999999999999999874 67778999999999
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 344 (501)
+|.+ +|.+++||+.|..-+|||++++ .++..+.+|
T Consensus 310 af~~-DGSL~~tGGlD~~~RvWDlRtg--------------------------------------------r~im~L~gH 344 (459)
T KOG0272|consen 310 AFQP-DGSLAATGGLDSLGRVWDLRTG--------------------------------------------RCIMFLAGH 344 (459)
T ss_pred EecC-CCceeeccCccchhheeecccC--------------------------------------------cEEEEeccc
Confidence 9998 8999999999999999999887 456678899
Q ss_pred CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784 345 KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~ 421 (501)
..+|.+|+|+|+|..+++|+.|+ ++|||++..+.+ .++.+|.+-|+.+.|+|. .+++++|.|++++||...
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ccceeeEeECCCceEEeecCCCCcEEEeeecccccc------eecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 99999999999999999999999 999999997654 899999999999999996 999999999999999999
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
++++++++ .+|.+.|.++.+++|+.+|++++.| .++++|.
T Consensus 419 ~~~~~ksL-----aGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSL-----AGHEGKVISLDISPDSQAIATSSFD--RTIKLWR 458 (459)
T ss_pred Ccccchhh-----cCCccceEEEEeccCCceEEEeccC--ceeeecc
Confidence 99999999 7888999999999999999999955 9999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.1e-42 Score=282.46 Aligned_cols=285 Identities=16% Similarity=0.245 Sum_probs=255.4
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
.+..+..|...|.++.|++|.+++++++.||.+.|||.-+. ...+.++-....|..++|+| .|+++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sP-------------Sg~~V 112 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSP-------------SGNFV 112 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECC-------------CCCeE
Confidence 34667778888999999999999999999999999999885 66677778889999999999 89999
Q ss_pred EEeeCCCceEEec-C-C------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 182 VTSSCDHSIRLWW-K-G------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 182 ~s~~~dg~i~vwd-~-~------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
|.|+.|+...||+ . . +..+.+.+|++-+.|..|. +...|++++.|.+..+||++++.+ ...
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-----dD~~ilT~SGD~TCalWDie~g~~------~~~ 181 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-----DDNHILTGSGDMTCALWDIETGQQ------TQV 181 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEc-----CCCceEecCCCceEEEEEcccceE------EEE
Confidence 9999999999997 2 2 3446789999999999994 578999999999999999999984 889
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
+.+|.+.|.++.++|.+++.+++|+-|+..++||++.+
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------------------------------------------ 219 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------------------------------------------ 219 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc------------------------------------------
Confidence 99999999999999988999999999999999999887
Q ss_pred CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEEe
Q 010784 334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTGG 409 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~g 409 (501)
..+++|.+|+..|+++.|.|+|.-+++|++|. .|+||++..+.+ ..+. .-..+|++++|+-. +++.+|
T Consensus 220 --~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~------a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 220 --QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL------AVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred --ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE------eeeccCcccCCceeEEEcccccEEEee
Confidence 34567889999999999999999999999999 999999997765 3333 23458999999999 999998
Q ss_pred cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 410 RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 410 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
..|.++.+||.-.++.+..+ .+|.+.|.++..+|||.-+++|+.| ..+++|.
T Consensus 292 y~d~~c~vWDtlk~e~vg~L-----~GHeNRvScl~~s~DG~av~TgSWD--s~lriW~ 343 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVL-----AGHENRVSCLGVSPDGMAVATGSWD--STLRIWA 343 (343)
T ss_pred ecCCceeEeeccccceEEEe-----eccCCeeEEEEECCCCcEEEecchh--HheeecC
Confidence 99999999999999999999 6889999999999999999999976 9999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.5e-44 Score=306.46 Aligned_cols=261 Identities=22% Similarity=0.338 Sum_probs=234.6
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
|-+.+|..+.|++ +++.|+||+.+|.++||+ ....+.+|.+|.+.|.++.|+|.. ++..++||
T Consensus 173 gd~rPis~~~fS~-------------ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~ 237 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-------------DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATA 237 (459)
T ss_pred cCCCcceeeEeec-------------CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC--Cccceeee
Confidence 4456777777777 899999999999999998 667889999999999999999521 46799999
Q ss_pred eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784 229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
+.||++++|++.+.. ++..+.+|...|..++|+| +|++|+|++.|.+-++||++++..+
T Consensus 238 s~Dgtvklw~~~~e~------~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El-------------- 296 (459)
T KOG0272|consen 238 SADGTVKLWKLSQET------PLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL-------------- 296 (459)
T ss_pred ccCCceeeeccCCCc------chhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh--------------
Confidence 999999999999865 5899999999999999998 8999999999999999999987542
Q ss_pred ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784 309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~ 387 (501)
....+|...|.+++|.+||.++++|+-|. -+|||++++.++ ..
T Consensus 297 ------------------------------L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i------m~ 340 (459)
T KOG0272|consen 297 ------------------------------LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI------MF 340 (459)
T ss_pred ------------------------------HhhcccccccceeEecCCCceeeccCccchhheeecccCcEE------EE
Confidence 33468999999999999999999999999 999999998765 89
Q ss_pred ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEE
Q 010784 388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQ 465 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~ 465 (501)
+.+|...|.+++|+|+ ..+|+||.|++++|||++..+.+.++ .+|.+-|+.++|+| .|.+|+++++| ++++
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-----pAH~nlVS~Vk~~p~~g~fL~TasyD--~t~k 413 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-----PAHSNLVSQVKYSPQEGYFLVTASYD--NTVK 413 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-----ccccchhhheEecccCCeEEEEcccC--ccee
Confidence 9999999999999999 99999999999999999999999998 67889999999998 78999999966 8899
Q ss_pred Eee---------------------ccCCccceeecCCCCceeeecc
Q 010784 466 FRD---------------------FSNATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 466 ~w~---------------------~~~~~~~~~s~~~d~~~~~w~~ 490 (501)
+|. ++.+...+++++.|+++|+|..
T Consensus 414 iWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 414 IWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred eecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 986 5567777889999999999963
No 7
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.5e-42 Score=326.14 Aligned_cols=374 Identities=20% Similarity=0.297 Sum_probs=309.4
Q ss_pred CCCCCCcccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCccccCCCC-----C---cchhH
Q 010784 12 SPSPSTTAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGSL-----P---TVRVR 83 (501)
Q Consensus 12 ~~~~~~~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~~-----~---~~~~~ 83 (501)
++..-.+++..||.|+..+||.||++++|+++++||+.|+.+++++..|.+.+++..+...+.... . ...|+
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 179 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK 179 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence 566668899999999999999999999999999999999999999999998888875544332221 0 13466
Q ss_pred HHHHHHHHHhhhccccCCee-eEEEe-cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEe
Q 010784 84 EAYLARRIALLQFKFVDPLD-VCFYS-VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRL 161 (501)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~ 161 (501)
..|.++......|....... ..+.. +...+.|..+. ..++++|+.+.++++|+..++..+...+.||.+.|.++++
T Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~ 257 (537)
T KOG0274|consen 180 SFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAF 257 (537)
T ss_pred hhhhhhhhccccccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEE
Confidence 67777766666776654333 22332 45558888888 6789999999999999999974444459999999999999
Q ss_pred eccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec
Q 010784 162 FPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL 239 (501)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~ 239 (501)
.. .++++++|+.|.+++||| ++.|...+.+|...|.++.. .+..+++|+.|.+|++|++
T Consensus 258 ~~-------------~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~------~~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 258 PS-------------GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI------DPFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred ec-------------CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc------cCceEeeccCCceEEEEec
Confidence 76 579999999999999999 99999999999999999985 5678899999999999999
Q ss_pred cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
.++. .+..+.+|.++|.++... +.++++|+.|++|++||+.++
T Consensus 319 ~n~~------~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~---------------------------- 361 (537)
T KOG0274|consen 319 TNGA------CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTG---------------------------- 361 (537)
T ss_pred cCcc------eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhc----------------------------
Confidence 9876 588888899999999985 569999999999999999866
Q ss_pred EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC-CCCCCCCCcccccCcccCeEE
Q 010784 320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS-QDAVKPQPMAELDGHVGSVTQ 397 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~h~~~v~~ 397 (501)
+.+.++.+|...|+++.+.+. ..+++|+.|+ |++||+++. ++ +.++.+|.+.+..
T Consensus 362 ----------------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c------~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 362 ----------------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC------IHTLQGHTSLVSS 418 (537)
T ss_pred ----------------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh------hhhhcCCcccccc
Confidence 455678899999999988655 8999999888 999999997 44 5999999999977
Q ss_pred EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784 398 LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 398 l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
+.+.. +++++++.|++|++||..++++++++... |...|..+++. ...+++++ .+|.+++||+.++...
T Consensus 419 l~~~~-~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~----~~~~v~~l~~~--~~~il~s~--~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 419 LLLRD-NFLVSSSADGTIKLWDAEEGECLRTLEGR----HVGGVSALALG--KEEILCSS--DDGSVKLWDLRSGTLI 487 (537)
T ss_pred ccccc-ceeEeccccccEEEeecccCceeeeeccC----CcccEEEeecC--cceEEEEe--cCCeeEEEecccCchh
Confidence 75544 46777789999999999999999999532 45677777775 46777777 6799999999887654
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-42 Score=278.11 Aligned_cols=290 Identities=19% Similarity=0.273 Sum_probs=245.2
Q ss_pred eeEEEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccc----cccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 103 DVCFYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSE----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
...+..|+.-|+.++..+. -..+++++.|..+.+|++... +.+.+.++||...|..+..++ +
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-------------d 74 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-------------D 74 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-------------C
Confidence 3456677778999999876 678889999999999997643 366889999999999999999 8
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
|+++++++.|+++++|| .++..+.|.+|...|.+++|+ ++...+++|+.|.+|++|+..... ..++.
T Consensus 75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s----~dn~qivSGSrDkTiklwnt~g~c-------k~t~~ 143 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS----TDNRQIVSGSRDKTIKLWNTLGVC-------KYTIH 143 (315)
T ss_pred CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec----CCCceeecCCCcceeeeeeecccE-------EEEEe
Confidence 99999999999999999 778899999999999999997 899999999999999999998764 34443
Q ss_pred C--CCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784 256 G--HEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 256 ~--~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (501)
. +.+.|.|++|+|+. ..+|++++.|++|++||+++.+.
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------------------------- 184 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--------------------------------------- 184 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------------------------------
Confidence 3 37899999999964 67999999999999999988643
Q ss_pred CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784 333 RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR 410 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs 410 (501)
...+.+|.+.++.+++||||.+.++|+.|+ +.+||++.++.+ ..+ +|...|.+++|+|+ ..++. .
T Consensus 185 -----~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l------ysl-~a~~~v~sl~fspnrywL~~-a 251 (315)
T KOG0279|consen 185 -----RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL------YSL-EAFDIVNSLCFSPNRYWLCA-A 251 (315)
T ss_pred -----hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee------Eec-cCCCeEeeEEecCCceeEee-c
Confidence 345678999999999999999999999999 999999998764 555 46889999999999 55555 4
Q ss_pred CCCcEEEEeCCCcccccccccCCC----CCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 411 DDLRINIWETDTGMLANSLLCNYP----EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 411 ~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
.+..|+|||++++.++..+..... ........+++|++||..|++|- .|+.|++|.+.
T Consensus 252 t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~--td~~irv~qv~ 313 (315)
T KOG0279|consen 252 TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY--TDNVIRVWQVA 313 (315)
T ss_pred cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee--cCCcEEEEEee
Confidence 777899999999999888754321 11123356789999999999998 66999999875
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6e-41 Score=268.69 Aligned_cols=281 Identities=20% Similarity=0.324 Sum_probs=243.1
Q ss_pred CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CC
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KG 196 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~ 196 (501)
+..+|+++++|.+|++|...+| .+.++++...+.|+.+...| ++..||+++. -.|++|| ..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTp-------------dk~~LAaa~~-qhvRlyD~~S~np 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITP-------------DKKDLAAAGN-QHVRLYDLNSNNP 73 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcC-------------CcchhhhccC-CeeEEEEccCCCC
Confidence 4578999999999999999996 89999988888999999999 8889998884 5799999 34
Q ss_pred ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784 197 SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT 276 (501)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s 276 (501)
..+.++.+|+..|+++.|. .+|+.+++|++||+++|||++... .+....|..+|+++..+| +...|++
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~----~dgrWMyTgseDgt~kIWdlR~~~-------~qR~~~~~spVn~vvlhp-nQteLis 141 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQ----CDGRWMYTGSEDGTVKIWDLRSLS-------CQRNYQHNSPVNTVVLHP-NQTELIS 141 (311)
T ss_pred CceeEEeccCCceEEEEEe----ecCeEEEecCCCceEEEEeccCcc-------cchhccCCCCcceEEecC-CcceEEe
Confidence 4789999999999999997 899999999999999999999854 455556889999999998 6778999
Q ss_pred EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784 277 ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS 356 (501)
Q Consensus 277 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~ 356 (501)
|..+|.|++||+......... +......|.++...||
T Consensus 142 ~dqsg~irvWDl~~~~c~~~l-------------------------------------------iPe~~~~i~sl~v~~d 178 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHEL-------------------------------------------IPEDDTSIQSLTVMPD 178 (311)
T ss_pred ecCCCcEEEEEccCCcccccc-------------------------------------------CCCCCcceeeEEEcCC
Confidence 999999999999886432211 1122467899999999
Q ss_pred CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccCC
Q 010784 357 KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCNY 433 (501)
Q Consensus 357 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~ 433 (501)
|.+++.+...+ .++|++.+.+......|+..++.|.+.+..+.+||+ ++|+++|.|.+++||+.++. +.-..+
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l---- 254 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL---- 254 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe----
Confidence 99999999777 999999987766667889999999999999999999 99999999999999999987 444555
Q ss_pred CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784 434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK 478 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s 478 (501)
.+|..++..++||.||+||++|+ .|+.+++|+++.++.....
T Consensus 255 -~gh~rWvWdc~FS~dg~YlvTas--sd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 255 -TGHQRWVWDCAFSADGEYLVTAS--SDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred -ecCCceEEeeeeccCccEEEecC--CCCceeecccccCceeeec
Confidence 56788999999999999999999 5599999999988864443
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.4e-41 Score=275.20 Aligned_cols=272 Identities=20% Similarity=0.261 Sum_probs=242.9
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+..++|+||.+.|.++.|++ |.+++++++.||.+.||| +...++.++-...-|...+|+ |.
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~-------------Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s----PS 108 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWST-------------DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS----PS 108 (343)
T ss_pred eeEEEecccccceeeeEecC-------------CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC----CC
Confidence 44588999999999999999 899999999999999999 677777777788899999997 89
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
|+++++|+.|....||++.+.+.....+....+.+|++.+.+..|.+ ...|+|+|.|.+..+||+++++
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~--------- 177 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQ--------- 177 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccce---------
Confidence 99999999999999999997755555566778999999999999984 5689999999999999998874
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
.+..+.+|.+.|.+++++| +++.+++|+-|+ .++||++.+...
T Consensus 178 -----------------------------------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~ 222 (343)
T KOG0286|consen 178 -----------------------------------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV 222 (343)
T ss_pred -----------------------------------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee
Confidence 4567889999999999999 899999999888 999999997665
Q ss_pred CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
++|.+|+..|+++.|.|+ .-+++||.|++.++||++..+.+..+.. .....+|++++||..|++|++|.
T Consensus 223 ------qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy- 292 (343)
T KOG0286|consen 223 ------QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGY- 292 (343)
T ss_pred ------EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeee-
Confidence 999999999999999999 8899999999999999999999988852 33467899999999999999997
Q ss_pred CCCceEEEee---------------------ccCCccceeecCCCCceeeec
Q 010784 459 GEPGLLQFRD---------------------FSNATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 459 d~~g~i~~w~---------------------~~~~~~~~~s~~~d~~~~~w~ 489 (501)
.|.++.+|| +.+++..+++||-|.++|+|.
T Consensus 293 -~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 -DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 679999999 456777788999999999995
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.7e-42 Score=293.16 Aligned_cols=284 Identities=18% Similarity=0.239 Sum_probs=253.1
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
..+|+.+.|.|+|+.|++|+..|.+.+|+..+ ......++.|.++|+++.|++ ++.+++||+.+|.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~-------------~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSH-------------NGTWMISGDKGGM 161 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEcc-------------CCCEEEEcCCCce
Confidence 44699999999999999999999999999865 466677889999999999999 8999999999999
Q ss_pred eEEec-CCceeeeccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 190 IRLWW-KGSCQRCFKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 190 i~vwd-~~~~~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
|++|+ ....++.+.+|. ..|++++|+ |+...|++++.||+|+|||...... ...+.+|.-.|.++.|+
T Consensus 162 iKyWqpnmnnVk~~~ahh~eaIRdlafS----pnDskF~t~SdDg~ikiWdf~~~ke------e~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 162 IKYWQPNMNNVKIIQAHHAEAIRDLAFS----PNDSKFLTCSDDGTIKIWDFRMPKE------ERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEecccchhhhHHhhHhhhhhhheeccC----CCCceeEEecCCCeEEEEeccCCch------hheeccCCCCcceeccC
Confidence 99999 666666666655 999999998 7888999999999999999988764 56779999999999999
Q ss_pred ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
| ...++++||.|..|++||.+++.+ +.++..|+..
T Consensus 232 P-~kgLiasgskDnlVKlWDprSg~c--------------------------------------------l~tlh~HKnt 266 (464)
T KOG0284|consen 232 P-TKGLIASGSKDNLVKLWDPRSGSC--------------------------------------------LATLHGHKNT 266 (464)
T ss_pred C-ccceeEEccCCceeEeecCCCcch--------------------------------------------hhhhhhccce
Confidence 9 567999999999999999998854 3456679999
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM 424 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~ 424 (501)
|..+.|+|++++|+++|.|. ++++|+++.+.+ ..+++|...|+++.|+|- .++++|+.||.|..|.+...+
T Consensus 267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred EEEEEEcCCCCeeEEccCCceEEEEehhHhHHH------HHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 99999999999999999999 999999976655 899999999999999998 999999999999999998777
Q ss_pred cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
++..+. .+|...|.+++|+|-|.+|++|+ .|.++++|.-..+..
T Consensus 341 p~~~i~----~AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 341 PLGEIP----PAHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRNRPGD 384 (464)
T ss_pred cccCCC----cccccceeeeeccccceeEeecC--CCcceeeeccCCCCC
Confidence 777774 67899999999999999999998 779999998665544
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-41 Score=306.06 Aligned_cols=353 Identities=18% Similarity=0.289 Sum_probs=280.4
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.|..|+--++|+|.+..+++|+.|+.++|||+..+ .+.+.|+||.+.|.++.|.|+ .....|++|..|
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-~~th~fkG~gGvVssl~F~~~-----------~~~~lL~sg~~D 170 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG-YCTHSFKGHGGVVSSLLFHPH-----------WNRWLLASGATD 170 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC-EEEEEecCCCceEEEEEeCCc-----------cchhheeecCCC
Confidence 46788999999999999999999999999999985 899999999999999999994 245679999999
Q ss_pred CceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc--------------------
Q 010784 188 HSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK-------------------- 244 (501)
Q Consensus 188 g~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-------------------- 244 (501)
+++++|| ...++.+...|.+.|+++.|+ +++..+++++.|..+.+||+.+.+.
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~----~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~ 246 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFS----EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL 246 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeec----cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence 9999999 334678889999999999997 6788888888888888888744322
Q ss_pred --------------------------------------------------------------------------------
Q 010784 245 -------------------------------------------------------------------------------- 244 (501)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (501)
T Consensus 247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI 326 (775)
T KOG0319|consen 247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI 326 (775)
T ss_pred CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence
Q ss_pred ------------------cccc-------cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 245 ------------------RGQQ-------ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 245 ------------------~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
.+.. ..-+.+.+|+..|.++... ..+.+|++|+.|.++++|.++.+..... ..
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~-~~ 404 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSL-CV 404 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhh-hh
Confidence 0000 0113567888999988854 2667999999999999999854432111 11
Q ss_pred ccceecCCCceeeecCC---CeEEEEe-CCcEEEEEcCCCce---------EeeeccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784 300 VGMTSVPGVPVDMKCHE---SMLYIAS-GSSVVTIDLRTMQK---------VMTPAICKPILHSFSIMPSKSLICTGGIG 366 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~---~~~~~~~-~~~i~~~d~~~~~~---------~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 366 (501)
.....+...+.++..+. ..++.++ +.++++|++...+. ..+...|...|++++++|+..++++||.|
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 11113444444444432 2222222 34899999976221 12445799999999999999999999999
Q ss_pred c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784 367 K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS 444 (501)
Q Consensus 367 ~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 444 (501)
+ .+||++..... ..++.+|...|.++.|+|. ++++++|.|++|+||.++++.++++| .+|...|..+
T Consensus 485 ktaKiW~le~~~l------~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-----eGH~~aVlra 553 (775)
T KOG0319|consen 485 KTAKIWDLEQLRL------LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-----EGHTSAVLRA 553 (775)
T ss_pred cceeeecccCceE------EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-----cCccceeEee
Confidence 9 99999996544 4999999999999999999 99999999999999999999999999 7889999999
Q ss_pred EeeccccEEEEeecCCCceEEEeeccCCc---------------------cceeecCCCCceeeeccc
Q 010784 445 AMAVSGCRIVTASYGEPGLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~ 491 (501)
.|-.+|+.|++++ .||.|++|++.+.. ..+++|+.|+.+-+|.=.
T Consensus 554 ~F~~~~~qliS~~--adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 554 SFIRNGKQLISAG--ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeeeCCcEEEecc--CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 9999999999999 56999999976543 346789999999999643
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=297.65 Aligned_cols=354 Identities=21% Similarity=0.292 Sum_probs=280.6
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.+++++++||+.++++++....+++|++.++ ++++.++. |+++|.-++|+| .+.++++|+.||.+
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L~tg-k~irswKa~He~Pvi~ma~~~-------------~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSLPTG-KLIRSWKAIHEAPVITMAFDP-------------TGTLLATGGADGRV 129 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEcccc-hHhHhHhhccCCCeEEEEEcC-------------CCceEEeccccceE
Confidence 3999999999999999999999999999996 99999998 999999999999 78999999999999
Q ss_pred EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
+||| .+.+...|++|.+.|.++.|+|. .....|++|+.|+.+++||+++... ++..+..|.+.|+++.+.+
T Consensus 130 ~VWdi~~~~~th~fkG~gGvVssl~F~~~--~~~~lL~sg~~D~~v~vwnl~~~~t-----cl~~~~~H~S~vtsL~~~~ 202 (775)
T KOG0319|consen 130 KVWDIKNGYCTHSFKGHGGVVSSLLFHPH--WNRWLLASGATDGTVRVWNLNDKRT-----CLHTMILHKSAVTSLAFSE 202 (775)
T ss_pred EEEEeeCCEEEEEecCCCceEEEEEeCCc--cchhheeecCCCceEEEEEcccCch-----HHHHHHhhhhheeeeeecc
Confidence 9999 88899999999999999999853 3346799999999999999997664 7888999999999999997
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceeccc---------c-----------e-------------------------
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG---------M-----------T------------------------- 303 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---------~-----------~------------------------- 303 (501)
++..+++++.|..+.+||+.+.+......... . .
T Consensus 203 -d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~ 281 (775)
T KOG0319|consen 203 -DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS 281 (775)
T ss_pred -CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc
Confidence 67888899999999999986443221100000 0 0
Q ss_pred ---------------------------------------ecCCCceeeecC---CCeEEEEeCC-cEEEEEcCCCceEee
Q 010784 304 ---------------------------------------SVPGVPVDMKCH---ESMLYIASGS-SVVTIDLRTMQKVMT 340 (501)
Q Consensus 304 ---------------------------------------~~~~~~~~~~~~---~~~~~~~~~~-~i~~~d~~~~~~~~~ 340 (501)
.....+..|.+- .+.+++|+.+ .+++|+..+..+. .
T Consensus 282 ~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-i 360 (775)
T KOG0319|consen 282 EEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-I 360 (775)
T ss_pred hhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-E
Confidence 000011111111 1233344433 5666666555544 6
Q ss_pred eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC---------------------------------------
Q 010784 341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV--------------------------------------- 380 (501)
Q Consensus 341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~--------------------------------------- 380 (501)
+.+|...|.++....+|.+|++|+.|+ +++|.+.++....
T Consensus 361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD 440 (775)
T ss_pred EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence 778999999999777788999999888 9999774332110
Q ss_pred --C-----CCCcc----cccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 381 --K-----PQPMA----ELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 381 --~-----~~~~~----~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
. ...+. +...|...|++++++|+ +++|+||.|.+.+||+++..+.+.++ .+|...|.++.|++
T Consensus 441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL-----sGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL-----SGHTRGVWCVSFSK 515 (775)
T ss_pred CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe-----eCCccceEEEEecc
Confidence 0 00111 23458889999999999 99999999999999999999999999 68889999999999
Q ss_pred cccEEEEeecCCCceEEEeeccC---------------------CccceeecCCCCceeeecccCCCC
Q 010784 449 SGCRIVTASYGEPGLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWGPQCYSD 495 (501)
Q Consensus 449 ~g~~l~s~~~d~~g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~~~~~~~ 495 (501)
..+.++++| .|++|++|.+++ .+..++|++.||-+|+|++.....
T Consensus 516 ~dq~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 516 NDQLLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred ccceeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 999999999 669999999653 445688999999999999987654
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-38 Score=278.73 Aligned_cols=343 Identities=18% Similarity=0.213 Sum_probs=273.1
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc---cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS---DHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..|.+-|+|+.++|||.++|+.+.||.+.+||-.++ +.+..+. +|++.|.++.|+| |+..|+|
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsP-------------Ds~~~~T 252 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSP-------------DSTQFLT 252 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECC-------------CCceEEE
Confidence 335555999999999999999999999999999986 7777777 8999999999999 8999999
Q ss_pred eeCCCceEEec--CCceee-------------------------------------------eccCCCCceEEEEeeecC
Q 010784 184 SSCDHSIRLWW--KGSCQR-------------------------------------------CFKGHNGPVSTLSDKLLG 218 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~-------------------------------------------~~~~h~~~v~~l~~s~~~ 218 (501)
++.|.+++||| +.++++ .+.+|...|+++..+
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~--- 329 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS--- 329 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc---
Confidence 99999999998 332221 345899999999997
Q ss_pred CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
+++.+|++|+.||.|.-|+..++.. ....-++|+..|.+++.+ +...+++.+.|.++++.++........
T Consensus 330 -~d~~~i~SgsyDG~I~~W~~~~g~~-----~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~-- 399 (603)
T KOG0318|consen 330 -PDGKTIYSGSYDGHINSWDSGSGTS-----DRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKS-- 399 (603)
T ss_pred -CCCCEEEeeccCceEEEEecCCccc-----cccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCccccc--
Confidence 8899999999999999999998864 222237799999999987 445788999999999999876533221
Q ss_pred cccceecCCCceeeecCCC--eEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 299 CVGMTSVPGVPVDMKCHES--MLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
........+..+...++ ..++++.+.|.++.-.+.- .... -.....+++++|++..++.|++|+ +++|.+..
T Consensus 400 --~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~--~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 400 --EVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV--SSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred --ceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc--eeec-cccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 11234445555555544 6677777777776533222 2222 244567899999999999999999 99999988
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV 454 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 454 (501)
.... ....+..|.++|++++++|+ .+||+|...+.+.+||+.+.+...... .-|...|.+++|+|+..++|
T Consensus 475 ~~l~----ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w----~FHtakI~~~aWsP~n~~vA 546 (603)
T KOG0318|consen 475 DELK----EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW----AFHTAKINCVAWSPNNKLVA 546 (603)
T ss_pred Cccc----ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee----eeeeeeEEEEEeCCCceEEE
Confidence 6532 23456679999999999999 999999999999999999887633221 45889999999999999999
Q ss_pred EeecCCCceEEEeeccCCcc---------------------ceeecCCCCceeeeccc
Q 010784 455 TASYGEPGLLQFRDFSNATC---------------------PVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 455 s~~~d~~g~i~~w~~~~~~~---------------------~~~s~~~d~~~~~w~~~ 491 (501)
+|+ -|.+|.+|++..+.. -+++.+.|..+|+|++.
T Consensus 547 TGS--lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 547 TGS--LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ecc--ccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 999 559999999875443 35688899999999874
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-40 Score=276.23 Aligned_cols=286 Identities=18% Similarity=0.249 Sum_probs=256.6
Q ss_pred CeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 101 PLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 101 ~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
++..+...+..+|+.+-++|+...+++++.|++|++||..++ ++...++||.+.|..++|+. .|.+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a-------------~Gk~ 164 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-ELERSLRGHTDSVFDISFDA-------------SGKY 164 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch-hhhhhhhccccceeEEEEec-------------CccE
Confidence 444556667778999999999999999999999999999996 88999999999999999998 7999
Q ss_pred EEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 181 LVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 181 l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
+++++.|-.+++|| ...+++.+.+|...|.++.|. |.|.++++++.|.+|+.|++.++. ++.++.+|
T Consensus 165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~----P~gd~ilS~srD~tik~We~~tg~------cv~t~~~h 234 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL----PLGDHILSCSRDNTIKAWECDTGY------CVKTFPGH 234 (406)
T ss_pred EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE----ecCCeeeecccccceeEEecccce------eEEeccCc
Confidence 99999999999999 356778888999999999998 678999999999999999999987 59999999
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
...|..++.+. ++.++++++.|.+|++|-+.++++.
T Consensus 235 ~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k------------------------------------------- 270 (406)
T KOG0295|consen 235 SEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK------------------------------------------- 270 (406)
T ss_pred hHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh-------------------------------------------
Confidence 99999999995 8999999999999999999887432
Q ss_pred EeeeccCCCcEEEEEEcC---------------CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784 338 VMTPAICKPILHSFSIMP---------------SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD 401 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~---------------~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 401 (501)
..++.|+.+|.+++|-| .+.++++++.|+ |++||+.++.++ .++.+|.+.|..++|+
T Consensus 271 -~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL------~tL~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 271 -AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL------FTLVGHDNWVRGVAFS 343 (406)
T ss_pred -hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE------EEEecccceeeeeEEc
Confidence 24456777777777765 136899999999 999999997665 9999999999999999
Q ss_pred CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
|. ++|+++.+|+++++||+++++++.++ ..|..-++++.|..+..++++|+ -|..+++|.
T Consensus 344 p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-----~ah~hfvt~lDfh~~~p~VvTGs--Vdqt~KvwE 404 (406)
T KOG0295|consen 344 PGGKYILSCADDKTLRVWDLKNLQCMKTL-----EAHEHFVTSLDFHKTAPYVVTGS--VDQTVKVWE 404 (406)
T ss_pred CCCeEEEEEecCCcEEEEEeccceeeecc-----CCCcceeEEEecCCCCceEEecc--ccceeeeee
Confidence 99 99999999999999999999999999 56788899999999999999999 559999986
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=274.20 Aligned_cols=289 Identities=19% Similarity=0.317 Sum_probs=253.7
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
....|-.=|.|++++|...++++|+.|++++|||+.+| ++..++.||...|..+++|+ .-.+++++
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~-------------rHpYlFs~ 211 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSK-------------RHPYLFSA 211 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecc-------------cCceEEEe
Confidence 34445555999999999999999999999999999996 99999999999999999998 67899999
Q ss_pred eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+.|+.|+-|| ..+.++.+.+|-..|.|++.+ |.-+.|++|+.|.++++||+++... +..+.+|..+|.
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh----PTldvl~t~grDst~RvWDiRtr~~------V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH----PTLDVLVTGGRDSTIRVWDIRTRAS------VHVLSGHTNPVA 281 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEecc----ccceeEEecCCcceEEEeeecccce------EEEecCCCCcce
Confidence 9999999999 778899999999999999997 7888999999999999999999874 899999999999
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 342 (501)
.+.+.|.+ ..+++||.|++|++||++.++. ..++.
T Consensus 282 ~V~~~~~d-pqvit~S~D~tvrlWDl~agkt--------------------------------------------~~tlt 316 (460)
T KOG0285|consen 282 SVMCQPTD-PQVITGSHDSTVRLWDLRAGKT--------------------------------------------MITLT 316 (460)
T ss_pred eEEeecCC-CceEEecCCceEEEeeeccCce--------------------------------------------eEeee
Confidence 99998744 4789999999999999998742 34556
Q ss_pred cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784 343 ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 343 ~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~ 422 (501)
.|...+.+++.+|....+++++.|.|+.|++..+..+ +.+.+|...|++++.+.+.++++|+.+|.+.+||.++
T Consensus 317 ~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~------~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 317 HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFL------QNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred cccceeeEEecCCchhhhhccCCccceeccCCccchh------hccccccceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 6899999999999999999999999999999997665 7799999999999999998888888999999999999
Q ss_pred cccccccccC---CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 423 GMLANSLLCN---YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 423 ~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
|...+.+... ........|.+.+|...|..|++|. .|.+|++|.-.
T Consensus 391 g~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e--adKtIk~~keD 439 (460)
T KOG0285|consen 391 GHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE--ADKTIKMYKED 439 (460)
T ss_pred CcccccccccccCCccccccceeEEeecccCceEEecc--CCcceEEEecc
Confidence 8665554211 1123356789999999999999999 55999999744
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-39 Score=281.09 Aligned_cols=275 Identities=18% Similarity=0.279 Sum_probs=247.5
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
+.|++++|+.+|.+||+|+.+|.+++|+.. +.++.+|..|+++|.++.|+. .|++|++++.||++
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk-------------~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNK-------------KGTYILSGGVDGTT 300 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcC-------------CCCEEEeccCCccE
Confidence 459999999999999999999999999988 588899999999999999998 89999999999999
Q ss_pred EEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 191 RLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 191 ~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
.+|| ++...+.+..|..+-..+.|. +...+++++.||.|+|+.+.... ++.++.+|.++|.++.|.|
T Consensus 301 ilwd~~~g~~~q~f~~~s~~~lDVdW~-----~~~~F~ts~td~~i~V~kv~~~~------P~~t~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAPALDVDWQ-----SNDEFATSSTDGCIHVCKVGEDR------PVKTFIGHHGEVNALKWNP 369 (524)
T ss_pred EEEeccCceEEEeeeeccCCccceEEe-----cCceEeecCCCceEEEEEecCCC------cceeeecccCceEEEEECC
Confidence 9999 788889999999988889994 67789999999999999998766 6889999999999999998
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
.+.+|+++|.|+++++|+...... ...+..|...|
T Consensus 370 -tg~LLaS~SdD~TlkiWs~~~~~~--------------------------------------------~~~l~~Hskei 404 (524)
T KOG0273|consen 370 -TGSLLASCSDDGTLKIWSMGQSNS--------------------------------------------VHDLQAHSKEI 404 (524)
T ss_pred -CCceEEEecCCCeeEeeecCCCcc--------------------------------------------hhhhhhhccce
Confidence 788999999999999999876532 24567789999
Q ss_pred EEEEEcCC---------CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 349 HSFSIMPS---------KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 349 ~~v~~~~~---------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
+.+.|+|. +..+++++.|. |++||+..+.++ ++|..|..+|++++|+|+ +++|+|+.||.|.+
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i------~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI------HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee------EeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 99999985 34788888888 999999997654 999999999999999999 99999999999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
|+.++++..+++. ....|..++|+.+|.+|..+- .|+.+++.|+.
T Consensus 479 ws~~~~~l~~s~~------~~~~Ifel~Wn~~G~kl~~~~--sd~~vcvldlr 523 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQ------GTGGIFELCWNAAGDKLGACA--SDGSVCVLDLR 523 (524)
T ss_pred ccccchheeEeec------CCCeEEEEEEcCCCCEEEEEe--cCCCceEEEec
Confidence 9999999999994 256699999999999998887 56999998875
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-38 Score=256.77 Aligned_cols=266 Identities=21% Similarity=0.344 Sum_probs=230.0
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-------CCceeeeccCCCCceEEEEeee
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-------KGSCQRCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-------~~~~~~~~~~h~~~v~~l~~s~ 216 (501)
....++++|++.|+.++..+. +.+.+++++.|.++.+|+ .|..++.+.+|...|..+..+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~------------~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s- 72 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIK------------NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS- 72 (315)
T ss_pred eeeeeecCCCceEEEEEeecC------------CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc-
Confidence 456688999999999999884 468999999999999996 567789999999999999997
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
++|++.++++.|+++++||+.+++ ..+.+.+|...|.+++|++ +...+++|+.|.+|++|++.....
T Consensus 73 ---~dg~~alS~swD~~lrlWDl~~g~------~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck--- 139 (315)
T KOG0279|consen 73 ---SDGNFALSASWDGTLRLWDLATGE------STRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK--- 139 (315)
T ss_pred ---cCCceEEeccccceEEEEEecCCc------EEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE---
Confidence 899999999999999999999986 5889999999999999998 788999999999999999876521
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc--CCCcEEEEEEcCC--CcEEEEEcCCc-EEEE
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI--CKPILHSFSIMPS--KSLICTGGIGK-AMTW 371 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~v~~~~~--~~~l~~~~~d~-i~iw 371 (501)
.++.. +.+.|.++.|+|+ .-+|++++.|+ +++|
T Consensus 140 ------------------------------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvW 177 (315)
T KOG0279|consen 140 ------------------------------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVW 177 (315)
T ss_pred ------------------------------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEE
Confidence 22222 3688999999998 78999999999 9999
Q ss_pred ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
|+++.+.. ..+.+|.+.++.++++|+ .+.++|+.||.+.+||+..++.+.++ ++...|.+++|+|+.
T Consensus 178 nl~~~~l~------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl------~a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 178 NLRNCQLR------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL------EAFDIVNSLCFSPNR 245 (315)
T ss_pred ccCCcchh------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec------cCCCeEeeEEecCCc
Confidence 99997655 889999999999999999 99999999999999999999999888 467889999999999
Q ss_pred cEEEEeecCCCceEEEeeccC------------------------------CccceeecCCCCceeeecccC
Q 010784 451 CRIVTASYGEPGLLQFRDFSN------------------------------ATCPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w~~~~------------------------------~~~~~~s~~~d~~~~~w~~~~ 492 (501)
-.|+.+.. ..|++||+.. ++.-+.+|-.|+.+++|.+..
T Consensus 246 ywL~~at~---~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 246 YWLCAATA---TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred eeEeeccC---CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 88888753 4699999543 223344666788888887653
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.7e-38 Score=265.14 Aligned_cols=328 Identities=16% Similarity=0.164 Sum_probs=262.0
Q ss_pred CCeeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784 100 DPLDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN 179 (501)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
......|..|..++.+++++|+..+++||+.|-.-.+|++.++ .....+.+|++.|+++.|+. +|.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~Fsh-------------dgt 119 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSH-------------DGT 119 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEcc-------------Cce
Confidence 4445678889999999999999999999999999999999996 68899999999999999999 899
Q ss_pred EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 180 VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
+||||+.+|.|+||+ ++.....+...-..+.-|.|+ |.+.+|+.|+.||.+-+|.+.++. ..+.+.+|
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH----p~a~illAG~~DGsvWmw~ip~~~------~~kv~~Gh 189 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH----PRAHILLAGSTDGSVWMWQIPSQA------LCKVMSGH 189 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEec----ccccEEEeecCCCcEEEEECCCcc------eeeEecCC
Confidence 999999999999998 676666766566778888898 789999999999999999999864 47889999
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCC
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRT 334 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~ 334 (501)
+.++++=.|.| +++.++++..||+|++||+.+++++....... .....++..+...-.+..+ +.+++....+
T Consensus 190 ~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e----~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 190 NSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAE----GLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred CCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccc----cCcCCccccccccceeEeccCCccEEEEcccc
Confidence 99999999998 79999999999999999999997654433211 1111222222222122211 2444444444
Q ss_pred CceEeeec--------cCCCcEEEEEE---cCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 335 MQKVMTPA--------ICKPILHSFSI---MPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 335 ~~~~~~~~--------~~~~~v~~v~~---~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
++.+.... .+...+.++.+ +..-.+.|+|+-|+ |.|||+...+. +..-.|..+|+.+.|.+
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-------R~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-------RHICEHEDGVTKLKWLN 337 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-------heeccCCCceEEEEEcC
Confidence 44443333 34444555544 44567889999888 99999998653 44446888999999999
Q ss_pred CeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 403 YKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 403 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
..++++++.||.|+.||.++|+++.++ .+|...|.+++++|++++++++| .|+..+||++.
T Consensus 338 t~~l~t~c~~g~v~~wDaRtG~l~~~y-----~GH~~~Il~f~ls~~~~~vvT~s--~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDARTGQLKFTY-----TGHQMGILDFALSPQKRLVVTVS--DDNTALVFEVP 398 (399)
T ss_pred cchheeeccCceEEeeeccccceEEEE-----ecCchheeEEEEcCCCcEEEEec--CCCeEEEEecC
Confidence 856666679999999999999999999 67889999999999999999999 77999999864
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-37 Score=272.78 Aligned_cols=373 Identities=14% Similarity=0.158 Sum_probs=283.8
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-ccccceecccCCcceeEEEeeccCc----------------
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-ESYYRATLSDHKARITCMRLFPLHE---------------- 166 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-~~~~~~~~~~h~~~V~~~~~~~~~~---------------- 166 (501)
..|..|..+++-..++|.|-|+|+|...|.|+|||... +.-+...++.-.++|..++|+.++.
T Consensus 53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F 132 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF 132 (603)
T ss_pred eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence 45566777899999999999999999999999999754 2222333444455566666655433
Q ss_pred ---------------CcccccCCCCc-CcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 167 ---------------TSLFRSEPQRT-ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 167 ---------------~~~~~~~~~~~-~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
.-+.++++-|. .-+++||+.|++|.+|+ --+...+++.|..-|.|+.|+ |+|.+++++
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys----PDG~~Fat~ 208 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS----PDGSRFATA 208 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC----CCCCeEEEe
Confidence 11233333333 35788888888888887 445556778899999999997 899999999
Q ss_pred eCCCcEEEEeccCCCccccccceeecc---CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784 229 GEDATVRLWSLSSSGKRGQQALKATLY---GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV 305 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 305 (501)
+.||.|.+||-.++++ +..+. +|.+.|.+++|+| ++..+++++.|.+++|||+.+.+.+..+..... .
T Consensus 209 gsDgki~iyDGktge~------vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~--v 279 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEK------VGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST--V 279 (603)
T ss_pred cCCccEEEEcCCCccE------EEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCc--h
Confidence 9999999999999885 55555 8999999999999 888999999999999999999977665544333 3
Q ss_pred CCCceeeecCCCeEE-EEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC--
Q 010784 306 PGVPVDMKCHESMLY-IASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK-- 381 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~-- 381 (501)
......+-+..+.++ +..++.+..++......+..+.+|...|+++..+|++.+|++|+.|+ |.-|+..++..-..
T Consensus 280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 334444445554444 44567999999999999999999999999999999999999999999 99999876543200
Q ss_pred ---C-------------------------------------------CC-------------------cccccCc-----
Q 010784 382 ---P-------------------------------------------QP-------------------MAELDGH----- 391 (501)
Q Consensus 382 ---~-------------------------------------------~~-------------------~~~~~~h----- 391 (501)
. +| +..++.+
T Consensus 360 ~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~ 439 (603)
T KOG0318|consen 360 KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS 439 (603)
T ss_pred ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee
Confidence 0 00 0001111
Q ss_pred ---ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 392 ---VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 392 ---~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
.-...+++++|+ ..++.|+.||.|+||.+..+.+...... ..|.++|++++||||+.+||++. ..+.+.+|
T Consensus 440 ~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~D--a~rkvv~y 514 (603)
T KOG0318|consen 440 IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAGD--ASRKVVLY 514 (603)
T ss_pred eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---ecccCCceEEEECCCCcEEEEec--cCCcEEEE
Confidence 113467888999 8888888999999999987554333211 56889999999999999999997 66999999
Q ss_pred ecc----------------------CCccceeecCCCCceeeecccCCC
Q 010784 468 DFS----------------------NATCPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 468 ~~~----------------------~~~~~~~s~~~d~~~~~w~~~~~~ 494 (501)
|+. +....+++|+-|..+.+|++....
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 854 455678899999999999987543
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-38 Score=273.78 Aligned_cols=304 Identities=17% Similarity=0.229 Sum_probs=257.3
Q ss_pred EEEecCCCCceEEeeCCcE-EEeecCCeeeEEEEecccc-cc--cceec------ccC----CcceeEEEeeccCcCccc
Q 010784 105 CFYSVAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSE-SY--YRATL------SDH----KARITCMRLFPLHETSLF 170 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~-~~--~~~~~------~~h----~~~V~~~~~~~~~~~~~~ 170 (501)
....|..+|.+.+|+|-.. .+++|+.+-..++|++... .. ....| .++ ...|++++|+.
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~------- 245 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN------- 245 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-------
Confidence 3444778899999999887 9999999999999998731 00 11111 112 35699999998
Q ss_pred ccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784 171 RSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA 249 (501)
Q Consensus 171 ~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 249 (501)
+|..||+|+.||.+++|+ .|..+.++..|.++|.++.|. .+|++|++++.|+++.+||..++.
T Consensus 246 ------~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWn----k~G~yilS~~vD~ttilwd~~~g~------ 309 (524)
T KOG0273|consen 246 ------DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWN----KKGTYILSGGVDGTTILWDAHTGT------ 309 (524)
T ss_pred ------CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEc----CCCCEEEeccCCccEEEEeccCce------
Confidence 899999999999999999 999999999999999999996 899999999999999999999887
Q ss_pred ceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 250 LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 250 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
..+.+.-|..+-..+.|- +...|++++.|+.|+|+-+....
T Consensus 310 ~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~------------------------------------- 350 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR------------------------------------- 350 (524)
T ss_pred EEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC-------------------------------------
Confidence 467777888886778886 56689999999999999887653
Q ss_pred EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----
Q 010784 330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY----- 403 (501)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----- 403 (501)
++.++.+|.++|.++.|+|.|.+|+++++|+ ++||.+...... ..++.|...|+.+.|+|.
T Consensus 351 -------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------~~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 351 -------PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------HDLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred -------cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch------hhhhhhccceeeEeecCCCCccC
Confidence 4467788999999999999999999999999 999999886554 899999999999999873
Q ss_pred -----eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784 404 -----KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK 478 (501)
Q Consensus 404 -----~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s 478 (501)
..+++++.|++|++||+..+.++.+| ..|..+|.+++|+|+|+++++|+ -||.|.+|+...+......
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-----~kH~~pVysvafS~~g~ylAsGs--~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESGVPIHTL-----MKHQEPVYSVAFSPNGRYLASGS--LDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCCceeEee-----ccCCCceEEEEecCCCcEEEecC--CCCeeEeccccchheeEee
Confidence 46777789999999999999999999 67889999999999999999999 5599999999988866656
Q ss_pred cCCCC-ceeeecc
Q 010784 479 HEVQN-DSKFWGP 490 (501)
Q Consensus 479 ~~~d~-~~~~w~~ 490 (501)
.+.++ .--.|+.
T Consensus 491 ~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 491 QGTGGIFELCWNA 503 (524)
T ss_pred cCCCeEEEEEEcC
Confidence 65555 3344544
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=251.14 Aligned_cols=290 Identities=16% Similarity=0.233 Sum_probs=242.1
Q ss_pred EEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccc--cccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 106 FYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSE--SYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~--~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
...+...+-.++++|. |..||+++.|+.|++|+...+ ..+...+ .+|+..|++++|+| .|++|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-------------~g~~L 76 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-------------HGRYL 76 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-------------CCcEE
Confidence 3445556889999998 999999999999999998842 2233333 47999999999999 89999
Q ss_pred EEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 182 VTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 182 ~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
++|+.|.++.||. ..+++.++.+|+..|.|++|+ ++|++||+++.|..|-||.+..+. +..+...+..|
T Consensus 77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws----~sG~~LATCSRDKSVWiWe~dedd---Efec~aVL~~H 149 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS----ASGNYLATCSRDKSVWIWEIDEDD---EFECIAVLQEH 149 (312)
T ss_pred EEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc----CCCCEEEEeeCCCeEEEEEecCCC---cEEEEeeeccc
Confidence 9999999999996 457899999999999999997 899999999999999999998554 35678899999
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
+..|..+.|+| ...+|+++|.|.+|++|+-... ....+
T Consensus 150 tqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~d-----------------------------------------ddW~c 187 (312)
T KOG0645|consen 150 TQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDD-----------------------------------------DDWEC 187 (312)
T ss_pred cccccEEEEcC-CcceeEEeccCCeEEEEeecCC-----------------------------------------CCeeE
Confidence 99999999998 6779999999999999987632 12345
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEE
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRIN 416 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~ 416 (501)
..++.+|...|.+++|++.|..|+++++|+ ++||...+. .-..|...++.+.|. +.+|++++.|+.|+
T Consensus 188 ~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----------~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~ 256 (312)
T KOG0645|consen 188 VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----------LSGMHSRALYDVPWD-NGVIASGGGDDAIR 256 (312)
T ss_pred EEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----------cchhcccceEeeeec-ccceEeccCCCEEE
Confidence 678889999999999999999999999999 999997742 222467899999999 77888888999999
Q ss_pred EEeCCCc--ccccccccCCCCCCCcceeeeEeecc-ccEEEEeecCCCceEEEeecc
Q 010784 417 IWETDTG--MLANSLLCNYPEEADISTGCSAMAVS-GCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 417 iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+|.-... .+...+..+....|...|+++.|.|. ..+|++|+ +||.|++|.+.
T Consensus 257 lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~--DDG~v~~W~l~ 311 (312)
T KOG0645|consen 257 LFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG--DDGIVNFWELE 311 (312)
T ss_pred EEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC--CCceEEEEEec
Confidence 9987642 22223333334678889999999995 67889998 67999999874
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-37 Score=281.67 Aligned_cols=357 Identities=15% Similarity=0.170 Sum_probs=285.2
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-------ccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-------YYRATLSDHKARITCMRLFPLHETSLFRSEPQR 176 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~ 176 (501)
...+.-..++.|+.|+|||+++|.|.. +.+.||...... ...+++.||-+.|.++.|+.
T Consensus 90 lh~f~fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~------------- 155 (893)
T KOG0291|consen 90 LHRFNFKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD------------- 155 (893)
T ss_pred eEEEeecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc-------------
Confidence 344456678999999999999998864 789999876432 34567789999999999998
Q ss_pred cCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc--------
Q 010784 177 TENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK-------- 244 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-------- 244 (501)
|.++|++|+.|-+++||. .+-....+.+|...|.+.-|. .+...+++.+.||.+.+|.......
T Consensus 156 DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~----~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd 231 (893)
T KOG0291|consen 156 DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG----ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD 231 (893)
T ss_pred CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEec----cCcceEEEEecCceEEEEEecCCCccccccccc
Confidence 899999999999999997 333456788999999999886 7888899999999999998872110
Q ss_pred -----------ccc-------ccc--eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 245 -----------RGQ-------QAL--KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 245 -----------~~~-------~~~--~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
..+ +.. ...+......|++.+|++ ..+.|++|-..|...+|.+.....+. ...
T Consensus 232 ~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih------~LS 304 (893)
T KOG0291|consen 232 EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIH------SLS 304 (893)
T ss_pred ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEE------Eee
Confidence 000 000 111222336789999997 78899999999999999998875443 333
Q ss_pred cC-CCceeeecCCCeEEEE--eCC--cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 305 VP-GVPVDMKCHESMLYIA--SGS--SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 305 ~~-~~~~~~~~~~~~~~~~--~~~--~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
.. ..+..+.++..+-+++ +.. ++.+|+.++...+...++|...+++++++|||+++++|++|+ |+|||..++-+
T Consensus 305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 33 4556666765554554 443 899999999999999999999999999999999999999999 99999999765
Q ss_pred CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC-----------------------
Q 010784 379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP----------------------- 434 (501)
Q Consensus 379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~----------------------- 434 (501)
. .+|..|+..|+.+.|+.. +.+.+.|.||+|+.||+...+..++|....+
T Consensus 385 ~------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 385 F------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred E------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 5 999999999999999999 8888889999999999876555444432211
Q ss_pred ----------------CCCCcceeeeEeeccccEEEEeecCCCceEEEee---------------------ccCCcccee
Q 010784 435 ----------------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD---------------------FSNATCPVL 477 (501)
Q Consensus 435 ----------------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~---------------------~~~~~~~~~ 477 (501)
.+|.++|.+++|+|+|..|+++|+| .+|++|| +.+++..++
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEE
Confidence 4789999999999999999999976 9999998 456677788
Q ss_pred ecCCCCceeeecccCC
Q 010784 478 KHEVQNDSKFWGPQCY 493 (501)
Q Consensus 478 s~~~d~~~~~w~~~~~ 493 (501)
....||.+-+|++...
T Consensus 537 VaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEA 552 (893)
T ss_pred EEEecceEEEEEhhhc
Confidence 8888999999987644
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=266.82 Aligned_cols=270 Identities=21% Similarity=0.346 Sum_probs=239.4
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
.++.+.+++|.+.|.|+++.| .+..|+||+.|++|+||| ++++..++.+|...|..+++| +
T Consensus 141 wKl~rVi~gHlgWVr~vavdP-------------~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS----~ 203 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDP-------------GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS----K 203 (460)
T ss_pred ceehhhhhhccceEEEEeeCC-------------CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec----c
Confidence 356678899999999999999 689999999999999999 899999999999999999998 6
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
.-.|+++++.|+.|+.||++.++ .+..+.+|-..|.+++.+| .-..|++|+.|.++++||+++..
T Consensus 204 rHpYlFs~gedk~VKCwDLe~nk------vIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~-------- 268 (460)
T KOG0285|consen 204 RHPYLFSAGEDKQVKCWDLEYNK------VIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA-------- 268 (460)
T ss_pred cCceEEEecCCCeeEEEechhhh------hHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc--------
Confidence 77899999999999999999987 5899999999999999998 66799999999999999999863
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
.+..+.+|..+|.++.+.|-.-.+++|+.|. |++||++.++..
T Consensus 269 ------------------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 269 ------------------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred ------------------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee
Confidence 4567889999999999999888999999888 999999998765
Q ss_pred CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
.++..|...|.+++.+|. ..+|+++.| .|+-|++..|..+..+ .+|...|++++...|| ++++|+
T Consensus 313 ------~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl-----sgh~~iintl~~nsD~-v~~~G~- 378 (460)
T KOG0285|consen 313 ------ITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL-----SGHNAIINTLSVNSDG-VLVSGG- 378 (460)
T ss_pred ------EeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc-----ccccceeeeeeeccCc-eEEEcC-
Confidence 888899999999999999 888888666 5999999999999998 6788899999998887 777787
Q ss_pred CCCceEEEeeccC-----------------------------CccceeecCCCCceeeecccCCCC
Q 010784 459 GEPGLLQFRDFSN-----------------------------ATCPVLKHEVQNDSKFWGPQCYSD 495 (501)
Q Consensus 459 d~~g~i~~w~~~~-----------------------------~~~~~~s~~~d~~~~~w~~~~~~~ 495 (501)
++|.+.+||... .+.+++++..|.+|++|.-+....
T Consensus 379 -dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 379 -DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHAT 443 (460)
T ss_pred -CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccC
Confidence 789999999543 334577889999999997654433
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-37 Score=282.74 Aligned_cols=330 Identities=17% Similarity=0.211 Sum_probs=275.9
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
...+..++|.+|++.-..+|+|-..|...++.+.. ..+++.+.--..+|..+.|+. .|+.|+.|+.
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~-------------tGDWiA~g~~ 327 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNS-------------TGDWIAFGCS 327 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecc-------------cCCEEEEcCC
Confidence 33446799999999999999999999999999987 588888888888999999988 7899999886
Q ss_pred C-CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 187 D-HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 187 d-g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
. |.+-||+ ...-+...++|...+++++++ |||+++++|+.||.|+|||...+- +..++..|+..|+.
T Consensus 328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS----pDgq~iaTG~eDgKVKvWn~~Sgf------C~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYS----PDGQLIATGAEDGKVKVWNTQSGF------CFVTFTEHTSGVTA 397 (893)
T ss_pred ccceEEEEEeeccceeeeccccccceeeEEEC----CCCcEEEeccCCCcEEEEeccCce------EEEEeccCCCceEE
Confidence 5 8999999 666677788999999999997 899999999999999999999876 69999999999999
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC----cEEEEEcCCCceEe
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS----SVVTIDLRTMQKVM 339 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~ 339 (501)
+.|+. .++.+++.+-||+|+.||+.....-+.+.. ..+....+++.++.+.++..|. .|.+|++++|+.+-
T Consensus 398 v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 398 VQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred EEEEe-cCCEEEEeecCCeEEeeeecccceeeeecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 99996 889999999999999999988755443332 2223344566666666665554 79999999999999
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
.+.+|+++|.+++|+|++..|+++|.|+ ||+||+-..... +.+++ +...+..++|+|+ +-++.++.||.|.+
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-----vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf 546 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-----VETLE-IRSDVLAVSFRPDGKELAVATLDGQITF 546 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-----eeeEe-eccceeEEEEcCCCCeEEEEEecceEEE
Confidence 9999999999999999999999999999 999999775322 23343 4677999999999 77777789999999
Q ss_pred EeCCCcccccccccCC---------------CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 418 WETDTGMLANSLLCNY---------------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
||+..+..+.++.+.. ........+.+++|+||..|++|| +...|++|++.++-
T Consensus 547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG--~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG--ESNSICIYDVPEGV 615 (893)
T ss_pred EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC--CcccEEEEECchhh
Confidence 9998776664443221 112345688999999999999999 77999999987654
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.8e-38 Score=289.96 Aligned_cols=245 Identities=23% Similarity=0.354 Sum_probs=221.4
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc------------------------------cccceecccCCc
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE------------------------------SYYRATLSDHKA 154 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~------------------------------~~~~~~~~~h~~ 154 (501)
++......++|..|++++.++|.|..|-.|++|.+... ....+++.||.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34445667999999999999999999999999987621 123455789999
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
+|..+.|+| +.++|++++.|+++|+|. +..++-.+++|..+|.++.|+ |.|-++|||+.|+
T Consensus 453 PVyg~sFsP-------------d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~----P~GyYFatas~D~ 515 (707)
T KOG0263|consen 453 PVYGCSFSP-------------DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA----PRGYYFATASHDQ 515 (707)
T ss_pred ceeeeeecc-------------cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec----CCceEEEecCCCc
Confidence 999999999 899999999999999998 788888999999999999997 8899999999999
Q ss_pred cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM 312 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (501)
+.++|..+... +...+.+|.+.|.|+.|+| +.+++++||.|.+|++||+.++.
T Consensus 516 tArLWs~d~~~------PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~-------------------- 568 (707)
T KOG0263|consen 516 TARLWSTDHNK------PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGN-------------------- 568 (707)
T ss_pred eeeeeecccCC------chhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCc--------------------
Confidence 99999999866 5889999999999999999 78999999999999999998874
Q ss_pred ecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc
Q 010784 313 KCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH 391 (501)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h 391 (501)
.++.|.+|.++|.+++|+|+|++|++|++++ |.+||+.+++.+ ..+.+|
T Consensus 569 ------------------------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v------~~l~~H 618 (707)
T KOG0263|consen 569 ------------------------SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV------KQLKGH 618 (707)
T ss_pred ------------------------EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch------hhhhcc
Confidence 3456788999999999999999999999999 999999997665 899999
Q ss_pred ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784 392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~ 423 (501)
.+.|+++.|+.+ .+||+|+.|++|++||+..-
T Consensus 619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999 99999999999999998753
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=257.01 Aligned_cols=287 Identities=19% Similarity=0.299 Sum_probs=243.4
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc--eeeeccCCCCceEEEEeeecCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS--CQRCFKGHNGPVSTLSDKLLGD 219 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~--~~~~~~~h~~~v~~l~~s~~~~ 219 (501)
..++..+.+|++.|+.+.|+| +|.+|+||+.|..|.+|+ .+. -...+++|.++|..+.|.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P-------------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~---- 99 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHP-------------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGM---- 99 (338)
T ss_pred cchhhhcCCCcceEEEEEECC-------------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeec----
Confidence 356677889999999999999 899999999999999999 443 345678999999999996
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
.+++.+++++.|.+|+.||.++++. ...+++|..-|+.+.-...+..++.+++.||++++||+++...+..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--- 170 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKR------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--- 170 (338)
T ss_pred cCCCEEEEecCCceEEEEeccccee------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc---
Confidence 8999999999999999999999984 8899999999998886655678899999999999999998754433
Q ss_pred ccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
........++.+....--+.++ +.|++||++.....+.+.+|.++|+.+..+|+|.++.+-+.|. +++||++.
T Consensus 171 ---~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 171 ---FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ---cccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 2334445566666554444444 4899999999999999999999999999999999999999888 99999997
Q ss_pred CCCCCCCCCcccccCccc----CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 376 SQDAVKPQPMAELDGHVG----SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~----~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
.... .+++..+.+|.. ....++|+|+ ..+.+|+.|..+++||..+...+..+ .+|.+.|+.+.|+|..
T Consensus 248 ~~p~--~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-----pGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 248 FAPS--QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-----PGHYGSVNEVDFHPTE 320 (338)
T ss_pred cCCC--CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-----CCcceeEEEeeecCCC
Confidence 6554 344677777643 3456789999 99999999999999999988899999 6788999999999999
Q ss_pred cEEEEeecCCCceEEEe
Q 010784 451 CRIVTASYGEPGLLQFR 467 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w 467 (501)
.+|.+++ .|.+|++=
T Consensus 321 ~iils~~--sdk~i~lg 335 (338)
T KOG0265|consen 321 PIILSCS--SDKTIYLG 335 (338)
T ss_pred cEEEEec--cCceeEee
Confidence 9999999 45888763
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-38 Score=264.28 Aligned_cols=266 Identities=23% Similarity=0.361 Sum_probs=240.9
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
.....+.+|...|+.+-|+| +-..+++++.|++|++|| ++++...+++|+..|.+++|+ ..
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp-------------~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~----a~ 161 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHP-------------SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFD----AS 161 (406)
T ss_pred Cchhhhhccccceeeeeecc-------------CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEe----cC
Confidence 55667889999999999999 788999999999999999 888999999999999999996 88
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
|.++++++.|-.+++||+.+... ++..+.+|...|.++.|.| .+.++++++.|.+|+.|++.++
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~-----c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg---------- 225 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFR-----CIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTG---------- 225 (406)
T ss_pred ccEEEecCCccchhheeHHHHHH-----HHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccc----------
Confidence 99999999999999999988543 7888999999999999999 6789999999999999999887
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
.++.++.+|...|..++.+.||.++++++.|. +++|-+.+.++.
T Consensus 226 ----------------------------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k- 270 (406)
T KOG0295|consen 226 ----------------------------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK- 270 (406)
T ss_pred ----------------------------------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh-
Confidence 34567888999999999999999999999999 999999997665
Q ss_pred CCCCcccccCcccCeEEEEecCC----------------eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeee
Q 010784 381 KPQPMAELDGHVGSVTQLHMDPY----------------KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCS 444 (501)
Q Consensus 381 ~~~~~~~~~~h~~~v~~l~~~~~----------------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 444 (501)
..+..|+.+|.+++|-|. .+++++|.|++|++||+.++.++.++ .+|.++|..+
T Consensus 271 -----~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-----~ghdnwVr~~ 340 (406)
T KOG0295|consen 271 -----AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-----VGHDNWVRGV 340 (406)
T ss_pred -----hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-----ecccceeeee
Confidence 889999999999999651 48999999999999999999999999 7889999999
Q ss_pred EeeccccEEEEeecCCCceEEEeeccCCc---------------------cceeecCCCCceeeec
Q 010784 445 AMAVSGCRIVTASYGEPGLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWG 489 (501)
Q Consensus 445 ~~s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~ 489 (501)
+|+|.|+||+++. +|+++++||+.+.+ ..+++|+-|.++++|.
T Consensus 341 af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 341 AFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEcCCCeEEEEEe--cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999 78999999977544 2356899999999995
No 29
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=284.16 Aligned_cols=328 Identities=19% Similarity=0.231 Sum_probs=284.2
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
.++|+.-+++...+|.|-.||.|++|+..++ ....++.||+..|+++.|.. .|..|+|||.|+.|.
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~-~~~~tfngHK~AVt~l~fd~-------------~G~rlaSGskDt~II 132 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESE-EILITFNGHKAAVTTLKFDK-------------IGTRLASGSKDTDII 132 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCC-ceeeeecccccceEEEEEcc-------------cCceEeecCCCccEE
Confidence 5899999999999999999999999999985 88889999999999999998 899999999999999
Q ss_pred Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc-------------------------
Q 010784 192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK------------------------- 244 (501)
Q Consensus 192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~------------------------- 244 (501)
||| ...-+..+++|...|+.+-|. .+.+++++.+.|+.|++||+.+...
T Consensus 133 vwDlV~E~Gl~rL~GHkd~iT~~~F~----~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~ 208 (888)
T KOG0306|consen 133 VWDLVGEEGLFRLRGHKDSITQALFL----NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAG 208 (888)
T ss_pred EEEeccceeeEEeecchHHHhHHhcc----CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEe
Confidence 999 455567888999999988886 5678888889999999998877533
Q ss_pred --------------------------------------------------------------------------------
Q 010784 245 -------------------------------------------------------------------------------- 244 (501)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (501)
T Consensus 209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 209 TDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred cCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 010784 245 -------------------------------------------------------------------------------- 244 (501)
Q Consensus 245 -------------------------------------------------------------------------------- 244 (501)
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence
Q ss_pred ----------------------------------------------------------------cc--------ccccee
Q 010784 245 ----------------------------------------------------------------RG--------QQALKA 252 (501)
Q Consensus 245 ----------------------------------------------------------------~~--------~~~~~~ 252 (501)
.+ ...++.
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E 448 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE 448 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence 11 112334
Q ss_pred eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc-------ccceecccceecCCCceeeecCCCeEEEEeC-
Q 010784 253 TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA-------VRSSCCVGMTSVPGVPVDMKCHESMLYIASG- 324 (501)
Q Consensus 253 ~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 324 (501)
+.+.|.+.|..++.+| ++..+++||.|.+|++||..-... ..+.........+..+.++..+|++.+++.+
T Consensus 449 ti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 5568999999999998 788999999999999999753221 1112223344778889999999999888875
Q ss_pred --CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784 325 --SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD 401 (501)
Q Consensus 325 --~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 401 (501)
+++++|-+.+.+-...+.+|.-+|.|+.++||+++++|||.|+ |++|-+.-+.+- ..+-+|...|+++.|-
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH------KS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH------KSFFAHDDSVMSVQFL 601 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh------hhhhcccCceeEEEEc
Confidence 6999999999999999999999999999999999999999999 999999998776 8899999999999999
Q ss_pred CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
|. .++.+++.|+.|+-||-...+.++.+ .+|...|.+++.+|+|.+++++| +|..|++|.-..
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-----~~H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~td 665 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKL-----DGHHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERTD 665 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheee-----ccchheeeeeEEcCCCCeEEecc--CCceeEeeeccC
Confidence 99 77777789999999999999999999 67888999999999999999999 779999998554
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=266.90 Aligned_cols=256 Identities=20% Similarity=0.411 Sum_probs=221.9
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG 229 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~ 229 (501)
....|+|+.+ |...+++|..|++|+||| ...+.+.+.+|++.|.|+.| +.+.+++|+
T Consensus 196 ~skgVYClQY---------------DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy------d~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQY---------------DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY------DERVIVSGS 254 (499)
T ss_pred cCCceEEEEe---------------cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec------cceEEEecC
Confidence 4567999998 568999999999999999 66788999999999999997 456999999
Q ss_pred CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784 230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309 (501)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
.|.+|++||.++++ ++.++.+|...|..+.|+. .++++++.|.++.+||+.....+
T Consensus 255 SDsTvrvWDv~tge------~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i--------------- 310 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGE------PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI--------------- 310 (499)
T ss_pred CCceEEEEeccCCc------hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH---------------
Confidence 99999999999998 5899999999999999973 49999999999999999876421
Q ss_pred eeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc
Q 010784 310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 388 (501)
...+.+.+|...|+.+.| +.+++++++.|. |++|++.+.+.+ .++
T Consensus 311 --------------------------t~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efv------Rtl 356 (499)
T KOG0281|consen 311 --------------------------TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFV------RTL 356 (499)
T ss_pred --------------------------HHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeee------hhh
Confidence 123456789999999999 566999999999 999999997655 999
Q ss_pred cCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 389 DGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 389 ~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.+|...|-|+.+. ++++++||.|.+|++||++.|.+++.+ .+|..-|.++.| |.+.|++|++| |.|++||
T Consensus 357 ~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~cLRvL-----eGHEeLvRciRF--d~krIVSGaYD--GkikvWd 426 (499)
T KOG0281|consen 357 NGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVL-----EGHEELVRCIRF--DNKRIVSGAYD--GKIKVWD 426 (499)
T ss_pred hcccccceehhcc-CeEEEecCCCceEEEEeccccHHHHHH-----hchHHhhhheee--cCceeeecccc--ceEEEEe
Confidence 9999999888764 379999999999999999999999999 677888999999 78899999977 9999999
Q ss_pred ccCCc----------------------------cceeecCCCCceeeecccCCCCC
Q 010784 469 FSNAT----------------------------CPVLKHEVQNDSKFWGPQCYSDT 496 (501)
Q Consensus 469 ~~~~~----------------------------~~~~s~~~d~~~~~w~~~~~~~~ 496 (501)
+..+. ..+++.+.|.++-+|++..+.+.
T Consensus 427 l~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 427 LQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence 76433 34678899999999998766543
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-37 Score=277.04 Aligned_cols=278 Identities=17% Similarity=0.274 Sum_probs=250.6
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
+...|.++.++|...+++++-..|.+.||+.++ ...++.+.-..-+|.+..|.+ ..+.+++|+.|.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfia-------------RknWiv~GsDD~ 77 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIA-------------RKNWIVTGSDDM 77 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccc-ceeeeeeeecccchhhheeee-------------ccceEEEecCCc
Confidence 455689999999999999999999999999998 488888888889999999998 789999999999
Q ss_pred ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.|+||+ ++..+..|.+|..-|+|++.+ |...+++|+|.|-+|++||.+.+= .+.+++.+|+..|.+++|
T Consensus 78 ~IrVfnynt~ekV~~FeAH~DyIR~iavH----Pt~P~vLtsSDDm~iKlW~we~~w-----a~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVH----PTLPYVLTSSDDMTIKLWDWENEW-----ACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEEEecccceeeEEeeccccceeeeeec----CCCCeEEecCCccEEEEeeccCce-----eeeeEEcCcceEEEEEEe
Confidence 999998 889999999999999999998 788899999999999999998764 388999999999999999
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP 346 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 346 (501)
.|.+.+.+++++-|++|+||.+.+.. +..++.+|..
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~--------------------------------------------~nfTl~gHek 184 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPH--------------------------------------------PNFTLEGHEK 184 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCC--------------------------------------------Cceeeecccc
Confidence 99999999999999999999998753 3357789999
Q ss_pred cEEEEEEcCCC--cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 347 ILHSFSIMPSK--SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 347 ~v~~v~~~~~~--~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
.|+++.+-+.| -+|++|++|. |+|||.++.+++ +++.||...|..+.|+|. .++++||.||+++||+..+
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV------~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV------QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHH------HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 99999998754 6999999999 999999997665 999999999999999999 9999999999999999999
Q ss_pred cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
.++..++. ....++.+++-.+.++.++.|. +.|.|.+
T Consensus 259 y~lE~tLn-----~gleRvW~I~~~k~~~~i~vG~--Deg~i~v 295 (794)
T KOG0276|consen 259 YKLEKTLN-----YGLERVWCIAAHKGDGKIAVGF--DEGSVTV 295 (794)
T ss_pred eehhhhhh-----cCCceEEEEeecCCCCeEEEec--cCCcEEE
Confidence 99888884 3456899999888888888886 4565543
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=287.33 Aligned_cols=283 Identities=22% Similarity=0.365 Sum_probs=247.6
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
...+.|+.|+++|.++++++.++.+++|+..+. + ..+.+.+|...|++++|+| ++.++++++.|
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~h~~~v~~~~fs~-------------d~~~l~s~s~D 224 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI-KSNLLRELSGHTRGVSDVAFSP-------------DGSYLLSGSDD 224 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccc-cchhhccccccccceeeeEECC-------------CCcEEEEecCC
Confidence 566999999999999999999999999999764 4 7778899999999999999 88999999999
Q ss_pred CceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 188 HSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 188 g~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
++|+||| .+..++++++|...|++++|+ +.++++++|+.|++|++||++++. +...+.+|.+.|+++
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~----p~g~~i~Sgs~D~tvriWd~~~~~------~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS----PDGNLLVSGSDDGTVRIWDVRTGE------CVRKLKGHSDGISGL 294 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEec----CCCCEEEEecCCCcEEEEeccCCe------EEEeeeccCCceEEE
Confidence 9999999 457899999999999999997 788999999999999999999966 699999999999999
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 344 (501)
+|.+ ++++|++++.|+.|++||+.++... ....+..+
T Consensus 295 ~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~------------------------------------------~~~~~~~~ 331 (456)
T KOG0266|consen 295 AFSP-DGNLLVSASYDGTIRVWDLETGSKL------------------------------------------CLKLLSGA 331 (456)
T ss_pred EECC-CCCEEEEcCCCccEEEEECCCCcee------------------------------------------eeecccCC
Confidence 9997 8889999999999999999988521 11222333
Q ss_pred CC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE---EEecCC-eEEEEecCCCcEEE
Q 010784 345 KP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ---LHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 345 ~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~---l~~~~~-~~l~~gs~dg~i~i 417 (501)
.. .++++.|+|++.++++++.|+ +++||++.+... ..+.+|...+.+ ...++. .++++|+.|+.|++
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV------GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce------eeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 33 599999999999999999998 999999997765 777788775433 344566 99999999999999
Q ss_pred EeCCCcccccccccCCCCCC-CcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 418 WETDTGMLANSLLCNYPEEA-DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
||+.++..+..+ .+| ...+..++++|...++++++.+.|+.+++|...
T Consensus 406 ~~~~s~~~~~~l-----~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 406 WDSSSGGILQRL-----EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EeCCccchhhhh-----cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999 556 778999999999999999997778999999754
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-36 Score=239.30 Aligned_cols=264 Identities=17% Similarity=0.271 Sum_probs=222.7
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEecccccc-cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY-YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
...|+.+.+.|++.+||+++. ..|++||+.+++. ++.++.+|+..|+++.|.. +|+.++||+.||
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-------------dgrWMyTgseDg 105 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-------------DGRWMYTGSEDG 105 (311)
T ss_pred ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEee-------------cCeEEEecCCCc
Confidence 445999999999999999986 6799999998754 8999999999999999998 899999999999
Q ss_pred ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
+++||| ...+.+.+ .|.++|+++..+ |+...|++|..+|.|++||+..... ....+.....+|.++.+
T Consensus 106 t~kIWdlR~~~~qR~~-~~~spVn~vvlh----pnQteLis~dqsg~irvWDl~~~~c-----~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRNY-QHNSPVNTVVLH----PNQTELISGDQSGNIRVWDLGENSC-----THELIPEDDTSIQSLTV 175 (311)
T ss_pred eEEEEeccCcccchhc-cCCCCcceEEec----CCcceEEeecCCCcEEEEEccCCcc-----ccccCCCCCcceeeEEE
Confidence 999999 43444444 478999999997 7888999999999999999998753 22333445578999999
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP 346 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 346 (501)
.| ++.+++.+...|..++|++-+.+.... .+++..++.|++
T Consensus 176 ~~-dgsml~a~nnkG~cyvW~l~~~~~~s~--------------------------------------l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 176 MP-DGSMLAAANNKGNCYVWRLLNHQTASE--------------------------------------LEPVHKFQAHNG 216 (311)
T ss_pred cC-CCcEEEEecCCccEEEEEccCCCcccc--------------------------------------ceEhhheecccc
Confidence 98 899999999999999999987533221 244567888999
Q ss_pred cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc
Q 010784 347 ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM 424 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~ 424 (501)
.+..+.+|||+++|++++.|. ++||+....- +.-..+++|...+...+||.+ ++|++|+.|+.+++|++..++
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~-----kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFF-----KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCce-----eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 999999999999999999999 9999998861 123678899999999999999 999999999999999999999
Q ss_pred cccccccCCCCCCCcceeeeEe
Q 010784 425 LANSLLCNYPEEADISTGCSAM 446 (501)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~ 446 (501)
.++.+ .+|.....+++.
T Consensus 292 ~v~qy-----~gh~K~~vc~~l 308 (311)
T KOG0315|consen 292 EVRQY-----QGHHKAAVCVAL 308 (311)
T ss_pred eeeec-----CCcccccEEEEe
Confidence 99999 455555555554
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.3e-36 Score=254.48 Aligned_cols=308 Identities=19% Similarity=0.305 Sum_probs=245.4
Q ss_pred HHHHHHhhhccccCCeeeEEEe---cCCC---------CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc
Q 010784 87 LARRIALLQFKFVDPLDVCFYS---VAKP---------HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA 154 (501)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~---~~~~---------i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~ 154 (501)
+..+.....+..+..+...|.. .|++ |+++... +.++.+|++||.+++||.. ++..+++.||.+
T Consensus 70 L~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~ 145 (423)
T KOG0313|consen 70 LDEHLEEKGISSEEILEIEYVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTG 145 (423)
T ss_pred HHHHHHHcCcChhheeEEEEEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC--CceEEEEecCCc
Confidence 4444455555555555544333 2333 4444444 7999999999999999988 688999999999
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C----CceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K----GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~----~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
+|.+++|.-.+ +....|++++.|.++++|. . -+.++..+||...|-++... ++|..+++|
T Consensus 146 ~ik~v~~v~~n----------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~----~sgtr~~Sg 211 (423)
T KOG0313|consen 146 PIKSVAWVIKN----------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD----SSGTRFCSG 211 (423)
T ss_pred ceeeeEEEecC----------CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec----CCCCeEEee
Confidence 99999886521 1334799999999999995 2 23344556999999999985 899999999
Q ss_pred eCCCcEEEEeccCCCc-------------------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784 229 GEDATVRLWSLSSSGK-------------------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS 289 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~ 289 (501)
+.|.+|++|+..+... .....++.++.+|+.+|.++.|++ ...+++++.|.+|+.||+.
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEee
Confidence 9999999999332111 223456778899999999999984 6789999999999999999
Q ss_pred CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-E
Q 010784 290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-A 368 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i 368 (501)
++...... . ....++++..+|..++|++|+.|. |
T Consensus 290 tg~~~~~~--------------------------------------------~-~~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 290 TGGLKSTL--------------------------------------------T-TNKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred cccceeee--------------------------------------------e-cCcceeEeecccccceeeecCCCCce
Confidence 98643221 1 256789999999999999999999 9
Q ss_pred EEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc-cccccccCCCCCCCcceeeeE
Q 010784 369 MTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM-LANSLLCNYPEEADISTGCSA 445 (501)
Q Consensus 369 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~ 445 (501)
++||.+++.- ....+++.+|.+.|.++.|+|. ..|++|+.|+++++||+++.+ ++..+ .+|...|.++.
T Consensus 325 rl~DPR~~~g---s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-----~~h~DKvl~vd 396 (423)
T KOG0313|consen 325 RLWDPRTGDG---SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-----AGHNDKVLSVD 396 (423)
T ss_pred eecCCCCCCC---ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-----ccCCceEEEEe
Confidence 9999998753 2446788999999999999998 889999999999999999977 89999 56788899999
Q ss_pred eeccccEEEEeecCCCceEEEeecc
Q 010784 446 MAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 446 ~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
|. ++..|++|| .|..|+++.-.
T Consensus 397 W~-~~~~IvSGG--aD~~l~i~~~~ 418 (423)
T KOG0313|consen 397 WN-EGGLIVSGG--ADNKLRIFKGS 418 (423)
T ss_pred cc-CCceEEecc--CcceEEEeccc
Confidence 96 566999999 55999998654
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.4e-37 Score=284.99 Aligned_cols=246 Identities=24% Similarity=0.409 Sum_probs=217.7
Q ss_pred cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc------------------------------
Q 010784 149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS------------------------------ 197 (501)
Q Consensus 149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~------------------------------ 197 (501)
+..-...++|..|++ ++.+||.|..|-.|++|. +.+
T Consensus 374 ~~nt~~~v~ca~fSd-------------dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSD-------------DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred EEEcCCcceeEeecC-------------CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 333445677777777 889999999999999996 210
Q ss_pred --eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 198 --CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 198 --~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
..+++.+|.++|....|+ |+.++|++++.|+++|+|.+.+.. ++..+++|..+|..+.|+| .+-+|+
T Consensus 441 ~~~~~~L~GH~GPVyg~sFs----Pd~rfLlScSED~svRLWsl~t~s------~~V~y~GH~~PVwdV~F~P-~GyYFa 509 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFS----PDRRFLLSCSEDSSVRLWSLDTWS------CLVIYKGHLAPVWDVQFAP-RGYYFA 509 (707)
T ss_pred CceeEEeecCCCceeeeeec----ccccceeeccCCcceeeeecccce------eEEEecCCCcceeeEEecC-CceEEE
Confidence 123466899999999997 899999999999999999999977 5788899999999999998 799999
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP 355 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~ 355 (501)
|+|.|++-++|.....++ .+.+.+|-..|.|+.|+|
T Consensus 510 tas~D~tArLWs~d~~~P--------------------------------------------lRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKP--------------------------------------------LRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred ecCCCceeeeeecccCCc--------------------------------------------hhhhcccccccceEEECC
Confidence 999999999999876543 355678999999999999
Q ss_pred CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784 356 SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY 433 (501)
Q Consensus 356 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 433 (501)
+..|+++||.|. +|+||+.++..+ +.|.||.++|++++|+|+ +++++|+.||.|++||+.+++.+..+
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~G~~V------RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l---- 615 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVSTGNSV------RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL---- 615 (707)
T ss_pred cccccccCCCCceEEEEEcCCCcEE------EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh----
Confidence 999999999999 999999998765 899999999999999999 99999999999999999999999999
Q ss_pred CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784 434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
.+|.+.|.++.||.||..||+|| .|..|++||+......
T Consensus 616 -~~Ht~ti~SlsFS~dg~vLasgg--~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 616 -KGHTGTIYSLSFSRDGNVLASGG--ADNSVRLWDLTKVIEL 654 (707)
T ss_pred -hcccCceeEEEEecCCCEEEecC--CCCeEEEEEchhhccc
Confidence 67788999999999999999999 6699999998765544
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-36 Score=237.45 Aligned_cols=279 Identities=17% Similarity=0.180 Sum_probs=240.4
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.+..++.+|..+.++.+|+|.++++.|+++++|+...+ .+++++.+|...|..++.+. |+..|++|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~-------------Dnskf~s~ 77 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSS-------------DNSKFASC 77 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccc-------------cccccccC
Confidence 34567778999999999999999999999999999986 99999999999999999988 88999999
Q ss_pred eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+.|..|.+|| +|+.++.+.+|.+.|+.++|. .+...+++|+.|.++++||-++... .+++.+......|.
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN----eesSVv~SgsfD~s~r~wDCRS~s~----ePiQildea~D~V~ 149 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN----EESSVVASGSFDSSVRLWDCRSRSF----EPIQILDEAKDGVS 149 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEec----CcceEEEeccccceeEEEEcccCCC----CccchhhhhcCcee
Confidence 9999999999 999999999999999999995 8889999999999999999988653 47888888888999
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 342 (501)
++.+. +..+++|+.||+++.||++.++... .
T Consensus 150 Si~v~---~heIvaGS~DGtvRtydiR~G~l~s----------------------------------------------D 180 (307)
T KOG0316|consen 150 SIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS----------------------------------------------D 180 (307)
T ss_pred EEEec---ccEEEeeccCCcEEEEEeecceeeh----------------------------------------------h
Confidence 99885 4589999999999999999885311 1
Q ss_pred cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE--EecCC-eEEEEecCCCcEEEE
Q 010784 343 ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL--HMDPY-KIVTGGRDDLRINIW 418 (501)
Q Consensus 343 ~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~~~-~~l~~gs~dg~i~iw 418 (501)
-...+|+++.|+++++..++++-|. +++.|-.+++.+ ..+++|.+.-+.+ +++.. ..+++||.||.|.+|
T Consensus 181 y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL------~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 181 YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL------KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHH------HHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 1367899999999999999999888 999999998766 8899998765544 45555 899999999999999
Q ss_pred eCCCcccccccccCCCCCCCcc-eeeeEeeccccEEEEeecCCCceEEEee
Q 010784 419 ETDTGMLANSLLCNYPEEADIS-TGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
|+.....+..+. .+... +..+.++|.-..++++.. +.+.+|-
T Consensus 255 dLvd~~~~sk~~-----~~~~v~v~dl~~hp~~~~f~~A~~---~~~~~~~ 297 (307)
T KOG0316|consen 255 DLVDETQISKLS-----VVSTVIVTDLSCHPTMDDFITATG---HGDLFWY 297 (307)
T ss_pred Eeccceeeeeec-----cCCceeEEeeecccCccceeEecC---Cceecee
Confidence 999999998884 33444 889999998877777652 4555554
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-36 Score=279.40 Aligned_cols=335 Identities=15% Similarity=0.188 Sum_probs=266.0
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
|......+..++|+|...++.++-..|.|++||.+=+ .++..|.+|.++|..++|+| ++.+|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~-------------~qplFVSGG 70 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHP-------------TQPLFVSGG 70 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhh-hHHhhhhccCCccceeeecC-------------CCCeEEecC
Confidence 3344455889999999999999999999999999874 88899999999999999999 889999999
Q ss_pred CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
.|..|+||+ +.+|+.++.+|-.-|..+.|+ +.-.+++|+|.|.+|+||+..++. ++..+.+|+..|.|
T Consensus 71 DDykIkVWnYk~rrclftL~GHlDYVRt~~FH----heyPWIlSASDDQTIrIWNwqsr~------~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFH----HEYPWILSASDDQTIRIWNWQSRK------CIAVLTGHNHYVMC 140 (1202)
T ss_pred CccEEEEEecccceehhhhccccceeEEeecc----CCCceEEEccCCCeEEEEeccCCc------eEEEEecCceEEEe
Confidence 999999999 889999999999999999998 788899999999999999999987 69999999999999
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 343 (501)
..|+| ....++++|-|.+|+|||+..-+...... .+..-.+.... ...-++-....-..+.+.+
T Consensus 141 AqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~p-------g~~e~~~~~~~--------~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 141 AQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAP-------GSLEDQMRGQQ--------GNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred eccCC-ccceEEEecccceEEEEeecchhccCCCC-------CCchhhhhccc--------cchhhcCCcCeeeeeeecc
Confidence 99998 67799999999999999997543211100 00000000000 0000010001112356789
Q ss_pred CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
|...|+-++|+|.-.++++|++|+ |++|.+...+. =.+.+..+|.+.|.++-|+|. .++.+.|.|++|+|||+.
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccc----eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 999999999999999999999999 99999987552 345788999999999999999 888888999999999999
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee-ecC-----CCCceeeecccC
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL-KHE-----VQNDSKFWGPQC 492 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~-s~~-----~d~~~~~w~~~~ 492 (501)
..+.+++|. ........++-+|..+++++| +|+-+.||.++......+ .++ .|..++.+++..
T Consensus 281 kRt~v~tfr-----rendRFW~laahP~lNLfAAg---HDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t 349 (1202)
T KOG0292|consen 281 KRTSVQTFR-----RENDRFWILAAHPELNLFAAG---HDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRT 349 (1202)
T ss_pred cccceeeee-----ccCCeEEEEEecCCcceeeee---cCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccc
Confidence 999999994 346778999999999999888 456666777664333222 111 255556665554
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.4e-37 Score=261.61 Aligned_cols=263 Identities=17% Similarity=0.265 Sum_probs=225.9
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG 229 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~ 229 (501)
-+.+|..+.|.| +|+.|++|+..|.+.+|+ .-.....++.|..+|+++.|+ .++.+++||+
T Consensus 95 vkc~V~~v~WtP-------------eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws----~~g~wmiSgD 157 (464)
T KOG0284|consen 95 VKCPVNVVRWTP-------------EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWS----HNGTWMISGD 157 (464)
T ss_pred cccceeeEEEcC-------------CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEc----cCCCEEEEcC
Confidence 456799999999 899999999999999999 222334457899999999998 8999999999
Q ss_pred CCCcEEEEeccCCCccccccceeeccCCC-CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784 230 EDATVRLWSLSSSGKRGQQALKATLYGHE-KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
.+|.|++|+.+... +..+..|. ..|++++|+| +...|++++.||+|+|||....+..
T Consensus 158 ~gG~iKyWqpnmnn-------Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee-------------- 215 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNN-------VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE-------------- 215 (464)
T ss_pred CCceEEecccchhh-------hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchh--------------
Confidence 99999999998764 45555554 8999999999 6678999999999999998876432
Q ss_pred ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784 309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~ 387 (501)
..+.+|.-.|.+++|+|...++++|+.|+ |++||.+++.++ .+
T Consensus 216 ------------------------------~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl------~t 259 (464)
T KOG0284|consen 216 ------------------------------RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL------AT 259 (464)
T ss_pred ------------------------------heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh------hh
Confidence 34578999999999999999999999999 999999998776 99
Q ss_pred ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEE
Q 010784 388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQ 465 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~ 465 (501)
+.+|...|..+.|+|+ .+|+++|.|..++++|+++.+.++++ .+|...++++.|+|-. .+|++|+ .||.|.
T Consensus 260 lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-----r~Hkkdv~~~~WhP~~~~lftsgg--~Dgsvv 332 (464)
T KOG0284|consen 260 LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-----RGHKKDVTSLTWHPLNESLFTSGG--SDGSVV 332 (464)
T ss_pred hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-----hcchhhheeeccccccccceeecc--CCCceE
Confidence 9999999999999999 99999999999999999999999999 6788899999999965 5667777 458888
Q ss_pred Eeecc----------------------CCccceeecCCCCceeeecccCCCCC
Q 010784 466 FRDFS----------------------NATCPVLKHEVQNDSKFWGPQCYSDT 496 (501)
Q Consensus 466 ~w~~~----------------------~~~~~~~s~~~d~~~~~w~~~~~~~~ 496 (501)
.|.+. +-+..+++|+.|.++++|.-.-..|.
T Consensus 333 h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDK 385 (464)
T ss_pred EEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCc
Confidence 88755 23345679999999999987655553
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=244.41 Aligned_cols=289 Identities=16% Similarity=0.238 Sum_probs=253.7
Q ss_pred eEEEecCCCCceEEee---CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 104 VCFYSVAKPHDHILLD---NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~---~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
..+..|..||-.++|+ |+|-+|++++.|+.--+-+-++| .-+-++.||++.|++..+.. +...
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-dwigtfeghkgavw~~~l~~-------------na~~ 73 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-DWIGTFEGHKGAVWSATLNK-------------NATR 73 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-CcEEeeeccCcceeeeecCc-------------hhhh
Confidence 4567788899999998 79999999999999888888885 88999999999999999987 6778
Q ss_pred EEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784 181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
-++++.|-+-+||| +|..+..|. |..-|.+++|+ .+.++|++|+.+..+||||++..+. +...+.+|+
T Consensus 74 aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~----~ds~~lltgg~ekllrvfdln~p~A-----pp~E~~ght 143 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFS----QDSNYLLTGGQEKLLRVFDLNRPKA-----PPKEISGHT 143 (334)
T ss_pred hhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEec----ccchhhhccchHHHhhhhhccCCCC-----CchhhcCCC
Confidence 89999999999999 898998886 89999999997 8999999999999999999998876 678889999
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
+.|..+.|.. ..+.+++++.|++|++||.++++.+..+
T Consensus 144 g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL----------------------------------------- 181 (334)
T KOG0278|consen 144 GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSL----------------------------------------- 181 (334)
T ss_pred CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEE-----------------------------------------
Confidence 9999999996 6677888899999999999998654332
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
. ...+|+++.++++|++|.++...+|.+||..+...+ ..++- ...|.+...+|+ .++++|+.|..++.
T Consensus 182 ---~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l------Ks~k~-P~nV~SASL~P~k~~fVaGged~~~~k 250 (334)
T KOG0278|consen 182 ---E-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL------KSYKM-PCNVESASLHPKKEFFVAGGEDFKVYK 250 (334)
T ss_pred ---e-cCCCCcceeeccCCCEEEEecCceeEEeccccccce------eeccC-ccccccccccCCCceEEecCcceEEEE
Confidence 2 367889999999999998887777999999986554 55443 456889999999 88888899999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
||..+++.+..+. .+|.++|.++.|+|||...++|| +||+|++|....++..
T Consensus 251 fDy~TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGS--EDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 251 FDYNTGEEIGSYN----KGHFGPVHCVRFSPDGELYASGS--EDGTIRLWQTTPGKTY 302 (334)
T ss_pred EeccCCceeeecc----cCCCCceEEEEECCCCceeeccC--CCceEEEEEecCCCch
Confidence 9999999988863 68899999999999999999999 7899999998887764
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-34 Score=263.87 Aligned_cols=281 Identities=22% Similarity=0.374 Sum_probs=242.9
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
+..|..+|+++++++++.++++|+.++.+.+|+..++ +....+.+|...+..+.|+| +++++++++
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~ 70 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASA-------------DGTYLASGS 70 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecCCcceeEEEECC-------------CCCEEEEEc
Confidence 3467788999999999999999999999999999874 67788889999999999999 778999999
Q ss_pred CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
.||.|++|| .++.+..+..|...|.++.|+ +++.++++++.||.|++||+.+++ ....+..|...|.+
T Consensus 71 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~i~~ 140 (289)
T cd00200 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFS----PDGRILSSSSRDKTIKVWDVETGK------CLTTLRGHTDWVNS 140 (289)
T ss_pred CCCeEEEEEcCcccceEEEeccCCcEEEEEEc----CCCCEEEEecCCCeEEEEECCCcE------EEEEeccCCCcEEE
Confidence 999999999 446778888899999999997 667888888889999999998765 46667789999999
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 343 (501)
+.++| ++.++++++.|+.|++||+++++. +..+..
T Consensus 141 ~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~--------------------------------------------~~~~~~ 175 (289)
T cd00200 141 VAFSP-DGTFVASSSQDGTIKLWDLRTGKC--------------------------------------------VATLTG 175 (289)
T ss_pred EEEcC-cCCEEEEEcCCCcEEEEEcccccc--------------------------------------------ceeEec
Confidence 99997 577888888799999999986532 223445
Q ss_pred CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
|...+.++.|+|+++.+++++.++ |++||++.++.. ..+..|...+.+++|+|+ .++++++.||.|++||+.
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL------GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCcee------cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 777899999999998888888777 999999986544 667678889999999998 888888779999999999
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
+++.+..+ ..|...+.+++|++++++|++++ .+|.|++|+
T Consensus 250 ~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iw~ 289 (289)
T cd00200 250 TGECVQTL-----SGHTNSVTSLAWSPDGKRLASGS--ADGTIRIWD 289 (289)
T ss_pred CceeEEEc-----cccCCcEEEEEECCCCCEEEEec--CCCeEEecC
Confidence 98888888 45677899999999999999999 669999996
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.4e-34 Score=294.24 Aligned_cols=292 Identities=16% Similarity=0.205 Sum_probs=234.4
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-------ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-------YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
+...|.+++|+++|.++|+|+.|+.|+||+..... .....+. +...|.+++|++. ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~------------~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY------------IKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC------------CCCEE
Confidence 55569999999999999999999999999975310 1122233 3467999999873 57899
Q ss_pred EEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 182 VTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 182 ~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
++++.||+|++|| +++.+..+.+|.+.|++++|+ ..++.+|++|+.||.|++||+.++. .+..+..+ .
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~---p~~~~~L~Sgs~Dg~v~iWd~~~~~------~~~~~~~~-~ 618 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS---SADPTLLASGSDDGSVKLWSINQGV------SIGTIKTK-A 618 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEc---CCCCCEEEEEcCCCEEEEEECCCCc------EEEEEecC-C
Confidence 9999999999999 677888899999999999997 2478899999999999999998875 35555544 5
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.|.++.|.+.++.+|++|+.||.|++||+++.+. .+.
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-------------------------------------------~~~ 655 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-------------------------------------------PLC 655 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-------------------------------------------cce
Confidence 7899999766789999999999999999986531 123
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
.+.+|...|.++.|. ++.++++++.|+ |++||++.........++..+.+|...+++++|+|+ .++++|+.|+.|++
T Consensus 656 ~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i 734 (793)
T PLN00181 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV 734 (793)
T ss_pred EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence 455788999999997 678899999888 999999864321113456889999999999999999 99999999999999
Q ss_pred EeCCCcccccccccC--------CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 418 WETDTGMLANSLLCN--------YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 418 wd~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
|+......+..+... ....+...|.+++|+|++..|++|+ .+|.|++|++
T Consensus 735 w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~--~dG~I~i~~~ 792 (793)
T PLN00181 735 YHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN--STGNIKILEM 792 (793)
T ss_pred EECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec--CCCcEEEEec
Confidence 998766544332211 0123456799999999999999999 6699999985
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5e-34 Score=231.99 Aligned_cols=270 Identities=21% Similarity=0.304 Sum_probs=224.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC-----ceeeec-cCCCCceEEEEeeec
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG-----SCQRCF-KGHNGPVSTLSDKLL 217 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-----~~~~~~-~~h~~~v~~l~~s~~ 217 (501)
..++.+++|++.|..++|+|. .|..|+||+.|+.|++|++. .+...+ .+|+..|++++|+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~------------~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-- 70 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPG------------KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-- 70 (312)
T ss_pred eeEEeecCCCCcEEEEEeccC------------CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec--
Confidence 345678999999999999992 26799999999999999933 233333 3799999999998
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
|.|++|++|+.|.++.||.-..++ ..++..+.+|...|.+++|++ ++++|++++.|+.|-+|.+.....
T Consensus 71 --p~g~~La~aSFD~t~~Iw~k~~~e----fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE---- 139 (312)
T KOG0645|consen 71 --PHGRYLASASFDATVVIWKKEDGE----FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE---- 139 (312)
T ss_pred --CCCcEEEEeeccceEEEeecCCCc----eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc----
Confidence 899999999999999999877554 457899999999999999997 899999999999999999885421
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS 376 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~ 376 (501)
.+....++.|...|..+.|+|...+|++++.|+ |++|+-...
T Consensus 140 -------------------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d 182 (312)
T KOG0645|consen 140 -------------------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD 182 (312)
T ss_pred -------------------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC
Confidence 234567888999999999999999999999888 999987742
Q ss_pred CCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 377 QDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
.. ..+++++.+|.+.|.+++|++. .-+++++.|++|+||-..+ .+. ..|+..+..+.|. ...|++
T Consensus 183 dd---W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~----~~~sr~~Y~v~W~--~~~IaS 248 (312)
T KOG0645|consen 183 DD---WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLS----GMHSRALYDVPWD--NGVIAS 248 (312)
T ss_pred CC---eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccc----hhcccceEeeeec--ccceEe
Confidence 21 5667999999999999999998 7788889999999998652 221 3456788999998 568999
Q ss_pred eecCCCceEEEeecc----------------------------C-CccceeecCCCCceeeeccc
Q 010784 456 ASYGEPGLLQFRDFS----------------------------N-ATCPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 456 ~~~d~~g~i~~w~~~----------------------------~-~~~~~~s~~~d~~~~~w~~~ 491 (501)
++ +|+.|+++.-+ + ...++++++.||.+++|.+.
T Consensus 249 ~g--gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 249 GG--GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cc--CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99 66999998622 2 25678899999999999874
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=239.07 Aligned_cols=279 Identities=19% Similarity=0.268 Sum_probs=233.7
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
...|+..|+.+.|+|+|.++|+|+.|..|.+|+.....+-..++++|++.|..+.|.+ |++.+++++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-------------d~s~i~S~g 109 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-------------DGSHILSCG 109 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-------------CCCEEEEec
Confidence 4557777999999999999999999999999997655566778899999999999999 899999999
Q ss_pred CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
.|.+|+.|| +|++++.+++|..-|+++.-+ .....++.+|+.||++++||+++.+. ++++. ...++++
T Consensus 110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~---rrg~~lv~SgsdD~t~kl~D~R~k~~------~~t~~-~kyqltA 179 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPS---RRGPQLVCSGSDDGTLKLWDIRKKEA------IKTFE-NKYQLTA 179 (338)
T ss_pred CCceEEEEecccceeeehhccccceeeecCcc---ccCCeEEEecCCCceEEEEeecccch------hhccc-cceeEEE
Confidence 999999999 999999999999999998743 34456788999999999999998763 55553 4567899
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCC----c
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTM----Q 336 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~----~ 336 (501)
+.|.. .+..+.+|+-|+.|++||++......... .+...+..+...+.+.++.+. ..+++||++-. +
T Consensus 180 v~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~ls-----Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 180 VGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLS-----GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEecc-cccceeeccccCceeeeccccCcceEEee-----cccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 99985 77889999999999999998875433221 556677778777777776654 48999999753 4
Q ss_pred eEeeeccCC----CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784 337 KVMTPAICK----PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR 410 (501)
Q Consensus 337 ~~~~~~~~~----~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs 410 (501)
++..+.+|. .....++|+|+++.+.+|+.|+ +++||...... +..+.||.+.|++++|+|. .++.+++
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~------lyklpGh~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI------LYKLPGHYGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE------EEEcCCcceeEEEeeecCCCcEEEEec
Confidence 466777653 3456889999999999999999 99999988554 4899999999999999999 9999999
Q ss_pred CCCcEEEEe
Q 010784 411 DDLRINIWE 419 (501)
Q Consensus 411 ~dg~i~iwd 419 (501)
.|.+|++=+
T Consensus 328 sdk~i~lge 336 (338)
T KOG0265|consen 328 SDKTIYLGE 336 (338)
T ss_pred cCceeEeec
Confidence 999998743
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-35 Score=258.41 Aligned_cols=287 Identities=15% Similarity=0.248 Sum_probs=245.2
Q ss_pred eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 104 VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
..+..|.+.|+++.|.| .+.++++|+.|+.|+||++-...++++++.||..+|.+++|+. +|..|+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-------------~g~~fL 274 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-------------CGTSFL 274 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-------------cCCeee
Confidence 45666888899999999 8999999999999999999887799999999999999999999 899999
Q ss_pred EeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 183 TSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 183 s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
|++.|+.|++|| +|+++..+. ....++|+.|+ |++ +.+++|+.|+.|+.||+++++ .++.+..|-+
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~----pd~~n~fl~G~sd~ki~~wDiRs~k------vvqeYd~hLg 343 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFH----PDNQNIFLVGGSDKKIRQWDIRSGK------VVQEYDRHLG 343 (503)
T ss_pred eeecceeeeeeccccceEEEEEe-cCCCceeeecC----CCCCcEEEEecCCCcEEEEeccchH------HHHHHHhhhh
Confidence 999999999999 888888886 45678899997 455 899999999999999999987 5888999999
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.|..+.|.+ ++.++++.+.|+++++|+.+.+-.+...
T Consensus 344 ~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i------------------------------------------ 380 (503)
T KOG0282|consen 344 AILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNI------------------------------------------ 380 (503)
T ss_pred heeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhh------------------------------------------
Confidence 999999997 8889999999999999999876432211
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCcE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLRI 415 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~i 415 (501)
...+.....++..+|++.++++-+.|+ |.++.+...-. ......+++|.. .-..+.|||+ .+|++|+.||.+
T Consensus 381 -~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v 456 (503)
T KOG0282|consen 381 -ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV 456 (503)
T ss_pred -cchhhccCcceecCCCCCeehhhccCceEEEEecccccc---cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence 111233456888999999999999888 99999765432 233467788854 4556789999 999999999999
Q ss_pred EEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEee
Q 010784 416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~ 468 (501)
.+||.++-+++..+ ..|...+..+.|+|.. ..+|+++.| |.|++|+
T Consensus 457 ~~wdwkt~kl~~~l-----kah~~~ci~v~wHP~e~Skvat~~w~--G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKL-----KAHDQPCIGVDWHPVEPSKVATCGWD--GLIKIWD 503 (503)
T ss_pred EEeechhhhhhhcc-----ccCCcceEEEEecCCCcceeEecccC--ceeEecC
Confidence 99999999999999 6678899999999965 578888854 9999996
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=231.29 Aligned_cols=279 Identities=18% Similarity=0.278 Sum_probs=228.7
Q ss_pred CceEEeeC---CcEEEeecCC-----eeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 113 HDHILLDN---NDIFSTQGSS-----IQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 113 i~~~~~~~---~~~~~~~g~~-----d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
-.++.|+| +...+|++.. .|.+.|-++..+ +-+..+ -.-.+.+..++|++. ..+.++
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~-~gi~e~~s~d~~D~LfdV~Wse~------------~e~~~~ 77 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP-KGIQECQSYDTEDGLFDVAWSEN------------HENQVI 77 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCC-CCeEEEEeeecccceeEeeecCC------------CcceEE
Confidence 45677775 3444455543 577888887532 222222 234678999999986 568899
Q ss_pred EeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 183 TSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 183 s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
+++.||++++|| ...+++.++.|..+|.++.|. ...+..+++++.|++|++|+...+.. +.++.+|+.
T Consensus 78 ~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn---~~~r~~~ltsSWD~TiKLW~~~r~~S------v~Tf~gh~~ 148 (311)
T KOG0277|consen 78 AASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWN---TVRRRIFLTSSWDGTIKLWDPNRPNS------VQTFNGHNS 148 (311)
T ss_pred EEecCceEEEeccCCCCcchhHHHhhhhheEEeccc---cccceeEEeeccCCceEeecCCCCcc------eEeecCCcc
Confidence 999999999999 456788999999999999997 35677888899999999999998774 889999999
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.|....|+|..+++++++|.|+.+++||++..- +. .
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-------------------------------------------k~-~ 184 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-------------------------------------------KF-M 184 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCC-------------------------------------------ce-e
Confidence 999999999999999999999999999988641 12 2
Q ss_pred eeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcE
Q 010784 340 TPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRI 415 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i 415 (501)
.+..|...+.++.|+. +.+++++|+.|+ |++||+++-+ .++.++.+|.-.|..++|+|. .+++++|.|-++
T Consensus 185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhhhccccceE
Confidence 3667889999999997 577899999999 9999999875 458899999999999999999 999999999999
Q ss_pred EEEeCCCc-ccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEEEeec
Q 010784 416 NIWETDTG-MLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 416 ~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~~w~~ 469 (501)
+|||...+ .++.+. ..|+.-+..+.||+ +..++|+.+.| +.++||+-
T Consensus 260 riw~~~~~ds~~e~~-----~~HtEFv~g~Dws~~~~~~vAs~gWD--e~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPERQDSAIETV-----DHHTEFVCGLDWSLFDPGQVASTGWD--ELLYVWNP 308 (311)
T ss_pred Eecccccchhhhhhh-----hccceEEeccccccccCceeeecccc--cceeeecc
Confidence 99999854 445555 56778889999997 56789999966 99999973
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=245.07 Aligned_cols=283 Identities=17% Similarity=0.253 Sum_probs=234.9
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc--cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE--SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
..|...|--+.|+++|+|+|+++.|.+..+|++... .++.+++.+|..+|.-+.||| |.++|+++
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-------------DdryLlaC 287 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-------------DDRYLLAC 287 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-------------CCCeEEec
Confidence 335556889999999999999999999999987543 456889999999999999999 89999999
Q ss_pred eCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCc
Q 010784 185 SCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKP 260 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~ 260 (501)
+.|..+.+|| +|.+...+. +|...+.+.+|. |||..+++|+.|+.+..||++... ....++- ...
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~----pDg~~~V~Gs~dr~i~~wdlDgn~-------~~~W~gvr~~~ 356 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC----PDGFRFVTGSPDRTIIMWDLDGNI-------LGNWEGVRDPK 356 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEc----cCCceeEecCCCCcEEEecCCcch-------hhcccccccce
Confidence 9999999999 777776664 356789999997 899999999999999999998764 3334433 356
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT 340 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 340 (501)
|.++++.+ +++.+++.+.|..|++++.++.....
T Consensus 357 v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~--------------------------------------------- 390 (519)
T KOG0293|consen 357 VHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRG--------------------------------------------- 390 (519)
T ss_pred eEEEEEcC-CCcEEEEEecccceeeechhhhhhhc---------------------------------------------
Confidence 89999997 78888888999999999988753211
Q ss_pred eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC--eEEEEecCC--eEEEEecCCCcE
Q 010784 341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS--VTQLHMDPY--KIVTGGRDDLRI 415 (501)
Q Consensus 341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~--~~l~~gs~dg~i 415 (501)
+.....+|+++++|.+++++++.-.+. +++||+...+. +..+.||... +..-+|... .++++||.|+.|
T Consensus 391 lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l------v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL------VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH------HHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 112367899999999999999998888 99999996544 4888888654 333345443 999999999999
Q ss_pred EEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccCC
Q 010784 416 NIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 416 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
+||+..+|+++.++ .+|...|++++|+|.. .++|+|| +||+|++|.....
T Consensus 465 yIWhr~sgkll~~L-----sGHs~~vNcVswNP~~p~m~ASas--DDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 465 YIWHRISGKLLAVL-----SGHSKTVNCVSWNPADPEMFASAS--DDGTIRIWGPSDN 515 (519)
T ss_pred EEEEccCCceeEee-----cCCcceeeEEecCCCCHHHhhccC--CCCeEEEecCCcc
Confidence 99999999999999 6888999999999965 5778888 7899999987754
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=224.95 Aligned_cols=250 Identities=20% Similarity=0.293 Sum_probs=215.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+..+.+..|+++|.++.|+- +|++.++++.|.+|++|| .+.+++++.+|...|..++.+ .+
T Consensus 8 kr~~~l~~~qgaV~avryN~-------------dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s----~D 70 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV-------------DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALS----SD 70 (307)
T ss_pred hhceeecccccceEEEEEcc-------------CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccc----cc
Confidence 45677889999999999998 899999999999999999 899999999999999999986 78
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
+..+++|+.|..|.+||+.+++ ....+.+|.+.|+.++|+. +...+++|+.|.++++||.++...
T Consensus 71 nskf~s~GgDk~v~vwDV~TGk------v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-------- 135 (307)
T KOG0316|consen 71 NSKFASCGGDKAVQVWDVNTGK------VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-------- 135 (307)
T ss_pred ccccccCCCCceEEEEEcccCe------eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCC--------
Confidence 8999999999999999999998 5899999999999999995 788999999999999999998632
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
++++.+....+.|.++.. .+..|++|+.|+ +|.||++.+...
T Consensus 136 ----------------------------------ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~- 178 (307)
T KOG0316|consen 136 ----------------------------------EPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLS- 178 (307)
T ss_pred ----------------------------------CccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceee-
Confidence 445556666788999988 566899999888 999999998643
Q ss_pred CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784 381 KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG 459 (501)
Q Consensus 381 ~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 459 (501)
...- ..+|+++.|+++ ....+++.|+++++.|-.+|+++..+.+|... ..-..++++....++++|+
T Consensus 179 -----sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~---eykldc~l~qsdthV~sgS-- 246 (307)
T KOG0316|consen 179 -----SDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM---EYKLDCCLNQSDTHVFSGS-- 246 (307)
T ss_pred -----hhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc---eeeeeeeecccceeEEecc--
Confidence 3333 468999999999 77777789999999999999999999655432 2334567888888999999
Q ss_pred CCceEEEeeccCCcc
Q 010784 460 EPGLLQFRDFSNATC 474 (501)
Q Consensus 460 ~~g~i~~w~~~~~~~ 474 (501)
+||.|++||+.....
T Consensus 247 EDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 247 EDGKVYFWDLVDETQ 261 (307)
T ss_pred CCceEEEEEecccee
Confidence 889999999876554
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-34 Score=241.87 Aligned_cols=281 Identities=17% Similarity=0.253 Sum_probs=233.0
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec--------ccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--------SDHKARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
++....+.|..|+|||.|+++|+.||.|.||+.-+| ++.+-+ .-|.++|.|+.|+. |.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSR-------------Ds 275 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSR-------------DS 275 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecc-------------cH
Confidence 344566899999999999999999999999999886 544443 34788999999999 88
Q ss_pred cEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
..+++|+.||.|+||. +|.|++.|. +|+..|+|+.|+ .++..+++++.|.++++.-+.+++ ++..++
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS----rD~SqiLS~sfD~tvRiHGlKSGK------~LKEfr 345 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS----RDNSQILSASFDQTVRIHGLKSGK------CLKEFR 345 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc----cCcchhhcccccceEEEeccccch------hHHHhc
Confidence 9999999999999998 999999986 899999999998 899999999999999999999987 589999
Q ss_pred CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC-CcEEEEEcCC
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-SSVVTIDLRT 334 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~ 334 (501)
+|...|+...|.+ ++..+++++.||+|++|+..+.+++..+........-..+.-+.-++...+++.. +++++.++.
T Consensus 346 GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q- 423 (508)
T KOG0275|consen 346 GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ- 423 (508)
T ss_pred CccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-
Confidence 9999999999996 8999999999999999999999776655444322222222223334444444433 477777764
Q ss_pred CceEeeecc---CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe
Q 010784 335 MQKVMTPAI---CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG 409 (501)
Q Consensus 335 ~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g 409 (501)
++.++.+.. ..+...+...+|.|.++.+.++|+ ++.|...+++.. .++..|...|..++-+|. +++++-
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE------~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE------RTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee------eeeecccccccccccCcccchhhhh
Confidence 455555543 245567788999999999999999 999999998876 888899999999999999 999999
Q ss_pred cCCCcEEEEe
Q 010784 410 RDDLRINIWE 419 (501)
Q Consensus 410 s~dg~i~iwd 419 (501)
+.||.+++|.
T Consensus 498 sEDgllKLWk 507 (508)
T KOG0275|consen 498 SEDGLLKLWK 507 (508)
T ss_pred cccchhhhcC
Confidence 9999999995
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-34 Score=255.85 Aligned_cols=247 Identities=17% Similarity=0.297 Sum_probs=223.8
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+..+.+..|++.|.++.|+| ....++++-.+|.|.||| +...++.+....-+|++..|. ..
T Consensus 4 ~~krk~~~rSdRVKsVd~HP-------------tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfi----aR 66 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHP-------------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI----AR 66 (794)
T ss_pred hhhhHhhccCCceeeeecCC-------------CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheee----ec
Confidence 44556777999999999999 789999999999999999 777888998889999999997 78
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
.+.+++|+.|..|+||+.++.++ +..+..|...|++|+.+| ...+++++|.|-.|++||.+.+
T Consensus 67 knWiv~GsDD~~IrVfnynt~ek------V~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~---------- 129 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEK------VKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE---------- 129 (794)
T ss_pred cceEEEecCCceEEEEeccccee------eEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCc----------
Confidence 89999999999999999999985 999999999999999999 5668999999999999998865
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
..+.+++.+|...|.+++|+|. .+.+++++-|+ |++|.+.+...
T Consensus 130 ---------------------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~- 175 (794)
T KOG0276|consen 130 ---------------------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP- 175 (794)
T ss_pred ---------------------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-
Confidence 2345789999999999999995 78999999888 99999998654
Q ss_pred CCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
..++++|...|+++.+-+. .++++|+.|.+|+|||.++.++++++ .+|...|..+.|+|.-..|++|
T Consensus 176 -----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-----eGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 176 -----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-----EGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred -----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-----hcccccceEEEecCCCcEEEEe
Confidence 4999999999999999765 79999999999999999999999999 6888999999999999999999
Q ss_pred ecCCCceEEEeecc
Q 010784 457 SYGEPGLLQFRDFS 470 (501)
Q Consensus 457 ~~d~~g~i~~w~~~ 470 (501)
+ +||++++|+-.
T Consensus 246 s--EDGTvriWhs~ 257 (794)
T KOG0276|consen 246 S--EDGTVRIWNSK 257 (794)
T ss_pred c--CCccEEEecCc
Confidence 9 78999999843
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=251.90 Aligned_cols=270 Identities=18% Similarity=0.272 Sum_probs=222.9
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGD 219 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~ 219 (501)
.+.++++.||+..|+++.|.|. .+.+|++++.|+.|+||+ .+.++++|.+|..+|.+++|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~------------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s---- 267 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPK------------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN---- 267 (503)
T ss_pred HhheeeccCCccccchhhhccc------------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc----
Confidence 5778899999999999999995 689999999999999998 689999999999999999997
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
.+|..++|++.|+.|++||.++|.. ...+. ....++++.|.|++.+.+++|+.|+.|+.||+++++.++
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---- 336 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQV------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---- 336 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceE------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH----
Confidence 8999999999999999999999973 55554 355678999999777999999999999999999986543
Q ss_pred ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
.+..|-+.|..+.|-++|+.+++.++++ ++||+.+.+-.
T Consensus 337 ----------------------------------------eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 337 ----------------------------------------EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred ----------------------------------------HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence 3455788999999999999999999999 99999998654
Q ss_pred CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc---ccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784 379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG---MLANSLLCNYPEEADISTGCSAMAVSGCRIV 454 (501)
Q Consensus 379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 454 (501)
. + .....+.-..-++..+|+ .++++-+.|+.|.+|.+... .....+.+|.. .+--..+.|||||++|+
T Consensus 377 i---k--~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v---aGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 377 I---K--NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV---AGYSCQVDFSPDGRTLC 448 (503)
T ss_pred c---h--hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec---cCceeeEEEcCCCCeEE
Confidence 3 1 112223345678889999 99999899999999997643 23345544332 23345689999999999
Q ss_pred EeecCCCceEEEeeccCCc----------------------cceeecCCCCceeeec
Q 010784 455 TASYGEPGLLQFRDFSNAT----------------------CPVLKHEVQNDSKFWG 489 (501)
Q Consensus 455 s~~~d~~g~i~~w~~~~~~----------------------~~~~s~~~d~~~~~w~ 489 (501)
+|. .+|.+.+||+.+-. ..+++++-||.|++|+
T Consensus 449 SGd--sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 SGD--SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eec--CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999 66999999965321 2367889999999995
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=260.44 Aligned_cols=270 Identities=24% Similarity=0.364 Sum_probs=223.8
Q ss_pred eecccC-CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc--eeeeccCCCCceEEEEeeecCCCC
Q 010784 147 ATLSDH-KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 147 ~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
..+.+| ...|.++.|++ +|+.+++++.|+.+++|+ ..+ .++.+.+|...|++++|+ ++
T Consensus 152 ~~~~~~~~~sv~~~~fs~-------------~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs----~d 214 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSP-------------DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFS----PD 214 (456)
T ss_pred eeecccccCceEEEEEcC-------------CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEEC----CC
Confidence 344444 77899999999 899999999999999998 444 667778999999999998 89
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
+.++++|+.|++|++||+..... .+.++++|...|++++|+| .++++++|+.|++|++||+++++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~-----~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~--------- 279 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGR-----NLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGE--------- 279 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCe-----EEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCe---------
Confidence 99999999999999999955433 6899999999999999998 55999999999999999998863
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
.+..+.+|.+.|++++|++++++|++++.|+ |++||+.++...
T Consensus 280 -----------------------------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~- 323 (456)
T KOG0266|consen 280 -----------------------------------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL- 323 (456)
T ss_pred -----------------------------------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-
Confidence 4567788999999999999999999999888 999999998721
Q ss_pred CCCCcccccCcccC--eEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 381 KPQPMAELDGHVGS--VTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 381 ~~~~~~~~~~h~~~--v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
++..+.++... +++++|+|+ .++++++.|+.+++||+..+..+..+..+... ...+.....++.++++++|+
T Consensus 324 ---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~ 398 (456)
T KOG0266|consen 324 ---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGS 398 (456)
T ss_pred ---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEe
Confidence 22555555554 999999999 88888889999999999999999999654422 12455556688999999999
Q ss_pred cCCCceEEEeeccCCc----------------------cceeecC--CCCceeeeccc
Q 010784 458 YGEPGLLQFRDFSNAT----------------------CPVLKHE--VQNDSKFWGPQ 491 (501)
Q Consensus 458 ~d~~g~i~~w~~~~~~----------------------~~~~s~~--~d~~~~~w~~~ 491 (501)
.|+.|.+|+..++. ..+++.+ .|+.+++|..+
T Consensus 399 --~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 399 --EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 77999999976422 2344444 67888888754
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-32 Score=240.48 Aligned_cols=281 Identities=20% Similarity=0.285 Sum_probs=236.6
Q ss_pred CCCceEEeeCCc--EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 111 KPHDHILLDNND--IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 111 ~~i~~~~~~~~~--~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
.+|++++|+|.. .+.++++ ..+.+|+..+ ....+++....+.|.++.|.. ||.+|+.|+..|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~-~~~~k~~srFk~~v~s~~fR~-------------DG~LlaaGD~sG 90 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVT-RSVRKTFSRFKDVVYSVDFRS-------------DGRLLAAGDESG 90 (487)
T ss_pred CcceeEecCCCCCCceEEecc--cEEEEEecch-hhhhhhHHhhccceeEEEeec-------------CCeEEEccCCcC
Confidence 459999999854 4455554 5788888887 477788888899999999998 899999999999
Q ss_pred ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.|+|+| +...++.+.+|+.+|..+.|+| .++..+++|+.|+.+++||+.+.. ....+.+|+..|.+.++
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~---~d~t~l~s~sDd~v~k~~d~s~a~------v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSP---QDNTMLVSGSDDKVVKYWDLSTAY------VQAELSGHTDYVRCGDI 161 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecc---cCCeEEEecCCCceEEEEEcCCcE------EEEEecCCcceeEeecc
Confidence 999999 3346788999999999999984 677899999999999999999875 35688999999999999
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP 346 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 346 (501)
+|.++.+++|||.||.|++||++.... .+..+ .|..
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~-------------------------------------------~v~el-nhg~ 197 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTS-------------------------------------------RVVEL-NHGC 197 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCc-------------------------------------------eeEEe-cCCC
Confidence 998889999999999999999997621 11222 3889
Q ss_pred cEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 347 ILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
+|.++.+-|.|.++++++...+++||+.++... +..+..|...|+|+.+..+ .-|.+|+-|+.|++||+.+.+.
T Consensus 198 pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql-----l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAGGNSVKVWDLTTGGQL-----LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred ceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee-----hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE
Confidence 999999999999999999888999999977543 4555669999999999988 6666667999999999999999
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+..+. -.++|.+++.+|+++.++.|. .+|.+.+-+...++
T Consensus 273 v~s~~------~~~pvLsiavs~dd~t~viGm--snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 273 VHSWK------YPGPVLSIAVSPDDQTVVIGM--SNGLVSIRRREVKK 312 (487)
T ss_pred EEeee------cccceeeEEecCCCceEEEec--ccceeeeehhhccc
Confidence 99884 367899999999999999999 56888877544433
No 53
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=236.27 Aligned_cols=307 Identities=15% Similarity=0.215 Sum_probs=252.3
Q ss_pred HHHHHHHHHHh-hhccccCCeeeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccccccceecccCCcceeEEE
Q 010784 83 REAYLARRIAL-LQFKFVDPLDVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMR 160 (501)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~ 160 (501)
..+|.+..... ..-.+..|....+..|..+|.|++=+|+. ..+++|+.||.|++||+.. ..+..++..|.+.|..|.
T Consensus 38 ~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 38 AREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGIC 116 (433)
T ss_pred HHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeecccCceeeEE
Confidence 35555554433 33445677777888999999999999988 8899999999999999998 588999999999999999
Q ss_pred eeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec
Q 010784 161 LFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL 239 (501)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~ 239 (501)
+.. ..+++++.|.+|+.|. .+..++++.+ ...+..+.-+ ..++.++|++.+ |.|||.
T Consensus 117 v~~---------------~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~----~~~~~FaTcGe~--i~IWD~ 174 (433)
T KOG0268|consen 117 VTQ---------------TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHH----RKNSVFATCGEQ--IDIWDE 174 (433)
T ss_pred ecc---------------cceEEecCCcceeeeeccCCcceeeec-cccccccccc----cccccccccCce--eeeccc
Confidence 963 7899999999999998 6666676653 4456666654 567788998864 999999
Q ss_pred cCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 240 SSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
.... ++..+.-....|.++.|+|....+|++|+.|+.|.+||+++.+++....
T Consensus 175 ~R~~------Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--------------------- 227 (433)
T KOG0268|consen 175 QRDN------PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--------------------- 227 (433)
T ss_pred ccCC------ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee---------------------
Confidence 8765 5778877788899999999888899999999999999999987644321
Q ss_pred EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784 320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL 398 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 398 (501)
. ...-+.|+|+|.+-.+++|++|. ++.||++..+ .++....+|...|.++
T Consensus 228 -------------------~-----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 228 -------------------L-----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHVSAVMDV 278 (433)
T ss_pred -------------------e-----eccccceecCccccceeeccccccceehhhhhhc-----ccchhhcccceeEEEe
Confidence 1 23346799999888899999999 9999999875 4578899999999999
Q ss_pred EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.|+|. +-+++||.|.+|+||.+..+.-...+. ......|.++.||.|.+++++|| +|+.|++|.-...++
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh----tkRMq~V~~Vk~S~Dskyi~SGS--dd~nvRlWka~Asek 349 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH----TKRMQHVFCVKYSMDSKYIISGS--DDGNVRLWKAKASEK 349 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcchhhhh----HhhhheeeEEEEeccccEEEecC--CCcceeeeecchhhh
Confidence 99999 888889999999999999887665553 22356799999999999999999 789999998654443
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-31 Score=275.80 Aligned_cols=279 Identities=15% Similarity=0.186 Sum_probs=221.0
Q ss_pred eeeEEEEecccccccce-----ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCc--------
Q 010784 131 IQNIKIDNFLSESYYRA-----TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS-------- 197 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-------- 197 (501)
+|..++|+.... .... .+..|.+.|++++|+| ++++|++|+.|+.|+|||...
T Consensus 457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~-------------dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDR-------------DGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECC-------------CCCEEEEEeCCCEEEEEECCccccccccc
Confidence 566777776642 2222 2446999999999999 899999999999999998211
Q ss_pred --eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 198 --CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 198 --~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
....+. +...|.+++|++ ..+.+|++++.||+|++||+.++. .+..+.+|...|++++|+|.++.+|+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~---~~~~~las~~~Dg~v~lWd~~~~~------~~~~~~~H~~~V~~l~~~p~~~~~L~ 592 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNS---YIKSQVASSNFEGVVQVWDVARSQ------LVTEMKEHEKRVWSIDYSSADPTLLA 592 (793)
T ss_pred ccceEEec-ccCceeeEEecc---CCCCEEEEEeCCCeEEEEECCCCe------EEEEecCCCCCEEEEEEcCCCCCEEE
Confidence 112222 456789999972 457899999999999999998875 47788899999999999976788999
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc-
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM- 354 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~- 354 (501)
+|+.||.|++||++++..+ ..+. +...+.++.|+
T Consensus 593 Sgs~Dg~v~iWd~~~~~~~--------------------------------------------~~~~-~~~~v~~v~~~~ 627 (793)
T PLN00181 593 SGSDDGSVKLWSINQGVSI--------------------------------------------GTIK-TKANICCVQFPS 627 (793)
T ss_pred EEcCCCEEEEEECCCCcEE--------------------------------------------EEEe-cCCCeEEEEEeC
Confidence 9999999999999876432 1222 23568889995
Q ss_pred CCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCc------cccc
Q 010784 355 PSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTG------MLAN 427 (501)
Q Consensus 355 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~------~~~~ 427 (501)
+++.++++|+.|+ |++||+++.+. ++..+.+|...|.++.|.+..++++++.|++|++||+..+ ..+.
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 5699999999998 99999987542 2467789999999999986677777889999999999743 4566
Q ss_pred ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC----------------------------------Cc
Q 010784 428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN----------------------------------AT 473 (501)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~----------------------------------~~ 473 (501)
++ .+|...+..++|++++.+|++|+ .|+.|++|+... .+
T Consensus 703 ~~-----~gh~~~i~~v~~s~~~~~lasgs--~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 703 SF-----MGHTNVKNFVGLSVSDGYIATGS--ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred EE-----cCCCCCeeEEEEcCCCCEEEEEe--CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 66 56788899999999999999999 669999998532 22
Q ss_pred cceeecCCCCceeeecc
Q 010784 474 CPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 474 ~~~~s~~~d~~~~~w~~ 490 (501)
..+++++.||.+++|++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 34668888999999976
No 55
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-31 Score=243.48 Aligned_cols=311 Identities=19% Similarity=0.275 Sum_probs=235.2
Q ss_pred CCceEEee-CCcEEEeecCCeeeEEEEecccccccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 112 PHDHILLD-NNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 112 ~i~~~~~~-~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
.++.+..+ .+|++++. +.-..+.+||+++| +..+.+ ..-+..|+|+.-++ +.-+||.|..||
T Consensus 23 N~~~~~~~~~~Gr~va~-~a~E~vn~WdlRtg-e~~~~l~~~~~k~evt~l~~~~-------------d~l~lAVGYaDG 87 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAV-SALEQVNIWDLRTG-EIEKKLILLKKKAEVTCLRSSD-------------DILLLAVGYADG 87 (888)
T ss_pred ceeEEEeecCCCcEEEE-eccccEeEEeeecc-hhhhhhhhhcccceEEEeeccC-------------CcceEEEEecCc
Confidence 34555555 34666654 33457899999997 222222 23446899999888 788899999999
Q ss_pred ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 189 SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 189 ~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.|+||+ .+....++.+|...|+++.|. ..|..|+||+.|+.|.+||+-.... ...+.+|...|+..-|
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd----~~G~rlaSGskDt~IIvwDlV~E~G------l~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFD----KIGTRLASGSKDTDIIVWDLVGEEG------LFRLRGHKDSITQALF 157 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEc----ccCceEeecCCCccEEEEEecccee------eEEeecchHHHhHHhc
Confidence 999999 457788999999999999995 8999999999999999999987653 7889999999999888
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-CCcEEEE---------------
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTI--------------- 330 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~--------------- 330 (501)
.. +.+.+++.+.|+.|++||+.+..+..... .+.+.++.+...++.++.+. ++.+.+|
T Consensus 158 ~~-~~~~lvS~sKDs~iK~WdL~tqhCf~Thv-----d~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~ 231 (888)
T KOG0306|consen 158 LN-GDSFLVSVSKDSMIKFWDLETQHCFETHV-----DHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYI 231 (888)
T ss_pred cC-CCeEEEEeccCceEEEEecccceeeeEEe-----cccceEEEEEEecceEEEEecCCceEEEEeecccccccccccc
Confidence 84 68899999999999999999875432110 12222222222221111111 1122222
Q ss_pred --------------------------------------------------------------------------------
Q 010784 331 -------------------------------------------------------------------------------- 330 (501)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (501)
T Consensus 232 s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i 311 (888)
T KOG0306|consen 232 STKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEI 311 (888)
T ss_pred eeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHH
Confidence
Q ss_pred --------------------------------------EcCCCce---------EeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784 331 --------------------------------------DLRTMQK---------VMTPAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 331 --------------------------------------d~~~~~~---------~~~~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
.++.... -..+.+|...|.+++++.+...+++|
T Consensus 312 ~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 312 KRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred HHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence 2221001 13455788889999999999899998
Q ss_pred cCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784 364 GIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG 442 (501)
Q Consensus 364 ~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 442 (501)
+.+.+++|+..+.+++ .++.. +.+.+..|-|. ++++.|...|.+.+||+.+...+.+. ..|.+.|.
T Consensus 392 a~~SikiWn~~t~kci------RTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti-----~AHdgaIW 458 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCI------RTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI-----RAHDGAIW 458 (888)
T ss_pred CCCcEEEEEccCccee------EEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh-----hcccccee
Confidence 8888999999997765 77763 47888999999 89999999999999999999988888 57888999
Q ss_pred eeEeeccccEEEEeecCCCceEEEee
Q 010784 443 CSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 443 ~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.++.+||++.+++|| .|.+|++||
T Consensus 459 si~~~pD~~g~vT~s--aDktVkfWd 482 (888)
T KOG0306|consen 459 SISLSPDNKGFVTGS--ADKTVKFWD 482 (888)
T ss_pred eeeecCCCCceEEec--CCcEEEEEe
Confidence 999999999999999 559999998
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.6e-31 Score=240.21 Aligned_cols=263 Identities=26% Similarity=0.494 Sum_probs=219.9
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
..++++|.++|++++|+| ++++|++++.||.|++|+ .+.....+..|...+..+.|+ ++++
T Consensus 2 ~~~~~~h~~~i~~~~~~~-------------~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~ 64 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSP-------------DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS----ADGT 64 (289)
T ss_pred chHhcccCCCEEEEEEcC-------------CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEEC----CCCC
Confidence 356789999999999999 789999999999999999 555677788899999999997 7788
Q ss_pred EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT 303 (501)
Q Consensus 224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 303 (501)
++++++.||.|++||+.+++ ....+..|...+.++.|++ ++.++++++.|+.|.+||+++++.
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~---------- 127 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE------CVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC---------- 127 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc------ceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE----------
Confidence 99999999999999999865 3667778998999999997 567888888899999999986532
Q ss_pred ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784 304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP 382 (501)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 382 (501)
...+..|...+.++.|+|++.++++++.++ |++||+++++..
T Consensus 128 ----------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--- 170 (289)
T cd00200 128 ----------------------------------LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV--- 170 (289)
T ss_pred ----------------------------------EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc---
Confidence 233446788899999999999999999666 999999876544
Q ss_pred CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784 383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP 461 (501)
Q Consensus 383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 461 (501)
..+..|...+.++.|+|+ +.+++++.|+.|++||+.+++.+..+ ..|...+.+++|++++.++++++ .+
T Consensus 171 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~--~~ 240 (289)
T cd00200 171 ---ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-----RGHENGVNSVAFSPDGYLLASGS--ED 240 (289)
T ss_pred ---eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-----hhcCCceEEEEEcCCCcEEEEEc--CC
Confidence 677788889999999999 56666678999999999998888887 35667899999999988888887 56
Q ss_pred ceEEEeeccC---------------------CccceeecCCCCceeeec
Q 010784 462 GLLQFRDFSN---------------------ATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 462 g~i~~w~~~~---------------------~~~~~~s~~~d~~~~~w~ 489 (501)
|.|++|++.. .+..+++++.|+.+++|+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999653 224455677777777774
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-32 Score=219.57 Aligned_cols=295 Identities=14% Similarity=0.180 Sum_probs=235.6
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.+..|..|++.|.++.+|.+|.+++.|.+..||-..+| +.+-++.||++.|+|++..- +...++||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~-------------~s~~liTG 70 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDW-------------DSKHLITG 70 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecC-------------Ccceeeec
Confidence 35678999999999999999999999999999998775 88899999999999999987 78999999
Q ss_pred eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-----CCcEEEEeccCCCc-cccccceeeccC
Q 010784 185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-----DATVRLWSLSSSGK-RGQQALKATLYG 256 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-----dg~i~iwd~~~~~~-~~~~~~~~~~~~ 256 (501)
+.|.++++|| +|+++..++ ...+|..+.|+ .+|++++.... .+.|.++|++.... .....+...+..
T Consensus 71 SAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~----~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWK-TNSPVKRVDFS----FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred cccceeEEEEcCCCcEEEEee-cCCeeEEEeec----cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 9999999999 899998887 57789999997 78888776643 46799999985431 112235667777
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
+...++.+-|.| -+..|++|..||.|..||+++++.
T Consensus 146 ~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~------------------------------------------- 181 (327)
T KOG0643|consen 146 PDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKE------------------------------------------- 181 (327)
T ss_pred Cccceeeeeecc-cCCEEEEecCCCcEEEEEcccCce-------------------------------------------
Confidence 889999999998 788999999999999999998743
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCC
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDL 413 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg 413 (501)
.+...+.|...|+.++++++..++++++.|. -++||.++.+.+ .++.. ..+|++.+++|. .++..|+.+-
T Consensus 182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~------Kty~t-e~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL------KTYTT-ERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred eeechhhhccccccccccCCcceEEecccCccceeeeccceeeE------EEeee-cccccceecccccceEEecCCcee
Confidence 2233455888999999999999999999999 999999996554 66654 779999999997 5555544332
Q ss_pred -cEEEEeCCCccccccc-------ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 414 -RINIWETDTGMLANSL-------LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 414 -~i~iwd~~~~~~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
.|.-=+.+.|+.-..| +.+..++|-++|++++|+|+|+..++|+ +||.|++..|..
T Consensus 255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG--EDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG--EDGYVRLHHFDS 318 (327)
T ss_pred eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC--CCceEEEEEecc
Confidence 1222222233221111 2223378999999999999999999999 789999987664
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=215.24 Aligned_cols=276 Identities=16% Similarity=0.215 Sum_probs=229.7
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCC
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
+.+++|.+.|.+++|+- +|..|++|+.|+++.+|+ ..+.. ...++|.+.|-.++|+| +..
T Consensus 14 r~~~~~~~~v~Sv~wn~-------------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~---~~~ 77 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-------------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDP---KHP 77 (313)
T ss_pred HHhhhhhhcceEEEEcc-------------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCC---CCC
Confidence 56789999999999998 899999999999999998 22222 34568999999999984 667
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM 302 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 302 (501)
..|++++.|.+|++||++.++. ........+.+ -+.|+| ++.+++.++.|..|.+.|.++.+.....+.
T Consensus 78 d~~atas~dk~ir~wd~r~~k~------~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~--- 146 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKC------TARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQF--- 146 (313)
T ss_pred cceEEecCCceEEEEEeccCcE------EEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcc---
Confidence 7999999999999999999874 66665555555 478998 788999999999999999998865433221
Q ss_pred eecCCCceeeecCCCeEEEEeC-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 303 TSVPGVPVDMKCHESMLYIASG-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
.....-.+...+++..++..| +.|.+......+++..++.|.....+|.|+|+|+++|+|+.|. +.+||+...-+
T Consensus 147 -~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-- 223 (313)
T KOG1407|consen 147 -KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-- 223 (313)
T ss_pred -cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--
Confidence 111222233345566667777 6999999999999999999999999999999999999999999 99999998544
Q ss_pred CCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784 381 KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG 459 (501)
Q Consensus 381 ~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 459 (501)
++.+..+.-+|..+.|+.+ ++||++|.|..|-|=++++|..+..+. +.++...++|+|...+||.++.|
T Consensus 224 ----~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~------~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 224 ----ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP------CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ----heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee------ccCCceeEEecCCCceeeEEecC
Confidence 4888888999999999999 999999999999999999999998884 46788999999999999999876
Q ss_pred CCc
Q 010784 460 EPG 462 (501)
Q Consensus 460 ~~g 462 (501)
.++
T Consensus 294 k~~ 296 (313)
T KOG1407|consen 294 KDG 296 (313)
T ss_pred CCC
Confidence 443
No 59
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.8e-31 Score=223.41 Aligned_cols=310 Identities=16% Similarity=0.142 Sum_probs=242.9
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
..+.+|..|++.|.+++.+| +.++++||+.|..-.||+ ++.....+.+|+..|+++.|+ .+
T Consensus 55 dS~~tF~~H~~svFavsl~P-------------~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs----hd 117 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHP-------------NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS----HD 117 (399)
T ss_pred cceeehhhcCCceEEEEeCC-------------CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc----cC
Confidence 44678999999999999999 789999999999999999 778888999999999999997 89
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
|.+|+||+.+|.|+||+..++.. ...+...-..+.-+.|+| .+..|++|+.||.+-+|.+.++.....
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv----- 185 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGE------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKV----- 185 (399)
T ss_pred ceEEEecCCCccEEEEEcccCce------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeE-----
Confidence 99999999999999999999874 455555566788899998 788999999999999999988532211
Q ss_pred ceecCCCceeeecCCCeEEEE---eCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784 302 MTSVPGVPVDMKCHESMLYIA---SGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS 376 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~ 376 (501)
...+...+.+-.+.|++..+. .+++|++|++.+++++..+... .....++.++..+..++.|+.++ +++-+..++
T Consensus 186 ~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 186 MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 112334444444444443333 3469999999999999887743 44567888888999999999888 888888777
Q ss_pred CCCCCCC--CcccccCcccCeEEEE---ecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 377 QDAVKPQ--PMAELDGHVGSVTQLH---MDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 377 ~~~~~~~--~~~~~~~h~~~v~~l~---~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
+.+.-.. .......+...+.++. ++.. .++|+|+.||+|.|||+...++...+ .|...|..+.|-+ .
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c------~he~~V~~l~w~~-t 338 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC------EHEDGVTKLKWLN-T 338 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec------cCCCceEEEEEcC-c
Confidence 6541111 1111123444455554 4555 99999999999999999888777666 4677899999998 7
Q ss_pred cEEEEeecCCCceEEEeecc---------------------CCccceeecCCCCceeeeccc
Q 010784 451 CRIVTASYGEPGLLQFRDFS---------------------NATCPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w~~~---------------------~~~~~~~s~~~d~~~~~w~~~ 491 (501)
.+|++++ .+|.|+.||.+ +..++++++|.|++.++|+++
T Consensus 339 ~~l~t~c--~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 DYLLTAC--ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeec--cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8999999 56999999954 455667899999999999864
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.5e-31 Score=227.47 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=221.5
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG 229 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~ 229 (501)
-|.+.|.++... +..++||++||.+++|| .|+++..+.+|.++|.+++|. ..++....|++++
T Consensus 103 ~hdDWVSsv~~~---------------~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v-~~n~~~~~fvsas 166 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---------------SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWV-IKNSSSCLFVSAS 166 (423)
T ss_pred cchhhhhhhccc---------------CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEE-ecCCccceEEEec
Confidence 477788887765 48999999999999999 999999999999999999986 3344445799999
Q ss_pred CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784 230 EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309 (501)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
.|.++++|..+.+.. .......-.||...|.+++..+ ++..+++|+.|..|++|+..+... ...+..... ....
T Consensus 167 ~Dqtl~Lw~~~~~~~--~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~-rrk~- 240 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGEN--KVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEE-DELESSSNR-RRKK- 240 (423)
T ss_pred CCceEEEEEecCchh--hhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCcc-ccccccchh-hhhh-
Confidence 999999999988764 2223444459999999999986 889999999999999999332211 000000000 0000
Q ss_pred eeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc
Q 010784 310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL 388 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 388 (501)
.-+-=...++.++.++.+|..+|.++.|++ ...+++++.|. |+.||+.+++.. .++
T Consensus 241 ----------------~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~------~~~ 297 (423)
T KOG0313|consen 241 ----------------QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK------STL 297 (423)
T ss_pred ----------------hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce------eee
Confidence 000001123456788899999999999987 77889999888 999999998765 555
Q ss_pred cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc---cccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCce
Q 010784 389 DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM---LANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGL 463 (501)
Q Consensus 389 ~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~ 463 (501)
.+ ...++++..+|. +++++|+.|..+++||.+++. ..++| .+|.+.|.++.|+|... +|++|+ .|++
T Consensus 298 ~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~-----~gH~nwVssvkwsp~~~~~~~S~S--~D~t 369 (423)
T KOG0313|consen 298 TT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL-----IGHKNWVSSVKWSPTNEFQLVSGS--YDNT 369 (423)
T ss_pred ec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee-----ecchhhhhheecCCCCceEEEEEe--cCCe
Confidence 54 567999999999 999999999999999998863 33455 68899999999999775 567777 5599
Q ss_pred EEEeeccCCc---------------------cceeecCCCCceeeeccc
Q 010784 464 LQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 464 i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~ 491 (501)
+++||++... ..+++|+.|.+++++.-.
T Consensus 370 ~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 370 VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 9999987544 357799999999998654
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=251.47 Aligned_cols=297 Identities=16% Similarity=0.147 Sum_probs=213.0
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcC---cccccCCCCc--CcEEE
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHET---SLFRSEPQRT--ENVLV 182 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~---~~~~~~~~~~--~~~l~ 182 (501)
.|...|-++.|++||+|||+|+.|+.|+||.+... +. +.-+.+.-.++.+.-.... |......... ....-
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~-e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIES-ER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEecc-ch---hcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 56677999999999999999999999999998752 11 1122222222222110000 0000000001 11122
Q ss_pred EeeCCCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC
Q 010784 183 TSSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 183 s~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
.+.....+.+-+ ..+++..|.+|.+.|..+.|+ ..++|++++.|.+||+|++.... ++..|. |
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-----Kn~fLLSSSMDKTVRLWh~~~~~------CL~~F~-H 408 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-----KNNFLLSSSMDKTVRLWHPGRKE------CLKVFS-H 408 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccc-----cCCeeEeccccccEEeecCCCcc------eeeEEe-c
Confidence 233333333322 456788899999999999996 67899999999999999999876 577665 9
Q ss_pred CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 258 EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
...|+|++|+|.|.++|++|+-||.|+||++...+.+.
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~------------------------------------------ 446 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD------------------------------------------ 446 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe------------------------------------------
Confidence 99999999999999999999999999999998764321
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC----CCcccccCcccCeEEEEecCC---eEEEEe
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP----QPMAELDGHVGSVTQLHMDPY---KIVTGG 409 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~----~~~~~~~~h~~~v~~l~~~~~---~~l~~g 409 (501)
...-...|++++|.|||++.+.|+-+| +++|+....+..... ..-+.. .|. .|+.+.+.|. ++|++
T Consensus 447 ---W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~-~~~-rITG~Q~~p~~~~~vLVT- 520 (712)
T KOG0283|consen 447 ---WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK-QGK-RITGLQFFPGDPDEVLVT- 520 (712)
T ss_pred ---ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc-cCc-eeeeeEecCCCCCeEEEe-
Confidence 112247799999999999999999888 999999876543100 000111 123 7999999876 58888
Q ss_pred cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 410 RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 410 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+.|..|+|+|.++..++..|.+... ...-....|+.||++|++++ +|..|++|+.....
T Consensus 521 SnDSrIRI~d~~~~~lv~KfKG~~n---~~SQ~~Asfs~Dgk~IVs~s--eDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHKFKGFRN---TSSQISASFSSDGKHIVSAS--EDSWVYIWKNDSFN 579 (712)
T ss_pred cCCCceEEEeccchhhhhhhccccc---CCcceeeeEccCCCEEEEee--cCceEEEEeCCCCc
Confidence 5999999999999999999975432 23345568999999999999 78999999975443
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-31 Score=246.77 Aligned_cols=258 Identities=20% Similarity=0.298 Sum_probs=222.9
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..|..|.+||..++|+|.+.++++|+.|..|+||+.++ .+++.++.||-+-|..+.|++ .-..++|
T Consensus 45 ~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~GHlDYVRt~~FHh-------------eyPWIlS 110 (1202)
T KOG0292|consen 45 DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLGHLDYVRTVFFHH-------------EYPWILS 110 (1202)
T ss_pred hhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhccccceeEEeeccC-------------CCceEEE
Confidence 45677899999999999999999999999999999998 599999999999999999998 7889999
Q ss_pred eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc----c-----------
Q 010784 184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR----G----------- 246 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~----------- 246 (501)
+|.|.+|+||| +++++..+.||..-|.|..|+ |....++|+|.|.+|||||+..-++. +
T Consensus 111 ASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh----ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~ 186 (1202)
T KOG0292|consen 111 ASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH----PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG 186 (1202)
T ss_pred ccCCCeEEEEeccCCceEEEEecCceEEEeeccC----CccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence 99999999999 899999999999999999998 78889999999999999998653220 0
Q ss_pred --------cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784 247 --------QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM 318 (501)
Q Consensus 247 --------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (501)
.......+.+|...|+-++|+| .-.++++|+.|..|++|.+...+.
T Consensus 187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKa------------------------- 240 (1202)
T KOG0292|consen 187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKA------------------------- 240 (1202)
T ss_pred chhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccc-------------------------
Confidence 1123456789999999999998 566999999999999999875431
Q ss_pred EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784 319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ 397 (501)
Q Consensus 319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 397 (501)
|. +-+..+|...|.++-|+|..+++++.++|+ |++||+...+. +++++...+....
T Consensus 241 -----------WE------vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~------v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 241 -----------WE------VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS------VQTFRRENDRFWI 297 (1202)
T ss_pred -----------ee------ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc------eeeeeccCCeEEE
Confidence 22 235678999999999999999999999999 99999998655 4888877889999
Q ss_pred EEecCC-eEEEEecCCCcEEEEeCCCccccccc
Q 010784 398 LHMDPY-KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
++.+|. +++++| .|+-+.||.++..++...+
T Consensus 298 laahP~lNLfAAg-HDsGm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 298 LAAHPELNLFAAG-HDSGMIVFKLERERPAYAV 329 (1202)
T ss_pred EEecCCcceeeee-cCCceEEEEEcccCceEEE
Confidence 999999 999997 8888999988755444333
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=215.01 Aligned_cols=246 Identities=20% Similarity=0.285 Sum_probs=212.9
Q ss_pred EEecCCCCceEEeeCC-cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 106 FYSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.+.....+-.++|+++ ...+++++-||.+++||......+++.++.|...|.++.|++. ++..++++
T Consensus 56 s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~------------~r~~~lts 123 (311)
T KOG0277|consen 56 SYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV------------RRRIFLTS 123 (311)
T ss_pred eeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc------------cceeEEee
Confidence 3444455778888864 4566788889999999987667899999999999999999985 78889999
Q ss_pred eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+.|++|++|+ .++.+.++.+|...|....|+| ..++++++++.||.+++||++...+ ...+..|...|.
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp---~~~nlfas~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil 194 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSP---HIPNLFASASGDGTLRLWDVRSPGK------FMSIEAHNSEIL 194 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCC---CCCCeEEEccCCceEEEEEecCCCc------eeEEEeccceeE
Confidence 9999999998 7788999999999999999995 6788999999999999999998764 444888999999
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 342 (501)
+..|+.-+.++++||+.|+.|+.||++..+ .++..+.
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------------------------------------------~pl~eL~ 231 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------------------------------------------TPLFELN 231 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhcc-------------------------------------------ccceeec
Confidence 999998889999999999999999999763 2345677
Q ss_pred cCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEE
Q 010784 343 ICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIW 418 (501)
Q Consensus 343 ~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iw 418 (501)
+|.-.|..+.|||. ..+|++++.|- +||||....... +.+...|++-|..+.|++. ..+|+++.|+.++||
T Consensus 232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~-----~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA-----IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred CCceEEEEEecCcchhhHhhhccccceEEecccccchhh-----hhhhhccceEEeccccccccCceeeecccccceeee
Confidence 89999999999997 67899999998 999999866433 5677789999999999987 788888899999999
Q ss_pred eC
Q 010784 419 ET 420 (501)
Q Consensus 419 d~ 420 (501)
+.
T Consensus 307 ~p 308 (311)
T KOG0277|consen 307 NP 308 (311)
T ss_pred cc
Confidence 84
No 64
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-30 Score=215.33 Aligned_cols=270 Identities=20% Similarity=0.297 Sum_probs=216.7
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCcee-eeccCCCCceEEEEeeecCCCCCCEE
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQ-RCFKGHNGPVSTLSDKLLGDGSGKIL 225 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~-~~~~~h~~~v~~l~~s~~~~~~~~~l 225 (501)
....+.|.+|+|||. ...+++.||.||+||+|+ .+..+ +....|.++|.+++|+ .+|..+
T Consensus 24 ~pP~DsIS~l~FSP~------------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws----ddgskV 87 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQ------------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS----DDGSKV 87 (347)
T ss_pred CCcccchheeEeccc------------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc----cCCceE
Confidence 345688999999994 567888999999999998 33333 4456799999999997 899999
Q ss_pred EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 226 ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
++|+.|+.+++||+.+++ ...+..|.++|..+.|.+.. -..|+|||.|++|+.||.+...+ +....
T Consensus 88 f~g~~Dk~~k~wDL~S~Q-------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p------v~t~~ 154 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQ-------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP------VATLQ 154 (347)
T ss_pred EeeccCCceEEEEccCCC-------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe------eeeee
Confidence 999999999999999985 67788899999999998632 24899999999999999998744 44457
Q ss_pred cCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeee--ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 305 VPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTP--AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
.+..+++++.-....++++++ .|.+|+++++...... ..-.-.+.+|+..++....+.|+-.+ +.|..+..+...
T Consensus 155 LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~- 233 (347)
T KOG0647|consen 155 LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK- 233 (347)
T ss_pred ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc-
Confidence 788899999988888888775 8999999877554322 12345688999999988889898555 888777764211
Q ss_pred CCCCcccccCcc---------cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 381 KPQPMAELDGHV---------GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 381 ~~~~~~~~~~h~---------~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
.-.+|+.|. ..|++|+|+|. ..|++.+.||+..+||-.....+.+. ..|..+|++++|+.+|
T Consensus 234 ---~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-----~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 234 ---DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-----ETHPQPITCCSFNRNG 305 (347)
T ss_pred ---CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-----CcCCCccceeEecCCC
Confidence 114455553 36888999999 77777779999999999888888877 5678999999999999
Q ss_pred cEEEEee
Q 010784 451 CRIVTAS 457 (501)
Q Consensus 451 ~~l~s~~ 457 (501)
.+++-+.
T Consensus 306 ~ifaYA~ 312 (347)
T KOG0647|consen 306 SIFAYAL 312 (347)
T ss_pred CEEEEEe
Confidence 9998765
No 65
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.4e-31 Score=253.16 Aligned_cols=290 Identities=19% Similarity=0.239 Sum_probs=238.2
Q ss_pred CCCCceEEeeCCcEEEeecC--CeeeEEEEecccc-----------cccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784 110 AKPHDHILLDNNDIFSTQGS--SIQNIKIDNFLSE-----------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQR 176 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~--~d~~i~vw~~~~~-----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~ 176 (501)
...|-++.++|+|..+|||+ .|+.+.||+.+.- .+.+.+...|.+.|+|+.|+|
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~------------- 79 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP------------- 79 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-------------
Confidence 33488999999999999999 8999999986531 245666788999999999999
Q ss_pred cCcEEEEeeCCCceEEec-CC-------------------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEE
Q 010784 177 TENVLVTSSCDHSIRLWW-KG-------------------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRL 236 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~-------------------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~i 236 (501)
||.+||+|+.|+.|.||. .. +++..+.+|...|..++|+ |++.+|++++.|++|.+
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws----p~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS----PDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC----CCccEEEEecccceEEE
Confidence 899999999999999997 21 2456788999999999997 89999999999999999
Q ss_pred EeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784 237 WSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE 316 (501)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (501)
||..+.+ .+..+++|.+.|..+.|.| -+++|++-+.|++|++|++.+-.......-
T Consensus 156 wn~~tF~------~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~----------------- 211 (942)
T KOG0973|consen 156 WNAKTFE------LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITK----------------- 211 (942)
T ss_pred Eccccce------eeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeecc-----------------
Confidence 9999985 6999999999999999998 789999999999999999665322111000
Q ss_pred CeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--C-Cc--EEEEecCCCCCCCCCCCcccccCc
Q 010784 317 SMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--I-GK--AMTWDIRRSQDAVKPQPMAELDGH 391 (501)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~-d~--i~iwd~~~~~~~~~~~~~~~~~~h 391 (501)
...-......+..+.|||||++|++.. . +. +.|.+-.+.+.. ..+-||
T Consensus 212 ---------------------pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~------~~LvGH 264 (942)
T KOG0973|consen 212 ---------------------PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD------KDLVGH 264 (942)
T ss_pred ---------------------chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee------eeeecC
Confidence 000001244578899999999999876 2 22 888888775543 788899
Q ss_pred ccCeEEEEecCC------e------------EEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784 392 VGSVTQLHMDPY------K------------IVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 392 ~~~v~~l~~~~~------~------------~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 453 (501)
..++.++.|+|. . ++|+||.|++|.||.....+++.... .-....|..++|+|||-.|
T Consensus 265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~----~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH----NLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh----hhhcCceeeeeEcCCCCeE
Confidence 999999999882 3 88999999999999998888776663 2346789999999999999
Q ss_pred EEeecCCCceEEEeeccCCc
Q 010784 454 VTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~~~ 473 (501)
+++| -||+|.+..|+..+
T Consensus 341 facS--~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 341 FACS--LDGTVALIHFEEKE 358 (942)
T ss_pred EEEe--cCCeEEEEEcchHH
Confidence 9999 55999999998654
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=2.9e-30 Score=209.67 Aligned_cols=271 Identities=15% Similarity=0.209 Sum_probs=228.3
Q ss_pred ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEE
Q 010784 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKIL 225 (501)
Q Consensus 148 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l 225 (501)
.++||..+++.+.|+. +|.+|++++.|.+..||- +|..+.++.+|++.|.|+... .+...+
T Consensus 5 ~l~GHERplTqiKyN~-------------eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did----~~s~~l 67 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-------------EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID----WDSKHL 67 (327)
T ss_pred ccccCccccceEEecC-------------CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec----CCccee
Confidence 4689999999999999 899999999999999996 899999999999999999984 788999
Q ss_pred EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-----CCeEEEEECCCCccccceecc
Q 010784 226 ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-----DSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~~ 300 (501)
++|+.|.++++||+.++++ +..++ ...+|..+.|++ ++++++.... .+.|.++|++....
T Consensus 68 iTGSAD~t~kLWDv~tGk~------la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~------- 132 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQ------LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS------- 132 (327)
T ss_pred eeccccceeEEEEcCCCcE------EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh-------
Confidence 9999999999999999984 55554 567899999997 6666666543 36788888875431
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
++...++...+..+...++.+-|.|-+++|++|.+++ |.+||+++++..
T Consensus 133 ------------------------------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 133 ------------------------------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred ------------------------------hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence 0112344566677789999999999999999999999 999999998654
Q ss_pred CCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
+..-+.|...|+.|+++++ .+++++|.|.+-++||+.+.++++++.. ..+|++.+++|-..+++.|+.
T Consensus 183 -----v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t------e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 183 -----VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT------ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred -----eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee------cccccceecccccceEEecCC
Confidence 5666788999999999999 9999999999999999999999999953 567999999998888877765
Q ss_pred C---------------------------------CCceEEEeeccCCccceeecCCCCceeeeccc
Q 010784 459 G---------------------------------EPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 459 d---------------------------------~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~ 491 (501)
. +=|.|.-..+.+++..++||++||.+|+..++
T Consensus 252 qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 252 QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 3 23556666788999999999999999998654
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=1.3e-31 Score=230.35 Aligned_cols=280 Identities=19% Similarity=0.280 Sum_probs=228.5
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-C--ceeeeccCCCCceEEEEeeecCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-G--SCQRCFKGHNGPVSTLSDKLLGD 219 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~--~~~~~~~~h~~~v~~l~~s~~~~ 219 (501)
.....+..|.+.|..+.|-+ +...|++|+.|..|++|+ . . ..+.++.+..++|+.+.| +
T Consensus 166 ~~~~~ld~h~gev~~v~~l~-------------~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~----d 228 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLR-------------NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDF----D 228 (459)
T ss_pred hhhhhhhccccccceeEEcc-------------CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeee----c
Confidence 55667788999999999998 678999999999999999 2 2 356778888999999999 4
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
+++..+++++.|+.+++|+++... ...++.+|+..|+++.|.. ....+++|+.|.+|++||+....+.
T Consensus 229 ~~~~~~iAas~d~~~r~Wnvd~~r------~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~----- 296 (459)
T KOG0288|consen 229 SDNKHVIAASNDKNLRLWNVDSLR------LRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCS----- 296 (459)
T ss_pred CCCceEEeecCCCceeeeeccchh------hhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhhee-----
Confidence 889999999999999999999876 5899999999999999985 4445999999999999999986433
Q ss_pred ccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
....+...+..+.+. ...+.+| ..|++||.++..+......+. .|+++..++++..+.+++.|. +.+.|+++
T Consensus 297 -kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 297 -KTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred -ccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 333333333333333 2334444 389999999999999988755 999999999999999889666 99999998
Q ss_pred CCCCCCCCCcccccC----cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 376 SQDAVKPQPMAELDG----HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~----h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
.+.. +.+.. .....+.+.|||+ .++++||.||.|+||++.++++...+.... ....|++++|+|.|
T Consensus 373 ~eI~------~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~---s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 373 KEIR------QTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST---SNAAITSLSWNPSG 443 (459)
T ss_pred ccEE------EEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC---CCcceEEEEEcCCC
Confidence 6643 33321 1234889999999 999999999999999999999988885321 22379999999999
Q ss_pred cEEEEeecCCCceEEEe
Q 010784 451 CRIVTASYGEPGLLQFR 467 (501)
Q Consensus 451 ~~l~s~~~d~~g~i~~w 467 (501)
..|++++ .++.+.+|
T Consensus 444 ~~Llsad--k~~~v~lW 458 (459)
T KOG0288|consen 444 SGLLSAD--KQKAVTLW 458 (459)
T ss_pred chhhccc--CCcceEec
Confidence 9999998 66999988
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.9e-30 Score=229.23 Aligned_cols=294 Identities=15% Similarity=0.136 Sum_probs=224.4
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc---ccceec-ccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES---YYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTEN 179 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
..+..+.+.|++++++|.|..+++|+.|..|++||+..-. +..+.+ ......|++++|++ .|+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-------------Tg~ 227 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-------------TGD 227 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-------------CCC
Confidence 4555666779999999999999999999999999987421 122222 23456799999999 788
Q ss_pred EEEEeeCCCceEEec-CCceee-------------eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784 180 VLVTSSCDHSIRLWW-KGSCQR-------------CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR 245 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd-~~~~~~-------------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 245 (501)
.|++.+..-..+|+| .|..+. .-++|...++|.+|+| .+.+.+++++.||++|+||++.....
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP---~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP---DNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc---CcccceEEecCCCcEEEEecCCchhh
Confidence 888888888999998 444332 3468999999999995 55678999999999999999886641
Q ss_pred ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784 246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
.+........+..-+++..+|++ ++..|++|..||.|.+|+.......
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~------------------------------- 352 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVR------------------------------- 352 (641)
T ss_pred eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccc-------------------------------
Confidence 11111111223445788999998 8889999999999999998543210
Q ss_pred cEEEEEcCCCceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEe
Q 010784 326 SVVTIDLRTMQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHM 400 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~ 400 (501)
.....-..|.. .|++|.||++|++|++-+.|. +++||+++.+.. +....+- ..+-+.++|
T Consensus 353 ----------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-----L~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 353 ----------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-----LNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred ----------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-----hhhhcCCCccCCCCcccc
Confidence 01122345655 899999999999999999888 999999997643 4444332 235678899
Q ss_pred cCC-eEEEEecC------CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 401 DPY-KIVTGGRD------DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 401 ~~~-~~l~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
+|+ +++++|+. .|.+.+||..+.+.++.+ .-....|..+.|+|.-+.|++|+ .||.++++
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki-----~i~~aSvv~~~WhpkLNQi~~gs--gdG~~~vy 484 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI-----DISTASVVRCLWHPKLNQIFAGS--GDGTAHVY 484 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccceeeEEEe-----cCCCceEEEEeecchhhheeeec--CCCceEEE
Confidence 999 99998753 578999999999988888 34467888999999999999999 55999876
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-29 Score=209.19 Aligned_cols=282 Identities=18% Similarity=0.214 Sum_probs=228.8
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC--
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-- 186 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-- 186 (501)
....|+++.|+++|.++++.+.|-.+++||..++ +..+++..++-.|..+.|.. ..+.++.++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-~~~~ti~skkyG~~~~~Fth-------------~~~~~i~sStk~ 78 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-KQVKTINSKKYGVDLACFTH-------------HSNTVIHSSTKE 78 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-ceeeEeecccccccEEEEec-------------CCceEEEccCCC
Confidence 4567999999999999999999999999999996 88888888888899999987 4566666666
Q ss_pred CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
|.+|+.-+ +.+.++.|.||...|++++.+ |-++.+++++.|++|++||++..+. ...+.....+| .
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~s----P~~d~FlS~S~D~tvrLWDlR~~~c------qg~l~~~~~pi--~ 146 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS----PKDDTFLSSSLDKTVRLWDLRVKKC------QGLLNLSGRPI--A 146 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEec----CCCCeEEecccCCeEEeeEecCCCC------ceEEecCCCcc--e
Confidence 88999998 889999999999999999997 7779999999999999999997653 44444444443 5
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-c
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-I 343 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~ 343 (501)
+|.| .|-++|++.....|++||++.-..- ... ...+. .
T Consensus 147 AfDp-~GLifA~~~~~~~IkLyD~Rs~dkg----PF~------------------------------------tf~i~~~ 185 (311)
T KOG1446|consen 147 AFDP-EGLIFALANGSELIKLYDLRSFDKG----PFT------------------------------------TFSITDN 185 (311)
T ss_pred eECC-CCcEEEEecCCCeEEEEEecccCCC----Cce------------------------------------eEccCCC
Confidence 8887 7888888888889999999875320 000 00011 2
Q ss_pred CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCe---EEEEecCC-eEEEEecCCCcEEEE
Q 010784 344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSV---TQLHMDPY-KIVTGGRDDLRINIW 418 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~~~-~~l~~gs~dg~i~iw 418 (501)
.....+.+.|+|||++++.++..+ +++.|.-.+... .++.++...- ...+|.|+ +++.+|+.||+|.+|
T Consensus 186 ~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~------~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw 259 (311)
T KOG1446|consen 186 DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVK------STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVW 259 (311)
T ss_pred CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEe------eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEE
Confidence 356688999999999999999888 999999998754 6666654332 57789999 999999999999999
Q ss_pred eCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 419 ETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
++++|..+..+.+ .+...+.++.|+|...++++++ ..+.+|-...
T Consensus 260 ~~~tg~~v~~~~~----~~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~~ 304 (311)
T KOG1446|consen 260 NLETGKKVAVLRG----PNGGPVSCVRFNPRYAMFVSAS----SNLVFWLPDE 304 (311)
T ss_pred EcCCCcEeeEecC----CCCCCccccccCCceeeeeecC----ceEEEEeccc
Confidence 9999999999953 2578899999999999999987 5788886553
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=214.57 Aligned_cols=288 Identities=19% Similarity=0.233 Sum_probs=229.4
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-----------------ccccceecccCCcceeEEEeeccCc
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-----------------ESYYRATLSDHKARITCMRLFPLHE 166 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-----------------~~~~~~~~~~h~~~V~~~~~~~~~~ 166 (501)
...-.|..+..+-+|++||.++|+|+.|..|+|.|++. ..-.+++|-.|.+.|+++.|+|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP--- 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP--- 182 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc---
Confidence 34556778899999999999999999999999999861 0245788889999999999999
Q ss_pred CcccccCCCCcCcEEEEeeCCCceEEec-CCc----eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC
Q 010784 167 TSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS----CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241 (501)
Q Consensus 167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~----~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~ 241 (501)
...+|++|+.|++|+++| ... ..+.|. ...+|.++.|+ |.|.+|+.|..-.++++||+++
T Consensus 183 ----------re~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfH----PsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 183 ----------RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFH----PSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred ----------hhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeec----CCCceEEEecCCCceeEEeccc
Confidence 789999999999999999 221 122333 46789999998 8999999999999999999998
Q ss_pred CCcccccccee--eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 242 SGKRGQQALKA--TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 242 ~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
-+. .+. .-..|++.|+++.+++ .+++.++|+.||.|++||--+++++..+.
T Consensus 248 ~Qc-----fvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~--------------------- 300 (430)
T KOG0640|consen 248 YQC-----FVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIG--------------------- 300 (430)
T ss_pred eeE-----eeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHH---------------------
Confidence 764 221 2346999999999997 78999999999999999988876654432
Q ss_pred EEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-----c
Q 010784 320 YIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-----V 392 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-----~ 392 (501)
..| ...|.+..|..+|+++++.+.|. +++|.+.+++.+ .++.|. .
T Consensus 301 ----------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l------~~YtGAg~tgrq 352 (430)
T KOG0640|consen 301 ----------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML------KEYTGAGTTGRQ 352 (430)
T ss_pred ----------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE------EEEecCCcccch
Confidence 124 45789999999999999999999 999999997654 555442 1
Q ss_pred cCeEEEEecCC-eE-EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 393 GSVTQLHMDPY-KI-VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 393 ~~v~~l~~~~~-~~-l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
..-+...|+.. .+ +.---..+.+.-||.+++..+..+. .+|.+.+..+.-||.+.-+++++ .|-.+++|--.
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s----lgHn~a~R~i~HSP~~p~FmTcs--dD~raRFWyrr 426 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS----LGHNGAVRWIVHSPVEPAFMTCS--DDFRARFWYRR 426 (430)
T ss_pred hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc----cCCCCCceEEEeCCCCCceeeec--ccceeeeeeec
Confidence 11223345554 33 3333345779999999988877774 67899999999999999999999 77999999643
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-30 Score=235.03 Aligned_cols=274 Identities=18% Similarity=0.246 Sum_probs=228.6
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
.+-+.|+ ....+|.|. ...+.+|+..++ .......-+.+.|+++.|++ +|.+|+.|..+|.|.|
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~-------------~G~~LavG~~~g~v~i 243 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSG-SVTELCSFGEELVTSVKWSP-------------DGSHLAVGTSDGTVQI 243 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCC-ceEEeEecCCCceEEEEECC-------------CCCEEEEeecCCeEEE
Confidence 3555666 344555553 368999999886 54444445588999999999 8999999999999999
Q ss_pred ec--CCceeeeccC-CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 193 WW--KGSCQRCFKG-HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 193 wd--~~~~~~~~~~-h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
|| ..+.+..+.+ |...|-+++| ++..+.+|+.|+.|..+|++..+. ....+.+|...|..++|++
T Consensus 244 wD~~~~k~~~~~~~~h~~rvg~laW------~~~~lssGsr~~~I~~~dvR~~~~-----~~~~~~~H~qeVCgLkws~- 311 (484)
T KOG0305|consen 244 WDVKEQKKTRTLRGSHASRVGSLAW------NSSVLSSGSRDGKILNHDVRISQH-----VVSTLQGHRQEVCGLKWSP- 311 (484)
T ss_pred EehhhccccccccCCcCceeEEEec------cCceEEEecCCCcEEEEEEecchh-----hhhhhhcccceeeeeEECC-
Confidence 99 7777888888 9999999999 367999999999999999998775 4445889999999999997
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH 349 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 349 (501)
++.++++|+.|+.+.|||.... +++..+..|...|.
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~--------------------------------------------~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSP--------------------------------------------EPKFTFTEHTAAVK 347 (484)
T ss_pred CCCeeccCCCccceEeccCCCc--------------------------------------------cccEEEeccceeee
Confidence 8999999999999999998543 23456777999999
Q ss_pred EEEEcCC-CcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEE-ecCCCcEEEEeCCC
Q 010784 350 SFSIMPS-KSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTG-GRDDLRINIWETDT 422 (501)
Q Consensus 350 ~v~~~~~-~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~-gs~dg~i~iwd~~~ 422 (501)
.++|+|- ..+||+|+ .|+ |++||..+++.+ ..+.. ...|.+|.|++. .++++ |..++.|.||+..+
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i------~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI------DSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe------ccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 9999995 77888887 677 999999987654 55443 678999999998 56555 55678999999999
Q ss_pred cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
.+.+..+ .+|...|..++++|||..+++|+ .|.++++|++-..
T Consensus 421 ~~~~~~l-----~gH~~RVl~la~SPdg~~i~t~a--~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 MKLVAEL-----LGHTSRVLYLALSPDGETIVTGA--ADETLRFWNLFDE 463 (484)
T ss_pred cceeeee-----cCCcceeEEEEECCCCCEEEEec--ccCcEEeccccCC
Confidence 9999999 68899999999999999999999 5699999997664
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=220.13 Aligned_cols=260 Identities=17% Similarity=0.244 Sum_probs=216.9
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee--------ccCCCCceEEEEeeecCCC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC--------FKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~--------~~~h~~~v~~l~~s~~~~~ 220 (501)
+.+..+.|..|+| ||++|++|+.||.|.||| +|+..+. |--+..+|.|+.|+ .
T Consensus 211 g~KSh~EcA~FSP-------------DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS----R 273 (508)
T KOG0275|consen 211 GQKSHVECARFSP-------------DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS----R 273 (508)
T ss_pred ccccchhheeeCC-------------CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec----c
Confidence 4456678888888 899999999999999999 6655443 33578899999997 8
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
+...+++|+.||.|++|.+.++. ++..+. .|+..|+++.|+. ++..+++++.|.++++--+.+++.
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~------ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~------ 340 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQ------CLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC------ 340 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecch------HHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchh------
Confidence 99999999999999999999998 466665 8999999999996 788999999999999998887754
Q ss_pred ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
+..+++|...|+...|+++|..+++++.|+ |++|+.++.++
T Consensus 341 --------------------------------------LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 341 --------------------------------------LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC 382 (508)
T ss_pred --------------------------------------HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhh
Confidence 456789999999999999999999999999 99999999877
Q ss_pred CCCCCCcccccC--cccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784 379 AVKPQPMAELDG--HVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 379 ~~~~~~~~~~~~--h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 453 (501)
+ .+++. ...+|+++..-|. .++++ ...++|.|-++. |+.++++..+... .+...+++.||.|.++
T Consensus 383 ~------~Tfk~~~~d~~vnsv~~~PKnpeh~iVC-Nrsntv~imn~q-GQvVrsfsSGkRE--gGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 383 L------STFKPLGTDYPVNSVILLPKNPEHFIVC-NRSNTVYIMNMQ-GQVVRSFSSGKRE--GGDFINAILSPKGEWI 452 (508)
T ss_pred h------hhccCCCCcccceeEEEcCCCCceEEEE-cCCCeEEEEecc-ceEEeeeccCCcc--CCceEEEEecCCCcEE
Confidence 6 55543 4567888888776 55555 688999999985 8889998655433 4566677899999999
Q ss_pred EEeecCCCceEEEeeccCC---------------------ccceeecCCCCceeeecc
Q 010784 454 VTASYGEPGLLQFRDFSNA---------------------TCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~~---------------------~~~~~s~~~d~~~~~w~~ 490 (501)
.+.+ +|+.++.+.+..+ ++++++-++||..++|.+
T Consensus 453 Ycig--ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 453 YCIG--EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred EEEc--cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 9999 7799999986543 356778899999999974
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.8e-29 Score=196.27 Aligned_cols=297 Identities=18% Similarity=0.218 Sum_probs=229.7
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc------c----c----ccceecccCCcceeEEEeeccCcCcc
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS------E----S----YYRATLSDHKARITCMRLFPLHETSL 169 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~------~----~----~~~~~~~~h~~~V~~~~~~~~~~~~~ 169 (501)
.........|.+++|+|.|.+.|.|++.++++|-.... + . -..+.-+.|++.|.|.+|+|
T Consensus 26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~------ 99 (350)
T KOG0641|consen 26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP------ 99 (350)
T ss_pred EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC------
Confidence 34455677799999999999999999999999875321 1 1 12334467999999999999
Q ss_pred cccCCCCcCcEEEEeeCCCceEEec--CC-----ceeeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccC
Q 010784 170 FRSEPQRTENVLVTSSCDHSIRLWW--KG-----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSS 241 (501)
Q Consensus 170 ~~~~~~~~~~~l~s~~~dg~i~vwd--~~-----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~ 241 (501)
+|.++++|+.|.+|++.- .. ..-..|.-|.+.|..++|.-.+...+.+|++++ .|..|.+-|..+
T Consensus 100 -------~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 100 -------CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred -------ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 899999999999999863 11 122456779999999999744455567788765 466777778777
Q ss_pred CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784 242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI 321 (501)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
+. ..+.+.+|++-|..+-- . ++-++++|+.|.+|++||++....+.....
T Consensus 173 g~------~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~---------------------- 222 (350)
T KOG0641|consen 173 GQ------GFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN---------------------- 222 (350)
T ss_pred CC------cceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccC----------------------
Confidence 76 47889999999987643 2 678999999999999999997744322110
Q ss_pred EeCCcEEEEEcCCCceEeeecc---CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784 322 ASGSSVVTIDLRTMQKVMTPAI---CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ 397 (501)
Q Consensus 322 ~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 397 (501)
.+.. ....|.+++..|.|++|++|-.|. ..+||++.++. ++.+..|...|.+
T Consensus 223 ------------------~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~------iq~f~phsadir~ 278 (350)
T KOG0641|consen 223 ------------------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM------IQRFHPHSADIRC 278 (350)
T ss_pred ------------------cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce------eeeeCCCccceeE
Confidence 0111 246789999999999999999999 99999999654 5999999999999
Q ss_pred EEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 398 LHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+.|+|. .++.+||.|..|++-|+. |.+...+..--...|...+..+.|+|..--+++.+ .|.++.+|.+.
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss--adkt~tlwa~~ 349 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS--ADKTATLWALN 349 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEecCccceeeecc--CcceEEEeccC
Confidence 999999 999999999999999986 44433332222245677788889999887788887 56999999764
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.2e-30 Score=222.02 Aligned_cols=293 Identities=18% Similarity=0.225 Sum_probs=230.3
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccccc---cee-------------c-ccCCcceeEEEeeccCc
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY---RAT-------------L-SDHKARITCMRLFPLHE 166 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~---~~~-------------~-~~h~~~V~~~~~~~~~~ 166 (501)
..+..|..++.|++++++..+..+++.+++|.-|++.++... +.. - ++|...|.+++.++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~--- 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS--- 212 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC---
Confidence 455668888999999999999999999999999998876322 111 1 37888899999999
Q ss_pred CcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784 167 TSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244 (501)
Q Consensus 167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 244 (501)
||++|++|+.|..|.||+ +...++.+++|.+.|.+++|. .....+++++.|++|++|+++...
T Consensus 213 ----------Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr----~gt~~lys~s~Drsvkvw~~~~~s- 277 (479)
T KOG0299|consen 213 ----------DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR----KGTSELYSASADRSVKVWSIDQLS- 277 (479)
T ss_pred ----------CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeee----cCccceeeeecCCceEEEehhHhH-
Confidence 899999999999999999 888899999999999999996 566789999999999999999876
Q ss_pred cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
.+.++.+|...|..|.... .+..+-+|+.|+++++|++....
T Consensus 278 -----~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees-------------------------------- 319 (479)
T KOG0299|consen 278 -----YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES-------------------------------- 319 (479)
T ss_pred -----HHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccc--------------------------------
Confidence 5889999999999998874 55566666699999999995432
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc---cc---cCcccCeEE
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA---EL---DGHVGSVTQ 397 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~---~~---~~h~~~v~~ 397 (501)
...+.++.+.+.|++|- +...+++|++++ |.+|++.+.+.++....-+ .. -.+..+|++
T Consensus 320 -------------qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits 385 (479)
T KOG0299|consen 320 -------------QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS 385 (479)
T ss_pred -------------eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence 13456678889999987 456788999888 9999999876552211111 11 112248999
Q ss_pred EEecCC-eEEEEecCCCcEEEEeCCCcc----cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 398 LHMDPY-KIVTGGRDDLRINIWETDTGM----LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 398 l~~~~~-~~l~~gs~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
++..|. .++++||.+|.|++|.+..+- ++..+ .-.+.|+.++|+++|+.|++|..-+...=+.|-....
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l------s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL------SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCCccccceeeec------ccccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence 999999 999999999999999998873 33333 2367899999999999888876433333344444333
No 75
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.2e-29 Score=208.95 Aligned_cols=269 Identities=18% Similarity=0.243 Sum_probs=214.0
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE 230 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~ 230 (501)
..+.|..|.|+| .++.|+.++.||++++|| ....++..-.|..++.+.+|. +...+++|+.
T Consensus 12 P~d~IS~v~f~~-------------~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~-----d~~~~~~G~~ 73 (323)
T KOG1036|consen 12 PEDGISSVKFSP-------------SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFA-----DESTIVTGGL 73 (323)
T ss_pred ChhceeeEEEcC-------------cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeecc-----CCceEEEecc
Confidence 367899999998 678888888999999999 333333334599999999994 6789999999
Q ss_pred CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
||.|+.+|++++. ...+..|..+|++|...+ ....+++||+|++|++||.+... ..........++
T Consensus 74 dg~vr~~Dln~~~-------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~------~~~~~d~~kkVy 139 (323)
T KOG1036|consen 74 DGQVRRYDLNTGN-------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKV------VVGTFDQGKKVY 139 (323)
T ss_pred CceEEEEEecCCc-------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccc------cccccccCceEE
Confidence 9999999999986 466778999999999997 56689999999999999999743 333335556899
Q ss_pred eeecCCCeEEEEe-CCcEEEEEcCCCceEeeec--cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcc
Q 010784 311 DMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 311 ~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 386 (501)
+++..++.+++++ +..+.+||+++........ ..+..+.++++.|++.-+++++-++ |.+=.+...+.. .....
T Consensus 140 ~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--~skky 217 (323)
T KOG1036|consen 140 CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--QSKKY 217 (323)
T ss_pred EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH--hhhce
Confidence 9999999999965 4599999999987654322 2356789999999888888888555 665444433221 11124
Q ss_pred cccCcc---------cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 387 ELDGHV---------GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 387 ~~~~h~---------~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
.|+.|. .+|++|+|+|- ..+++|+.||.|.+||..+.+.+..+ ......|..++|+.||..||.|
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~-----~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL-----AKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc-----cCCCCceEEEEeccCCCeEEEE
Confidence 455552 47999999999 99999999999999999999999998 3446779999999999999999
Q ss_pred ecC
Q 010784 457 SYG 459 (501)
Q Consensus 457 ~~d 459 (501)
+.-
T Consensus 293 ~sy 295 (323)
T KOG1036|consen 293 SSY 295 (323)
T ss_pred ech
Confidence 753
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.4e-30 Score=234.79 Aligned_cols=242 Identities=19% Similarity=0.292 Sum_probs=205.4
Q ss_pred eEEee-CCcEEEeecCCeeeEEEEecccccc-----cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 115 HILLD-NNDIFSTQGSSIQNIKIDNFLSESY-----YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 115 ~~~~~-~~~~~~~~g~~d~~i~vw~~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
.+..+ |+++|+.+|+.||.|++|+...... .+..++.|.+.|+.+.... +++.|+++|.|.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-------------~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-------------NGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-------------CCCceEEecCCc
Confidence 44455 6788999999999999999865322 4778899999999999987 789999999999
Q ss_pred ceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc----cccccceeecc-CCCC
Q 010784 189 SIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK----RGQQALKATLY-GHEK 259 (501)
Q Consensus 189 ~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~~-~~~~ 259 (501)
+|++|+ .+ -++.++..|..-|.|+++. .++...+|+|+.|+.|.+||++++.. .........+. ++..
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~---ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI---AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeec---ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 999998 33 6788999999999999983 36788999999999999999997632 01111222333 7888
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
+|++++.++ .+..+++|+..+.+++||.++++ .+.
T Consensus 173 siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~--------------------------------------------kim 207 (735)
T KOG0308|consen 173 SIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCK--------------------------------------------KIM 207 (735)
T ss_pred ceeeeecCC-cceEEEecCcccceEEecccccc--------------------------------------------cee
Confidence 999999986 67899999999999999998874 445
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
.+++|...|..+..++||+.+++++.|+ |++||+...+++ .++..|...|.++..+|+ ..+.+|+.||.|..
T Consensus 208 kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl------~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 208 KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL------ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred eeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee------eeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 6779999999999999999999999999 999999986654 899999999999999999 88888899999999
Q ss_pred EeCCCc
Q 010784 418 WETDTG 423 (501)
Q Consensus 418 wd~~~~ 423 (501)
=|+++.
T Consensus 282 Tdl~n~ 287 (735)
T KOG0308|consen 282 TDLRNP 287 (735)
T ss_pred cccCCc
Confidence 999884
No 77
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.9e-29 Score=228.54 Aligned_cols=360 Identities=17% Similarity=0.194 Sum_probs=250.6
Q ss_pred EEecCCCCceEEeeCCcEEEeecC--CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGS--SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~--~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
...+.++++|++|+++|+|+|+|- ....++||++... ..+..|..|+-.|+|++|+| .++++++
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h-~vVAEfvdHKY~vtcvaFsp-------------~~kyvvS 139 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFH-GVVAEFVDHKYNVTCVAFSP-------------GNKYVVS 139 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccc-cchhhhhhccccceeeeecC-------------CCcEEEe
Confidence 344667899999999999999997 6788999999984 67888999999999999999 7899998
Q ss_pred eeC--CCceEEec-CCceeeeccCCCCceEEEEeeecCCCC---------------------------------------
Q 010784 184 SSC--DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGS--------------------------------------- 221 (501)
Q Consensus 184 ~~~--dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~--------------------------------------- 221 (501)
.+. |-.|.+|| .-.....-..-...|..++|+ .+
T Consensus 140 VGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fs----EdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~l 215 (1080)
T KOG1408|consen 140 VGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFS----EDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNL 215 (1080)
T ss_pred eccccceEEEhhhhhhcccccccccceeEEEEEEc----cCCceeeeeeeeeEEEEEeeccccccCCccccchhhhcccc
Confidence 765 44566775 111100000111222233332 22
Q ss_pred ------------------------------------------------------CCEEEEeeCCCcEEEEeccCCCc---
Q 010784 222 ------------------------------------------------------GKILASGGEDATVRLWSLSSSGK--- 244 (501)
Q Consensus 222 ------------------------------------------------------~~~l~sg~~dg~i~iwd~~~~~~--- 244 (501)
.+++++|+.+|.|++|+..+-.-
T Consensus 216 r~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~T 295 (1080)
T KOG1408|consen 216 RFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGT 295 (1080)
T ss_pred ccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccc
Confidence 34555555566666655433211
Q ss_pred ------------------------------------------------------------cccccceeeccCCCCceeEE
Q 010784 245 ------------------------------------------------------------RGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 245 ------------------------------------------------------------~~~~~~~~~~~~~~~~v~~l 264 (501)
..+......+-.|...|+.+
T Consensus 296 lpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~V 375 (1080)
T KOG1408|consen 296 LPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDV 375 (1080)
T ss_pred cccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeee
Confidence 00011112223355556655
Q ss_pred EEeec----------CCeEEEEEeCCCeEEEEECCCCccccc-------eeccc-------------------------c
Q 010784 265 SVAGH----------KSFLLVTISKDSKVRVWDTSTSSAVRS-------SCCVG-------------------------M 302 (501)
Q Consensus 265 ~~~~~----------~~~~l~s~s~dg~v~vwd~~~~~~~~~-------~~~~~-------------------------~ 302 (501)
...|- ....|++++.|++|++||+..+..-.. ..... .
T Consensus 376 e~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~ 455 (1080)
T KOG1408|consen 376 ENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVST 455 (1080)
T ss_pred ccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhh
Confidence 54441 133699999999999999986321100 00000 0
Q ss_pred eecCCCceeeecCCCeEEEEeCC---cEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCCc-EEEEecCC
Q 010784 303 TSVPGVPVDMKCHESMLYIASGS---SVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~-i~iwd~~~ 375 (501)
......+.++..++++..+++|. .+++|++.+.+....+..|+..|.++.++.- .++|++++.|+ |.+||...
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 01122345667788888898874 8999999999999999999999999999853 68999999999 99999865
Q ss_pred CCCCCCCCCcccccCc-------------------------------------------------ccCeEEEEecCC-eE
Q 010784 376 SQDAVKPQPMAELDGH-------------------------------------------------VGSVTQLHMDPY-KI 405 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h-------------------------------------------------~~~v~~l~~~~~-~~ 405 (501)
.-.+ ++++.+| ...++.+++.|. ++
T Consensus 536 ny~l-----~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 536 NYDL-----VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred ccch-----hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce
Confidence 4222 2222222 234667777888 88
Q ss_pred EEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc------------
Q 010784 406 VTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT------------ 473 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~------------ 473 (501)
+++++.|..|+||++++|+..+.|++.. .|.+....+...|.|-||++.. .|.++.++|+..++
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~--~~eG~lIKv~lDPSgiY~atSc--sdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSR--DHEGDLIKVILDPSGIYLATSC--SDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccc--cCCCceEEEEECCCccEEEEee--cCCceEEEEeccchhhhhhcCcchhe
Confidence 8888999999999999999999997643 4567777889999999999999 55999999976544
Q ss_pred ---------cceeecCCCCceeeecccC
Q 010784 474 ---------CPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 474 ---------~~~~s~~~d~~~~~w~~~~ 492 (501)
+.+++.+.||.|.+|.+..
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeeecccchhheeecCCceEEEEECch
Confidence 4467889999999998763
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.3e-30 Score=211.75 Aligned_cols=291 Identities=18% Similarity=0.272 Sum_probs=246.6
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
.+.+|..+|-.++......++.+++.|.+.+||.++++ .++..+.||.+.|++++|++ .+.+++++
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~-------------s~~L~lTa 208 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHN-------------SGLLLLTA 208 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEecc-------------ccceEEEc
Confidence 45567778999999988889999999999999999996 89999999999999999999 78999999
Q ss_pred eCCCceEEec------CC------------------------------------ceeeeccCCCCceEEEEeeecCCCCC
Q 010784 185 SCDHSIRLWW------KG------------------------------------SCQRCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 185 ~~dg~i~vwd------~~------------------------------------~~~~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
+.|++..||. .. .++..+.+|.+.|.+..|. ..|
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL----~gg 284 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL----AGG 284 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh----cCc
Confidence 9999999994 00 0123567899999999997 789
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM 302 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 302 (501)
+.+++++.|.+..+||+++++ ++..+.+|....+.++-+| ...++++++.|.+.++||++..
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge------~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea----------- 346 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGE------VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA----------- 346 (481)
T ss_pred ceeeeeeccccceeeeeccCc------eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----------
Confidence 999999999999999999998 5899999999999999998 7889999999999999999843
Q ss_pred eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC
Q 010784 303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK 381 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~ 381 (501)
-+.+..|++|...|+++.|..+ ..+++|++|. |++||+++...
T Consensus 347 --------------------------------I~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs--- 390 (481)
T KOG0300|consen 347 --------------------------------IQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS--- 390 (481)
T ss_pred --------------------------------cceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC---
Confidence 1334678999999999999755 4688999999 99999998754
Q ss_pred CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc--cEEEEeec
Q 010784 382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG--CRIVTASY 458 (501)
Q Consensus 382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~s~~~ 458 (501)
++.++.. ..+++.++++.. .+++.--.+..|++||+. |..+..++.....+|...|.+++|..+. .-|++++.
T Consensus 391 --plATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGF 466 (481)
T KOG0300|consen 391 --PLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGF 466 (481)
T ss_pred --cceeeec-CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccc
Confidence 4566664 678999999988 899988778889999985 6667777655567889999999998654 46778884
Q ss_pred CCCceEEEeeccCCc
Q 010784 459 GEPGLLQFRDFSNAT 473 (501)
Q Consensus 459 d~~g~i~~w~~~~~~ 473 (501)
|..+.-|++..+.
T Consensus 467 --DR~v~gW~in~p~ 479 (481)
T KOG0300|consen 467 --DRMVAGWKINTPT 479 (481)
T ss_pred --cceeeeeEecccC
Confidence 4899999887653
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=217.61 Aligned_cols=269 Identities=16% Similarity=0.210 Sum_probs=215.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-----CCceeeeccCCCCceEEEEeeecC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLG 218 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~ 218 (501)
+..+++..|++.|+-+.||+ +|++|||++.|.+..+|+ .-+..+++.+|..+|..+.||
T Consensus 215 qt~qil~~htdEVWfl~FS~-------------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS--- 278 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSH-------------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS--- 278 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcC-------------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC---
Confidence 55677889999999999999 899999999999999997 334567889999999999998
Q ss_pred CCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
||.++|++|+.|..+.+||..++.. ...+ .++...+.+.+|.| ++..+++|+.|+.+..||+.....
T Consensus 279 -PDdryLlaCg~~e~~~lwDv~tgd~------~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~---- 346 (519)
T KOG0293|consen 279 -PDDRYLLACGFDEVLSLWDVDTGDL------RHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNIL---- 346 (519)
T ss_pred -CCCCeEEecCchHheeeccCCcchh------hhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchh----
Confidence 8999999999999999999999974 3333 34567899999998 888999999999999999976521
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
...++ ....|.+++.++||+++++.+.|. |++++..+
T Consensus 347 -----------------------------------------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 347 -----------------------------------------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred -----------------------------------------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 01111 135588999999999999999888 99999987
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-cccEE
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-SGCRI 453 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l 453 (501)
.... ... ....+|++++.+.+ +++...-.+..+++||++..+.++.+.+|.. ..-+-.-||-- +..++
T Consensus 386 ~~dr------~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq---~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 386 RVDR------GLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ---GHFIIRSCFGGGNDKFI 455 (519)
T ss_pred hhhh------ccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc---cceEEEeccCCCCcceE
Confidence 5432 222 33568999999999 7777766899999999999999999965432 12233335654 45899
Q ss_pred EEeecCCCceEEEeeccCCc----------------------cceeecCCCCceeeecccCC
Q 010784 454 VTASYGEPGLLQFRDFSNAT----------------------CPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~~~----------------------~~~~s~~~d~~~~~w~~~~~ 493 (501)
++|| +|+.|++|+...+. ..++|+|+||++|+|.+...
T Consensus 456 aSGS--ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 456 ASGS--EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecC--CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999 88999999955332 34679999999999998754
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=216.40 Aligned_cols=276 Identities=17% Similarity=0.200 Sum_probs=230.8
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
.+.++.+.+....++||+.|..+.++|..++ +.+.+++||...|+.+.|+| +...+++++.|..|+
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~-------------~~~~v~~aSad~~i~ 286 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHK-------------DLDTVITASADEIIR 286 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEecc-------------chhheeecCCcceEE
Confidence 3777888887899999999999999999984 99999999999999999999 789999999999999
Q ss_pred Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCceeEEEEe
Q 010784 192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPIKLMSVA 267 (501)
Q Consensus 192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~ 267 (501)
||. ...+......|.++|+.+..+ +.|.||++++.||+..+.|+.++.. +.... ...-.+++.+|+
T Consensus 287 vws~~~~s~~~~~~~h~~~V~~ls~h----~tgeYllsAs~d~~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fH 356 (506)
T KOG0289|consen 287 VWSVPLSSEPTSSRPHEEPVTGLSLH----PTGEYLLSASNDGTWAFSDISSGSQ------LTVVSDETSDVEYTSAAFH 356 (506)
T ss_pred eeccccccCccccccccccceeeeec----cCCcEEEEecCCceEEEEEccCCcE------EEEEeeccccceeEEeeEc
Confidence 998 555667778899999999997 8999999999999999999999874 22222 223458999999
Q ss_pred ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
| |+.+|.+|..||.|++||+..+. .+..|.+|.++
T Consensus 357 p-DgLifgtgt~d~~vkiwdlks~~--------------------------------------------~~a~Fpght~~ 391 (506)
T KOG0289|consen 357 P-DGLIFGTGTPDGVVKIWDLKSQT--------------------------------------------NVAKFPGHTGP 391 (506)
T ss_pred C-CceEEeccCCCceEEEEEcCCcc--------------------------------------------ccccCCCCCCc
Confidence 8 89999999999999999998763 23467889999
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC-eEEEEecCCCcEEEEeCC--C
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY-KIVTGGRDDLRINIWETD--T 422 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~--~ 422 (501)
|..++|+.+|.+|+++++|+ |++||+|..+.. .++... ...|.++.|++. .+++.++.|=.|++++-. +
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~------kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNF------KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhccc------ceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 99999999999999999999 999999987654 444322 236999999999 888877677666666533 4
Q ss_pred cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
..++..+ ..|.+..+++.|....++++++| .|..++++.+
T Consensus 466 W~~~~~~-----~~~sg~st~v~Fg~~aq~l~s~s--md~~l~~~a~ 505 (506)
T KOG0289|consen 466 WTEIKEL-----ADHSGLSTGVRFGEHAQYLASTS--MDAILRLYAL 505 (506)
T ss_pred ceeeehh-----hhcccccceeeecccceEEeecc--chhheEEeec
Confidence 5667777 45667889999999999999999 5577887754
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=3e-30 Score=207.56 Aligned_cols=268 Identities=17% Similarity=0.181 Sum_probs=228.5
Q ss_pred cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCC
Q 010784 145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
.-.+..||+.+|..++|+| ..|+|-+|++++.||.-.+-+ +|.-+.+|.+|.+.|.+... +.+.
T Consensus 6 ~pl~c~ghtrpvvdl~~s~----------itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l----~~na 71 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSP----------ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATL----NKNA 71 (334)
T ss_pred CceEEcCCCcceeEEeccC----------CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeec----Cchh
Confidence 3446679999999999998 356899999999999988886 89999999999999999887 3677
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM 302 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 302 (501)
...++++.|-+.++||.-++.. +..+. |..-|..++|+. +.++|++|+.+..++|||++..+.
T Consensus 72 ~~aasaaadftakvw~a~tgde------lhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~A--------- 134 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTGDE------LHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA--------- 134 (334)
T ss_pred hhhhhhcccchhhhhhhhhhhh------hhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCC---------
Confidence 7889999999999999999874 55554 888999999996 889999999999999999987642
Q ss_pred eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC
Q 010784 303 TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK 381 (501)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~ 381 (501)
+...+.+|.+.|..+.|....+.|++.++|+ ||+||.+++..+
T Consensus 135 ----------------------------------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v-- 178 (334)
T KOG0278|consen 135 ----------------------------------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV-- 178 (334)
T ss_pred ----------------------------------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE--
Confidence 2346678999999999999888888889888 999999998765
Q ss_pred CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784 382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE 460 (501)
Q Consensus 382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 460 (501)
+++.- ..+|+++.++++ ++++++ ..+.|.+||..+..+++.+.. ...|.+..++|+...+++|+ +
T Consensus 179 ----~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~------P~nV~SASL~P~k~~fVaGg--e 244 (334)
T KOG0278|consen 179 ----QSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM------PCNVESASLHPKKEFFVAGG--E 244 (334)
T ss_pred ----EEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC------ccccccccccCCCceEEecC--c
Confidence 66664 678999999999 888885 888999999999999988842 45688899999999999998 6
Q ss_pred CceEEEeec----------------------cCCccceeecCCCCceeeecccCC
Q 010784 461 PGLLQFRDF----------------------SNATCPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 461 ~g~i~~w~~----------------------~~~~~~~~s~~~d~~~~~w~~~~~ 493 (501)
|..++.||+ ++++...++||+||++++|.....
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 788888874 455666889999999999976544
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=234.50 Aligned_cols=255 Identities=23% Similarity=0.387 Sum_probs=216.8
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee-ccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
|...+.+..|.. +++++++.|++|++|| ++..+.. +.+|.+.|.++++. ..+.++++|
T Consensus 207 ~~~~~~~~q~~~---------------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~----~~~~~lvsg 267 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---------------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP----SGGDKLVSG 267 (537)
T ss_pred Ccchhhhheeec---------------CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEe----cCCCEEEEE
Confidence 566788888864 7999999999999999 7777777 99999999999994 468899999
Q ss_pred eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC
Q 010784 229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
+.|.++++||..++. +...+.+|...|.++... +..+++|+.|.+|++|++.+++
T Consensus 268 S~D~t~rvWd~~sg~------C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~---------------- 322 (537)
T KOG0274|consen 268 STDKTERVWDCSTGE------CTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGA---------------- 322 (537)
T ss_pred ecCCcEEeEecCCCc------EEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcc----------------
Confidence 999999999999987 699999999999998875 4588889999999999998763
Q ss_pred ceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc
Q 010784 309 PVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~ 387 (501)
.+..+.+|.++|.++..+ +.++++|+.|+ |++||+.+++++ .+
T Consensus 323 ----------------------------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl------~s 366 (537)
T KOG0274|consen 323 ----------------------------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL------KS 366 (537)
T ss_pred ----------------------------eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee------ee
Confidence 345666799999999996 88999999998 999999986655 99
Q ss_pred ccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 388 LDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
+.+|...|+++.+.+...+.+|+.|+.|++||++++ +++.++ .+|..-+..+.+ .+++|++++ .|+.|++
T Consensus 367 l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl-----~~h~~~v~~l~~--~~~~Lvs~~--aD~~Ik~ 437 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTL-----QGHTSLVSSLLL--RDNFLVSSS--ADGTIKL 437 (537)
T ss_pred ecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhh-----cCCccccccccc--ccceeEecc--ccccEEE
Confidence 999999999999988656677789999999999999 999999 566667755444 788999999 5599999
Q ss_pred eeccCCc--------------------cceeecCCCCceeeecccCCCC
Q 010784 467 RDFSNAT--------------------CPVLKHEVQNDSKFWGPQCYSD 495 (501)
Q Consensus 467 w~~~~~~--------------------~~~~s~~~d~~~~~w~~~~~~~ 495 (501)
||...++ ..+++.+.|+.+++|++.....
T Consensus 438 WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 438 WDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 9966433 3345677899999998876653
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.7e-28 Score=201.53 Aligned_cols=265 Identities=18% Similarity=0.172 Sum_probs=211.0
Q ss_pred EeecCCeeeEEEEecccc-----------cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784 125 STQGSSIQNIKIDNFLSE-----------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW 193 (501)
Q Consensus 125 ~~~g~~d~~i~vw~~~~~-----------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw 193 (501)
++.|++...|.=+++... ..++..+..|.+.|++++.+ +.++|+|+.|-+|+||
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---------------~~~~aSGssDetI~IY 68 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---------------GPYVASGSSDETIHIY 68 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---------------ceeEeccCCCCcEEEE
Confidence 566777777766665432 12356678999999999994 6999999999999999
Q ss_pred c--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784 194 W--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS 271 (501)
Q Consensus 194 d--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 271 (501)
| ....+..+..|.+.|+++.|.+ +...+.|++|+.||.|.+|+...-. ++..+++|.+.|+.++++| .+
T Consensus 69 Dm~k~~qlg~ll~HagsitaL~F~~--~~S~shLlS~sdDG~i~iw~~~~W~------~~~slK~H~~~Vt~lsiHP-S~ 139 (362)
T KOG0294|consen 69 DMRKRKQLGILLSHAGSITALKFYP--PLSKSHLLSGSDDGHIIIWRVGSWE------LLKSLKAHKGQVTDLSIHP-SG 139 (362)
T ss_pred eccchhhhcceeccccceEEEEecC--CcchhheeeecCCCcEEEEEcCCeE------EeeeecccccccceeEecC-CC
Confidence 9 6667778888999999999963 1223489999999999999998765 6999999999999999999 78
Q ss_pred eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784 272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF 351 (501)
Q Consensus 272 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v 351 (501)
++.++.+.|+.+++||+-.++.-.. ..+ ....+.+
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v------------------------------------------~~L---~~~at~v 174 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFV------------------------------------------LNL---KNKATLV 174 (362)
T ss_pred ceEEEEcCCceeeeehhhcCcccee------------------------------------------ecc---CCcceee
Confidence 8999999999999999988753211 011 2223448
Q ss_pred EEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccccccc
Q 010784 352 SIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 352 ~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 431 (501)
.|+|.|.+++.++.++|-+|.+.+.+.. ..+.. ...+.++.|.....+++|..|+.|.+||..+..++..+
T Consensus 175 ~w~~~Gd~F~v~~~~~i~i~q~d~A~v~------~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~-- 245 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGRNKIDIYQLDNASVF------REIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEF-- 245 (362)
T ss_pred EEcCCCCEEEEEeccEEEEEecccHhHh------hhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceee--
Confidence 9999999999999999999999875432 33322 34577777877755555569999999999998888888
Q ss_pred CCCCCCCcceeeeEe--eccccEEEEeecCCCceEEEeeccCC
Q 010784 432 NYPEEADISTGCSAM--AVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 432 ~~~~~~~~~v~~~~~--s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
.+|..+|..+.+ .|++.+|+++| .||.|++||++..
T Consensus 246 ---~AH~~RVK~i~~~~~~~~~~lvTaS--SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 ---LAHENRVKDIASYTNPEHEYLVTAS--SDGFIKVWDIDME 283 (362)
T ss_pred ---ecchhheeeeEEEecCCceEEEEec--cCceEEEEEcccc
Confidence 678889999874 36789999999 5599999999876
No 84
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.8e-28 Score=230.06 Aligned_cols=262 Identities=19% Similarity=0.139 Sum_probs=192.1
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEeccccc---------cc---ceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSES---------YY---RATLSDHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---------~~---~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
|+.....+++..+++++.+.....|+...+. +. ...+.+|.+.|++++|+|. ++++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~------------d~~~ 90 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF------------DPQK 90 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC------------CCCE
Confidence 4444455555555555555666666543221 11 1247899999999999984 5789
Q ss_pred EEEeeCCCceEEec--CC-------ceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccc
Q 010784 181 LVTSSCDHSIRLWW--KG-------SCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQAL 250 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~-------~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 250 (501)
|++|+.||+|++|| .+ ..+..+.+|...|.+++|+ |+ +++|++|+.|++|++||+.++. .
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~----P~~~~iLaSgs~DgtVrIWDl~tg~------~ 160 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH----PSAMNVLASAGADMVVNVWDVERGK------A 160 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeC----cCCCCEEEEEeCCCEEEEEECCCCe------E
Confidence 99999999999998 22 2456788999999999997 54 4799999999999999999876 4
Q ss_pred eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEE
Q 010784 251 KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTI 330 (501)
Q Consensus 251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 330 (501)
...+.+|...|.+++|+| ++.+|++++.|+.|++||+++++.
T Consensus 161 ~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~------------------------------------- 202 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTI------------------------------------- 202 (493)
T ss_pred EEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcE-------------------------------------
Confidence 677889999999999998 788999999999999999988743
Q ss_pred EcCCCceEeeeccCCCc-EEEEEEcCCCcEEEEEc----CCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC
Q 010784 331 DLRTMQKVMTPAICKPI-LHSFSIMPSKSLICTGG----IGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY 403 (501)
Q Consensus 331 d~~~~~~~~~~~~~~~~-v~~v~~~~~~~~l~~~~----~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~ 403 (501)
+..+.+|.+. +..+.|.+++..+++++ .++ |++||+++.... +.....+ ...+....|+++
T Consensus 203 -------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-----~~~~~~d~~~~~~~~~~d~d 270 (493)
T PTZ00421 203 -------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-----YSTVDLDQSSALFIPFFDED 270 (493)
T ss_pred -------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-----eeEeccCCCCceEEEEEcCC
Confidence 2334455543 44677888876666544 366 999999876432 2333322 345556678888
Q ss_pred -eEEEEec-CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc
Q 010784 404 -KIVTGGR-DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 404 -~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 450 (501)
.++++++ .|+.|++||+.+++.+..... .+..++.+++|.|..
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~~~----~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFCSSY----SSVEPHKGLCMMPKW 315 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEEeec----cCCCCCcceEecccc
Confidence 6555554 699999999999887766532 234567788888854
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=4.7e-29 Score=217.62 Aligned_cols=258 Identities=19% Similarity=0.303 Sum_probs=207.2
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCce--------eeeccCCCCceEEEEeeec
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSC--------QRCFKGHNGPVSTLSDKLL 217 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~--------~~~~~~h~~~v~~l~~s~~ 217 (501)
-.|.+.|+.+.+-|+ +.+++++++..+.|.||| .... -..+.+|+..-.+++|++
T Consensus 121 i~h~gEVnRaRymPQ------------np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~- 187 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQ------------NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR- 187 (422)
T ss_pred ccCCccchhhhhCCC------------CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc-
Confidence 368899999999996 678899999999999998 1111 126788999888899973
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
...-.|++|+.|++|++||+...... ....+...+.+|...|..++|++....+|++++.|+.+.|||+|+.+.
T Consensus 188 --~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--- 262 (422)
T KOG0264|consen 188 --QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--- 262 (422)
T ss_pred --ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC---
Confidence 44568999999999999999876542 335567788999999999999998899999999999999999996311
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecC
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIR 374 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~ 374 (501)
+......+|.+.|.+++|+|- +.+||+|+.|+ |.+||+|
T Consensus 263 ---------------------------------------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR 303 (422)
T KOG0264|consen 263 ---------------------------------------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR 303 (422)
T ss_pred ---------------------------------------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech
Confidence 122345679999999999995 77889999888 9999999
Q ss_pred CCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccc---------cCCCCCCCcceee
Q 010784 375 RSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLL---------CNYPEEADISTGC 443 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~v~~ 443 (501)
+... ++.++.+|...|..+.|+|. .++|+++.|+++.|||+..-...+.-. .....+|...|..
T Consensus 304 nL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D 378 (422)
T KOG0264|consen 304 NLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD 378 (422)
T ss_pred hccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence 9753 57999999999999999999 999999999999999997532222100 0012578899999
Q ss_pred eEeeccccEEEEeecCCCceEEEeecc
Q 010784 444 SAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 444 ~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+.|+|...++++... +|+.+.||...
T Consensus 379 fsWnp~ePW~I~Sva-eDN~LqIW~~s 404 (422)
T KOG0264|consen 379 FSWNPNEPWTIASVA-EDNILQIWQMA 404 (422)
T ss_pred ccCCCCCCeEEEEec-CCceEEEeecc
Confidence 999998876655443 78999999876
No 86
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.8e-28 Score=230.73 Aligned_cols=239 Identities=18% Similarity=0.208 Sum_probs=181.3
Q ss_pred cCcEEEEeeCCCceEEec-CC-----------ce---eeeccCCCCceEEEEeeecCCC-CCCEEEEeeCCCcEEEEecc
Q 010784 177 TENVLVTSSCDHSIRLWW-KG-----------SC---QRCFKGHNGPVSTLSDKLLGDG-SGKILASGGEDATVRLWSLS 240 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~-----------~~---~~~~~~h~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iwd~~ 240 (501)
++..+++++.+.....|+ .+ +. ...+.+|.+.|.+++|+ | ++++|++|+.||+|++||+.
T Consensus 31 d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs----P~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 31 DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN----PFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc----CCCCCEEEEEeCCCEEEEEecC
Confidence 555666666666666665 22 11 12467899999999997 5 77899999999999999997
Q ss_pred CCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE
Q 010784 241 SSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML 319 (501)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (501)
++... .....+..+.+|...|.+++|+|...++|++|+.|+.|++||+++++.
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-------------------------- 160 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-------------------------- 160 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--------------------------
Confidence 65310 111246678899999999999986667999999999999999987632
Q ss_pred EEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC-eEE
Q 010784 320 YIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS-VTQ 397 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~ 397 (501)
+..+..|...|.+++|+|+|.+|++++.|+ |++||+++++.+ .++.+|.+. +..
T Consensus 161 ------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v------~tl~~H~~~~~~~ 216 (493)
T PTZ00421 161 ------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV------SSVEAHASAKSQR 216 (493)
T ss_pred ------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE------EEEecCCCCcceE
Confidence 234567889999999999999999999998 999999987654 777888764 446
Q ss_pred EEecCC--eEEEEe---cCCCcEEEEeCCCccc-ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 398 LHMDPY--KIVTGG---RDDLRINIWETDTGML-ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 398 l~~~~~--~~l~~g---s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
+.|.++ .++++| +.|+.|++||+++... +.... ......+....|++++++|++++. .|+.|++||+..
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~----~d~~~~~~~~~~d~d~~~L~lggk-gDg~Iriwdl~~ 291 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD----LDQSSALFIPFFDEDTNLLYIGSK-GEGNIRCFELMN 291 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec----cCCCCceEEEEEcCCCCEEEEEEe-CCCeEEEEEeeC
Confidence 778887 455544 3589999999987543 33221 112345566789999999998874 479999999987
Q ss_pred Ccc
Q 010784 472 ATC 474 (501)
Q Consensus 472 ~~~ 474 (501)
+..
T Consensus 292 ~~~ 294 (493)
T PTZ00421 292 ERL 294 (493)
T ss_pred Cce
Confidence 664
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.9e-29 Score=206.99 Aligned_cols=275 Identities=22% Similarity=0.338 Sum_probs=226.6
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
.++.+.+.||++.|+.++... ....+.+++.|.+.+||. .+.|+.++.+|.+.|+++.|+ +
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~-------------tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----~ 200 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADS-------------TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----N 200 (481)
T ss_pred Eeehhhhcccccceeeehhhc-------------CCcceeecccccceeEEeeccccceeeecccccceeeEEec----c
Confidence 467788999999999999876 567999999999999998 999999999999999999998 7
Q ss_pred CCCEEEEeeCCCcEEEEec------cCCCc----------------------------cccccceeeccCCCCceeEEEE
Q 010784 221 SGKILASGGEDATVRLWSL------SSSGK----------------------------RGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~------~~~~~----------------------------~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.+.++++++.|++..||.. ..... .....++..+.+|.+.|.+..|
T Consensus 201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW 280 (481)
T KOG0300|consen 201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW 280 (481)
T ss_pred ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence 8999999999999999972 11000 0123355677889999988888
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP 346 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 346 (501)
.. +++.+++++.|.+-.+||++++. .+..+.+|..
T Consensus 281 L~-gg~Q~vTaSWDRTAnlwDVEtge--------------------------------------------~v~~LtGHd~ 315 (481)
T KOG0300|consen 281 LA-GGQQMVTASWDRTANLWDVETGE--------------------------------------------VVNILTGHDS 315 (481)
T ss_pred hc-CcceeeeeeccccceeeeeccCc--------------------------------------------eeccccCcch
Confidence 85 78899999999999999988874 4456778999
Q ss_pred cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCc-c
Q 010784 347 ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTG-M 424 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~-~ 424 (501)
..+.++-+|..+++++.+.|. .++||++.. ...+..|++|...|+++.|.-+.-+++||.|.+|++||+++. .
T Consensus 316 ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred hccccccCCcceEEEEeccCceeEeccchhh-----cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC
Confidence 999999999999999999999 999999953 345788999999999999999966677789999999999884 4
Q ss_pred cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc---------------------------ccee
Q 010784 425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT---------------------------CPVL 477 (501)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------------~~~~ 477 (501)
++.++. ..++++.++.+..+..|+.-. ++..|++||++-.. +-+.
T Consensus 391 plATIR------tdS~~NRvavs~g~~iIAiPh--DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf 462 (481)
T KOG0300|consen 391 PLATIR------TDSPANRVAVSKGHPIIAIPH--DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF 462 (481)
T ss_pred cceeee------cCCccceeEeecCCceEEecc--CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccc
Confidence 566664 356788999999998999887 67899999976322 2234
Q ss_pred ecCCCCceeeecccC
Q 010784 478 KHEVQNDSKFWGPQC 492 (501)
Q Consensus 478 s~~~d~~~~~w~~~~ 492 (501)
+++-|..+.-|++..
T Consensus 463 tcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 463 TCGFDRMVAGWKINT 477 (481)
T ss_pred cccccceeeeeEecc
Confidence 566777777777654
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.2e-28 Score=215.16 Aligned_cols=253 Identities=17% Similarity=0.281 Sum_probs=209.7
Q ss_pred EecCCCCceEEeeCC-cEEEeecCCeeeEEEEeccccc---------ccceecccCCcceeEEEeeccCcCcccccCCCC
Q 010784 107 YSVAKPHDHILLDNN-DIFSTQGSSIQNIKIDNFLSES---------YYRATLSDHKARITCMRLFPLHETSLFRSEPQR 176 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~-~~~~~~g~~d~~i~vw~~~~~~---------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~ 176 (501)
+.|+..|+.+..-|. -.++|+++..+.+.|||..+-. .+-.+|.||.+.=+++.|++.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~------------ 188 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ------------ 188 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc------------
Confidence 456777888888765 4667788999999999976421 222378899998889999986
Q ss_pred cCcEEEEeeCCCceEEec---CC------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784 177 TENVLVTSSCDHSIRLWW---KG------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd---~~------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 247 (501)
....|++|+.|++|++|| .+ .....+.+|+..|..++|++ ....+|++++.|+.+.|||++++.
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~---~h~~lF~sv~dd~~L~iwD~R~~~---- 261 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP---LHEDLFGSVGDDGKLMIWDTRSNT---- 261 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc---cchhhheeecCCCeEEEEEcCCCC----
Confidence 667899999999999998 11 12356789999999999995 667799999999999999999631
Q ss_pred ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784 248 QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (501)
.++.....+|.++|.|++|+|.++.+|||||.|++|.+||+|+.+
T Consensus 262 ~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----------------------------------- 306 (422)
T KOG0264|consen 262 SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----------------------------------- 306 (422)
T ss_pred CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-----------------------------------
Confidence 125777889999999999999999999999999999999999864
Q ss_pred EEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC--------CCCCCcccccCcccCeEE
Q 010784 328 VTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA--------VKPQPMAELDGHVGSVTQ 397 (501)
Q Consensus 328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~ 397 (501)
+++.++.+|...|..|.|+|. ...|++++.|+ +.+||+..-... ..++++....||...|..
T Consensus 307 --------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D 378 (422)
T KOG0264|consen 307 --------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD 378 (422)
T ss_pred --------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence 245788899999999999997 66788888888 999999764322 124556777899999999
Q ss_pred EEecCC--eEEEEecCCCcEEEEeCC
Q 010784 398 LHMDPY--KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 398 l~~~~~--~~l~~gs~dg~i~iwd~~ 421 (501)
+.|+|. ..+++.+.|+.++||+..
T Consensus 379 fsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 379 FSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999 888889999999999975
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-27 Score=197.57 Aligned_cols=256 Identities=16% Similarity=0.182 Sum_probs=205.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
+..+.+..-.+.|+++.|++ +|.++++++.|.+++||| .++.++++..+.-.|..++|. ..
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~-------------~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Ft----h~ 67 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSD-------------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFT----HH 67 (311)
T ss_pred ccccccccCCCceeEEEecC-------------CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEe----cC
Confidence 45566777788999999999 899999999999999999 888999998888889999986 44
Q ss_pred CCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 222 GKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 222 ~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
.+.++.++. |.+||.-++.+++ .++.+.||...|..|+.+| .+..+++++.|++|++||++..++....
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNk------ylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l-- 138 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNK------YLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLL-- 138 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCc------eEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEE--
Confidence 556666665 8899999999987 6999999999999999999 5589999999999999999976542211
Q ss_pred ccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD 378 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~ 378 (501)
+...-..++|+|+|-++|++.... |++||+++...
T Consensus 139 --------------------------------------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 139 --------------------------------------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred --------------------------------------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 112223578999999999999887 99999998642
Q ss_pred CCCCCCccccc---CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEE
Q 010784 379 AVKPQPMAELD---GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIV 454 (501)
Q Consensus 379 ~~~~~~~~~~~---~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 454 (501)
.|..++. +.....+.|.|+|+ +.+..++..+.+++.|.-+|..+.++..+... ..--...+|+||+++++
T Consensus 175 ----gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~--~~~~~~a~ftPds~Fvl 248 (311)
T KOG1446|consen 175 ----GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA--GNLPLSATFTPDSKFVL 248 (311)
T ss_pred ----CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC--CCcceeEEECCCCcEEE
Confidence 2333333 33567899999999 66666679999999999999999999654422 11225678999999999
Q ss_pred EeecCCCceEEEeeccCCcccee
Q 010784 455 TASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 455 s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
+|+ +||+|.+|++.++....+
T Consensus 249 ~gs--~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 249 SGS--DDGTIHVWNLETGKKVAV 269 (311)
T ss_pred Eec--CCCcEEEEEcCCCcEeeE
Confidence 999 679999999987775444
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.6e-28 Score=222.88 Aligned_cols=327 Identities=15% Similarity=0.149 Sum_probs=242.4
Q ss_pred eEEeeCCcEEEeecCCeeeEEEEeccccccc--ceecccCCcceeEEEeeccCc--CcccccCCCCcCcEEEEeeCCCce
Q 010784 115 HILLDNNDIFSTQGSSIQNIKIDNFLSESYY--RATLSDHKARITCMRLFPLHE--TSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~--~~~~~~h~~~V~~~~~~~~~~--~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.+.|++....+.+--.|+.++|||+..-.+. ...+-.|...|+.+.-.|-+- .+..++ -...|+|++.|++|
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl----p~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL----PRGCFTTCSSDGTI 404 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccC----CccceeEecCCCcE
Confidence 4567888999999999999999999864333 344568999999998877221 111111 13459999999999
Q ss_pred EEecC-C----ceee----------------------------------eccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784 191 RLWWK-G----SCQR----------------------------------CFKGHNGPVSTLSDKLLGDGSGKILASGGED 231 (501)
Q Consensus 191 ~vwd~-~----~~~~----------------------------------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d 231 (501)
++||. + ...+ ..-+..-.+.+++.+ |+|++|++|..-
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS----p~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS----PDGQHLASGDRG 480 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC----CCcceecccCcc
Confidence 99981 1 1100 000123468899997 899999999999
Q ss_pred CcEEEEeccCCCccccccceeeccCCCCceeEEEEeec--CCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCC
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH--KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGV 308 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~ 308 (501)
|+++|+++...+ ....+..|...|.|+.++.. ..++|++++.|..|+|||+...-.+ +... .+...
T Consensus 481 GnlrVy~Lq~l~------~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l-----~qtld~HSss 549 (1080)
T KOG1408|consen 481 GNLRVYDLQELE------YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL-----VQTLDGHSSS 549 (1080)
T ss_pred CceEEEEehhhh------hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch-----hhhhcccccc
Confidence 999999999876 47788899999999999854 3568999999999999999765322 2222 33445
Q ss_pred ceeeecCCC---eEEEEeCC-cEEEEEcCC-CceEeeecc-----CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCC
Q 010784 309 PVDMKCHES---MLYIASGS-SVVTIDLRT-MQKVMTPAI-----CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQ 377 (501)
Q Consensus 309 ~~~~~~~~~---~~~~~~~~-~i~~~d~~~-~~~~~~~~~-----~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~ 377 (501)
+.++.|... ...+.+|. ....|+... ......+.. ....++.++..|..+++++++.|+ |+|||+.+++
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 555554332 23444443 333344322 111111211 246789999999999999999999 9999999988
Q ss_pred CCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 378 DAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 378 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
.. +..+.-.+|.+....+..+|. -++++...|.++.++|+.+|+++.++ .+|...|+++.|.+|.++|++.
T Consensus 630 q~---k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-----~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 630 QV---KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-----TGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred ee---eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-----cCcchheeeeeecccchhheee
Confidence 76 222233457788889999999 88888889999999999999999999 6788999999999999999999
Q ss_pred ecCCCceEEEeecc
Q 010784 457 SYGEPGLLQFRDFS 470 (501)
Q Consensus 457 ~~d~~g~i~~w~~~ 470 (501)
+ .||+|.+|.+.
T Consensus 702 s--gDgCIFvW~lp 713 (1080)
T KOG1408|consen 702 S--GDGCIFVWKLP 713 (1080)
T ss_pred c--CCceEEEEECc
Confidence 9 66999999965
No 91
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.5e-27 Score=196.65 Aligned_cols=302 Identities=16% Similarity=0.243 Sum_probs=227.3
Q ss_pred EEecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccccc-----------cc---ceecccCCcceeEEEeeccCcCccc
Q 010784 106 FYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSES-----------YY---RATLSDHKARITCMRLFPLHETSLF 170 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~-----------~~---~~~~~~h~~~V~~~~~~~~~~~~~~ 170 (501)
...|...|+++.+++ .|+|+++|+.||.|.|||++... .+ ...-.+|+-.|.++.|.|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~------ 112 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI------ 112 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee------
Confidence 446778899999995 78999999999999999987531 00 1122468889999999996
Q ss_pred ccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784 171 RSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 171 ~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
|...|.+++.|.+++||| +.+....|+ .++.|.+-+++|... .-.++++|..|-.|++.|+.++.
T Consensus 113 ------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~SGs----- 179 (397)
T KOG4283|consen 113 ------DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIASGS----- 179 (397)
T ss_pred ------cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhh-cceEEEEecCCCcEEEEeccCCc-----
Confidence 788999999999999999 334444454 466777777764321 23578888899999999999987
Q ss_pred cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEE
Q 010784 249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVV 328 (501)
Q Consensus 249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (501)
+.+.+.+|.+.|.++.|+|...-.|++|+.||.|++||++... +...
T Consensus 180 -~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras--------------------------------gcf~ 226 (397)
T KOG4283|consen 180 -FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS--------------------------------GCFR 226 (397)
T ss_pred -ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc--------------------------------ceeE
Confidence 5899999999999999999888899999999999999998642 1233
Q ss_pred EEEcCCCce---EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc---CcccCeEEEEec
Q 010784 329 TIDLRTMQK---VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD---GHVGSVTQLHMD 401 (501)
Q Consensus 329 ~~d~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~ 401 (501)
+.|..+++. +..-..|.+.+.+++|+.++.++++.+.|. +++|+..+++... ++..... ...-.+. +. +
T Consensus 227 ~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl--~~~g~~~~n~~~~~~~~-~~-~ 302 (397)
T KOG4283|consen 227 VLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL--REFGPIIHNQTTSFAVH-IQ-S 302 (397)
T ss_pred EeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc--cccccccccccccceEE-Ee-e
Confidence 344433322 223446899999999999999999988666 9999999987541 1111110 0011111 22 2
Q ss_pred CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
-+ ..++.--.++.+.++++-++..++.+ ..|...+.+.++-|+-+...+|. -|+.|..|...
T Consensus 303 ~~s~vfv~~p~~~~lall~~~sgs~ir~l-----~~h~k~i~c~~~~~~fq~~~tg~--~d~ni~~w~p~ 365 (397)
T KOG4283|consen 303 MDSDVFVLFPNDGSLALLNLLEGSFVRRL-----STHLKRINCAAYRPDFEQCFTGD--MNGNIYMWSPA 365 (397)
T ss_pred cccceEEEEecCCeEEEEEccCceEEEee-----ecccceeeEEeecCchhhhhccc--cCCcccccccc
Confidence 22 33333346799999999999999999 45667899999999999999998 66999999873
No 92
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.6e-27 Score=224.86 Aligned_cols=247 Identities=16% Similarity=0.214 Sum_probs=183.1
Q ss_pred ecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCc-------
Q 010784 127 QGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGS------- 197 (501)
Q Consensus 127 ~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~------- 197 (501)
.|+.++.+++|+... ...+..+.+|.+.|.+++|+|. ++++|++|+.||+|+||| .+.
T Consensus 49 gGG~~gvI~L~~~~r-~~~v~~L~gH~~~V~~lafsP~------------~~~lLASgS~DgtIrIWDi~t~~~~~~~i~ 115 (568)
T PTZ00420 49 GGGLIGAIRLENQMR-KPPVIKLKGHTSSILDLQFNPC------------FSEILASGSEDLTIRVWEIPHNDESVKEIK 115 (568)
T ss_pred CCCceeEEEeeecCC-CceEEEEcCCCCCEEEEEEcCC------------CCCEEEEEeCCCeEEEEECCCCCccccccc
Confidence 477899999999877 3678889999999999999993 378999999999999999 221
Q ss_pred -eeeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 198 -CQRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 198 -~~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
.+..+.+|...|.+++|+ |++. +|++|+.|++|++||+.++.. ...+. |...|.+++|++ ++.+|+
T Consensus 116 ~p~~~L~gH~~~V~sVaf~----P~g~~iLaSgS~DgtIrIWDl~tg~~------~~~i~-~~~~V~Slswsp-dG~lLa 183 (568)
T PTZ00420 116 DPQCILKGHKKKISIIDWN----PMNYYIMCSSGFDSFVNIWDIENEKR------AFQIN-MPKKLSSLKWNI-KGNLLS 183 (568)
T ss_pred cceEEeecCCCcEEEEEEC----CCCCeEEEEEeCCCeEEEEECCCCcE------EEEEe-cCCcEEEEEECC-CCCEEE
Confidence 234678899999999997 6665 467999999999999998763 44444 567899999998 788999
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE-----
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS----- 350 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~----- 350 (501)
+++.|+.|++||+++++. +..+.+|.+.+.+
T Consensus 184 t~s~D~~IrIwD~Rsg~~--------------------------------------------i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 184 GTCVGKHMHIIDPRKQEI--------------------------------------------ASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred EEecCCEEEEEECCCCcE--------------------------------------------EEEEecccCCceeEEEEe
Confidence 999999999999998743 2344556554332
Q ss_pred EEEcCCCcEEEEEcCC----c-EEEEecCCCCCCCCCCCcccc--cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 351 FSIMPSKSLICTGGIG----K-AMTWDIRRSQDAVKPQPMAEL--DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 351 v~~~~~~~~l~~~~~d----~-i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
..|++++.+|++++.+ + |+|||+++... ++..+ ..+.+.+......++ .++++|+.|+.|++|++..
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-----pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-----ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-----ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 3456888888876633 4 99999996432 23333 233333333333444 7888889999999999987
Q ss_pred cccccccccCCCCCCCcceeeeEeecccc
Q 010784 423 GMLANSLLCNYPEEADISTGCSAMAVSGC 451 (501)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 451 (501)
+. +..+.. -.+..++.+++|.|...
T Consensus 295 ~~-~~~l~~---~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 295 GS-IRKVNE---YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred Cc-EEeecc---cccCCCccceEEccccc
Confidence 64 333321 22456788899999743
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-28 Score=220.95 Aligned_cols=237 Identities=22% Similarity=0.263 Sum_probs=204.2
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
...|+++.++++|.+||.|..+|.|.|||..+. +.+..+.+ |...|-+++|.. ..+.+|+.||
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~h~~rvg~laW~~---------------~~lssGsr~~ 280 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGSHASRVGSLAWNS---------------SVLSSGSRDG 280 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCCcCceeEEEeccC---------------ceEEEecCCC
Confidence 456999999999999999999999999999984 77778888 999999999964 8999999999
Q ss_pred ceEEec--CC-ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 189 SIRLWW--KG-SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 189 ~i~vwd--~~-~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
.|..+| .. ....++.+|...|..+.|+ +++.++++|+.|+.+.|||..... +...+..|.+.|..++
T Consensus 281 ~I~~~dvR~~~~~~~~~~~H~qeVCgLkws----~d~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 281 KILNHDVRISQHVVSTLQGHRQEVCGLKWS----PDGNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALA 350 (484)
T ss_pred cEEEEEEecchhhhhhhhcccceeeeeEEC----CCCCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEee
Confidence 999999 33 3333588999999999997 899999999999999999996654 5788899999999999
Q ss_pred EeecCCeEEEEEe--CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784 266 VAGHKSFLLVTIS--KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 266 ~~~~~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 343 (501)
|+|....+||+|+ .|+.|++||..+++.+....
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--------------------------------------------- 385 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD--------------------------------------------- 385 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc---------------------------------------------
Confidence 9999899999975 69999999999886543221
Q ss_pred CCCcEEEEEEcCCCcEEEEE-c-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784 344 CKPILHSFSIMPSKSLICTG-G-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWE 419 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~-~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd 419 (501)
....|.++.|++..+-|+++ + ... |.||+..+.+.+ ..+.+|...|..++++|+ ..+++|+.|.++++|+
T Consensus 386 tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~------~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 386 TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV------AELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee------eeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 26789999999987555544 3 444 999999986554 899999999999999999 8888889999999999
Q ss_pred CCCc
Q 010784 420 TDTG 423 (501)
Q Consensus 420 ~~~~ 423 (501)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 9764
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=202.10 Aligned_cols=278 Identities=17% Similarity=0.228 Sum_probs=208.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC--------------------ceeeecc
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG--------------------SCQRCFK 203 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--------------------~~~~~~~ 203 (501)
.....+..|++++.+.+|++ ||.++++|+.|..|+|.|.. ..++++.
T Consensus 103 yEt~ylt~HK~~cR~aafs~-------------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY 169 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSP-------------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY 169 (430)
T ss_pred cceEEEeecccceeeeeeCC-------------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh
Confidence 34456788999999999999 89999999999999999821 2356788
Q ss_pred CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE
Q 010784 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV 283 (501)
Q Consensus 204 ~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v 283 (501)
.|..+|+++.|+ |...+|++|+.|++|++||+..... +..........+|.+|.|+| .+.+++.|..-..+
T Consensus 170 DH~devn~l~FH----Pre~ILiS~srD~tvKlFDfsK~sa----KrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~ 240 (430)
T KOG0640|consen 170 DHVDEVNDLDFH----PRETILISGSRDNTVKLFDFSKTSA----KRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTL 240 (430)
T ss_pred hccCcccceeec----chhheEEeccCCCeEEEEecccHHH----HHHHHHhhccceeeeEeecC-CCceEEEecCCCce
Confidence 899999999998 8899999999999999999976432 01112223567899999998 78899999999999
Q ss_pred EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
++||+++.++-..- ..-.+|.+.|+++.+++.+++.++|
T Consensus 241 rlYdv~T~Qcfvsa-----------------------------------------nPd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSA-----------------------------------------NPDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred eEEeccceeEeeec-----------------------------------------CcccccccceeEEEecCCccEEEEe
Confidence 99999987542110 0113488999999999999999999
Q ss_pred cCCc-EEEEecCCCCCCCCCCCccccc-Ccc-cCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCc
Q 010784 364 GIGK-AMTWDIRRSQDAVKPQPMAELD-GHV-GSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADI 439 (501)
Q Consensus 364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~-~h~-~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 439 (501)
+.|+ |++||--+.+++ .++. .|. ..|.+..|..+ +++.+.+.|..+++|.+.+++++.++.+....+...
T Consensus 280 SkDG~IklwDGVS~rCv------~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCV------RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK 353 (430)
T ss_pred ccCCcEEeeccccHHHH------HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence 9999 999999887665 6654 344 47899999999 888888899999999999999999886543222222
Q ss_pred ceeeeEeeccccEEEEeec--------C-------------CCceEEEeeccCCccceeecCCCCceeeecc
Q 010784 440 STGCSAMAVSGCRIVTASY--------G-------------EPGLLQFRDFSNATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~--------d-------------~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~ 490 (501)
.-+...|+....+++.-.. | ++|.++..--++....+.+++.|...|+|--
T Consensus 354 ~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 354 HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 2233344444444443221 1 3344444444455555678888888898853
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.7e-29 Score=211.15 Aligned_cols=261 Identities=15% Similarity=0.230 Sum_probs=209.8
Q ss_pred eeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI 277 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~ 277 (501)
+..+.+|...|.|++=+ |.. ..+++|+.||.|++||+.... +..++..|.+.|..|++.. ..++++
T Consensus 59 v~~L~gHrdGV~~lakh----p~~ls~~aSGs~DG~VkiWnlsqR~------~~~~f~AH~G~V~Gi~v~~---~~~~tv 125 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKH----PNKLSTVASGSCDGEVKIWNLSQRE------CIRTFKAHEGLVRGICVTQ---TSFFTV 125 (433)
T ss_pred hhhccccccccchhhcC----cchhhhhhccccCceEEEEehhhhh------hhheeecccCceeeEEecc---cceEEe
Confidence 34567899999999976 443 689999999999999999876 5899999999999999974 578999
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe-EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS 356 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~ 356 (501)
+.|.+|+.|-+... ..+.....+....++-.... .+..+|..|.+||.+...++..+.-..+.|.++.|+|.
T Consensus 126 gdDKtvK~wk~~~~-------p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpv 198 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP-------PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPV 198 (433)
T ss_pred cCCcceeeeeccCC-------cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCC
Confidence 99999999998763 23333444455555555444 44445569999999999999999888899999999997
Q ss_pred C-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccC
Q 010784 357 K-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCN 432 (501)
Q Consensus 357 ~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~ 432 (501)
. .+|++++.|+ |.+||++....+ +.+.- ...-+.|+|+|. ..+++|+.|..++.||++.. +++...
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl------~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~--- 268 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPL------KKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH--- 268 (433)
T ss_pred cchheeeeccCCceEEEecccCCcc------ceeee-eccccceecCccccceeeccccccceehhhhhhcccchhh---
Confidence 5 4566666777 999999997765 33321 344578999999 77778899999999999874 445555
Q ss_pred CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec----------------------cCCccceeecCCCCceeeecc
Q 010784 433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF----------------------SNATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~----------------------~~~~~~~~s~~~d~~~~~w~~ 490 (501)
.+|.++|.++.|||.|+-+++||+| .+|++|.+ +.+.+.+.|||+|+.+++|.-
T Consensus 269 --~dhvsAV~dVdfsptG~EfvsgsyD--ksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 269 --KDHVSAVMDVDFSPTGQEFVSGSYD--KSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred --cccceeEEEeccCCCcchhcccccc--ceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 6789999999999999999999977 99999984 456677889999999999987
Q ss_pred cCC
Q 010784 491 QCY 493 (501)
Q Consensus 491 ~~~ 493 (501)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 543
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=5.3e-27 Score=219.00 Aligned_cols=354 Identities=13% Similarity=0.173 Sum_probs=273.5
Q ss_pred eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEE
Q 010784 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLV 182 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (501)
...+......|+++.-+|--..+|.|..+|.|.+++++.+ +.+.+++...+.|++++|..+| ...++
T Consensus 195 v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-kil~sFk~d~g~VtslSFrtDG------------~p~la 261 (910)
T KOG1539|consen 195 VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-KILMSFKQDWGRVTSLSFRTDG------------NPLLA 261 (910)
T ss_pred EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC-cEEEEEEccccceeEEEeccCC------------CeeEE
Confidence 3456667778999999999999999999999999999985 8888887667999999999842 35778
Q ss_pred EeeCCCceEEec-CCc-eeee-ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 183 TSSCDHSIRLWW-KGS-CQRC-FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 183 s~~~dg~i~vwd-~~~-~~~~-~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
+|+..|.+.+|| .++ .+.. ...|.+.|....|. +....+++++.|..+++|-.+++.. ..+.+..-.||..
T Consensus 262 s~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl----~~epVl~ta~~DnSlk~~vfD~~dg--~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 262 SGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL----PGEPVLVTAGADNSLKVWVFDSGDG--VPRLLRSRGGHSA 335 (910)
T ss_pred eccCCceEEEEEcCCCeeeeeeeccccCCcccceec----CCCceEeeccCCCceeEEEeeCCCC--cchheeeccCCCC
Confidence 888889999999 333 3333 34798999999997 7788999999999999998776543 2235666779999
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec----------------------------------------
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC---------------------------------------- 299 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---------------------------------------- 299 (501)
+..+|+|....+..+.+++.|++++.+++.....-++...
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 9999999977889999999999888887642211000000
Q ss_pred ------------------c--cc--------eecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeee---ccCCCc
Q 010784 300 ------------------V--GM--------TSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTP---AICKPI 347 (501)
Q Consensus 300 ------------------~--~~--------~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~---~~~~~~ 347 (501)
. +. ........++++.++..++.. .+.|.+|+++++-....+ ..|.++
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 0 00 001112233344445555543 458999999999988888 589999
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
|++++...-++.+++++.+| +.+||..+.... ..+.- ...+.++..+.. .+++.+..|-.|+++|+.+.+.
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~------~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK------KSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCccee------eeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 99999998899999999888 999999986432 44443 456778888887 7888888999999999999999
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc--------------------CCccceeecCCC-Cc
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS--------------------NATCPVLKHEVQ-ND 484 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~--------------------~~~~~~~s~~~d-~~ 484 (501)
.+.| .+|.+.|+.++|||||++|++++ .|++|++||+. +.+..+++...| .-
T Consensus 569 vR~f-----~gh~nritd~~FS~DgrWlisas--mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 569 VREF-----WGHGNRITDMTFSPDGRWLISAS--MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred hHHh-----hccccceeeeEeCCCCcEEEEee--cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCce
Confidence 9999 67899999999999999999999 66999999954 444556655544 55
Q ss_pred eeeec
Q 010784 485 SKFWG 489 (501)
Q Consensus 485 ~~~w~ 489 (501)
+.+|.
T Consensus 642 IylWs 646 (910)
T KOG1539|consen 642 IYLWS 646 (910)
T ss_pred EEEEE
Confidence 77774
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.1e-28 Score=193.34 Aligned_cols=259 Identities=20% Similarity=0.220 Sum_probs=204.1
Q ss_pred ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CC--ceeeeccCCCCceEEEEeeecCCCCC
Q 010784 148 TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KG--SCQRCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 148 ~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~--~~~~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
.-..|.+.|..+...- -|.+|+|++.|++|+|+. .+ +.+.++.+|.++|..++|. .+.-|
T Consensus 6 idt~H~D~IHda~lDy-------------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa--hPk~G 70 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDY-------------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA--HPKFG 70 (299)
T ss_pred hhhhhhhhhhHhhhhh-------------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec--ccccC
Confidence 3457888888877665 689999999999999997 33 6778999999999999995 22468
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC-CeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
.+|++++.||.|.||.-.++. +........|...|++++|.|++ +-.|++++.||.|.|.+.+....-
T Consensus 71 ~iLAScsYDgkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w------- 139 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW------- 139 (299)
T ss_pred cEeeEeecCceEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-------
Confidence 999999999999999988764 33456677899999999999975 668899999999999998764110
Q ss_pred ceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---C-----------cEEEEEcCCc
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---K-----------SLICTGGIGK 367 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~-----------~~l~~~~~d~ 367 (501)
........|.-.|++++|.|- | +.|++|+.|+
T Consensus 140 ----------------------------------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 140 ----------------------------------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred ----------------------------------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence 001223457888999999885 4 5699999888
Q ss_pred -EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCc--ccccccccCCCCCCCc
Q 010784 368 -AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTG--MLANSLLCNYPEEADI 439 (501)
Q Consensus 368 -i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~ 439 (501)
|+||+..+.+ ...-.++.+|.+.|..++|.|. ..++++|.||++.||-.+.. .-..++. .....
T Consensus 186 ~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll----~~f~~ 257 (299)
T KOG1332|consen 186 LVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL----EEFPD 257 (299)
T ss_pred ceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc----ccCCc
Confidence 9999999864 3334669999999999999996 68999999999999987631 1111221 22356
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeeccCCccce
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~ 476 (501)
.+..+.||..|..|++++ .|+.|.+|.-+..++..
T Consensus 258 ~~w~vSWS~sGn~LaVs~--GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSG--GDNKVTLWKENVDGKWE 292 (299)
T ss_pred ceEEEEEeccccEEEEec--CCcEEEEEEeCCCCcEE
Confidence 799999999999999998 66999999876665543
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.5e-27 Score=218.35 Aligned_cols=276 Identities=17% Similarity=0.256 Sum_probs=220.8
Q ss_pred eeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccc-cceecccCCcceeE-EEeeccCcCcccccCCCCcCcE
Q 010784 103 DVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY-YRATLSDHKARITC-MRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 103 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~~~~h~~~V~~-~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
..+...|...|..++..+ +..+++++.|+++++|+-..+.. ..+.+.+|.+-|.+ ++|.+. ++..
T Consensus 7 s~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~------------~~~~ 73 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES------------DKGR 73 (745)
T ss_pred EEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc------------cCcc
Confidence 345556666676666554 45889999999999999864322 23567889998887 888762 6778
Q ss_pred EEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784 181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
+++|+.|++|.+|. ....+.++++|+..|.|+... .++. ++|||.|.++++|.... +...+.+|+
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~----~~~~-~iSgSWD~TakvW~~~~--------l~~~l~gH~ 140 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG----EDGT-LISGSWDSTAKVWRIGE--------LVYSLQGHT 140 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecC----CcCc-eEecccccceEEecchh--------hhcccCCcc
Confidence 99999999999998 777889999999999999863 4444 99999999999998865 456699999
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
..|+++...|. . .++|||.|.+|++|.-.+ .+
T Consensus 141 asVWAv~~l~e-~-~~vTgsaDKtIklWk~~~----------------------------------------------~l 172 (745)
T KOG0301|consen 141 ASVWAVASLPE-N-TYVTGSADKTIKLWKGGT----------------------------------------------LL 172 (745)
T ss_pred hheeeeeecCC-C-cEEeccCcceeeeccCCc----------------------------------------------hh
Confidence 99999999873 3 899999999999997532 34
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
+++.+|.+.|..+++-+++. +++++.|+ |++|++ +++. +.++.+|+.-|+++....+ .++++++.|++++
T Consensus 173 ~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~------l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEV------LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCce------eeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 67889999999999987764 55666666 999999 4444 4889999999999995555 8888888999999
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
||+.. ++.+.+ ..+...|.++.+-++|..+ +|+ .||.|+||...
T Consensus 245 iW~~~--e~~q~I-----~lPttsiWsa~~L~NgDIv-vg~--SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD--ECVQVI-----TLPTTSIWSAKVLLNGDIV-VGG--SDGRVRVFTVD 288 (745)
T ss_pred EeecC--ceEEEE-----ecCccceEEEEEeeCCCEE-Eec--cCceEEEEEec
Confidence 99986 677777 3345688999888888655 455 45999999865
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.6e-28 Score=211.73 Aligned_cols=237 Identities=18% Similarity=0.271 Sum_probs=198.0
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
.+.++.|-.||.++|.|+..|.|+|+|..+ ...++.+.+|+.+|..+.|+|. ++..|++|+.|+.++
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~------------d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQ------------DNTMLVSGSDDKVVK 136 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEeccc------------CCeEEEecCCCceEE
Confidence 478899999999999999999999999766 5788999999999999999996 788999999999999
Q ss_pred Eec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 192 LWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 192 vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
+|| +...+..+.+|+..|.|.+|+| .++..++||+.||.|++||.+.... .+..+ .|..+|..+.+.|
T Consensus 137 ~~d~s~a~v~~~l~~htDYVR~g~~~~---~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el-nhg~pVe~vl~lp- 206 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGHTDYVRCGDISP---ANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL-NHGCPVESVLALP- 206 (487)
T ss_pred EEEcCCcEEEEEecCCcceeEeecccc---CCCeEEEecCCCceEEEEEeccCCc-----eeEEe-cCCCceeeEEEcC-
Confidence 999 4444557899999999999983 5667999999999999999998743 34444 5999999999998
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH 349 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 349 (501)
.+..+++++. ..|++||+.++. +.+..+..|...|+
T Consensus 207 sgs~iasAgG-n~vkVWDl~~G~-------------------------------------------qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 207 SGSLIASAGG-NSVKVWDLTTGG-------------------------------------------QLLTSMFNHNKTVT 242 (487)
T ss_pred CCCEEEEcCC-CeEEEEEecCCc-------------------------------------------eehhhhhcccceEE
Confidence 6778888775 579999998663 22233445899999
Q ss_pred EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
|+.+..++..|++|+-|+ +++||+.+.+.+ ..+. ..++|.+++.+|+ ..++.|-.||.+.+-+...
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv------~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVV------HSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEE------Eeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 999999999999999888 999998775543 5554 3789999999998 7777777999888775443
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=8.9e-29 Score=212.91 Aligned_cols=272 Identities=21% Similarity=0.265 Sum_probs=219.2
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
.|...++.+.|-++...+++|+.|..|++|+...++ ..+.+|.|-.+.|+.++|.+ ++.++++++.
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-------------~~~~~iAas~ 239 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-------------DNKHVIAASN 239 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-------------CCceEEeecC
Confidence 355669999999999999999999999999987642 37788899999999999998 7899999999
Q ss_pred CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
|+.+++|+ ..+...++.+|++.|+++.|. .....+++|+.|.+|+.||+.... +..++. ....+..|
T Consensus 240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~----~~~~~vVsgs~DRtiK~WDl~k~~------C~kt~l-~~S~cnDI 308 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK----LSHSRVVSGSADRTIKLWDLQKAY------CSKTVL-PGSQCNDI 308 (459)
T ss_pred CCceeeeeccchhhhhhhcccccceeeehhh----ccccceeeccccchhhhhhhhhhh------eecccc-ccccccce
Confidence 99999998 778889999999999999995 444459999999999999999865 344433 23445566
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCCCceEeee
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~ 341 (501)
... ...+++|..|++|++||+++...... ....+.+.++..+.++.-+.+ ++.+.++|+++.+....+
T Consensus 309 ~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~s------v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 309 VCS---ISDVISGHFDKKVRFWDIRSADKTRS------VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred Eec---ceeeeecccccceEEEeccCCceeeE------eecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 654 44789999999999999999865443 355666777766655544333 248999999999988777
Q ss_pred ccC----CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcc--cCeEEEEecCC-eEEEEecCCC
Q 010784 342 AIC----KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHV--GSVTQLHMDPY-KIVTGGRDDL 413 (501)
Q Consensus 342 ~~~----~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~-~~l~~gs~dg 413 (501)
... ....+.+.|||++.|+++|+.|+ |+||++.+++.. ..+.... ..|++++|+|. ..+++++.++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE------KVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE------EEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 643 33478999999999999999999 999999998765 4443322 36999999999 7777778999
Q ss_pred cEEEE
Q 010784 414 RINIW 418 (501)
Q Consensus 414 ~i~iw 418 (501)
.+.+|
T Consensus 454 ~v~lW 458 (459)
T KOG0288|consen 454 AVTLW 458 (459)
T ss_pred ceEec
Confidence 99999
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.9e-27 Score=190.39 Aligned_cols=268 Identities=13% Similarity=0.162 Sum_probs=221.9
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccce--ecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRA--TLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
..+..++.+++|+.+|..+++|+.|+++.+|+++.. +... ...+|.+.|-.++|.|. ..++|+++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~------------~~d~~ata 83 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPK------------HPDLFATA 83 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCC------------CCcceEEe
Confidence 445566899999999999999999999999999875 4333 35789999999999985 67899999
Q ss_pred eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+.|.+|++|| .+++........+.|. +.|+ |+|++++.++.|..|.+.|.++.+. ..-......+.
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~eni~-i~ws----p~g~~~~~~~kdD~it~id~r~~~~-------~~~~~~~~e~n 151 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKGENIN-ITWS----PDGEYIAVGNKDDRITFIDARTYKI-------VNEEQFKFEVN 151 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccCcceE-EEEc----CCCCEEEEecCcccEEEEEecccce-------eehhcccceee
Confidence 9999999999 7888887765555554 5665 8999999999999999999988652 22233455677
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC---cEEEEEcCCCceEe
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS---SVVTIDLRTMQKVM 339 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~ 339 (501)
-+.|+ .++++++.....|.|.|......+++..+. .++...+++.++|++.++++|+ .+.+||+...-+++
T Consensus 152 e~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~-----AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 152 EISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIK-----AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred eeeec-CCCCEEEEecCCceEEEEeccccccccccc-----cCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence 78888 466777777778999999888766554433 5668899999999999999886 79999999999999
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD 412 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d 412 (501)
.+..+.-+|..+.|+.+|++||+|++|. |-|=+..++..+ .+++ +.++...++|+|. .+||-+..|
T Consensus 226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~------~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV------WEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE------EEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999 999999998765 6665 5889999999999 666655443
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=205.07 Aligned_cols=237 Identities=17% Similarity=0.269 Sum_probs=201.6
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d 231 (501)
..++++...| ..+.+++|+.|..+.++| .++.+..++||...|+.+.|+ ++...+++++.|
T Consensus 220 pgi~ald~~~-------------s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~----~~~~~v~~aSad 282 (506)
T KOG0289|consen 220 PGITALDIIP-------------SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFH----KDLDTVITASAD 282 (506)
T ss_pred CCeeEEeecC-------------CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEec----cchhheeecCCc
Confidence 3577777776 568999999999999999 778889999999999999997 888999999999
Q ss_pred CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
..|+||...... .......|..+|+.+..+| .+.+|++++.||+..+.|++++..+...
T Consensus 283 ~~i~vws~~~~s------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~v-------------- 341 (506)
T KOG0289|consen 283 EIIRVWSVPLSS------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVV-------------- 341 (506)
T ss_pred ceEEeecccccc------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEE--------------
Confidence 999999988765 3667788999999999998 7889999999999999999988542110
Q ss_pred eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
.-....-.+++.+|+|||.+|.+|..|+ ++|||+.+.... ..|.+
T Consensus 342 ----------------------------s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~------a~Fpg 387 (506)
T KOG0289|consen 342 ----------------------------SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV------AKFPG 387 (506)
T ss_pred ----------------------------eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc------ccCCC
Confidence 0011123478999999999999999999 999999997655 89999
Q ss_pred cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
|.++|..++|+.+ .++++++.|+.|++||++..+...++... ....+.++.|.+.|++|+.++ ++-.|++++
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~----~~~~v~s~~fD~SGt~L~~~g--~~l~Vy~~~ 460 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD----EKKEVNSLSFDQSGTYLGIAG--SDLQVYICK 460 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc----ccccceeEEEcCCCCeEEeec--ceeEEEEEe
Confidence 9999999999999 99999999999999999988888887532 234799999999999999998 446666655
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=9.4e-28 Score=212.24 Aligned_cols=282 Identities=15% Similarity=0.162 Sum_probs=208.0
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC--ceeeec----cCCCCceEEEEeeecC
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG--SCQRCF----KGHNGPVSTLSDKLLG 218 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~--~~~~~~----~~h~~~v~~l~~s~~~ 218 (501)
...+++|+..|.++++.| .|..|+||+.|.+|++|| .| ...+.| ......|+++.|+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp-------------~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys--- 223 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDP-------------SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS--- 223 (641)
T ss_pred eEeccCCceEEEEeeecC-------------CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec---
Confidence 345788999999999999 899999999999999999 22 122222 2345689999997
Q ss_pred CCCCCEEEEeeCCCcEEEEeccCCCc------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 219 DGSGKILASGGEDATVRLWSLSSSGK------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 219 ~~~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
+.|..|++.+.....+++|-+.... ..-..-....++|...+++.+|+|.....|++++.||++++||+...+
T Consensus 224 -~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 224 -VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred -CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 6788888888888999999775432 001112334578999999999999889999999999999999998764
Q ss_pred cccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEE
Q 010784 293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTW 371 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iw 371 (501)
...+ ++.. ....+..-++++++|+++|.+||+|..|+ |.+|
T Consensus 303 ~q~q--------------------------------Vik~------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 303 SQLQ--------------------------------VIKT------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred hhee--------------------------------EEee------ccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 2111 0000 01112344678999999999999999999 9999
Q ss_pred ecCCCCCCCCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEee
Q 010784 372 DIRRSQDAVKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMA 447 (501)
Q Consensus 372 d~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s 447 (501)
+..+.... ..+..-..|.. .|+||.|+++ ++|++-+.|+++++||+++. +++.+..+- .....-+.++||
T Consensus 345 ~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL---~t~~~~tdc~FS 418 (641)
T KOG0772|consen 345 DKGSRTVR---PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL---PTPFPGTDCCFS 418 (641)
T ss_pred ecCCcccc---cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCC---CccCCCCccccC
Confidence 98654321 12233346766 8999999999 99999889999999999874 455555321 223456789999
Q ss_pred ccccEEEEeecC----CCceEEEeec---------------------cCCccceeecCCCCceeee
Q 010784 448 VSGCRIVTASYG----EPGLLQFRDF---------------------SNATCPVLKHEVQNDSKFW 488 (501)
Q Consensus 448 ~~g~~l~s~~~d----~~g~i~~w~~---------------------~~~~~~~~s~~~d~~~~~w 488 (501)
|+.++|++|++- ..|.+.+||- .+.-+.+..|+.||.++++
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 999999998763 4467888872 2333556678888988886
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.2e-27 Score=218.84 Aligned_cols=261 Identities=19% Similarity=0.289 Sum_probs=217.3
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce---eeeccCCCCceEE-EEeeec
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC---QRCFKGHNGPVST-LSDKLL 217 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~---~~~~~~h~~~v~~-l~~s~~ 217 (501)
.++.+.+.||...|..+++.+ +..++++|.||++++|+ .++. ...+.+|.+-|.+ +++-
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~--------------~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~-- 67 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD--------------GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYA-- 67 (745)
T ss_pred ceeEEEeccCccchheeEecC--------------CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceec--
Confidence 466788999999999999875 67899999999999998 3332 2457778888877 7774
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
..++..+++|+.|++|.+|.+.+.. +..++++|...|.+++... ++ .+++||.|.++++|-....
T Consensus 68 -e~~~~~l~~g~~D~~i~v~~~~~~~------P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~~~l------ 132 (745)
T KOG0301|consen 68 -ESDKGRLVVGGMDTTIIVFKLSQAE------PLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRIGEL------ 132 (745)
T ss_pred -cccCcceEeecccceEEEEecCCCC------chhhhhccccceeeeecCC-cC-ceEecccccceEEecchhh------
Confidence 2455679999999999999999877 5899999999999998763 44 4999999999999986543
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRS 376 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~ 376 (501)
...+++|+..|.++..-|++ .+++|+.|+ |++|.-.+
T Consensus 133 ----------------------------------------~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~- 170 (745)
T KOG0301|consen 133 ----------------------------------------VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT- 170 (745)
T ss_pred ----------------------------------------hcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-
Confidence 23467899999999999988 888899888 99998743
Q ss_pred CCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 377 QDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
. +.+|.+|..-|..+++-++ .++.+ +.||.|++|++ +|+++.++ .+|.+-+.+++...++..+++
T Consensus 171 -~------l~tf~gHtD~VRgL~vl~~~~flSc-sNDg~Ir~w~~-~ge~l~~~-----~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 171 -L------LKTFSGHTDCVRGLAVLDDSHFLSC-SNDGSIRLWDL-DGEVLLEM-----HGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred -h------hhhhccchhheeeeEEecCCCeEee-cCCceEEEEec-cCceeeee-----eccceEEEEEEecCCCCeEEE
Confidence 2 4899999999999999999 55555 69999999998 78899888 678899999998888999999
Q ss_pred eecCCCceEEEeeccC------------------CccceeecCCCCceeeecccC
Q 010784 456 ASYGEPGLLQFRDFSN------------------ATCPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 456 ~~~d~~g~i~~w~~~~------------------~~~~~~s~~~d~~~~~w~~~~ 492 (501)
++ +|+++++|+... ...-+++|++||.+++|....
T Consensus 237 ~g--EDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 237 TG--EDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ec--CCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99 889999998441 122367999999999998763
No 105
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1e-26 Score=221.85 Aligned_cols=230 Identities=18% Similarity=0.232 Sum_probs=172.6
Q ss_pred eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccc--cccceeeccCCC
Q 010784 184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRG--QQALKATLYGHE 258 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~ 258 (501)
|+.++.|++|+ ....+..+.+|.+.|.+++|+ |+ +++|++|+.||+|++||+.++.... ...+...+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafs----P~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFN----PCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEc----CCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 67789999998 445677889999999999997 54 7899999999999999998643200 011345678899
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
..|.+++|+|....++++++.|+.|++||+++++..
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~-------------------------------------------- 161 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA-------------------------------------------- 161 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------------------------
Confidence 999999999965566789999999999999887421
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEE-----EecCC-eEEEEecC
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQL-----HMDPY-KIVTGGRD 411 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-----~~~~~-~~l~~gs~ 411 (501)
..+. |...|.+++|+|+|.+|++++.|+ |+|||+++++.+ .++.+|.+.+... .|+++ .++++++.
T Consensus 162 ~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i------~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 162 FQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA------SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred EEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE------EEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence 1222 456799999999999999999888 999999997654 7788898765443 34567 55555445
Q ss_pred C----CcEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 412 D----LRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 412 d----g~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
| +.|+|||+++ ++++..+.. ..+.+.+......++|.++++|+ .|+.|++|++..+.
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~l---d~~~~~L~p~~D~~tg~l~lsGk--GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSI---DNASAPLIPHYDESTGLIYLIGK--GDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEe---cCCccceEEeeeCCCCCEEEEEE--CCCeEEEEEccCCc
Confidence 5 3799999995 556655522 11223333333455688899998 67999999998764
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=219.59 Aligned_cols=239 Identities=22% Similarity=0.289 Sum_probs=201.2
Q ss_pred cCcEEEEeeCCCceEEec----CC----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784 177 TENVLVTSSCDHSIRLWW----KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd----~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
.+++|+|||.||.|++|+ .+ ..+..+..|..-|+.+... .+++.|+++|.|-+|++|+......
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~----~~~~tlIS~SsDtTVK~W~~~~~~~---- 107 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC----GNGKTLISASSDTTVKVWNAHKDNT---- 107 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh----cCCCceEEecCCceEEEeecccCcc----
Confidence 678899999999999997 22 2466788899999999886 7888999999999999999987641
Q ss_pred cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc--ccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784 249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA--VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326 (501)
Q Consensus 249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (501)
-+..++..|...|.|+++...+..++++|+.|+.|.+||+.++.. +.....
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~--------------------------- 160 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN--------------------------- 160 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc---------------------------
Confidence 267889999999999999545788999999999999999998732 111110
Q ss_pred EEEEEcCCCceEeeec-cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784 327 VVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 403 (501)
.....+. ++...|++++.++.|..+++|+..+ +++||.++.+.+ ..+++|...|..+..+++
T Consensus 161 ---------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki------mkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 161 ---------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI------MKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred ---------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce------eeeeccccceEEEEEcCCC
Confidence 0111222 6789999999999999999999888 999999997765 889999999999999999
Q ss_pred eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
.-+.++|.||+|++||+...+++.++ ..|...|.++..+|+-.++.+|+ .+|.|..=|+.+.
T Consensus 226 t~~ls~sSDgtIrlWdLgqQrCl~T~-----~vH~e~VWaL~~~~sf~~vYsG~--rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQQRCLATY-----IVHKEGVWALQSSPSFTHVYSGG--RDGNIYRTDLRNP 287 (735)
T ss_pred CeEeecCCCceEEeeeccccceeeeE-----EeccCceEEEeeCCCcceEEecC--CCCcEEecccCCc
Confidence 67777789999999999999999999 56677799999999999999999 5699999887763
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-26 Score=193.26 Aligned_cols=241 Identities=22% Similarity=0.320 Sum_probs=191.6
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..+..|..++++++++ +.|+|+|+.|-+|+|||+.+ ...+..+..|.+.|+++.|.+.. ..+.|++
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll~HagsitaL~F~~~~-----------S~shLlS 102 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILLSHAGSITALKFYPPL-----------SKSHLLS 102 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcceeccccceEEEEecCCc-----------chhheee
Confidence 4566788889999997 68999999999999999998 47778888999999999999831 2348999
Q ss_pred eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
|+.||.|.+|+ .-.++..+++|.+.|+.++.+ |.+++-++.+.|+.++.||+-+++. ..+..+. +. -
T Consensus 103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH----PS~KLALsVg~D~~lr~WNLV~Gr~----a~v~~L~-~~--a 171 (362)
T KOG0294|consen 103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH----PSGKLALSVGGDQVLRTWNLVRGRV----AFVLNLK-NK--A 171 (362)
T ss_pred ecCCCcEEEEEcCCeEEeeeecccccccceeEec----CCCceEEEEcCCceeeeehhhcCcc----ceeeccC-Cc--c
Confidence 99999999999 557889999999999999998 8999999999999999999998864 1122222 22 2
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
+.+.|+| .+.+++.++.+ .|-+|.+.+........
T Consensus 172 t~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~------------------------------------------- 206 (362)
T KOG0294|consen 172 TLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIE------------------------------------------- 206 (362)
T ss_pred eeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhh-------------------------------------------
Confidence 3489997 66777777664 58899887764322111
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEe--cCC-eEEEEecCCCcEEE
Q 010784 342 AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM--DPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~~l~~gs~dg~i~i 417 (501)
.+..+.++.|. ++..+++|.++. |++||...... ...+.+|...|.++.+ .|. .++++.|.||.|+|
T Consensus 207 --~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~------~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 207 --NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP------LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred --ccccceeeeec-CCceEEEecCCceEEEeccCCCcc------ceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 12345566664 566788888888 99999998544 4899999999999984 445 89999999999999
Q ss_pred EeCCCc
Q 010784 418 WETDTG 423 (501)
Q Consensus 418 wd~~~~ 423 (501)
||++..
T Consensus 278 Wd~~~~ 283 (362)
T KOG0294|consen 278 WDIDME 283 (362)
T ss_pred EEcccc
Confidence 999875
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.6e-25 Score=197.77 Aligned_cols=354 Identities=13% Similarity=0.176 Sum_probs=252.3
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCee--------eEEEEecccccccceecccCCcceeEEEeeccCc-------
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQ--------NIKIDNFLSESYYRATLSDHKARITCMRLFPLHE------- 166 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~--------~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~------- 166 (501)
.+..+..|...|.|++++|+...+++|..-+ .+++||..+ ...++.+..-...|+|++|++.+.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~-L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT-LSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccc-ceeeeeeccccccceeeeecccCCCceEEEe
Confidence 3445666777899999999999999987765 599999766 355666666677799999987654
Q ss_pred --------------------------CcccccCCCCcCcEEEEeeCCCceEEec--CCcee---eeccCC-CCceEEEEe
Q 010784 167 --------------------------TSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ---RCFKGH-NGPVSTLSD 214 (501)
Q Consensus 167 --------------------------~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~---~~~~~h-~~~v~~l~~ 214 (501)
..++.+.|.|.+..++.....|.+.+|+ .+... ..|..+ ...|.|++|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 2345666667665444444578899998 22222 233333 367999999
Q ss_pred eecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784 215 KLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294 (501)
Q Consensus 215 s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 294 (501)
. ++ .-+++|..+|.|.||+..+... .+....|.+.|.+++... ++ .|++|+.|..|..|| ..-+.+
T Consensus 255 ~----en-gdviTgDS~G~i~Iw~~~~~~~------~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd-~~y~k~ 320 (626)
T KOG2106|consen 255 L----EN-GDVITGDSGGNILIWSKGTNRI------SKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWD-DNYRKL 320 (626)
T ss_pred c----CC-CCEEeecCCceEEEEeCCCceE------EeEeeecCCceEEEEEec-Cc-cEeecCccceEEecc-cccccc
Confidence 5 44 4678999999999999977653 444459999999999984 55 566799999999999 332222
Q ss_pred cceecccceecCCCceeeecCCCeEEEEeCCc-EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEe
Q 010784 295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSS-VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWD 372 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd 372 (501)
+.. ......+.+..+......+++.+... |..=.++++- .....+|......++.+|+...+++++.|+ +++|+
T Consensus 321 r~~---elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 321 RET---ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccc---cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 222 22234455555555555566666553 3333444433 344567888999999999999999999999 99999
Q ss_pred cCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784 373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 452 (501)
..+. ..+.. -..++.++.|+|...++.|+..|...+.|.++...+..- .. ..++++++|+|+|.+
T Consensus 397 --~~k~------~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-----~d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 397 --DHKL------EWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-----TD-NEQLSVVRYSPDGAF 461 (626)
T ss_pred --CCce------eEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccceeEEEE-----ec-CCceEEEEEcCCCCE
Confidence 2221 12222 356789999999988888899999999999985555443 22 678999999999999
Q ss_pred EEEeecCCCceEEEeeccCC-----------------------ccceeecCCCCceeeeccc
Q 010784 453 IVTASYGEPGLLQFRDFSNA-----------------------TCPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 453 l~s~~~d~~g~i~~w~~~~~-----------------------~~~~~s~~~d~~~~~w~~~ 491 (501)
||.|+ +|+.|++|.++.+ .+.+.+.+.|-.+-+|...
T Consensus 462 lAvgs--~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 462 LAVGS--HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEec--CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 99999 6799999876544 4445566666667777443
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-27 Score=190.27 Aligned_cols=252 Identities=19% Similarity=0.208 Sum_probs=201.1
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
|...|..+.++-.|+.|||++.|++|+|+..+++. +++.+|.||.++|+.++|... .-|.+||++++
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP-----------k~G~iLAScsY 78 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP-----------KFGTILASCSY 78 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc-----------ccCcEeeEeec
Confidence 44457778888889999999999999999998764 678899999999999999641 16899999999
Q ss_pred CCceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 187 DHSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 187 dg~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
||.|.||. .+ ........|...|++++|.| ..-|-.|++++.||.|.|.+.+.... .........|.-.|+
T Consensus 79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wap--heygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAP--HEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVN 153 (299)
T ss_pred CceEEEEecCCCchhhhhhhhhhcccceeecccc--cccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccc
Confidence 99999998 22 23445678999999999964 45678999999999999999987621 223455678999999
Q ss_pred EEEEeecC--C-----------eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEE
Q 010784 263 LMSVAGHK--S-----------FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVT 329 (501)
Q Consensus 263 ~l~~~~~~--~-----------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 329 (501)
+++|.|.. + ..|++|+.|..|+||+...++-+
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~----------------------------------- 198 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK----------------------------------- 198 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-----------------------------------
Confidence 99999851 2 46999999999999998876321
Q ss_pred EEcCCCceEeeeccCCCcEEEEEEcCC----CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784 330 IDLRTMQKVMTPAICKPILHSFSIMPS----KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 403 (501)
...++.+|.+.|..++|.|. ..+|++++.|+ +.||..+.....-+.+. ++.....+..+.|+..
T Consensus 199 -------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl---l~~f~~~~w~vSWS~sG 268 (299)
T KOG1332|consen 199 -------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL---LEEFPDVVWRVSWSLSG 268 (299)
T ss_pred -------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc---cccCCcceEEEEEeccc
Confidence 12357889999999999996 36899999999 99998874322212222 3334678999999999
Q ss_pred eEEEEecCCCcEEEEeCC
Q 010784 404 KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 404 ~~l~~gs~dg~i~iwd~~ 421 (501)
.+|+.++.|+.|.+|.-.
T Consensus 269 n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 269 NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEecCCcEEEEEEeC
Confidence 888888899999999743
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=203.08 Aligned_cols=252 Identities=19% Similarity=0.260 Sum_probs=213.0
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee----e-------------ec-cCC
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ----R-------------CF-KGH 205 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~----~-------------~~-~~h 205 (501)
...+..|.-+|.+++++| ++.+.++++.||+|.=|+ +++.. . .- ++|
T Consensus 135 ~~~~~~H~~s~~~vals~-------------d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h 201 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP-------------DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGH 201 (479)
T ss_pred ceeeccccCcceEEEeec-------------cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccc
Confidence 566778999999999999 889999999999999998 44321 0 11 278
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v 285 (501)
...+.+++.+ ++|++|++|+.|..|.||+.++.+ .++.+.+|.+.|.+++|-. +...+++++.|+.|++
T Consensus 202 ~keil~~avS----~Dgkylatgg~d~~v~Iw~~~t~e------hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 202 VKEILTLAVS----SDGKYLATGGRDRHVQIWDCDTLE------HVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKV 270 (479)
T ss_pred cceeEEEEEc----CCCcEEEecCCCceEEEecCcccc------hhhcccccccceeeeeeec-CccceeeeecCCceEE
Confidence 8899999997 899999999999999999999987 4888999999999999985 7788999999999999
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI 365 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 365 (501)
|++..... +.++-+|++.|.++....-++.+.+|+.
T Consensus 271 w~~~~~s~--------------------------------------------vetlyGHqd~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 271 WSIDQLSY--------------------------------------------VETLYGHQDGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred EehhHhHH--------------------------------------------HHHHhCCccceeeechhcccceEEeccc
Confidence 99987633 3456689999999999888999999988
Q ss_pred Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCC-------CC
Q 010784 366 GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPE-------EA 437 (501)
Q Consensus 366 d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 437 (501)
|+ +++|++..... ..+.+|.+.+-|++|-.+.-+++||.||.|.+|++...+++.+....++. .+
T Consensus 307 DrT~rlwKi~eesq-------lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~ 379 (479)
T KOG0299|consen 307 DRTVRLWKIPEESQ-------LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNG 379 (479)
T ss_pred cceeEEEeccccce-------eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccc
Confidence 88 99999955432 56778899999999999977778899999999999999988877543322 22
Q ss_pred CcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 438 DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 438 ~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
..+|++++..|...++++|+ .+|.|++|-+..+.+
T Consensus 380 ~~Witsla~i~~sdL~asGS--~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 380 NFWITSLAVIPGSDLLASGS--WSGCVRLWKIEDGLR 414 (479)
T ss_pred ccceeeeEecccCceEEecC--CCCceEEEEecCCcc
Confidence 34899999999999999999 569999999988843
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-27 Score=218.40 Aligned_cols=289 Identities=17% Similarity=0.256 Sum_probs=223.4
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEeccccc---ccceecccCC---cceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES---YYRATLSDHK---ARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~---~~~~~~~~h~---~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..+.+.|...++-..++.++. ..++|+.+.... ++...+++.. -.+..+.|... +.++|||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~------------~~NlIAT 105 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL------------YSNLIAT 105 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccc------------hhhhhee
Confidence 345788888888888877765 455666554321 1111111111 23556777643 6899999
Q ss_pred eeCCCceEEecC-----CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784 184 SSCDHSIRLWWK-----GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 184 ~~~dg~i~vwd~-----~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
++..|.|.+||. .+.+..|..|+..++++.|+ .....+|++|+.||+|++||++.... ..++.+..
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh---~tep~iliSGSQDg~vK~~DlR~~~S------~~t~~~nS 176 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFH---STEPNILISGSQDGTVKCWDLRSKKS------KSTFRSNS 176 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhccceeeeeec---cCCccEEEecCCCceEEEEeeecccc------cccccccc
Confidence 999999999992 34566789999999999998 46678999999999999999998774 77888888
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
..|+.+.|+|..++.|+++...|.+.+||++... +..
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------------------------------------------r~~ 213 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------------------------------------------RCE 213 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCch-------------------------------------------hHH
Confidence 9999999999999999999999999999999764 233
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec--CCC
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR--DDL 413 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs--~dg 413 (501)
..+..|.++|.++.|+|++.+||+|+.|+ |+|||+...+. .++.++.. ..+|.++.|-|. ..|++++ .|-
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dt 288 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDT 288 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEEee-cceeeeeeeccCccchhhhhhccccc
Confidence 46678999999999999999999999999 99999997653 34455543 678999999998 6677665 478
Q ss_pred cEEEEeCCCc-ccccccccCCCCCCCcceeeeEeec-cccEEEEeecCCCceEEEeeccCCccc
Q 010784 414 RINIWETDTG-MLANSLLCNYPEEADISTGCSAMAV-SGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 414 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
.|+|||++.. -+..++ ..|...++.++|.. |-..+.+++ .||.|..=.+.+...+
T Consensus 289 sV~VWDvrRPYIP~~t~-----~eH~~~vt~i~W~~~d~~~l~s~s--KD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 289 SVHVWDVRRPYIPYATF-----LEHTDSVTGIAWDSGDRINLWSCS--KDGTVLQHLFKNATTP 345 (839)
T ss_pred eEEEEeeccccccceee-----eccCccccceeccCCCceeeEeec--CccHHHHhhhhcccCh
Confidence 8999999764 344556 56788999999975 556778888 5588776555544443
No 112
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.7e-25 Score=204.89 Aligned_cols=355 Identities=14% Similarity=0.139 Sum_probs=250.1
Q ss_pred EEecCCCCceEEeeC---CcEEEeecCCeeeEEEEeccccc------------------------ccc------eecccC
Q 010784 106 FYSVAKPHDHILLDN---NDIFSTQGSSIQNIKIDNFLSES------------------------YYR------ATLSDH 152 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~---~~~~~~~g~~d~~i~vw~~~~~~------------------------~~~------~~~~~h 152 (501)
+.+|..-|..++|.. +..++|+++.|..|+||.+.-+. +.. ..+.||
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 344555588888873 45799999999999999864321 111 234599
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCce-----eeeccCCCCceEEEEeeecCCCCCC
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSC-----QRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~-----~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
.+.|+++.|+| .+..|++++.|.++.+|. +|-- +....+..+......|+ ++++
T Consensus 267 eDWV~sv~W~p-------------~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~----~n~~ 329 (764)
T KOG1063|consen 267 EDWVYSVWWHP-------------EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS----PNSN 329 (764)
T ss_pred ccceEEEEEcc-------------chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc----CCCC
Confidence 99999999999 788999999999999996 2221 12233445568888886 8889
Q ss_pred EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT 303 (501)
Q Consensus 224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 303 (501)
.+++-+.-|..++|..... ..+.....+.+|.+.|++++|.| .+.+|++.|.|.+-|++-.-..+...+ +.....
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~---~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wH-EiaRPQ 404 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDK---TFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWH-EIARPQ 404 (764)
T ss_pred EEEEecccCcEEEEeccCc---cceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccccccee-eecccc
Confidence 9999999999999993322 23445667789999999999998 678999999999999986552221100 111111
Q ss_pred ecCCCceeeecCC-CeEEEEeCC--cEEEEEc-------------------------------------------CCC--
Q 010784 304 SVPGVPVDMKCHE-SMLYIASGS--SVVTIDL-------------------------------------------RTM-- 335 (501)
Q Consensus 304 ~~~~~~~~~~~~~-~~~~~~~~~--~i~~~d~-------------------------------------------~~~-- 335 (501)
.+.....++.+-+ +..++..+. -+++|+. +++
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 1112222222222 222222211 1222111 000
Q ss_pred -------------------------------ceEeeeccCCCcEEEEEEcCCCcEEEEEcC-----Cc-EEEEecCCCCC
Q 010784 336 -------------------------------QKVMTPAICKPILHSFSIMPSKSLICTGGI-----GK-AMTWDIRRSQD 378 (501)
Q Consensus 336 -------------------------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-----d~-i~iwd~~~~~~ 378 (501)
..+..+.+|...|++++.+|+++++|+++. .. |++|+..+...
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 113455688999999999999999999982 33 99999998665
Q ss_pred CCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 379 AVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 379 ~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
. ..+.+|+-.|+.|+|+|+ ++|++.|.|+++.+|...... ...+.....+.|...|..+.|+|++.+++|+|
T Consensus 565 ~------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 565 V------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYFATAS 637 (764)
T ss_pred h------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc-chhhhhccccccceEEEEcccCcccceeEEec
Confidence 4 789999999999999999 888888999999999985432 22222222478899999999999999999999
Q ss_pred cCCCceEEEeeccCC--c----------------------------cceeecCCCCceeeeccc
Q 010784 458 YGEPGLLQFRDFSNA--T----------------------------CPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 458 ~d~~g~i~~w~~~~~--~----------------------------~~~~s~~~d~~~~~w~~~ 491 (501)
.|..|.+|..... . ..++.|-+.|.+.+|+..
T Consensus 638 --RDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 638 --RDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred --CCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 5699999986544 1 124567788888888855
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-27 Score=219.61 Aligned_cols=248 Identities=17% Similarity=0.238 Sum_probs=204.9
Q ss_pred CceEEee-CCcEEEeecCCeeeEEEEeccc--ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 113 HDHILLD-NNDIFSTQGSSIQNIKIDNFLS--ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 113 i~~~~~~-~~~~~~~~g~~d~~i~vw~~~~--~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
...+.|+ -+..+|||++..|.|.+||+.. ..+.+..|..|+..|+++.|++. ..++|++|+.||+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t------------ep~iliSGSQDg~ 157 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST------------EPNILISGSQDGT 157 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC------------CccEEEecCCCce
Confidence 4455555 4568999999999999999986 34677789999999999999985 6799999999999
Q ss_pred eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 190 IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 190 i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
|++|| ..+...++.+....|+.+.|+| ..+..|+++.+.|.+++||++.... +...+..|+++|.++.|+
T Consensus 158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp---~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFRSNSESIRDVKFSP---GYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWH 229 (839)
T ss_pred EEEEeeecccccccccccchhhhceeecc---CCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeec
Confidence 99999 6667778888899999999995 5688999999999999999998776 788899999999999999
Q ss_pred ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCc
Q 010784 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
| ++.+|+|||.|+.|+|||..+.+.- .+.++. ...+
T Consensus 230 P-nr~~lATGGRDK~vkiWd~t~~~~~------------------------------------------~~~tIn-Tiap 265 (839)
T KOG0269|consen 230 P-NREWLATGGRDKMVKIWDMTDSRAK------------------------------------------PKHTIN-TIAP 265 (839)
T ss_pred C-CCceeeecCCCccEEEEeccCCCcc------------------------------------------ceeEEe-ecce
Confidence 9 8899999999999999999875431 111222 2567
Q ss_pred EEEEEEcCCC-cEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784 348 LHSFSIMPSK-SLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 348 v~~v~~~~~~-~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~ 421 (501)
|..+.|-|.. ..|++++ .|. |+|||++.+- -|..++..|...++.++|... .++.+++.||+|..-.++
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeecccc-----ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 8999999974 5677766 566 9999999864 457889999999999999774 777788899998877776
Q ss_pred Cccccccc
Q 010784 422 TGMLANSL 429 (501)
Q Consensus 422 ~~~~~~~~ 429 (501)
++..-..+
T Consensus 341 nat~pid~ 348 (839)
T KOG0269|consen 341 NATTPIDL 348 (839)
T ss_pred cccChhhh
Confidence 65443333
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-25 Score=186.24 Aligned_cols=273 Identities=16% Similarity=0.231 Sum_probs=203.8
Q ss_pred cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec------CCceeeeccCCCCceEEEEeeecCCCCC
Q 010784 149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW------KGSCQRCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd------~~~~~~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
-.+|.+-|+++.|.+ -|+.+|+|+.|++|+||| +-.+....+.|.+.|..+.|.+ +.-|
T Consensus 9 ~s~h~DlihdVs~D~-------------~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh--PEfG 73 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDF-------------YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH--PEFG 73 (361)
T ss_pred ccCCcceeeeeeecc-------------cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC--cccc
Confidence 358999999999998 799999999999999998 2245566789999999999952 4568
Q ss_pred CEEEEeeCCCcEEEEeccCC--Cc-cccccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 223 KILASGGEDATVRLWSLSSS--GK-RGQQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~--~~-~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
+.+++++.|+++.||.-... +. ...+....++......|+.+.|.|. -+-.+++++.||.++||+.-..-.+....
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 99999999999999976321 11 1245556677788899999999985 47789999999999999976553322221
Q ss_pred cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC---CcEEEEEcCC------cEE
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS---KSLICTGGIG------KAM 369 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d------~i~ 369 (501)
..+.+. ..+.....+.....|+.|+|. ..+|+.|+++ .+.
T Consensus 154 Lq~Ei~-------------------------------~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~ 202 (361)
T KOG2445|consen 154 LQHEIQ-------------------------------NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVK 202 (361)
T ss_pred hhhhhh-------------------------------hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceE
Confidence 111110 000111134566788999875 6789999977 588
Q ss_pred EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-----eEEEEecCCCcEEEEeCCCcc------------ccccc---
Q 010784 370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-----KIVTGGRDDLRINIWETDTGM------------LANSL--- 429 (501)
Q Consensus 370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~l~~gs~dg~i~iwd~~~~~------------~~~~~--- 429 (501)
||........ ...+.++.+|..+|+.|+|.|+ .++|+++.|| |+||.+.... .+..+
T Consensus 203 Iye~~e~~rK--w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 203 IYEYNENGRK--WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred EEEecCCcce--eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 8877665422 4566888899999999999996 7899999999 9999997311 11111
Q ss_pred ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 430 LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
......+|.+.|..+.|+-.|..|++.| .||+|++|..+..
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStG--dDG~VRLWkany~ 320 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTG--DDGCVRLWKANYN 320 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecC--CCceeeehhhhhh
Confidence 1111257889999999999999999999 7799999985543
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=210.12 Aligned_cols=329 Identities=15% Similarity=0.178 Sum_probs=256.9
Q ss_pred EEecCCCCceEEeeCCcEEE-eecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 106 FYSVAKPHDHILLDNNDIFS-TQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
|......|+.+.|..||..+ |+|+..|.+.+||++.. +.+..+ ..|.+.|....|.| ....+++
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv~~~~fl~-------------~epVl~t 305 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSVTGATFLP-------------GEPVLVT 305 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCcccceecC-------------CCceEee
Confidence 33345789999999888655 67788899999999974 555544 48999999999998 7889999
Q ss_pred eeCCCceEEe--c----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc-------------
Q 010784 184 SSCDHSIRLW--W----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK------------- 244 (501)
Q Consensus 184 ~~~dg~i~vw--d----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~------------- 244 (501)
++.|+.+++| | ..+.++.-.||..+-.|+.|. ...|..+.+++.|++.+.+++.....
T Consensus 306 a~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy---~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 306 AGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY---GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred ccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee---ccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 9999999999 4 224566667999999999996 56788899999999888876643211
Q ss_pred ------------------------------------cc----------cccc-eee-----ccCCCCceeEEEEeecCCe
Q 010784 245 ------------------------------------RG----------QQAL-KAT-----LYGHEKPIKLMSVAGHKSF 272 (501)
Q Consensus 245 ------------------------------------~~----------~~~~-~~~-----~~~~~~~v~~l~~~~~~~~ 272 (501)
.+ .... ... ++.....+++++.++ .|+
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGN 461 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGN 461 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCc
Confidence 00 0000 011 111235678888886 788
Q ss_pred EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccCCCcEE
Q 010784 273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAICKPILH 349 (501)
Q Consensus 273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~ 349 (501)
..+.|+..|.|-+|++.++-....+. ....+.+.+..++.+.....+.++ +-+.+||..+...+..+.. ...+.
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~ 538 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSIT 538 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccc--cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcc
Confidence 99999999999999999985443321 233567778888877765444433 4799999999887777764 56778
Q ss_pred EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784 350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN 427 (501)
Q Consensus 350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~ 427 (501)
.+..+....+++.+.++- |+++|..+.+.+ +.+.+|.+.|++++|||+ +.+++++.|++|++||+.++.++.
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv------R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVV------REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhh------HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 888888888999999998 999999986554 999999999999999999 999999999999999999999998
Q ss_pred ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.+.. ..+.+.+.|||+|.+||++..| ..-|++|.
T Consensus 613 ~~~v------d~~~~sls~SPngD~LAT~Hvd-~~gIylWs 646 (910)
T KOG1539|consen 613 GLLV------DSPCTSLSFSPNGDFLATVHVD-QNGIYLWS 646 (910)
T ss_pred eEec------CCcceeeEECCCCCEEEEEEec-CceEEEEE
Confidence 8842 5678999999999999999864 34588886
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.9e-28 Score=221.06 Aligned_cols=252 Identities=20% Similarity=0.383 Sum_probs=217.6
Q ss_pred CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC 198 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~ 198 (501)
.+.+++.+..+-.+++|+.+ .+..|...|.++..-. .++.+++|+.|..+-+|. ....
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~-------------s~r~~~~Gg~~~k~~L~~i~kp~~ 62 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRK-------------SSRSLVTGGEDEKVNLWAIGKPNA 62 (825)
T ss_pred cccccceeeeeeccccccch-------hhhhhhhhhceeeeec-------------cceeeccCCCceeeccccccCCch
Confidence 34455566666677788855 2346888899988755 679999999999999998 4445
Q ss_pred eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS 278 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s 278 (501)
+..+.+|+.+|.++.|+ ....+|++|+.+|+|++||++... .+.++.+|...+..+.|+| -+.++++|+
T Consensus 63 i~S~~~hespIeSl~f~----~~E~LlaagsasgtiK~wDleeAk------~vrtLtgh~~~~~sv~f~P-~~~~~a~gS 131 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFD----TSERLLAAGSASGTIKVWDLEEAK------IVRTLTGHLLNITSVDFHP-YGEFFASGS 131 (825)
T ss_pred hheeeccCCcceeeecC----cchhhhcccccCCceeeeehhhhh------hhhhhhccccCcceeeecc-ceEEecccc
Confidence 66789999999999996 788899999999999999999877 4889999999999999998 688889999
Q ss_pred CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc
Q 010784 279 KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS 358 (501)
Q Consensus 279 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~ 358 (501)
.|+.+++||++.. .+.+.+.+|...+..+.|+|+|+
T Consensus 132 tdtd~~iwD~Rk~--------------------------------------------Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 132 TDTDLKIWDIRKK--------------------------------------------GCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred ccccceehhhhcc--------------------------------------------CceeeecCCcceeEEEeecCCCc
Confidence 9999999999854 23456677899999999999999
Q ss_pred EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCC
Q 010784 359 LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEE 436 (501)
Q Consensus 359 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~ 436 (501)
+++.|++|. ++|||...++.. .+|..|.+.+.++.|+|. -+++.|+.|+++++||+++.+.+... ..
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~-----~~ 236 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLS------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG-----KP 236 (825)
T ss_pred eeeccCCcceeeeecccccccc------cccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc-----CC
Confidence 999999999 999999997765 899999999999999999 89999999999999999999888877 34
Q ss_pred CCcceeeeEeeccccEEEEeec
Q 010784 437 ADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 437 ~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
....|.+.+|+|+++.+.+|..
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccCCceeeeecCCceeeecCch
Confidence 4678999999999999998864
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-25 Score=185.21 Aligned_cols=296 Identities=15% Similarity=0.154 Sum_probs=208.4
Q ss_pred cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC----Cceeeecc--CCCCceEEEEeeecC
Q 010784 145 YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK----GSCQRCFK--GHNGPVSTLSDKLLG 218 (501)
Q Consensus 145 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~----~~~~~~~~--~h~~~v~~l~~s~~~ 218 (501)
.+.+|++|.+.|++++|+. ||+.|+|++.|++|+||+. .+.-+.++ -.-+.-+.+.|.|
T Consensus 78 ~~~~LKgH~~~vt~~~FsS-------------dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap-- 142 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSS-------------DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP-- 142 (420)
T ss_pred hhhhhhccCCceeeeEEcC-------------CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--
Confidence 3457899999999999999 8999999999999999982 11111111 1122456778872
Q ss_pred CCCCCEEEEeeCCCcEEEEeccCCCccc-c-----ccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 219 DGSGKILASGGEDATVRLWSLSSSGKRG-Q-----QALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~-----~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
....++++.-...++++|.+....... . +.....-+.|.-.|..+-.. +++.+|++++.|..|.+|+++ ++
T Consensus 143 -Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 143 -DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred -CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cc
Confidence 334456666666789999876533200 0 00111223466667777776 478999999999999999999 65
Q ss_pred cccceecccceecCCCceeeecCCCeEEEEeCC---cEEEEEcC--------CCceEeeeccCCCcEEEEEEcCCCcEEE
Q 010784 293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS---SVVTIDLR--------TMQKVMTPAICKPILHSFSIMPSKSLIC 361 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~--------~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 361 (501)
.+.+... ....-.....+|++.+++..+ .+.+|.+- .-..+..+++|...|..++|+++.+.++
T Consensus 220 ~L~~idt-----nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 220 LLQSIDT-----NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeeeecc-----ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 5443322 222334456677888877765 79999762 2234678899999999999999999999
Q ss_pred EEcCCc-EEEEecCCCCCCCC-CCCcccc----cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC
Q 010784 362 TGGIGK-AMTWDIRRSQDAVK-PQPMAEL----DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP 434 (501)
Q Consensus 362 ~~~~d~-i~iwd~~~~~~~~~-~~~~~~~----~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~ 434 (501)
+.+.|+ ++|||+.-.-...+ ++.+.+. ....+....+..+|. ..++.+ ....++++..++|+...+++
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e---- 369 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE---- 369 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH----
Confidence 999999 99999864211100 1112221 112333448999999 888874 66789999999999888886
Q ss_pred CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 435 EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
..|...|.+++|+++|+++++++ |..+++..-.+
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcG---dr~vrv~~ntp 403 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCG---DRYVRVIRNTP 403 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeec---ceeeeeecCCC
Confidence 67888999999999999999995 47888876433
No 118
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=214.41 Aligned_cols=234 Identities=16% Similarity=0.250 Sum_probs=185.5
Q ss_pred eecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc----------------------------------
Q 010784 200 RCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK---------------------------------- 244 (501)
Q Consensus 200 ~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---------------------------------- 244 (501)
+.+. .|.+.|.+|.|+ ++|+|||+|+.||.|+||.+...+.
T Consensus 260 Qe~~~ah~gaIw~mKFS----~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFS----HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eccccccCCcEEEEEeC----CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3445 899999999998 8999999999999999998866100
Q ss_pred --------------------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 245 --------------------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 245 --------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
....+++..+.+|.+.|..|.|+ ..++|++++.|.+|++|++...+++
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL---------- 403 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECL---------- 403 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCccee----------
Confidence 11234567789999999999998 5679999999999999999876442
Q ss_pred cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKP 382 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 382 (501)
..|. |.+.|+||+|+| |.+||++|+-|+ ||||++...+.+
T Consensus 404 ----------------------------------~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv--- 445 (712)
T KOG0283|consen 404 ----------------------------------KVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV--- 445 (712)
T ss_pred ----------------------------------eEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE---
Confidence 2332 899999999999 689999999888 999999986543
Q ss_pred CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC----CCCCCcceeeeEeecccc-EEEEe
Q 010784 383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY----PEEADISTGCSAMAVSGC-RIVTA 456 (501)
Q Consensus 383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~-~l~s~ 456 (501)
....-..-|++++|.|+ +..+.|+.+|.+++|++...+....+..+. ...|. .|+++.|.|... .+++.
T Consensus 446 ----~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 446 ----DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT 520 (712)
T ss_pred ----eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe
Confidence 23333478999999999 999999999999999998877665543211 12233 799999997543 35555
Q ss_pred ecCCCceEEEeec-----------------------cCCccceeecCCCCceeeecccCCC
Q 010784 457 SYGEPGLLQFRDF-----------------------SNATCPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 457 ~~d~~g~i~~w~~-----------------------~~~~~~~~s~~~d~~~~~w~~~~~~ 494 (501)
+ +|..|+|+|. ..++++++++++|..+.+|+.+...
T Consensus 521 S--nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 521 S--NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred c--CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 5 6799999994 3577889999999999999986554
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=198.83 Aligned_cols=334 Identities=12% Similarity=0.134 Sum_probs=248.6
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc-ceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA-RITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.|.+|.++|++.+...+|.+-.+|.|.+|++..+......+.++.+ .|.+++|++ +..|++.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--------------~~RLFS~g~s 89 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--------------GGRLFSSGLS 89 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--------------CCeEEeecCC
Confidence 4677999999999999999999999999999987777778888765 599999995 6889999999
Q ss_pred CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
|.|.-|| +++....+....+.|.+++.+ +.+..++.|++||.+..++...+.. .....+...++.|.+++
T Consensus 90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~----p~~~~l~IgcddGvl~~~s~~p~~I----~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSNGGAIWSIAIN----PENTILAIGCDDGVLYDFSIGPDKI----TYKRSLMRQKSRVLSLS 161 (691)
T ss_pred ceEEEEecccCceeEEecCCCcceeEEEeC----CccceEEeecCCceEEEEecCCceE----EEEeecccccceEEEEE
Confidence 9999999 888888888889999999996 7889999999999777777766542 23344555678999999
Q ss_pred EeecCCeEEEEEeCCCeEEEEECCCCccccceec-ccce--ecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEee
Q 010784 266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC-VGMT--SVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMT 340 (501)
Q Consensus 266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~ 340 (501)
|.+ ++..+++|+.||.|++||..++..+..... .... .....++++.+-.+..+++.+ |.|.+||...+..+..
T Consensus 162 w~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 162 WNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred ecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhh
Confidence 998 788899999999999999998876441111 1111 133445666666666666654 5899999999999999
Q ss_pred eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEe
Q 010784 341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWE 419 (501)
Q Consensus 341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd 419 (501)
+..|...|.+++..+++.++++++-|+ |..|...+.+.. .........|...|.+++..++ .+.+|+.|..+.+-.
T Consensus 241 ~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICS 317 (691)
T ss_pred hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc--eeeeccccCCcccceeeeeecc-eEEecceeeEEEEcc
Confidence 999999999999999999999999777 777777665431 2222344567777888877776 444445666665543
Q ss_pred CCCcc----------------------------------------c--c----cccccCCCCCCCcceeeeEeeccccEE
Q 010784 420 TDTGM----------------------------------------L--A----NSLLCNYPEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 420 ~~~~~----------------------------------------~--~----~~~~~~~~~~~~~~v~~~~~s~~g~~l 453 (501)
.+..+ . . .....+........|.+.+.||+|++|
T Consensus 318 s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~I 397 (691)
T KOG2048|consen 318 SREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLI 397 (691)
T ss_pred ccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEE
Confidence 32200 0 0 000000001224558888999999999
Q ss_pred EEeecCCCceEEEeeccC
Q 010784 454 VTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~ 471 (501)
+.+.. ..+++|.++.
T Consensus 398 a~st~---~~~~iy~L~~ 412 (691)
T KOG2048|consen 398 AISTV---SRTKIYRLQP 412 (691)
T ss_pred EEeec---cceEEEEecc
Confidence 99864 4677777665
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7e-25 Score=181.64 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=194.4
Q ss_pred CCceEEeeC-CcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 112 PHDHILLDN-NDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 112 ~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
.|.+|+||| ...+++.|+-|++|++|+++.. ...-+....|.++|.+++|+. +|..+++|+.|+.
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-------------dgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-------------DGSKVFSGGCDKQ 95 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-------------CCceEEeeccCCc
Confidence 399999999 6667779999999999999863 333466778999999999999 8999999999999
Q ss_pred eEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 190 IRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 190 i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
+++|| ....+..+..|.++|.++.|-+ ......|++||.|.+|+.||.+... ++.++. -.+.+.++...
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~--~~~~~cl~TGSWDKTlKfWD~R~~~------pv~t~~-LPeRvYa~Dv~- 165 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDAPVKTCHWVP--GMNYQCLVTGSWDKTLKFWDTRSSN------PVATLQ-LPERVYAADVL- 165 (347)
T ss_pred eEEEEccCCCeeeeeecccceeEEEEec--CCCcceeEecccccceeecccCCCC------eeeeee-ccceeeehhcc-
Confidence 99999 4446777788999999999962 2234589999999999999999765 355554 35567777664
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCC--ceEeeeccCC
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTM--QKVMTPAICK 345 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~--~~~~~~~~~~ 345 (501)
..+++.+..+..|.+|+++.+....... ...+......+++-.+.+...+++ .+.+.+..+..+ +.-.+++-|.
T Consensus 166 --~pm~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 166 --YPMAVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred --CceeEEEecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence 3378888899999999998765432211 111122222333333344444433 456666666554 4445566554
Q ss_pred ---------CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE
Q 010784 346 ---------PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG 408 (501)
Q Consensus 346 ---------~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~ 408 (501)
..|++|+|+|.-..|++++.|+ +.+||-.....+ .+.+.|..+|++..|+.+ .+++-
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL------k~s~~~~qpItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL------KTSETHPQPITCCSFNRNGSIFAY 310 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh------hccCcCCCccceeEecCCCCEEEE
Confidence 2478899999877788877777 999998876554 777889999999999987 55443
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=8.3e-26 Score=199.41 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=222.8
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc--cccceecc--cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE--SYYRATLS--DHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
.|..-|..++++...+++.||+. |.|+|||+... +.++..|. .....|.++.++| ||+.|++
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-------------dgrtLiv 482 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-------------DGRTLIV 482 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-------------CCceEEe
Confidence 34444788899999999999986 88999998742 12222221 2345677888887 8999999
Q ss_pred eeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 184 SSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 184 ~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
|+.-.++.||| +......+....-...+++.+ +|.+..+++..||.|.|||+.... ++..+.+|+.
T Consensus 483 GGeastlsiWDLAapTprikaeltssapaCyALa~s----pDakvcFsccsdGnI~vwDLhnq~------~VrqfqGhtD 552 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS----PDAKVCFSCCSDGNIAVWDLHNQT------LVRQFQGHTD 552 (705)
T ss_pred ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC----CccceeeeeccCCcEEEEEcccce------eeecccCCCC
Confidence 99999999999 222223343334456677775 899999999999999999999865 6999999999
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.+.||.+++ ++..|.||+-|.+|+-||++++..+...
T Consensus 553 GascIdis~-dGtklWTGGlDntvRcWDlregrqlqqh------------------------------------------ 589 (705)
T KOG0639|consen 553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQH------------------------------------------ 589 (705)
T ss_pred CceeEEecC-CCceeecCCCccceeehhhhhhhhhhhh------------------------------------------
Confidence 999999996 8999999999999999999988543221
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
.....|.++..+|++.+++.|..++ +.+......+. ..+..|..-|.++.|.+. +++++.+.|..+..
T Consensus 590 ---dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-------yqlhlheScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 590 ---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred ---hhhhhheecccCCCccceeeecccCcEEEEecCCccc-------eeecccccEEEEEEecccCceeeecCchhhhhh
Confidence 1256789999999999999999888 98888876543 566778999999999999 88888789999999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
|...-|..+...+ ..+.|.++.+|.|.++|++|+ .|..-.||.+
T Consensus 660 wrtPyGasiFqsk------E~SsVlsCDIS~ddkyIVTGS--GdkkATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIFQSK------ESSSVLSCDISFDDKYIVTGS--GDKKATVYEV 703 (705)
T ss_pred ccCccccceeecc------ccCcceeeeeccCceEEEecC--CCcceEEEEE
Confidence 9998888777763 367899999999999999999 4466666654
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.3e-24 Score=169.26 Aligned_cols=251 Identities=14% Similarity=0.208 Sum_probs=193.4
Q ss_pred CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc------CCCcccccc---ceeeccCCCCceeEEEEeecCCeEEE
Q 010784 205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS------SSGKRGQQA---LKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 205 h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~------~~~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
....|.+++|+ |.|.+.+.|+...+++|.... ...+..+++ ....-+.|.+.|.|.+|+| .+.+++
T Consensus 31 dsqairav~fh----p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVAFH----PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIA 105 (350)
T ss_pred chhheeeEEec----CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEE
Confidence 56789999998 899999999999999887432 222222222 2234467899999999998 899999
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC----CeEEEEeCC----cEEEEEcCCCceEeeeccCCCc
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE----SMLYIASGS----SVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
+|+.|.+|++.-.+...............+++.+..+.+-+ ...++++++ .|++-|...++..+.+.+|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 99999999998776544322222222235566666665532 344555543 7888899999999999999999
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC---cccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG---HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
|.++ ++-++.++++|+.|. |++||++-..++ ...-..+.+ ....|.+++++|. +++++|-.|....+||++.
T Consensus 186 ilal-yswn~~m~~sgsqdktirfwdlrv~~~v--~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 186 ILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV--NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred EEEE-EEecCcEEEccCCCceEEEEeeecccee--eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 9887 355889999999999 999999987655 111112222 1357999999999 9999999999999999999
Q ss_pred cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
++.++.+ ..|...|.++.|||...++.++++| ..|++-|+.
T Consensus 263 ~r~iq~f-----~phsadir~vrfsp~a~yllt~syd--~~ikltdlq 303 (350)
T KOG0641|consen 263 GRMIQRF-----HPHSADIRCVRFSPGAHYLLTCSYD--MKIKLTDLQ 303 (350)
T ss_pred Cceeeee-----CCCccceeEEEeCCCceEEEEeccc--ceEEEeecc
Confidence 9999999 6788999999999999999999977 888888865
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.1e-25 Score=191.01 Aligned_cols=286 Identities=12% Similarity=0.130 Sum_probs=227.5
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCC
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDH 188 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg 188 (501)
.+|++|.|+|....+++++.|+.+++|.+... +..++.+.--..+|.+..|.| +|. .+++++.-.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-------------~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-------------NGHSVIFTSGRRK 280 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-------------CCceEEEecccce
Confidence 45999999999999999999999999998742 234445555567888888888 777 899999999
Q ss_pred ceEEec--CCce--eeeccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 189 SIRLWW--KGSC--QRCFKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 189 ~i~vwd--~~~~--~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
..+.|| +.+. +....++. ..+.....+ +++++|+..+..|.|.+....+++ .+..++ -.+.|..
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS----hd~~fia~~G~~G~I~lLhakT~e------li~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVS----HDSNFIAIAGNNGHIHLLHAKTKE------LITSFK-IEGVVSD 349 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEec----CCCCeEEEcccCceEEeehhhhhh------hhheee-eccEEee
Confidence 999999 3322 23334444 345566665 889999999999999999999886 466665 5778999
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 343 (501)
+.|+. ++..|++++.+|.|.+||+++...+.. +..
T Consensus 350 ~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~r--------------------------------------------f~D 384 (514)
T KOG2055|consen 350 FTFSS-DSKELLASGGTGEVYVWNLRQNSCLHR--------------------------------------------FVD 384 (514)
T ss_pred EEEec-CCcEEEEEcCCceEEEEecCCcceEEE--------------------------------------------Eee
Confidence 99995 788899999999999999998744322 111
Q ss_pred CCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec--CCCcEEE
Q 010784 344 CKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR--DDLRINI 417 (501)
Q Consensus 344 ~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs--~dg~i~i 417 (501)
.+ .-++++.++++.+||+|++.+ |.|||..+......++|+.++..-...|++|+|+++ +++|.+| .+..+++
T Consensus 385 -~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 385 -DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred -cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 12 235778889999999999999 999998775555557888988888899999999999 8887765 4678999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
-.+.+......++... ..-+.++|++|||.|.+|+.|. +.|.+.+|.+.
T Consensus 464 VHvPS~TVFsNfP~~n--~~vg~vtc~aFSP~sG~lAvGN--e~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSN--TKVGHVTCMAFSPNSGYLAVGN--EAGRVHLFKLH 512 (514)
T ss_pred EeccceeeeccCCCCC--CcccceEEEEecCCCceEEeec--CCCceeeEeec
Confidence 9999888877775442 3467799999999999999998 77999999864
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=193.90 Aligned_cols=265 Identities=13% Similarity=0.203 Sum_probs=210.6
Q ss_pred EEEeecC-CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee
Q 010784 123 IFSTQGS-SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ 199 (501)
Q Consensus 123 ~~~~~g~-~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~ 199 (501)
.|++++. ....+.+|.+....+. ....--.++|.|++-+| +|.+|+.|...|.|++|. +|..+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~-~q~~v~Pg~v~al~s~n-------------~G~~l~ag~i~g~lYlWelssG~LL 116 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQV-VQYIVLPGPVHALASSN-------------LGYFLLAGTISGNLYLWELSSGILL 116 (476)
T ss_pred hheeeecccCccccccccCchhhh-hhhcccccceeeeecCC-------------CceEEEeecccCcEEEEEeccccHH
Confidence 4555443 3568889998864222 22334567899999998 889999998999999998 99999
Q ss_pred eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCC---CccccccceeeccCCCCceeEEEEeec-CCeEEE
Q 010784 200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSS---GKRGQQALKATLYGHEKPIKLMSVAGH-KSFLLV 275 (501)
Q Consensus 200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~ 275 (501)
..+.+|-.+|+|+.|+ .||.+|+||+.||.|.+|.+..- .......+...+..|+-+|+++...+. ...+++
T Consensus 117 ~v~~aHYQ~ITcL~fs----~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 117 NVLSAHYQSITCLKFS----DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred HHHHhhccceeEEEEe----CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 9999999999999998 89999999999999999987542 112234578889999999999999864 356899
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP 355 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~ 355 (501)
|+|.|.++++||+..+..+... . ....+.+++.+|
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti--------------------------------------------~-fp~si~av~lDp 227 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTI--------------------------------------------T-FPSSIKAVALDP 227 (476)
T ss_pred EecCCceEEEEEeccceeeEEE--------------------------------------------e-cCCcceeEEEcc
Confidence 9999999999999888543221 1 367789999999
Q ss_pred CCcEEEEEcCCc-EEEEecCCCC--CC--------CCCCCcccccCccc--CeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 356 SKSLICTGGIGK-AMTWDIRRSQ--DA--------VKPQPMAELDGHVG--SVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 356 ~~~~l~~~~~d~-i~iwd~~~~~--~~--------~~~~~~~~~~~h~~--~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
-++.+++|+.++ |.+.++.... .. .....+..+.+|.+ .|+|++++-+ .++++|+.||.|+|||+.
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 999999999888 9888876543 11 12344567788988 9999999999 999999999999999999
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
+.++++++. ...++|+.+.+.|-.+-++.
T Consensus 308 S~Q~iRtl~-----~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 308 SKQCIRTLQ-----TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hHHHHHHHh-----hhccccceeEeeccccceec
Confidence 999999993 24678888888765444444
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.6e-24 Score=189.27 Aligned_cols=333 Identities=14% Similarity=0.166 Sum_probs=246.8
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
+.|.|++|.++|.. +||..+|.|.||+..+. +..+....|.+.|.++.... +|. |++|+.|..|
T Consensus 247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr-------------~Gt-llSGgKDRki 310 (626)
T KOG2106|consen 247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLR-------------DGT-LLSGGKDRKI 310 (626)
T ss_pred eEEEEEEEcCCCCE-EeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEec-------------Ccc-EeecCccceE
Confidence 44999999999875 58999999999999874 66666669999999999987 555 5569999999
Q ss_pred EEec-CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 191 RLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 191 ~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
..|| .-+.+ ..+....++|..++= ..+. |+.|...+.|..=.++++- .....+|......++.+
T Consensus 311 ~~Wd~~y~k~r~~elPe~~G~iRtv~e-----~~~d-i~vGTtrN~iL~Gt~~~~f-------~~~v~gh~delwgla~h 377 (626)
T KOG2106|consen 311 ILWDDNYRKLRETELPEQFGPIRTVAE-----GKGD-ILVGTTRNFILQGTLENGF-------TLTVQGHGDELWGLATH 377 (626)
T ss_pred EeccccccccccccCchhcCCeeEEec-----CCCc-EEEeeccceEEEeeecCCc-------eEEEEecccceeeEEcC
Confidence 9998 32322 345567788988872 3333 7777777777766776653 45667899999999999
Q ss_pred ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC---CcEEEEEcCCCceEeeeccC
Q 010784 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG---SSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~ 344 (501)
| +.+++++++.|+.+++|+ ..+ ..-.........+..+++.+ .++.| +...+.|.++...+.....
T Consensus 378 p-s~~q~~T~gqdk~v~lW~--~~k------~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d- 446 (626)
T KOG2106|consen 378 P-SKNQLLTCGQDKHVRLWN--DHK------LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD- 446 (626)
T ss_pred C-ChhheeeccCcceEEEcc--CCc------eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-
Confidence 8 677899999999999999 332 22233455667778888887 44443 4788889999655554444
Q ss_pred CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 345 KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
..+++.++|+|+|.+||.|+.|+ |+||.+...... ...+... +..+|+.+.|+++ +++.+-|.|-.|..|....
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~--y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK--YSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE--EEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 88999999999999999999999 999999876543 1222223 3489999999999 9999999999999995433
Q ss_pred ccccccc--------------ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc------------------
Q 010784 423 GMLANSL--------------LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS------------------ 470 (501)
Q Consensus 423 ~~~~~~~--------------~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~------------------ 470 (501)
-+.+... ... ...+...+..++-+.+.+++++|. +.|.|+++...
T Consensus 523 ~~~~ts~kDvkW~t~~c~lGF~v~-g~s~~t~i~a~~rs~~~~~lA~gd--d~g~v~lf~yPc~s~rA~~he~~ghs~~v 599 (626)
T KOG2106|consen 523 CKQITSVKDVKWATYTCTLGFEVF-GGSDGTDINAVARSHCEKLLASGD--DFGKVHLFSYPCSSPRAPSHEYGGHSSHV 599 (626)
T ss_pred CcccceecceeeeeeEEEEEEEEe-cccCCchHHHhhhhhhhhhhhccc--cCceEEEEccccCCCcccceeecccccee
Confidence 2222111 000 123456677788888889999887 78999999732
Q ss_pred ------CCccceeecCCCCceeeecc
Q 010784 471 ------NATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 471 ------~~~~~~~s~~~d~~~~~w~~ 490 (501)
.+...+++.+.|.++..|++
T Consensus 600 t~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 600 TNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EEEEEeeCCceEEecCCCceEEEEEe
Confidence 33334444448888998875
No 126
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=5.7e-25 Score=212.02 Aligned_cols=268 Identities=16% Similarity=0.198 Sum_probs=215.1
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEEee--CCCceEEecC--------------CceeeeccCCCCceEEEEee
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSS--CDHSIRLWWK--------------GSCQRCFKGHNGPVSTLSDK 215 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~vwd~--------------~~~~~~~~~h~~~v~~l~~s 215 (501)
+...|.+++.+| ++..++||+ .||.++||+. .+.+.+...|.+.|+|+.|+
T Consensus 12 ~~~~IfSIdv~p-------------dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHP-------------DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecC-------------CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC
Confidence 345688999988 899999999 9999999961 12334556799999999997
Q ss_pred ecCCCCCCEEEEeeCCCcEEEEeccCC------------CccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeE
Q 010784 216 LLGDGSGKILASGGEDATVRLWSLSSS------------GKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKV 283 (501)
Q Consensus 216 ~~~~~~~~~l~sg~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v 283 (501)
++|.+||+|++|+.|.||..... .....++....+.+|...|..++|+| ++.++++++.|++|
T Consensus 79 ----~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 79 ----PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSV 153 (942)
T ss_pred ----CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceE
Confidence 89999999999999999998831 11234667888999999999999999 88899999999999
Q ss_pred EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
.+||.++. +.+..+.+|.+.|..+.|.|-|+|||+-
T Consensus 154 iiwn~~tF--------------------------------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASq 189 (942)
T KOG0973|consen 154 IIWNAKTF--------------------------------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQ 189 (942)
T ss_pred EEEccccc--------------------------------------------eeeeeeecccccccceEECCccCeeeee
Confidence 99998876 3456788999999999999999999999
Q ss_pred cCCc-EEEEecCCCCCCCCCCCcccccCc------ccCeEEEEecCC-eEEEEec----CCCcEEEEeCCCccccccccc
Q 010784 364 GIGK-AMTWDIRRSQDAVKPQPMAELDGH------VGSVTQLHMDPY-KIVTGGR----DDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 364 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~-~~l~~gs----~dg~i~iwd~~~~~~~~~~~~ 431 (501)
++|+ |++|++.+.... +.+..+ ...+..+.|+|+ .+|++.- .-..+.|.+-.+.+.-..|
T Consensus 190 sdDrtikvwrt~dw~i~------k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L-- 261 (942)
T KOG0973|consen 190 SDDRTLKVWRTSDWGIE------KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL-- 261 (942)
T ss_pred cCCceEEEEEcccceee------EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee--
Confidence 9999 999997764332 222222 345788999999 8887742 2346888888777777788
Q ss_pred CCCCCCCcceeeeEeecc-------------c----cEEEEeecCCCceEEEeec----------------------cCC
Q 010784 432 NYPEEADISTGCSAMAVS-------------G----CRIVTASYGEPGLLQFRDF----------------------SNA 472 (501)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~-------------g----~~l~s~~~d~~g~i~~w~~----------------------~~~ 472 (501)
.+|..++.+++|+|. . ..+|+|+ .|+.|.||.. +++
T Consensus 262 ---vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd 336 (942)
T KOG0973|consen 262 ---VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD 336 (942)
T ss_pred ---ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec--CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCC
Confidence 678889999999982 1 1566777 7799999983 355
Q ss_pred ccceeecCCCCceeeecccCCC
Q 010784 473 TCPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 473 ~~~~~s~~~d~~~~~w~~~~~~ 494 (501)
+..+...|.||++.+..++..+
T Consensus 337 G~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 337 GFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCeEEEEecCCeEEEEEcchHH
Confidence 6667788999999999887554
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.6e-25 Score=193.26 Aligned_cols=257 Identities=19% Similarity=0.227 Sum_probs=202.3
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
+...|.+++|++-+|+|.|++.|...+.+++|.+.+| .++..+.+|...|+|+.|+. ||.+|+|||
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-------------dgs~iiTgs 142 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-------------DGSHIITGS 142 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-------------CCcEEEecC
Confidence 4456788999999999999999999999999999996 89999999999999999998 899999999
Q ss_pred CCCceEEec-----------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 186 CDHSIRLWW-----------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 186 ~dg~i~vwd-----------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
.||.|.+|. .-+.+..+..|+-+|+++...+ .+...+|+|+|.|.++++||+..+. ++.++
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~--Gg~~~rl~TaS~D~t~k~wdlS~g~------LLlti 214 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS--GGTNARLYTASEDRTIKLWDLSLGV------LLLTI 214 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC--CCccceEEEecCCceEEEEEeccce------eeEEE
Confidence 999999995 2345678889999999998752 2245799999999999999999986 34444
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
. ....+.++++.| .+..++.|+.+|.|.+.++......+.... .+.++ ..
T Consensus 215 ~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~---------------------------~k~~~-~~ 264 (476)
T KOG0646|consen 215 T-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVN---------------------------QKGRH-EE 264 (476)
T ss_pred e-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccc---------------------------ccccc-cc
Confidence 3 567889999998 778999999999999998876432111000 00000 12
Q ss_pred CceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEe
Q 010784 335 MQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG 409 (501)
Q Consensus 335 ~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g 409 (501)
+..+..+.+|.+ .|+|++++-||.+|++|+.|+ +.|||+.+.+++ +++..-.++|+.+.+.|- ..+..-
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i------Rtl~~~kgpVtnL~i~~~~~~~~l~~ 338 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI------RTLQTSKGPVTNLQINPLERGIILFE 338 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH------HHHhhhccccceeEeeccccceeccc
Confidence 345567778877 999999999999999999999 999999997665 777656789999999776 222222
Q ss_pred cCCCcEEEEeC
Q 010784 410 RDDLRINIWET 420 (501)
Q Consensus 410 s~dg~i~iwd~ 420 (501)
...-.+-.|++
T Consensus 339 ~~~ps~~~~~l 349 (476)
T KOG0646|consen 339 HKQPSLPNPHL 349 (476)
T ss_pred ccCccCCchHh
Confidence 23344455544
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=190.27 Aligned_cols=297 Identities=14% Similarity=0.157 Sum_probs=219.8
Q ss_pred eEEEecCCCCceEEeeCCc--EEEeecCCeeeEEEEecc---cccccceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784 104 VCFYSVAKPHDHILLDNND--IFSTQGSSIQNIKIDNFL---SESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~--~~~~~g~~d~~i~vw~~~---~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
.........|++++|+|.. .++|+|+.-|.|-+||+. ....-+..+..|.++|.+|.|+|. +.
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~------------n~ 247 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA------------NT 247 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC------------Ch
Confidence 3455577789999999865 689999999999999994 223456677899999999999996 67
Q ss_pred cEEEEeeCCCceEEec-CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 179 NVLVTSSCDHSIRLWW-KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd-~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
..+++.|+||+|++-| .+. .+..+..-...+..+.|+ .+...++.|..=|...+||+++++. ....+
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~----~e~~~vl~~~~~G~f~~iD~R~~~s-----~~~~~ 318 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS----AESRSVLFGDNVGNFNVIDLRTDGS-----EYENL 318 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc----CCCccEEEeecccceEEEEeecCCc-----cchhh
Confidence 8999999999999998 322 223333345566778886 5556666677777999999999875 46667
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
.-|...|..++++|....+|+|+|.|++.+|||++......+
T Consensus 319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-------------------------------------- 360 (498)
T KOG4328|consen 319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-------------------------------------- 360 (498)
T ss_pred hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--------------------------------------
Confidence 788899999999999899999999999999999987543211
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc---CcccC--eEEEEecCC-eEEE
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD---GHVGS--VTQLHMDPY-KIVT 407 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~---~h~~~--v~~l~~~~~-~~l~ 407 (501)
+......|...|.+..|||.+-.|++.+.|. |+|||..-.... ..+..++. .+..+ .....|.|+ .+++
T Consensus 361 --p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~--~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 361 --PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK--DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV 436 (498)
T ss_pred --cceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc--CCccceeeccCcccccccchhheeCCCccEEE
Confidence 1122335899999999999866688888777 999998511111 12222222 11122 344579999 9999
Q ss_pred EecCCCcEEEEeCCCcccccccccCCCCCCCcceee-eEeeccccEEEEeecCCCceEEEee
Q 010784 408 GGRDDLRINIWETDTGMLANSLLCNYPEEADISTGC-SAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 408 ~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.|-.-..|-|+|-..++.+..+.. .....|.+ ..|+|-+..+++|+. ..|.|+||-
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~----P~~~tI~~vn~~HP~~~~~~aG~~-s~Gki~vft 493 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHD----PESSTIPSVNEFHPMRDTLAAGGN-SSGKIYVFT 493 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccC----ccccccccceeecccccceeccCC-ccceEEEEe
Confidence 998999999999988887777632 11224443 589999987777764 568888775
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=9.1e-24 Score=193.67 Aligned_cols=336 Identities=13% Similarity=0.097 Sum_probs=253.4
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc------ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES------YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
+|..=|+++.|+|.+..|.+++.|+++.+|...+.. -.+-.+.|....-....|+| +++.+
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-------------n~~~i 331 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-------------NSNVI 331 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-------------CCCEE
Confidence 344449999999999999999999999999877530 01112223445577777777 88999
Q ss_pred EEeeCCCceEEec-CC----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 182 VTSSCDHSIRLWW-KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 182 ~s~~~dg~i~vwd-~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
++-+..|..++|. .. .....+.+|.+.|.++.|. |.|++|++.+.|.+-|+|-.-..+. .+..+...+-
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~----psGeflLsvs~DQTTRlFa~wg~q~--~wHEiaRPQi 405 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD----PSGEFLLSVSLDQTTRLFARWGRQQ--EWHEIARPQI 405 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeec----CCCCEEEEeccccceeeeccccccc--ceeeeccccc
Confidence 9999999999997 22 3345567999999999996 8999999999999999987663222 2444555667
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC--------------------------------ccccc--------
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS--------------------------------SAVRS-------- 296 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~--------------------------------~~~~~-------- 296 (501)
|...++|+++.+ ....|++|.....+|+|+.... +....
T Consensus 406 HGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 406 HGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred ccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 889999999996 4778999999999999976410 00000
Q ss_pred ----eecc---------------------------cceecCCCceeeecCCCeEEEEeCC--------cEEEEEcCCCce
Q 010784 297 ----SCCV---------------------------GMTSVPGVPVDMKCHESMLYIASGS--------SVVTIDLRTMQK 337 (501)
Q Consensus 297 ----~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~d~~~~~~ 337 (501)
.+.. ....+...++++..++++.++++.. .|.+|+..+...
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 0000 0002233456677777777777653 599999999999
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcE
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRI 415 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i 415 (501)
+..+.+|.-.|+.++|||||++|++.+.|+ +.+|........ .......+.|..-|.+..|+|+ .+++++|.|.+|
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~--e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V 642 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD--EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV 642 (764)
T ss_pred hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch--hhhhccccccceEEEEcccCcccceeEEecCCceE
Confidence 999999999999999999999999999999 999998654332 1223447789999999999999 889999999999
Q ss_pred EEEeCCCc--ccccccccCCCCCCCcceeeeEeecc-----ccEEEEeecCCCceEEEeecc
Q 010784 416 NIWETDTG--MLANSLLCNYPEEADISTGCSAMAVS-----GCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 416 ~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~s~~~d~~g~i~~w~~~ 470 (501)
++|..... +.+..+. ...++..|+.+++.|- +..+++|- +.|.|.+|.+.
T Consensus 643 kVW~~~~~~d~~i~~~a---~~~~~~aVTAv~~~~~~~~e~~~~vavGl--e~GeI~l~~~~ 699 (764)
T KOG1063|consen 643 KVWEEPDLRDKYISRFA---CLKFSLAVTAVAYLPVDHNEKGDVVAVGL--EKGEIVLWRRK 699 (764)
T ss_pred EEEeccCchhhhhhhhc---hhccCCceeeEEeeccccccccceEEEEe--cccEEEEEecc
Confidence 99999887 4444431 1456788999998872 22556665 88999999955
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.3e-24 Score=200.45 Aligned_cols=281 Identities=20% Similarity=0.252 Sum_probs=215.4
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
+.|..+-+.|+++++|.++.+++.|+.|++|+.......-.++..|...|.+++.. +++|++|+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---------------s~~f~~~s~ 74 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---------------SNHFLTGSE 74 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---------------ccceEEeec
Confidence 45666789999999999999999999999999776424444555588889999874 579999999
Q ss_pred CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
+++|.+|. .+..-..+...+-++++++|+ .+|++++.|+.|-.|++-++..... ...+++|.++|.++
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~----g~g~~iaagsdD~~vK~~~~~D~s~------~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVS----GSGKMIAAGSDDTAVKLLNLDDSSQ------EKVLRGHDAPVLQL 144 (933)
T ss_pred cceEEEeeCCCCCccceeeeeeccceEEEEe----cCCcEEEeecCceeEEEEeccccch------heeecccCCceeee
Confidence 99999997 444433444556789999996 8999999999999999999998774 78899999999999
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc-
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI- 343 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~- 343 (501)
.++| .+++|++.+-||.|++||+.++........+.. ....
T Consensus 145 ~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-------------------------------------~n~~~ 186 (933)
T KOG1274|consen 145 SYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-------------------------------------DNEFI 186 (933)
T ss_pred eEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCc-------------------------------------ccccc
Confidence 9998 788999999999999999998754332211100 0000
Q ss_pred CCCcEEEEEEcCCCcEEE-EEcCCcEEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEEEEecCCCcEEEEe
Q 010784 344 CKPILHSFSIMPSKSLIC-TGGIGKAMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIVTGGRDDLRINIWE 419 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~-~~~~d~i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd 419 (501)
....+..++|+|++..++ .+.++.|++|+....+.. ..+. .+...+..++|+|. ++||+++.||.|.|||
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~------f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ------FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh------eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 134567899999955554 444555999999987654 3333 34445999999999 9999999999999999
Q ss_pred CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
+++-.. +. ....|.+++|.|++.-|-.-. ..|...+|
T Consensus 261 v~t~~~-~~--------~~~~Vc~~aw~p~~n~it~~~--~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTHER-HE--------FKRAVCCEAWKPNANAITLIT--ALGTLGVS 297 (933)
T ss_pred cccchh-cc--------ccceeEEEecCCCCCeeEEEe--eccccccC
Confidence 998222 22 256899999999987665544 33444444
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.5e-24 Score=177.36 Aligned_cols=260 Identities=17% Similarity=0.208 Sum_probs=196.4
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccc---cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE---SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
|..-|+++.|+..|+.+|+++.|++++|||..++ ..+....+.|.+.|..+.|.+.. -|+.+|+++
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE-----------fGqvvA~cS 80 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE-----------FGQVVATCS 80 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc-----------ccceEEEEe
Confidence 3344999999999999999999999999996532 34566678999999999997622 589999999
Q ss_pred CCCceEEecCC-----------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 186 CDHSIRLWWKG-----------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 186 ~dg~i~vwd~~-----------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
.|+++.||... ....++......|+.+.|.| ..-|-.|++++.||.+|||+.-.......+.+...+
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP--~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP--KHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecc--hhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999999621 12345667788999999975 346789999999999999988665433333333333
Q ss_pred c-------CCCCceeEEEEeec--CCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEE
Q 010784 255 Y-------GHEKPIKLMSVAGH--KSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLY 320 (501)
Q Consensus 255 ~-------~~~~~v~~l~~~~~--~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (501)
. .+..+..|+.|++. ...+|+.|+.+ +.+.||......
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~---------------------------- 210 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG---------------------------- 210 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc----------------------------
Confidence 3 46667788999864 24577777765 367777654431
Q ss_pred EEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC----CcEEEEEcCCcEEEEecCCCCC------------C--CCC
Q 010784 321 IASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS----KSLICTGGIGKAMTWDIRRSQD------------A--VKP 382 (501)
Q Consensus 321 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~----~~~l~~~~~d~i~iwd~~~~~~------------~--~~~ 382 (501)
+....+.++.+|..+|+.++|.|+ ..+||+++.|+|+||.++.... . .+.
T Consensus 211 ------------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 211 ------------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ------------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccce
Confidence 122344566789999999999996 4689999999999999984211 0 112
Q ss_pred CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
+.+..+.+|.+.|..+.|+=. .+|++.+.||.|++|...
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 345667899999999999988 888888899999999764
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.4e-25 Score=190.12 Aligned_cols=239 Identities=18% Similarity=0.222 Sum_probs=190.7
Q ss_pred CcEEEeecCCeeeEEEEecccc--------------------cccceecccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSE--------------------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~--------------------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
.|+|+|.|..+..|.|||+.-- ++.-..-.+|++.|.++.|+.. -.+.
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~------------~~nV 258 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN------------FRNV 258 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc------------ccee
Confidence 4789999999999999997411 0111123479999999999874 4689
Q ss_pred EEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784 181 LVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
|||||.|.+|++|| ++++..++..|++.|.++.|+ +....+|++|+.|++|.+.|.+.... ....-...
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh---~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~ 329 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH---PYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFD 329 (463)
T ss_pred EEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec---CCCceEEEeccccceEEeeeccCccc------cCceEEec
Confidence 99999999999999 999999999999999999998 46778999999999999999996432 22223356
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
+.|-.++|.|.....++++..||+|+-+|+|.. ++++
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-------------------------------------------~~~v 366 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-------------------------------------------GKPV 366 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCC-------------------------------------------CCce
Confidence 788999999989999999999999999999975 2456
Q ss_pred eeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCc
Q 010784 339 MTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLR 414 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~ 414 (501)
.+++.|.++|.++++++. ..++++++.++ +++|++...... .+..-.-.-+...|.++.|+ .+++.|+..+.
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~----~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK----SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc----ccccccccccceeecccCCCcceEEEecCccce
Confidence 788899999999999986 66888999999 999999865432 11111111234677788888 77788888889
Q ss_pred EEEEeCCCccccc
Q 010784 415 INIWETDTGMLAN 427 (501)
Q Consensus 415 i~iwd~~~~~~~~ 427 (501)
++|||+.+...+.
T Consensus 443 ~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 443 LRVWDIFTNSPVR 455 (463)
T ss_pred EEEeecccChhHH
Confidence 9999998876554
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-23 Score=175.06 Aligned_cols=261 Identities=14% Similarity=0.114 Sum_probs=196.9
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
..|+.|.|++....|+.++-||.+++|+.... .++..-.|..++.+++|.+ ...+++|+.||.|
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d--------------~~~~~~G~~dg~v 77 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFAD--------------ESTIVTGGLDGQV 77 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccC--------------CceEEEeccCceE
Confidence 34999999999999999999999999999863 3444447899999999985 5789999999999
Q ss_pred EEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 191 RLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 191 ~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
+++| .......+..|..+|.|+.++ +....+++|+.|++|++||.+... ....+. ....|.++...
T Consensus 78 r~~Dln~~~~~~igth~~~i~ci~~~----~~~~~vIsgsWD~~ik~wD~R~~~------~~~~~d-~~kkVy~~~v~-- 144 (323)
T KOG1036|consen 78 RRYDLNTGNEDQIGTHDEGIRCIEYS----YEVGCVISGSWDKTIKFWDPRNKV------VVGTFD-QGKKVYCMDVS-- 144 (323)
T ss_pred EEEEecCCcceeeccCCCceEEEEee----ccCCeEEEcccCccEEEEeccccc------cccccc-cCceEEEEecc--
Confidence 9999 555556667799999999997 677899999999999999998643 233333 34478888774
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC--CeEEEEe-CCcEEEEEcCCC----ceEeeec
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIAS-GSSVVTIDLRTM----QKVMTPA 342 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~i~~~d~~~~----~~~~~~~ 342 (501)
++.|+.|+.|..|.+||+++.....+. ..........++.+.| .+.++.+ .+.+.+=.+... +....|+
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 568899999999999999987643311 1112233334444444 4444443 455555444333 3345555
Q ss_pred cCC---------CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784 343 ICK---------PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR 410 (501)
Q Consensus 343 ~~~---------~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs 410 (501)
.|. .+|++++|+|-...|++|+.|+ |.+||+.+.+.+ ..+......|.+++|+.+ ..||.++
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl------~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL------KQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh------hhccCCCCceEEEEeccCCCeEEEEe
Confidence 552 3689999999999999999999 999999997655 777776778999999999 7777764
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=5.4e-24 Score=193.41 Aligned_cols=294 Identities=18% Similarity=0.197 Sum_probs=209.9
Q ss_pred CCcEEEeecCCeeeEEEEecccc-----cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784 120 NNDIFSTQGSSIQNIKIDNFLSE-----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194 (501)
Q Consensus 120 ~~~~~~~~g~~d~~i~vw~~~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd 194 (501)
....+|+.+..+|.|.++|.... .+.++.+..|...|..+.|.| ....|++++.|.++++||
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-------------ge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-------------GESLLVSASGDSTIRPWD 128 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-------------CceeEEEccCCceeeeee
Confidence 45677889999999999997652 122456678999999999999 578999999999999999
Q ss_pred --CCceeee--ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc---------------c---cc---cc
Q 010784 195 --KGSCQRC--FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK---------------R---GQ---QA 249 (501)
Q Consensus 195 --~~~~~~~--~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~---------------~---~~---~~ 249 (501)
..+++.. +.+|++.|.+++|++ .+...|++|+.||.|.|||++-... . .. .+
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~---~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMP---TNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eccceeecceeecccccccchhhhcc---CCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 5555555 889999999999984 5667999999999999999975431 0 00 00
Q ss_pred ceeeccCCCCce----eEEEEeecCCeEEEEEeC-CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 250 LKATLYGHEKPI----KLMSVAGHKSFLLVTISK-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 250 ~~~~~~~~~~~v----~~l~~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
-+..-+.+...| +.+.|- |...|++++. |+.|+|||++.............
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~---------------------- 261 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS---------------------- 261 (720)
T ss_pred cccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcc----------------------
Confidence 111222344334 444443 7778888887 99999999998754332211111
Q ss_pred CcEEEEEcCCCceEeeeccC---CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeE--EE
Q 010784 325 SSVVTIDLRTMQKVMTPAIC---KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT--QL 398 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l 398 (501)
..+..| ...+.++.....|.++.+.+.|+ |++|++..... .++..+.++...-. .-
T Consensus 262 --------------~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 262 --------------DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKS 323 (720)
T ss_pred --------------cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeee
Confidence 111112 33467777777777777666666 99999998653 35566665533211 22
Q ss_pred EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccc-cEEEEeecCCCceEEEeeccCCccce
Q 010784 399 HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSG-CRIVTASYGEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 399 ~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~g~i~~w~~~~~~~~~ 476 (501)
..+|+ .++++|+.|...++|.+.+.+.-..+. .+|...|++++|.|.. .-+++++ +|..+++|++.++....
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~Ght~eVt~V~w~pS~~t~v~TcS--dD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LGHTREVTTVRWLPSATTPVATCS--DDFRVKIWRLSNGLEEI 397 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCccCChhhh----hCcceEEEEEeeccccCCCceeec--cCcceEEEeccCchhhc
Confidence 46888 999999999999999999876554443 6788999999998854 4566666 78999999997766544
Q ss_pred e
Q 010784 477 L 477 (501)
Q Consensus 477 ~ 477 (501)
.
T Consensus 398 ~ 398 (720)
T KOG0321|consen 398 Y 398 (720)
T ss_pred c
Confidence 3
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=174.51 Aligned_cols=291 Identities=16% Similarity=0.117 Sum_probs=213.4
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
.+|+.|++.|.++|.|..+|.+.|||+.+ ..+.+.+.+|..+|++++||+ +|+.|+|+|.|..|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~-------------dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSR-------------DGRKLLTSSRDWSIKL 91 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecC-------------CCCEeeeecCCceeEE
Confidence 78999999999999999999999999999 589999999999999999999 8999999999999999
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCC-ceeEEEEee
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEK-PIKLMSVAG 268 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~-~v~~l~~~~ 268 (501)
|| .|.+++.++ ..++|....|+| .+.+.+++.-.+..-.+-++..+.. .++..- .+... .-.+..|.+
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp---~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHP---RKRNKCVATIMEESPVVIDFSDPKH----SVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeecc---ccCCeEEEEEecCCcEEEEecCCce----eeccCCCccccccccccccccC
Confidence 99 788888776 578999999984 4455555555555556666654321 011100 01111 111224554
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-CCc
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-KPI 347 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~ 347 (501)
.++++++|...|.+.++|..+.+.+... +.. ...
T Consensus 164 -~g~yIitGtsKGkllv~~a~t~e~vas~--------------------------------------------rits~~~ 198 (405)
T KOG1273|consen 164 -RGKYIITGTSKGKLLVYDAETLECVASF--------------------------------------------RITSVQA 198 (405)
T ss_pred -CCCEEEEecCcceEEEEecchheeeeee--------------------------------------------eechhee
Confidence 7889999999999999999887543322 211 256
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC---CCCCCcccccC--cccCeEEEEecCC-eEEEE-ecCCCcEEEEe
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA---VKPQPMAELDG--HVGSVTQLHMDPY-KIVTG-GRDDLRINIWE 419 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~---~~~~~~~~~~~--h~~~v~~l~~~~~-~~l~~-gs~dg~i~iwd 419 (501)
|.++.++..|++|+.-+.|+ ||.|+++.-... ...++.+.++. ....=.+++|+.+ .++++ .+....++||.
T Consensus 199 IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 199 IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 78899999999999999999 999998742111 01233333332 1223456788888 55444 45667899999
Q ss_pred CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784 420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
...|.+++.+.+.. ......+.|+|-...|++- ..|.+++|......+..+
T Consensus 279 ~~~GsLVKILhG~k----gE~l~DV~whp~rp~i~si---~sg~v~iw~~~~~enwsa 329 (405)
T KOG1273|consen 279 KSIGSLVKILHGTK----GEELLDVNWHPVRPIIASI---ASGVVYIWAVVQVENWSA 329 (405)
T ss_pred cCCcceeeeecCCc----hhheeecccccceeeeeec---cCCceEEEEeecccchhh
Confidence 99999999994322 2457788999999888887 458999999877666544
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.5e-24 Score=193.14 Aligned_cols=300 Identities=15% Similarity=0.180 Sum_probs=224.9
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCc----
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT---- 177 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~---- 177 (501)
....|..|...|.||..++.|.++|+|+.||+++||.+.+| .+++++.- .+.|.||+|+|.+..++++++..-.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence 34567778888999999999999999999999999999997 66666543 3579999999987766666554211
Q ss_pred -------------CcEEEEe----eCCCceEEecC------CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---
Q 010784 178 -------------ENVLVTS----SCDHSIRLWWK------GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED--- 231 (501)
Q Consensus 178 -------------~~~l~s~----~~dg~i~vwd~------~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d--- 231 (501)
...|+++ ..++++..|.. ...+...-.|...|..+.|+ ..|.||++...+
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH----rkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH----RKGDYLATVMPDSGN 545 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee----cCCceEEEeccCCCc
Confidence 1122222 23556777851 11133344588999999998 899999987654
Q ss_pred CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
..|.|.++..... ...+....+.|.++.|+|... +|+.++. ..|++||+.....+.
T Consensus 546 ~~VliHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqelvK---------------- 601 (733)
T KOG0650|consen 546 KSVLIHQLSKRKS------QSPFRKSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQELVK---------------- 601 (733)
T ss_pred ceEEEEecccccc------cCchhhcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHHHHH----------------
Confidence 4788999987653 445555667889999998544 5555554 579999987654332
Q ss_pred eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC
Q 010784 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
.+......|.+++++|.|.-|+.|+.++ +..+|+.-.. ++.+++..
T Consensus 602 ----------------------------kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~ 648 (733)
T KOG0650|consen 602 ----------------------------KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRL 648 (733)
T ss_pred ----------------------------HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-----chhHHhhh
Confidence 2333456789999999999999999888 9999998764 45789999
Q ss_pred cccCeEEEEecCC-eEEEEecCCCcEEEEeCCC---------cccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784 391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT---------GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE 460 (501)
Q Consensus 391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 460 (501)
|...+++++|++. .++++|+.||++.|+.-.- --++..+.+|... ....|..+.|+|...+|++++ .
T Consensus 649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~-~~~gVLd~~wHP~qpWLfsAG--A 725 (733)
T KOG0650|consen 649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT-NDLGVLDTIWHPRQPWLFSAG--A 725 (733)
T ss_pred hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-cccceEeecccCCCceEEecC--C
Confidence 9999999999999 9999999999999985321 1234555444322 344588889999999999999 5
Q ss_pred CceEEEe
Q 010784 461 PGLLQFR 467 (501)
Q Consensus 461 ~g~i~~w 467 (501)
||+|++|
T Consensus 726 d~tirlf 732 (733)
T KOG0650|consen 726 DGTIRLF 732 (733)
T ss_pred CceEEee
Confidence 6999998
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=2e-24 Score=178.28 Aligned_cols=218 Identities=18% Similarity=0.231 Sum_probs=172.9
Q ss_pred cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc------cccc---eeeccCCCCceeEEEEeecCCeE
Q 010784 203 KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG------QQAL---KATLYGHEKPIKLMSVAGHKSFL 273 (501)
Q Consensus 203 ~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~------~~~~---~~~~~~~~~~v~~l~~~~~~~~~ 273 (501)
..|.+.|+++..- ...|+++++|+.||.|.+||++...... +..+ .....+|.-.|..+.|-|.+..+
T Consensus 40 r~HgGsvNsL~id---~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 40 RPHGGSVNSLQID---LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ccCCCccceeeec---cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 4588999999876 4689999999999999999998654210 0111 12235688899999999999999
Q ss_pred EEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784 274 LVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI 353 (501)
Q Consensus 274 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~ 353 (501)
+.+++.|.+++|||..+.+... .|. .++.|++-++
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~--------------------------------------------~F~-me~~VYsham 151 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV--------------------------------------------DFK-MEGKVYSHAM 151 (397)
T ss_pred eecccccceEEEeecccceeeE--------------------------------------------Eee-cCceeehhhc
Confidence 9999999999999998875321 111 2566777777
Q ss_pred cCC---CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc-ccc
Q 010784 354 MPS---KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG-MLA 426 (501)
Q Consensus 354 ~~~---~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~-~~~ 426 (501)
+|- -.++|+|..|- |++-|+.++... +++.+|.+.|.++.|+|. .++++|+.||.|++||++.. .+.
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf 225 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFS------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF 225 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcce------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee
Confidence 773 45788888888 999999998776 999999999999999998 88999999999999999864 344
Q ss_pred cccccCC---------CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccce
Q 010784 427 NSLLCNY---------PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 427 ~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~ 476 (501)
.++..|. ...|.+.+++++|+.||.++++.+ -|..+++|+...+.+-+
T Consensus 226 ~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g--td~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 226 RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG--TDDRIRVWNMESGRNTL 282 (397)
T ss_pred EEeecccCccCccccccccccceeeeeeecccchhhhhcc--CccceEEeecccCcccc
Confidence 4443332 346788899999999999999999 45999999988766543
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.5e-24 Score=177.19 Aligned_cols=265 Identities=16% Similarity=0.148 Sum_probs=189.8
Q ss_pred eEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccccc----ccceecccCCcceeEEEeeccCcC------------
Q 010784 104 VCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES----YYRATLSDHKARITCMRLFPLHET------------ 167 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~----~~~~~~~~h~~~V~~~~~~~~~~~------------ 167 (501)
..+.+|...|++++|+.||+++|+.+.|++|++|+++.-. ++++. .-..+.-+.+.|.|+-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 5677899999999999999999999999999999986410 11111 001122344555554431
Q ss_pred ------------------------------cccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeee
Q 010784 168 ------------------------------SLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 168 ------------------------------~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~ 216 (501)
++......-++.+|++++.|..|.+|+ .|+.+..+......-+..+.|
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavS- 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVS- 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeC-
Confidence 111112223678999999999999999 888888887666666667776
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCC--ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSG--KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 294 (501)
|+|+++++++.--.|++|.+--.+ ...+...+..+++|...|..++|++ +...+++.|.||++++||+.-.-..
T Consensus 238 ---P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 238 ---PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred ---CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEec
Confidence 899999999999999999864322 1122334567899999999999997 7889999999999999998743221
Q ss_pred cc----eec--ccceecCCCceee--ecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEcCCCcEEEEEcC
Q 010784 295 RS----SCC--VGMTSVPGVPVDM--KCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKSLICTGGI 365 (501)
Q Consensus 295 ~~----~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~ 365 (501)
.+ ... .......+.+..+ ..+.+.+.++.++.++++..++++....+. .|...|.+++|+++|++++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 11 000 0111223344444 444555666677899999999988776554 58999999999999999999998
Q ss_pred CcEEEEecC
Q 010784 366 GKAMTWDIR 374 (501)
Q Consensus 366 d~i~iwd~~ 374 (501)
..++++.-.
T Consensus 394 r~vrv~~nt 402 (420)
T KOG2096|consen 394 RYVRVIRNT 402 (420)
T ss_pred eeeeeecCC
Confidence 878877633
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6e-23 Score=194.32 Aligned_cols=246 Identities=15% Similarity=0.175 Sum_probs=197.7
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC-ceeeeccCCCCceEEEEeeecCCCCCCEEE
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG-SCQRCFKGHNGPVSTLSDKLLGDGSGKILA 226 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~-~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~ 226 (501)
..|+..-+.|+|.| +|.+|++++.||.|++|+ .. ....++..+...|.+++. .+.+|+
T Consensus 10 yaht~G~t~i~~d~-------------~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~------~s~~f~ 70 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-------------DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC------YSNHFL 70 (933)
T ss_pred hhccCceEEEEEcC-------------CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee------cccceE
Confidence 47888999999999 889999999999999998 22 333444448888999884 566999
Q ss_pred EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC
Q 010784 227 SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP 306 (501)
Q Consensus 227 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 306 (501)
+|+.+++|.+|.+..+.. -..+...+-++++++++. ++++++.||.|-.|++.++.+..
T Consensus 71 ~~s~~~tv~~y~fps~~~------~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s-------------- 129 (933)
T KOG1274|consen 71 TGSEQNTVLRYKFPSGEE------DTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSS-------------- 129 (933)
T ss_pred EeeccceEEEeeCCCCCc------cceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccc--------------
Confidence 999999999999998874 334555677899999995 88999999999999999987763
Q ss_pred CCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc
Q 010784 307 GVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM 385 (501)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 385 (501)
....+++|.++|.++.|+|++++||+.+-|| |++||+.++.......-+
T Consensus 130 ------------------------------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 130 ------------------------------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred ------------------------------hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 2356788999999999999999999999888 999999987654111111
Q ss_pred ccccC-c-ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784 386 AELDG-H-VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP 461 (501)
Q Consensus 386 ~~~~~-h-~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 461 (501)
..-.. . ...+..++|+|+ .+++. +.|+.|++|+..+++....+.. ..+...+..+.|+|.|+|||+++ -+
T Consensus 180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we~~f~Lr~---~~~ss~~~~~~wsPnG~YiAAs~--~~ 253 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWELQFKLRD---KLSSSKFSDLQWSPNGKYIAAST--LD 253 (933)
T ss_pred CccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCceeheeecc---cccccceEEEEEcCCCcEEeeec--cC
Confidence 11111 1 345678899999 56655 5899999999999999988864 23344589999999999999999 56
Q ss_pred ceEEEeeccC
Q 010784 462 GLLQFRDFSN 471 (501)
Q Consensus 462 g~i~~w~~~~ 471 (501)
|.|.|||+.+
T Consensus 254 g~I~vWnv~t 263 (933)
T KOG1274|consen 254 GQILVWNVDT 263 (933)
T ss_pred CcEEEEeccc
Confidence 9999999984
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=9.9e-24 Score=179.97 Aligned_cols=248 Identities=22% Similarity=0.331 Sum_probs=187.3
Q ss_pred cCCCCceEEeeC--CcEEEeecCCeeeEEEEeccc---------------ccccceecccCCcceeEEEeeccCcCcccc
Q 010784 109 VAKPHDHILLDN--NDIFSTQGSSIQNIKIDNFLS---------------ESYYRATLSDHKARITCMRLFPLHETSLFR 171 (501)
Q Consensus 109 ~~~~i~~~~~~~--~~~~~~~g~~d~~i~vw~~~~---------------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~ 171 (501)
+.+.++.+..++ +..++|+=+..|.|+||++.. ..+++.++.+|.+.=+.++|||.
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~------- 222 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI------- 222 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc-------
Confidence 444577777775 456777888899999999742 25678889999999999999994
Q ss_pred cCCCCcCcEEEEeeCCCceEEec--CCce---eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc
Q 010784 172 SEPQRTENVLVTSSCDHSIRLWW--KGSC---QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG 246 (501)
Q Consensus 172 ~~~~~~~~~l~s~~~dg~i~vwd--~~~~---~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 246 (501)
....|+||..-+.|++|. ++.- ...|.+|+..|-.++||| .....|+||+.||+|+|||++.+.+
T Consensus 223 -----~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSp---tE~~vfaScS~DgsIrIWDiRs~~~-- 292 (440)
T KOG0302|consen 223 -----KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSP---TEDGVFASCSCDGSIRIWDIRSGPK-- 292 (440)
T ss_pred -----cccccccCccccceEeeeeccCceeecCccccccccchhhhccCC---ccCceEEeeecCceEEEEEecCCCc--
Confidence 345689999999999997 3322 245678999999999995 5667999999999999999998753
Q ss_pred cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784 247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326 (501)
Q Consensus 247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (501)
......+.|.+.|+.|.|+. ...+|++|+.||+++|||+++-+.
T Consensus 293 --~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~--------------------------------- 336 (440)
T KOG0302|consen 293 --KAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS--------------------------------- 336 (440)
T ss_pred --cceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC---------------------------------
Confidence 12233488999999999996 445999999999999999998642
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC-------------CCCCCcccccCc
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA-------------VKPQPMAELDGH 391 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~-------------~~~~~~~~~~~h 391 (501)
++++..++-|..+|+++.|+|. ...|++++.|. |.|||+...... ..++.+...++
T Consensus 337 --------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG- 407 (440)
T KOG0302|consen 337 --------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG- 407 (440)
T ss_pred --------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-
Confidence 3566788889999999999996 45666666666 999999754321 00111222222
Q ss_pred ccCeEEEEecCC--eEEEEecCCCcEEEEe
Q 010784 392 VGSVTQLHMDPY--KIVTGGRDDLRINIWE 419 (501)
Q Consensus 392 ~~~v~~l~~~~~--~~l~~gs~dg~i~iwd 419 (501)
+..+..+.|++. .++++.+.|| +.||-
T Consensus 408 Qke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 408 QKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 346788999988 6666666888 55554
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4e-25 Score=203.45 Aligned_cols=229 Identities=17% Similarity=0.318 Sum_probs=203.3
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
..|...+.|+.+-..++.+++|+.|..+.+|.+... ..+..|.+|..+|.++.|++ +..+|++|+.
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~-------------~E~Llaagsa 90 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDT-------------SERLLAAGSA 90 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCc-------------chhhhccccc
Confidence 345666888888888899999999999999998874 56667999999999999998 7899999999
Q ss_pred CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
+|+|++|| ..+.++++.+|...+.++.|+ |-+.++++|+.|+.+++||.+..+ +...+.+|...|..+
T Consensus 91 sgtiK~wDleeAk~vrtLtgh~~~~~sv~f~----P~~~~~a~gStdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 91 SGTIKVWDLEEAKIVRTLTGHLLNITSVDFH----PYGEFFASGSTDTDLKIWDIRKKG------CSHTYKSHTRVVDVL 160 (825)
T ss_pred CCceeeeehhhhhhhhhhhccccCcceeeec----cceEEeccccccccceehhhhccC------ceeeecCCcceeEEE
Confidence 99999999 788889999999999999997 789999999999999999999766 589999999999999
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 344 (501)
+|+| ++.+++.|+.|..+++||...++. ...|..|
T Consensus 161 ~lsP-~Gr~v~~g~ed~tvki~d~~agk~--------------------------------------------~~ef~~~ 195 (825)
T KOG0267|consen 161 RLSP-DGRWVASGGEDNTVKIWDLTAGKL--------------------------------------------SKEFKSH 195 (825)
T ss_pred eecC-CCceeeccCCcceeeeeccccccc--------------------------------------------ccccccc
Confidence 9998 899999999999999999987743 3466779
Q ss_pred CCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec
Q 010784 345 KPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR 410 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs 410 (501)
.+.+.++.|+|..-++++|+.|. +++||+++.+.+ .........|.+++|+|+ ..+.+|.
T Consensus 196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I------~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI------SSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred cccccccccCchhhhhccCCCCceeeeeccceeEEe------eccCCccCCceeeeecCCceeeecCc
Confidence 99999999999999999999999 999999986543 555566788999999999 8888863
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=179.53 Aligned_cols=213 Identities=20% Similarity=0.315 Sum_probs=174.4
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC------------------CceeeeccCCCCc
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK------------------GSCQRCFKGHNGP 208 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~------------------~~~~~~~~~h~~~ 208 (501)
.....|.+.++-+.-++.+ +..+.++=+..|.|+|||. .+.+.++.+|...
T Consensus 145 ~~~i~h~g~~NRvr~~~~~-----------~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E 213 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLG-----------NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE 213 (440)
T ss_pred ccccccccccceeeecccC-----------CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc
Confidence 3345788889888888753 5567788888999999972 1345677889999
Q ss_pred eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDT 288 (501)
Q Consensus 209 v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~ 288 (501)
=..++||| .....|++|..-+.|++|...++.-. .-...+.+|+..|..++|+|.....|++||-||+|+|||+
T Consensus 214 Gy~LdWSp---~~~g~LlsGDc~~~I~lw~~~~g~W~---vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 214 GYGLDWSP---IKTGRLLSGDCVKGIHLWEPSTGSWK---VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred ceeeeccc---ccccccccCccccceEeeeeccCcee---ecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 99999984 33446889999999999999886531 1124466799999999999988999999999999999999
Q ss_pred CCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-
Q 010784 289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK- 367 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~- 367 (501)
+.+... .....+.|.+.|+-|.|+....+|++|++++
T Consensus 288 Rs~~~~------------------------------------------~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt 325 (440)
T KOG0302|consen 288 RSGPKK------------------------------------------AAVSTKAHNSDVNVISWNRREPLLASGGDDGT 325 (440)
T ss_pred cCCCcc------------------------------------------ceeEeeccCCceeeEEccCCcceeeecCCCce
Confidence 987431 1122367899999999999888999999999
Q ss_pred EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC
Q 010784 368 AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 368 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~ 421 (501)
++|||+++.+. ..++.+++.|..+|++|.|+|. ..+++++.|..|.+||+.
T Consensus 326 ~~iwDLR~~~~---~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 326 LSIWDLRQFKS---GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEEEEhhhccC---CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 99999998765 4788999999999999999998 777777899999999985
No 143
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.3e-22 Score=183.10 Aligned_cols=266 Identities=13% Similarity=0.051 Sum_probs=188.5
Q ss_pred EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE-EEeeCCCceEEec--CCcee
Q 010784 123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL-VTSSCDHSIRLWW--KGSCQ 199 (501)
Q Consensus 123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~~~ 199 (501)
..+++++.|+.+++||..++ +....+.+|.. +.+++|+| ++..+ ++++.++.|++|| .++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~-------------dg~~l~~~~~~~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSK-------------DGKLLYVCASDSDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECC-------------CCCEEEEEECCCCeEEEEECCCCcEE
Confidence 56788999999999999885 67777776644 67899998 67765 6777899999999 55566
Q ss_pred eeccCCCCceEEEEeeecCCCCCCEEEE-eeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe
Q 010784 200 RCFKGHNGPVSTLSDKLLGDGSGKILAS-GGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS 278 (501)
Q Consensus 200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s 278 (501)
..+..+.. +..++|+ ++++.+++ ++.++.|++||+.+.. .+..+.. ...+.+++++| ++..+++++
T Consensus 67 ~~~~~~~~-~~~~~~~----~~g~~l~~~~~~~~~l~~~d~~~~~------~~~~~~~-~~~~~~~~~~~-dg~~l~~~~ 133 (300)
T TIGR03866 67 GTLPSGPD-PELFALH----PNGKILYIANEDDNLVTVIDIETRK------VLAEIPV-GVEPEGMAVSP-DGKIVVNTS 133 (300)
T ss_pred EeccCCCC-ccEEEEC----CCCCEEEEEcCCCCeEEEEECCCCe------EEeEeeC-CCCcceEEECC-CCCEEEEEe
Confidence 66655443 4677886 77776654 4568999999998764 2444432 33467899998 777888877
Q ss_pred CCC-eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784 279 KDS-KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK 357 (501)
Q Consensus 279 ~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~ 357 (501)
.++ .+.+||.++++... ... ....+..++|+|++
T Consensus 134 ~~~~~~~~~d~~~~~~~~--------------------------------------------~~~-~~~~~~~~~~s~dg 168 (300)
T TIGR03866 134 ETTNMAHFIDTKTYEIVD--------------------------------------------NVL-VDQRPRFAEFTADG 168 (300)
T ss_pred cCCCeEEEEeCCCCeEEE--------------------------------------------EEE-cCCCccEEEECCCC
Confidence 764 46677877653211 111 12234678999999
Q ss_pred cEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCc-------ccCeEEEEecCC-eE-EEEecCCCcEEEEeCCCcccc
Q 010784 358 SLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGH-------VGSVTQLHMDPY-KI-VTGGRDDLRINIWETDTGMLA 426 (501)
Q Consensus 358 ~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~-~~-l~~gs~dg~i~iwd~~~~~~~ 426 (501)
++++.++ .++ |++||+.+++.. ..+..+ ......++++|+ ++ +++.+.++.+.+||..+++.+
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVI------KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceee------eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 9886554 466 999999987643 222111 112356889998 44 454456778999999988877
Q ss_pred cccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 427 NSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
..+. +...+.+++|+|+|++|++++. .+|.|.+||+..+..
T Consensus 243 ~~~~------~~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 243 DYLL------VGQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEE------eCCCcceEEECCCCCEEEEEcC-CCCeEEEEECCCCcE
Confidence 6552 2346889999999999988753 579999999998764
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.3e-23 Score=183.13 Aligned_cols=258 Identities=15% Similarity=0.225 Sum_probs=203.3
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceeeeccC--CCCceEEEEeeecCCCCCC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQRCFKG--HNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~~~~~--h~~~v~~l~~s~~~~~~~~ 223 (501)
.|.+.|.++..+. ..+++.||+ .|-|+||| .+ ..+..+.. ....|.++..+ ++|+
T Consensus 417 ~HGEvVcAvtIS~-------------~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~----pdgr 478 (705)
T KOG0639|consen 417 AHGEVVCAVTISN-------------PTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL----PDGR 478 (705)
T ss_pred ccCcEEEEEEecC-------------CcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEec----CCCc
Confidence 6888899999987 678999988 57899999 22 22222322 34567777776 8999
Q ss_pred EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT 303 (501)
Q Consensus 224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 303 (501)
.|++|++-.++.|||+..... +....+....-....++.+| +.++.+++..||.|.|||+++..
T Consensus 479 tLivGGeastlsiWDLAapTp----rikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~----------- 542 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTP----RIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT----------- 542 (705)
T ss_pred eEEeccccceeeeeeccCCCc----chhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce-----------
Confidence 999999999999999987653 12222333334567888998 78899999999999999998763
Q ss_pred ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784 304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP 382 (501)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 382 (501)
.++.+++|.+.+.||.+++||..|.+|+-|+ ||.||++.+..+
T Consensus 543 ---------------------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql--- 586 (705)
T KOG0639|consen 543 ---------------------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL--- 586 (705)
T ss_pred ---------------------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---
Confidence 4567889999999999999999999999888 999999998654
Q ss_pred CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784 383 QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP 461 (501)
Q Consensus 383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 461 (501)
... .....|.++-.+|. ..++.|-.++.+.|-... +.....+ ..|.+-|.++.|.+.|+++++.+.|
T Consensus 587 ---qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyql-----hlheScVLSlKFa~cGkwfvStGkD-- 654 (705)
T KOG0639|consen 587 ---QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQL-----HLHESCVLSLKFAYCGKWFVSTGKD-- 654 (705)
T ss_pred ---hhh-hhhhhheecccCCCccceeeecccCcEEEEecC-Cccceee-----cccccEEEEEEecccCceeeecCch--
Confidence 222 23578999999999 899998889988888765 3334445 4578899999999999999999955
Q ss_pred ceEEEe--------------------eccCCccceeecCCCCceeeecc
Q 010784 462 GLLQFR--------------------DFSNATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 462 g~i~~w--------------------~~~~~~~~~~s~~~d~~~~~w~~ 490 (501)
..+..| |++.+.+++++|+.|....+|.+
T Consensus 655 nlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 655 NLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 555555 57778888999999988888765
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=167.87 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=210.1
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccc-----------cceecc-cCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESY-----------YRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-----------~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
...+.|+|||..+++-+.|..+++|++..... ...+++ -....|....|-+ .....+|+.++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs------~M~s~qP~t~l 125 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYS------RMKSDQPSTNL 125 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeee------ccccCCCccce
Confidence 55678999999999999999999999763200 000111 1234577777764 12234568899
Q ss_pred EEEeeCCCceEEec--CCceeeeccC--CCCc---eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-CCcccccccee
Q 010784 181 LVTSSCDHSIRLWW--KGSCQRCFKG--HNGP---VSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-SGKRGQQALKA 252 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~~~~~~~~~--h~~~---v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~ 252 (501)
+++.+.+.-|++|| +|+....+.+ |... -.+++|+ ++|..|++|. ...|++||+.. +..-.....+.
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs----~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS----PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec----CCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999 7777666653 4433 4588997 8999999875 57999999944 33211111111
Q ss_pred -eccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEE
Q 010784 253 -TLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTID 331 (501)
Q Consensus 253 -~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 331 (501)
...+..+-|.+++|+|.+...++.|+....+-||.-..+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---------------------------------------- 240 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---------------------------------------- 240 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----------------------------------------
Confidence 123446788999999988889999999888888876554
Q ss_pred cCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--CCcEEEEecCCCCCCCCCCCcccccCccc-CeEEEEe--cCC-eE
Q 010784 332 LRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--IGKAMTWDIRRSQDAVKPQPMAELDGHVG-SVTQLHM--DPY-KI 405 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~--~~~-~~ 405 (501)
.++..+-+|.+.|+.+.|.++|+.|.+|+ ++.|.+||++.... ++..+..|.+ .-..|.| .|. ++
T Consensus 241 ----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDld~~~~~ 311 (406)
T KOG2919|consen 241 ----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDLDPKGEI 311 (406)
T ss_pred ----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEecCCCCce
Confidence 33455668999999999999999999999 34499999998753 4678888866 4445555 566 99
Q ss_pred EEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 406 VTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
|++|+.||.|++||++. +.....+ ..+...++.++++|--.++++++.
T Consensus 312 LasG~tdG~V~vwdlk~~gn~~sv~-----~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 312 LASGDTDGSVRVWDLKDLGNEVSVT-----GNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred eeccCCCccEEEEecCCCCCccccc-----ccccccccceecCcccceeeeccC
Confidence 99999999999999988 6666666 566788999999999889998873
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.2e-23 Score=179.32 Aligned_cols=290 Identities=17% Similarity=0.208 Sum_probs=203.3
Q ss_pred ceEEeeCCcEEEeecCC---eeeEEEEecccccccceecccC----CcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 114 DHILLDNNDIFSTQGSS---IQNIKIDNFLSESYYRATLSDH----KARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~---d~~i~vw~~~~~~~~~~~~~~h----~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
.-+.+-|...+++++-. ...+.+|=.+. ..-..+..| ...-.|++|...+ ..-..-|+++|.|..
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~nlYvHHD~ilpafPLC~ewld~~------~~~~~~gNyvAiGtm 200 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEENLYVHHDFILPAFPLCIEWLDHG------SKSGGAGNYVAIGTM 200 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcC--CCcceeEecceeccCcchhhhhhhcC------CCCCCCcceEEEecc
Confidence 45566676666666644 23444443332 111122222 2233566765321 001125799999999
Q ss_pred CCceEEec---CCce--ee------------------eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784 187 DHSIRLWW---KGSC--QR------------------CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243 (501)
Q Consensus 187 dg~i~vwd---~~~~--~~------------------~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 243 (501)
|..|.||| .... .. .-.+|+..|.++.|. ....+.|+|||.|.+|++||+.+++
T Consensus 201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n---~~~~nVLaSgsaD~TV~lWD~~~g~ 277 (463)
T KOG0270|consen 201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN---RNFRNVLASGSADKTVKLWDVDTGK 277 (463)
T ss_pred CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc---cccceeEEecCCCceEEEEEcCCCC
Confidence 99999998 1110 00 112689899999886 3456799999999999999999988
Q ss_pred ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784 244 KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS 323 (501)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
+...+..|.+.|.++.|+|..+..|++|+.|++|.+.|.+......
T Consensus 278 ------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---------------------------- 323 (463)
T KOG0270|consen 278 ------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---------------------------- 323 (463)
T ss_pred ------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC----------------------------
Confidence 5888889999999999999999999999999999999999632100
Q ss_pred CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784 324 GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD 401 (501)
Q Consensus 324 ~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 401 (501)
..++ ..+.|..++|.|. ...++++.+|+ ++-+|+|+.. +++.+++.|.++|.+|+++
T Consensus 324 ---------------~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n 382 (463)
T KOG0270|consen 324 ---------------KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVN 382 (463)
T ss_pred ---------------ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-----CceeEEEeccCCcceEEec
Confidence 0011 2577889999986 45677777888 9999999974 4579999999999999999
Q ss_pred CC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccCCcc
Q 010784 402 PY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 402 ~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+. .++++++.|+.|++|++..-....... + .-.-+...|.++.|+-. +++.|+ ..+.+++||+.....
T Consensus 383 ~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~--~~~~~rl~c~~~~~~~a~~la~GG--~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 383 IQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-H--SFKLGRLHCFALDPDVAFTLAFGG--EKAVLRVWDIFTNSP 453 (463)
T ss_pred CCCCcceeeccccceEEEEeecCCCCccccc-c--cccccceeecccCCCcceEEEecC--ccceEEEeecccChh
Confidence 88 899999999999999997544322221 0 01123456677777765 455565 667899999876554
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=8e-23 Score=185.86 Aligned_cols=282 Identities=16% Similarity=0.190 Sum_probs=194.2
Q ss_pred cCcEEEEeeCCCceEEecCCce--------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784 177 TENVLVTSSCDHSIRLWWKGSC--------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
...+|+.+..||.|.++|+.+. +.....|...|..+.|. +....|++++.|.++++||+++.+.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa----pge~~lVsasGDsT~r~Wdvk~s~l---- 134 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA----PGESLLVSASGDSTIRPWDVKTSRL---- 134 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC----CCceeEEEccCCceeeeeeecccee----
Confidence 4578999999999999992211 24456899999999996 6778999999999999999998763
Q ss_pred cceee--ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc--eecCCCceeeecCCCeEEEEeC
Q 010784 249 ALKAT--LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM--TSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 249 ~~~~~--~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
... +.+|...|.+++|.+.+...|++|+.||.|.|||++....-........ ..+.+.+.-..
T Consensus 135 --~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk----------- 201 (720)
T KOG0321|consen 135 --VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK----------- 201 (720)
T ss_pred --ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc-----------
Confidence 444 7899999999999999999999999999999999986541100000000 00011000000
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEE---EEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccc--cCc---ccC
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHS---FSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAEL--DGH---VGS 394 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~---v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~--~~h---~~~ 394 (501)
...+.+.....+...|.+ +.+..|...|++++. |+ |++||++......+.++.... ..| .-.
T Consensus 202 --------p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 202 --------PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred --------hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 000122333345555555 556678888888885 77 999999997766544444433 333 346
Q ss_pred eEEEEecCC--eEEEEecCCCcEEEEeCCCcc--cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 395 VTQLHMDPY--KIVTGGRDDLRINIWETDTGM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 395 v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+.++..+.. +++|++ .|+.|++|++.+-. .+..+.++.. ..--..-..+||+.+|++|+. |...++|.++
T Consensus 274 ~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~---~sf~vks~lSpd~~~l~SgSs--d~~ayiw~vs 347 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLN---SSFYVKSELSPDDCSLLSGSS--DEQAYIWVVS 347 (720)
T ss_pred eEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCccc---ceeeeeeecCCCCceEeccCC--Ccceeeeeec
Confidence 777777775 777776 69999999997632 3333322110 111122367899999999994 5999999876
Q ss_pred CCc-----------------------cceeecCCCCceeeecccCC
Q 010784 471 NAT-----------------------CPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 471 ~~~-----------------------~~~~s~~~d~~~~~w~~~~~ 493 (501)
... ..+++.++|..+++|++..+
T Consensus 348 ~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 348 SPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 433 34677799999999999544
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=3.7e-22 Score=172.17 Aligned_cols=309 Identities=18% Similarity=0.247 Sum_probs=220.0
Q ss_pred cCCCCceEEeeCCcE-EEeecCCeeeEEEEecccc--------cccceecccCCcceeEEEeeccCcCcccccCCCCcCc
Q 010784 109 VAKPHDHILLDNNDI-FSTQGSSIQNIKIDNFLSE--------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTEN 179 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~-~~~~g~~d~~i~vw~~~~~--------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 179 (501)
...++..+.|.++.. .+|||+.|..|++|.+..+ -+....|..|...|+++.|+| +|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-------------~ge 78 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-------------DGE 78 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-------------CcC
Confidence 566789999998877 9999999999999987643 245567889999999999999 899
Q ss_pred EEEEeeCCCceEEecCC------------------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC
Q 010784 180 VLVTSSCDHSIRLWWKG------------------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241 (501)
Q Consensus 180 ~l~s~~~dg~i~vwd~~------------------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~ 241 (501)
+|+||+.+|.|.+|..+ ...+.+.+|...|..++|+ +++.++++|+.|..+++||+..
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws----~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS----PDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc----CCCceeeeeeccceEEEEEecc
Confidence 99999999999999521 1234567899999999997 8999999999999999999999
Q ss_pred CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEE
Q 010784 242 SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYI 321 (501)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (501)
+. +...+..|...|..++|.| -++++++-+.|...+.+.+...+.+......... .....+.
T Consensus 155 G~------l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~-------~~~~~~~---- 216 (434)
T KOG1009|consen 155 GQ------LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMP-------AKAFNER---- 216 (434)
T ss_pred ce------eEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEee-------ecccCCC----
Confidence 87 5888899999999999998 6779999999987777776654332211100000 0000000
Q ss_pred EeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC----Cc-E-----EEEecCCCCCCCCCCCcccccCc
Q 010784 322 ASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI----GK-A-----MTWDIRRSQDAVKPQPMAELDGH 391 (501)
Q Consensus 322 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~----d~-i-----~iwd~~~~~~~~~~~~~~~~~~h 391 (501)
.+...+++.=+++ ..-...++|+|+|.++++.+. ++ + ++++-... .+|...+...
T Consensus 217 -e~~s~rLfhDeTl---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l-----~rP~~~lp~~ 281 (434)
T KOG1009|consen 217 -EGKSTRLFHDETL---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL-----KRPAARLPSP 281 (434)
T ss_pred -CcceeeeeecCch---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc-----cCceeecCCC
Confidence 0001122211111 223456889999999987651 22 3 44443322 3445555555
Q ss_pred ccCeEEEEecC------------------C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784 392 VGSVTQLHMDP------------------Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 392 ~~~v~~l~~~~------------------~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 452 (501)
..++..+.++| . -+++.+ ....|.+||.++..++.... .-|-..++.++|++||..
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~----nihy~~iTDiaws~dg~~ 356 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVD----NIHYSAITDIAWSDDGSV 356 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEe----eeeeeeecceeecCCCcE
Confidence 55555555444 2 234444 55689999999988887774 456788999999999999
Q ss_pred EEEeecCCCceEEEeeccCCcc
Q 010784 453 IVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 453 l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
|+..|. ||...+-.|...+.
T Consensus 357 l~vSS~--DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 357 LLVSST--DGFCSLVTFEPWEL 376 (434)
T ss_pred EEEecc--CCceEEEEEcchhc
Confidence 999994 58877777665543
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.2e-21 Score=174.55 Aligned_cols=334 Identities=12% Similarity=0.117 Sum_probs=232.3
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccc------eecc-cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYR------ATLS-DHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~------~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
..+-++.|++++..++.|+.||.|++||..++.... ..+. +..--|+++.|.. ...|++
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--------------d~tI~s 220 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--------------DSTIAS 220 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--------------cCcEEE
Confidence 448899999999999999999999999999863322 1111 2344588888876 478999
Q ss_pred eeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 184 SSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 184 ~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
|...|+|++|| .+..++.+..|.+.|.|++.. ++++++++++.|+.|.-+...+... ++........|...|
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~----~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA----DNEDRVFSAGVDPKIIQYSLTTNKS--EWVINSRRDLHAHDV 294 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEc----CCCCeEEEccCCCceEEEEecCCcc--ceeeeccccCCcccc
Confidence 99999999999 889999999999999999985 7789999999999999999887654 233344556789999
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc-----
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ----- 336 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----- 336 (501)
.+++..+. .+++|+.|..+.+--.+..+..... .....+......++......++-..+.+.+|.+.+..
T Consensus 295 rs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~--~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 295 RSMAVIEN---ALISGGRDFTLAICSSREFKNMDHR--QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred eeeeeecc---eEEecceeeEEEEccccccCchhhh--ccccccccceeecCccceEEEEeccccccceeccCccccccc
Confidence 99999853 8999999999988766653322111 1111222333333333333444446678888776551
Q ss_pred ----eEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec
Q 010784 337 ----KVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR 410 (501)
Q Consensus 337 ----~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs 410 (501)
..+........|.+.+.+|+|++++.+.-...+||.+.....+ +...+.......-....+.|+-+ +++...-
T Consensus 370 ~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v-k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~ 448 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNV-KVINVDDVPLALLDASAISFTIDKNKLFLVSK 448 (691)
T ss_pred ChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcce-eEEEeccchhhhccceeeEEEecCceEEEEec
Confidence 1122223356789999999999999999777888888763321 01111222222334556666655 4444434
Q ss_pred CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 411 DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 411 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.+..+.+++.++......... .+......|..+..|++|++|++.+ ..|.|.+|++....
T Consensus 449 ~~~~le~~el~~ps~kel~~~-~~~~~~~~I~~l~~SsdG~yiaa~~--t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 449 NIFSLEEFELETPSFKELKSI-QSQAKCPSISRLVVSSDGNYIAAIS--TRGQIFVYNLETLE 508 (691)
T ss_pred ccceeEEEEecCcchhhhhcc-ccccCCCcceeEEEcCCCCEEEEEe--ccceEEEEEcccce
Confidence 778888888876543322211 1123466789999999999999999 55999999977554
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.8e-23 Score=199.79 Aligned_cols=288 Identities=17% Similarity=0.220 Sum_probs=209.7
Q ss_pred ceEEeeCCcE-EEeecCC----------eeeEEEEeccc--cc---ccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 114 DHILLDNNDI-FSTQGSS----------IQNIKIDNFLS--ES---YYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 114 ~~~~~~~~~~-~~~~g~~----------d~~i~vw~~~~--~~---~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
..++|+|.+. ++|+|.. +.++.+|.+.- +. +.+..+ .-..+-+.++|.+.+.. .
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~---------~ 79 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSH---------S 79 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCC---------c
Confidence 4467777765 5555543 44555554432 11 122222 22456889999884311 1
Q ss_pred CcEEEEeeCCCceEEecCC--------ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784 178 ENVLVTSSCDHSIRLWWKG--------SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA 249 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd~~--------~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 249 (501)
..+|+.|..||.|.+||.. ..+.++..|++.|..+.|.+ ..+++|++|+.||.|.|||++..+.
T Consensus 80 ~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~---~q~nlLASGa~~geI~iWDlnn~~t----- 151 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP---FQGNLLASGADDGEILIWDLNKPET----- 151 (1049)
T ss_pred cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccc---cCCceeeccCCCCcEEEeccCCcCC-----
Confidence 1369999999999999821 23556778999999999972 4456999999999999999998654
Q ss_pred ceee-ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEE
Q 010784 250 LKAT-LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVV 328 (501)
Q Consensus 250 ~~~~-~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (501)
.... -....+.|.+++|+.....+|++++.+|.+.|||++..+.+-...
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls------------------------------ 201 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS------------------------------ 201 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc------------------------------
Confidence 1111 223567899999997778899999999999999999875432211
Q ss_pred EEEcCCCceEeeeccCCCcEEEEEEcCCC-cEEEEEc-CCc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC
Q 010784 329 TIDLRTMQKVMTPAICKPILHSFSIMPSK-SLICTGG-IGK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY 403 (501)
Q Consensus 329 ~~d~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~-~d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 403 (501)
.......+..++|+|+. ..+++++ +|+ |.+||+|... .+++++++|...|.++.|++.
T Consensus 202 ------------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 202 ------------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred ------------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----CchhhhcccccceeeeccCCC
Confidence 00112447789999984 4455444 444 9999999864 457888999999999999987
Q ss_pred --eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecCCCceEEEeeccCCc
Q 010784 404 --KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 404 --~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+++++++.|++|.+|+.++++.+..+. ....++..+.|+|... .+++++ -+|.|.|+.+....
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgEvl~~~p-----~~~nW~fdv~w~pr~P~~~A~as--fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGEVLGELP-----AQGNWCFDVQWCPRNPSVMAAAS--FDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCceEeeecC-----CCCcceeeeeecCCCcchhhhhe--eccceeeeeeecCC
Confidence 888888899999999999999999994 3578899999999887 666666 56999999987655
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=9.5e-22 Score=165.07 Aligned_cols=322 Identities=13% Similarity=0.197 Sum_probs=216.8
Q ss_pred ecCCCCceEEee-----CCcEEEeecCCeeeEEEEecccc--cccceec--ccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784 108 SVAKPHDHILLD-----NNDIFSTQGSSIQNIKIDNFLSE--SYYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 108 ~~~~~i~~~~~~-----~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
.+..+|..++|+ ..-..+|+.+. ..+.+|..... .+.+... ..|.+.-..++|+-+..+ ..
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~---------~~ 105 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT---------GN 105 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC---------CC
Confidence 345678888887 23344554443 34555654432 1333333 247778888898764211 24
Q ss_pred cEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee---
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT--- 253 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--- 253 (501)
.++|.|+.-|.|+|.| .+++...+.+|...|+.+.|+| .+.+++++||.|.+||+|++.+.. ++..
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p---~~~qlvls~SkD~svRlwnI~~~~------Cv~VfGG 176 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHP---DRPQLVLSASKDHSVRLWNIQTDV------CVAVFGG 176 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCC---CCCcEEEEecCCceEEEEeccCCe------EEEEecc
Confidence 6899999999999999 8888999999999999999984 556899999999999999999976 3544
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
+.+|...|.++.|+. ++.++++++.|.++++|++...+.....+............- +.. -...+.+.
T Consensus 177 ~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p--fpt--------~~~~fp~f- 244 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP--FPT--------PKTHFPDF- 244 (385)
T ss_pred cccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc--CCc--------cccccccc-
Confidence 467999999999997 778999999999999999986644333222211111100000 000 00111111
Q ss_pred CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCC---CC----CCCcccccCcccCeEEEEe--cC
Q 010784 334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDA---VK----PQPMAELDGHVGSVTQLHM--DP 402 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~---~~----~~~~~~~~~h~~~v~~l~~--~~ 402 (501)
.+-..|...|-|+.|- |+++++-+-++ |..|..- -.+.. .. ...+.++......|.-+.| +|
T Consensus 245 -----st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 245 -----STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred -----cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence 1234578888888884 67888888777 9999872 22210 00 1122333333445666654 55
Q ss_pred C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 403 Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 403 ~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
. +++|.|...|.|.+||+++.++...-.... ......|...+|+.||..|+... +++.|.-||.-
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~-s~~~~tVRQ~sfS~dgs~lv~vc--dd~~Vwrwdrv 383 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH-SKSGSTVRQTSFSRDGSILVLVC--DDGTVWRWDRV 383 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCccCceEEe-ccccceeeeeeecccCcEEEEEe--CCCcEEEEEee
Confidence 5 999999999999999999876632111111 23467789999999999999998 77999999853
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.1e-21 Score=178.30 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=119.6
Q ss_pred eCCcEEEEEcCCCceEe--eec--cCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCC-CCCCCcccccCcccCe
Q 010784 323 SGSSVVTIDLRTMQKVM--TPA--ICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDA-VKPQPMAELDGHVGSV 395 (501)
Q Consensus 323 ~~~~i~~~d~~~~~~~~--~~~--~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~-~~~~~~~~~~~h~~~v 395 (501)
.++.|.+|+++....+- .+. .....|+.+.|.| |.+.|+++++|+ |++|.+..+... ....+-..+..|...|
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceE
Confidence 35699999997654321 111 1356799999999 578899999999 999999875432 2245557788999999
Q ss_pred EEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 396 TQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 396 ~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+++.|+|- .++++++.|-+|++||+.+++....+ .+|...|.+++|||||+.+++.+ .||+|++|+-....
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----~gHtdqIf~~AWSpdGr~~AtVc--KDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----VGHTDQIFGIAWSPDGRRIATVC--KDGTLRVYEPRSRE 753 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----ccCcCceeEEEECCCCcceeeee--cCceEEEeCCCCCC
Confidence 99999998 89999999999999999999999999 68899999999999999999999 66999999966554
Q ss_pred cc
Q 010784 474 CP 475 (501)
Q Consensus 474 ~~ 475 (501)
.+
T Consensus 754 ~p 755 (1012)
T KOG1445|consen 754 QP 755 (1012)
T ss_pred Cc
Confidence 44
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=170.58 Aligned_cols=261 Identities=18% Similarity=0.198 Sum_probs=189.6
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC------ceeeeccCCCCceEEEEeeec
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG------SCQRCFKGHNGPVSTLSDKLL 217 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~h~~~v~~l~~s~~ 217 (501)
......+-|.++|++++|+|.. +.+++++|..-|+|-+||.+ ..+..+..|.++|.+|.|+|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~-----------~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P- 244 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTE-----------NRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSP- 244 (498)
T ss_pred eecceeEecccceEEEEecccC-----------cceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecC-
Confidence 3445566789999999999952 34799999999999999932 23456778999999999985
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
.+...+++.+.||+|++-|+++... ..+.........+..+.|+. +...++.+..=|...+||+++....
T Consensus 245 --~n~s~i~ssSyDGtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~--- 314 (498)
T KOG4328|consen 245 --ANTSQIYSSSYDGTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSE--- 314 (498)
T ss_pred --CChhheeeeccCceeeeeeecchhh----HHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCcc---
Confidence 5667899999999999999998642 12333333455667777876 4445555666568999999987431
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~ 375 (501)
...+..|...|.+++++|. ..+|++++.|. .+|||++.
T Consensus 315 ----------------------------------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 315 ----------------------------------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred ----------------------------------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence 1234457889999999996 67899999888 99999998
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCC----CcccccccccCCCCCCCcc--eeeeEee
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETD----TGMLANSLLCNYPEEADIS--TGCSAMA 447 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~--v~~~~~s 447 (501)
-... ..++.....|...|.+..|+|. .++.+ +.|..|+|||.. ...++.++. |. ..+..+ .....|.
T Consensus 355 l~~K--~sp~lst~~HrrsV~sAyFSPs~gtl~TT-~~D~~IRv~dss~~sa~~~p~~~I~-Hn-~~t~RwlT~fKA~W~ 429 (498)
T KOG4328|consen 355 LRGK--ASPFLSTLPHRRSVNSAYFSPSGGTLLTT-CQDNEIRVFDSSCISAKDEPLGTIP-HN-NRTGRWLTPFKAAWD 429 (498)
T ss_pred hcCC--CCcceecccccceeeeeEEcCCCCceEee-ccCCceEEeecccccccCCccceee-cc-CcccccccchhheeC
Confidence 6543 2234555579999999999999 65555 699999999984 333444442 21 112222 2346899
Q ss_pred ccccEEEEeecCCCceEEEeeccCCc
Q 010784 448 VSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 448 ~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
|+..+|++|-+ ...|-|+|-+.++
T Consensus 430 P~~~li~vg~~--~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 430 PDYNLIVVGRY--PRPIDVFDGNGGQ 453 (498)
T ss_pred CCccEEEEecc--CcceeEEcCCCCE
Confidence 99999999985 3678888854433
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=170.33 Aligned_cols=267 Identities=13% Similarity=0.183 Sum_probs=202.6
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v 285 (501)
.+.|+++.|+ |....+++|+.||++++|.++.... +.++.+.-...+|.+..|.|.+...+++++....++.
T Consensus 213 ~~~I~sv~FH----p~~plllvaG~d~~lrifqvDGk~N----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 213 HGGITSVQFH----PTAPLLLVAGLDGTLRIFQVDGKVN----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred cCCceEEEec----CCCceEEEecCCCcEEEEEecCccC----hhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 5689999998 7889999999999999999987543 2566666677899999999955559999999999999
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
||+.+.+..............-..+.++...+.+.++. .+.|.+.-..+++.+.+++. .+.|..++|+.+++.|++.+
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEc
Confidence 99998865433222222211222233333333332222 24899999999999988885 78899999999998888887
Q ss_pred CCc-EEEEecCCCCCCCCCCCcccccCcccC--eEEEEecCC-eEEEEecCCCcEEEEeCCC------cccccccccCCC
Q 010784 365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGS--VTQLHMDPY-KIVTGGRDDLRINIWETDT------GMLANSLLCNYP 434 (501)
Q Consensus 365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~-~~l~~gs~dg~i~iwd~~~------~~~~~~~~~~~~ 434 (501)
.++ |.+||++...++ +.+.. .+. -++++.+++ .++|+||..|.|.|||..+ .+++.++
T Consensus 364 ~~GeV~v~nl~~~~~~------~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~----- 431 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCL------HRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV----- 431 (514)
T ss_pred CCceEEEEecCCcceE------EEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-----
Confidence 777 999999997554 66554 333 356777888 9999999999999999653 4566666
Q ss_pred CCCCcceeeeEeeccccEEEEeecCCCc------------------------eEEEeeccCCccceeecCCCCceeeecc
Q 010784 435 EEADISTGCSAMAVSGCRIVTASYGEPG------------------------LLQFRDFSNATCPVLKHEVQNDSKFWGP 490 (501)
Q Consensus 435 ~~~~~~v~~~~~s~~g~~l~s~~~d~~g------------------------~i~~w~~~~~~~~~~s~~~d~~~~~w~~ 490 (501)
..-...|+.+.|++|++.|+.+|.-.+. .++..+|++.+..++.|.++|.+.+|.+
T Consensus 432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 3446789999999999999988765333 4444567888888999999999999998
Q ss_pred cCC
Q 010784 491 QCY 493 (501)
Q Consensus 491 ~~~ 493 (501)
..|
T Consensus 512 ~hy 514 (514)
T KOG2055|consen 512 HHY 514 (514)
T ss_pred ccC
Confidence 653
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-21 Score=170.17 Aligned_cols=261 Identities=15% Similarity=0.245 Sum_probs=198.0
Q ss_pred CCCceEEeeCCc-EEEeecCCeeeEEEEecccc---cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 111 KPHDHILLDNND-IFSTQGSSIQNIKIDNFLSE---SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 111 ~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~---~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
..+.++.|+... ..+++.+.|+.+++|.-... ...+..+.+. .-.|++... ...++++|+.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s-------------~S~y~~sgG~ 99 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS-------------QSLYEISGGQ 99 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh-------------cceeeeccCc
Confidence 348899998766 55566677999999975531 1112222222 333444333 3579999999
Q ss_pred CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeE
Q 010784 187 DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKL 263 (501)
Q Consensus 187 dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~ 263 (501)
.+.|+||| ...+.+.+++|+..|+++.+. ....+|++++..|.|.|..+.++.. ...+... ...|+-
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN----~~DeyiAsvs~gGdiiih~~~t~~~------tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN----NTDEYIASVSDGGDIIIHGTKTKQK------TTTFTIDSGQSVRL 169 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEec----CCcceeEEeccCCcEEEEecccCcc------ccceecCCCCeEEE
Confidence 99999999 445567789999999999985 7788999999999999999998764 3444333 456678
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--CcEEEEEcCCCceEeee
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--SSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~ 341 (501)
+.+++....+|.+++.+|.|.+||+....+.......+ ..+..-+++......+++..| ..|.+||.+..+....+
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H--sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH--SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhc--cCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 99999888899999999999999998876654433222 334445566666666666655 48999999987766655
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCe
Q 010784 342 AICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYK 404 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 404 (501)
. ...+...++|+++|.+|+.|...+ |..||++..+ .|+..+..|...|++++|-|..
T Consensus 248 ~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-----~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 T-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-----APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred e-ecCCcceeeecCCceEEEeecCCceEEEEecccCC-----CCceEeeecccceeEEEeeecc
Confidence 4 467889999999999999999888 9999999875 4578899999999999998873
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.9e-21 Score=159.05 Aligned_cols=262 Identities=13% Similarity=0.135 Sum_probs=189.4
Q ss_pred eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCc
Q 010784 156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT 233 (501)
Q Consensus 156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~ 233 (501)
-.|+.|++ .|.+||+|+.||.|.||| +...-+.+.+|..+|++++|| ++|+.|++++.|..
T Consensus 26 a~~~~Fs~-------------~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS----~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSR-------------WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS----RDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEecc-------------CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec----CCCCEeeeecCCce
Confidence 77889998 899999999999999999 666778899999999999998 89999999999999
Q ss_pred EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeee
Q 010784 234 VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK 313 (501)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (501)
|.+||+..+. +++.+. ..++|+...|+|.+.+.+++.-.+..-.+-++..++.. ++ .
T Consensus 89 i~lwDl~~gs------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~L------------p 145 (405)
T KOG1273|consen 89 IKLWDLLKGS------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VL------------P 145 (405)
T ss_pred eEEEeccCCC------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----ec------------c
Confidence 9999999987 355554 67899999999987777766655555555555432110 00 0
Q ss_pred cCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcc
Q 010784 314 CHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHV 392 (501)
Q Consensus 314 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~ 392 (501)
.+++ .. -.....+..|.+.|+++++|...| +.++|..+.+++ ..++-..
T Consensus 146 ~d~d------------------~d------ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v------as~rits 195 (405)
T KOG1273|consen 146 KDDD------------------GD------LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV------ASFRITS 195 (405)
T ss_pred CCCc------------------cc------cccccccccccCCCCEEEEecCcceEEEEecchheee------eeeeech
Confidence 0000 00 011112236888999999999888 999999997654 5555444
Q ss_pred -cCeEEEEecCC-eEEEEecCCCcEEEEeCCC-------c--ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784 393 -GSVTQLHMDPY-KIVTGGRDDLRINIWETDT-------G--MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP 461 (501)
Q Consensus 393 -~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 461 (501)
..|..+.++.. ++++.-+.|..|+.|+++. + ++.+.+.. .-....=.+++||.+|.|+++++. ..
T Consensus 196 ~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD---vVNk~~Wk~ccfs~dgeYv~a~s~-~a 271 (405)
T KOG1273|consen 196 VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD---VVNKLQWKKCCFSGDGEYVCAGSA-RA 271 (405)
T ss_pred heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH---HHhhhhhhheeecCCccEEEeccc-cc
Confidence 67888999988 8888878999999999862 1 11122210 001122356899999999999985 67
Q ss_pred ceEEEeeccCCc---------------------cceeecCCCCceeeeccc
Q 010784 462 GLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 462 g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~ 491 (501)
-.+++|.-+.|. .+++..-..|++.+|...
T Consensus 272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred eeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence 789999855433 122333377899999765
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.8e-22 Score=195.79 Aligned_cols=242 Identities=17% Similarity=0.205 Sum_probs=195.2
Q ss_pred CceEEeeCCcEE----EeecCCeeeEEEEecccc-----cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 113 HDHILLDNNDIF----STQGSSIQNIKIDNFLSE-----SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 113 i~~~~~~~~~~~----~~~g~~d~~i~vw~~~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
-+.++|.+.|.. ||.|..||.|.+||.... ...+.+...|++.|..+.|++. .++.||+
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------q~nlLAS 134 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------QGNLLAS 134 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------CCceeec
Confidence 467788776655 899999999999997651 3567778899999999999996 6789999
Q ss_pred eeCCCceEEecCCceeee--c--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 184 SSCDHSIRLWWKGSCQRC--F--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 184 ~~~dg~i~vwd~~~~~~~--~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
|+.||.|.|||..+.-.- + ....+.|.+++|. ......|++++.+|.+.|||++..+. +..+..+..
T Consensus 135 Ga~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN---rkvqhILAS~s~sg~~~iWDlr~~~p------ii~ls~~~~ 205 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN---RKVSHILASGSPSGRAVIWDLRKKKP------IIKLSDTPG 205 (1049)
T ss_pred cCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc---hhhhHHhhccCCCCCceeccccCCCc------ccccccCCC
Confidence 999999999993322222 2 1246789999996 45667899999999999999998763 444544443
Q ss_pred --ceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 260 --PIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 260 --~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
.+..+.|+|+....+++++.|. .|.+||+|...
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------------------------------------ 243 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------------------------------------ 243 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC------------------------------------------
Confidence 4778999998888899988774 47888887542
Q ss_pred CceEeeeccCCCcEEEEEEcCCC-cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec
Q 010784 335 MQKVMTPAICKPILHSFSIMPSK-SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR 410 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs 410 (501)
..++.+++|...|.++.|++.+ +++++++.|+ |.+|+..+++.+ .++....+++..+.|.|. .++++.+
T Consensus 244 -sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl------~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 244 -SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL------GELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred -CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe------eecCCCCcceeeeeecCCCcchhhhhe
Confidence 2345667899999999999975 8899999888 999999998765 777777889999999998 6888889
Q ss_pred CCCcEEEEeCCCcc
Q 010784 411 DDLRINIWETDTGM 424 (501)
Q Consensus 411 ~dg~i~iwd~~~~~ 424 (501)
.||.|.|+.+.+..
T Consensus 317 fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 317 FDGKISIYSLQGTD 330 (1049)
T ss_pred eccceeeeeeecCC
Confidence 99999999997654
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=2.3e-20 Score=154.08 Aligned_cols=287 Identities=19% Similarity=0.265 Sum_probs=206.8
Q ss_pred CceEEeeCCcEEEeecCC----eeeEEEEecccc--cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 113 HDHILLDNNDIFSTQGSS----IQNIKIDNFLSE--SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~----d~~i~vw~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
++...-+.+...+.+|.. ++.|.+-+++.+ .-..+.|..|.+.|+.++-+|. +..+|+|+..
T Consensus 17 lT~qtad~d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~------------d~~ilaT~yn 84 (370)
T KOG1007|consen 17 LTPQTADRDHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF------------DQRILATVYN 84 (370)
T ss_pred cCccccCccceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC------------CCceEEEEEe
Confidence 444455566666777754 677777776654 2345677889999999999995 6778888765
Q ss_pred C-------CceEEecCC-----------ceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784 187 D-------HSIRLWWKG-----------SCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 187 d-------g~i~vwd~~-----------~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 247 (501)
+ ..+.||... .++..+. .+-+.|.|+.|. |++..+++-. |..|.+|++........
T Consensus 85 ~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~----Pns~klasm~-dn~i~l~~l~ess~~va 159 (370)
T KOG1007|consen 85 DTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE----PNSDKLASMD-DNNIVLWSLDESSKIVA 159 (370)
T ss_pred ccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc----CCCCeeEEec-cCceEEEEcccCcchhe
Confidence 3 236789611 1222332 455689999997 7888888765 78999999998765211
Q ss_pred ccceeeccCCCCceeEEEEee-cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784 248 QALKATLYGHEKPIKLMSVAG-HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~~l~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (501)
......-.++....++-+|+| ++++.+++. .|+++..||+++.+....
T Consensus 160 ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s------------------------------ 208 (370)
T KOG1007|consen 160 EVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS------------------------------ 208 (370)
T ss_pred eecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc------------------------------
Confidence 111122233566778889998 467777665 578999999998753221
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 403 (501)
.-..|...|..+.|+|+ ..+|+++++|+ |+|||.++.+ .++.++.+|...|.++.|+|.
T Consensus 209 -------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 209 -------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred -------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCcc
Confidence 12357888999999998 56788888888 9999999875 458999999999999999998
Q ss_pred -eEEEEecCCCcEEEEeCCCcc-----------------------------cccccccCCCCCCCcceeeeEeeccccEE
Q 010784 404 -KIVTGGRDDLRINIWETDTGM-----------------------------LANSLLCNYPEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 404 -~~l~~gs~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 453 (501)
+++.+|+.|..|.+|...+-. .+.++ ..|...|.+++||.-..++
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-----dehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-----DEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-----cccccceEEEeeccCCCee
Confidence 999999999999999764311 11122 4688899999999866655
Q ss_pred -EEeecCCCceEEEeeccCC
Q 010784 454 -VTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 454 -~s~~~d~~g~i~~w~~~~~ 472 (501)
|+-++| |++.|=.+...
T Consensus 346 FASLSYD--GRviIs~V~r~ 363 (370)
T KOG1007|consen 346 FASLSYD--GRVIISSVPRF 363 (370)
T ss_pred EEEeccC--ceEEeecCChh
Confidence 556655 99888776543
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=7.9e-21 Score=167.98 Aligned_cols=271 Identities=15% Similarity=0.225 Sum_probs=197.5
Q ss_pred EEEeecCCeeeEEEEecccccccceecccCC--cceeEEEeeccCcCcccccCCCCcCcEEEE--eeCCCceEEec-CCc
Q 010784 123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHK--ARITCMRLFPLHETSLFRSEPQRTENVLVT--SSCDHSIRLWW-KGS 197 (501)
Q Consensus 123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~--~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~dg~i~vwd-~~~ 197 (501)
..+|+++ ..+++||+... .....+..|+ ..+.++.|+. . +.|++ .+.|..+++|. .++
T Consensus 5 l~~aS~g--d~~kl~D~s~~-~~~~~~~~~t~~pg~~s~~w~~-------------~-n~lvvas~~gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 5 LHVASTG--DKTKLSDFSDL-ETKSEYVHQTAEPGDFSFNWQR-------------R-NFLVVASMAGDKVMRIKEKDGK 67 (673)
T ss_pred eeeeccC--CceEEeecccc-cCccccccCCCCCcceeeeccc-------------c-ceEEEeecCCceeEEEecccCC
Confidence 3445554 46889997652 2222232222 2389999986 3 33444 45678899997 333
Q ss_pred ---eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784 198 ---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL 274 (501)
Q Consensus 198 ---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 274 (501)
....-+.....-.|++.. ....++++|+..+.|+|||++... +...+++|...|+++.++. ...+|
T Consensus 68 ~~~Vp~~~k~~gd~~~Cv~~~----s~S~y~~sgG~~~~Vkiwdl~~kl------~hr~lkdh~stvt~v~YN~-~Deyi 136 (673)
T KOG4378|consen 68 TPEVPRVRKLTGDNAFCVACA----SQSLYEISGGQSGCVKIWDLRAKL------IHRFLKDHQSTVTYVDYNN-TDEYI 136 (673)
T ss_pred CCccceeeccccchHHHHhhh----hcceeeeccCcCceeeehhhHHHH------HhhhccCCcceeEEEEecC-Cccee
Confidence 222111122233344332 344799999999999999999543 5778899999999999996 67799
Q ss_pred EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEE
Q 010784 275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSI 353 (501)
Q Consensus 275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~ 353 (501)
++++..|.|.|..+.++..... +... ...|.-+.+
T Consensus 137 Asvs~gGdiiih~~~t~~~tt~--------------------------------------------f~~~sgqsvRll~y 172 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKTTT--------------------------------------------FTIDSGQSVRLLRY 172 (673)
T ss_pred EEeccCCcEEEEecccCccccc--------------------------------------------eecCCCCeEEEeec
Confidence 9999999999999988743211 1111 334567889
Q ss_pred cCCCc-EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784 354 MPSKS-LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 354 ~~~~~-~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
+|..+ +|.++++++ |.+||....... ..-.+.|..+...|+|+|. .++++.+.|..|.+||+.+.+...++
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~-----~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPI-----FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcc-----cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 98754 566777888 999999876543 4556789999999999998 88888889999999999988777777
Q ss_pred ccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784 430 LCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK 478 (501)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s 478 (501)
. ...+...++|+++|.+|+.|. ..|.|..||+.....+++.
T Consensus 248 ~------y~~Plstvaf~~~G~~L~aG~--s~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 248 T------YSHPLSTVAFSECGTYLCAGN--SKGELIAYDMRSTKAPVAV 288 (673)
T ss_pred e------ecCCcceeeecCCceEEEeec--CCceEEEEecccCCCCceE
Confidence 3 256789999999999999999 6799999999988887763
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=5.1e-21 Score=155.91 Aligned_cols=303 Identities=16% Similarity=0.124 Sum_probs=200.1
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc-cCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
.+..+...++|+.|.-++. +.+|...|.+++|++.+. +....+. .|...|+.+.-.| +..+.+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p--------------~d~l~t 72 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIP--------------NDSLDT 72 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecC-ccchhhhhhccceeeceeecC--------------Ccchhh
Confidence 3446777799999998877 889999999999999984 7777777 6788899999888 478999
Q ss_pred eeCCCceEEecCCceeeeccCCCCceEEEEeee---cCC--CCCCEEEEeeCCCc-EEEEeccCCCccccccceeeccCC
Q 010784 184 SSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKL---LGD--GSGKILASGGEDAT-VRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 184 ~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~---~~~--~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
-+.|+.+.+|+.... .....|.-.++++.|++ ... +....++.-+.... +.+-|.....+ ....-..-.+.
T Consensus 73 qgRd~~L~lw~ia~s-~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq--v~i~dd~~~~K 149 (323)
T KOG0322|consen 73 QGRDPLLILWTIAYS-AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ--VQIADDSERSK 149 (323)
T ss_pred cCCCceEEEEEccCc-ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccce--eEccCchhccc
Confidence 999999999982210 11122444455555542 111 11122222221111 11111111110 00001111234
Q ss_pred CCceeEEEEeecC--CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 258 EKPIKLMSVAGHK--SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 258 ~~~v~~l~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
.+.+.+..+.... .-++++|.++|.|.+||+.++..+..+.. ..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~----------------------------------~~ 195 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ----------------------------------SS 195 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc----------------------------------cc
Confidence 5667776644322 34677788999999999998743222111 11
Q ss_pred ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC
Q 010784 336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL 413 (501)
Q Consensus 336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg 413 (501)
+.+.....|..+|.++.+.+.-..=++|+.+. +..|++.-.... ...-.+..-..-.|..+.+-|+ +++|+++.|+
T Consensus 196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc--ccccceEEecCCCccceEEccCCcEEeecccCC
Confidence 22233456899999999987654545566444 888888654211 0111222223456888999999 9999999999
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
+|+||+.++..++..+ ..|...|++++|+|+...+|+++ .|++|.+|++
T Consensus 274 RiRVyswrtl~pLAVL-----kyHsagvn~vAfspd~~lmAaas--kD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRTLNPLAVL-----KYHSAGVNAVAFSPDCELMAAAS--KDARISLWKL 322 (323)
T ss_pred cEEEEEeccCCchhhh-----hhhhcceeEEEeCCCCchhhhcc--CCceEEeeec
Confidence 9999999999999999 67889999999999999999999 6799999985
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.1e-20 Score=146.91 Aligned_cols=269 Identities=13% Similarity=0.146 Sum_probs=194.6
Q ss_pred ceEEeeCCcEEEeecCCeeeEEEEeccc---------ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 114 DHILLDNNDIFSTQGSSIQNIKIDNFLS---------ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~---------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
-+-+++|.+++++.|+.+|.|-+..+.+ ++..+...++|.++|+.++|.. .+|++|
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---------------~~Lls~ 78 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---------------DFLLSG 78 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---------------hheeec
Confidence 3446789999999999999999998753 3455666789999999999975 678887
Q ss_pred eCCCceEEec---CCc--eee-----eccCCC-----CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784 185 SCDHSIRLWW---KGS--CQR-----CFKGHN-----GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA 249 (501)
Q Consensus 185 ~~dg~i~vwd---~~~--~~~-----~~~~h~-----~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 249 (501)
+ ||.|+=|. ..+ ..+ ...-|. ..|++|-.- |..+-++.++.|+.++.||++++.
T Consensus 79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld----P~enSi~~AgGD~~~y~~dlE~G~------ 147 (325)
T KOG0649|consen 79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD----PSENSILFAGGDGVIYQVDLEDGR------ 147 (325)
T ss_pred c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec----cCCCcEEEecCCeEEEEEEecCCE------
Confidence 7 59999885 111 011 111222 357777764 555556666689999999999997
Q ss_pred ceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-----ecCCCceeeecCCCeEEEEeC
Q 010784 250 LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-----SVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 250 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 324 (501)
....+++|+..|.++.--. ....+++|++||++++||.++++.+..+...... .....+.+++.+.+-+++..|
T Consensus 148 i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG 226 (325)
T KOG0649|consen 148 IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG 226 (325)
T ss_pred EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC
Confidence 5888999999999988743 4557999999999999999999877655443332 123345666777777766666
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY 403 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 403 (501)
..+.+|.+++.+....+.. ...+..+.| +...+++++.++ +.-|.+..--. ..........++..++..
T Consensus 227 p~lslwhLrsse~t~vfpi-pa~v~~v~F--~~d~vl~~G~g~~v~~~~l~Gvl~-------a~ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPI-PARVHLVDF--VDDCVLIGGEGNHVQSYTLNGVLQ-------ANIPVESTACYSASWQTS 296 (325)
T ss_pred CceeEEeccCCCceEEEec-ccceeEeee--ecceEEEeccccceeeeeeccEEE-------EeccCCccceeeecccCC
Confidence 7999999999998887764 567778888 455788888888 99998864211 222222334556655544
Q ss_pred --eEEEEecCCCcEEEEe
Q 010784 404 --KIVTGGRDDLRINIWE 419 (501)
Q Consensus 404 --~~l~~gs~dg~i~iwd 419 (501)
+++..++..+++.|+.
T Consensus 297 p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 PIKFISIAGFSNKLHILK 314 (325)
T ss_pred ceEEEEecccceeeeeee
Confidence 7887777888887763
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-20 Score=158.04 Aligned_cols=279 Identities=16% Similarity=0.187 Sum_probs=193.3
Q ss_pred EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC--ce
Q 010784 123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG--SC 198 (501)
Q Consensus 123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~--~~ 198 (501)
..+|++-..|.|++||..++ +.+..+++|+..++.++|.... ....+.+|+.||+|++|| .. ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~d-----------s~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCD-----------SPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eeEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCC-----------CCCeeEEeccCCeEEEEEeecchhhh
Confidence 67888999999999999995 8899999999999999998631 357899999999999999 22 22
Q ss_pred eeeccCCC-CceEEEEeeecCCCCCCEEEEee----CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeE
Q 010784 199 QRCFKGHN-GPVSTLSDKLLGDGSGKILASGG----EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFL 273 (501)
Q Consensus 199 ~~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 273 (501)
...+..+. .+..|++. +..++.+++|. .+-.|.+||++..++ .+......|...|++++|+|.+.++
T Consensus 109 ~~~~~~~~~~~f~~ld~----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq----~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 109 RISWTQQSGTPFICLDL----NCKKNIIACGTELTRSDASVVLWDVRSEQQ----LLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred heeccCCCCCcceEeec----cCcCCeEEeccccccCceEEEEEEeccccc----hhhhhhhhccCcceeEEecCCCCCe
Confidence 33444454 46677765 24677888875 467899999998764 1334456899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784 274 LVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI 353 (501)
Q Consensus 274 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~ 353 (501)
|++||.||.|.++|+........ +...-.|...|.++.|
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDa-----------------------------------------L~~viN~~sSI~~igw 219 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDA-----------------------------------------LLHVINHGSSIHLIGW 219 (376)
T ss_pred EEeecccceEEeeecCCCcchhh-----------------------------------------HHHhhcccceeeeeee
Confidence 99999999999999986532111 1112235677899999
Q ss_pred cCCC-cEEEEEc-CCcEEEEecCCCCCCCCCCCc-cc------ccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCC
Q 010784 354 MPSK-SLICTGG-IGKAMTWDIRRSQDAVKPQPM-AE------LDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 354 ~~~~-~~l~~~~-~d~i~iwd~~~~~~~~~~~~~-~~------~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~ 421 (501)
..++ +.|.+-+ .....+|++..+........- .. ......-|.+. +|. ...++|+.-+...++-+.
T Consensus 220 ~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~--~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 220 LSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH--SPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred ecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc--cCCCcceEEEeccccCceeEEEee
Confidence 8876 3355555 444999999987654110000 00 00001112222 233 344444334555555433
Q ss_pred ---Cc---ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 422 ---TG---MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 422 ---~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
++ +.+..+. .+|...|.++.|...+.++.+|| +||.+.+|...
T Consensus 298 ~~~s~~~~~~~a~l~----g~~~eiVR~i~~~~~~~~l~TGG--EDG~l~~Wk~~ 346 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQ----GGHEEIVRDILFDVKNDVLYTGG--EDGLLQAWKVE 346 (376)
T ss_pred ecccccccCcccccc----CCcHHHHHHHhhhcccceeeccC--CCceEEEEecC
Confidence 23 3333442 45677899999999999999999 88999999963
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.1e-20 Score=178.43 Aligned_cols=293 Identities=16% Similarity=0.233 Sum_probs=207.6
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccC---CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDH---KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h---~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
++...+.|+|-...++++...-.|.|||.+.+ +....+..+ ...|+.+.+...- |..++++|+.|
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~-----------D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQ-----------DDALLLTASSD 1132 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeeccc-----------chhheeeeccC
Confidence 35778889999999999998999999999985 555555443 3569999987632 67899999999
Q ss_pred CceEEec---CC----ceeeecc---CC----CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 188 HSIRLWW---KG----SCQRCFK---GH----NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 188 g~i~vwd---~~----~~~~~~~---~h----~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
|.|+||+ .. +.+..+. ++ .+.=.-+.|. ...|.+++ ++.-..|+|||.+.... +...
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq---Q~~G~Ll~-tGd~r~IRIWDa~~E~~-----~~di 1203 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ---QQSGHLLV-TGDVRSIRIWDAHKEQV-----VADI 1203 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh---hhCCeEEe-cCCeeEEEEEeccccee-----Eeec
Confidence 9999997 21 1222111 11 1111234553 23454444 45578999999998663 2223
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
..+....|+++.-....++++++|..||.|++||.+.....
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------- 1244 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------- 1244 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc---------------------------------------
Confidence 34456678877776656899999999999999999875321
Q ss_pred CCceEeeeccCCCc--EEEEEEcCCCcE-EEEEcCCc-EEEEecCCCCCCCCCCCcccccCc---ccCeEEEEecCC-eE
Q 010784 334 TMQKVMTPAICKPI--LHSFSIMPSKSL-ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH---VGSVTQLHMDPY-KI 405 (501)
Q Consensus 334 ~~~~~~~~~~~~~~--v~~v~~~~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~-~~ 405 (501)
..+...+.|... |..+.+.+.|-- |++|+.+| |++||++..... ...+...| .+..+++..++. .+
T Consensus 1245 --s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e----~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1245 --SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE----TFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred --ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc----ccceeeeccccCccceeeeeccCCCe
Confidence 123345567666 999999887654 99999888 999999985321 11222222 235999999999 99
Q ss_pred EEEecCCCcEEEEeCCCcccccccccC--CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 406 VTGGRDDLRINIWETDTGMLANSLLCN--YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 406 l~~gs~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+|+|+. +.|+||++. |+.+..+... ........+.+++|+|-.-++|+|+ .|..|.+|....++
T Consensus 1319 iAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~--~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS--ADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc--CCceEEEeecCCcC
Confidence 999977 999999985 5555555321 1233456679999999999999997 67999999877654
No 164
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.7e-19 Score=165.90 Aligned_cols=251 Identities=13% Similarity=0.104 Sum_probs=172.4
Q ss_pred cEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
+.+++++.|+.|++|| +++.+..+..+.. +.+++|+ +++..+ ++++.++.|++||..+++. ...+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~----~dg~~l~~~~~~~~~v~~~d~~~~~~------~~~~~ 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLS----KDGKLLYVCASDSDTIQVIDLATGEV------IGTLP 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEEC----CCCCEEEEEECCCCeEEEEECCCCcE------EEecc
Confidence 5789999999999999 6777777776544 6788996 788766 5677889999999988753 44444
Q ss_pred CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
.+.. +..+.++|++..++++++.++.|++||+++.+.+.
T Consensus 71 ~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~---------------------------------------- 109 (300)
T TIGR03866 71 SGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA---------------------------------------- 109 (300)
T ss_pred CCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe----------------------------------------
Confidence 4433 46788987444444555678999999998753211
Q ss_pred ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecC
Q 010784 336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRD 411 (501)
Q Consensus 336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~ 411 (501)
.+. +...+.+++|+|++.++++++.+. +.+||..+.+.. .... ....+..++|+|+ + +++++..
T Consensus 110 ----~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~------~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 110 ----EIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV------DNVL-VDQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred ----Eee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE------EEEE-cCCCccEEEECCCCCEEEEEcCC
Confidence 111 123356799999999999888654 778898875432 2222 1234577899999 5 4456557
Q ss_pred CCcEEEEeCCCcccccccccCCCCCC--CcceeeeEeeccccEEEEeecCCCceEEEeeccC------------------
Q 010784 412 DLRINIWETDTGMLANSLLCNYPEEA--DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN------------------ 471 (501)
Q Consensus 412 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~------------------ 471 (501)
++.|++||+.+++.+..+..+....+ ......++|+|++++++++.. .++.|.+||...
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKTYEVLDYLLVGQRVWQLAF 256 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence 99999999999988776643211111 112346889999998766543 356799998542
Q ss_pred --Cccceee-cCCCCceeeecccCCC
Q 010784 472 --ATCPVLK-HEVQNDSKFWGPQCYS 494 (501)
Q Consensus 472 --~~~~~~s-~~~d~~~~~w~~~~~~ 494 (501)
.+..+++ .+.++.+++|++....
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3333444 4568899999987654
No 165
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=181.81 Aligned_cols=277 Identities=18% Similarity=0.249 Sum_probs=210.5
Q ss_pred ecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 108 SVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 108 ~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.|..+|.|..|+..|.++++|+.|..++||..+++ .+.....||.+.|+.++.+. ++.++++++.|
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~-------------~n~~iaaaS~D 253 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSS-------------NNTMIAAASND 253 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccch-------------hhhhhhhcccC
Confidence 35556999999999999999999999999999985 89999999999999999988 78899999999
Q ss_pred CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC-CCCceeEE
Q 010784 188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG-HEKPIKLM 264 (501)
Q Consensus 188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l 264 (501)
..|++|- .+..+..+.+|++.|++++|+| -. +.+.||++++||.+-... ......... ...-+.++
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtgavtaiafsP----~~----sss~dgt~~~wd~r~~~~---~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP----RA----SSSDDGTCRIWDARLEPR---IYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccceeeeccCc----cc----cCCCCCceEecccccccc---ccCCCCCCcccccceeee
Confidence 9999998 8888999999999999999983 22 678899999999982111 000111111 12344555
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 344 (501)
.+. +.+..++|++.|+.-..|.+..... .
T Consensus 323 ~~~-~~~~~f~Tgs~d~ea~n~e~~~l~~---------------------~----------------------------- 351 (1113)
T KOG0644|consen 323 LFE-NNGDRFLTGSRDGEARNHEFEQLAW---------------------R----------------------------- 351 (1113)
T ss_pred ecc-ccccccccccCCcccccchhhHhhh---------------------h-----------------------------
Confidence 555 3677899999999888887654311 0
Q ss_pred CCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeC
Q 010784 345 KPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWET 420 (501)
Q Consensus 345 ~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~ 420 (501)
...+.-+..+.+ ..+.+++-.+. +.+|++.++... +.+.+|...+..+.++|. ++..+++.||...|||+
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~------H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL------HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhh------hhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 000111111112 13455555666 999999998765 889999999999999998 77777789999999999
Q ss_pred CCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 421 DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
-.|.+++.+. .+ ...+...+||+||..++..- .-|.+.+.....+.
T Consensus 426 ~eg~pik~y~----~g-h~kl~d~kFSqdgts~~lsd--~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 426 WEGIPIKHYF----IG-HGKLVDGKFSQDGTSIALSD--DHGQLYILGTGQSK 471 (1113)
T ss_pred ccCCcceeee----cc-cceeeccccCCCCceEecCC--CCCceEEeccCCCc
Confidence 9999888875 33 34556679999999998865 67999998866544
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.9e-20 Score=166.69 Aligned_cols=294 Identities=14% Similarity=0.183 Sum_probs=213.0
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGS 221 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~ 221 (501)
.+...+.||++.|.+|...| .|..|++|+.||+|+||. ++.|++++. ..+.|.|++|.| .++
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp-------------~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P--~~~ 454 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP-------------SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNP--LSD 454 (733)
T ss_pred eeeeeEeccCCeEEEEEecC-------------CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecC--CCC
Confidence 44566789999999999998 899999999999999999 999999887 466899999974 233
Q ss_pred CCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE----EeCCCeEEEEECCCCccccce
Q 010784 222 GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT----ISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 222 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s----~s~dg~v~vwd~~~~~~~~~~ 297 (501)
-..|+++- ...+.|-+..-+.. +.. +.+ ...|++ ...++.+..|.-...+.....
T Consensus 455 ~~vLAvA~-~~~~~ivnp~~G~~------~e~--~~t------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~ 513 (733)
T KOG0650|consen 455 LCVLAVAV-GECVLIVNPIFGDR------LEV--GPT------------KELLASAPNESEPDAAVVTWSRASLDELEKG 513 (733)
T ss_pred ceeEEEEe-cCceEEeCccccch------hhh--cch------------hhhhhcCCCccCCcccceeechhhhhhhccc
Confidence 33455443 44465655443321 000 000 001111 123456667765433221111
Q ss_pred ecccceecCCCceeeecCCCeEEEEeC------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEE
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASG------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTW 371 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iw 371 (501)
....+.....+..+.++..+-++++- ..|.+.++.......-|+.-.+.|.++.|+|...+|++++...|+||
T Consensus 514 -v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiY 592 (733)
T KOG0650|consen 514 -VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIY 592 (733)
T ss_pred -eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEE
Confidence 11223556667788888877776642 27999999887777777666888999999999999999999889999
Q ss_pred ecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEeec
Q 010784 372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
|+.....+ ..+......|.+++++|. +++++ +.|+.+..||+.- .++.+++ ..|...++.++|++
T Consensus 593 dL~kqelv------KkL~tg~kwiS~msihp~GDnli~g-s~d~k~~WfDldlsskPyk~l-----r~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 593 DLSKQELV------KKLLTGSKWISSMSIHPNGDNLILG-SYDKKMCWFDLDLSSKPYKTL-----RLHEKAVRSVAFHK 660 (733)
T ss_pred ehhHHHHH------HHHhcCCeeeeeeeecCCCCeEEEe-cCCCeeEEEEcccCcchhHHh-----hhhhhhhhhhhhcc
Confidence 99985543 666666788999999997 66555 6999999999975 4667777 56788999999999
Q ss_pred cccEEEEeecCCCceEEEee----------------------------------ccCCccceeecCCCCceeeec
Q 010784 449 SGCRIVTASYGEPGLLQFRD----------------------------------FSNATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 449 ~g~~l~s~~~d~~g~i~~w~----------------------------------~~~~~~~~~s~~~d~~~~~w~ 489 (501)
.-.++++|+ +||.+.|+. +-+.+..+.+++.||++++|.
T Consensus 661 ryPLfas~s--dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 661 RYPLFASGS--DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ccceeeeec--CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 999999999 679988875 223444567889999999884
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.6e-21 Score=172.31 Aligned_cols=256 Identities=24% Similarity=0.389 Sum_probs=193.9
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC----------CceeeeccCCCCceEEEEeee
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK----------GSCQRCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~----------~~~~~~~~~h~~~v~~l~~s~ 216 (501)
.++..|.+.|+.++|.| ....|++++.||++++|+. -+.+.+|++|.++|.|++..
T Consensus 288 ~tl~s~~d~ir~l~~~~-------------sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~- 353 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHP-------------SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP- 353 (577)
T ss_pred eeeecchhhhhhhhcCC-------------CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-
Confidence 36678999999999988 6789999999999999972 24567899999999999996
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCcc----ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKR----GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
.++..+++|+.||+|+.|++.....+ ........+.||++.|+.++++. ....|++++.||++++|+.....
T Consensus 354 ---~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 354 ---SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ---CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcC
Confidence 89999999999999999977532211 11234567889999999999997 66779999999999999987765
Q ss_pred cccceecccceecCCCceeeecCCCeEEEE-eCC---cEEEEEcCCCceEeeeccC-------CCcEEEEEEcCCCcEEE
Q 010784 293 AVRSSCCVGMTSVPGVPVDMKCHESMLYIA-SGS---SVVTIDLRTMQKVMTPAIC-------KPILHSFSIMPSKSLIC 361 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~i~~~d~~~~~~~~~~~~~-------~~~v~~v~~~~~~~~l~ 361 (501)
. .........+.+..+++........ +.. .-.+++++....+..+... ...+..+..+|.+.+.+
T Consensus 430 ~----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 430 P----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred c----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 4 1122224445556665544432222 111 2333444444444433321 23467788899999999
Q ss_pred EEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc
Q 010784 362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
++.+++ |+++|..+++.+ +....|...++++++.|+ .++.+|+.||.+++|.+....++....
T Consensus 506 ~~hed~~Ir~~dn~~~~~l------~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKIL------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred ecccCCceecccccccccc------hheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 999999 999999997654 888899999999999999 999999999999999998777766553
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.2e-20 Score=156.99 Aligned_cols=246 Identities=17% Similarity=0.273 Sum_probs=179.7
Q ss_pred CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC 198 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~ 198 (501)
...++|.|+.-|.|+|.|..++ ++...+.+|.+.|+.+.|.|. +.++++++|.|.+|++|| +..|
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~------------~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPD------------RPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred CCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCC------------CCcEEEEecCCceEEEEeccCCeE
Confidence 3678999999999999999985 899999999999999999995 568999999999999999 7788
Q ss_pred eeec---cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc----------------------ccceee
Q 010784 199 QRCF---KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ----------------------QALKAT 253 (501)
Q Consensus 199 ~~~~---~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~----------------------~~~~~~ 253 (501)
+..| .+|.+.|.++.|+ .+|.++++++.|.++++|++...+.... .+...+
T Consensus 171 v~VfGG~egHrdeVLSvD~~----~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFS----LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred EEEecccccccCcEEEEEEc----CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 8776 5799999999997 8999999999999999999984322000 001112
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEc
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (501)
-.-|...|.|+.|. ++++++-|-++.|..|.... ++.+.... .....
T Consensus 247 ~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vk-----p~es~------------------------ 294 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVK-----PPESA------------------------ 294 (385)
T ss_pred cccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccC-----CCccc------------------------
Confidence 34577888888885 36899999999999998732 21111000 00000
Q ss_pred CCCceEeeeccCCCcEEE--EEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--CcccCeEEEEecCC-eEE
Q 010784 333 RTMQKVMTPAICKPILHS--FSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--GHVGSVTQLHMDPY-KIV 406 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~v~~--v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l 406 (501)
...+..+.-....|.- .+|.|-+++||.|...+ +.+||+++.+.. ...++. .....|...+|+.+ .++
T Consensus 295 --~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~----~~ttl~~s~~~~tVRQ~sfS~dgs~l 368 (385)
T KOG1034|consen 295 --TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP----KCTTLTHSKSGSTVRQTSFSRDGSIL 368 (385)
T ss_pred --eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc----cCceEEeccccceeeeeeecccCcEE
Confidence 0111223333344444 45566689999999888 999999987653 112222 12457889999999 777
Q ss_pred EEecCCCcEEEEeCC
Q 010784 407 TGGRDDLRINIWETD 421 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~ 421 (501)
+....|++|--||..
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 777799999999864
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=3.4e-19 Score=147.34 Aligned_cols=286 Identities=17% Similarity=0.217 Sum_probs=202.6
Q ss_pred eEEEecCCCCceEEee---CCcEEEeecCC----eeeEEEEecccc-ccc-ceecccCCcceeEEEeeccCcCcccccCC
Q 010784 104 VCFYSVAKPHDHILLD---NNDIFSTQGSS----IQNIKIDNFLSE-SYY-RATLSDHKARITCMRLFPLHETSLFRSEP 174 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~---~~~~~~~~g~~----d~~i~vw~~~~~-~~~-~~~~~~h~~~V~~~~~~~~~~~~~~~~~~ 174 (501)
..-|..+-++..+.|+ ..+-++|.|+. .+.|.|-.+... .+. ...--.|.-+++.+.|.|+...
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g------- 110 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKG------- 110 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccc-------
Confidence 4455666778888888 34567788875 355555544321 121 1222478899999999994210
Q ss_pred CCcCcEEEEeeCCCceEEecCC---ce---eee-----ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784 175 QRTENVLVTSSCDHSIRLWWKG---SC---QRC-----FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243 (501)
Q Consensus 175 ~~~~~~l~s~~~dg~i~vwd~~---~~---~~~-----~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 243 (501)
...++|||++ -.+|+|..+ .. ... -..+.+++++..|. .-+.+++.+++-|-+..|||++++.
T Consensus 111 -~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn---e~dp~~igtSSiDTTCTiWdie~~~ 184 (364)
T KOG0290|consen 111 -VYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN---EVDPNLIGTSSIDTTCTIWDIETGV 184 (364)
T ss_pred -cCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccc---cCCcceeEeecccCeEEEEEEeecc
Confidence 0125677665 469999622 11 111 12467899999997 5677899999999999999999862
Q ss_pred ccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784 244 KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS 323 (501)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
. ......+-.|..+|..|+|.....++|++.+.||.|+++|++..+...
T Consensus 185 ~---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST---------------------------- 233 (364)
T KOG0290|consen 185 S---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST---------------------------- 233 (364)
T ss_pred c---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce----------------------------
Confidence 1 113456778999999999997667899999999999999999764210
Q ss_pred CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784 324 GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM 400 (501)
Q Consensus 324 ~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 400 (501)
.+..-.....+...++|+++ -+++|+-..|. |.|.|++... .++..+++|.+.|+.++|
T Consensus 234 -------------IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-----tpva~L~~H~a~VNgIaW 295 (364)
T KOG0290|consen 234 -------------IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-----TPVARLRNHQASVNGIAW 295 (364)
T ss_pred -------------EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-----cceehhhcCcccccceEe
Confidence 11111112456778888874 67888877555 9999999874 568999999999999999
Q ss_pred cCC--eEEEEecCCCcEEEEeCCCccc------ccccccCCCCCCCcceeeeEeec-cccEEEEee
Q 010784 401 DPY--KIVTGGRDDLRINIWETDTGML------ANSLLCNYPEEADISTGCSAMAV-SGCRIVTAS 457 (501)
Q Consensus 401 ~~~--~~l~~gs~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~ 457 (501)
.|. ..+++++.|..+.+||+.+.-. +..+ ...+.|+.+.|++ .+.+|+.+.
T Consensus 296 aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay------~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 296 APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY------TAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred cCCCCceeeecCCcceEEEEecccccccCCCCchhhh------hccceeeeeeecccCCCEEEEEe
Confidence 998 7788888999999999976321 2222 1367899999995 567887775
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=5.7e-19 Score=167.01 Aligned_cols=278 Identities=13% Similarity=0.119 Sum_probs=200.5
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-Cce--ee----ecc
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K-GSC--QR----CFK 203 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~-~~~--~~----~~~ 203 (501)
+.+.+|++.....+...+ .-...|+|+.|+|. +.++++.|..+|+|.+|| . +.. .. ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~------------~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~ 288 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPF------------DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV 288 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccC------------CcceEEeeccCceEEEEEccCCCCCCCcccccccc
Confidence 479999998754555554 34567999999997 789999999999999999 2 211 11 123
Q ss_pred CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc------CCCCceeEEEEeecCCeEEEEE
Q 010784 204 GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY------GHEKPIKLMSVAGHKSFLLVTI 277 (501)
Q Consensus 204 ~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~~~~~~l~s~ 277 (501)
.|..+++.+.|.. +..+.-+++++.||.|..|+++.-..+.+..+..... .....+++++|.+.+...|+.|
T Consensus 289 sh~~~v~~vvW~~--~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQ--NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred cCCcCeEEEEEec--cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence 6889999999963 3333669999999999999887654422222222222 2334688999999899999999
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK 357 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~ 357 (501)
+.+|.|..=+-...+.... ...+....+..|.++|+++.++|-+
T Consensus 367 Te~G~v~~~~r~g~~~~~~------------------------------------~~~~~~~~~~~h~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPE------------------------------------VSYKGHSTFITHIGPVYAVSRNPFY 410 (555)
T ss_pred cCCcEEEEEeccCCccccc------------------------------------ccccccccccccCcceEeeecCCCc
Confidence 9999987744333221100 0012233556689999999999975
Q ss_pred -cEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc--cccccccC
Q 010784 358 -SLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM--LANSLLCN 432 (501)
Q Consensus 358 -~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~--~~~~~~~~ 432 (501)
.++.++++.+++||..... ..++..+..+...|++++|||. .+++++..||.|.+||+.... ++.+..
T Consensus 411 ~k~fls~gDW~vriWs~~~~-----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-- 483 (555)
T KOG1587|consen 411 PKNFLSVGDWTVRIWSEDVI-----ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-- 483 (555)
T ss_pred cceeeeeccceeEeccccCC-----CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc--
Confidence 4555566555999998832 2445778888888999999999 899999999999999997543 333332
Q ss_pred CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 433 YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
......+.+.|++.|+.|+.|. ..|.+++|++...
T Consensus 484 ---~~~~~l~~~~~s~~g~~lavGd--~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 484 ---VCSPALTRVRWSPNGKLLAVGD--ANGTTHILKLSES 518 (555)
T ss_pred ---ccccccceeecCCCCcEEEEec--CCCcEEEEEcCch
Confidence 2255677888999999999998 6799999998643
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-19 Score=154.35 Aligned_cols=287 Identities=13% Similarity=0.117 Sum_probs=205.9
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--------CCceeeec-cCCCCceEEEEe
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--------KGSCQRCF-KGHNGPVSTLSD 214 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--------~~~~~~~~-~~h~~~v~~l~~ 214 (501)
-+.+-+.+|.+.|+++.|+. ++++|++|+.|..++||+ +.+.+... ..|...|.|++|
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~-------------N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSH-------------NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhhhhhhhccccceeeecc-------------CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE
Confidence 34556779999999999998 899999999999999997 22333333 246789999999
Q ss_pred eecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 215 KLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 215 s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
. ..+.++++|..+++|...|+++.+. +..+. ...+.|..+..+|. .+.|++.+.++.|.+||.+..+
T Consensus 114 ~----~~N~~~~SG~~~~~VI~HDiEt~qs------i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 114 D----LENRFLYSGERWGTVIKHDIETKQS------IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred c----cCCeeEecCCCcceeEeeeccccee------eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCC
Confidence 5 7888999999999999999998763 33332 23458999999995 7789999999999999999875
Q ss_pred cccceecccceecCCCceeeecCCC---eEEEEe-CCcEEEEEcCCCceE-ee------eccCCCcEEEEEEcCCCcEEE
Q 010784 293 AVRSSCCVGMTSVPGVPVDMKCHES---MLYIAS-GSSVVTIDLRTMQKV-MT------PAICKPILHSFSIMPSKSLIC 361 (501)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~i~~~d~~~~~~~-~~------~~~~~~~v~~v~~~~~~~~l~ 361 (501)
......+.. ........+.++|. .+.++. .+.+.+||.+..+.. .. ++.....-.++.|+|+|+.+.
T Consensus 183 ~~~~~~~~A--N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 183 NPISLVLPA--NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred CCCceeeec--CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence 322222211 22333344445443 222222 247999999876542 11 111122346789999999999
Q ss_pred EEcCCc-EEEEecCCCCCCCCCCCcccccC------cccCeEEEEecCCeEEEEecCCCcEEEEeCCCcc----------
Q 010784 362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDG------HVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGM---------- 424 (501)
Q Consensus 362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~---------- 424 (501)
+--.+. -.+||+.+..+. +..+.. ....+.+++|..++-+++||.+-.|++|.+....
T Consensus 261 siRR~~~P~~~D~~S~R~~-----V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCF-----VLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred hhhccCCCEEeeeecccce-----eEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCc
Confidence 888777 778998875442 222221 1235778889888668899999999999885311
Q ss_pred -------------cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 425 -------------LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 425 -------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.+..+ .+|.+.++.+.|+|...+|++.+ -...+++|.
T Consensus 336 ~~~~~~~~~~i~~~~~VL-----rGHRSv~NQVRF~~H~~~l~SSG--VE~~~KlWS 385 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVL-----RGHRSVPNQVRFSQHNNLLVSSG--VENSFKLWS 385 (609)
T ss_pred chhhCchhheecceeEEE-----ecccccccceeecCCcceEeccc--hhhheeccc
Confidence 11222 57888999999999999999988 568999997
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=165.25 Aligned_cols=272 Identities=14% Similarity=0.151 Sum_probs=204.1
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
-|+.++|-|||..++.+.. ..+.+||...| ..+.++++|++.|+|++|+. ||..+++|+.|..|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG-~llqtLKgHKDtVycVAys~-------------dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAK-------------DGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc-ccccccccccceEEEEEEcc-------------CCceeccCCCceeEE
Confidence 4889999999988776543 46789999986 88999999999999999999 899999999999999
Q ss_pred Eec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784 192 LWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 192 vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 270 (501)
+|+ .-+-+..+ .|+..|.||.|. |-...|++++.+ ..-+|...... +...+ ....+.+.+|.. +
T Consensus 79 ~W~~klEG~LkY-SH~D~IQCMsFN----P~~h~LasCsLs-dFglWS~~qK~-------V~K~k-ss~R~~~CsWtn-D 143 (1081)
T KOG1538|consen 79 IWTSKLEGILKY-SHNDAIQCMSFN----PITHQLASCSLS-DFGLWSPEQKS-------VSKHK-SSSRIICCSWTN-D 143 (1081)
T ss_pred Eecccccceeee-ccCCeeeEeecC----chHHHhhhcchh-hccccChhhhh-------HHhhh-hheeEEEeeecC-C
Confidence 998 22222233 599999999995 788899998864 57789876543 22222 345677888884 8
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS 350 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~ 350 (501)
+++++.|-.+|+|.+-+-...+.+ .+..-.+...+|.+
T Consensus 144 GqylalG~~nGTIsiRNk~gEek~------------------------------------------~I~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEEKV------------------------------------------KIERPGGSNSPIWS 181 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCcce------------------------------------------EEeCCCCCCCCceE
Confidence 999999999999988754332111 11122235788999
Q ss_pred EEEcCC-----CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784 351 FSIMPS-----KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 351 v~~~~~-----~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~ 423 (501)
++|+|. ...+++...+. +.+|.+.... +..-+.-.-...|+.+-++ .++..|+.|+.+++|- +.|
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G 253 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG 253 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecC
Confidence 999996 24667777666 7777765321 1212222234568888888 7777777999999996 567
Q ss_pred ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 424 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
-.+.++ .....+|..++..|++++++.|+ .||+|-.|++.
T Consensus 254 vrLGTv-----g~~D~WIWtV~~~PNsQ~v~~GC--qDGTiACyNl~ 293 (1081)
T KOG1538|consen 254 VRLGTV-----GEQDSWIWTVQAKPNSQYVVVGC--QDGTIACYNLI 293 (1081)
T ss_pred eEEeec-----cccceeEEEEEEccCCceEEEEE--ccCeeehhhhH
Confidence 777777 44678999999999999999999 66999999843
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.1e-19 Score=156.43 Aligned_cols=218 Identities=21% Similarity=0.276 Sum_probs=169.8
Q ss_pred eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGHEKPIKLMSVAGHKSFLLVTI 277 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~ 277 (501)
.-.+.+|+++|..+.|+| .+.+.++|||.|.+|.||++..+... ....++..+.+|...|-.+.|+|...+.|+++
T Consensus 74 ~P~v~GHt~~vLDi~w~P---fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCP---FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCccCccccccccccCc---cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 345679999999999995 56679999999999999998765432 22345778899999999999999889999999
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK 357 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~ 357 (501)
+.|.+|.+||+.+++. +.++. |.+.|+++.|+.||
T Consensus 151 g~Dn~v~iWnv~tgea--------------------------------------------li~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEA--------------------------------------------LITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred cCCceEEEEeccCCce--------------------------------------------eeecC-CCCeEEEEEeccCC
Confidence 9999999999998853 22333 89999999999999
Q ss_pred cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC-eEEEEecCC-eEEEEec---CCCcEEEEeCCCccccccccc
Q 010784 358 SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS-VTQLHMDPY-KIVTGGR---DDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 358 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~-~~l~~gs---~dg~i~iwd~~~~~~~~~~~~ 431 (501)
.++++.+.|+ |||||.++++.+ .+-.+|.+. -..+.|-.+ .++.+|- .+..+-+||..+.+.-..+..
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v------~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e 259 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVV------SEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE 259 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEe------eecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence 9999999999 999999998765 555667652 334456556 7777763 477899999877543322211
Q ss_pred CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 432 NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
-..++.|.---|.+|.+++..+|. .|+.|+.|.+++...
T Consensus 260 ---lDtSnGvl~PFyD~dt~ivYl~GK-GD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 260 ---LDTSNGVLLPFYDPDTSIVYLCGK-GDSSIRYFEITNEPP 298 (472)
T ss_pred ---eccCCceEEeeecCCCCEEEEEec-CCcceEEEEecCCCc
Confidence 122445555567889999988887 799999999988774
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=3.2e-19 Score=147.42 Aligned_cols=254 Identities=19% Similarity=0.196 Sum_probs=188.5
Q ss_pred eEEEecCCCCceEEeeCC-cEEEeecCCe-------eeEEEEeccccc--------ccceecc-cCCcceeEEEeeccCc
Q 010784 104 VCFYSVAKPHDHILLDNN-DIFSTQGSSI-------QNIKIDNFLSES--------YYRATLS-DHKARITCMRLFPLHE 166 (501)
Q Consensus 104 ~~~~~~~~~i~~~~~~~~-~~~~~~g~~d-------~~i~vw~~~~~~--------~~~~~~~-~h~~~V~~~~~~~~~~ 166 (501)
..++.+...|-.++-+|- ..+++|...+ ..+.||.+.... +.+..|. .+-+.|.|+.|.|
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P--- 133 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP--- 133 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC---
Confidence 345556666888887764 4444544331 457789886432 2233333 5667899999999
Q ss_pred CcccccCCCCcCcEEEEeeCCCceEEec--CCce-eeec-----cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEe
Q 010784 167 TSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC-QRCF-----KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238 (501)
Q Consensus 167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~-~~~~-----~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd 238 (501)
++..+++-. |..|.+|+ .+.. +..+ .+|+...++-+|+| ..+++.+++. .|+++..||
T Consensus 134 ----------ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp--HHdgnqv~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 134 ----------NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP--HHDGNQVATT-SDSTLQFWD 199 (370)
T ss_pred ----------CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCC--CCccceEEEe-CCCcEEEEE
Confidence 788888877 88999998 3322 2222 24677788889985 3467777775 478999999
Q ss_pred ccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe
Q 010784 239 LSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM 318 (501)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (501)
+++..+ ....-..|...|..+.|+|+...+|++|+.||.|++||.+..+
T Consensus 200 ~RT~~~-----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------------------------- 248 (370)
T KOG1007|consen 200 LRTMKK-----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------------------------- 248 (370)
T ss_pred ccchhh-----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------------------------
Confidence 998775 4445567999999999999888999999999999999998753
Q ss_pred EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCC-----------------
Q 010784 319 LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDA----------------- 379 (501)
Q Consensus 319 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~----------------- 379 (501)
.++..+.+|...|.++.|+|. .+++++|+.|. |.+|...+-...
T Consensus 249 -----------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ds 311 (370)
T KOG1007|consen 249 -----------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDS 311 (370)
T ss_pred -----------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhh
Confidence 345677889999999999996 78889999888 999976542210
Q ss_pred ------CCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC
Q 010784 380 ------VKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 380 ------~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~ 422 (501)
.....+.++..|...|++++|+.. -++|+-|.||++.|=.+..
T Consensus 312 eer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 312 EERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred HHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 011234567789999999999876 8889999999999877653
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4.3e-19 Score=152.82 Aligned_cols=207 Identities=23% Similarity=0.301 Sum_probs=161.6
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---------CCceeeeccCCCCceEEEEeeec
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---------KGSCQRCFKGHNGPVSTLSDKLL 217 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---------~~~~~~~~~~h~~~v~~l~~s~~ 217 (501)
-.+.||+++|..++|+|. +.+.+||||.|.+|.||. ....+..+.+|...|.-++|+|
T Consensus 75 P~v~GHt~~vLDi~w~Pf------------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP- 141 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPF------------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP- 141 (472)
T ss_pred CCccCccccccccccCcc------------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc-
Confidence 345799999999999997 789999999999999996 1234667889999999999995
Q ss_pred CCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 218 GDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 218 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
...+.|++++.|.+|.+||+.+++. +.++. |...|.++.|+. ++.+|++.+.|..|+|||.++++.+..
T Consensus 142 --tA~NVLlsag~Dn~v~iWnv~tgea------li~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e- 210 (472)
T KOG0303|consen 142 --TAPNVLLSAGSDNTVSIWNVGTGEA------LITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSE- 210 (472)
T ss_pred --cchhhHhhccCCceEEEEeccCCce------eeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeee-
Confidence 5567999999999999999999985 45555 999999999996 899999999999999999999865332
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC-cEEEEEEcCCCcEEEEEc---CCc-EEEEe
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP-ILHSFSIMPSKSLICTGG---IGK-AMTWD 372 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~---~d~-i~iwd 372 (501)
-.+|.+ .-..+.|-.+|.++.+|- .++ +-+||
T Consensus 211 -------------------------------------------~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 211 -------------------------------------------GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred -------------------------------------------cccccCCCcceeEEeccCceeeeccccccccceeccC
Confidence 123432 234556777888666665 456 99999
Q ss_pred cCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc
Q 010784 373 IRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM 424 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~ 424 (501)
..+.+.. -...++.. .+.|.-=-++++ -+.++|-.|+.|+.|.+.+..
T Consensus 248 p~nl~eP---~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 248 PNNLEEP---IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccCc---ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 8876543 22334443 455666668888 555667789999999997654
No 176
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.4e-20 Score=161.32 Aligned_cols=314 Identities=16% Similarity=0.127 Sum_probs=227.9
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
+...+..|.+-|+.|.|+..|..+++|+.|..+.+||+.++...+.-..||...|..-.|.|.. +...+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-----------~d~ti 202 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-----------GDRTI 202 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-----------CCcCc
Confidence 3445667778899999999999999999999999999999766666678999999999999954 56789
Q ss_pred EEeeCCCceEEec---CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 182 VTSSCDHSIRLWW---KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 182 ~s~~~dg~i~vwd---~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
++++.||.|++=. ++.+. ..+..|.++|.-++.-| .....|.+++.|+.+.-+|++.+..... ......
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p---~sp~~f~S~geD~~v~~~Dlr~~~pa~~---~~cr~~ 276 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEP---DSPKPFLSCGEDAVVFHIDLRQDVPAEK---FVCREA 276 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecC---CCCCcccccccccceeeeeeccCCccce---eeeecc
Confidence 9999999999875 44333 44567999999999753 4456899999999999999988654211 112233
Q ss_pred CCC---ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 257 HEK---PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 257 ~~~---~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
+.. ....++..|.+...+++|+.|..+++||.+.-........+..+
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f------------------------------ 326 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKF------------------------------ 326 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhc------------------------------
Confidence 333 56788999888889999999999999998865332111100000
Q ss_pred CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCC--CCC----CCCc-ccccCccc--CeEEEEe-cC
Q 010784 334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQD--AVK----PQPM-AELDGHVG--SVTQLHM-DP 402 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~--~~~----~~~~-~~~~~h~~--~v~~l~~-~~ 402 (501)
.+........-.|++++++.++.-+.+...|- |+++.-..+.- +.. ...+ ..+++|.+ .|..+-| -|
T Consensus 327 --~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 327 --CPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred --CCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC
Confidence 00001112245689999997755454445444 99995433221 000 0112 23778854 5777755 56
Q ss_pred C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 403 Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 403 ~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
. .++++||.-|.|.||+-.+++.++-+. +....|+|+.-+|--..||+.|- |.-|+||.-..
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~eii~~Me-----gDr~VVNCLEpHP~~PvLAsSGi--d~DVKIWTP~~ 467 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTGEIIRFME-----GDRHVVNCLEPHPHLPVLASSGI--DHDVKIWTPLT 467 (559)
T ss_pred ccceEEecCccceEEEEecchhHHHHHhh-----cccceEeccCCCCCCchhhccCC--ccceeeecCCc
Confidence 7 999999999999999999999999884 33448999999999999999994 48999998533
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.8e-16 Score=153.73 Aligned_cols=344 Identities=25% Similarity=0.410 Sum_probs=244.9
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc-ceeEEEe-eccCcCcccccCCCCcCc-EE
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA-RITCMRL-FPLHETSLFRSEPQRTEN-VL 181 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~-~V~~~~~-~~~~~~~~~~~~~~~~~~-~l 181 (501)
....+...+.++.+++.+..++.++.++.+.+|+...+......+.++.. .+..+.+ .+ ++. .+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-------------DGNSIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-------------CcceEE
Confidence 45566777999999999999999999999999999875326666766443 7777777 55 555 55
Q ss_pred EEeeC-CCceEEec-C--CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccC
Q 010784 182 VTSSC-DHSIRLWW-K--GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 182 ~s~~~-dg~i~vwd-~--~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
+..+. |+.+.+|+ . ......+..|...|..+.|+ +++..+++++. |+.+++|++.... .+..+.+
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 196 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS----PDGKLLASGSSLDGTIKLWDLRTGK------PLSTLAG 196 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC----CCCCEEEecCCCCCceEEEEcCCCc------eEEeecc
Confidence 55444 99999999 4 47788889999999999997 78888888885 9999999999854 4777888
Q ss_pred CCCceeEEEEeecCCe-EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe-EEEEe--CCcEEEEEc
Q 010784 257 HEKPIKLMSVAGHKSF-LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIAS--GSSVVTIDL 332 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~~~d~ 332 (501)
|...|.++++.| ++. .+++++.|+.|++||...+..... ....+...... .+.++. .++.. .+.+++|++
T Consensus 197 ~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 197 HTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRS----TLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred CCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEee----ecCCCCcceeE-eECCCCCEEEEecCCCcEEEeee
Confidence 999999999996 554 566669999999998885544331 00011111111 333333 22222 348999999
Q ss_pred CCCce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc--cCcccCeEEEEecCC--eEE
Q 010784 333 RTMQK-VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL--DGHVGSVTQLHMDPY--KIV 406 (501)
Q Consensus 333 ~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~--~~l 406 (501)
+.... ...+..|...+.++.|.|++..+++++.++ +.+||....... ... ..|...+..+.+.++ .++
T Consensus 271 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL------SSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceE------EEeeecccCCceEEEEECCCCCEEE
Confidence 87775 444467889999999999888888887778 999988876543 333 367777889988433 455
Q ss_pred EEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE-eecCCCceEEEeeccCCcc-----------
Q 010784 407 TGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT-ASYGEPGLLQFRDFSNATC----------- 474 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s-~~~d~~g~i~~w~~~~~~~----------- 474 (501)
.++..|+.+.+|+........... ....+..+.+++ ...++. +. .++.+.+|+......
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGKPLKTLE------GHSNVLSVSFSP-DGRVVSSGS--TDGTVRLWDLSTGSLLRNLDGHTSRV 415 (466)
T ss_pred EeecCCCcEEeeecCCCceeEEec------CCceEEEEEECC-CCCEEEEec--CCCceEEEecccCeeeeeccCCCCcE
Confidence 554688999999998877222221 112278888888 543443 44 668899998654332
Q ss_pred ----------ceeecCCCCceeeecccC
Q 010784 475 ----------PVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 475 ----------~~~s~~~d~~~~~w~~~~ 492 (501)
.+++++.++.+++|+...
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 416 TSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 233456677777777654
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=1.9e-18 Score=154.51 Aligned_cols=265 Identities=14% Similarity=0.112 Sum_probs=192.7
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
+.|+.+..+...+.+++.+..+.-|++.+. ....+.-..+-|....+ +.+ ...........|+.++.||.+.+
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~--s~~~~~~p~df~pt~~h-~~~----rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRD--SVEVAKLPDDFVPTDMH-LGG----RSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccch--hhhhhhCCcccCCcccc-ccc----cccCCCCCcceEEEEcCCceEEE
Confidence 458888888888887777777777777643 22222222232322222 100 01111124568888999999999
Q ss_pred ec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784 193 WW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS 271 (501)
Q Consensus 193 wd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 271 (501)
-+ .++..+....|.+.+.|-.|+ ++|.-|+++++||.|++|.-... +..++.....+|.|++|.|+..
T Consensus 90 l~k~~rVE~sv~AH~~A~~~gRW~----~dGtgLlt~GEDG~iKiWSrsGM-------LRStl~Q~~~~v~c~~W~p~S~ 158 (737)
T KOG1524|consen 90 LNKSARVERSISAHAAAISSGRWS----PDGAGLLTAGEDGVIKIWSRSGM-------LRSTVVQNEESIRCARWAPNSN 158 (737)
T ss_pred ecccchhhhhhhhhhhhhhhcccC----CCCceeeeecCCceEEEEeccch-------HHHHHhhcCceeEEEEECCCCC
Confidence 99 888888899999999999996 89999999999999999987654 3455666778999999999766
Q ss_pred eEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEE
Q 010784 272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSF 351 (501)
Q Consensus 272 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v 351 (501)
+.+++.+. .+.+=-+... ..+...+.|.+-|.++
T Consensus 159 ~vl~c~g~--h~~IKpL~~n--------------------------------------------~k~i~WkAHDGiiL~~ 192 (737)
T KOG1524|consen 159 SIVFCQGG--HISIKPLAAN--------------------------------------------SKIIRWRAHDGLVLSL 192 (737)
T ss_pred ceEEecCC--eEEEeecccc--------------------------------------------cceeEEeccCcEEEEe
Confidence 66666553 3433222211 2334667899999999
Q ss_pred EEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784 352 SIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 352 ~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
.|++..+++++|++|. .++||... .++..-..|..+|++++|+|++.++.+|. ++++ |.
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~G-------~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R------------~~ 252 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQG-------ANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR------------FS 252 (737)
T ss_pred ecCccccceeecCCceeEEeecccC-------cccccCChhccceeeeeeccccceeeeee-eeee------------ec
Confidence 9999999999999999 99999873 34577788999999999999966666644 3444 21
Q ss_pred cCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 431 CNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 431 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
....+.|..++||+||..++.|+ ..|.+.+-
T Consensus 253 ----~p~~GSifnlsWS~DGTQ~a~gt--~~G~v~~A 283 (737)
T KOG1524|consen 253 ----SPRVGSIFNLSWSADGTQATCGT--STGQLIVA 283 (737)
T ss_pred ----CCCccceEEEEEcCCCceeeccc--cCceEEEe
Confidence 22367789999999999999998 55776553
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.1e-17 Score=156.84 Aligned_cols=330 Identities=13% Similarity=0.099 Sum_probs=221.7
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEeccc---ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS---ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
|..+++|.+++|++.++|+|..||.|.+|.--. .....+.+.-|.+.|++++|++ +|.+|+||+
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-------------~G~~LlSGG 270 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-------------DGAYLLSGG 270 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-------------CCceEeecc
Confidence 444589999999999999999999999996432 2345567788999999999999 899999999
Q ss_pred CCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--------
Q 010784 186 CDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-------- 255 (501)
Q Consensus 186 ~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------- 255 (501)
..|.+.+|. +++ .+-+..-.++|..+.++ +++++.+....|..|.+-...+..... .+..+.
T Consensus 271 ~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS----~ds~~~sl~~~DNqI~li~~~dl~~k~---tIsgi~~~~~~~k~ 342 (792)
T KOG1963|consen 271 REGVLVLWQLETGK-KQFLPRLGSPILHIVVS----PDSDLYSLVLEDNQIHLIKASDLEIKS---TISGIKPPTPSTKT 342 (792)
T ss_pred cceEEEEEeecCCC-cccccccCCeeEEEEEc----CCCCeEEEEecCceEEEEeccchhhhh---hccCccCCCccccc
Confidence 999999997 444 55667788999999998 889999999999999999876544210 111111
Q ss_pred CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCC------ceeeecCCCeEEEEeCC----
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV------PVDMKCHESMLYIASGS---- 325 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---- 325 (501)
...+-.+.++++| ..+.++-.+..|.|.+||+-+.+.+............+. +..+...-.+.++++..
T Consensus 343 ~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d 421 (792)
T KOG1963|consen 343 RPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARID 421 (792)
T ss_pred cccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeeh
Confidence 1234467788887 566788888999999999998877655544433322222 22233333355555431
Q ss_pred ---------cEEEEEcCCCceEe-----eeccCCCcEEEEEEcC-C-CcEEEEEcCCc-EEEEecCCCCCCCCC----CC
Q 010784 326 ---------SVVTIDLRTMQKVM-----TPAICKPILHSFSIMP-S-KSLICTGGIGK-AMTWDIRRSQDAVKP----QP 384 (501)
Q Consensus 326 ---------~i~~~d~~~~~~~~-----~~~~~~~~v~~v~~~~-~-~~~l~~~~~d~-i~iwd~~~~~~~~~~----~~ 384 (501)
.+++|-......-. ....|...+...++.+ . ....++++.|+ +++|-+...+...+. .+
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence 47778665443322 2235666655555544 3 33788888888 999998554433211 11
Q ss_pred cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEee----ccccEEEEeec
Q 010784 385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMA----VSGCRIVTASY 458 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~s~~~ 458 (501)
...-..|..++++++|+.+ .+++.+ .|++|.+||..+. ++..+. +. ....+..+.+. .++.....
T Consensus 502 ~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~--- 572 (792)
T KOG1963|consen 502 KAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTE-GS----RNWPIAELLFTAQTQNDGALVHA--- 572 (792)
T ss_pred eeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccc-cc----cccchHhHhhhcccccccceeec---
Confidence 1222237889999999999 888875 8999999999984 333333 11 12233333333 23333332
Q ss_pred CCCceEEEeecc
Q 010784 459 GEPGLLQFRDFS 470 (501)
Q Consensus 459 d~~g~i~~w~~~ 470 (501)
....+.+|++-
T Consensus 573 -~~~~l~~WNll 583 (792)
T KOG1963|consen 573 -TQQRLSVWNLL 583 (792)
T ss_pred -cCceEehHhhh
Confidence 34788888854
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7e-18 Score=145.27 Aligned_cols=294 Identities=11% Similarity=0.084 Sum_probs=201.9
Q ss_pred EecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc-----cccceecc-cCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 107 YSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE-----SYYRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~-----~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
..|..-|++|.|+.++.+||+|+.|..+++|+++.. .+++.... .|...|.|++|.. .+.+
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-------------~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-------------ENRF 119 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-------------CCee
Confidence 345555999999999999999999999999998632 13333332 3558899999987 6789
Q ss_pred EEEeeCCCceEEec--CCceeeecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 181 LVTSSCDHSIRLWW--KGSCQRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 181 l~s~~~dg~i~vwd--~~~~~~~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
+.+|..+++|.+-| +.+.+..+. ...+.|..|..+ |..+.|++.+.+|.|.+||.+....... ...+..
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~----P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN 192 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQH----PTDNTLIVVTRAKLVSFIDNRDRQNPIS---LVLPAN 192 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccC----CCCceEEEEecCceEEEEeccCCCCCCc---eeeecC
Confidence 99999999999999 444454443 234589999987 6688999999999999999987653211 122223
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc-e-ecccceecCCCceeeecCCCeEEEE---eCCcEEEEE
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS-S-CCVGMTSVPGVPVDMKCHESMLYIA---SGSSVVTID 331 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d 331 (501)
.......+.|+|....+|++.+..+-+.+||++..+.... . ...........-+...+++++.-+. .+..-.+||
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 4456678899998899999999999999999987543110 0 0011111111224444554433222 122455677
Q ss_pred cCCCceEeeeccCC-------CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC-----------------CCCCCcc
Q 010784 332 LRTMQKVMTPAICK-------PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA-----------------VKPQPMA 386 (501)
Q Consensus 332 ~~~~~~~~~~~~~~-------~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~-----------------~~~~~~~ 386 (501)
+-+..+......|. ..+.+++|--|. -+++|+++- |++|.+...... .-...+.
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 76654432222222 235677776544 499999988 999998642211 1123456
Q ss_pred cccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 387 ELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 387 ~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
.+++|...++.+.|+|. .++++.+-...++||.-.
T Consensus 352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEecccccccceeecCCcceEeccchhhheeccccc
Confidence 78899999999999999 888887889999999753
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=5.4e-18 Score=140.32 Aligned_cols=246 Identities=20% Similarity=0.272 Sum_probs=180.4
Q ss_pred EecCCCCceEEeeCCc-----EEEeecCCeeeEEEEecccc---cccceec-----ccCCcceeEEEeeccCcCcccccC
Q 010784 107 YSVAKPHDHILLDNND-----IFSTQGSSIQNIKIDNFLSE---SYYRATL-----SDHKARITCMRLFPLHETSLFRSE 173 (501)
Q Consensus 107 ~~~~~~i~~~~~~~~~-----~~~~~g~~d~~i~vw~~~~~---~~~~~~~-----~~h~~~V~~~~~~~~~~~~~~~~~ 173 (501)
+.++-|++.+.|.|+. .+|||.+ -.+++|.+... .++...+ ..+.+++++..|+..
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~--------- 161 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV--------- 161 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC---------
Confidence 4567789999999876 3566554 47888987632 1222222 346678999999875
Q ss_pred CCCcCcEEEEeeCCCceEEec--CC---ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784 174 PQRTENVLVTSSCDHSIRLWW--KG---SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 174 ~~~~~~~l~s~~~dg~i~vwd--~~---~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
+.+++.+++-|.+..||| .+ .....+-+|..+|..++|. ...-+.|++.+.||.||+||++..+. .
T Consensus 162 ---dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~---~~s~~~FASvgaDGSvRmFDLR~leH---S 232 (364)
T KOG0290|consen 162 ---DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFL---KGSRDVFASVGADGSVRMFDLRSLEH---S 232 (364)
T ss_pred ---CcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEec---cCccceEEEecCCCcEEEEEeccccc---c
Confidence 789999999999999999 33 2344567899999999997 34467899999999999999998653 0
Q ss_pred cceeeccCCCCceeEEEEeecCCeEEEEEeCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcE
Q 010784 249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSV 327 (501)
Q Consensus 249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (501)
..+..-.....+...++|++.+.+++++-..| ..|.+.|++...
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~----------------------------------- 277 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC----------------------------------- 277 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-----------------------------------
Confidence 11111122256778899998888888886654 568888887652
Q ss_pred EEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--
Q 010784 328 VTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-- 403 (501)
Q Consensus 328 ~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-- 403 (501)
..+..+++|.+.|+.++|.|. ...|+++++|. +.+||+...-......++.... ..+.|+.+.|++.
T Consensus 278 --------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 278 --------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP 348 (364)
T ss_pred --------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCC
Confidence 345678899999999999996 78999999999 9999998754321134444444 4678999999987
Q ss_pred eEEEEecCCCcEEE
Q 010784 404 KIVTGGRDDLRINI 417 (501)
Q Consensus 404 ~~l~~gs~dg~i~i 417 (501)
..++.+ .++.+.+
T Consensus 349 Dwiai~-~~kklei 361 (364)
T KOG0290|consen 349 DWIAIC-FGKKLEI 361 (364)
T ss_pred CEEEEE-ecCeeeE
Confidence 777776 5555554
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.1e-17 Score=141.63 Aligned_cols=196 Identities=17% Similarity=0.208 Sum_probs=149.6
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEECCCCccccceeccc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG 301 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 301 (501)
..++++..+|.|++||..+++ .+..++++...+..++|... .+..+.+|+.||+|++||+++...........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchh------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC
Confidence 578888899999999999976 58889999999999999854 56789999999999999999876543322211
Q ss_pred ceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCce-Ee-eeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEE
Q 010784 302 MTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQK-VM-TPAICKPILHSFSIMPS-KSLICTGGIGK-AMT 370 (501)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~-~~-~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~i 370 (501)
.......+++.+-+..++++|. .+.+||.|..+. +. -...|.+.|+++.|+|. .++|++||.|+ |.+
T Consensus 115 --~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 115 --QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred --CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 1123334555544445555542 699999999877 44 34579999999999995 78999999999 999
Q ss_pred EecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784 371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 371 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
||+...... ..+...-.|...|.++.|... +-+.+-+..++..+|+++.+.+...+
T Consensus 193 fD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 193 FDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred eecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 999876432 233344456788999999877 45666679999999999988766555
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.8e-18 Score=152.45 Aligned_cols=226 Identities=15% Similarity=0.229 Sum_probs=158.6
Q ss_pred eeeEEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec-ccCCcceeEEEeeccCcCcccccCCCCcCcE
Q 010784 102 LDVCFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL-SDHKARITCMRLFPLHETSLFRSEPQRTENV 180 (501)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 180 (501)
....+.+|.+=|+|+.|+.+|.+|++|+.|-.+.|||.-. .++++.+ .||.+.|.++.|.|.. ++.+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvKFvP~t-----------nnri 109 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVKFVPYT-----------NNRI 109 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEeeeccC-----------CCeE
Confidence 3445667778899999999999999999999999999886 3555544 7999999999999954 6789
Q ss_pred EEEeeCCCceEEecCC------------ceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCc-cc
Q 010784 181 LVTSSCDHSIRLWWKG------------SCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGK-RG 246 (501)
Q Consensus 181 l~s~~~dg~i~vwd~~------------~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~-~~ 246 (501)
++||..|..|+++|.. .....+..|...|..++-. +++ +.+.++++||+|+-+|++.... .+
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~----p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA----PNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecC----CCCCceEEEecCCcceeeecccCCccCCc
Confidence 9999999999999821 1234566799999988875 455 7899999999999999987432 00
Q ss_pred cccc---eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc-c----ee-------cccce------ec
Q 010784 247 QQAL---KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR-S----SC-------CVGMT------SV 305 (501)
Q Consensus 247 ~~~~---~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~----~~-------~~~~~------~~ 305 (501)
...+ ...+...--...++.++|....+|+.|+.|-..++||.+...+.. . .. ++.-+ ..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS 265 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence 0001 111122223567899999999999999999999999954321110 0 00 11111 11
Q ss_pred CC----C---ceeeecCCC--eEEEEeCC-cEEEEEcCCCceEeeecc
Q 010784 306 PG----V---PVDMKCHES--MLYIASGS-SVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 306 ~~----~---~~~~~~~~~--~~~~~~~~-~i~~~d~~~~~~~~~~~~ 343 (501)
.+ . ..-+.++|+ .+++.-++ .|+++|+..++....+..
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 11 1 122345555 55555444 899999998888766553
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6e-17 Score=153.73 Aligned_cols=328 Identities=16% Similarity=0.158 Sum_probs=222.2
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEeccccccc---ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYY---RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~---~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
..+|..++.|.+.+..-. ..+.+|+..++.+. ...-..|.-.++|.+++| +++++++|..||.
T Consensus 163 ~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-------------n~~~~Aa~d~dGr 228 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-------------NERYLAAGDSDGR 228 (792)
T ss_pred CccEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEecc-------------ccceEEEeccCCc
Confidence 467777777777655543 44566666642211 111235777799999999 8999999999999
Q ss_pred eEEec-CC-----ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 190 IRLWW-KG-----SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 190 i~vwd-~~-----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
|.+|. .+ .....+.=|..+|.+++|+ .+|.+|+||+..|.+.+|.+.++++ +.+..-.++|..
T Consensus 229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS----~~G~~LlSGG~E~VLv~Wq~~T~~k-------qfLPRLgs~I~~ 297 (792)
T KOG1963|consen 229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS----SDGAYLLSGGREGVLVLWQLETGKK-------QFLPRLGSPILH 297 (792)
T ss_pred EEEEeccccccccccceEEEecccccceeEEe----cCCceEeecccceEEEEEeecCCCc-------ccccccCCeeEE
Confidence 99996 32 2235566789999999998 8999999999999999999999863 555666789999
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce------ecCCCceeeecCCCe-E--EEEeCCcEEEEEcCC
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT------SVPGVPVDMKCHESM-L--YIASGSSVVTIDLRT 334 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~--~~~~~~~i~~~d~~~ 334 (501)
+.++| ++...+....|..|.+....+........-.... ...+....+..++.. . +.+..+.+.+||+.+
T Consensus 298 i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 298 IVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred EEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 99997 7778888888999999987655433222111111 123334444555522 2 222335899999988
Q ss_pred CceEeeecc-----C------CCcEEEEEEcCCCcEEEEEc--------CC-c--EEEEecCCCCCCCCCCCc-ccccCc
Q 010784 335 MQKVMTPAI-----C------KPILHSFSIMPSKSLICTGG--------IG-K--AMTWDIRRSQDAVKPQPM-AELDGH 391 (501)
Q Consensus 335 ~~~~~~~~~-----~------~~~v~~v~~~~~~~~l~~~~--------~d-~--i~iwd~~~~~~~~~~~~~-~~~~~h 391 (501)
.+.+..+.. + .-.+++++.+-.|.+++|.- .| . +++|-....... .... .....|
T Consensus 377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt--~~L~T~I~~PH 454 (792)
T KOG1963|consen 377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT--FILNTKINNPH 454 (792)
T ss_pred cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce--eEEEEEEecCC
Confidence 877765542 1 22467777787899999874 22 2 888977654432 1111 122467
Q ss_pred ccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccc----c-CCCCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784 392 VGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLL----C-NYPEEADISTGCSAMAVSGCRIVTASYGEPGL 463 (501)
Q Consensus 392 ~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~----~-~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~ 463 (501)
...+...++.+. ...++++.||.++||-+...+.+..-. + .....|..+++.++|+.||..|+.+- ++.
T Consensus 455 ~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~---~~~ 531 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF---DDT 531 (792)
T ss_pred CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec---CCE
Confidence 766666555443 367777899999999984433222110 0 00124678899999999998888773 479
Q ss_pred EEEeeccC
Q 010784 464 LQFRDFSN 471 (501)
Q Consensus 464 i~~w~~~~ 471 (501)
|.+||..+
T Consensus 532 Itiwd~~~ 539 (792)
T KOG1963|consen 532 ITIWDYDT 539 (792)
T ss_pred EEEecCCC
Confidence 99999877
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=6e-19 Score=158.86 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=177.0
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEeccc-------ccccceecccCCcceeEEEeeccCcCcccccCCCCc
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS-------ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~-------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
....+-..|..++|.+....+++++.++++++|+++. ..+++.+|.+|.++|.|+++.+ +
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-------------n 355 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-------------N 355 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-------------C
Confidence 5566667799999999999999999999999999832 1467889999999999999998 8
Q ss_pred CcEEEEeeCCCceEEec------------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784 178 ENVLVTSSCDHSIRLWW------------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR 245 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd------------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 245 (501)
+..+.+|+.||+|+.|+ .......+.||++.|..+++| .....|++++.||+++.|+......
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s----~~~~~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS----STKDRLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec----ccccceeeecCCceEEeeccCCcCc-
Confidence 99999999999999994 112345678999999999998 6777899999999999999876542
Q ss_pred ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC-----CCceeeecCCCeEE
Q 010784 246 GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP-----GVPVDMKCHESMLY 320 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 320 (501)
+........+.-..+.+......+.++...-+.--++++..... .........+ ..+..+..+++.-+
T Consensus 431 ----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~---~~~~~s~~~~~~~~~~~in~vVs~~~~~~ 503 (577)
T KOG0642|consen 431 ----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD---LLIFESSASPGPRRYPQINKVVSHPTADI 503 (577)
T ss_pred ----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh---eeeccccCCCcccccCccceEEecCCCCe
Confidence 11211212222345555432222333333333333333333322 2221111111 11222223333222
Q ss_pred EEe---CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 321 IAS---GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 321 ~~~---~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
..+ ...|+++|..++..+.....|...++++++.|+|-+|.+++.|+ +++|.+....+.
T Consensus 504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 222 23899999999999999999999999999999999999999999 999999875543
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-17 Score=162.69 Aligned_cols=271 Identities=14% Similarity=0.202 Sum_probs=182.5
Q ss_pred EecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCc---------eeeeccCCCC
Q 010784 137 DNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGS---------CQRCFKGHNG 207 (501)
Q Consensus 137 w~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~h~~ 207 (501)
|+.+ +..+..+..|...|..++.++. .+.+|+|||.||+|++||..+ ...++.--..
T Consensus 1034 W~p~--G~lVAhL~Ehs~~v~k~a~s~~------------~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1034 WNPR--GILVAHLHEHSSAVIKLAVSSE------------HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS 1099 (1431)
T ss_pred CCcc--ceEeehhhhccccccceeecCC------------CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC
Confidence 5555 5788889999999999999873 569999999999999998211 2223333466
Q ss_pred ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc-ccccceeeccCC-CCc-eeEEEEeecCCe-EEEEEeCCCeE
Q 010784 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR-GQQALKATLYGH-EKP-IKLMSVAGHKSF-LLVTISKDSKV 283 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~-~~~-v~~l~~~~~~~~-~l~s~s~dg~v 283 (501)
.+.++... ..++.+|.|+.||.|++.+++..... ...........+ .+. |..-++...... .++.+..-+.|
T Consensus 1100 r~~~vt~~----~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1100 RVEKVTMC----GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred ceEEEEec----cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence 78888876 78899999999999999999873210 000111111222 222 233334333334 67777788888
Q ss_pred EEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784 284 RVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
..||++........ ......+.|++++.+|.+++++.|
T Consensus 1176 v~~D~r~~~~~w~l------------------------------------------k~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRL------------------------------------------KNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred EEecchhhhhHHhh------------------------------------------hcCccccceeEEEecCCceEEEEe
Confidence 88888765322111 112236789999999999999999
Q ss_pred cCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-----eEEEEec-CCCcEEEEeCCCcccccccccCC--
Q 010784 364 GIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-----KIVTGGR-DDLRINIWETDTGMLANSLLCNY-- 433 (501)
Q Consensus 364 ~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-----~~l~~gs-~dg~i~iwd~~~~~~~~~~~~~~-- 433 (501)
+..| +.+||+|-...+ ... .++..+++.+..+|. ..+++|+ ..+.|.+|++.+|.+..++....
T Consensus 1214 ts~G~l~lWDLRF~~~i------~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~ 1287 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFRVPI------LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGA 1287 (1431)
T ss_pred cCCceEEEEEeecCcee------ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCC
Confidence 9988 999999986543 332 234577888877764 3455555 78899999999998777664431
Q ss_pred -------CC-----CCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccc
Q 010784 434 -------PE-----EADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCP 475 (501)
Q Consensus 434 -------~~-----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~ 475 (501)
+. .+.-....+++..-+.++.+|+ .|..|+.||...+...
T Consensus 1288 p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltgg--sd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1288 PILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGG--SDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cchhhhcccccCCCCCcccceeeecccCCceeeecC--CccceeeccCCCcccc
Confidence 00 1122233344555567888888 5699999997766554
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=139.76 Aligned_cols=231 Identities=14% Similarity=0.166 Sum_probs=165.8
Q ss_pred eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc------ccceeeccC-CCCceeEEEEee------cCCeEEE
Q 010784 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ------QALKATLYG-HEKPIKLMSVAG------HKSFLLV 275 (501)
Q Consensus 209 v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~------~~~~~~~~~-~~~~v~~l~~~~------~~~~~l~ 275 (501)
.....|+ |+|..|++-+.|..+++|++....-... ......++- ....|..-+|-+ .+.++++
T Consensus 52 ~kgckWS----PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 52 LKGCKWS----PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hccceeC----CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 3456887 8999999999999999999864221000 000111111 123344444432 1456777
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC---cEEEEE
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP---ILHSFS 352 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~v~~v~ 352 (501)
+.+.+.-|++||.-+++...+.. .-.|.. ...+++
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~------------------------------------------~ydh~de~taAhsL~ 165 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYR------------------------------------------AYDHQDEYTAAHSLQ 165 (406)
T ss_pred eccccCceeeeeccccccccchh------------------------------------------hhhhHHhhhhheeEE
Confidence 77888888888887775432211 111222 346899
Q ss_pred EcCCCcEEEEEcCCcEEEEec-CCCCCCCCCCCcccc-----cCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc
Q 010784 353 IMPSKSLICTGGIGKAMTWDI-RRSQDAVKPQPMAEL-----DGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM 424 (501)
Q Consensus 353 ~~~~~~~l~~~~~d~i~iwd~-~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~ 424 (501)
|+|||..|++|....|+++|+ +.+... ++... .+..+-+.+++|+|. +.++.|+.-.++-|+.-..+.
T Consensus 166 Fs~DGeqlfaGykrcirvFdt~RpGr~c----~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~ 241 (406)
T KOG2919|consen 166 FSPDGEQLFAGYKRCIRVFDTSRPGRDC----PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR 241 (406)
T ss_pred ecCCCCeEeecccceEEEeeccCCCCCC----cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence 999999999998888999999 554432 11221 233677889999998 799999999999999998899
Q ss_pred cccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc-------------------------CCccceeec
Q 010784 425 LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS-------------------------NATCPVLKH 479 (501)
Q Consensus 425 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~-------------------------~~~~~~~s~ 479 (501)
++..+ .+|.+.|+.++|.++|+.|++|.. .+-.|..||+. +.++.+++|
T Consensus 242 pl~ll-----ggh~gGvThL~~~edGn~lfsGaR-k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG 315 (406)
T KOG2919|consen 242 PLQLL-----GGHGGGVTHLQWCEDGNKLFSGAR-KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG 315 (406)
T ss_pred ceeee-----cccCCCeeeEEeccCcCeeccccc-CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc
Confidence 99988 688999999999999999999987 67788888843 455668899
Q ss_pred CCCCceeeecccCCCC
Q 010784 480 EVQNDSKFWGPQCYSD 495 (501)
Q Consensus 480 ~~d~~~~~w~~~~~~~ 495 (501)
+.||.|++|+++..-+
T Consensus 316 ~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 316 DTDGSVRVWDLKDLGN 331 (406)
T ss_pred CCCccEEEEecCCCCC
Confidence 9999999999987544
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=2.4e-15 Score=145.71 Aligned_cols=316 Identities=25% Similarity=0.403 Sum_probs=232.1
Q ss_pred CCceEEe-eCCcE-EEeec-CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-C
Q 010784 112 PHDHILL-DNNDI-FSTQG-SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-D 187 (501)
Q Consensus 112 ~i~~~~~-~~~~~-~~~~g-~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d 187 (501)
.+..+.+ ++++. +++.. ..++.+.+|+..........+..|...|.+++|+| ++..+++++. |
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~~~~~ 177 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-------------DGKLLASGSSLD 177 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-------------CCCEEEecCCCC
Confidence 5666666 77776 55544 44999999999863377788899999999999999 6778888885 9
Q ss_pred CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCC-EEEEeeCCCcEEEEeccCCCcccccccee-eccCCCCceeE
Q 010784 188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK-ILASGGEDATVRLWSLSSSGKRGQQALKA-TLYGHEKPIKL 263 (501)
Q Consensus 188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~ 263 (501)
+.+++|+ .+..+..+.+|...|.+++|+ +++. .+++++.|+.|++||...+. ... .+.+|...+ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~~-~ 246 (466)
T COG2319 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFS----PDGGLLIASGSSDGTIRLWDLSTGK------LLRSTLSGHSDSV-V 246 (466)
T ss_pred CceEEEEcCCCceEEeeccCCCceEEEEEc----CCcceEEEEecCCCcEEEEECCCCc------EEeeecCCCCcce-e
Confidence 9999999 457888888899999999997 6776 56666999999999888554 344 577888775 4
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCcc-ccceecccceecCCCceeeecCCCe-EEEEeC--CcEEEEEcCCCceEe
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSA-VRSSCCVGMTSVPGVPVDMKCHESM-LYIASG--SSVVTIDLRTMQKVM 339 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~~~d~~~~~~~~ 339 (501)
..|++ ++..+++++.|+.+++|+++.... .... ..+...+..+.+.+.. .+.+.+ +.+.+||.++.....
T Consensus 247 ~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 247 SSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTL-----SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred EeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEE-----ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 47887 457888999999999999987754 1111 2224555556666532 233222 358999999888776
Q ss_pred eec--cCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc
Q 010784 340 TPA--ICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR 414 (501)
Q Consensus 340 ~~~--~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~ 414 (501)
... .|...+..+.+.+++..++.+ ..++ +.+|+....... ....... .+..+.+.+. .++..+..++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 393 (466)
T COG2319 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL------KTLEGHS-NVLSVSFSPDGRVVSSGSTDGT 393 (466)
T ss_pred EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee------EEecCCc-eEEEEEECCCCCEEEEecCCCc
Confidence 665 777789999994332455555 5667 888999886411 2222222 2777777663 33333578999
Q ss_pred EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
+.+|+............. ...+....+++++..+++++ .++.+++|+...
T Consensus 394 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 443 (466)
T COG2319 394 VRLWDLSTGSLLRNLDGH-----TSRVTSLDFSPDGKSLASGS--SDNTIRLWDLKT 443 (466)
T ss_pred eEEEecccCeeeeeccCC-----CCcEEEEEECCCCcEEEEec--CCCcEEEEeccC
Confidence 999999988777766321 16788899999999999977 669999999888
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1e-16 Score=129.55 Aligned_cols=231 Identities=13% Similarity=0.108 Sum_probs=157.8
Q ss_pred CcCcEEEEeeCCCceEEec-----------CC-ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC
Q 010784 176 RTENVLVTSSCDHSIRLWW-----------KG-SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG 243 (501)
Q Consensus 176 ~~~~~l~s~~~dg~i~vwd-----------~~-~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 243 (501)
|.+++|+.|+.+|+|.+.. .+ ..+..+++|.++|..++|+ ..+|++|+ ||.|+-|..+...
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~------d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH------DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee------hhheeecc-CceEEEeeehhhh
Confidence 3899999999999999985 11 2344568999999999995 35777776 4999999877644
Q ss_pred cccccccee--eccCC-----CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC
Q 010784 244 KRGQQALKA--TLYGH-----EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE 316 (501)
Q Consensus 244 ~~~~~~~~~--~~~~~-----~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (501)
+....+..- ...-| -..|+++.+.|..+. +++++.|+.++-||+++++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~------------------------ 147 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGR------------------------ 147 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCE------------------------
Confidence 311000000 01112 235788888885444 4555588999999988874
Q ss_pred CeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc---ccccCc-
Q 010784 317 SMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM---AELDGH- 391 (501)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~---~~~~~h- 391 (501)
..+++++|.+.|.++.--.....+++|++|+ +|+||.++.+.+...++. ..+..|
T Consensus 148 --------------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 148 --------------------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred --------------------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 3467889999999998866666788999888 999999998765111111 112222
Q ss_pred ccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
...|.+++.+.+- +++| ..-.+.+|++++.++..+|.. ..++..+.|.. +.+++++ +...|.-|.++
T Consensus 208 g~wigala~~edW-lvCG-gGp~lslwhLrsse~t~vfpi------pa~v~~v~F~~--d~vl~~G--~g~~v~~~~l~ 274 (325)
T KOG0649|consen 208 GKWIGALAVNEDW-LVCG-GGPKLSLWHLRSSESTCVFPI------PARVHLVDFVD--DCVLIGG--EGNHVQSYTLN 274 (325)
T ss_pred CceeEEEeccCce-EEec-CCCceeEEeccCCCceEEEec------ccceeEeeeec--ceEEEec--cccceeeeeec
Confidence 3457788777764 4444 445799999999998888842 45677777744 4666666 44677777654
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=8.5e-19 Score=164.62 Aligned_cols=243 Identities=19% Similarity=0.303 Sum_probs=189.2
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
.+.++.+.||...|+|+.|.. .|.++++|+.|..++||. ++.++....||.+.|+.++.+ .
T Consensus 180 mk~ikrLlgH~naVyca~fDr-------------tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs----~ 242 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDR-------------TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS----S 242 (1113)
T ss_pred HHHHHHHHhhhhheeeeeecc-------------ccceEeecCccceeeeeeccchhhhccCCCCccccchhccc----h
Confidence 355677889999999999988 899999999999999998 888999999999999999985 6
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
++.++++++.|..|++|.+..+. ++..+.+|++.|++|+|+|- .+.+.||++++||.+-...+.....
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~------pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp- 310 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGA------PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRP- 310 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCc------hHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCC-
Confidence 77889999999999999999987 68999999999999999983 3788999999999882211100000
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
..+. ....+.++.|..++.-+++|+.++ -..|.+...
T Consensus 311 --------------------------------------~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l--- 348 (1113)
T KOG0644|consen 311 --------------------------------------LKFT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL--- 348 (1113)
T ss_pred --------------------------------------CCcc-cccceeeeeccccccccccccCCcccccchhhHh---
Confidence 0001 134566777878888999999888 777776532
Q ss_pred CCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE-EEe
Q 010784 380 VKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI-VTA 456 (501)
Q Consensus 380 ~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~s~ 456 (501)
..+...+.-+..+.+ .+.++.-.+..+.+|++.+|.+.+.+ .+|...+..+.++|-+..+ .++
T Consensus 349 ---------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-----~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 349 ---------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-----MGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred ---------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-----cccccceeeeeecCCCcHhhhhc
Confidence 223333333444434 45555567889999999999999988 6788899999999977655 466
Q ss_pred ecCCCceEEEeeccCC
Q 010784 457 SYGEPGLLQFRDFSNA 472 (501)
Q Consensus 457 ~~d~~g~i~~w~~~~~ 472 (501)
+ .||...|||+-.+
T Consensus 415 g--~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 415 G--YDGSTIIWDIWEG 428 (1113)
T ss_pred c--CCCceEeeecccC
Confidence 6 5599999996543
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7.5e-18 Score=151.24 Aligned_cols=260 Identities=16% Similarity=0.211 Sum_probs=170.0
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeec-cCCCCceEEEEeeecCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCF-KGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~-~~h~~~v~~l~~s~~~~~ 220 (501)
.....|.||++.|+|++|+. +|.+|++|+.|-.+.||| ..+.+..+ .+|.+.|.++.|-| ..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~-------------dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP--~t 105 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNA-------------DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVP--YT 105 (758)
T ss_pred chhhhhccccceecceeecC-------------CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeec--cC
Confidence 44567899999999999999 899999999999999999 55555554 58999999999975 45
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCcc----ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKR----GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS 296 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 296 (501)
+..++++|+.|..|+++|+...+.. +.......+..|...|..|+..|...+.+.++++||+|+-+|++....-..
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 6689999999999999999863221 112245566789999999999997779999999999999999997532111
Q ss_pred eecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecC
Q 010784 297 SCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIR 374 (501)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~ 374 (501)
.. ...... ..+...--...++.++|. ..+|++|+.|- .++||.+
T Consensus 186 ~~-------~~~~~l---------------------------~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 186 DE-------DCPSIL---------------------------VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cc-------cccHHH---------------------------HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 00 000000 011111233568889986 67899999999 9999976
Q ss_pred CCCCCCCCCCcccccCcccCeEEEEec-CCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEE
Q 010784 375 RSQDAVKPQPMAELDGHVGSVTQLHMD-PYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRI 453 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 453 (501)
..... +.. .... ... |. .++.|+.|....-+...-.. ..-...++-+.|+|+|.-|
T Consensus 232 r~lks--------~~s--~~~~--~~~pp~-------~~~cv~yf~p~hlkn~~gn~----~~~~~~~t~vtfnpNGtEl 288 (758)
T KOG1310|consen 232 RVLKS--------FRS--DGTM--NTCPPK-------DCRCVRYFSPGHLKNSQGNL----DRYITCCTYVTFNPNGTEL 288 (758)
T ss_pred hhccC--------CCC--Cccc--cCCCCc-------ccchhheecCccccCccccc----ccceeeeEEEEECCCCcEE
Confidence 53221 111 0010 011 10 11112222111100000000 0001235678999999766
Q ss_pred EEeecCCCceEEEeeccCCcccee
Q 010784 454 VTASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
++.- ....|+++|+..++.+..
T Consensus 289 Lvs~--~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 289 LVSW--GGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEee--CCeEEEEEeecCCCCcee
Confidence 6554 336899999998876544
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=2.2e-17 Score=151.67 Aligned_cols=251 Identities=15% Similarity=0.199 Sum_probs=187.2
Q ss_pred ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 155 RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 155 ~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
.|+.++|-| ||..|+.+. +..+.+|| .|..+.++++|...|.|++|+ .+|+.+++|+.|.
T Consensus 14 ci~d~afkP-------------DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys----~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKP-------------DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYA----KDGKRFASGSADK 75 (1081)
T ss_pred chheeEECC-------------CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEc----cCCceeccCCCce
Confidence 899999999 777777766 45688999 889999999999999999997 8999999999999
Q ss_pred cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM 312 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (501)
.|.+|+-.-... .-..|+..|.|+.|+| -...+++++-. ..-+|..........
T Consensus 76 ~VI~W~~klEG~--------LkYSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~K~---------------- 129 (1081)
T KOG1538|consen 76 SVIIWTSKLEGI--------LKYSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVSKH---------------- 129 (1081)
T ss_pred eEEEecccccce--------eeeccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHHhh----------------
Confidence 999998765431 2236999999999998 66788888764 367787665422110
Q ss_pred ecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc
Q 010784 313 KCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH 391 (501)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h 391 (501)
.-...+.+++|..||++++.|-.++ |.|-+-...+. ..+..-.+.
T Consensus 130 ------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek----~~I~Rpgg~ 175 (1081)
T KOG1538|consen 130 ------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK----VKIERPGGS 175 (1081)
T ss_pred ------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc----eEEeCCCCC
Confidence 0145678999999999999999888 88775433221 123333456
Q ss_pred ccCeEEEEecCC------eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEE
Q 010784 392 VGSVTQLHMDPY------KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQ 465 (501)
Q Consensus 392 ~~~v~~l~~~~~------~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~ 465 (501)
..+|.+++|+|. .+++......++.++.+. |+.+..- ..-.-...++.+.++|.++..||.| +.+.
T Consensus 176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~-----r~L~FdP~CisYf~NGEy~LiGGsd--k~L~ 247 (1081)
T KOG1538|consen 176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKD-----RALNFDPCCISYFTNGEYILLGGSD--KQLS 247 (1081)
T ss_pred CCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccc-----ccCCCCchhheeccCCcEEEEccCC--CceE
Confidence 789999999985 567777788888888874 5544322 1112345688899999999999955 5554
Q ss_pred Ee------------------e--ccCCccceeecCCCCceeeeccc
Q 010784 466 FR------------------D--FSNATCPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 466 ~w------------------~--~~~~~~~~~s~~~d~~~~~w~~~ 491 (501)
++ . +.+....++.|..||++-.+++.
T Consensus 248 ~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 248 LFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 44 3 34566677889999999988875
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=3.4e-16 Score=134.19 Aligned_cols=236 Identities=14% Similarity=0.169 Sum_probs=177.6
Q ss_pred CceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC--eEE
Q 010784 207 GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS--KVR 284 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg--~v~ 284 (501)
..+..+.| +.+...|..|+.||. +++......+ +. ........|.-+-|+ ..+++..+.+. .++
T Consensus 6 ~ti~~~~~----Nqd~~~lsvGs~~Gy-k~~~~~~~~k-----~~-~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lk 71 (391)
T KOG2110|consen 6 PTINFIGF----NQDSTLLSVGSKDGY-KIFSCSPFEK-----CF-SKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLK 71 (391)
T ss_pred cceeeeee----ccceeEEEccCCCce-eEEecCchHH-----hh-cccCCCeEEEEeecc---cceeEEEecCCCceEE
Confidence 45666667 478888889998875 7888776542 11 111122233333443 34555555443 488
Q ss_pred EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc---CCCcEEEEEEcCCCcEEE
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI---CKPILHSFSIMPSKSLIC 361 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~ 361 (501)
+++++....+- ....+..+.++..+.+.+++.-...|++||+++.+.+.++.. +...+.++++++.+.+++
T Consensus 72 v~~~Kk~~~IC------e~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA 145 (391)
T KOG2110|consen 72 VVHFKKKTTIC------EIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA 145 (391)
T ss_pred EEEcccCceEE------EEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence 88888764332 235677888999999999999888999999999999887764 344566666666777888
Q ss_pred EEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc-EEEEeCCCcccccccccCCCCC
Q 010784 362 TGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR-INIWETDTGMLANSLLCNYPEE 436 (501)
Q Consensus 362 ~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~ 436 (501)
--+ ..+ |.+||..+-+. +..+..|.+.+-+++|+++ .++|++|..|+ |||+.+.+|+.+..|+.+.
T Consensus 146 yp~s~t~GdV~l~d~~nl~~------v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--- 216 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINLQP------VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--- 216 (391)
T ss_pred ecCCCCCceEEEEEccccee------eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---
Confidence 655 344 99999998554 4889999999999999999 99999999987 6999999999999997543
Q ss_pred CCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 437 ADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 437 ~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
....|.+++|+||+++|++.| +.++|+++.++...
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS--~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASS--NTETVHIFKLEKVS 251 (391)
T ss_pred eeeEEEEEEECCCCCeEEEec--CCCeEEEEEecccc
Confidence 146789999999999999998 77999999976533
No 194
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.1e-17 Score=145.33 Aligned_cols=286 Identities=17% Similarity=0.213 Sum_probs=206.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeee-ccCCCCceEEEEeeecCCC
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRC-FKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~-~~~h~~~v~~l~~s~~~~~ 220 (501)
.+...|.+|.+.|+.|.|+. .|..|++|+.|..|.+|| .+..... ..+|...|....|.| ..
T Consensus 133 ~l~~kL~~H~GcVntV~FN~-------------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP--~s 197 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQ-------------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP--FS 197 (559)
T ss_pred hhhhcccCCCCccceeeecc-------------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccC--CC
Confidence 45567889999999999998 899999999999999999 5554444 457988888888864 34
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
+...+++++.||.|++=.+...+. ..-...+..|.++|..++.-|.....|.+++.|+.+.-+|+++........+
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~---~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c- 273 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGY---VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC- 273 (559)
T ss_pred CCcCceeccccCceeeeeeccccc---eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee-
Confidence 567899999999999988765442 1224456779999999999998899999999999999999998754322211
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC---cEEEEEEcCCC-cEEEEEcCCc-EEEEecCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP---ILHSFSIMPSK-SLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~v~~v~~~~~~-~~l~~~~~d~-i~iwd~~~ 375 (501)
-..+.. ..+.++..|.. ..+++|+.+. +++||.+.
T Consensus 274 ----------------------------------------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 274 ----------------------------------------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred ----------------------------------------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence 111122 45678888864 4888999888 99999987
Q ss_pred CCCCCCCCCcccccCc------ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcc------------cccc-cccCCC
Q 010784 376 SQDAVKPQPMAELDGH------VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGM------------LANS-LLCNYP 434 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h------~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~------------~~~~-~~~~~~ 434 (501)
.........+..+..| .-.|++++++.+ .++++- .|-.|+++.-.-+. .... +++|..
T Consensus 314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN 392 (559)
T KOG1334|consen 314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN 392 (559)
T ss_pred hhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccccCCCCCCCcchhhccchhhccccc
Confidence 5543212223333322 346999999966 888875 78889999543221 1222 443332
Q ss_pred CCCCcceeeeEe-eccccEEEEeecCCCceEEEeeccCCc---------------------cceeecCCCCceeeecccC
Q 010784 435 EEADISTGCSAM-AVSGCRIVTASYGEPGLLQFRDFSNAT---------------------CPVLKHEVQNDSKFWGPQC 492 (501)
Q Consensus 435 ~~~~~~v~~~~~-s~~g~~l~s~~~d~~g~i~~w~~~~~~---------------------~~~~s~~~d~~~~~w~~~~ 492 (501)
...|.++.| -|...|+++|+ +-|.|.+|+-..++ ..+++.+-|..||||.+..
T Consensus 393 ---~~TVKgVNFfGPrsEyVvSGS--DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 393 ---SRTVKGVNFFGPRSEYVVSGS--DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ---ccccceeeeccCccceEEecC--ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 233666654 58889999999 77999999944322 2356888999999999864
Q ss_pred CC
Q 010784 493 YS 494 (501)
Q Consensus 493 ~~ 494 (501)
.+
T Consensus 468 ~e 469 (559)
T KOG1334|consen 468 AE 469 (559)
T ss_pred cc
Confidence 43
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1.5e-16 Score=150.71 Aligned_cols=267 Identities=13% Similarity=0.135 Sum_probs=188.7
Q ss_pred hhccccCCee-eEEEecCCCCceEEeeC-CcEEEeecCCeeeEEEEeccccccc-----ceecccCCcceeEEEeeccCc
Q 010784 94 LQFKFVDPLD-VCFYSVAKPHDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYY-----RATLSDHKARITCMRLFPLHE 166 (501)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~-----~~~~~~h~~~V~~~~~~~~~~ 166 (501)
..|....+.. ...+..+.+|.|+.|+| +..++|.|..+|.|-+||+..+... ......|..+|+.+.|...
T Consensus 225 ~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~-- 302 (555)
T KOG1587|consen 225 LVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN-- 302 (555)
T ss_pred EEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc--
Confidence 3455555533 34455677799999997 4567778889999999999875331 1223468999999999872
Q ss_pred CcccccCCCCcCcEEEEeeCCCceEEecCCce--------eeecc------CCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 167 TSLFRSEPQRTENVLVTSSCDHSIRLWWKGSC--------QRCFK------GHNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~------~h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
+.+.-|++++.||.|..|++... ..... .-...+++++|.+ .+...++.|+.+|
T Consensus 303 ---------~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~---~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 303 ---------EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP---TDPNHFIVGTEEG 370 (555)
T ss_pred ---------CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc---CCCceEEEEcCCc
Confidence 13466999999999999972111 11111 1234688999973 5567899999999
Q ss_pred cEEEEeccCCCcc--ccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 233 TVRLWSLSSSGKR--GQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 233 ~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
.|..=+....... ...+....+..|.++|+.+.++|-....+++++ |.+|++|......
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~------------------ 431 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA------------------ 431 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC------------------
Confidence 9877333322210 011124456678999999999987666777776 8999999876221
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL 388 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 388 (501)
.++..+..+...+++++|||. ...|+++..++ |.+||+..... .++.+.
T Consensus 432 -------------------------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----~Pv~s~ 482 (555)
T KOG1587|consen 432 -------------------------SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----EPVLSQ 482 (555)
T ss_pred -------------------------CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----CCcccc
Confidence 112233445667999999997 56777777777 99999987663 455666
Q ss_pred cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 389 DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 389 ~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
..+....+.+.|++. +++++|...|++++|++..
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 656677788889997 9999999999999999964
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=1.9e-16 Score=133.12 Aligned_cols=261 Identities=14% Similarity=0.106 Sum_probs=189.8
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccc--cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSE--SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
+..-..+|+|.+|++|+..+|.+...+.+.||..... .+..++++.|...|++|+|+| ..+.|++
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-------------~snrIvt 72 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-------------KSNRIVT 72 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-------------CCCceeE
Confidence 3445678999999999999999999999999998764 357889999999999999999 7899999
Q ss_pred eeCCCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC
Q 010784 184 SSCDHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 184 ~~~dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
++.|..-+||. +-+....+..+....+++.|+ |.++.|++|+.-..|.||-++.... =+...+.-+.+.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws----P~enkFAVgSgar~isVcy~E~ENd--WWVsKhikkPir 146 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS----PKENKFAVGSGARLISVCYYEQEND--WWVSKHIKKPIR 146 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeec----CcCceEEeccCccEEEEEEEecccc--eehhhhhCCccc
Confidence 99999999996 233445566789999999998 8899999999999999999887542 111123445677
Q ss_pred CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV 338 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 338 (501)
..|+++.|+| ++-++++|+.|+..+|+..--..... . +...+.. .+ +.-++.+
T Consensus 147 Stv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vde-------k-pap~pWg----sk--------------~PFG~lm 199 (361)
T KOG1523|consen 147 STVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDE-------K-PAPTPWG----SK--------------MPFGQLM 199 (361)
T ss_pred cceeeeeccC-CcceecccccCcceeEEEEeeecccc-------C-CCCCCCc----cC--------------CcHHHHH
Confidence 8899999998 77899999999999999753221100 0 0000000 00 0012333
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
..+....+.+..+.|+|+|..|+-.+.|. +.+-|...+... +..+....-+..++.|-.+ .++++| .|..=.
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~-----v~~~~~~~lP~ls~~~ise~~vv~ag-~~c~P~ 273 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER-----VQSVATAQLPLLSVSWISENSVVAAG-YDCGPV 273 (361)
T ss_pred HhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh-----ccchhhccCCceeeEeecCCceeecC-CCCCce
Confidence 34434578899999999999999999888 999998876422 2333333466777777666 555554 664333
Q ss_pred EE
Q 010784 417 IW 418 (501)
Q Consensus 417 iw 418 (501)
++
T Consensus 274 lf 275 (361)
T KOG1523|consen 274 LF 275 (361)
T ss_pred EE
Confidence 33
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.3e-14 Score=124.73 Aligned_cols=219 Identities=14% Similarity=0.171 Sum_probs=157.2
Q ss_pred cCcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC--cEEEEeccCCCccccccce
Q 010784 177 TENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA--TVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~ 251 (501)
+...|..|+.|| .++++ .+++-... .....|.-+-|+ ..++|..+.+. .+++.+++.... +
T Consensus 16 d~~~lsvGs~~G-yk~~~~~~~~k~~~~~-~~~~~IvEmLFS------SSLvaiV~~~qpr~Lkv~~~Kk~~~------I 81 (391)
T KOG2110|consen 16 DSTLLSVGSKDG-YKIFSCSPFEKCFSKD-TEGVSIVEMLFS------SSLVAIVSIKQPRKLKVVHFKKKTT------I 81 (391)
T ss_pred ceeEEEccCCCc-eeEEecCchHHhhccc-CCCeEEEEeecc------cceeEEEecCCCceEEEEEcccCce------E
Confidence 788899999988 46776 22221111 123345566664 34555555443 488888887652 3
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-----CCc
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-----GSS 326 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 326 (501)
..+. ...+|.++.++ .+.|+++=.+. |+|||+++.+.+..+.... .......+++.+....+++- .+.
T Consensus 82 Ce~~-fpt~IL~VrmN---r~RLvV~Lee~-IyIydI~~MklLhTI~t~~--~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN---RKRLVVCLEES-IYIYDIKDMKLLHTIETTP--PNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEe-cCCceEEEEEc---cceEEEEEccc-EEEEecccceeehhhhccC--CCccceEeeccCCCCceEEecCCCCCce
Confidence 3332 45678888886 33566665544 9999999987655433221 22233556677776666663 248
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCc--ccCeEEEEecC
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGH--VGSVTQLHMDP 402 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~ 402 (501)
|.+||..+.+.+..+..|++.+.+++|+++|.+||++++.| ||++.+.+++.+ .+|+.- ...|.+++|+|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl------~eFRRG~~~~~IySL~Fs~ 228 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL------YEFRRGTYPVSIYSLSFSP 228 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe------eeeeCCceeeEEEEEEECC
Confidence 99999999999999999999999999999999999999766 999999998766 555422 34689999999
Q ss_pred C-eEEEEecCCCcEEEEeCCC
Q 010784 403 Y-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 403 ~-~~l~~gs~dg~i~iwd~~~ 422 (501)
+ .+|++.|..++|++|.++.
T Consensus 229 ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 229 DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCeEEEecCCCeEEEEEecc
Confidence 9 9999989999999999864
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=5.8e-15 Score=136.99 Aligned_cols=283 Identities=13% Similarity=0.136 Sum_probs=172.4
Q ss_pred EeecCCeeeEEEEecccccc--cceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-eCCCceEEec-C--Cce
Q 010784 125 STQGSSIQNIKIDNFLSESY--YRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-SCDHSIRLWW-K--GSC 198 (501)
Q Consensus 125 ~~~g~~d~~i~vw~~~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~vwd-~--~~~ 198 (501)
.++...++.|.+|++.+..+ .+..+. +.+....++++| ++++|+++ ..++.|.+|+ . +..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-------------d~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-------------DKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-------------CCCEEEEEECCCCcEEEEEECCCCce
Confidence 34456689999999964222 444443 345677889998 78887665 4578899997 2 222
Q ss_pred --eeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 199 --QRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 199 --~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
+.... ..+....++|+ ++++++++++. ++.|.+|++++.... ......+. +......++++|+....++
T Consensus 71 ~~~~~~~-~~~~p~~i~~~----~~g~~l~v~~~~~~~v~v~~~~~~g~~--~~~~~~~~-~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 71 TFAAESP-LPGSPTHISTD----HQGRFLFSASYNANCVSVSPLDKDGIP--VAPIQIIE-GLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred EEeeeec-CCCCceEEEEC----CCCCEEEEEEcCCCeEEEEEECCCCCC--CCceeecc-CCCcccEeEeCCCCCEEEE
Confidence 22222 23355678886 88998888764 889999999753320 01122222 2234566788984444445
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP 355 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~ 355 (501)
+...++.|.+||+.+...+.... ....... .......+.|+|
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~-------------------------------------~~~~~~~-~g~~p~~~~~~p 184 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQE-------------------------------------PAEVTTV-EGAGPRHMVFHP 184 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccC-------------------------------------CCceecC-CCCCCceEEECC
Confidence 66677999999997632111000 0000011 123356789999
Q ss_pred CCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccccC------cccCeEEEEecCC-eEEEEe-cCCCcEEEEeCCCccc
Q 010784 356 SKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDG------HVGSVTQLHMDPY-KIVTGG-RDDLRINIWETDTGML 425 (501)
Q Consensus 356 ~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~~~-~~l~~g-s~dg~i~iwd~~~~~~ 425 (501)
+|++++++.. ++ |.+|++...... .+.+..+.. +......+.++|+ +++.++ ..++.|.+|++.+...
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGE--IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCC--EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC
Confidence 9999988875 55 999999742111 111222211 1123346889999 555554 4578999999965432
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
..++..+... ......+.|+|||++|+++.. .++.|.+|+++..
T Consensus 263 ~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~~ 306 (330)
T PRK11028 263 VLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDGE 306 (330)
T ss_pred eEEEeEEEec--cccCCceEECCCCCEEEEEEc-cCCcEEEEEEcCC
Confidence 2222211111 123457899999999999875 4799999998643
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=7.7e-16 Score=150.97 Aligned_cols=299 Identities=14% Similarity=0.106 Sum_probs=193.7
Q ss_pred hhccccCCeeeEEEecCCCCceEEeeCCc-EEEeecCCeeeEEEEecccc------cccceecccCCcceeEEEeeccCc
Q 010784 94 LQFKFVDPLDVCFYSVAKPHDHILLDNND-IFSTQGSSIQNIKIDNFLSE------SYYRATLSDHKARITCMRLFPLHE 166 (501)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~g~~d~~i~vw~~~~~------~~~~~~~~~h~~~V~~~~~~~~~~ 166 (501)
..|+....+.+.++.|...+..++.++.. .++++|+.||+|++|+...- .+...++......+.++...+
T Consensus 1032 ~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--- 1108 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--- 1108 (1431)
T ss_pred CCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc---
Confidence 34667677778888888889999998766 99999999999999997642 122223333456788888887
Q ss_pred CcccccCCCCcCcEEEEeeCCCceEEecCCc---------eeeeccC-CCCceEEE-EeeecCCCCCC-EEEEeeCCCcE
Q 010784 167 TSLFRSEPQRTENVLVTSSCDHSIRLWWKGS---------CQRCFKG-HNGPVSTL-SDKLLGDGSGK-ILASGGEDATV 234 (501)
Q Consensus 167 ~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~-h~~~v~~l-~~s~~~~~~~~-~l~sg~~dg~i 234 (501)
.++.+|.++.||.|++.+.+. +.+.... ..+.+.+| +|. ...+. .++.+...+.|
T Consensus 1109 ----------~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~---~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1109 ----------NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT---AIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred ----------CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccc---ccccceeEEEEEeccce
Confidence 789999999999999986111 1111222 22334444 332 23344 78888889999
Q ss_pred EEEeccCCCccccccceee--ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee
Q 010784 235 RLWSLSSSGKRGQQALKAT--LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM 312 (501)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (501)
..||.++... ... .....+.|++++.+| .++.++.|+..|.+.+||++=+.++.+...... ..+..+
T Consensus 1176 v~~D~r~~~~------~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~----~~i~~v 1244 (1431)
T KOG1240|consen 1176 VSWDTRMRHD------AWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR----APIRHV 1244 (1431)
T ss_pred EEecchhhhh------HHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCccc----CCcceE
Confidence 9999988653 222 233467899999998 678999999999999999998776554433222 222222
Q ss_pred ec---CC-CeEEEEeC----CcEEEEEcCCCceEeeeccC-----------------CCc--EEEEEEcCCCcEEEEEcC
Q 010784 313 KC---HE-SMLYIASG----SSVVTIDLRTMQKVMTPAIC-----------------KPI--LHSFSIMPSKSLICTGGI 365 (501)
Q Consensus 313 ~~---~~-~~~~~~~~----~~i~~~d~~~~~~~~~~~~~-----------------~~~--v~~v~~~~~~~~l~~~~~ 365 (501)
.. .+ +...++++ +.+.+|++.++.....+... ... .....+...+.++.+|+.
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs 1324 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS 1324 (1431)
T ss_pred EeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC
Confidence 11 12 12223322 27999999988665444322 011 111222223456666766
Q ss_pred Cc-EEEEecCCCCCCC-----------------------C---------------------------CCCcccccCcccC
Q 010784 366 GK-AMTWDIRRSQDAV-----------------------K---------------------------PQPMAELDGHVGS 394 (501)
Q Consensus 366 d~-i~iwd~~~~~~~~-----------------------~---------------------------~~~~~~~~~h~~~ 394 (501)
|. ||.||....+... . ..+...-..|..+
T Consensus 1325 d~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~ 1404 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP 1404 (1431)
T ss_pred ccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch
Confidence 66 9999987643220 0 0000111246778
Q ss_pred eEEEEecCC--eEEEEecCCCcEEEEe
Q 010784 395 VTQLHMDPY--KIVTGGRDDLRINIWE 419 (501)
Q Consensus 395 v~~l~~~~~--~~l~~gs~dg~i~iwd 419 (501)
|+++++... .++++++.||.|+||.
T Consensus 1405 Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhccCccEEEEecCCCeeeecC
Confidence 898887665 7899999999999994
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=3.7e-16 Score=131.44 Aligned_cols=214 Identities=16% Similarity=0.169 Sum_probs=167.6
Q ss_pred ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC
Q 010784 202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS 281 (501)
Q Consensus 202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg 281 (501)
+..-..+|+|.+|+ +++..++.+..+..|.||.....+. ++...++..|...|++|.|+| ..+.|++++.|.
T Consensus 6 ~~~~~~pitchAwn----~drt~iAv~~~~~evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap-~snrIvtcs~dr 77 (361)
T KOG1523|consen 6 FHRLLEPITCHAWN----SDRTQIAVSPNNHEVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDR 77 (361)
T ss_pred eeeccCceeeeeec----CCCceEEeccCCceEEEEEecCCCC---ceeceehhhhCcceeEEeecC-CCCceeEccCCC
Confidence 33346799999996 8999999999999999999887652 446888999999999999998 778999999999
Q ss_pred eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE
Q 010784 282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC 361 (501)
Q Consensus 282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 361 (501)
.-++|....+. +.++...+..++...+++.|+|.++.|+
T Consensus 78 nayVw~~~~~~-----------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFA 116 (361)
T KOG1523|consen 78 NAYVWTQPSGG-----------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFA 116 (361)
T ss_pred CccccccCCCC-----------------------------------------eeccceeEEEeccceeeEeecCcCceEE
Confidence 99999984331 1123334455788999999999999999
Q ss_pred EEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC-----C------------
Q 010784 362 TGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD-----T------------ 422 (501)
Q Consensus 362 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~-----~------------ 422 (501)
+|+... |.||-+.....= ....+.-+.+...|+++.|+|+ -++++||.|+..+||..- +
T Consensus 117 VgSgar~isVcy~E~ENdW--WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~P 194 (361)
T KOG1523|consen 117 VGSGARLISVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMP 194 (361)
T ss_pred eccCccEEEEEEEecccce--ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCc
Confidence 999998 999887754321 1111233456788999999999 888999999999999752 1
Q ss_pred -cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 423 -GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 423 -~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
|+++..+ ....+.+..+.|+|+|..|+-.+ +|+.+.+-|...+.
T Consensus 195 FG~lm~E~-----~~~ggwvh~v~fs~sG~~lawv~--Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 195 FGQLMSEA-----SSSGGWVHGVLFSPSGNRLAWVG--HDSTVSFVDAAGPS 239 (361)
T ss_pred HHHHHHhh-----ccCCCceeeeEeCCCCCEeeEec--CCCceEEeecCCCc
Confidence 2333333 23467899999999999999999 77999998866554
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=5e-17 Score=143.12 Aligned_cols=289 Identities=10% Similarity=0.127 Sum_probs=218.9
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
-+...+.++.+|.+++.|+..|.+-.+|+.++ ++...+. -...|.++.|.. +.++||++- ...+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LH-------------neq~~AVAQ-K~y~ 193 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLH-------------NEQFFAVAQ-KKYV 193 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhc-------------chHHHHhhh-hceE
Confidence 34788999999999999999999999999984 5555553 346799999987 566666665 6789
Q ss_pred EEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 191 RLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 191 ~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
.||| .|..++.++.|. .|..+.|. |.--+|++++..|.++.-|+.+++ .+..+....+.+..++-+|
T Consensus 194 yvYD~~GtElHClk~~~-~v~rLeFL----PyHfLL~~~~~~G~L~Y~DVS~Gk------lVa~~~t~~G~~~vm~qNP- 261 (545)
T KOG1272|consen 194 YVYDNNGTELHCLKRHI-RVARLEFL----PYHFLLVAASEAGFLKYQDVSTGK------LVASIRTGAGRTDVMKQNP- 261 (545)
T ss_pred EEecCCCcEEeehhhcC-chhhhccc----chhheeeecccCCceEEEeechhh------hhHHHHccCCccchhhcCC-
Confidence 9999 899999998664 68899997 566688999999999999999998 4778888888888899988
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEE
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILH 349 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 349 (501)
-+..+-+|...|+|.+|.....+++ ..+..|.++|.
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePL--------------------------------------------vKiLcH~g~V~ 297 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPL--------------------------------------------VKILCHRGPVS 297 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchH--------------------------------------------HHHHhcCCCcc
Confidence 4568889999999999998776543 33445899999
Q ss_pred EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeC-CC--ccc
Q 010784 350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWET-DT--GML 425 (501)
Q Consensus 350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~-~~--~~~ 425 (501)
++++.++|+|++|.+-|. ++|||+++...+ .++.. ..+...+++|...++|.+ ....|.||.= .. +..
T Consensus 298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql------~t~~t-p~~a~~ls~SqkglLA~~-~G~~v~iw~d~~~~s~~~ 369 (545)
T KOG1272|consen 298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL------HTYRT-PHPASNLSLSQKGLLALS-YGDHVQIWKDALKGSGHG 369 (545)
T ss_pred eEEECCCCcEEeecccccceeEeeecccccc------ceeec-CCCccccccccccceeee-cCCeeeeehhhhcCCCCC
Confidence 999999999999999999 999999997644 44443 346778888888777775 5567999953 22 122
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceeecCCCCceeeecccCC
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQCY 493 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~~~ 493 (501)
-.-+..|. -...|..+.|.|-...|-.|.. .|.- ..++.|+.+-..--|.-+.+
T Consensus 370 ~~pYm~H~---~~~~V~~l~FcP~EDvLGIGH~--~G~t---------silVPGsGePN~Ds~e~nPf 423 (545)
T KOG1272|consen 370 ETPYMNHR---CGGPVEDLRFCPYEDVLGIGHA--GGIT---------SILVPGSGEPNYDSLEDNPF 423 (545)
T ss_pred Ccchhhhc---cCcccccceeccHHHeeecccc--CCce---------eEeccCCCCCCcchhccCcc
Confidence 22222222 2348999999999888888763 2422 23456666655555544444
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=4.4e-16 Score=139.65 Aligned_cols=255 Identities=16% Similarity=0.172 Sum_probs=177.1
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEee-e---cCCCCCCE
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDK-L---LGDGSGKI 224 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s-~---~~~~~~~~ 224 (501)
.|...|.|+.|+. +.. +...+.|..+.+|+ .......+.-....|....+- + ........
T Consensus 12 r~~e~vc~v~w~~-------------~ee-i~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-------------NEE-IYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDT 77 (737)
T ss_pred ccceeEEeecccc-------------cce-EEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcce
Confidence 6778889999987 444 44445566777775 332222222112222111110 0 00122357
Q ss_pred EEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 225 LASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
|+.++.||.+.+.+-... ....+..|.+.+.+-.|+| ++.-|+++++||.|++|.-. |..
T Consensus 78 ~~i~s~DGkf~il~k~~r-------VE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrs-GML----------- 137 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSAR-------VERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRS-GML----------- 137 (737)
T ss_pred EEEEcCCceEEEecccch-------hhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEecc-chH-----------
Confidence 888899999998775543 4567889999999999998 78889999999999999843 321
Q ss_pred cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCC
Q 010784 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQP 384 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~ 384 (501)
..++.....+|+|++|.|+.+-++-+..+.+.|=.+.....+
T Consensus 138 ---------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~----- 179 (737)
T KOG1524|consen 138 ---------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKI----- 179 (737)
T ss_pred ---------------------------------HHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccce-----
Confidence 112233467899999999977666665555666666654433
Q ss_pred cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----
Q 010784 385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG---- 459 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---- 459 (501)
...+.|.+-|.++.|++. .++++|+.|-..+|||.. |+.+.+- ..|..+|++++|.|+ +.++.+++.
T Consensus 180 -i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S-----~~~ey~ITSva~npd-~~~~v~S~nt~R~ 251 (737)
T KOG1524|consen 180 -IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTS-----AAEEYAITSVAFNPE-KDYLLWSYNTARF 251 (737)
T ss_pred -eEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccC-----Chhccceeeeeeccc-cceeeeeeeeeee
Confidence 678899999999999999 999999999999999964 6666665 567889999999999 777777764
Q ss_pred ---CCceEEEeeccCCccceeecCCCCce
Q 010784 460 ---EPGLLQFRDFSNATCPVLKHEVQNDS 485 (501)
Q Consensus 460 ---~~g~i~~w~~~~~~~~~~s~~~d~~~ 485 (501)
.-|.|.-..++.++..++.|...|.+
T Consensus 252 ~~p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 252 SSPRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred cCCCccceEEEEEcCCCceeeccccCceE
Confidence 34555555566666666666666554
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=9.3e-16 Score=148.17 Aligned_cols=254 Identities=19% Similarity=0.205 Sum_probs=169.7
Q ss_pred CCceEEee--CCcEEEeecCCeeeEEEEecccc----cccceeccc---C----CcceeEEEeeccCcCcccccCCCCcC
Q 010784 112 PHDHILLD--NNDIFSTQGSSIQNIKIDNFLSE----SYYRATLSD---H----KARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 112 ~i~~~~~~--~~~~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~---h----~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
.|+.+.+= .|..++.+|+.||.|+||+--.. .+++..+.+ + .+.=.-++|.. ..
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-------------~~ 1177 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-------------QS 1177 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-------------hC
Confidence 37777774 57788999999999999974321 122222221 1 11112334443 55
Q ss_pred cEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
.+|+++|.-..|+||| ...+...+. +....|+++.-. -..|+.+++|..||.|++||.+.... ...+...+
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~---~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R 1251 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD---LVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYR 1251 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc---ccCCceEEEeecCCceEEeecccCCc---cccceeec
Confidence 5566666589999999 333333332 445567777643 24589999999999999999987542 12567778
Q ss_pred CCCCc--eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 256 GHEKP--IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 256 ~~~~~--v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
.|+.. |..+.+.+.+-..|++|+.||.|++||++.........
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~----------------------------------- 1296 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT----------------------------------- 1296 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----------------------------------
Confidence 88887 99999987555579999999999999999752111000
Q ss_pred CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecC
Q 010784 334 TMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRD 411 (501)
Q Consensus 334 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~ 411 (501)
+..-....+..+++..+++...+|+|+...|+||++...+... .+.-..+ ....+.+.|++|+|. -++|+|+.
T Consensus 1297 ----iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~-~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1297 ----IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNI-IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred ----eeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcc-cccCcccccCcCCCcceeeecchhHhhhhccC
Confidence 0000001235899999999999999999449999987543210 0000111 112456899999999 88888899
Q ss_pred CCcEEEEeCCCcc
Q 010784 412 DLRINIWETDTGM 424 (501)
Q Consensus 412 dg~i~iwd~~~~~ 424 (501)
|..|.||.....+
T Consensus 1372 Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1372 DSTVSIYSCEKPR 1384 (1387)
T ss_pred CceEEEeecCCcC
Confidence 9999999876543
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.6e-16 Score=135.82 Aligned_cols=203 Identities=17% Similarity=0.173 Sum_probs=150.1
Q ss_pred EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784 210 STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS 289 (501)
Q Consensus 210 ~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~ 289 (501)
.+++|+ .+|..+++|+.||++|+|+..... .+.....|.+.|.++.|+| +++.|++.+.| ..+||+.+
T Consensus 148 k~vaf~----~~gs~latgg~dg~lRv~~~Ps~~------t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFN----GDGSKLATGGTDGTLRVWEWPSML------TILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEc----CCCCEeeeccccceEEEEecCcch------hhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEec
Confidence 578885 899999999999999999977765 3667778999999999998 89999999999 89999999
Q ss_pred CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC---cE--EEEEc
Q 010784 290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK---SL--ICTGG 364 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~---~~--l~~~~ 364 (501)
++..+..... .........+.|+.++ .+ ++...
T Consensus 216 ~g~~~a~~t~------------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~ 253 (398)
T KOG0771|consen 216 TGAALARKTP------------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQF 253 (398)
T ss_pred cCchhhhcCC------------------------------------------cccchhhhhceecccCCCceEEEEEecC
Confidence 9844332110 0012234456666665 22 22333
Q ss_pred CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784 365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG 442 (501)
Q Consensus 365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 442 (501)
..+ |+.||+...+.- ..-...+...-...|++++++++ ++++.|+.||.|-|++..+.+.++-++ ..|...|+
T Consensus 254 ~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk----~aH~~~VT 328 (398)
T KOG0771|consen 254 PGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK----EAHLGFVT 328 (398)
T ss_pred CCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh----hhheeeee
Confidence 444 888777654321 00011222222457999999999 999999999999999999988887775 67889999
Q ss_pred eeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.+.|+||.+++++.+ .+..+.+..+.-+.
T Consensus 329 ~ltF~Pdsr~~~svS--s~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 329 GLTFSPDSRYLASVS--SDNEAAVTKLAVDK 357 (398)
T ss_pred eEEEcCCcCcccccc--cCCceeEEEEeecc
Confidence 999999999999988 44777777766533
No 205
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=2.3e-16 Score=136.79 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=157.3
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc---cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCe
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG---QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSK 282 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~ 282 (501)
..+|..+.|. ....+.++||+.|..|++|.++...... .......+..|...|+++.|+| ++.+|++|+.+|.
T Consensus 13 ~~pv~s~dfq---~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQ---KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGE 88 (434)
T ss_pred CCceEEEEec---cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCce
Confidence 4578888886 2333499999999999999998765433 5566778889999999999998 8899999999999
Q ss_pred EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784 283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT 362 (501)
Q Consensus 283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 362 (501)
|.+|-...-... .+ .. .... +-+.....+.+.+|...|+.++|+|++.++++
T Consensus 89 v~lWk~~~~~~~---~~--------d~-e~~~----------------~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 89 VFLWKQGDVRIF---DA--------DT-EADL----------------NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred EEEEEecCcCCc---cc--------cc-hhhh----------------CccceEEEEEecccccchhhhhccCCCceeee
Confidence 999976641110 00 00 0000 00112234567789999999999999999999
Q ss_pred EcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccc-----c---C
Q 010784 363 GGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLL-----C---N 432 (501)
Q Consensus 363 ~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~-----~---~ 432 (501)
++-|+ +++||+..++.. ..+..|...|..++|+|. +++++-+.|...+.+.+...+.+.... . +
T Consensus 141 ~s~dns~~l~Dv~~G~l~------~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~ 214 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLL------AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFN 214 (434)
T ss_pred eeccceEEEEEeccceeE------eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccC
Confidence 99988 999999998765 888999999999999999 999988889878887776544333221 0 0
Q ss_pred CCC------CC----CcceeeeEeeccccEEEEee
Q 010784 433 YPE------EA----DISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 433 ~~~------~~----~~~v~~~~~s~~g~~l~s~~ 457 (501)
... .| ..-...++|+|||.+|++..
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 000 01 11234578999999999854
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.9e-15 Score=133.65 Aligned_cols=285 Identities=14% Similarity=0.126 Sum_probs=194.8
Q ss_pred cCCCCceEEeeCCcEEE-eecCCeeeEEEEecccccccceecccCCc--ceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 109 VAKPHDHILLDNNDIFS-TQGSSIQNIKIDNFLSESYYRATLSDHKA--RITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~-~~g~~d~~i~vw~~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
++..-+.|.++|||.|+ |+|.+...|++||+.. +.-.+..|.+ .|.-.-.+. |-..++--.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan---LSLKFERhlDae~V~feiLsD-------------D~SK~v~L~ 113 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN---LSLKFERHLDAEVVDFEILSD-------------DYSKSVFLQ 113 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccc---ceeeeeecccccceeEEEecc-------------chhhheEee
Confidence 34446889999999987 6888999999999873 3334455543 233333333 444555556
Q ss_pred CCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 186 CDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 186 ~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
.|.+|.+-..+..-..++. ...-..|+++ .+.-.+++ ++....|.-++++.|. .+..+....+.++++.
T Consensus 114 ~DR~IefHak~G~hy~~RI-P~~GRDm~y~---~~scDly~-~gsg~evYRlNLEqGr------fL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 114 NDRTIEFHAKYGRHYRTRI-PKFGRDMKYH---KPSCDLYL-VGSGSEVYRLNLEQGR------FLNPFETDSGELNVVS 182 (703)
T ss_pred cCceeeehhhcCeeeeeec-CcCCcccccc---CCCccEEE-eecCcceEEEEccccc------cccccccccccceeee
Confidence 6888877652222222211 1223455554 23334444 4445678889999887 4777887889999999
Q ss_pred EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC
Q 010784 266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK 345 (501)
Q Consensus 266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 345 (501)
+++ -..+|++|+.+|.|..||.++...+......... .. .......
T Consensus 183 in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v--~s-------------------------------~pg~~~~ 228 (703)
T KOG2321|consen 183 INE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV--NS-------------------------------HPGGDAA 228 (703)
T ss_pred ecC-ccceEEecccCceEEEecchhhhhheeeeccccc--CC-------------------------------Ccccccc
Confidence 997 5668999999999999999987654332211110 00 0000113
Q ss_pred CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCC
Q 010784 346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~ 421 (501)
..|+++.|+.+|-.+++|+..+ +.|||+++.+.+ +..-.+..-+|..+.|.+. ..+++. ....++|||-.
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDEC 302 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----eecccCCccceeeecccccCCCceEEec-chHHhhhcccc
Confidence 4499999999999999999888 999999998754 2233334568899999765 666664 77789999999
Q ss_pred CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 422 TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
+|+....+. ....++.+|+-|++.++++|- +++.+..|=
T Consensus 303 ~Gk~~asiE------pt~~lND~C~~p~sGm~f~An--e~~~m~~yy 341 (703)
T KOG2321|consen 303 TGKPMASIE------PTSDLNDFCFVPGSGMFFTAN--ESSKMHTYY 341 (703)
T ss_pred cCCceeecc------ccCCcCceeeecCCceEEEec--CCCcceeEE
Confidence 999998883 355699999999999999997 556555443
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=5.7e-16 Score=141.68 Aligned_cols=234 Identities=18% Similarity=0.191 Sum_probs=163.2
Q ss_pred CcEEEe--ecCCeeeEEEEecccccccce-ecc--cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-
Q 010784 121 NDIFST--QGSSIQNIKIDNFLSESYYRA-TLS--DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW- 194 (501)
Q Consensus 121 ~~~~~~--~g~~d~~i~vw~~~~~~~~~~-~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd- 194 (501)
+..++| -.+.-|.|-|+++...+++-. .+. -....|+.++|.|. |...|+.++.||.|++|.
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF------------D~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF------------DDERLAVATDDGQINLWRL 657 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC------------ChHHeeecccCceEEEEEe
Confidence 344444 445578999999875433222 121 13457999999997 889999999999999995
Q ss_pred --------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 195 --------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 195 --------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
.......+.+|...|+++.|+| -..+.|++++.|.+|++||+.++. ....+.+|++.|..++|
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHP---LAadvLa~asyd~Ti~lWDl~~~~------~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHP---LAADVLAVASYDSTIELWDLANAK------LYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecc---hhhhHhhhhhccceeeeeehhhhh------hhheeccCcCceeEEEE
Confidence 2234566789999999999995 556799999999999999999987 47788999999999999
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-C
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-K 345 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~ 345 (501)
+| +++.+++.+.||+|++|+.+.++... +.-.+. .
T Consensus 729 Sp-dGr~~AtVcKDg~~rVy~Prs~e~pv-------------------------------------------~Eg~gpvg 764 (1012)
T KOG1445|consen 729 SP-DGRRIATVCKDGTLRVYEPRSREQPV-------------------------------------------YEGKGPVG 764 (1012)
T ss_pred CC-CCcceeeeecCceEEEeCCCCCCCcc-------------------------------------------ccCCCCcc
Confidence 98 89999999999999999998764311 000000 1
Q ss_pred CcEEEEEEcCCCcEEEEEcCC----c-EEEEecCCCCCCCCCCCcccccCccc-CeEEEEecCC--eEEEEecCCCcEEE
Q 010784 346 PILHSFSIMPSKSLICTGGIG----K-AMTWDIRRSQDAVKPQPMAELDGHVG-SVTQLHMDPY--KIVTGGRDDLRINI 417 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d----~-i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~--~~l~~gs~dg~i~i 417 (501)
..--.|.|.-+|+++++.+-| + |.+||..+-.. .++.+..-... .+.--.++++ .++++|-.|..|.+
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~----~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~ 840 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL----RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNM 840 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC----CcceeeeecccCccccccccCCCceEEEecCCCceEEE
Confidence 122345566688887776633 3 77787765331 12222111000 0111123445 78888889999999
Q ss_pred EeCCCc
Q 010784 418 WETDTG 423 (501)
Q Consensus 418 wd~~~~ 423 (501)
|.+-..
T Consensus 841 yEv~~e 846 (1012)
T KOG1445|consen 841 YEVIYE 846 (1012)
T ss_pred EEecCC
Confidence 998643
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=7.7e-16 Score=126.01 Aligned_cols=252 Identities=17% Similarity=0.194 Sum_probs=165.3
Q ss_pred CCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCc--CcEEEEeeCC
Q 010784 110 AKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRT--ENVLVTSSCD 187 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d 187 (501)
...|+.+..-|+ ..+.+-+.|..+.+|++.-+ .....|.=.++++.|++.. ....+. ...++.-+..
T Consensus 56 ~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s----~~i~i~Si~~nslgFCrfS------l~~~~k~~eqll~yp~rg 124 (323)
T KOG0322|consen 56 RLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS----AFISIHSIVVNSLGFCRFS------LVKKPKNSEQLLEYPSRG 124 (323)
T ss_pred cceeeceeecCC-cchhhcCCCceEEEEEccCc----ceEEEeeeeccccccccce------eccCCCcchhheecCCcc
Confidence 344777777776 55667778999999998753 2334566678888887621 000011 1112211110
Q ss_pred C-ceEEecCCceeee------ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc----cccccceeeccC
Q 010784 188 H-SIRLWWKGSCQRC------FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK----RGQQALKATLYG 256 (501)
Q Consensus 188 g-~i~vwd~~~~~~~------~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~~~ 256 (501)
- .+.+-|-+...+. -.+..+.+.|..+- ......-++++|.++|.+.+||+.++.. +...+.......
T Consensus 125 sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 125 SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred cchhhhhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 0 0122221111111 11345667777652 2223344677889999999999998743 112234555677
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
|..+|.++.+.+ ....=++|+.+..+..|++...... .+
T Consensus 204 h~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gs----------------------------------------lq 242 (323)
T KOG0322|consen 204 HKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGS----------------------------------------LQ 242 (323)
T ss_pred ccCcceeeeech-hhcCCcCCCccccceeeeeccccCc----------------------------------------cc
Confidence 999999999986 3344567788888888987643110 00
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR 414 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~ 414 (501)
...........|..+.+-||++.+|+++.|+ ||+|..++... +..++.|...|++++|+|+ .++|++|.|++
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p------LAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP------LAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc------hhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 1111222345678899999999999999888 99999999654 5999999999999999999 99999999999
Q ss_pred EEEEeC
Q 010784 415 INIWET 420 (501)
Q Consensus 415 i~iwd~ 420 (501)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.3e-15 Score=142.84 Aligned_cols=232 Identities=11% Similarity=0.063 Sum_probs=157.2
Q ss_pred CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec--CCc--eeee
Q 010784 129 SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW--KGS--CQRC 201 (501)
Q Consensus 129 ~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd--~~~--~~~~ 201 (501)
..+..+.+||.... ..+.+..|...+...+|+| +|+.|+.++.+ ..|++|| ++. .+..
T Consensus 181 ~~~~~i~i~d~dg~--~~~~lt~~~~~v~~p~wSP-------------DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~ 245 (429)
T PRK01742 181 SQPYEVRVADYDGF--NQFIVNRSSQPLMSPAWSP-------------DGSKLAYVSFENKKSQLVVHDLRSGARKVVAS 245 (429)
T ss_pred CceEEEEEECCCCC--CceEeccCCCccccceEcC-------------CCCEEEEEEecCCCcEEEEEeCCCCceEEEec
Confidence 34689999998743 3566778888999999999 88989887654 3699999 332 2333
Q ss_pred ccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEE--eccCCCccccccceeeccCCCCceeEEEEeecCCeEEE-EE
Q 010784 202 FKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLW--SLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV-TI 277 (501)
Q Consensus 202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~ 277 (501)
+.+| ...++|+ |+|+.|+.++ .+|.+.|| |+.++. ...+..+...+....|+| ++..|+ ++
T Consensus 246 ~~g~---~~~~~wS----PDG~~La~~~~~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSp-DG~~i~f~s 310 (429)
T PRK01742 246 FRGH---NGAPAFS----PDGSRLAFASSKDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSP-DGQSILFTS 310 (429)
T ss_pred CCCc---cCceeEC----CCCCEEEEEEecCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECC-CCCEEEEEE
Confidence 4443 3467887 8998887764 68877666 444443 345556677788899998 555554 44
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK 357 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~ 357 (501)
..+|...+|++...... . ..+ .+.. ....|+|+|
T Consensus 311 ~~~g~~~I~~~~~~~~~------------------------------------------~-~~l-~~~~--~~~~~SpDG 344 (429)
T PRK01742 311 DRSGSPQVYRMSASGGG------------------------------------------A-SLV-GGRG--YSAQISADG 344 (429)
T ss_pred CCCCCceEEEEECCCCC------------------------------------------e-EEe-cCCC--CCccCCCCC
Confidence 46788888876532110 0 001 1222 356799999
Q ss_pred cEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC--CcccccccccCCC
Q 010784 358 SLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD--TGMLANSLLCNYP 434 (501)
Q Consensus 358 ~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~--~~~~~~~~~~~~~ 434 (501)
+.++..+.+.+.+||+.+++.. .....+ ....+.|+|+ ++++.++.++.+.+|++. +|+.+..+
T Consensus 345 ~~ia~~~~~~i~~~Dl~~g~~~------~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l----- 411 (429)
T PRK01742 345 KTLVMINGDNVVKQDLTSGSTE------VLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL----- 411 (429)
T ss_pred CEEEEEcCCCEEEEECCCCCeE------EecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-----
Confidence 9998888777777999886532 111111 2346789999 778877789988888763 57778888
Q ss_pred CCCCcceeeeEeecc
Q 010784 435 EEADISTGCSAMAVS 449 (501)
Q Consensus 435 ~~~~~~v~~~~~s~~ 449 (501)
..|.+.+...+|+|-
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 345567788899874
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=6.9e-14 Score=117.91 Aligned_cols=239 Identities=14% Similarity=0.168 Sum_probs=169.5
Q ss_pred ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE-EEeCC------
Q 010784 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV-TISKD------ 280 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-s~s~d------ 280 (501)
...+++|. .|...++.|..+ -.+||+.+.-++ ......+.+.+.-+.... ..++++ .|+.+
T Consensus 7 ~~lsvs~N----QD~ScFava~~~-Gfriyn~~P~ke------~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 7 KTLSVSFN----QDHSCFAVATDT-GFRIYNCDPFKE------SASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPP 74 (346)
T ss_pred ceeEEEEc----cCCceEEEEecC-ceEEEecCchhh------hhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCC
Confidence 44558884 777777777665 479999886442 111111222222222221 223443 34333
Q ss_pred CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC-CCceEeeeccC--CCcEEEEEEcCCC
Q 010784 281 SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR-TMQKVMTPAIC--KPILHSFSIMPSK 357 (501)
Q Consensus 281 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~--~~~v~~v~~~~~~ 357 (501)
..|.|||-... .+...+.....+.++....+.++++..+.|.+|... +.+.++.+... ...+.+++-+.+.
T Consensus 75 NkviIWDD~k~------~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKE------RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccC------cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 46999994444 444555778888999999999999999999999987 55666555532 2334444444456
Q ss_pred cEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc-EEEEeCCCcccccccccCC
Q 010784 358 SLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR-INIWETDTGMLANSLLCNY 433 (501)
Q Consensus 358 ~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~ 433 (501)
.+||.-+ .-+ |.|-|+...+. .+-..+..|...|.+++.+-+ .++|++|..|+ |||||..+|+++..+..+.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 6777666 344 99999987653 123677899999999999999 99999999997 7999999999999997543
Q ss_pred CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
....|.+++|||+..+|+++| +.|+++++.+....
T Consensus 225 ---d~A~iy~iaFSp~~s~LavsS--dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 ---DRADIYCIAFSPNSSWLAVSS--DKGTLHIFSLRDTE 259 (346)
T ss_pred ---chheEEEEEeCCCccEEEEEc--CCCeEEEEEeecCC
Confidence 246799999999999999999 88999999987644
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.4e-14 Score=125.39 Aligned_cols=268 Identities=16% Similarity=0.179 Sum_probs=190.6
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee------eeccCCCCceEEEEeeecCCCCC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ------RCFKGHNGPVSTLSDKLLGDGSG 222 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~------~~~~~h~~~v~~l~~s~~~~~~~ 222 (501)
.-...|..++|.-++ +.+.+...+.|..+.... ...+. ......+++|..++. ..
T Consensus 53 ~~~~ris~l~~~~d~-----------~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~------~d 115 (412)
T KOG3881|consen 53 DELDRISSLLFGVDG-----------ETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL------AD 115 (412)
T ss_pred chhhhhhhheeecCC-----------ceeEeeccccCcccccccccCCccccccccccccccccccccchhh------cC
Confidence 345678888887643 456666666777777665 22222 233456778888875 34
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC--CeEEEEECCCCccccceecc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD--SKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~ 300 (501)
..|++|-.+|.+.+|....+... ......+..+ ..+..+.-++....++++|+.. ..+.+||+++.+.+.+..++
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h--ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH--SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc--cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 57788889999999999855421 0012333333 4566777777677888889999 89999999998766554444
Q ss_pred cce----ecCCCceeeecCCC---eEEEEeC--CcEEEEEcCCCce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EE
Q 010784 301 GMT----SVPGVPVDMKCHES---MLYIASG--SSVVTIDLRTMQK-VMTPAICKPILHSFSIMPSKSLICTGGIGK-AM 369 (501)
Q Consensus 301 ~~~----~~~~~~~~~~~~~~---~~~~~~~--~~i~~~d~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~ 369 (501)
... ..+..+..+.|-+. ..+++.. +++++||.+.++. +..+.-.+.+++++...|+++++++|..-+ +.
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 332 23334444444433 3444433 4899999997754 567777789999999999999999999888 99
Q ss_pred EEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 370 TWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 370 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
.||++.++.. ...+++..+.|.+|..+|. +++++++-|..|+|+|+.+.+++..... .+.++.+.+.+
T Consensus 273 ~FD~r~~kl~-----g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv------Ks~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLL-----GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV------KSRLTFILLRD 341 (412)
T ss_pred eecccCceee-----ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh------hccccEEEecC
Confidence 9999998755 3458888999999999999 9999999999999999999777766532 34566666655
Q ss_pred c
Q 010784 449 S 449 (501)
Q Consensus 449 ~ 449 (501)
+
T Consensus 342 ~ 342 (412)
T KOG3881|consen 342 D 342 (412)
T ss_pred C
Confidence 4
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.2e-15 Score=130.62 Aligned_cols=202 Identities=14% Similarity=0.154 Sum_probs=147.6
Q ss_pred ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe
Q 010784 114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW 193 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw 193 (501)
-+++++.+|..+++|+.||.++||++.+ ...+.....|...|.+++|+| ||++|++-+.| ..+||
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~-------------dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSP-------------DGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCC-------------CCcEEEEecCC-ceEEE
Confidence 6899999999999999999999999877 477777889999999999999 89999999999 99999
Q ss_pred c--CCceeeecc--CCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 194 W--KGSCQRCFK--GHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 194 d--~~~~~~~~~--~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
+ ++..+.... ........+.|+..+..+.-++ +....-+.|+.|++.........+..+.+ .....|.+++++.
T Consensus 213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD 291 (398)
T ss_pred EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC
Confidence 8 665554443 2334456677762111111122 23334566777776543321111112222 2344689999996
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
++++++.|+.||.|.+++..+.+... ..-+.|...|
T Consensus 292 -dGkf~AlGT~dGsVai~~~~~lq~~~-------------------------------------------~vk~aH~~~V 327 (398)
T KOG0771|consen 292 -DGKFLALGTMDGSVAIYDAKSLQRLQ-------------------------------------------YVKEAHLGFV 327 (398)
T ss_pred -CCcEEEEeccCCcEEEEEeceeeeeE-------------------------------------------eehhhheeee
Confidence 89999999999999999988764322 2334688999
Q ss_pred EEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 349 HSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
+.+.|+|+.+++++.+.+. +.+..+.-
T Consensus 328 T~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 328 TGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999988777 88877665
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=8.5e-13 Score=111.44 Aligned_cols=231 Identities=12% Similarity=0.117 Sum_probs=153.5
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc--ceeEEEeeccCcCcccccCCCCcCcEEE-EeeCC--
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA--RITCMRLFPLHETSLFRSEPQRTENVLV-TSSCD-- 187 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d-- 187 (501)
.-+++|+.|...+++|..+| .+||+.+.- +.......+.+ .+..+-|- .++|+ .|+.+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~-ke~~~r~~~~~G~~~veMLfR---------------~N~laLVGGg~~p 70 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPF-KESASRQFIDGGFKIVEMLFR---------------SNYLALVGGGSRP 70 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCch-hhhhhhccccCchhhhhHhhh---------------hceEEEecCCCCC
Confidence 34489999999999887655 788987752 22222222222 23333332 34444 34333
Q ss_pred ----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC--C
Q 010784 188 ----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE--K 259 (501)
Q Consensus 188 ----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~ 259 (501)
..|.||| ..+++.++. ...+|.++.+. ...+++.- .+.|.||......+ .+..+.... .
T Consensus 71 ky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~------r~riVvvl-~~~I~VytF~~n~k-----~l~~~et~~NPk 137 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLR------RDRIVVVL-ENKIYVYTFPDNPK-----LLHVIETRSNPK 137 (346)
T ss_pred CCCCceEEEEecccCcEEEEEE-eccceeeEEEc------CCeEEEEe-cCeEEEEEcCCChh-----heeeeecccCCC
Confidence 4699999 667777775 57899999984 34555554 56899999986543 344333222 2
Q ss_pred ceeEEEEeecC-CeEEEE-EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 260 PIKLMSVAGHK-SFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 260 ~v~~l~~~~~~-~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
... +..|.. ..+|+. |-.-|.|.|-|+...+. ..
T Consensus 138 GlC--~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------------------------------------~~ 173 (346)
T KOG2111|consen 138 GLC--SLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------------------------------------------NA 173 (346)
T ss_pred ceE--eecCCCCceEEEcCCCccceEEEEEhhhcCc------------------------------------------CC
Confidence 233 233322 223333 33457777777765422 01
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccC--cccCeEEEEecCC-eEEEEecCC
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDG--HVGSVTQLHMDPY-KIVTGGRDD 412 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~-~~l~~gs~d 412 (501)
...+..|...|.+++++-+|.++|++|..+ |||||..+++.+ .++.. ....|++++|+|+ .+++++|..
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l------~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL------QELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe------eeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 245678999999999999999999999655 999999998765 55542 2457999999999 999999999
Q ss_pred CcEEEEeCCCc
Q 010784 413 LRINIWETDTG 423 (501)
Q Consensus 413 g~i~iwd~~~~ 423 (501)
|+++||.++..
T Consensus 248 gTlHiF~l~~~ 258 (346)
T KOG2111|consen 248 GTLHIFSLRDT 258 (346)
T ss_pred CeEEEEEeecC
Confidence 99999998753
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.7e-13 Score=116.31 Aligned_cols=284 Identities=15% Similarity=0.178 Sum_probs=182.2
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
+.-++|++--..+|++..|-+|++|+-.. .....++. -...|+|++|-|. .+..|+.|+..| |.
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPl------------saselavgCr~g-Ic 165 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPL------------SASELAVGCRAG-IC 165 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccC------------Ccceeeeeecce-eE
Confidence 56678888777788999999999999775 44444443 3456999999995 456777777655 89
Q ss_pred Eec---C---Cce----------eeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeec
Q 010784 192 LWW---K---GSC----------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 192 vwd---~---~~~----------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
+|. + +.. +....+| .+|++|.|. ++|..+++++. |..|.|||.+++.. +...
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn----~dgt~l~tAS~gsssi~iWdpdtg~~------~pL~ 234 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWN----EDGTILVTASFGSSSIMIWDPDTGQK------IPLI 234 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEc----CCCCEEeecccCcceEEEEcCCCCCc------cccc
Confidence 995 1 111 1122345 689999995 89999998875 56899999999874 2222
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
....+.+.-+.|+| ++.+|++++-|+..++|+........
T Consensus 235 ~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e--------------------------------------- 274 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE--------------------------------------- 274 (445)
T ss_pred ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec---------------------------------------
Confidence 34456788899999 78899999999999999655431100
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCC---------CCcccc------cC---cccCeE
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKP---------QPMAEL------DG---HVGSVT 396 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~---------~~~~~~------~~---h~~~v~ 396 (501)
......+.|...+|+|+|.+|+-...+.-++|.+...+..... .++..+ .+ -.+.+.
T Consensus 275 -----rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 275 -----RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred -----ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence 0111245788888888888877776666555555432221000 011111 11 146789
Q ss_pred EEEecCC-eEEEEecCCC--------cEEEEeCCCcccccccccCCCCCCCcceeeeEeec---cccEEEEeecCCCceE
Q 010784 397 QLHMDPY-KIVTGGRDDL--------RINIWETDTGMLANSLLCNYPEEADISTGCSAMAV---SGCRIVTASYGEPGLL 464 (501)
Q Consensus 397 ~l~~~~~-~~l~~gs~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~s~~~d~~g~i 464 (501)
+++|+|. .++|..-..+ .|.+||.+..-...-..++... ...-..++|+| +|.+|..+- ..|.+
T Consensus 350 ~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~--ge~P~~IsF~pl~n~g~lLsiaW--sTGri 425 (445)
T KOG2139|consen 350 CLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG--GEYPAYISFGPLKNEGRLLSIAW--STGRI 425 (445)
T ss_pred eeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc--CCCCceEEeeecccCCcEEEEEe--ccCce
Confidence 9999999 6666642322 3667776643332222222211 11234566766 567777776 66888
Q ss_pred EEeeccC
Q 010784 465 QFRDFSN 471 (501)
Q Consensus 465 ~~w~~~~ 471 (501)
.-|.+.-
T Consensus 426 q~ypl~f 432 (445)
T KOG2139|consen 426 QRYPLTF 432 (445)
T ss_pred EeeeeEE
Confidence 8887653
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=1.6e-14 Score=129.80 Aligned_cols=197 Identities=11% Similarity=0.096 Sum_probs=139.6
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccce
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 297 (501)
+.+--+..|-.-|.|.+.|....+. ..+.... -....|+++.|.|.+...++.+-.+|.+++||..-.-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~----sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~--- 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEV----SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA--- 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHH----HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC---
Confidence 5666788888889999988766321 0001111 123689999999988889999999999999987322110
Q ss_pred ecccceecCCCceeeecCCCeEEEEeCCcEEEEEc-CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 298 CCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDL-RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
....+..-..++... |..+.- .+..++..+...++.|+..+|+|||++||+.+.|+ +||||..+
T Consensus 256 --------t~p~~~~~k~~~~f~------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 256 --------TAPSYQALKDGDQFA------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred --------CCCcccccCCCCeeE------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH
Confidence 000111111111111 111111 11134444444567899999999999999999999 99999998
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
.+.+ ..++..-+...|++|+|| ++|++|++|.-|.||.+...+++..= .+|.++|..++|.|
T Consensus 322 ~eLl------g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG-----qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 322 QELL------GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG-----QGHKSWVSVVAFDP 384 (636)
T ss_pred HHHH------HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-----cccccceeeEeecc
Confidence 6554 555656678999999999 99999999999999999998888777 68999999999984
No 216
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.62 E-value=1.4e-13 Score=117.24 Aligned_cols=249 Identities=15% Similarity=0.254 Sum_probs=179.6
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCceeeec-cCCCCceEEEEeeecC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQRCF-KGHNGPVSTLSDKLLG 218 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~~~~-~~h~~~v~~l~~s~~~ 218 (501)
..+++.++||.+.|++...-| -..-+++.+.|.+++||- .++.-..+ .....+++++.+.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~-------------~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~--- 77 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIP-------------KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV--- 77 (404)
T ss_pred hhhhhhhcCchhhhhhheecc-------------CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee---
Confidence 456778899999999998888 567899999999999994 33332222 2345678889886
Q ss_pred CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 219 DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 219 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
.+...|+.|-.+|++.-+.+...-. +.........|...|..+-|+- ....+++.+.|..+.---.+.+..+...
T Consensus 78 -~e~~~L~vg~~ngtvtefs~sedfn--km~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y- 152 (404)
T KOG1409|consen 78 -SESRRLYVGQDNGTVTEFALSEDFN--KMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGY- 152 (404)
T ss_pred -ccceEEEEEEecceEEEEEhhhhhh--hcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccce-
Confidence 7888999999999999887654221 1224566678999999999985 6778889998887655445555433221
Q ss_pred cccceecCCCceeeecCCCeEEEEe-CCcEEE--EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIAS-GSSVVT--IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR 374 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~--~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~ 374 (501)
........+.++-...++.. .+.+.. ........+.++.+|.+.+.+++|.+...++.+|..|. +.+||+-
T Consensus 153 -----~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 153 -----NFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred -----EeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 11112222222222222221 123333 34456677889999999999999999999999999999 9999998
Q ss_pred CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 375 RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 375 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
-.+-. ..++.+|...|..+..-+. +.+.+++.||.|.+||...
T Consensus 228 g~~g~-----~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 GRKGT-----AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcce-----eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 65432 4778899999999988887 6666667999999999864
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=2.2e-12 Score=119.26 Aligned_cols=313 Identities=13% Similarity=0.116 Sum_probs=193.0
Q ss_pred CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC 198 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~ 198 (501)
...++++-..++.+.|.|..+ .+.+..+....+.-..+.|+| ||+++++++.||.|.++| +++.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~-------------Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGAT-NKVVARIPTGGAPHAGLKFSP-------------DGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT--------------SSEEEEEETTSEEEEEETTSSSE
T ss_pred ccEEEEEecCCCEEEEEECCC-CeEEEEEcCCCCceeEEEecC-------------CCCEEEEEcCCCeEEEEECCcccE
Confidence 345556777789999999998 478888876655545577888 899999999999999999 7778
Q ss_pred eeeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeeccC-------CCCceeEEEEeecC
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATLYG-------HEKPIKLMSVAGHK 270 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~ 270 (501)
+.+++... .-.+++++ ++|++++++. .++.+.++|..+.+. +..+.. ....+..|..++..
T Consensus 71 v~~i~~G~-~~~~i~~s----~DG~~~~v~n~~~~~v~v~D~~tle~------v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 71 VATIKVGG-NPRGIAVS----PDGKYVYVANYEPGTVSVIDAETLEP------VKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp EEEEE-SS-EEEEEEE------TTTEEEEEEEETTEEEEEETTT--E------EEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred EEEEecCC-CcceEEEc----CCCCEEEEEecCCCceeEeccccccc------eeecccccccccccCCCceeEEecCCC
Confidence 88887544 45788987 8999988775 689999999998763 444432 34467777777744
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEe--CCcEEEEEcCCCceEeeecc---
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIAS--GSSVVTIDLRTMQKVMTPAI--- 343 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~i~~~d~~~~~~~~~~~~--- 343 (501)
..++++--..+.|.+.|....+... .........+....++++. ++++. .+.+.++|.++++.+..+..
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~----~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~ 215 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLK----VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK 215 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEE----EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred CEEEEEEccCCeEEEEEeccccccc----eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc
Confidence 4455555555888888887764321 1122344455556666654 33332 24899999999887765432
Q ss_pred -CCCcEEEEEEcCC-CcEEEEE----------cCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe-
Q 010784 344 -CKPILHSFSIMPS-KSLICTG----------GIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG- 409 (501)
Q Consensus 344 -~~~~v~~v~~~~~-~~~l~~~----------~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g- 409 (501)
|...+..+- +|. |...+++ +.+.+.+||..+.+. +.++....++ ..+..+|+ +.+...
T Consensus 216 p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv------v~~I~~~G~g-lFi~thP~s~~vwvd~ 287 (369)
T PF02239_consen 216 PHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV------VKTIPTQGGG-LFIKTHPDSRYVWVDT 287 (369)
T ss_dssp BEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE------EEEEE-SSSS---EE--TT-SEEEEE-
T ss_pred cccccccccc-CCCcceEEeeccccceecccccCCccccchhhcCeE------EEEEECCCCc-ceeecCCCCccEEeec
Confidence 344444432 332 2222222 233355566666443 4777765555 78888999 555544
Q ss_pred ---cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 410 ---RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 410 ---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
...+.|.++|.++.+.+.++... ....+..+.|++||+.+..+..+.++.|.++|-.+.+.
T Consensus 288 ~~~~~~~~v~viD~~tl~~~~~i~~~----~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 288 FLNPDADTVQVIDKKTLKVVKTITPG----PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp TT-SSHT-EEEEECCGTEEEE-HHHH----HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred cCCCCCceEEEEECcCcceeEEEecc----CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 55689999999999887777421 12348889999999998888887677999999877664
No 218
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.61 E-value=9.9e-13 Score=122.07 Aligned_cols=255 Identities=12% Similarity=0.104 Sum_probs=152.2
Q ss_pred cCCCCceEEeeCCcEEEeec-CCeeeEEEEeccccccc--ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 109 VAKPHDHILLDNNDIFSTQG-SSIQNIKIDNFLSESYY--RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g-~~d~~i~vw~~~~~~~~--~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
....+..++++|++++++++ ..++.|.+|++...... ..... ..+....++|+| +++++++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-------------~g~~l~v~~ 98 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-------------QGRFLFSAS 98 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-------------CCCEEEEEE
Confidence 34568899999999988655 45888999998632122 22221 233467888988 788777776
Q ss_pred C-CCceEEec-C--Cc---eeeeccCCCCceEEEEeeecCCCCCCEEEEe-eCCCcEEEEeccCCCcccc-ccceeeccC
Q 010784 186 C-DHSIRLWW-K--GS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASG-GEDATVRLWSLSSSGKRGQ-QALKATLYG 256 (501)
Q Consensus 186 ~-dg~i~vwd-~--~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~-~~~~~~~~~ 256 (501)
. ++.|.+|+ . +. .+..+. +.....+++++ +++++++++ ..++.|.+||+++...... .........
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~----p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID----PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC----CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 4 88999997 2 21 222222 23345677786 788887654 4569999999987432000 000011111
Q ss_pred CCCceeEEEEeecCCeEEEEEeC-CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISK-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
......+.|+| ++++++++.. ++.|.+|++....... ...... . ..
T Consensus 174 -g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~--~~~~~~---------------------------~--~~ 220 (330)
T PRK11028 174 -GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEI--ECVQTL---------------------------D--MM 220 (330)
T ss_pred -CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCE--EEEEEE---------------------------e--cC
Confidence 23456789998 6677766665 8999999997421000 000000 0 00
Q ss_pred ceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecC
Q 010784 336 QKVMTPAICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRD 411 (501)
Q Consensus 336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~ 411 (501)
..... +......+.++|++++++++.. ++ |.+|++...... .+.+..... ......+.++|+ .++++...
T Consensus 221 --p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~--~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 221 --PADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV--LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred --CCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--EEEeEEEec-cccCCceEECCCCCEEEEEEcc
Confidence 00000 1223446889999999998864 45 999999654321 111122211 124567899999 55555556
Q ss_pred CCcEEEEeCC
Q 010784 412 DLRINIWETD 421 (501)
Q Consensus 412 dg~i~iwd~~ 421 (501)
+++|.+|++.
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999874
No 219
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-13 Score=116.83 Aligned_cols=315 Identities=17% Similarity=0.163 Sum_probs=203.7
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEecccccc----cceecccCC------------cceeEEEeeccCcCcccccCC
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESY----YRATLSDHK------------ARITCMRLFPLHETSLFRSEP 174 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~----~~~~~~~h~------------~~V~~~~~~~~~~~~~~~~~~ 174 (501)
.-|+++.|+..|.+||+|..+|.|.++.-....+ ....++.|. ..|+.+.|.+++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~--------- 96 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG--------- 96 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---------
Confidence 3489999999999999999999999997553222 344455553 578999999855
Q ss_pred CCcCcEEEEeeCCCceEEec---CCcee----------------------------------ee-ccCCCCceEEEEeee
Q 010784 175 QRTENVLVTSSCDHSIRLWW---KGSCQ----------------------------------RC-FKGHNGPVSTLSDKL 216 (501)
Q Consensus 175 ~~~~~~l~s~~~dg~i~vwd---~~~~~----------------------------------~~-~~~h~~~v~~l~~s~ 216 (501)
+...++....|.+|++|. .+... +. -.+|+-.|+++.+.
T Consensus 97 --n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N- 173 (433)
T KOG1354|consen 97 --NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN- 173 (433)
T ss_pred --CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-
Confidence 667888888899999995 11000 01 12578889999985
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-----CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-----EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~ 291 (501)
.+++.++++ .|=.|.+|+++-..+.. -+..++.+ +.-|++..|+|...+.++-.+..|+|++-|++..
T Consensus 174 ---sD~Et~lSA-DdLRINLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 174 ---SDKETFLSA-DDLRINLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred ---CccceEeec-cceeeeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 788888876 57789999987644311 12233333 3457888999988889999999999999999954
Q ss_pred ccccceecccc-----------eecCCCceeeecCCCeEEEEeCC--cEEEEEc-CCCceEeeeccCC------------
Q 010784 292 SAVRSSCCVGM-----------TSVPGVPVDMKCHESMLYIASGS--SVVTIDL-RTMQKVMTPAICK------------ 345 (501)
Q Consensus 292 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~-~~~~~~~~~~~~~------------ 345 (501)
..-........ ...-..+..+.++.++.++.+.+ ++++||+ ...+++.+++.|.
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 32111000000 02233455677888888887766 8999999 5556666666653
Q ss_pred CcE---EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccC--eEEEEecCCeEEEEecCCCcEEEEe
Q 010784 346 PIL---HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGS--VTQLHMDPYKIVTGGRDDLRINIWE 419 (501)
Q Consensus 346 ~~v---~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~l~~gs~dg~i~iwd 419 (501)
+.| ..++|+.++.++++|+... .++++...+... -.++...... ...+ ..-+.+.+++......+|-
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~-----d~tl~asr~~~~~~~~--~k~~~V~~~g~r~~~~~~v 399 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE-----DFTLEASRKNMKPRKV--LKLRLVSSSGKRKRDEISV 399 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCcce-----eecccccccCCccccc--ccceeeecCCCcccccccc
Confidence 222 3578999999999999888 999997665432 1222221111 1111 1114455544444422221
Q ss_pred CCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 420 TDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
- .+ ....-+...+|+|..+.||.+.. ..++++
T Consensus 400 d-------~l------df~kkilh~aWhp~en~ia~aat---nnlyif 431 (433)
T KOG1354|consen 400 D-------AL------DFRKKILHTAWHPKENSIAVAAT---NNLYIF 431 (433)
T ss_pred c-------hh------hhhhHHHhhccCCccceeeeeec---CceEEe
Confidence 0 01 01123455689999999988864 355554
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.1e-12 Score=119.19 Aligned_cols=312 Identities=13% Similarity=0.112 Sum_probs=197.7
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-----eC
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-----SC 186 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-----~~ 186 (501)
+.+..+++++|+++|.+.. ..++|++..++. .+.+.. ...++++.|+| -+++|.+= ..
T Consensus 36 ~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~-~~lt~~--~~~~~~L~fSP-------------~g~yL~T~e~~~i~~ 98 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDN-QVVKVFEIATLK-VVLCVE--LKKTYDLLFSP-------------KGNYLLTWEPWAIYG 98 (566)
T ss_pred cceeEEEcCCCcEEEEEcC-CeEEEEEccCCc-EEEEec--cceeeeeeecc-------------ccccccccccccccc
Confidence 3577888999999998764 678888887653 222222 22789999999 67777652 11
Q ss_pred C-----CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 187 D-----HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 187 d-----g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
+ -.+.+|+ ++.....+..-...-.+..|+ .+.. ++.--..+.+.+|++..... ..-+-|..
T Consensus 99 ~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs----~dEs-l~arlv~nev~f~~~~~f~~-------~~~kl~~~ 166 (566)
T KOG2315|consen 99 PKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFS----IDES-LAARLVSNEVQFYDLGSFKT-------IQHKLSVS 166 (566)
T ss_pred CCCCCCCceeeeeeccceehhheehhhhcCcccccc----cchh-hhhhhhcceEEEEecCCccc-------eeeeeecc
Confidence 2 3366888 422222232211122577775 4443 33333457899999987542 22334677
Q ss_pred ceeEEEEeecCC-eEEEE-----EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC---eEEEEeC------
Q 010784 260 PIKLMSVAGHKS-FLLVT-----ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES---MLYIASG------ 324 (501)
Q Consensus 260 ~v~~l~~~~~~~-~~l~s-----~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------ 324 (501)
.|+.+.++|... ..+++ .+.-+.|++|.......-....... -....-..+.++.. .+++++.
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks--FFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS--FFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc--ccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 889999998523 33333 3455679999876322111111111 12223334444432 2333321
Q ss_pred ------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCe
Q 010784 325 ------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSV 395 (501)
Q Consensus 325 ------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v 395 (501)
..+++++++.......+. ..++|.++.|+|+++-+++.. .=. +.|||++- .++..+. .++-
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-------~~v~df~--egpR 314 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-------KPVFDFP--EGPR 314 (566)
T ss_pred ccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-------CEeEeCC--CCCc
Confidence 157888887333333333 489999999999997766554 333 99999984 3445554 6788
Q ss_pred EEEEecCC-eEEEEec---CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEEe
Q 010784 396 TQLHMDPY-KIVTGGR---DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQFR 467 (501)
Q Consensus 396 ~~l~~~~~-~~l~~gs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~w 467 (501)
+++-|+|. ++++-++ .-|.|.|||+.+.+++..+. ...-+.+.|+|||+++++++.. -|+-++||
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 89999999 5555433 45889999999999998884 3345678999999999999864 46778999
Q ss_pred eccC
Q 010784 468 DFSN 471 (501)
Q Consensus 468 ~~~~ 471 (501)
++.-
T Consensus 388 hytG 391 (566)
T KOG2315|consen 388 HYTG 391 (566)
T ss_pred EecC
Confidence 9763
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=2.4e-13 Score=115.13 Aligned_cols=311 Identities=12% Similarity=0.063 Sum_probs=196.6
Q ss_pred eEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784 115 HILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd 194 (501)
-..|+|+|+++|+.+.- .+.|-|..+ .++.+.+.- -+.|.-+.|..+ ....|.....|+.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t-lq~~qlf~c-ldki~yieW~ad------------s~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET-LQLHQLFLC-LDKIVYIEWKAD------------SCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch-hhHHHHHHH-HHHhhheeeecc------------ceeeeeeeeccceEEEEE
Confidence 46799999999999865 667777766 344443322 467888889873 234566677899999999
Q ss_pred --CCceeeeccCCCCceEEEEeeecCCCCC-CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784 195 --KGSCQRCFKGHNGPVSTLSDKLLGDGSG-KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS 271 (501)
Q Consensus 195 --~~~~~~~~~~h~~~v~~l~~s~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 271 (501)
...-...+....+++.+++|| |+| .+|.+...+-.|.+|.+.+... ..+......+..++|+| ++
T Consensus 78 l~Qpew~ckIdeg~agls~~~WS----PdgrhiL~tseF~lriTVWSL~t~~~-------~~~~~pK~~~kg~~f~~-dg 145 (447)
T KOG4497|consen 78 LVQPEWYCKIDEGQAGLSSISWS----PDGRHILLTSEFDLRITVWSLNTQKG-------YLLPHPKTNVKGYAFHP-DG 145 (447)
T ss_pred eecceeEEEeccCCCcceeeeEC----CCcceEeeeecceeEEEEEEecccee-------EEecccccCceeEEECC-CC
Confidence 334445566778899999998 788 5666777899999999998652 33333344568899997 78
Q ss_pred eEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEE
Q 010784 272 FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHS 350 (501)
Q Consensus 272 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~ 350 (501)
++.+.++.....-.+++...+ ........ ...-....+.++|++..++ +||.--.-.+..+. -.-.+..
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~---~W~ll~~f~~dT~DltgieWsPdg~~la------Vwd~~Leykv~aYe-~~lG~k~ 215 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCK---AWILLKEFKLDTIDLTGIEWSPDGNWLA------VWDNVLEYKVYAYE-RGLGLKF 215 (447)
T ss_pred ceeeeeecccHHHHHHHHhhH---HHHHHHhcCCCcccccCceECCCCcEEE------Eecchhhheeeeee-eccceeE
Confidence 777777654221111111110 00111111 1111233455566554444 44432211211111 1356888
Q ss_pred EEEcCCCcEEEEEcCCc-EEEEecCCCCCCC-------------------------------------------------
Q 010784 351 FSIMPSKSLICTGGIGK-AMTWDIRRSQDAV------------------------------------------------- 380 (501)
Q Consensus 351 v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~------------------------------------------------- 380 (501)
++|+|.+++++.|+.|+ +|+.+--+.+...
T Consensus 216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 99999999999999998 8875532211100
Q ss_pred -----------CCCCcccccCcccCeEEEEecCC-eEEEEecCC---CcEEEEeCCCcccccccccCCCCCCCcceeeeE
Q 010784 381 -----------KPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD---LRINIWETDTGMLANSLLCNYPEEADISTGCSA 445 (501)
Q Consensus 381 -----------~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 445 (501)
+.++...+....-.+..++|+++ .++++- .| +.+-+||++..++...+. ...+|....
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr-nd~~PnalW~Wdlq~l~l~avLi------Qk~piraf~ 368 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR-NDKYPNALWLWDLQNLKLHAVLI------QKHPIRAFE 368 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee-cCCCCceEEEEechhhhhhhhhh------hccceeEEE
Confidence 00111111222335677899999 888875 44 458999999887776663 356799999
Q ss_pred eeccccEEEEeecCCCceEEEeeccC
Q 010784 446 MAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 446 ~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
|.|....|+.+. ...++++|..+-
T Consensus 369 WdP~~prL~vct--g~srLY~W~psg 392 (447)
T KOG4497|consen 369 WDPGRPRLVVCT--GKSRLYFWAPSG 392 (447)
T ss_pred eCCCCceEEEEc--CCceEEEEcCCC
Confidence 999998888877 447788887553
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.1e-13 Score=130.52 Aligned_cols=208 Identities=14% Similarity=0.100 Sum_probs=137.5
Q ss_pred CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+..|.+|| .+...+.+..|...+.+..|+ |+|+.|+.++.+ ..|.+||+.++.. ..+..+.+|. .
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wS----PDG~~la~~s~~~~~~~i~i~dl~tg~~----~~l~~~~g~~---~ 251 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWS----PDGSKLAYVSFENKKSQLVVHDLRSGAR----KVVASFRGHN---G 251 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEc----CCCCEEEEEEecCCCcEEEEEeCCCCce----EEEecCCCcc---C
Confidence 47899999 666667777888899999997 899999887654 3699999987652 1233344443 3
Q ss_pred EEEEeecCCeEEEEE-eCCCeEEEE--ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 263 LMSVAGHKSFLLVTI-SKDSKVRVW--DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~-s~dg~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.++|+| +++.|+.+ +.+|.+.|| |+.+++. .
T Consensus 252 ~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~---------------------------------------------~ 285 (429)
T PRK01742 252 APAFSP-DGSRLAFASSKDGVLNIYVMGANGGTP---------------------------------------------S 285 (429)
T ss_pred ceeECC-CCCEEEEEEecCCcEEEEEEECCCCCe---------------------------------------------E
Confidence 579998 66666654 467766555 4444321 1
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
.+..+...+.+..|+|||+.|+..+ .++ ..||++...... ...+ .+.. ....|+|+ +.++..+.++ +.
T Consensus 286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~ 356 (429)
T PRK01742 286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----ASLV-GGRG--YSAQISADGKTLVMINGDN-VV 356 (429)
T ss_pred eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EE
Confidence 2233455677899999999877665 445 888876543221 1112 2333 45789999 6666655554 66
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
+||+.+++...... . .....+.|+|||++|+.++ .++.+.+|.+
T Consensus 357 ~~Dl~~g~~~~lt~-----~--~~~~~~~~sPdG~~i~~~s--~~g~~~~l~~ 400 (429)
T PRK01742 357 KQDLTSGSTEVLSS-----T--FLDESPSISPNGIMIIYSS--TQGLGKVLQL 400 (429)
T ss_pred EEECCCCCeEEecC-----C--CCCCCceECCCCCEEEEEE--cCCCceEEEE
Confidence 69998886543221 1 1234678999999999998 4577777775
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=6.3e-12 Score=120.81 Aligned_cols=232 Identities=12% Similarity=0.046 Sum_probs=148.5
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
..|.++| .+...+.+..|...+.+.+|+ |+|+.|+..+. +..|.+||+.++.. ..+..+.+.+..
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wS----pDG~~lay~s~~~g~~~i~~~dl~~g~~-------~~l~~~~g~~~~ 250 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFS----PNRQEITYMSYANGRPRVYLLDLETGQR-------ELVGNFPGMTFA 250 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEEC----CCCCEEEEEEecCCCCEEEEEECCCCcE-------EEeecCCCcccC
Confidence 3688888 666667777888899999997 88998887653 46899999988752 344455666778
Q ss_pred EEEeecCCeEEEEEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 264 MSVAGHKSFLLVTISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
.+|+|++..++++.+.++. |.+||+.+++. ..+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---------------------------------------------~~L 285 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT---------------------------------------------TRL 285 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCce---------------------------------------------EEc
Confidence 8999844444556666655 66667765532 112
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC---C
Q 010784 342 AICKPILHSFSIMPSKSLICTGGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD---L 413 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d---g 413 (501)
..+........|+|||+.|+..++ + . |+++|+..++. ..+..+.+.+....|+|+ +.++..+.+ .
T Consensus 286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~ 358 (435)
T PRK05137 286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQF 358 (435)
T ss_pred cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-------EEeecCCCcccCeEECCCCCEEEEEEcCCCce
Confidence 223444567899999998887663 2 2 88888766432 233333455677889999 555543332 3
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC----ceEEEeeccCCccceeecCCCCceeeec
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP----GLLQFRDFSNATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~----g~i~~w~~~~~~~~~~s~~~d~~~~~w~ 489 (501)
.|.+||+.++. ...+. . ...+....|+|||++|+..+.+.. ..+++.++..+....++...+..-..|.
T Consensus 359 ~i~~~d~~~~~-~~~lt----~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Ws 431 (435)
T PRK05137 359 SIGVMKPDGSG-ERILT----S--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWS 431 (435)
T ss_pred EEEEEECCCCc-eEecc----C--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccC
Confidence 68888876543 33332 1 123667899999999887664221 3577778766555444433333344554
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.9e-14 Score=125.22 Aligned_cols=217 Identities=14% Similarity=0.141 Sum_probs=169.4
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
+|.+|+.|+.-|.|..+| ++.....+. -...|.++.|. .+.+++|++ ....+.|||-..-+ +..+
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~L----Hneq~~AVA-QK~y~yvYD~~GtE-------lHCl 206 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFL----HNEQFFAVA-QKKYVYVYDNNGTE-------LHCL 206 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhh----cchHHHHhh-hhceEEEecCCCcE-------Eeeh
Confidence 899999999999999999 666665554 45678888885 556666665 45689999976543 5666
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
+.| ..|..+.|.| ---+|++++..|.++.-|+.+|+.+..
T Consensus 207 k~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~-------------------------------------- 246 (545)
T KOG1272|consen 207 KRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS-------------------------------------- 246 (545)
T ss_pred hhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHH--------------------------------------
Confidence 654 4578899998 567889999999999999999876543
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD 412 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d 412 (501)
+....+.+..+.-+|-+..+-+|..++ |.+|...+.+ ++..+..|.++|.+|++++. +++++.+.|
T Consensus 247 ------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske------PLvKiLcH~g~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 247 ------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE------PLVKILCHRGPVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred ------HHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc------hHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence 223356677788888888899999888 9999998855 45888899999999999999 999988899
Q ss_pred CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 413 LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 413 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
..++|||+++...+.++.. ..+...++||..| +||.+-. ..|.+|.
T Consensus 315 r~~kIWDlR~~~ql~t~~t------p~~a~~ls~Sqkg-lLA~~~G---~~v~iw~ 360 (545)
T KOG1272|consen 315 RKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKG-LLALSYG---DHVQIWK 360 (545)
T ss_pred cceeEeeeccccccceeec------CCCcccccccccc-ceeeecC---Ceeeeeh
Confidence 9999999999887777732 2456677888766 4444432 5889996
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=6.8e-12 Score=106.47 Aligned_cols=307 Identities=12% Similarity=0.063 Sum_probs=188.3
Q ss_pred CceEEeeCCcEEEeecC-CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCce
Q 010784 113 HDHILLDNNDIFSTQGS-SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSI 190 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~-~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i 190 (501)
|..+.+.-+..++.++- .++.|.+|++... +-...+..-.+++.++.||| +| .+|.+...|-.|
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIdeg~agls~~~WSP-------------dgrhiL~tseF~lri 116 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDEGQAGLSSISWSP-------------DGRHILLTSEFDLRI 116 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEeccCCCcceeeeECC-------------CcceEeeeecceeEE
Confidence 55566666777777664 5789999998863 55566777788899999999 67 566777789999
Q ss_pred EEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC------------------------------------Cc
Q 010784 191 RLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED------------------------------------AT 233 (501)
Q Consensus 191 ~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d------------------------------------g~ 233 (501)
.||. ..+....++.....+..++|+ ++|++.+.++.- ..
T Consensus 117 TVWSL~t~~~~~~~~pK~~~kg~~f~----~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 117 TVWSLNTQKGYLLPHPKTNVKGYAFH----PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNW 192 (447)
T ss_pred EEEEeccceeEEecccccCceeEEEC----CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcE
Confidence 9998 333333334344556778886 788887766431 22
Q ss_pred EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecC-------
Q 010784 234 VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP------- 306 (501)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~------- 306 (501)
+.+||---.-+ +. ...-.-.+..++|+| .+++++.|+.|+.+++.+--+-+....+........+
T Consensus 193 laVwd~~Leyk------v~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 193 LAVWDNVLEYK------VY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred EEEecchhhhe------ee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 34444321110 11 111234678899998 6889999999999998776554432221111110000
Q ss_pred -------CCceeeecCCCeEEEEeCC-cEEEEEc-------CCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc---E
Q 010784 307 -------GVPVDMKCHESMLYIASGS-SVVTIDL-------RTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK---A 368 (501)
Q Consensus 307 -------~~~~~~~~~~~~~~~~~~~-~i~~~d~-------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---i 368 (501)
-..-++++.+...-..-.. .-.+|.. .+.++...+....-.+--++|++|..++++-.+.- +
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal 344 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL 344 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence 0001112222111100000 0011111 11111222222344577899999999999988654 9
Q ss_pred EEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEe
Q 010784 369 MTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAM 446 (501)
Q Consensus 369 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 446 (501)
-+||+++.+. ...-....+|....|+|. +++++ .....+++|...-...+..- ..+-.|..+.|
T Consensus 345 W~Wdlq~l~l-------~avLiQk~piraf~WdP~~prL~vc-tg~srLY~W~psg~~~V~vP------~~GF~i~~l~W 410 (447)
T KOG4497|consen 345 WLWDLQNLKL-------HAVLIQKHPIRAFEWDPGRPRLVVC-TGKSRLYFWAPSGPRVVGVP------KKGFNIQKLQW 410 (447)
T ss_pred EEEechhhhh-------hhhhhhccceeEEEeCCCCceEEEE-cCCceEEEEcCCCceEEecC------CCCceeeeEEe
Confidence 9999998654 333334678999999999 55554 45667999987654444333 23467999999
Q ss_pred eccccEEEEeecC
Q 010784 447 AVSGCRIVTASYG 459 (501)
Q Consensus 447 s~~g~~l~s~~~d 459 (501)
..+|..++..+.|
T Consensus 411 ~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 411 LQPGEFIVLCGKD 423 (447)
T ss_pred cCCCcEEEEEcCC
Confidence 9999999999854
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=3.8e-13 Score=121.17 Aligned_cols=197 Identities=17% Similarity=0.193 Sum_probs=136.2
Q ss_pred CCcEEEeecCCeeeEEEEecccccccceecc----cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC
Q 010784 120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLS----DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK 195 (501)
Q Consensus 120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~----~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~ 195 (501)
+++.-+..|-.-|.+.+.|... .+..+.+. -.+..|+|+.|-|. +...|+.+-.+|.+.++|.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg------------~~~~Fl~a~~sGnlyly~~ 249 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPG------------SDSLFLVAHASGNLYLYDK 249 (636)
T ss_pred CCCcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeC------------CCceEEEEEecCceEEeec
Confidence 6777788888888888888664 22222221 13478999999995 5677888888999999984
Q ss_pred CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
. +....+...|.+. +++..+... .|.-..... ++....--.+.|..++|+| ++.+|+
T Consensus 250 ~--------~~~~~t~p~~~~~--k~~~~f~i~-------t~ksk~~rN-----Pv~~w~~~~g~in~f~FS~-DG~~LA 306 (636)
T KOG2394|consen 250 E--------IVCGATAPSYQAL--KDGDQFAIL-------TSKSKKTRN-----PVARWHIGEGSINEFAFSP-DGKYLA 306 (636)
T ss_pred c--------ccccCCCCccccc--CCCCeeEEe-------eeeccccCC-----ccceeEeccccccceeEcC-CCceEE
Confidence 1 1112222222111 333343322 221111111 3444444455889999998 999999
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP 355 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~ 355 (501)
+.+.||.++|+|..+.+.+. .++..=+...|++|+|
T Consensus 307 ~VSqDGfLRvF~fdt~eLlg--------------------------------------------~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 307 TVSQDGFLRIFDFDTQELLG--------------------------------------------VMKSYFGGLLCVCWSP 342 (636)
T ss_pred EEecCceEEEeeccHHHHHH--------------------------------------------HHHhhccceEEEEEcC
Confidence 99999999999998875432 2222346789999999
Q ss_pred CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 356 SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 356 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
||++|++|++|- |.||.+...+.+ ..-++|..+|..++|+|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVV------ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVV------ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEE------EeccccccceeeEeecc
Confidence 999999999888 999999986554 78889999999999983
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=9.4e-12 Score=115.15 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=172.8
Q ss_pred ceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee-CCCceEE
Q 010784 114 DHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS-CDHSIRL 192 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~v 192 (501)
..+.+++||+++.+.+.|+.+.++|+.+. +.+.+++.-.+ -.++++++ ||++++++. .++.+.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G~~-~~~i~~s~-------------DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVGGN-PRGIAVSP-------------DGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-SSE-EEEEEE---------------TTTEEEEEEEETTEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecCCC-cceEEEcC-------------CCCEEEEEecCCCceeE
Confidence 44678999999988888999999999985 77777765444 57799999 889888775 5899999
Q ss_pred ec--CCceeeeccC-------CCCceEEEEeeecCCCCCCEEEEe-eCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 193 WW--KGSCQRCFKG-------HNGPVSTLSDKLLGDGSGKILASG-GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 193 wd--~~~~~~~~~~-------h~~~v~~l~~s~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+| +.+.++.+.. ....+..+..+ +....++.. -..+.|-+-|...... +............
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s----~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~ 175 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVAS----PGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPH 175 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-----SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEE
T ss_pred eccccccceeecccccccccccCCCceeEEec----CCCCEEEEEEccCCeEEEEEeccccc-----cceeeeccccccc
Confidence 99 5666666543 23456677665 555544444 4447777778766542 2222323344566
Q ss_pred EEEEeecCCeEEEE-EeCCCeEEEEECCCCccccceecccceecCCC-----------ceeeecCCCeE-EEEeCCcEEE
Q 010784 263 LMSVAGHKSFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGV-----------PVDMKCHESML-YIASGSSVVT 329 (501)
Q Consensus 263 ~l~~~~~~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~i~~ 329 (501)
...|.| ++++++. ...+..|-++|..+++.+....... ...++. .+......... -......+.+
T Consensus 176 D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~-~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 176 DGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK-KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp EEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS-SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred ccccCc-ccceeeecccccceeEEEeeccceEEEEeeccc-cccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence 788987 5555544 5667889999999886654322211 111111 22222222222 2233346778
Q ss_pred EEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE---c-CCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC
Q 010784 330 IDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG---G-IGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY 403 (501)
Q Consensus 330 ~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~---~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~ 403 (501)
+|..+.+.+.++....+. .-+..+|+++++.+. + +.. |.++|.++.+.. .++... ...+..+.|+++
T Consensus 254 ~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~------~~i~~~~~~~~~h~ef~~d 326 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV------KTITPGPGKRVVHMEFNPD 326 (369)
T ss_dssp STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE------E-HHHHHT--EEEEEE-TT
T ss_pred chhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee------EEEeccCCCcEeccEECCC
Confidence 999999999999887666 778889999999998 3 334 999999986543 444321 224889999999
Q ss_pred --eEEEEecC-CCcEEEEeCCCcccccccc
Q 010784 404 --KIVTGGRD-DLRINIWETDTGMLANSLL 430 (501)
Q Consensus 404 --~~l~~gs~-dg~i~iwd~~~~~~~~~~~ 430 (501)
.+.++.-. ++.|.+||..+.+.+..+.
T Consensus 327 G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 55555433 3389999999999988883
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=4.7e-12 Score=109.91 Aligned_cols=251 Identities=13% Similarity=0.125 Sum_probs=177.7
Q ss_pred CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEE
Q 010784 205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVR 284 (501)
Q Consensus 205 h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~ 284 (501)
-...|+.++|. .++..+.+...+.|..+..+.+.........-........+++|..++.. ++ .|++|-.+|.+.
T Consensus 54 ~~~ris~l~~~--~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg-~Litc~~sG~l~ 128 (412)
T KOG3881|consen 54 ELDRISSLLFG--VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DG-TLITCVSSGNLQ 128 (412)
T ss_pred hhhhhhhheee--cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CC-EEEEEecCCcEE
Confidence 34567777775 23344556655567777777777665422222223445567778877765 33 678888999999
Q ss_pred EEECCCCccccceecccceecCCCceeeecCC-CeEEEEeCC-----cEEEEEcCCCceEeeeccC---------CCcEE
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE-SMLYIASGS-----SVVTIDLRTMQKVMTPAIC---------KPILH 349 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~i~~~d~~~~~~~~~~~~~---------~~~v~ 349 (501)
+|....+..-. ..............+...+ .-.+++.|+ .+.+||++..+++..-+.- .-.++
T Consensus 129 ~~~~k~~d~hs--s~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 129 VRHDKSGDLHS--SKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred EEeccCCcccc--ccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 99998654211 1111112222333333333 334555555 5899999998777654432 23467
Q ss_pred EEEEcCC--CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 350 SFSIMPS--KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 350 ~v~~~~~--~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
++.|-+. ...|++++.-+ +|+||.+.++ +|+..+.--..+++++...|. .++.+|..-|.+..||++.++.
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 8899887 88899999777 9999999764 567888777889999999999 8888888999999999999998
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+.... .+-.+.|.++..+|.+++|+++| -|..+||+|+.+..
T Consensus 282 ~g~~~----kg~tGsirsih~hp~~~~las~G--LDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 282 LGCGL----KGITGSIRSIHCHPTHPVLASCG--LDRYVRIHDIKTRK 323 (412)
T ss_pred ecccc----CCccCCcceEEEcCCCceEEeec--cceeEEEeecccch
Confidence 88732 56688999999999999999999 55999999988844
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=7.9e-12 Score=119.99 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=138.6
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
..|.+|| .+...+.+..+...+.+.+|+ |+|+.|+..+.+ ..|.+||+.++.. ..+....+....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wS----pDg~~la~~s~~~~~~~l~~~dl~~g~~-------~~l~~~~g~~~~ 252 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWS----PDGKKLAYVSFERGRSAIYVQDLATGQR-------ELVASFRGINGA 252 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCC----CCCCEEEEEecCCCCcEEEEEECCCCCE-------EEeccCCCCccC
Confidence 4688899 666666677778889999997 899988877643 4699999987652 233333444557
Q ss_pred EEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 264 MSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
.+|+|++..++++.+.+| .|++||+.+++. ..+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~---------------------------------------------~~l 287 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL---------------------------------------------TRL 287 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCe---------------------------------------------EEC
Confidence 799984444555656555 477778776532 112
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcC-C-c--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCC-C--
Q 010784 342 AICKPILHSFSIMPSKSLICTGGI-G-K--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDD-L-- 413 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~-d-~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~d-g-- 413 (501)
..+.......+|+|||+.|+..++ + . |+++|+.+++. ..+..+.......+|+|+ +.++..+.+ +
T Consensus 288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-------~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-------ERLTFQGNYNARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-------EEeecCCCCccCEEECCCCCEEEEEECCCCce
Confidence 223334457899999998887763 2 2 66677766542 122222234456899999 555543333 2
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCccc
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCP 475 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~~~ 475 (501)
.|.+||+.+++.. .+.. ........|+|||++|+..+.+ ..+.|.+++.......
T Consensus 361 ~I~v~d~~~g~~~-~Lt~------~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~ 416 (433)
T PRK04922 361 RIAVMDLSTGSVR-TLTP------GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQ 416 (433)
T ss_pred eEEEEECCCCCeE-ECCC------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 6999999887654 3321 1133457899999988877642 2346777777544433
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.5e-11 Score=117.40 Aligned_cols=232 Identities=10% Similarity=0.048 Sum_probs=144.0
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC---CCceEEec-CCceeeeccCCC
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---DHSIRLWW-KGSCQRCFKGHN 206 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~vwd-~~~~~~~~~~h~ 206 (501)
...+.++|... ...+.+..+...+.+.+|+| ||+.|+..+. +..|.+|+ .+.....+....
T Consensus 178 ~~~l~~~d~dg--~~~~~lt~~~~~~~~p~wSP-------------DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~ 242 (429)
T PRK03629 178 PYELRVSDYDG--YNQFVVHRSPQPLMSPAWSP-------------DGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 242 (429)
T ss_pred ceeEEEEcCCC--CCCEEeecCCCceeeeEEcC-------------CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence 45788888774 33345556777899999999 7888886542 35688888 222222332233
Q ss_pred CceEEEEeeecCCCCCCEEEEe-eCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-Ce
Q 010784 207 GPVSTLSDKLLGDGSGKILASG-GEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-SK 282 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~sg-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-g~ 282 (501)
+.+....|+ |+|+.|+.. +.+| .|.+||+.++. ...+..+...+....|+| +++.|+..+.+ +.
T Consensus 243 ~~~~~~~~S----PDG~~La~~~~~~g~~~I~~~d~~tg~-------~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~ 310 (429)
T PRK03629 243 RHNGAPAFS----PDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGR 310 (429)
T ss_pred CCcCCeEEC----CCCCEEEEEEcCCCCcEEEEEECCCCC-------EEEccCCCCCcCceEECC-CCCEEEEEeCCCCC
Confidence 344567887 899877754 4455 58889998765 233444445677889998 66666665543 44
Q ss_pred EEEE--ECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 283 VRVW--DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 283 v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
..+| |+.+++. ..+..+........|+|||+++
T Consensus 311 ~~Iy~~d~~~g~~---------------------------------------------~~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 311 PQVYKVNINGGAP---------------------------------------------QRITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred ceEEEEECCCCCe---------------------------------------------EEeecCCCCccCEEECCCCCEE
Confidence 3444 5444321 1111123334568899999988
Q ss_pred EEEc-CC--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCc---EEEEeCCCcccccccccC
Q 010784 361 CTGG-IG--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLR---INIWETDTGMLANSLLCN 432 (501)
Q Consensus 361 ~~~~-~d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~---i~iwd~~~~~~~~~~~~~ 432 (501)
+..+ .+ . |.+||+.+++. ..+.. ........|+|+ +.++.++.++. +.++++ +|+....+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~-------~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l--- 413 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGV-------QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL--- 413 (429)
T ss_pred EEEEccCCCceEEEEECCCCCe-------EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEEC---
Confidence 7765 22 3 88899987653 22221 112346789999 66666566654 677777 46666666
Q ss_pred CCCCCCcceeeeEeec
Q 010784 433 YPEEADISTGCSAMAV 448 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~ 448 (501)
..|...+...+|+|
T Consensus 414 --~~~~~~~~~p~Wsp 427 (429)
T PRK03629 414 --PATDGQVKFPAWSP 427 (429)
T ss_pred --ccCCCCcCCcccCC
Confidence 33456677788887
No 231
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=3.4e-12 Score=108.96 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=117.8
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEeccccccccee-cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRAT-LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~-~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
+...++...+-|...-+.+.+.|.+++||--....+.-.. ...-..+++++.+.+ +...|+.|-..
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-------------e~~~L~vg~~n 89 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-------------ESRRLYVGQDN 89 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-------------cceEEEEEEec
Confidence 3334566666667777889999999999975543233222 233467799999988 78899999999
Q ss_pred CceEEec------CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc-----------------
Q 010784 188 HSIRLWW------KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK----------------- 244 (501)
Q Consensus 188 g~i~vwd------~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~----------------- 244 (501)
|++.-+. .....+....|...|..+-|+ .....+++.+.|..+.---.+.+..
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~ 165 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA 165 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----CCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee
Confidence 9998774 334556667899999988886 4556777776665543221111111
Q ss_pred ------------------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 245 ------------------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 245 ------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
.....++.++.+|.+.+++++|.+ ...++.+|..|..+.+||+...+
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence 122346778899999999999997 67799999999999999997654
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.49 E-value=1.4e-11 Score=103.04 Aligned_cols=270 Identities=11% Similarity=0.072 Sum_probs=172.5
Q ss_pred eeEEEEecccccccce--e-cccCCcceeEEEeeccCcCcccccCCCCcCc-EEEEeeCCCceEEec--CCceeeecc--
Q 010784 132 QNIKIDNFLSESYYRA--T-LSDHKARITCMRLFPLHETSLFRSEPQRTEN-VLVTSSCDHSIRLWW--KGSCQRCFK-- 203 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~--~-~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~vwd--~~~~~~~~~-- 203 (501)
|.+.++++... +... + ...-+..+..+.|..-. .+|. .++-+-.+|.|.++. .......++
T Consensus 46 Gkl~Lys~~d~-~~~~l~~~q~~dts~~~dm~w~~~~----------~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l 114 (339)
T KOG0280|consen 46 GKLHLYSLEDM-KLSPLDTLQCTDTSTEFDMLWRIRE----------TDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL 114 (339)
T ss_pred cceEEEeeccc-ccCccceeeeecccccceeeeeecc----------CCccceeeeccccceEEEEeeccceeeeeeccc
Confidence 56777777653 2222 1 12234557777776421 1444 566677789999995 111111222
Q ss_pred -CCCC---ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC
Q 010784 204 -GHNG---PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK 279 (501)
Q Consensus 204 -~h~~---~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~ 279 (501)
.-.- ...++.|+ +.+..++++..+|.+.+-+..... .+.++..+.|.-+.....|+..+.+++.+|+.
T Consensus 115 s~~ki~~~~~lslD~~----~~~~~i~vs~s~G~~~~v~~t~~~----le~vq~wk~He~E~Wta~f~~~~pnlvytGgD 186 (339)
T KOG0280|consen 115 SSKKISVVEALSLDIS----TSGTKIFVSDSRGSISGVYETEMV----LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD 186 (339)
T ss_pred chhhhhheeeeEEEee----ccCceEEEEcCCCcEEEEecceee----eeecccccccceeeeeeecccCCCceEEecCC
Confidence 1111 23466675 778889999999999865554432 12355788999999999999878899999999
Q ss_pred CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceE-eeeccCCCcEEEEEEcC-CC
Q 010784 280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKV-MTPAICKPILHSFSIMP-SK 357 (501)
Q Consensus 280 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~v~~v~~~~-~~ 357 (501)
|+.+..||++..+. .+ ...+.|...|.+|.-+| .+
T Consensus 187 D~~l~~~D~R~p~~-------------------------------------------~i~~n~kvH~~GV~SI~ss~~~~ 223 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKT-------------------------------------------FIWHNSKVHTSGVVSIYSSPPKP 223 (339)
T ss_pred CceEEEEEecCCcc-------------------------------------------eeeecceeeecceEEEecCCCCC
Confidence 99999999994321 11 12344788899998886 48
Q ss_pred cEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784 358 SLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDTGMLANSLLCNY 433 (501)
Q Consensus 358 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 433 (501)
.++++|+.|. |++||.|+.... +..-. -.+.|..+..+|. ++++++ .-.-.+|-+.+.+..-.......
T Consensus 224 ~~I~TGsYDe~i~~~DtRnm~kP-----l~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s 296 (339)
T KOG0280|consen 224 TYIATGSYDECIRVLDTRNMGKP-----LFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPS 296 (339)
T ss_pred ceEEEeccccceeeeehhcccCc-----cccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeec
Confidence 8999999777 999999965432 33322 2488999999998 566665 55558888877643321111111
Q ss_pred CCCCCcceeeeEeeccccEEEEeecCCCceEE-EeeccC
Q 010784 434 PEEADISTGCSAMAVSGCRIVTASYGEPGLLQ-FRDFSN 471 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~-~w~~~~ 471 (501)
...|.+-...-.|......|++++. -|..++ +|-.-+
T Consensus 297 ~~~hdSl~YG~DWd~~~~~lATCsF-YDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 297 DKIHDSLCYGGDWDSKDSFLATCSF-YDKKIRQLWLHIT 334 (339)
T ss_pred cccccceeeccccccccceeeeeec-cccceeeeeeecc
Confidence 1445555555566444467888765 345544 665433
No 233
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.49 E-value=3e-14 Score=88.76 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=40.8
Q ss_pred cccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhh
Q 010784 20 IADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFRE 66 (501)
Q Consensus 20 ~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~ 66 (501)
+..||+|++.+||+||+++||.++++|||+|+.++.++.+|++++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 46799999999999999999999999999999999999999998753
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=4.5e-12 Score=108.21 Aligned_cols=268 Identities=14% Similarity=0.188 Sum_probs=166.8
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC------------CceeEEEEeec-CCe
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE------------KPIKLMSVAGH-KSF 272 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~v~~l~~~~~-~~~ 272 (501)
..-|.++.|. ..|++|++|..+|.|.++.-..... .+......+..|. ..|..+.|.+. +..
T Consensus 25 adiis~vef~----~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFD----HYGERLATGDKGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEee----cccceEeecCCCCeEEEeecccccc-cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 4568899995 8999999999999999997654332 1223344444454 35778888764 355
Q ss_pred EEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC-CceEee-eccCCCcEEE
Q 010784 273 LLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT-MQKVMT-PAICKPILHS 350 (501)
Q Consensus 273 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~-~~~~~~~v~~ 350 (501)
.++..+.|.+|++|-+..................+.+..+. +...+. .|+.- ..+.+. -.+|..-|++
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr------~p~~~~----~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR------LPVEGR----HDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceee------ceeecc----ccceeeeeeeeeccccceeEeee
Confidence 77888899999999987654322100000001111111100 000000 00000 011122 2358888999
Q ss_pred EEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc-----ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784 351 FSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH-----VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 351 v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~ 423 (501)
+.++.|++.++++.+=+|.+|++.-....+ -+..++.+ ...|++..|+|. .+++-+|..|+|++-|++..
T Consensus 170 IS~NsD~Et~lSADdLRINLWnlei~d~sF---nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 170 ISVNSDKETFLSADDLRINLWNLEIIDQSF---NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred eeecCccceEeeccceeeeeccccccCCce---eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 999999999998877779999987654321 11222222 457899999998 77777789999999999843
Q ss_pred ccc----cccccCC-C------CCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc-------------------
Q 010784 424 MLA----NSLLCNY-P------EEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT------------------- 473 (501)
Q Consensus 424 ~~~----~~~~~~~-~------~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~------------------- 473 (501)
.+- ..+.... + .+--..|..+.|+++|++|++-.+ -+|++||+....
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc---ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 211 1111000 0 112345788999999999999865 599999964322
Q ss_pred ------------------cceeecCCCCceeeecccCCC
Q 010784 474 ------------------CPVLKHEVQNDSKFWGPQCYS 494 (501)
Q Consensus 474 ------------------~~~~s~~~d~~~~~w~~~~~~ 494 (501)
..+.+|+-.+..++++.+.++
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 345578888888888866544
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2e-11 Score=117.18 Aligned_cols=232 Identities=16% Similarity=0.053 Sum_probs=142.9
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCC
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHN 206 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~ 206 (501)
...|.+||... ...+.+..|...+.+.+|+| +|+.|+..+.+ ..|.+|| .+.....+..+.
T Consensus 183 ~~~l~i~D~~g--~~~~~lt~~~~~v~~p~wSp-------------Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~ 247 (433)
T PRK04922 183 RYALQVADSDG--YNPQTILRSAEPILSPAWSP-------------DGKKLAYVSFERGRSAIYVQDLATGQRELVASFR 247 (433)
T ss_pred eEEEEEECCCC--CCceEeecCCCccccccCCC-------------CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC
Confidence 45788898863 44456667788899999999 88888887643 4688998 333333344444
Q ss_pred CceEEEEeeecCCCCCCEEE-EeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCe
Q 010784 207 GPVSTLSDKLLGDGSGKILA-SGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSK 282 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~ 282 (501)
+...+..|+ ++|+.|+ +.+.+| .|.+||+.++. ...+..+.......+|+| +++.|+.++ .+|.
T Consensus 248 g~~~~~~~S----pDG~~l~~~~s~~g~~~Iy~~d~~~g~-------~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~ 315 (433)
T PRK04922 248 GINGAPSFS----PDGRRLALTLSRDGNPEIYVMDLGSRQ-------LTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGR 315 (433)
T ss_pred CCccCceEC----CCCCEEEEEEeCCCCceEEEEECCCCC-------eEECccCCCCccceEECC-CCCEEEEEECCCCC
Confidence 455677887 7888665 555555 58999998765 344455555556789998 566666555 3444
Q ss_pred --EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 283 --VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 283 --v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
|.++|+.+++.. .+..+.......+|+|+|+.+
T Consensus 316 ~~iy~~dl~~g~~~---------------------------------------------~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 316 PQIYRVAASGGSAE---------------------------------------------RLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred ceEEEEECCCCCeE---------------------------------------------EeecCCCCccCEEECCCCCEE
Confidence 555555444210 111112234468999999998
Q ss_pred EEEc-CC--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC---CCcEEEEeCCCcccccccccC
Q 010784 361 CTGG-IG--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD---DLRINIWETDTGMLANSLLCN 432 (501)
Q Consensus 361 ~~~~-~d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~ 432 (501)
+..+ .+ . |.+||+.+++.. .+. +........|+|+ +.++..+. .+.|.++++. +.....+.
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~-- 419 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV-- 419 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc--
Confidence 8754 22 2 999999876532 222 2223456789999 55444333 2457778874 44455552
Q ss_pred CCCCCCcceeeeEeec
Q 010784 433 YPEEADISTGCSAMAV 448 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~ 448 (501)
.+.+.+...+|+|
T Consensus 420 ---~~~g~~~~p~wsp 432 (433)
T PRK04922 420 ---SADGEVREPAWSP 432 (433)
T ss_pred ---cCCCCCCCCccCC
Confidence 2234456667765
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=7.2e-11 Score=112.82 Aligned_cols=218 Identities=12% Similarity=0.048 Sum_probs=134.7
Q ss_pred ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee---CCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG---EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
.|.+|| .+...+.+..+...+.+.+|+ |+|+.|+..+ .+..|.+|++.+++. ..+..+.+ .+...
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wS----PDG~~la~~s~~~g~~~i~i~dl~~G~~----~~l~~~~~---~~~~~ 248 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWS----PDGSKLAYVTFESGRSALVIQTLANGAV----RQVASFPR---HNGAP 248 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEc----CCCCEEEEEEecCCCcEEEEEECCCCCe----EEccCCCC---CcCCe
Confidence 688888 565556666677789999997 8998888654 245799999987652 12222333 34467
Q ss_pred EEeecCCeEEE-EEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 265 SVAGHKSFLLV-TISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 265 ~~~~~~~~~l~-s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
.|+| +++.|+ +.+.+| .|.+||+.+++.. .+
T Consensus 249 ~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~---------------------------------------------~l 282 (429)
T PRK03629 249 AFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR---------------------------------------------QV 282 (429)
T ss_pred EECC-CCCEEEEEEcCCCCcEEEEEECCCCCEE---------------------------------------------Ec
Confidence 8998 555555 444444 4777787765321 11
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEE-ecCC--C
Q 010784 342 AICKPILHSFSIMPSKSLICTGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG-GRDD--L 413 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~-gs~d--g 413 (501)
..+...+....|+|||+.|+..++ ++ |.++|+.+++. ..+..+........|+|+ +.++. +..+ .
T Consensus 283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-------EEeecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence 122345677899999998877664 33 44456655432 233333344567889998 55544 3333 3
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC-CceEEEeeccCCcccee
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE-PGLLQFRDFSNATCPVL 477 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-~g~i~~w~~~~~~~~~~ 477 (501)
.|.+||+.+++.. .+.. ........|+|||++|+.++.+. ...+.++++........
T Consensus 356 ~I~~~dl~~g~~~-~Lt~------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 356 HIAKQDLATGGVQ-VLTD------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred eEEEEECCCCCeE-EeCC------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEEC
Confidence 5888999887643 3321 11234578999999999988542 12367777754443333
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.8e-11 Score=115.78 Aligned_cols=235 Identities=12% Similarity=0.065 Sum_probs=140.0
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCC
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHN 206 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~ 206 (501)
...+.++|.. ....+.+..+.+.+.+.+|+| ||+.|+..+.+ ..|.+|| .+.....+....
T Consensus 175 ~~~L~~~D~d--G~~~~~l~~~~~~v~~p~wSP-------------DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~ 239 (427)
T PRK02889 175 RYQLQISDAD--GQNAQSALSSPEPIISPAWSP-------------DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK 239 (427)
T ss_pred ccEEEEECCC--CCCceEeccCCCCcccceEcC-------------CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC
Confidence 3456667764 344455667888899999999 88888877643 3588899 322233333344
Q ss_pred CceEEEEeeecCCCCCCEEE-EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEE
Q 010784 207 GPVSTLSDKLLGDGSGKILA-SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVR 284 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~ 284 (501)
+.+.+..|+ |+|+.|+ +.+.+|...+|.++.... ....+..+........|+| +++.|+..+ .+|...
T Consensus 240 g~~~~~~~S----PDG~~la~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 240 GSNSAPAWS----PDGRTLAVALSRDGNSQIYTVNADGS-----GLRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQ 309 (427)
T ss_pred CCccceEEC----CCCCEEEEEEccCCCceEEEEECCCC-----CcEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcE
Confidence 556688897 8888776 567788877776653221 2344544555566778998 566665544 345566
Q ss_pred EEECC--CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784 285 VWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT 362 (501)
Q Consensus 285 vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 362 (501)
+|.+. +++.. . ..+ +........|+|+|++|+.
T Consensus 310 Iy~~~~~~g~~~------------------------------------------~-lt~--~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 310 IYRMPASGGAAQ------------------------------------------R-VTF--TGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEEECCCCceE------------------------------------------E-Eec--CCCCcCceEECCCCCEEEE
Confidence 66543 22110 0 011 1222345789999999886
Q ss_pred EcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCCCc--EEEEeCCCcccccccccCCC
Q 010784 363 GGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDDLR--INIWETDTGMLANSLLCNYP 434 (501)
Q Consensus 363 ~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~dg~--i~iwd~~~~~~~~~~~~~~~ 434 (501)
.+. + . |.+||+.+++.. .+.. ........|+|+ +.++ +....|. +.+.++ +++....+.
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~-------~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~---- 411 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVT-------ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS---- 411 (427)
T ss_pred EEccCCcEEEEEEECCCCCeE-------EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee----
Confidence 653 2 2 999999876532 2221 123467789999 4444 4333333 555555 455555552
Q ss_pred CCCCcceeeeEeecc
Q 010784 435 EEADISTGCSAMAVS 449 (501)
Q Consensus 435 ~~~~~~v~~~~~s~~ 449 (501)
.+.+.+...+|+|-
T Consensus 412 -~~~g~~~~p~wsp~ 425 (427)
T PRK02889 412 -VQGGDVREPSWGPF 425 (427)
T ss_pred -cCCCCCCCCccCCC
Confidence 23445666777763
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.7e-11 Score=105.44 Aligned_cols=210 Identities=14% Similarity=0.183 Sum_probs=141.2
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVR 284 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~ 284 (501)
+..+..++|+ +.-..++++..|-.|++|+-.... ...++ .....|++++|-|.....|+.|+..| |.
T Consensus 98 ~~dlr~~aWh----qH~~~fava~nddvVriy~ksst~-------pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 98 EIDLRGVAWH----QHIIAFAVATNDDVVRIYDKSSTC-------PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-IC 165 (445)
T ss_pred hcceeeEeec----hhhhhhhhhccCcEEEEeccCCCC-------CceecchhhcceeEEEeccCCcceeeeeecce-eE
Confidence 3456778887 455567888999999999987732 33333 24567999999998888888888754 89
Q ss_pred EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC-CceEeeeccCCCcEEEEEEcCCCcEEEEE
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT-MQKVMTPAICKPILHSFSIMPSKSLICTG 363 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 363 (501)
+|.....-.... ...+- .+ ...+....+| .+|+++.|.+||..++++
T Consensus 166 iW~~s~tln~~r------------~~~~~-------------------s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tA 213 (445)
T KOG2139|consen 166 IWSDSRTLNANR------------NIRMM-------------------STHHLQVLQDPGH-NPVTSMQWNEDGTILVTA 213 (445)
T ss_pred EEEcCccccccc------------ccccc-------------------cccchhheeCCCC-ceeeEEEEcCCCCEEeec
Confidence 998754311000 00000 00 0112233344 789999999999999999
Q ss_pred cC-Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeC-CCcccccccccCCCCCCCc
Q 010784 364 GI-GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET-DTGMLANSLLCNYPEEADI 439 (501)
Q Consensus 364 ~~-d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~ 439 (501)
+- +. |.|||..++... ++.. ---+.++-+.|+|+ .++.+++-|+..++|+. ++....+-.. ..+
T Consensus 214 S~gsssi~iWdpdtg~~~----pL~~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l------gsg 281 (445)
T KOG2139|consen 214 SFGSSSIMIWDPDTGQKI----PLIP--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL------GSG 281 (445)
T ss_pred ccCcceEEEEcCCCCCcc----cccc--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec------cCC
Confidence 94 44 999999998754 2332 22567889999999 66666679999999954 3333333331 134
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.|...+|+|+|++|..+.+ |.-+++.+...++
T Consensus 282 rvqtacWspcGsfLLf~~s---gsp~lysl~f~~~ 313 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACS---GSPRLYSLTFDGE 313 (445)
T ss_pred ceeeeeecCCCCEEEEEEc---CCceEEEEeecCC
Confidence 8999999999998877664 4556666554444
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.7e-11 Score=111.66 Aligned_cols=246 Identities=14% Similarity=0.138 Sum_probs=167.0
Q ss_pred CCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEeecCCeEEEEEeCCC
Q 010784 204 GHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVAGHKSFLLVTISKDS 281 (501)
Q Consensus 204 ~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~s~dg 281 (501)
.+...-+.|..+ ++|+|+ ++|..--.|++||+.... ..+..| ...+..+....++-..++.--.|.
T Consensus 49 e~p~ast~ik~s----~DGqY~lAtG~YKP~ikvydlanLS--------LKFERhlDae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 49 EMPTASTRIKVS----PDGQYLLATGTYKPQIKVYDLANLS--------LKFERHLDAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred CCccccceeEec----CCCcEEEEecccCCceEEEEcccce--------eeeeecccccceeEEEeccchhhheEeecCc
Confidence 366677888886 888875 566778899999998753 333334 333433333323444444445666
Q ss_pred eEEEEECCCCccccceecccceecCCCceee-ecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM-KCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
+|.+-.--.. . ........+.-++. .++-+..+++++..|+-++++.|+-+..+....+.++++..++-..+|
T Consensus 117 ~IefHak~G~-h-----y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLl 190 (703)
T KOG2321|consen 117 TIEFHAKYGR-H-----YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLL 190 (703)
T ss_pred eeeehhhcCe-e-----eeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceE
Confidence 6655332111 0 00000122222333 234456667778899999999999999998888999999999999999
Q ss_pred EEEcCCc-EEEEecCCCCCCCCCCCcccccCccc-----CeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784 361 CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVG-----SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY 433 (501)
Q Consensus 361 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 433 (501)
++|+.++ |..||.+....+........+..|.+ .|+++.|+.+ --++.|+.+|.|.|||+++.+++..-.
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd--- 267 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD--- 267 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---
Confidence 9999888 99999998765422222223333433 4999999998 777888999999999999988876653
Q ss_pred CCCCCcceeeeEeecc--ccEEEEeecCCCceEEEeeccCCcc
Q 010784 434 PEEADISTGCSAMAVS--GCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~--g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.+...+|..+.|.+. +..+++. +...+++||-.++..
T Consensus 268 -h~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 268 -HGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDECTGKP 306 (703)
T ss_pred -cCCccceeeecccccCCCceEEec---chHHhhhcccccCCc
Confidence 233567888888765 4566665 567999999665554
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4.4e-11 Score=114.43 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=138.1
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
..|.++| .+...+.+..+...+.+.+|+ |+|+.|+..+.+ ..|.+||+.++.. ..+....+.+..
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wS----PDG~~la~~s~~~~~~~I~~~dl~~g~~-------~~l~~~~g~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWS----PDGTKLAYVSFESKKPVVYVHDLATGRR-------RVVANFKGSNSA 244 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEc----CCCCEEEEEEccCCCcEEEEEECCCCCE-------EEeecCCCCccc
Confidence 3566777 666666666778889999997 899988876643 3599999988753 223333345567
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECC--CCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTS--TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
..|+|++..++++.+.+|...+|.+. ++. ...+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------------------------~~~l 279 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------------------------------------LRRL 279 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------------------------------cEEC
Confidence 89998444444566777776666543 221 1122
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEec--CCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---
Q 010784 342 AICKPILHSFSIMPSKSLICTGGI-GK-AMTWDI--RRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL--- 413 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg--- 413 (501)
..+........|+|||+.|+..++ ++ ..+|.+ ..++. ..+..+........|+|+ +.++..+.++
T Consensus 280 t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-------~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 280 TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-------QRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-------EEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 223344556789999998876663 33 555554 43321 111112223446789999 6665544443
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc--eEEEeeccCCcccee-ecCCCCceeeecc
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG--LLQFRDFSNATCPVL-KHEVQNDSKFWGP 490 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g--~i~~w~~~~~~~~~~-s~~~d~~~~~w~~ 490 (501)
.|.+||+.+++.. .+. . ........|+|||++|+.++.+ .| .+.+.+......... ....+-....|.+
T Consensus 353 ~I~v~d~~~g~~~-~lt----~--~~~~~~p~~spdg~~l~~~~~~-~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 353 KLYVQDLATGQVT-ALT----D--TTRDESPSFAPNGRYILYATQQ-GGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEEEECCCCCeE-Ecc----C--CCCccCceECCCCCEEEEEEec-CCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 6999999887654 332 1 1223567999999999888753 33 355555533222222 2223334445643
No 241
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.1e-09 Score=103.73 Aligned_cols=253 Identities=13% Similarity=0.077 Sum_probs=168.9
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
-+++.|++.|.+ |.|+. ..|.|-|..+ .+.+..+..|+..|+.+.|.|...+ ..-.+.+...-+||++...|.|.+
T Consensus 18 ~~A~Dw~~~GLi-Aygsh-slV~VVDs~s-~q~iqsie~h~s~V~~VrWap~~~p-~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSGLI-AYGSH-SLVSVVDSRS-LQLIQSIELHQSAVTSVRWAPAPSP-RDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccceE-EEecC-ceEEEEehhh-hhhhhccccCccceeEEEeccCCCc-hhccCccccceeEEeccccCcEEE
Confidence 567778887755 44443 4566667666 5889999999999999999984321 111111123457888888999999
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 270 (501)
|| .+..+..+..|..++..++|-+..+....+|+.-....++.+|+..+|++ .-..........|+.+.|-+
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------FWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce------eeccccCCcceeeeeeCCCC
Confidence 99 67777788889999999999876655546777767778999999999985 44444445566778998887
Q ss_pred CeEEEEEeCCCeEEEEECCCCcccc----ceecccc--------------eec---CCC------ceeeecC---CCeEE
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVR----SSCCVGM--------------TSV---PGV------PVDMKCH---ESMLY 320 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~--------------~~~---~~~------~~~~~~~---~~~~~ 320 (501)
...+..-+..|.+.+-+.-..+... .+..... ... +.. ...+++. .+.++
T Consensus 168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 7777777777777776653222110 0000000 000 000 0011222 34567
Q ss_pred EEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC--CcEEEEEcCCc-EEEEecCC
Q 010784 321 IASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS--KSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 321 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~-i~iwd~~~ 375 (501)
++--..+.++|++-...+.......+.+.-+.+-|+ ...+.+.-.+| +.+|-.+.
T Consensus 248 i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 248 ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 777789999999998888877776676666777776 45677777776 88886543
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.6e-10 Score=111.25 Aligned_cols=231 Identities=12% Similarity=-0.001 Sum_probs=145.2
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC---CCceEEec-CCceeeeccCCC
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC---DHSIRLWW-KGSCQRCFKGHN 206 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~vwd-~~~~~~~~~~h~ 206 (501)
...|.++|... ...+.+..|...+.+.+|+| ||+.|+..+. +..|.+|| .+.....+..+.
T Consensus 181 ~~~l~~~d~dg--~~~~~lt~~~~~v~~p~wSp-------------DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~ 245 (435)
T PRK05137 181 IKRLAIMDQDG--ANVRYLTDGSSLVLTPRFSP-------------NRQEITYMSYANGRPRVYLLDLETGQRELVGNFP 245 (435)
T ss_pred ceEEEEECCCC--CCcEEEecCCCCeEeeEECC-------------CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC
Confidence 45788888763 45566778888999999999 7888887654 46799999 333334455566
Q ss_pred CceEEEEeeecCCCCCCEEE-EeeCCCc--EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CC-
Q 010784 207 GPVSTLSDKLLGDGSGKILA-SGGEDAT--VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DS- 281 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg- 281 (501)
+.+....|+ |+|+.|+ +.+.++. |.+||+.++. ...+..+........|+| +++.++..+. +|
T Consensus 246 g~~~~~~~S----PDG~~la~~~~~~g~~~Iy~~d~~~~~-------~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~ 313 (435)
T PRK05137 246 GMTFAPRFS----PDGRKVVMSLSQGGNTDIYTMDLRSGT-------TTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGS 313 (435)
T ss_pred CcccCcEEC----CCCCEEEEEEecCCCceEEEEECCCCc-------eEEccCCCCccCceeEcC-CCCEEEEEECCCCC
Confidence 677788897 7888765 5566665 6667877654 344555666667789998 6666666553 33
Q ss_pred -eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 282 -KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 282 -~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
.|.++|+.+++. ..+..+...+....|+|+|+.|
T Consensus 314 ~~Iy~~d~~g~~~---------------------------------------------~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 314 PQLYVMNADGSNP---------------------------------------------RRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred CeEEEEECCCCCe---------------------------------------------EEeecCCCcccCeEECCCCCEE
Confidence 466666654421 1111123445667899999998
Q ss_pred EEEcC--C-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCC-----CcEEEEeCCCccccccc
Q 010784 361 CTGGI--G-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDD-----LRINIWETDTGMLANSL 429 (501)
Q Consensus 361 ~~~~~--d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~d-----g~i~iwd~~~~~~~~~~ 429 (501)
+..+. + . |.+||+..+.. ..+. ....+....|+|+ +.++ ++... ..+.++|+..+.. ..+
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~~-------~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l 419 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSGE-------RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV 419 (435)
T ss_pred EEEEcCCCceEEEEEECCCCce-------Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEc
Confidence 87652 2 3 88888755432 2222 1224677899999 5444 33222 2578888765443 344
Q ss_pred ccCCCCCCCcceeeeEeec
Q 010784 430 LCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 430 ~~~~~~~~~~~v~~~~~s~ 448 (501)
.. ...+...+|+|
T Consensus 420 ~~------~~~~~~p~Wsp 432 (435)
T PRK05137 420 PT------PGDASDPAWSP 432 (435)
T ss_pred cC------CCCccCcccCC
Confidence 21 22345556665
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=2.9e-11 Score=101.18 Aligned_cols=234 Identities=14% Similarity=0.075 Sum_probs=156.9
Q ss_pred EEeecCCeeeEEEEecccccccceecccCCc------ceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C-
Q 010784 124 FSTQGSSIQNIKIDNFLSESYYRATLSDHKA------RITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K- 195 (501)
Q Consensus 124 ~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~------~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~- 195 (501)
.++....+|.|.++..... .....|++-.. .-.++.|++ .+..++++..+|.+.+-+ +
T Consensus 87 ~l~~a~a~G~i~~~r~~~~-~ss~~L~~ls~~ki~~~~~lslD~~~-------------~~~~i~vs~s~G~~~~v~~t~ 152 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDED-ESSVHLRGLSSKKISVVEALSLDIST-------------SGTKIFVSDSRGSISGVYETE 152 (339)
T ss_pred eeeeccccceEEEEeeccc-eeeeeecccchhhhhheeeeEEEeec-------------cCceEEEEcCCCcEEEEecce
Confidence 4455666788888775532 22222322111 123555665 778899999999999554 2
Q ss_pred C--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeE
Q 010784 196 G--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFL 273 (501)
Q Consensus 196 ~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 273 (501)
. +.++..+.|+-+.....|+ ..+.+++++|+.|+.+..||++..+. ......+.|...|.+|.-+|..+.+
T Consensus 153 ~~le~vq~wk~He~E~Wta~f~---~~~pnlvytGgDD~~l~~~D~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~ 225 (339)
T KOG0280|consen 153 MVLEKVQTWKVHEFEAWTAKFS---DKEPNLVYTGGDDGSLSCWDIRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTY 225 (339)
T ss_pred eeeeecccccccceeeeeeecc---cCCCceEEecCCCceEEEEEecCCcc----eeeecceeeecceEEEecCCCCCce
Confidence 2 2334788999999999997 45668999999999999999994332 1233366799999999999988999
Q ss_pred EEEEeCCCeEEEEECCCC-ccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEE
Q 010784 274 LVTISKDSKVRVWDTSTS-SAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFS 352 (501)
Q Consensus 274 l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~ 352 (501)
+++|+.|..|++||.+.. +++.. - .-.+.|..+.
T Consensus 226 I~TGsYDe~i~~~DtRnm~kPl~~--------------------------------------------~-~v~GGVWRi~ 260 (339)
T KOG0280|consen 226 IATGSYDECIRVLDTRNMGKPLFK--------------------------------------------A-KVGGGVWRIK 260 (339)
T ss_pred EEEeccccceeeeehhcccCcccc--------------------------------------------C-ccccceEEEE
Confidence 999999999999999854 22111 0 1246788888
Q ss_pred EcCC--CcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec-CCCcEE-EEeCCCcc
Q 010784 353 IMPS--KSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR-DDLRIN-IWETDTGM 424 (501)
Q Consensus 353 ~~~~--~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs-~dg~i~-iwd~~~~~ 424 (501)
.+|. +.+++++...+.+|-+....... ........+.|.+-++.-.|+.. .++++++ .|+.++ +|-.-++.
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLE-FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccc-hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 8885 45666666777888887765422 01122344566666666667554 6677753 577644 77655543
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=2.3e-11 Score=118.53 Aligned_cols=147 Identities=21% Similarity=0.253 Sum_probs=122.8
Q ss_pred eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C
Q 010784 118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K 195 (501)
Q Consensus 118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~ 195 (501)
++++..++++|+.-+.+.+|++... ..-..+.||.+.|..+.|+. +|.++++.|.|.++++|+ +
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~d-n~p~~l~GHeG~iF~i~~s~-------------dg~~i~s~SdDRsiRlW~i~s 206 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHED-NKPIRLKGHEGSIFSIVTSL-------------DGRYIASVSDDRSIRLWPIDS 206 (967)
T ss_pred ccCcEEEEEeccccccEEEEecccc-CCcceecccCCceEEEEEcc-------------CCcEEEEEecCcceeeeeccc
Confidence 4578899999999999999998843 33336899999999999998 899999999999999998 4
Q ss_pred Cceee-eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC-ceeEEEEeecCCeE
Q 010784 196 GSCQR-CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK-PIKLMSVAGHKSFL 273 (501)
Q Consensus 196 ~~~~~-~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~ 273 (501)
.+... +.-+|.+.|..+.|. ++ .+++++.|-+.++|+.+... ...+.+|.. .|..++..+ +...
T Consensus 207 ~~~~~~~~fgHsaRvw~~~~~----~n--~i~t~gedctcrvW~~~~~~-------l~~y~~h~g~~iw~~~~~~-~~~~ 272 (967)
T KOG0974|consen 207 REVLGCTGFGHSARVWACCFL----PN--RIITVGEDCTCRVWGVNGTQ-------LEVYDEHSGKGIWKIAVPI-GVII 272 (967)
T ss_pred ccccCcccccccceeEEEEec----cc--eeEEeccceEEEEEecccce-------ehhhhhhhhcceeEEEEcC-CceE
Confidence 44443 566899999999996 43 99999999999999776543 457777754 688888886 7789
Q ss_pred EEEEeCCCeEEEEECCCCc
Q 010784 274 LVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 274 l~s~s~dg~v~vwd~~~~~ 292 (501)
.+|++.|+.+++||+....
T Consensus 273 ~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEeeccCcchhhhhhhccc
Confidence 9999999999999987654
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.36 E-value=8.9e-10 Score=99.36 Aligned_cols=317 Identities=14% Similarity=0.125 Sum_probs=199.7
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
...++..+++||.|.++++... ..|.+|.-....++ ..+ .| ..|.-+.|+| ++++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l-~~~-~~-~~V~~~~fSP-------------~~kYL~tw~~~p 93 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKL-VRF-RH-PDVKYLDFSP-------------NEKYLVTWSREP 93 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhhe-eee-ec-CCceecccCc-------------ccceeeeeccCC
Confidence 5567899999999999998765 45788987765322 222 23 3588888888 889999865433
Q ss_pred ---------------ceEEec--CCceeeeccCCCCc--eE-EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc
Q 010784 189 ---------------SIRLWW--KGSCQRCFKGHNGP--VS-TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 189 ---------------~i~vwd--~~~~~~~~~~h~~~--v~-~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 248 (501)
.+.+|| .+..+..+.....+ .. -+.|+ .+..+++-- ....++|+++ +... ..
T Consensus 94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s----~~D~y~ARv-v~~sl~i~e~-t~n~--~~ 165 (561)
T COG5354 94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFS----IDDKYVARV-VGSSLYIHEI-TDNI--EE 165 (561)
T ss_pred ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeee----ecchhhhhh-ccCeEEEEec-CCcc--cc
Confidence 489999 77788888766555 44 56776 455555543 2347999997 3321 00
Q ss_pred cceeeccCCCCceeEEEEeec-CCeEEEE-----EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE
Q 010784 249 ALKATLYGHEKPIKLMSVAGH-KSFLLVT-----ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA 322 (501)
Q Consensus 249 ~~~~~~~~~~~~v~~l~~~~~-~~~~l~s-----~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
.....++ ...|....++|. +...|+. .+.++.+++|.+..+..+..... +...+..+.....++.+++.
T Consensus 166 ~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 166 HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEecCCceEEEE
Confidence 0111222 356777888875 3333443 35678899999886554332211 12222222222222222221
Q ss_pred e------------CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCccc
Q 010784 323 S------------GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 323 ~------------~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~ 387 (501)
. .+.+++++++........ .-.++|...+|.|.++.+++.+ ... +.++|++.. ..
T Consensus 241 ~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---------l~ 310 (561)
T COG5354 241 VMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---------LR 310 (561)
T ss_pred EEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc---------eE
Confidence 1 126788888744333332 4589999999999977766655 555 999999874 22
Q ss_pred ccCcccCeEEEEecCC-eEEEEecC---CCcEEEEeCCCccccc-ccccCCCCCCCcceeeeEeeccccEEEEeecC---
Q 010784 388 LDGHVGSVTQLHMDPY-KIVTGGRD---DLRINIWETDTGMLAN-SLLCNYPEEADISTGCSAMAVSGCRIVTASYG--- 459 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~-~~l~~gs~---dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d--- 459 (501)
+......=+.+.|+|. ++++.++- .|.+.+||........ .+. ......+.|+|||+++.+....
T Consensus 311 ~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 311 FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------GLNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------cCCceEeeccCCceEEEecCCCccc
Confidence 3334555677889999 55555333 5789999987644433 552 2234567899999999887543
Q ss_pred -CCceEEEeeccCC
Q 010784 460 -EPGLLQFRDFSNA 472 (501)
Q Consensus 460 -~~g~i~~w~~~~~ 472 (501)
.|..|.+|++...
T Consensus 384 ~~Dn~i~l~~v~g~ 397 (561)
T COG5354 384 RVDNSIKLWDVYGA 397 (561)
T ss_pred ccCcceEEEEecCc
Confidence 5788999997643
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.1e-09 Score=99.81 Aligned_cols=315 Identities=15% Similarity=0.115 Sum_probs=193.0
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-----
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD----- 187 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----- 187 (501)
-+.+.|||.|.||+|--..| |.+|--.+ ...++.+ .|++ |.-+.||| +.++|+|-+..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~-f~r~~RF-~Hp~-Vq~idfSP-------------~EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES-FDRIQRF-YHPG-VQFIDFSP-------------NEKYLVTYSPEPIIVE 275 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc-HHHHHhc-cCCC-ceeeecCC-------------ccceEEEecCCccccC
Confidence 47889999999999877644 67887554 2333443 4554 88889999 88999986642
Q ss_pred ------CceEEec--CCceeeeccCC--CCceE-EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 188 ------HSIRLWW--KGSCQRCFKGH--NGPVS-TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 188 ------g~i~vwd--~~~~~~~~~~h--~~~v~-~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
..++||| +|...+.|... ...+. -..|| .+++++|--.. .+|.|++..... ++..-.-
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS----~DdKy~Arm~~-~sisIyEtpsf~------lld~Ksl 344 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS----HDDKYFARMTG-NSISIYETPSFM------LLDKKSL 344 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEec----cCCceeEEecc-ceEEEEecCcee------eeccccc
Confidence 4689999 88887777652 22333 35776 78889887665 478899877643 1222222
Q ss_pred CCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEE--e------
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA--S------ 323 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------ 323 (501)
.-..|....|+| .+++|+-=+.. ..+.+..+.+++.++..... .... ..+.+..++-+++ .
T Consensus 345 ki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf---nVsD--ckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 345 KISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF---NVSD--CKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred CCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccce---eeec--cEEEeccCCcEEEEEEEeeccc
Confidence 345678888998 45555543221 23455555554443322111 1111 1122222222221 1
Q ss_pred -----CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC---Cc-EEEEecCCCCCCCCCCCcccccCcccC
Q 010784 324 -----GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI---GK-AMTWDIRRSQDAVKPQPMAELDGHVGS 394 (501)
Q Consensus 324 -----~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~ 394 (501)
-..+.++.++........-.-...|...+|-|.|..+++-+. .. +.+|.+.+.... +..+..+. ...
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~--~~lVk~~d--k~~ 494 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK--PSLVKELD--KKF 494 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc--hhhhhhhc--ccc
Confidence 124666777665544333334678899999999888776652 22 999988842221 34455554 356
Q ss_pred eEEEEecCC-eEEEEe---cCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEE
Q 010784 395 VTQLHMDPY-KIVTGG---RDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQF 466 (501)
Q Consensus 395 v~~l~~~~~-~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~ 466 (501)
.+.+.|+|. ++++.+ |..|.+.++|+....+..+-. ......+.+.|.|.|+|++++++. .|.--++
T Consensus 495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri 569 (698)
T KOG2314|consen 495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRI 569 (698)
T ss_pred cceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccccccccceECCCCCEEEEeeehhhhccccceEE
Confidence 788999999 665543 467899999987533332221 112345678999999999998853 2334456
Q ss_pred eecc
Q 010784 467 RDFS 470 (501)
Q Consensus 467 w~~~ 470 (501)
|++.
T Consensus 570 ~tfq 573 (698)
T KOG2314|consen 570 FTFQ 573 (698)
T ss_pred EEee
Confidence 6654
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=7.4e-11 Score=99.05 Aligned_cols=110 Identities=8% Similarity=0.134 Sum_probs=84.5
Q ss_pred CCcEEEEEEcCCCcEEEEEc--CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC---CCcEEE
Q 010784 345 KPILHSFSIMPSKSLICTGG--IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD---DLRINI 417 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~---dg~i~i 417 (501)
.++|.+++|+|+|+.+++.. .+. |.+||++ .+ .+..+. ...++.+.|+|+ ++++.++. .|.|.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~------~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK------KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc------EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence 45799999999998876543 455 9999997 22 234553 567889999999 77776543 467999
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC----CCceEEEeecc
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG----EPGLLQFRDFS 470 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~g~i~~w~~~ 470 (501)
||+++.+.+.++. ...++.++|+|||++|++++.. .|+.+++|++.
T Consensus 130 wd~~~~~~i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 130 WDVRKKKKISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EECCCCEEeeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 9999888887773 2346899999999999998753 36778888875
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=5.8e-11 Score=115.78 Aligned_cols=189 Identities=17% Similarity=0.264 Sum_probs=142.0
Q ss_pred eCCcEEEeecCCeeeEEEEecccccccceecccCCcc--eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C
Q 010784 119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKAR--ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K 195 (501)
Q Consensus 119 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~--V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~ 195 (501)
.-+...++.+..+..+-+||...+ .....+. +... ..++... .++++.-++++|+.-+.|.+|+ .
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~-~~~~~i~-~~er~~l~~~~~~----------g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNS-SVLSKIQ-SDERCTLYSSLII----------GDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccC-ceehhcC-CCceEEEEeEEEE----------eccCcEEEEEeccccccEEEEecc
Confidence 345567777778889999998864 3333332 2222 1121111 1122678999999999999998 2
Q ss_pred -CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEE
Q 010784 196 -GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLL 274 (501)
Q Consensus 196 -~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 274 (501)
.+.-..+.+|++.|.++.|+ .+|.++++.|+|.++|+|++++.+. ......+|+..|..+.+.|+ .+
T Consensus 164 ~dn~p~~l~GHeG~iF~i~~s----~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRvw~~~~~~n---~i 231 (967)
T KOG0974|consen 164 EDNKPIRLKGHEGSIFSIVTS----LDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARVWACCFLPN---RI 231 (967)
T ss_pred ccCCcceecccCCceEEEEEc----cCCcEEEEEecCcceeeeecccccc-----cCcccccccceeEEEEeccc---ee
Confidence 22222688999999999997 8999999999999999999999875 44577889999999999873 89
Q ss_pred EEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccC-CCcEEEEEE
Q 010784 275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAIC-KPILHSFSI 353 (501)
Q Consensus 275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~v~~ 353 (501)
++++.|.+.++|+....+. ..+..| ...+..++.
T Consensus 232 ~t~gedctcrvW~~~~~~l---------------------------------------------~~y~~h~g~~iw~~~~ 266 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQL---------------------------------------------EVYDEHSGKGIWKIAV 266 (967)
T ss_pred EEeccceEEEEEeccccee---------------------------------------------hhhhhhhhcceeEEEE
Confidence 9999999999996654321 234445 456889999
Q ss_pred cCCCcEEEEEcCCc-EEEEecCCC
Q 010784 354 MPSKSLICTGGIGK-AMTWDIRRS 376 (501)
Q Consensus 354 ~~~~~~l~~~~~d~-i~iwd~~~~ 376 (501)
.++...++++++|+ +++||+...
T Consensus 267 ~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 267 PIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cCCceEEEeeccCcchhhhhhhcc
Confidence 99999999999888 999998753
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=7.7e-10 Score=106.59 Aligned_cols=213 Identities=15% Similarity=0.079 Sum_probs=133.2
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
..|.++| .+...+.+..+...+....|+ ++|++|+.+..+ ..|++||+.++.. ..+..+...+..
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~S----pdg~~la~~~~~~~~~~i~v~d~~~g~~-------~~~~~~~~~~~~ 238 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWS----PDGQKLAYVSFESGKPEIYVQDLATGQR-------EKVASFPGMNGA 238 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCC----CCCCEEEEEEcCCCCcEEEEEECCCCCE-------EEeecCCCCccc
Confidence 3577777 555566666677778888887 899998877644 4799999988652 233344555667
Q ss_pred EEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 264 MSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
++|+|++..++++.+.++ .|++||+.+++.. .+
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------------------------------------------~l 273 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------------------------------------------RL 273 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------------------------------------------EC
Confidence 899984334445555444 4777777665321 11
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---
Q 010784 342 AICKPILHSFSIMPSKSLICTGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL--- 413 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg--- 413 (501)
..+........|+|+|+.|+..++ ++ |+++|+.+++. ..+..+...+....|+|+ +.++.++.++
T Consensus 274 ~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-------~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~ 346 (417)
T TIGR02800 274 TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-------RRLTFRGGYNASPSWSPDGDLIAFVHREGGGF 346 (417)
T ss_pred CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EEeecCCCCccCeEECCCCCEEEEEEccCCce
Confidence 122333345689999988776553 22 77788776542 233334456678899998 6555555555
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCC-ceEEEeecc
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP-GLLQFRDFS 470 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-g~i~~w~~~ 470 (501)
.|.+||+.++... .+.. ........|+|||++|+.++.+.. ..+.+.+..
T Consensus 347 ~i~~~d~~~~~~~-~l~~------~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 347 NIAVMDLDGGGER-VLTD------TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEEeCCCCCeE-EccC------CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7899998875432 2311 112345689999999988875321 234454433
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.8e-11 Score=125.20 Aligned_cols=188 Identities=16% Similarity=0.219 Sum_probs=147.8
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
+.++.-+|...+.+||+.||.+++|.+..+......-..-...|+.+.|+. +|+.+..+..||.+.+
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-------------qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-------------QGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-------------cCCceeeeccCCceee
Confidence 677777899999999999999999999886443333333448899999988 8999999999999999
Q ss_pred ec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEee---CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEee
Q 010784 193 WW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG---EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAG 268 (501)
Q Consensus 193 wd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 268 (501)
|. ..+.....+.|....+.+.|. +..+++++ .++.+.+||..-... .-++. ..|.+.++++++.|
T Consensus 2278 ~q~~pk~~~s~qchnk~~~Df~Fi------~s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2278 WQASPKPYTSWQCHNKALSDFRFI------GSLLATAGRSSDNRNVCLWDTLLPPM---NSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred cccCCcceeccccCCccccceeee------ehhhhccccCCCCCcccchhcccCcc---cceee--eecCCCceEEEEcC
Confidence 99 666777788999999999985 26677664 578999999765432 11333 78999999999998
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
..+.|++|+.+|.|++||++..+....+ +.
T Consensus 2347 -~~qllisggr~G~v~l~D~rqrql~h~~--------------------------------------------~~----- 2376 (2439)
T KOG1064|consen 2347 -KHQLLISGGRKGEVCLFDIRQRQLRHTF--------------------------------------------QA----- 2376 (2439)
T ss_pred -cceEEEecCCcCcEEEeehHHHHHHHHh--------------------------------------------hh-----
Confidence 7889999999999999999987543221 11
Q ss_pred EEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 349 HSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
+. ...++++|+..+ |+||++.....+
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEEccccchh
Confidence 33 566888888777 999999886544
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.31 E-value=2e-10 Score=96.48 Aligned_cols=148 Identities=14% Similarity=0.195 Sum_probs=103.6
Q ss_pred eEEeeCCcEEEeecCC----------eeeEEEEecccccccceeccc-CCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 115 HILLDNNDIFSTQGSS----------IQNIKIDNFLSESYYRATLSD-HKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~~----------d~~i~vw~~~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
.+.|+++|.+|+.-.. -+...+|.++........+.- ..++|.+++|+| +|+.|+.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-------------~g~~fav 76 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-------------NGNEFAV 76 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-------------CCCEEEE
Confidence 4567777766653322 244556665332344444433 345799999999 6777644
Q ss_pred --eeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccceeeccCC
Q 010784 184 --SSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 184 --~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
|..++.|.+|| .++.+..+. ...+..+.|+ |+|++|++|+. .|.|.+||.++.+ .+.... |
T Consensus 77 i~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~ws----P~G~~l~~~g~~n~~G~l~~wd~~~~~------~i~~~~-~ 143 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWS----PDGRFLVLAGFGNLNGDLEFWDVRKKK------KISTFE-H 143 (194)
T ss_pred EEccCCcccEEEcCcccEeEeec--CCCceEEEEC----CCCCEEEEEEccCCCcEEEEEECCCCE------Eeeccc-c
Confidence 55678999999 766666664 5678899997 89999999875 4679999999655 244433 3
Q ss_pred CCceeEEEEeecCCeEEEEEeC------CCeEEEEECCC
Q 010784 258 EKPIKLMSVAGHKSFLLVTISK------DSKVRVWDTST 290 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s~------dg~v~vwd~~~ 290 (501)
..++.++|+| ++++|++++. |..++||+...
T Consensus 144 -~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 144 -SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred -CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 3478999998 7888888764 78899999854
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=1.1e-08 Score=97.06 Aligned_cols=296 Identities=9% Similarity=-0.012 Sum_probs=167.2
Q ss_pred cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee
Q 010784 122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ 199 (501)
Q Consensus 122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~ 199 (501)
+..+.+++.++.+..+|..+| +.+....-.......... ++..++.++.+|.+..+| +|+.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~v---------------~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVGA---------------DGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred CCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceEE---------------cCCEEEEEcCCCEEEEEECCCCcEe
Confidence 345666677789999998886 555443332221112221 457788888899999999 67766
Q ss_pred eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce-----eEEEEeecCCeEE
Q 010784 200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI-----KLMSVAGHKSFLL 274 (501)
Q Consensus 200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l 274 (501)
-..... +.+.+.-. -.+..++.++.+|.|..+|.++++. +.........+ ....+. + ..+
T Consensus 129 W~~~~~-~~~~~~p~-----v~~~~v~v~~~~g~l~a~d~~tG~~------~W~~~~~~~~~~~~~~~sp~~~--~-~~v 193 (377)
T TIGR03300 129 WRAKLS-SEVLSPPL-----VANGLVVVRTNDGRLTALDAATGER------LWTYSRVTPALTLRGSASPVIA--D-GGV 193 (377)
T ss_pred eeeccC-ceeecCCE-----EECCEEEEECCCCeEEEEEcCCCce------eeEEccCCCceeecCCCCCEEE--C-CEE
Confidence 554422 22222111 1245677778899999999998864 22222211111 111122 3 367
Q ss_pred EEEeCCCeEEEEECCCCccccceecccceecC------CCceeeecCCCeEEEEe-CCcEEEEEcCCCceEeeeccCCCc
Q 010784 275 VTISKDSKVRVWDTSTSSAVRSSCCVGMTSVP------GVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 275 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
+.+..+|.+..+|.++++.+............ .........++.+++.. ++.+..+|.++++.+...... .
T Consensus 194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~- 271 (377)
T TIGR03300 194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S- 271 (377)
T ss_pred EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-
Confidence 77888899999999998754332111000000 00001112344555554 468999999999887765521 1
Q ss_pred EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCCeEEEEecCCCcEEEEeCCCccc
Q 010784 348 LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
...... .+..++.++.++ +..+|..+++.+ ...... .....+.....+ .+..++.+|.|+++|..+|+.
T Consensus 272 ~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~------W~~~~~~~~~~ssp~i~g~-~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 272 YQGPAV--DDNRLYVTDADGVVVALDRRSGSEL------WKNDELKYRQLTAPAVVGG-YLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred ccCceE--eCCEEEEECCCCeEEEEECCCCcEE------EccccccCCccccCEEECC-EEEEEeCCCEEEEEECCCCCE
Confidence 112222 455666667666 999999987654 222111 111222223333 444456999999999999999
Q ss_pred ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 426 ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
+.++..+ ...+..--...++ .|+.++ .||.|..+
T Consensus 343 ~~~~~~~-----~~~~~~sp~~~~~-~l~v~~--~dG~l~~~ 376 (377)
T TIGR03300 343 VARLKTD-----GSGIASPPVVVGD-GLLVQT--RDGDLYAF 376 (377)
T ss_pred EEEEEcC-----CCccccCCEEECC-EEEEEe--CCceEEEe
Confidence 9888432 2122221122244 466776 56888765
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.7e-11 Score=109.92 Aligned_cols=287 Identities=14% Similarity=0.192 Sum_probs=175.2
Q ss_pred ceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---------CCceeeeccCCCCceEEEEeee
Q 010784 146 RATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---------KGSCQRCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 146 ~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---------~~~~~~~~~~h~~~v~~l~~s~ 216 (501)
+..+.||+..|..++-.. +.+-+++++.|++|++|. +..|..++..|+.+|.++.|.
T Consensus 728 L~nf~GH~~~iRai~Aid-------------NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL- 793 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-------------NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL- 793 (1034)
T ss_pred eecccCcHHHhHHHHhcc-------------cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-
Confidence 456789999999988776 789999999999999995 334677889999999999996
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc-CCCCceeEEEEeec-CCeEEEEE-eCCCeEEEEECCCCcc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGH-KSFLLVTI-SKDSKVRVWDTSTSSA 293 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~-~~~~l~s~-s~dg~v~vwd~~~~~~ 293 (501)
.+.+++++ .||-|.+||.--+.. +.+... ...+.+..+...++ +..++++| +...+|+++|.+....
T Consensus 794 ---~~lr~i~S--cD~giHlWDPFigr~-----Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 794 ---ADLRSIAS--CDGGIHLWDPFIGRL-----LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred ---eccceeee--ccCcceeecccccch-----hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc
Confidence 66667765 578999999876653 111221 12223333333333 44455554 7889999999999877
Q ss_pred ccceecccceecCCCceeeecCCCeEEEE---eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EE
Q 010784 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIA---SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AM 369 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~ 369 (501)
......-....+.+...++...+.+..++ +.+.+.+.|.++++.+..++..+-....++- |..+.++...-|. +.
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHsla 942 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLA 942 (1034)
T ss_pred eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeE
Confidence 65554443334555566666666655554 3468999999999998877765555544543 4555566555455 66
Q ss_pred E-EecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEee
Q 010784 370 T-WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMA 447 (501)
Q Consensus 370 i-wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s 447 (501)
+ |....+... .+.+....+..-+. +-..-+++......+.+|--.. .....++..-.+....+..++++--
T Consensus 943 VnWhaldgimh------~q~kpppepahflq-svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~L 1015 (1034)
T KOG4190|consen 943 VNWHALDGIMH------LQDKPPPEPAHFLQ-SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPL 1015 (1034)
T ss_pred eeehhcCCeee------eccCCCCcchhhhh-ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeec
Confidence 6 765554321 11111111111111 0012233333455677774221 1111111111123334567788888
Q ss_pred ccccEEEEeecCCCceEEE
Q 010784 448 VSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 448 ~~g~~l~s~~~d~~g~i~~ 466 (501)
|-+.-+..|. +.|.|.+
T Consensus 1016 PLN~afLaGn--e~G~IaL 1032 (1034)
T KOG4190|consen 1016 PLNCAFLAGN--EHGAIAL 1032 (1034)
T ss_pred cccchhhccC--CCCceee
Confidence 8777777777 6688765
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=7.9e-11 Score=120.69 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=152.5
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeecc-CCCCceEEEEeeecCCCCCCEEE
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILA 226 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~ 226 (501)
+.|-..|.++.-+| ...+.+||+.||.|++|. .+..+..++ .....|+.+.|+ ..|+.+.
T Consensus 2205 k~~v~~v~r~~sHp-------------~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~----~qGnk~~ 2267 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP-------------SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN----HQGNKFG 2267 (2439)
T ss_pred ecccCceeeecCCC-------------CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc----ccCCcee
Confidence 34556677776666 678999999999999998 555555443 234889999996 8899999
Q ss_pred EeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe---CCCeEEEEECCCCccccceecccce
Q 010784 227 SGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMT 303 (501)
Q Consensus 227 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~ 303 (501)
.+..||.+.+|..... +....+.|+.....++|.. ..+++++ .++.+.+||..-...
T Consensus 2268 i~d~dg~l~l~q~~pk-------~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~---------- 2327 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPK-------PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM---------- 2327 (2439)
T ss_pred eeccCCceeecccCCc-------ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcc----------
Confidence 9999999999999843 4677788999999888873 4666664 568899999654311
Q ss_pred ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784 304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKP 382 (501)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 382 (501)
...+. ..|.+.++++++-|..++|++|+.+| |++||++..+..
T Consensus 2328 -------------------------------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~--- 2371 (2439)
T KOG1064|consen 2328 -------------------------------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR--- 2371 (2439)
T ss_pred -------------------------------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH---
Confidence 01112 56899999999999999999999999 999999985543
Q ss_pred CCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccccccc
Q 010784 383 QPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 383 ~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 431 (501)
++++. ++...++++|+..|.++||++.....+.++..
T Consensus 2372 ---h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2372 ---HTFQA---------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ---HHhhh---------hhhhheeeccCcccceEEEEccccchhhcCch
Confidence 44443 45337889999999999999999888888853
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=6.7e-09 Score=100.16 Aligned_cols=215 Identities=11% Similarity=0.042 Sum_probs=129.3
Q ss_pred ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
.|.++| .+...+.+..+...+....|+ |+|+.|+..+.+ ..|.+||+.++.. ..+....+.+...
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wS----pDG~~la~~s~~~~~~~l~~~~l~~g~~-------~~l~~~~g~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWS----PDGKRIAYVSFEQKRPRIFVQNLDTGRR-------EQITNFEGLNGAP 248 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeEC----CCCCEEEEEEcCCCCCEEEEEECCCCCE-------EEccCCCCCcCCe
Confidence 466777 565566666677888999997 899988766543 3688999987753 2233333344567
Q ss_pred EEeecCCeEEE-EEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 265 SVAGHKSFLLV-TISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 265 ~~~~~~~~~l~-s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
.|+| +++.|+ +.+.+| .|.+||+.+++.. .+
T Consensus 249 ~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~---------------------------------------------~l 282 (430)
T PRK00178 249 AWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLS---------------------------------------------RV 282 (430)
T ss_pred EECC-CCCEEEEEEccCCCceEEEEECCCCCeE---------------------------------------------Ec
Confidence 8998 555554 555555 4677777765321 11
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEec-CCC--
Q 010784 342 AICKPILHSFSIMPSKSLICTGGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGR-DDL-- 413 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs-~dg-- 413 (501)
..+........|+|||+.++..++ + . |+++|+.+++.. .+...........|+|+ +.++..+ .++
T Consensus 283 t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-------~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 283 TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-------RVTFVGNYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------EeecCCCCccceEECCCCCEEEEEEccCCce
Confidence 122334456789999987776653 2 2 777888765421 11111122345689999 4444433 333
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCcc
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATC 474 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~~ 474 (501)
.|.++|+.+++. ..+.. ........|+|||++|+..+.+ ....|.+.++.....
T Consensus 356 ~l~~~dl~tg~~-~~lt~------~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 356 HVAAQDLQRGSV-RILTD------TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred EEEEEECCCCCE-EEccC------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 588899988764 33321 1112245899999999887642 223466666654433
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.1e-09 Score=102.84 Aligned_cols=287 Identities=12% Similarity=0.092 Sum_probs=189.8
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccc--------------cccceecccCCcceeEEEeeccCcCcccccCCCCcC
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSE--------------SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE 178 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 178 (501)
..|+.|+.+..|+|+|+.||.++|-.+.+. ...-.++.||.+.|..+.|+. +.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-------------~~ 83 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-------------NN 83 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-------------cc
Confidence 689999999999999999999999987542 123467889999999999998 67
Q ss_pred cEEEEeeCCCceEEec--CCceeee-c-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 179 NVLVTSSCDHSIRLWW--KGSCQRC-F-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd--~~~~~~~-~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
+.|-|...+|.|.||- .+.-... + ....+.|.+|+|. .+|..++....||.|.+=.++.+.. .-..+
T Consensus 84 QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn----~dG~kIcIvYeDGavIVGsvdGNRI-----wgKeL 154 (1189)
T KOG2041|consen 84 QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN----LDGTKICIVYEDGAVIVGSVDGNRI-----WGKEL 154 (1189)
T ss_pred ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc----CCCcEEEEEEccCCEEEEeecccee-----cchhc
Confidence 8999999999999996 3332211 1 2356678899995 8999999999999998888776542 12222
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
++ .....+.|++ +...++.+-..|.+.++|....-.. ...... .+-.++
T Consensus 155 kg--~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c-----------------~Vn~tg---------- 203 (1189)
T KOG2041|consen 155 KG--QLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFER-KLEKDC-----------------EVNGTG---------- 203 (1189)
T ss_pred ch--heccceeecc-cHHHHHhhhcCCcEEEecccccHHH-hhhhce-----------------EEeeee----------
Confidence 22 2233677887 6667777888899999997643111 000000 000000
Q ss_pred CceEeeeccCCCcEEEEEE--------cCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e
Q 010784 335 MQKVMTPAICKPILHSFSI--------MPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K 404 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~--------~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~ 404 (501)
.+......|..+.| -|+.-.++.+-+++ +.|-.-.+... |+..- ..-.+....|+++ .
T Consensus 204 -----~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-----Pvv~d--tgm~~vgakWnh~G~ 271 (1189)
T KOG2041|consen 204 -----IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-----PVVVD--TGMKIVGAKWNHNGA 271 (1189)
T ss_pred -----eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-----CeEEe--cccEeecceecCCCc
Confidence 00000111222222 34666777777766 77765554432 22221 2356788899999 7
Q ss_pred EEEEecCCC---------cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 405 IVTGGRDDL---------RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 405 ~l~~gs~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+++.++.|. .|+++.. -|+.+.++ +.....|++++|-..|-.++.+ -|+.|.+=++.+.-
T Consensus 272 vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtl-----kvpg~~It~lsWEg~gLriA~A---vdsfiyfanIRP~y 340 (1189)
T KOG2041|consen 272 VLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTL-----KVPGSCITGLSWEGTGLRIAIA---VDSFIYFANIRPEY 340 (1189)
T ss_pred EEEEccCcccccCccccceEEEecc-chhheEEE-----ecCCceeeeeEEcCCceEEEEE---ecceEEEEeecccc
Confidence 777765532 4666654 36777777 4457789999999888888877 34777776666543
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=2.4e-10 Score=96.58 Aligned_cols=249 Identities=14% Similarity=0.149 Sum_probs=154.0
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC------------CceeEEEEeec-CCe
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE------------KPIKLMSVAGH-KSF 272 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~v~~l~~~~~-~~~ 272 (501)
...|+++.| +..|.+|++|...|.|.+|.-..... -+......+++|. ..|..|.|... +..
T Consensus 26 ad~ItaVef----d~tg~YlatGDkgGRVvlfer~~s~~-ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEF----DETGLYLATGDKGGRVVLFEREKSYG-CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEe----ccccceEeecCCCceEEEeecccccc-cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 457899999 48899999999999999997654331 1122333455554 34667777643 345
Q ss_pred EEEEEeCCCeEEEEECCCCccc--cceecccce--ecCCCceee------ecCCCeEEEEeCCcEEEEEcCCCceEe-ee
Q 010784 273 LLVTISKDSKVRVWDTSTSSAV--RSSCCVGMT--SVPGVPVDM------KCHESMLYIASGSSVVTIDLRTMQKVM-TP 341 (501)
Q Consensus 273 ~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~ 341 (501)
.++..+.|.+|++|-+...... ......... ...+...+. ..+....+++. .+.+ ..
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa------------~p~rvya 168 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA------------KPCRVYA 168 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe------------ccceecc
Confidence 7778889999999998765321 111110000 111111110 11111111111 1111 12
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc-----ccCeEEEEecCC--eEEEEecCCCc
Q 010784 342 AICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH-----VGSVTQLHMDPY--KIVTGGRDDLR 414 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~--~~l~~gs~dg~ 414 (501)
..|...+.++.+..|.+.++++.+=+|.+|++...... --+..++.| ...|++..|+|. .++.-++..|.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 45788899999999999998887666999998765432 112233333 356889999998 55555678999
Q ss_pred EEEEeCCCcc------cccccccCC-----CCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcccee
Q 010784 415 INIWETDTGM------LANSLLCNY-----PEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 415 i~iwd~~~~~------~~~~~~~~~-----~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
|++-|++... .+....... -.+....|..+.|+++|++|++-.+ -+|++||+.....++.
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---ltvkiwDvnm~k~pik 316 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---ceEEEEecccccCCce
Confidence 9999998421 111110000 0123456888999999999999866 5999999887666543
No 258
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=3.8e-10 Score=95.36 Aligned_cols=258 Identities=15% Similarity=0.212 Sum_probs=170.6
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEecccc----cccceecccCC------------cceeEEEeeccCcCcccccCCC
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSE----SYYRATLSDHK------------ARITCMRLFPLHETSLFRSEPQ 175 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~----~~~~~~~~~h~------------~~V~~~~~~~~~~~~~~~~~~~ 175 (501)
.|+++.|+..|.|+++|...|.|.++.-+.. .+....+++|. ..|..+.|..++
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t---------- 97 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT---------- 97 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC----------
Confidence 4899999999999999999999999986543 23444567774 468999998743
Q ss_pred CcCcEEEEeeCCCceEEec---C------------------Cceee-----------------------ec-cCCCCceE
Q 010784 176 RTENVLVTSSCDHSIRLWW---K------------------GSCQR-----------------------CF-KGHNGPVS 210 (501)
Q Consensus 176 ~~~~~l~s~~~dg~i~vwd---~------------------~~~~~-----------------------~~-~~h~~~v~ 210 (501)
..+.++..+.|.+|++|. . +..+. .. ..|.-.|.
T Consensus 98 -~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 98 -GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred -CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 345667777899999995 1 10000 01 24666788
Q ss_pred EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCC-----CceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784 211 TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHE-----KPIKLMSVAGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 211 ~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~s~s~dg~v~v 285 (501)
++.|. .+.+.++++ .|=.|.+|+++-.... -.+..++.|. .-|++..|+|...+.+...+..|.|++
T Consensus 177 SiS~N----sD~et~lSa-DdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 177 SISFN----SDKETLLSA-DDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred eeeec----Cchheeeec-cceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 88884 677777765 5778999998764431 1233344443 357888999987788888889999999
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI 365 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 365 (501)
-|+++...-............ +-...-+..-...|..+.|+++|+++++-+.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D----------------------------~v~~~ff~eivsSISD~kFs~ngryIlsRdy 300 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTID----------------------------GVDVDFFEEIVSSISDFKFSDNGRYILSRDY 300 (460)
T ss_pred hhhhhhhhccCchhhhhhccC----------------------------cccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence 999965321110000000000 0001112223466888999999999998888
Q ss_pred CcEEEEecCCCCCCCCCCCcccccCcc------------cCe---EEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 366 GKAMTWDIRRSQDAVKPQPMAELDGHV------------GSV---TQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 366 d~i~iwd~~~~~~~~~~~~~~~~~~h~------------~~v---~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
-.++|||.+..+.. +.++.-|. ..| ..+.|+.+ +-+.+||.....-++-+.
T Consensus 301 ltvkiwDvnm~k~p-----ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 301 LTVKIWDVNMAKNP-----IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ceEEEEecccccCC-----ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 77999999987543 45544331 222 24667777 777777787777777643
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=7.7e-09 Score=99.37 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=124.4
Q ss_pred ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC-CC--cEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
.|.++| .+...+.+..+...+.+..|+ |+|+.|+..+. ++ .|.+||+.+++. ..+....+.....
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wS----PDG~~La~~s~~~g~~~L~~~dl~tg~~-------~~lt~~~g~~~~~ 267 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWS----PDGRKLAYVSFENRKAEIFVQDIYTQVR-------EKVTSFPGINGAP 267 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceEC----CCCCEEEEEEecCCCcEEEEEECCCCCe-------EEecCCCCCcCCe
Confidence 566667 555455666677788899997 89988876653 33 588889887652 1222222233467
Q ss_pred EEeecCCeEEEEEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784 265 SVAGHKSFLLVTISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 342 (501)
.|+|++..++++.+.+|. |.++|+.+++. ..+.
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~---------------------------------------------~~lt 302 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKAL---------------------------------------------TRIT 302 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCe---------------------------------------------EECc
Confidence 899844444455666664 66667665532 1122
Q ss_pred cCCCcEEEEEEcCCCcEEEEEcC-C-c--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCCC--c
Q 010784 343 ICKPILHSFSIMPSKSLICTGGI-G-K--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDDL--R 414 (501)
Q Consensus 343 ~~~~~v~~v~~~~~~~~l~~~~~-d-~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~dg--~ 414 (501)
.+........|+|||+.++..++ + . |+++|+.+++. ..+..........+|+|+ + ++.+...++ .
T Consensus 303 ~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 303 RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence 23344567789999998876653 2 2 77778776542 122111222345689999 4 444443344 4
Q ss_pred EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc--eEEEeeccCC
Q 010784 415 INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG--LLQFRDFSNA 472 (501)
Q Consensus 415 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g--~i~~w~~~~~ 472 (501)
|.++|+.+++.. .+... .......|+|||++|+..+. .+| .+++++....
T Consensus 376 I~~~dl~~g~~~-~lt~~------~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 376 IARQDLETGAMQ-VLTST------RLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEEECCCCCeE-EccCC------CCCCCceECCCCCEEEEEEe-cCCceEEEEEECCCC
Confidence 555787776543 23211 11223479999999887764 233 4667776433
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=3.8e-08 Score=91.49 Aligned_cols=270 Identities=13% Similarity=0.120 Sum_probs=159.2
Q ss_pred CceEEec----CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeC----CCcEEEEeccCCCccccccceeeccCC
Q 010784 188 HSIRLWW----KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGE----DATVRLWSLSSSGKRGQQALKATLYGH 257 (501)
Q Consensus 188 g~i~vwd----~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~ 257 (501)
+.|.+|+ +++.. ..+. -......++++ +++++|++... +|.|..|++..... ....+......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~----~~~~~LY~~~e~~~~~g~v~~~~i~~~~g--~L~~~~~~~~~ 85 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVS----PDGRRLYVVNEGSGDSGGVSSYRIDPDTG--TLTLLNSVPSG 85 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-----TTSSEEEEEETTSSTTTEEEEEEEETTTT--EEEEEEEEEES
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEE----eCCCEEEEEEccccCCCCEEEEEECCCcc--eeEEeeeeccC
Confidence 6777775 23221 2211 23345567775 78999998877 57999999887521 12233333323
Q ss_pred CCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCC-ccccceecccc--------eecCCCceeeecCCC--eEEEEeC-
Q 010784 258 EKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTS-SAVRSSCCVGM--------TSVPGVPVDMKCHES--MLYIASG- 324 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~- 324 (501)
......+++++ ++.+|+++. .+|.|.++++... ........... ......+.++.++++ .++++.-
T Consensus 86 g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 44456788987 555555554 6899999999874 32222111111 012334455556655 4455443
Q ss_pred -CcEEEEEcCCCc--e--Eeeec-cCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccC------
Q 010784 325 -SSVVTIDLRTMQ--K--VMTPA-ICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDG------ 390 (501)
Q Consensus 325 -~~i~~~d~~~~~--~--~~~~~-~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~------ 390 (501)
+.|.+|++.... . ...+. ........+.|+|+++++++.. .++ |.++++....-. .+.+..+..
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS--LTEIQTISTLPEGFT 242 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE--EEEEEEEESCETTSC
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc--eeEEEEeeecccccc
Confidence 389999987654 2 12222 2355678999999999887776 344 999988822111 111111111
Q ss_pred cccCeEEEEecCC--eEEEEecCCCcEEEEeCCC--ccc--ccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceE
Q 010784 391 HVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT--GML--ANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLL 464 (501)
Q Consensus 391 h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i 464 (501)
.......|+++|+ .++++....+.|.+|++.. +++ +..+.. .......++++|+|++|+++.. .++.|
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-----~G~~Pr~~~~s~~g~~l~Va~~-~s~~v 316 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-----GGKFPRHFAFSPDGRYLYVANQ-DSNTV 316 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-----SSSSEEEEEE-TTSSEEEEEET-TTTEE
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-----CCCCccEEEEeCCCCEEEEEec-CCCeE
Confidence 1225788999999 5566666788899999942 332 223311 1334688999999999999886 57889
Q ss_pred EEeeccCCc
Q 010784 465 QFRDFSNAT 473 (501)
Q Consensus 465 ~~w~~~~~~ 473 (501)
.+|+++...
T Consensus 317 ~vf~~d~~t 325 (345)
T PF10282_consen 317 SVFDIDPDT 325 (345)
T ss_dssp EEEEEETTT
T ss_pred EEEEEeCCC
Confidence 999986544
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=5.5e-08 Score=90.43 Aligned_cols=276 Identities=11% Similarity=0.138 Sum_probs=156.6
Q ss_pred eeEEEEecccccccceecc--cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC----CCceEEec---C-Cce--e
Q 010784 132 QNIKIDNFLSESYYRATLS--DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC----DHSIRLWW---K-GSC--Q 199 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----dg~i~vwd---~-~~~--~ 199 (501)
+.|.++++......+.... .-.....-++++| ++++|.+... +|.|..|. . +.+ +
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-------------~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-------------DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-------------TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-------------CCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 6778877732212121111 1233455677777 7888888776 46888886 2 332 2
Q ss_pred eeccCCCCceEEEEeeecCCCCCCEEEEee-CCCcEEEEeccCCCccccccceeec--------cCCCCceeEEEEeecC
Q 010784 200 RCFKGHNGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLSSSGKRGQQALKATL--------YGHEKPIKLMSVAGHK 270 (501)
Q Consensus 200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~~~~~ 270 (501)
.........-..++++ +++++|+++. .+|.|.++++............... ........++.++| +
T Consensus 80 ~~~~~~g~~p~~i~~~----~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-d 154 (345)
T PF10282_consen 80 NSVPSGGSSPCHIAVD----PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-D 154 (345)
T ss_dssp EEEEESSSCEEEEEEC----TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-T
T ss_pred eeeccCCCCcEEEEEe----cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-C
Confidence 2333233344567774 8899888886 4899999999875431111001111 11223456889998 5
Q ss_pred CeEEEE-EeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC--eEEEEeC--CcEEEEEcC--CCce--Eeee
Q 010784 271 SFLLVT-ISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES--MLYIASG--SSVVTIDLR--TMQK--VMTP 341 (501)
Q Consensus 271 ~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~i~~~d~~--~~~~--~~~~ 341 (501)
++++++ .-....|.+|++....................+..+.++++ .++++.. +.|.++++. ++.. +...
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe
Confidence 555544 44567899999987652111111112244555667777665 5666653 478888887 3322 2222
Q ss_pred cc----C--CCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecC
Q 010784 342 AI----C--KPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRD 411 (501)
Q Consensus 342 ~~----~--~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~ 411 (501)
.. . ......+.++|||++|+++..+. |.+|++....-. .+.+..+.........++++|+ .++++...
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~--l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT--LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT--EEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc--eEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 21 1 22578999999999988877433 999999432111 1223333333445789999999 55666667
Q ss_pred CCcEEEEeC--CCccccc
Q 010784 412 DLRINIWET--DTGMLAN 427 (501)
Q Consensus 412 dg~i~iwd~--~~~~~~~ 427 (501)
++.|.+|++ .+|.+..
T Consensus 313 s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTEEEEEEEETTTTEEEE
T ss_pred CCeEEEEEEeCCCCcEEE
Confidence 889999977 4555443
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=7.8e-09 Score=99.34 Aligned_cols=231 Identities=13% Similarity=0.043 Sum_probs=131.0
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC-CC--ceEEec-CCceeeeccCCCC
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC-DH--SIRLWW-KGSCQRCFKGHNG 207 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~vwd-~~~~~~~~~~h~~ 207 (501)
..+.++|... .-.+.+..+...+.+..|+| ||+.|+..+. ++ .|.+|| .+.....+....+
T Consensus 198 ~~l~i~d~dG--~~~~~l~~~~~~~~~p~wSP-------------DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g 262 (448)
T PRK04792 198 YQLMIADYDG--YNEQMLLRSPEPLMSPAWSP-------------DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG 262 (448)
T ss_pred eEEEEEeCCC--CCceEeecCCCcccCceECC-------------CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC
Confidence 4566667653 22345666777899999999 7888877654 33 477777 2222222322233
Q ss_pred ceEEEEeeecCCCCCCEEE-EeeCCCc--EEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCe-
Q 010784 208 PVSTLSDKLLGDGSGKILA-SGGEDAT--VRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSK- 282 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~-sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~- 282 (501)
......|+ |+|+.|+ +.+.+|. |.++|+.++. ...+..+........|+| +++.++..+ .++.
T Consensus 263 ~~~~~~wS----PDG~~La~~~~~~g~~~Iy~~dl~tg~-------~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~ 330 (448)
T PRK04792 263 INGAPRFS----PDGKKLALVLSKDGQPEIYVVDIATKA-------LTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKP 330 (448)
T ss_pred CcCCeeEC----CCCCEEEEEEeCCCCeEEEEEECCCCC-------eEECccCCCCccceEECC-CCCEEEEEECCCCCc
Confidence 34467887 7888776 4566665 6777877654 344444555566788998 555554444 3333
Q ss_pred -EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE
Q 010784 283 -VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC 361 (501)
Q Consensus 283 -v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 361 (501)
|.++|+.+++... .++. .......+|+|||++++
T Consensus 331 ~Iy~~dl~~g~~~~-------------------------------------------Lt~~--g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 331 QIYRVNLASGKVSR-------------------------------------------LTFE--GEQNLGGSITPDGRSMI 365 (448)
T ss_pred eEEEEECCCCCEEE-------------------------------------------EecC--CCCCcCeeECCCCCEEE
Confidence 4445555442110 0111 12223468999998887
Q ss_pred EEcC-Cc---EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCc--EEEEeCCCcccccccccCC
Q 010784 362 TGGI-GK---AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLR--INIWETDTGMLANSLLCNY 433 (501)
Q Consensus 362 ~~~~-d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~--i~iwd~~~~~~~~~~~~~~ 433 (501)
..+. ++ |.++|+.+++.. .+... .......|+|+ .++.+...+|. +.+++. +|+....+.
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~-------~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~--- 433 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ-------VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP--- 433 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE-------EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---
Confidence 7653 32 566787765421 12111 11223479999 44444444444 677776 566666663
Q ss_pred CCCCCcceeeeEeec
Q 010784 434 PEEADISTGCSAMAV 448 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~ 448 (501)
.+...+...+|+|
T Consensus 434 --~~~g~~~~p~Wsp 446 (448)
T PRK04792 434 --AGQGEVKSPAWSP 446 (448)
T ss_pred --CCCCCcCCCccCC
Confidence 2234456677776
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=8.4e-11 Score=106.83 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=153.0
Q ss_pred eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCC-ccccccceeeccCCCCceeEEEEeecCCeEEEEE
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSG-KRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTI 277 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~ 277 (501)
+..+.+|+..|..++-. .+.+-+++++.|.+|++|.++... ..+...+..++..|..+|.++.|.. +...++
T Consensus 728 L~nf~GH~~~iRai~Ai----dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~-- 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAI----DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA-- 800 (1034)
T ss_pred eecccCcHHHhHHHHhc----ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceee--
Confidence 45678999999988754 567889999999999999998643 2233446778899999999999985 544555
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe---CCcEEEEEcCCCceEeeecc-----CCCcEE
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS---GSSVVTIDLRTMQKVMTPAI-----CKPILH 349 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~-----~~~~v~ 349 (501)
+.||.|++||.--+..+.+..........+.+.++......++++. .++++++|.+..+....++. ....+.
T Consensus 801 ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 4578999999887766554333333334444555544334444443 24899999999887655543 346688
Q ss_pred EEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEE-EeCCCccccc
Q 010784 350 SFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINI-WETDTGMLAN 427 (501)
Q Consensus 350 ~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~i-wd~~~~~~~~ 427 (501)
+++..+.|+.++++-..+ |.+.|.++++.+ .....-.-....++.-.++.++....|.++.+ |....|....
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI------Nswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVI------NSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCcee------ccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeee
Confidence 999999999999998777 999999998765 33332222333343333367776678999998 9887776555
Q ss_pred cc
Q 010784 428 SL 429 (501)
Q Consensus 428 ~~ 429 (501)
+.
T Consensus 955 q~ 956 (1034)
T KOG4190|consen 955 QD 956 (1034)
T ss_pred cc
Confidence 55
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.21 E-value=4.8e-09 Score=101.07 Aligned_cols=218 Identities=13% Similarity=0.061 Sum_probs=130.4
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCC
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHN 206 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~ 206 (501)
...+.++|... ...+.+..+...+...+|+| +|++|+.+..+ ..|++|| .......+..+.
T Consensus 169 ~~~l~~~d~~g--~~~~~l~~~~~~~~~p~~Sp-------------dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~ 233 (417)
T TIGR02800 169 RYELQVADYDG--ANPQTITRSREPILSPAWSP-------------DGQKLAYVSFESGKPEIYVQDLATGQREKVASFP 233 (417)
T ss_pred cceEEEEcCCC--CCCEEeecCCCceecccCCC-------------CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC
Confidence 45677777653 33455666777788889998 88988877654 4799998 322233344455
Q ss_pred CceEEEEeeecCCCCCCEEE-EeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeC-CC-
Q 010784 207 GPVSTLSDKLLGDGSGKILA-SGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISK-DS- 281 (501)
Q Consensus 207 ~~v~~l~~s~~~~~~~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~-dg- 281 (501)
+.+.+++|+ ++++.|+ +.+.++ .|.+||+.++. ...+..+........|+| +++.|+..+. ++
T Consensus 234 ~~~~~~~~s----pDg~~l~~~~~~~~~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 234 GMNGAPAFS----PDGSKLAVSLSKDGNPDIYVMDLDGKQ-------LTRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGS 301 (417)
T ss_pred CCccceEEC----CCCCEEEEEECCCCCccEEEEECCCCC-------EEECCCCCCCCCCEEECC-CCCEEEEEECCCCC
Confidence 667778897 7887665 444444 58888888764 233444444455678887 5666655543 33
Q ss_pred -eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEE
Q 010784 282 -KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 282 -~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 360 (501)
.|.++|+.+++. ..+..+........|+|+|+++
T Consensus 302 ~~iy~~d~~~~~~---------------------------------------------~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 302 PQIYMMDADGGEV---------------------------------------------RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred ceEEEEECCCCCE---------------------------------------------EEeecCCCCccCeEECCCCCEE
Confidence 466666654421 1111223455678899999988
Q ss_pred EEEcCC----cEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC---cEEEEeCCCccccccc
Q 010784 361 CTGGIG----KAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL---RINIWETDTGMLANSL 429 (501)
Q Consensus 361 ~~~~~d----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg---~i~iwd~~~~~~~~~~ 429 (501)
+.++.+ .|.+||+.++.. ..+.. ........|+|+ +.++..+.++ .+.+.+. ++.....+
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~-------~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE-------RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe-------EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 877643 288888877432 12221 122345679998 5444433433 3555554 34444444
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=7.1e-09 Score=95.47 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=138.6
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeecc---CCCCceEEEEeeec----------------CCCCCCEEEEeeCCCcEE
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFK---GHNGPVSTLSDKLL----------------GDGSGKILASGGEDATVR 235 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~---~h~~~v~~l~~s~~----------------~~~~~~~l~sg~~dg~i~ 235 (501)
...++|....||.+++|| .++....|. .-.+..++..|... ...+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 578999999999999999 555544443 22344555555421 112345678888999999
Q ss_pred EEeccCCCccccccceeec--cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeee
Q 010784 236 LWSLSSSGKRGQQALKATL--YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMK 313 (501)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (501)
+++...++. ...+ ..|.+.|.++.++. +...|.+++.|+.+..|+....+..+...+ ....+.++.
T Consensus 84 ~ys~~~g~i------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-----~~~~~~sl~ 151 (541)
T KOG4547|consen 84 LYSVAGGEI------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKE-----QKPLVSSLC 151 (541)
T ss_pred EEEecCCeE------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeecc-----CCCccceEE
Confidence 999998873 3333 46999999999885 677999999999999999998876554432 233344555
Q ss_pred cCCCeEEEE-eCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCC-----CcEEEEEc-CCc-EEEEecCCC
Q 010784 314 CHESMLYIA-SGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPS-----KSLICTGG-IGK-AMTWDIRRS 376 (501)
Q Consensus 314 ~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~~~-~d~-i~iwd~~~~ 376 (501)
..++...++ .+.+|.+||+++.+.+.+|.+|.++|.++.|.-+ |.++.++. .+. +.+|-....
T Consensus 152 is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 152 ISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 555554444 4569999999999999999999999999999876 77777766 344 888877663
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1e-08 Score=98.84 Aligned_cols=230 Identities=12% Similarity=0.036 Sum_probs=132.4
Q ss_pred eEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec-CCceeeeccCCCCc
Q 010784 133 NIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW-KGSCQRCFKGHNGP 208 (501)
Q Consensus 133 ~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd-~~~~~~~~~~h~~~ 208 (501)
.+.++|... ...+.+..+...+....|+| +|+.|+..+.+ ..|.+|| .+.....+....+.
T Consensus 180 ~l~~~d~~g--~~~~~l~~~~~~~~~p~wSp-------------DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDG--ARAVTLLQSREPILSPRWSP-------------DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL 244 (430)
T ss_pred EEEEECCCC--CCceEEecCCCceeeeeECC-------------CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC
Confidence 466667663 33455667778899999999 78888776543 3577788 32233333333445
Q ss_pred eEEEEeeecCCCCCCEEE-EeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCC--e
Q 010784 209 VSTLSDKLLGDGSGKILA-SGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDS--K 282 (501)
Q Consensus 209 v~~l~~s~~~~~~~~~l~-sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg--~ 282 (501)
+....|+ |+|+.|+ +.+.+| .|.++|+.++. ...+..+........|+| +++.++..+ .+| .
T Consensus 245 ~~~~~~S----pDG~~la~~~~~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~ 312 (430)
T PRK00178 245 NGAPAWS----PDGSKLAFVLSKDGNPEIYVMDLASRQ-------LSRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQ 312 (430)
T ss_pred cCCeEEC----CCCCEEEEEEccCCCceEEEEECCCCC-------eEEcccCCCCcCCeEECC-CCCEEEEEECCCCCce
Confidence 5568887 7888776 455555 57888888765 233444555566678998 555554444 333 4
Q ss_pred EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEE
Q 010784 283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICT 362 (501)
Q Consensus 283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 362 (501)
|.++|+.+++... .... ........|+|+|+.++.
T Consensus 313 iy~~d~~~g~~~~-------------------------------------------lt~~--~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 313 IYKVNVNGGRAER-------------------------------------------VTFV--GNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCEEE-------------------------------------------eecC--CCCccceEECCCCCEEEE
Confidence 5566665543210 0011 112234679999998877
Q ss_pred EcC-C--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecCCC--cEEEEeCCCcccccccccCCC
Q 010784 363 GGI-G--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRDDL--RINIWETDTGMLANSLLCNYP 434 (501)
Q Consensus 363 ~~~-d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~dg--~i~iwd~~~~~~~~~~~~~~~ 434 (501)
.+. + . |.++|+.+++.. .+.. ........|+|+ +.++ +...+| .|.++++. +.....+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~-------~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~---- 414 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVR-------ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP---- 414 (430)
T ss_pred EEccCCceEEEEEECCCCCEE-------EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc----
Confidence 662 2 2 888998876532 1211 112224579998 4444 433333 46666764 44444442
Q ss_pred CCCCcceeeeEeec
Q 010784 435 EEADISTGCSAMAV 448 (501)
Q Consensus 435 ~~~~~~v~~~~~s~ 448 (501)
.+.+.+...+|+|
T Consensus 415 -~~~g~~~~p~ws~ 427 (430)
T PRK00178 415 -TAQGEVREPSWSP 427 (430)
T ss_pred -CCCCCcCCCccCC
Confidence 1233455566765
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.5e-09 Score=99.86 Aligned_cols=189 Identities=11% Similarity=0.070 Sum_probs=141.1
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce--ee------------------ecCCCeEEEEeC-CcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV--DM------------------KCHESMLYIASG-SSV 327 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~-~~i 327 (501)
+...+++....||.+++||...++....+.........+... .+ +.....+++.+. +.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 356789999999999999999887655443333221111111 11 111122333333 489
Q ss_pred EEEEcCCCceEeeec--cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784 328 VTIDLRTMQKVMTPA--ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 328 ~~~d~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 403 (501)
.+|+...++....+. .|.+.|.++.++.+-..|.+++.|. +..|+....... ...+.-...+.+++++|+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~------~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII------RIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee------eeeccCCCccceEEEcCCC
Confidence 999999999887776 5889999999999988999999998 999999986544 777777888999999999
Q ss_pred eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc-----ccEEEEeecCCCceEEEeeccC
Q 010784 404 KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS-----GCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
.+++++ .+.|++||+++++.+.+| .+|.++|.+++|-.+ |.++.++.. ...-+.+|-+..
T Consensus 157 ~~l~~a--s~~ik~~~~~~kevv~~f-----tgh~s~v~t~~f~~~~~g~~G~~vLssa~-~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KILLTA--SRQIKVLDIETKEVVITF-----TGHGSPVRTLSFTTLIDGIIGKYVLSSAA-AERGITVWVVEK 221 (541)
T ss_pred CEEEec--cceEEEEEccCceEEEEe-----cCCCcceEEEEEEEeccccccceeeeccc-cccceeEEEEEc
Confidence 888875 468999999999999999 788999999999987 777776543 455666776443
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=5.4e-10 Score=105.06 Aligned_cols=204 Identities=17% Similarity=0.279 Sum_probs=139.9
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEe-c-CCceeeeccCC-CCceEEEEeeecCCCCCCEEEEeeC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLW-W-KGSCQRCFKGH-NGPVSTLSDKLLGDGSGKILASGGE 230 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vw-d-~~~~~~~~~~h-~~~v~~l~~s~~~~~~~~~l~sg~~ 230 (501)
+++.++..+| .|+-++.++.-|-+.+= | .....+-+..- .-.|-.+.|++.+. ....+++- .
T Consensus 25 ~~~~a~si~p-------------~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a-~~~wiVst-s 89 (1081)
T KOG0309|consen 25 GGFNAVSINP-------------SGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPA-KPYWIVST-S 89 (1081)
T ss_pred Ccccceeecc-------------ccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCC-CceeEEec-C
Confidence 4566777777 78888888877754332 2 33333333211 12456677875432 22344444 4
Q ss_pred CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV 310 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 310 (501)
...-.+|++..... ......+.+|...|+.+.|.+.....+++++.|..+..||+++....
T Consensus 90 ~qkaiiwnlA~ss~---~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p---------------- 150 (1081)
T KOG0309|consen 90 NQKAIIWNLAKSSS---NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP---------------- 150 (1081)
T ss_pred cchhhhhhhhcCCc---cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc----------------
Confidence 45567899875432 22455678999999999999999999999999999999999876321
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD 389 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 389 (501)
+..+..-......+.|+...-.+.+.+.++ |++||++.+. .++..++
T Consensus 151 ---------------------------~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-----~pl~s~K 198 (1081)
T KOG0309|consen 151 ---------------------------FYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-----TPLCSLK 198 (1081)
T ss_pred ---------------------------eeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-----cceEEec
Confidence 111111233345678876554555566666 9999999985 4578899
Q ss_pred CcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784 390 GHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 390 ~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~ 423 (501)
+|...|+.++|... ..+.+++.||+|++||.+..
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 99999999999876 55666689999999998753
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=4.4e-08 Score=103.04 Aligned_cols=255 Identities=9% Similarity=0.070 Sum_probs=152.4
Q ss_pred cCcEEEEeeCCCceEEec-CCceeeeccC--C------------CCceEEEEeeecCCCCCCEEEEee-CCCcEEEEecc
Q 010784 177 TENVLVTSSCDHSIRLWW-KGSCQRCFKG--H------------NGPVSTLSDKLLGDGSGKILASGG-EDATVRLWSLS 240 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~~--h------------~~~v~~l~~s~~~~~~~~~l~sg~-~dg~i~iwd~~ 240 (501)
+++++++-+.++.|+++| .+..+..+.. . -..-..+++. ++++.|+.+. .++.|+++|+.
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd----~~gn~LYVaDt~n~~Ir~id~~ 654 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN----AKKNLLYVADTENHALREIDFV 654 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe----CCCCEEEEEeCCCceEEEEecC
Confidence 467888888889999999 6655444322 1 1124677774 6667655554 45789999987
Q ss_pred CCCccccccceeeccCC-----------------CCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce
Q 010784 241 SSGKRGQQALKATLYGH-----------------EKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT 303 (501)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-----------------~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 303 (501)
++. +.++.+. -..-..++++|.++.++++.+.++.|++||..++....
T Consensus 655 ~~~-------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-------- 719 (1057)
T PLN02919 655 NET-------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-------- 719 (1057)
T ss_pred CCE-------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE--------
Confidence 653 2222110 01235789988677788888889999999987763210
Q ss_pred ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEE-EEcCCc-EEEEecCCCCCCC-
Q 010784 304 SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLIC-TGGIGK-AMTWDIRRSQDAV- 380 (501)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~d~-i~iwd~~~~~~~~- 380 (501)
++..+..... .+... ....-.....++++|++..|+ +.+.++ |++||+.++....
T Consensus 720 -----------------~~G~G~~~~~---~g~~~--~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 720 -----------------FSGDGYERNL---NGSSG--TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred -----------------EecCCccccC---CCCcc--ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 0000000000 00000 000113356799999987444 444555 9999988654210
Q ss_pred -C-----CCCcccccC--------cccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCC--------CCCC
Q 010784 381 -K-----PQPMAELDG--------HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNY--------PEEA 437 (501)
Q Consensus 381 -~-----~~~~~~~~~--------h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~--------~~~~ 437 (501)
. ......+.. .-.....++++++ .++++-+.+++|++||..++........+. ....
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 0 000011110 1113468899998 888888899999999998776543321110 0112
Q ss_pred CcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 438 DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 438 ~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
-.....++++++|+.+++-+ .++.|++||+..+..
T Consensus 858 l~~P~GIavd~dG~lyVaDt--~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADT--NNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEEC--CCCEEEEEECCCCcc
Confidence 23567899999999888776 679999999987653
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=2.8e-08 Score=94.71 Aligned_cols=238 Identities=11% Similarity=0.019 Sum_probs=133.3
Q ss_pred ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCE---EEEeeCCC--cEEEEeccCCCccccccceeeccCCCCcee
Q 010784 189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKI---LASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~---l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
.|.+.| .|...+.+......+.+-+|+ |+|+. +++...+| .|.+.++.+++. ..+....+...
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wS----PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-------~~lt~~~g~~~ 234 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWM----HIGSGFPYLYVSYKLGVPKIFLGSLENPAG-------KKILALQGNQL 234 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEc----cCCCceEEEEEEccCCCceEEEEECCCCCc-------eEeecCCCCcc
Confidence 566667 555555565556666777887 78764 33444444 577778877653 22222333444
Q ss_pred EEEEeecCCeEEEEEe-CCC----eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 263 LMSVAGHKSFLLVTIS-KDS----KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s-~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
..+|+| +++.|+..+ .+| .+..|++..+.. ++.
T Consensus 235 ~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~-----------------------------------------g~~ 272 (428)
T PRK01029 235 MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAI-----------------------------------------GKP 272 (428)
T ss_pred ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCC-----------------------------------------Ccc
Confidence 678998 565555544 223 233345443210 011
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEE--ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEE-EecC
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTW--DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVT-GGRD 411 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iw--d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~-~gs~ 411 (501)
..............+|+|||+.|+..+ .++ ..+| ++..... ....+..+...+....|+|+ +.++ ++..
T Consensus 273 ~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~-----~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 273 RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ-----SPRLLTKKYRNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-----ceEEeccCCCCccceeECCCCCEEEEEEcC
Confidence 111111122345679999999877665 334 4444 4432111 01333334456678899999 5444 4333
Q ss_pred C--CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec-CCCceEEEeeccCCcccee-ecCCCCceee
Q 010784 412 D--LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY-GEPGLLQFRDFSNATCPVL-KHEVQNDSKF 487 (501)
Q Consensus 412 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~g~i~~w~~~~~~~~~~-s~~~d~~~~~ 487 (501)
+ ..|.+||+.+++...... ....+....|+|||++|+..+. .....|+++++..+....+ .+..+.....
T Consensus 348 ~g~~~I~v~dl~~g~~~~Lt~------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~ 421 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQLTT------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPS 421 (428)
T ss_pred CCCcEEEEEECCCCCeEEccC------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCce
Confidence 2 469999998887543321 1234567899999998875443 2346788899887765444 3434444566
Q ss_pred ecc
Q 010784 488 WGP 490 (501)
Q Consensus 488 w~~ 490 (501)
|.+
T Consensus 422 Ws~ 424 (428)
T PRK01029 422 WGA 424 (428)
T ss_pred ecC
Confidence 754
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=2.3e-07 Score=84.10 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=153.9
Q ss_pred CceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC----------CCcEEEEeccCCCccccccceeecc
Q 010784 188 HSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE----------DATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 188 g~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
++|.+.| +++.+.++..-..+-. + ++ ++++.|+.+.. +..|.+||..+.+. +..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~s----pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~------~~~i~ 94 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VA----SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP------IADIE 94 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-EC----CCCCEEEEEeccccccccCCCCCEEEEEECccCcE------EeEEc
Confidence 8899999 6666777664333332 3 54 78888877765 78999999999874 44443
Q ss_pred CC-------CCceeEEEEeecCCeEEEEEe-C-CCeEEEEECCCCccccceecccceecCCCceeeecCCC-eEEEEeCC
Q 010784 256 GH-------EKPIKLMSVAGHKSFLLVTIS-K-DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES-MLYIASGS 325 (501)
Q Consensus 256 ~~-------~~~v~~l~~~~~~~~~l~s~s-~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 325 (501)
.- ...-..++++| ++++++... . +..|.+.|+.+++.+..... ++...-+...+. ....+.++
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~e~~~~~~~~Dg 167 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTANDTFFMHCRDG 167 (352)
T ss_pred cCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEecCCccEEEeecC
Confidence 21 11233678887 666666554 3 78999999999976654432 222222222222 22222222
Q ss_pred cEEEEEcC-CCce-Eee---eccCCCcEE-EEEEcC-CCcEEEEEcCCcEEEEecCCCCCCCCCCCccccc-------Cc
Q 010784 326 SVVTIDLR-TMQK-VMT---PAICKPILH-SFSIMP-SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELD-------GH 391 (501)
Q Consensus 326 ~i~~~d~~-~~~~-~~~---~~~~~~~v~-~v~~~~-~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~-------~h 391 (501)
......+. +++. ... +.....++. .-.+.+ +|+++....++.|.+.|+...+... ...+..+. -.
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~-~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKF-LPAIEAFTEAEKADGWR 246 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCccee-cceeeeccccccccccC
Confidence 22222111 1111 111 111001100 003455 8888888888559999975543220 11112111 12
Q ss_pred ccCeEEEEecCC--eEEEEe-c--------CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc-EEEEeecC
Q 010784 392 VGSVTQLHMDPY--KIVTGG-R--------DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC-RIVTASYG 459 (501)
Q Consensus 392 ~~~v~~l~~~~~--~~l~~g-s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d 459 (501)
.+.+.-++++|+ ++++.. . ..+.|.++|..+++.+..+.. ...+..++++|||+ +|++...
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------G~~~~~iavS~Dgkp~lyvtn~- 319 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL------GHEIDSINVSQDAKPLLYALST- 319 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC------CCceeeEEECCCCCeEEEEeCC-
Confidence 334455999988 555532 1 225799999999999999853 34688999999999 7776653
Q ss_pred CCceEEEeeccCCcc
Q 010784 460 EPGLLQFRDFSNATC 474 (501)
Q Consensus 460 ~~g~i~~w~~~~~~~ 474 (501)
.++.|.+.|..++..
T Consensus 320 ~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 320 GDKTLYIFDAETGKE 334 (352)
T ss_pred CCCcEEEEECcCCeE
Confidence 468899999887754
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.13 E-value=1.7e-08 Score=83.89 Aligned_cols=201 Identities=11% Similarity=0.010 Sum_probs=136.1
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
.-.+|+.|+.-|...+|...+.+. ..+....|...|+-+.-.......+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~-----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------ 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG-----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------ 151 (344)
T ss_pred cccEEEeccccceeeeecccCccc-----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc------
Confidence 345899999999999999997664 444445555544332211122335667788888888887655321
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCC--cEEEEEEcCCCcEEEEEcCCc-EEEEecCCCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKP--ILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQ 377 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~ 377 (501)
+..|.. .+.++++++|++++++.++.. |..|.+....
T Consensus 152 ----------------------------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 152 ----------------------------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred ----------------------------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 111222 278899999999999999888 9999987654
Q ss_pred CCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc--EEE
Q 010784 378 DAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC--RIV 454 (501)
Q Consensus 378 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~ 454 (501)
.. ... ......+..-.+..|+.. ..+|+++.||++.|||++...............|.+++..+.|++-|. +|+
T Consensus 192 ey--~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf 268 (344)
T KOG4532|consen 192 EY--IEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLF 268 (344)
T ss_pred ce--eee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEE
Confidence 32 011 122333445567788888 888888999999999999854433333333345899999999998663 444
Q ss_pred EeecCCCceEEEeeccCCcccee
Q 010784 455 TASYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 455 s~~~d~~g~i~~w~~~~~~~~~~ 477 (501)
..- +-+.+.+.|..+....-.
T Consensus 269 ~sE--hfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 269 ISE--HFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred Eec--CcceEEEEEcccCceeeE
Confidence 443 568999999988776433
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=1.6e-09 Score=95.08 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=72.0
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCCeEEEEecCCCcEEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPYKIVTGGRDDLRINI 417 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~l~~gs~dg~i~i 417 (501)
.+-+|-..++.++++||+++|+++..|. ||+-.......+ ..+ -||..-|..++.-+++.|.+||.|++|++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I------esfclGH~eFVS~isl~~~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI------ESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRL 219 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch------hhhccccHhheeeeeeccCceeeecCCCCcEEE
Confidence 3456889999999999999999999888 999887764332 444 47999999999999977888889999999
Q ss_pred EeCCCcccccccc
Q 010784 418 WETDTGMLANSLL 430 (501)
Q Consensus 418 wd~~~~~~~~~~~ 430 (501)
||+.+|+.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999988773
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=1.2e-09 Score=102.73 Aligned_cols=286 Identities=12% Similarity=0.095 Sum_probs=182.4
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCc--ceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKA--RITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~--~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
...+.+.+.++|.|+-+|.++.-|.+.+ |+.......+.+ .|.. .|-.+.|+|.. ...+-+....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l-~h~tpw~vad~qws~h~-----------a~~~wiVsts 89 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWL-HHITPWQVADVQWSPHP-----------AKPYWIVSTS 89 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEE-eccCCCCCceee-eccCcchhcceecccCC-----------CCceeEEecC
Confidence 3456899999999999999998776554 444323333333 2322 37788898832 3344444444
Q ss_pred CCceEEec-----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 187 DHSIRLWW-----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 187 dg~i~vwd-----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
...-.+|+ .......+.+|...|+.+.|.+ .....+++++.|-.+..||+++... ++.....-...-
T Consensus 90 ~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~---q~pdVlatcsvdt~vh~wd~rSp~~-----p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 90 NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNP---QHPDVLATCSVDTYVHAWDMRSPHR-----PFYSTSSWRSAA 161 (1081)
T ss_pred cchhhhhhhhcCCccceEEEEecCccceeccccCC---CCCcceeeccccccceeeeccCCCc-----ceeeeecccccC
Confidence 45566887 3344456789999999999984 5567999999999999999998765 555555555556
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
..++|+..+++.+++ +....|.+||.+.+. .++..+
T Consensus 162 sqVkwnyk~p~vlas-shg~~i~vwd~r~gs-------------------------------------------~pl~s~ 197 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLAS-SHGNDIFVWDLRKGS-------------------------------------------TPLCSL 197 (1081)
T ss_pred ceeeecccCcchhhh-ccCCceEEEeccCCC-------------------------------------------cceEEe
Confidence 778998766766554 556779999998773 234456
Q ss_pred ccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEE
Q 010784 342 AICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRIN 416 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~ 416 (501)
++|...|+++.|..- ...+.+.+.|+ |+.||..+.... .-.. .....+|..-.+-|- .++.-.-.+..+.
T Consensus 198 K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e----~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~ 272 (1081)
T KOG0309|consen 198 KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE----SKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP 272 (1081)
T ss_pred cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc----ccee-ccccCcceeccccccCceeEeccccCCeeee
Confidence 668888888888764 44566667677 999999875432 1111 112344555555553 2221111122333
Q ss_pred E---------EeCCC-cccccccccCCCCCCCcceeeeEeecccc----------EEEEeecCCCceEEEeeccC
Q 010784 417 I---------WETDT-GMLANSLLCNYPEEADISTGCSAMAVSGC----------RIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 417 i---------wd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~----------~l~s~~~d~~g~i~~w~~~~ 471 (501)
+ |++.+ .+.+.+| .+|...|....|-..+. .|++=+ .|..+++|-+..
T Consensus 273 ~~~c~n~d~e~n~~~~~~pVh~F-----~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS--kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 273 QLRCENSDLEWNVFDLNTPVHTF-----VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS--KDQTLRLWPIDS 340 (1081)
T ss_pred eccccchhhhhccccCCcceeee-----cCcchHHHHHhhhhcccccCCCCccceeEEEee--cCCceEeeeccH
Confidence 3 33333 3566777 56777776665543222 566666 558888887654
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=1.6e-09 Score=94.98 Aligned_cols=159 Identities=13% Similarity=0.175 Sum_probs=110.2
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccc---cceeccc--CCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESY---YRATLSD--HKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~---~~~~~~~--h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
+..+..++++.++|++..+....+++.....+ +...... ....+..+.... .......++..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~-------------sv~v~dkagD~ 131 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDT-------------SVLVADKAGDV 131 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccc-------------eEEEEeecCCc
Confidence 55667789999999998888877777664322 2222211 122233333222 22333334445
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEE
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 266 (501)
..+.+|+ ...+....-+|-..++.++|+ +|+++++++..|..|++-.....-. .-....||+.-|..+++
T Consensus 132 ~~~di~s~~~~~~~~~lGhvSml~dVavS----~D~~~IitaDRDEkIRvs~ypa~f~-----IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPILGHVSMLLDVAVS----PDDQFIITADRDEKIRVSRYPATFV-----IESFCLGHKEFVSTISL 202 (390)
T ss_pred eeeeeecccccCcchhhhhhhhhheeeec----CCCCEEEEecCCceEEEEecCcccc-----hhhhccccHhheeeeee
Confidence 5566665 224445566899999999998 8999999999999999988765432 22344679999999999
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSSAVR 295 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 295 (501)
. ++..|++||.|++|++||+++++.+.
T Consensus 203 ~--~~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 203 T--DNYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred c--cCceeeecCCCCcEEEEecccCCccc
Confidence 7 45569999999999999999998764
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.07 E-value=1.5e-07 Score=89.27 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=150.9
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
.++.++.++.+|.|..+| +|+.+-.+........... .++..++.++.+|.+..+|..+++. +...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~------v~~~~v~v~~~~g~l~ald~~tG~~------~W~~ 131 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG------ADGGLVFVGTEKGEVIALDAEDGKE------LWRA 131 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE------EcCCEEEEEcCCCEEEEEECCCCcE------eeee
Confidence 456888888899999998 6776655443332222222 2456788888999999999988874 2222
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCeEEEEeC-CcEEEEEc
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESMLYIASG-SSVVTIDL 332 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~ 332 (501)
.. ...+.+.... .+..++.++.+|.|..+|.++++.+......... ..... ......++.+++... +.+..+|.
T Consensus 132 ~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~-~sp~~~~~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 132 KL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS-ASPVIADGGVLVGFAGGKLVALDL 207 (377)
T ss_pred cc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC-CCCEEECCEEEEECCCCEEEEEEc
Confidence 21 1222211111 2335677788999999999998765443321110 00000 011112234444443 58999999
Q ss_pred CCCceEeeeccCCC----c---EEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 333 RTMQKVMTPAICKP----I---LHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 333 ~~~~~~~~~~~~~~----~---v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
++++.+........ . ...+.-+| .+..++.++.++ ++.+|..+++.. ..... ..........
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~------W~~~~--~~~~~p~~~~ 279 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL------WKRDA--SSYQGPAVDD 279 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE------Eeecc--CCccCceEeC
Confidence 99987755432100 0 00111111 244566666566 999999987654 22221 1122233334
Q ss_pred CeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 403 YKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 403 ~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
+.+++. +.||.+..+|..+|+.+-..... . ......... .+..|++++ .+|.|+++|..+++.
T Consensus 280 ~~vyv~-~~~G~l~~~d~~tG~~~W~~~~~--~--~~~~ssp~i--~g~~l~~~~--~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 280 NRLYVT-DADGVVVALDRRSGSELWKNDEL--K--YRQLTAPAV--VGGYLVVGD--FEGYLHWLSREDGSF 342 (377)
T ss_pred CEEEEE-CCCCeEEEEECCCCcEEEccccc--c--CCccccCEE--ECCEEEEEe--CCCEEEEEECCCCCE
Confidence 455554 58999999999999877554210 0 111112122 466888887 669999999776554
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=1.5e-07 Score=99.02 Aligned_cols=271 Identities=11% Similarity=0.081 Sum_probs=155.4
Q ss_pred CceEEeeC-CcEEEeecCCeeeEEEEecccccccceeccc--C------------CcceeEEEeeccCcCcccccCCCCc
Q 010784 113 HDHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSD--H------------KARITCMRLFPLHETSLFRSEPQRT 177 (501)
Q Consensus 113 i~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~--h------------~~~V~~~~~~~~~~~~~~~~~~~~~ 177 (501)
...+++++ ++.++++-...+.|.++|... ..+..+.+ . -..-..+++.+ +
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-------------~ 634 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-------------K 634 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-------------C
Confidence 45688986 577888888889999999763 33333322 1 12246677776 6
Q ss_pred CcEEEEe-eCCCceEEec-CCceeeeccCC-----------------CCceEEEEeeecCCC-CCCEEEEeeCCCcEEEE
Q 010784 178 ENVLVTS-SCDHSIRLWW-KGSCQRCFKGH-----------------NGPVSTLSDKLLGDG-SGKILASGGEDATVRLW 237 (501)
Q Consensus 178 ~~~l~s~-~~dg~i~vwd-~~~~~~~~~~h-----------------~~~v~~l~~s~~~~~-~~~~l~sg~~dg~i~iw 237 (501)
++.|+.+ ...+.|+++| ....+.++.+- -..-..++|+ + ++.++++.+.++.|++|
T Consensus 635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d----p~~g~LyVad~~~~~I~v~ 710 (1057)
T PLN02919 635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE----PVNEKVYIAMAGQHQIWEY 710 (1057)
T ss_pred CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe----cCCCeEEEEECCCCeEEEE
Confidence 6655444 4457799888 44445444221 0122467886 5 56677777788999999
Q ss_pred eccCCCccccc--cceeeccC------CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCc
Q 010784 238 SLSSSGKRGQQ--ALKATLYG------HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVP 309 (501)
Q Consensus 238 d~~~~~~~~~~--~~~~~~~~------~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 309 (501)
|..++...... .......+ .-.....|+++|+++.++++-+.++.|++||+.++..... . .+..
T Consensus 711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~---~-----gg~~ 782 (1057)
T PLN02919 711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL---A-----GGDP 782 (1057)
T ss_pred ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE---E-----eccc
Confidence 98765320000 00000011 1123457899985455777777889999999987632100 0 0000
Q ss_pred eeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCC---CCC-
Q 010784 310 VDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVK---PQP- 384 (501)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~---~~~- 384 (501)
. . +.. ...+.+.. +... ...-.....++++++|+++++-+.+. |++||..++..... ...
T Consensus 783 ~---~-~~~-------l~~fG~~d-G~g~---~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G 847 (1057)
T PLN02919 783 T---F-SDN-------LFKFGDHD-GVGS---EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG 847 (1057)
T ss_pred c---c-Ccc-------cccccCCC-Cchh---hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC
Confidence 0 0 000 00000000 0000 00111235789999999888888777 99999987543200 000
Q ss_pred ---cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 385 ---MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 385 ---~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
-....+.-.....++++++ +++++-+.++.|++||+.+++.
T Consensus 848 ~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 848 FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 0001112235778999999 8888888999999999998765
No 278
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=99.06 E-value=1.6e-10 Score=72.61 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=40.6
Q ss_pred ccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHh
Q 010784 19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFR 65 (501)
Q Consensus 19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~ 65 (501)
.+.+||+|++.+||.||+..++.++++||+.|++++.+..+|...+|
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 46789999999999999999999999999999999999999998764
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.05 E-value=7.3e-09 Score=85.56 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=106.6
Q ss_pred EEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 106 FYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 106 ~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
+..+..+-.+=+.+-.+.-+++|..||.+.+.+.+...+..+.+..-...-.+..... .++.+.++.
T Consensus 85 ~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~-------------~~~~i~s~~ 151 (319)
T KOG4714|consen 85 LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR-------------HGNSILSGG 151 (319)
T ss_pred eeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceee-------------cccEEecCC
Confidence 3344444444455555677899999999999997743222222221111122223333 355555544
Q ss_pred CCCce------EEecCCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC
Q 010784 186 CDHSI------RLWWKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 186 ~dg~i------~vwd~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
-|.+ +.|+ ...+.++. .....|++++-+| ...+++++|+.||.+-+||.+.... +...++.
T Consensus 152 -~g~~n~~d~~~a~~-~~p~~t~~~~~~~~~~v~~l~~hp---~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~a 221 (319)
T KOG4714|consen 152 -CGNWNAQDNFYANT-LDPIKTLIPSKKALDAVTALCSHP---AQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKA 221 (319)
T ss_pred -cceEeeccceeeec-ccccccccccccccccchhhhCCc---ccccEEEEecCCCeEEEEEcccccc-----hHHHHHH
Confidence 3333 3444 11222221 1223488888774 4456888999999999999998765 6778899
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST 290 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~ 290 (501)
|..++..+-|+|.++..|+++++||.+.-||..+
T Consensus 222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999999999999999999999999875
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=4.6e-08 Score=81.31 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=152.5
Q ss_pred CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce
Q 010784 120 NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC 198 (501)
Q Consensus 120 ~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~ 198 (501)
.+-.+||.|+..|...+|...+.....+....|...|+-+.=.-+ ....+..++.|.++++.+ .+..
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd------------~~~~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCD------------LKFPLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcc------------cccceeeccCCcceeEEEEecCc
Confidence 456789999999999999988754444444455554432221110 223466677888888887 3322
Q ss_pred eeeccCCCCc--eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccccee-eccCCCCceeEEEEeecCCeEEE
Q 010784 199 QRCFKGHNGP--VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKA-TLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 199 ~~~~~~h~~~--v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
.+. ..|... +.+++++ +++.++++.+....|-.|.++.... .... .....+..-.+..|+. ....++
T Consensus 150 ~~~-~~h~~~~~~ns~~~s----nd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~~S~s~-~~~~FA 219 (344)
T KOG4532|consen 150 NKF-AVHNQNLTQNSLHYS----NDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFYNSFSE-NDLQFA 219 (344)
T ss_pred ccc-eeeccccceeeeEEc----CCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCceeeeecc-CcceEE
Confidence 222 224333 7778876 8999999999999999999987653 1122 2333344445678885 677899
Q ss_pred EEeCCCeEEEEECCCCccccceecccceecCCCceeeecCC----CeEEEEeC-CcEEEEEcCCCceEeeecc-------
Q 010784 276 TISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE----SMLYIASG-SSVVTIDLRTMQKVMTPAI------- 343 (501)
Q Consensus 276 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~i~~~d~~~~~~~~~~~~------- 343 (501)
++..||++.|||++...............+.+....+.++. +.+++..+ +.+.+.|++++.....+..
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~ 299 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERK 299 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccc
Confidence 99999999999999875544333333445677777776663 23333333 4899999999876544432
Q ss_pred CCC-cEEEEEEcCCCcEEEEEcCCcEEEEecCCC
Q 010784 344 CKP-ILHSFSIMPSKSLICTGGIGKAMTWDIRRS 376 (501)
Q Consensus 344 ~~~-~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~ 376 (501)
|.. .|..-.|+.++.-+.+.+++.+.-|++.+.
T Consensus 300 ~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 300 HNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred ccccccccccccCCCcccccccchhhheeecccc
Confidence 222 267777777777777777666666766653
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.03 E-value=1.6e-06 Score=78.74 Aligned_cols=260 Identities=8% Similarity=-0.005 Sum_probs=156.4
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC----------CCceEEec--CCcee
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC----------DHSIRLWW--KGSCQ 199 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----------dg~i~vwd--~~~~~ 199 (501)
+.+.+.|..+. +.+.++..-..+-. + ++| |++.|+.+.. +..|.+|| +.+.+
T Consensus 27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~sp-------------Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VAS-------------DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred ceEEEEECCCC-EEEEEEEccCCCce-e-ECC-------------CCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 88999999884 66666654333322 4 788 7777766655 78999999 67777
Q ss_pred eeccCCCC-------ceEEEEeeecCCCCCCEEEEee-C-CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784 200 RCFKGHNG-------PVSTLSDKLLGDGSGKILASGG-E-DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 200 ~~~~~h~~-------~v~~l~~s~~~~~~~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 270 (501)
..+..... .-..++++ ++|++|+... . +..|.+.|+.+++. +..+.- .+...-...+ +
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls----~dgk~l~V~n~~p~~~V~VvD~~~~kv------v~ei~v-p~~~~vy~t~--e 157 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLT----PDNKTLLFYQFSPSPAVGVVDLEGKAF------VRMMDV-PDCYHIFPTA--N 157 (352)
T ss_pred eEEccCCCchhhccCccceEEEC----CCCCEEEEecCCCCCEEEEEECCCCcE------EEEEeC-CCCcEEEEec--C
Confidence 66653211 22356665 8999988766 3 68999999999873 444443 1121111221 1
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceecccce-----ecCCCceeeecCCCeEEEEeCCcEEEEEcCCC-----ceEee
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-----SVPGVPVDMKCHESMLYIASGSSVVTIDLRTM-----QKVMT 340 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~ 340 (501)
.. +..-+.||......+.+...... .....+ .....+.-...++..++++..+.+.+.|+... +....
T Consensus 158 ~~-~~~~~~Dg~~~~v~~d~~g~~~~-~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 158 DT-FFMHCRDGSLAKVGYGTKGNPKI-KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred Cc-cEEEeecCceEEEEecCCCceEE-eeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeee
Confidence 21 22333455555443332211110 000000 00011211222566777777889999995433 22222
Q ss_pred ecc-------CCCcEEEEEEcCCCcEEEEEc----------CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecC
Q 010784 341 PAI-------CKPILHSFSIMPSKSLICTGG----------IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDP 402 (501)
Q Consensus 341 ~~~-------~~~~v~~v~~~~~~~~l~~~~----------~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 402 (501)
+.. ..+.+.-++++++++.++... .++ |.++|..+.+.+ ..+.. ...+..++++|
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi------~~i~v-G~~~~~iavS~ 308 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL------RKIEL-GHEIDSINVSQ 308 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE------EEEeC-CCceeeEEECC
Confidence 211 233445599999988877742 224 999999987654 55543 45789999999
Q ss_pred C-e-EEEEec-CCCcEEEEeCCCccccccc
Q 010784 403 Y-K-IVTGGR-DDLRINIWETDTGMLANSL 429 (501)
Q Consensus 403 ~-~-~l~~gs-~dg~i~iwd~~~~~~~~~~ 429 (501)
+ + ++.+.. .++.|.++|..+++.+.++
T Consensus 309 Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 309 DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9 5 555433 6788999999999999888
No 282
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.9e-07 Score=89.08 Aligned_cols=242 Identities=10% Similarity=-0.006 Sum_probs=131.3
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE---EEEeeCCCceEEe--c-CCceeeeccCC
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV---LVTSSCDHSIRLW--W-KGSCQRCFKGH 205 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~---l~s~~~dg~i~vw--d-~~~~~~~~~~h 205 (501)
..+.+.|... .-.+.+......+..-+|+| ||+. +++...+|.-.|| + .+.....+...
T Consensus 165 ~~l~~~d~dG--~~~~~lt~~~~~~~sP~wSP-------------DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~ 229 (428)
T PRK01029 165 GELWSVDYDG--QNLRPLTQEHSLSITPTWMH-------------IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL 229 (428)
T ss_pred ceEEEEcCCC--CCceEcccCCCCcccceEcc-------------CCCceEEEEEEccCCCceEEEEECCCCCceEeecC
Confidence 3566666653 33344555566677788998 6653 2345555554444 5 33333333333
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeC-CC----cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-C
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGE-DA----TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-K 279 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~ 279 (501)
.+.....+|+ |+|+.|+..+. +| .+..|++..+... ........+.......+|+| +++.|+..+ .
T Consensus 230 ~g~~~~p~wS----PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g---~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~ 301 (428)
T PRK01029 230 QGNQLMPTFS----PRKKLLAFISDRYGNPDLFIQSFSLETGAIG---KPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNK 301 (428)
T ss_pred CCCccceEEC----CCCCEEEEEECCCCCcceeEEEeecccCCCC---cceEeecCCCCCcCCeEECC-CCCEEEEEECC
Confidence 4445567887 89988776542 22 3444676653110 01222222223445678998 666555544 4
Q ss_pred CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcE
Q 010784 280 DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSL 359 (501)
Q Consensus 280 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 359 (501)
+|...+|.+.... .+.....+..+...+....|+|||+.
T Consensus 302 ~g~~~ly~~~~~~-----------------------------------------~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 302 DGRPRIYIMQIDP-----------------------------------------EGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred CCCceEEEEECcc-----------------------------------------cccceEEeccCCCCccceeECCCCCE
Confidence 5654444332100 00001122223345667899999998
Q ss_pred EEEEcC--C-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEE-EEecC--CCcEEEEeCCCccccccccc
Q 010784 360 ICTGGI--G-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIV-TGGRD--DLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 360 l~~~~~--d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l-~~gs~--dg~i~iwd~~~~~~~~~~~~ 431 (501)
|+..+. + . |.+||+.+++. ..+......+....|+|+ +.+ .++.. ...|.++|+.+++......
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~-------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~- 412 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRD-------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI- 412 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCe-------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-
Confidence 886652 2 3 99999988753 223222345677899999 444 44332 3568888988776543331
Q ss_pred CCCCCCCcceeeeEeeccc
Q 010784 432 NYPEEADISTGCSAMAVSG 450 (501)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~g 450 (501)
....+...+|+|-.
T Consensus 413 -----~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -----GSGEKRFPSWGAFP 426 (428)
T ss_pred -----CCCcccCceecCCC
Confidence 12335566777643
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.7e-07 Score=89.32 Aligned_cols=327 Identities=12% Similarity=0.066 Sum_probs=187.8
Q ss_pred CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEec--CCc
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLWW--KGS 197 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vwd--~~~ 197 (501)
....+|++...|.|.+||...+ ..+..+..|.++|..+.|-+.- .+. ..|+.-....++.+|| +|+
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~r----------d~Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPAR----------DDSRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred cceeEEeccccCcEEEEEehhh-hhhhhhcCCCcchhheeeeecc----------CcchheeEEecCCcEEEEEEccCCc
Confidence 4567899999999999999985 6777889999999999998732 133 5666666678999997 776
Q ss_pred eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEec---------------cCCCc------------------
Q 010784 198 CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSL---------------SSSGK------------------ 244 (501)
Q Consensus 198 ~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~---------------~~~~~------------------ 244 (501)
..-..........|+.+-|+ +.+.+..-+..|.+.+-+. .+...
T Consensus 147 k~Wk~~ys~~iLs~f~~DPf---d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~ 223 (1062)
T KOG1912|consen 147 KFWKYDYSHEILSCFRVDPF---DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTST 223 (1062)
T ss_pred eeeccccCCcceeeeeeCCC---CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCC
Confidence 66555444445556666432 2222222223333333322 11100
Q ss_pred cc-----------------------------------cccceeeccCCCCceeEEEEeec-CCeEEEEEeCCCeEEEEEC
Q 010784 245 RG-----------------------------------QQALKATLYGHEKPIKLMSVAGH-KSFLLVTISKDSKVRVWDT 288 (501)
Q Consensus 245 ~~-----------------------------------~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~ 288 (501)
+. ...++....-..+.+.-+.+.|. ....|++...||.+.+|-.
T Consensus 224 ~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 224 PASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred CcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 00 00011111112223334445553 2446788889999999976
Q ss_pred CCCccccceec----------ccce--ecCCCceeeecCCC----eEEEEeCCcEEEEEcCCCceE--------------
Q 010784 289 STSSAVRSSCC----------VGMT--SVPGVPVDMKCHES----MLYIASGSSVVTIDLRTMQKV-------------- 338 (501)
Q Consensus 289 ~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~----~~~~~~~~~i~~~d~~~~~~~-------------- 338 (501)
+.......... .+.. ...-.+......|. ..++.+.+...+|.+++++..
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf 383 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF 383 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc
Confidence 65322111100 0000 00111111111111 112223344555555433210
Q ss_pred -----------------eeeccCCCcEEEEEEcC-----------CC-------cEEEEEcCCc-EEEEecCCCCCCCCC
Q 010784 339 -----------------MTPAICKPILHSFSIMP-----------SK-------SLICTGGIGK-AMTWDIRRSQDAVKP 382 (501)
Q Consensus 339 -----------------~~~~~~~~~v~~v~~~~-----------~~-------~~l~~~~~d~-i~iwd~~~~~~~~~~ 382 (501)
....+|....++....| .+ .+++.|...| |.++|+.++...
T Consensus 384 ~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~--- 460 (1062)
T KOG1912|consen 384 DFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA--- 460 (1062)
T ss_pred cccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhh---
Confidence 00112333333333322 22 2678888888 999999997665
Q ss_pred CCcccccCcccCeEEEEecCC-eEEEEec---------CCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccE
Q 010784 383 QPMAELDGHVGSVTQLHMDPY-KIVTGGR---------DDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCR 452 (501)
Q Consensus 383 ~~~~~~~~h~~~v~~l~~~~~-~~l~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 452 (501)
..+..|...|.++.|-.. .++..+. .-+.+.+-|+++|.... |.+. .+....+|..+..|..|+|
T Consensus 461 ---~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~-fR~l-~~~despI~~irvS~~~~y 535 (1062)
T KOG1912|consen 461 ---ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR-FRGL-QKPDESPIRAIRVSSSGRY 535 (1062)
T ss_pred ---hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc-cccC-CCCCcCcceeeeecccCce
Confidence 788899999999999888 5554432 22457788999885432 2111 1345788999999999999
Q ss_pred EEEeecCCCceEEEeeccC
Q 010784 453 IVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 453 l~s~~~d~~g~i~~w~~~~ 471 (501)
|+..- .+..+.+||+..
T Consensus 536 Lai~F--r~~plEiwd~kt 552 (1062)
T KOG1912|consen 536 LAILF--RREPLEIWDLKT 552 (1062)
T ss_pred EEEEe--cccchHHHhhcc
Confidence 99998 669999999754
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.00 E-value=9.1e-07 Score=91.54 Aligned_cols=328 Identities=15% Similarity=0.105 Sum_probs=196.2
Q ss_pred CceEEee--CCcEEEeecCCee--eEEEEeccccc--ccceecc-----cCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 113 HDHILLD--NNDIFSTQGSSIQ--NIKIDNFLSES--YYRATLS-----DHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 113 i~~~~~~--~~~~~~~~g~~d~--~i~vw~~~~~~--~~~~~~~-----~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
+...+++ .+..+++++.... .+.+.....+. +.+..+. ...+.|.++.|.+ +...+
T Consensus 24 ~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~-------------d~~~l 90 (928)
T PF04762_consen 24 ITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLA-------------DSESL 90 (928)
T ss_pred cceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEecc-------------CCCcE
Confidence 4445555 4566777776544 55555544322 1222222 3346788999888 78889
Q ss_pred EEeeCCCceEEe----c-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC-------------CC
Q 010784 182 VTSSCDHSIRLW----W-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS-------------SG 243 (501)
Q Consensus 182 ~s~~~dg~i~vw----d-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~-------------~~ 243 (501)
+.+..+|.|.+. + ....+...-.-...|.+++|| ||++.|+....++++.+.+.+= +.
T Consensus 91 ~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WS----PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~ 166 (928)
T PF04762_consen 91 CIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWS----PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGE 166 (928)
T ss_pred EEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEEC----CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCC
Confidence 999999999999 5 333333333456789999998 8999999999899887764210 00
Q ss_pred ----------c-------cccc------cc------eeeccCCCCceeEEEEeecCCeEEEEEeC---C---CeEEEEEC
Q 010784 244 ----------K-------RGQQ------AL------KATLYGHEKPIKLMSVAGHKSFLLVTISK---D---SKVRVWDT 288 (501)
Q Consensus 244 ----------~-------~~~~------~~------~~~~~~~~~~v~~l~~~~~~~~~l~s~s~---d---g~v~vwd~ 288 (501)
+ .++. .+ ...+. +...-..|+|-. ||.++++.+. . ..++||+-
T Consensus 167 ~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~R 244 (928)
T PF04762_consen 167 SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSR 244 (928)
T ss_pred CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECC
Confidence 0 0000 00 00111 233345677874 8889888774 2 57999997
Q ss_pred CCCccccceecccceecCCCceeeecCCCeEEEEeCC------cEEEEEcCCCceEeeec----cCCCcEEEEEEcCCCc
Q 010784 289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS------SVVTIDLRTMQKVMTPA----ICKPILHSFSIMPSKS 358 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~d~~~~~~~~~~~----~~~~~v~~v~~~~~~~ 358 (501)
+ |......+ ...+..-.++|.|.+.++|+.. .|.+|. ++|-....|. .....|..+.|++|+.
T Consensus 245 e-G~L~stSE-----~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~ 317 (928)
T PF04762_consen 245 E-GELQSTSE-----PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE 317 (928)
T ss_pred C-ceEEeccc-----cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence 6 43322111 4455556777888777777542 344444 3333322222 3456799999999999
Q ss_pred EEEEEcCCcEEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCC--eEEEEecCCCcEEEEeCC----Ccc-------
Q 010784 359 LICTGGIGKAMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPY--KIVTGGRDDLRINIWETD----TGM------- 424 (501)
Q Consensus 359 ~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~----~~~------- 424 (501)
.||.-..+.|.+|-..+..- ...+++.. ....+..+.|+|. ..+...+.+|.+..+++. .+.
T Consensus 318 iLAv~~~~~vqLWt~~NYHW----YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 318 ILAVWLEDRVQLWTRSNYHW----YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred EEEEEecCCceEEEeeCCEE----EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence 99998888899999887541 11133322 1234455889986 333333455666554432 111
Q ss_pred -cccc----------ccc--------CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 425 -LANS----------LLC--------NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 425 -~~~~----------~~~--------~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
.+.. |.. +..-.-...|..++|++++..+++-. .+|.|.+|.+...
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~--~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT--SDGSLSIYEWDLK 458 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE--CCCCEEEEEecCC
Confidence 0000 000 00012356799999999998888887 5698998885543
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=4.8e-07 Score=76.59 Aligned_cols=233 Identities=14% Similarity=0.073 Sum_probs=127.5
Q ss_pred eEEeeCCcEEEeecCCeeeEEEEecccccc-ccee---cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCce
Q 010784 115 HILLDNNDIFSTQGSSIQNIKIDNFLSESY-YRAT---LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSI 190 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~---~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i 190 (501)
.++.+++|+++|.-. |..|.|-..+.+.. ++.. .+...-.=+-++||| |+.+||.+...|+|
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-------------D~tlLa~a~S~G~i 67 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-------------DCTLLAYAESTGTI 67 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-------------CCcEEEEEcCCCeE
Confidence 356788888888654 45555544443211 1111 111112235566766 89999999999999
Q ss_pred EEec-CCceeeeccC-------CCCceEEEEeeecCCCC---CCEEEEeeCCCcEEEEeccCCCccccccceee--c-cC
Q 010784 191 RLWW-KGSCQRCFKG-------HNGPVSTLSDKLLGDGS---GKILASGGEDATVRLWSLSSSGKRGQQALKAT--L-YG 256 (501)
Q Consensus 191 ~vwd-~~~~~~~~~~-------h~~~v~~l~~s~~~~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~-~~ 256 (501)
+++| .|..+..+.. -...|..|.|.... .+ ...|+.-..+|.++-+-+..+... ....... + ..
T Consensus 68 ~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~-~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q-~y~e~hsfsf~~~ 145 (282)
T PF15492_consen 68 RVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYK-KSAQWSYELLVINYRGQLRSYLVSVGTNQ-GYQENHSFSFSSH 145 (282)
T ss_pred EEEecccceeEEcCcccccCCccccceeeeEeeccc-cccccceeEEEEeccceeeeEEEEcccCC-cceeeEEEEeccc
Confidence 9999 6666555432 23567778775221 11 124555677888888876432110 0011222 2 23
Q ss_pred CCCceeEEEEeecCCeEEEEEeC-CC----------eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISK-DS----------KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS 325 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~-dg----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (501)
+...|.++.++| ..++|+.|+. .. -+..|.+-++.+-... +...++ .+.....
T Consensus 146 yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~--------------v~~~~~-~~~~~~~ 209 (282)
T PF15492_consen 146 YPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ--------------VTSSED-DITASSK 209 (282)
T ss_pred CCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE--------------ccccCc-ccccccc
Confidence 467899999998 4455555543 22 1334443333211000 000000 0000111
Q ss_pred cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
+..++.+-+.+...........|..|..||||++|++....| |.+|++.+-+..
T Consensus 210 ~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 210 RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 222333322222222223467899999999999999999888 999999986543
No 286
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2e-07 Score=85.57 Aligned_cols=280 Identities=18% Similarity=0.175 Sum_probs=171.4
Q ss_pred CCceEEeeCCcEEEeecCC----------eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 112 PHDHILLDNNDIFSTQGSS----------IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~----------d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
.+.++.|+|.|.++.+=-. ...+.+|+.+++ .....+......-++..|+. |.. +
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~W~~qfs~-------------dEs-l 139 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNGWVPQFSI-------------DES-L 139 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcCccccccc-------------chh-h
Confidence 6888999999998876432 245678888874 44444443333336788887 433 3
Q ss_pred EEeeCCCceEEecCCc-eeeeccCCCCceEEEEeeecCCCCCCEEEE-----eeCCCcEEEEeccCCCccccccceeecc
Q 010784 182 VTSSCDHSIRLWWKGS-CQRCFKGHNGPVSTLSDKLLGDGSGKILAS-----GGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 182 ~s~~~dg~i~vwd~~~-~~~~~~~h~~~v~~l~~s~~~~~~~~~l~s-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
+.--..+.+.+|+.+. ....-+-|...|+.+.++|.+ ....+++ ++.-+.|+||................++
T Consensus 140 ~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk 217 (566)
T KOG2315|consen 140 AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK 217 (566)
T ss_pred hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence 3333456799998322 122223467889999988532 2234443 4566789999887433211111111111
Q ss_pred CCCCceeEEEEeecCCeEEEEEeC--C---------CeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEE
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISK--D---------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIA 322 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~--d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 322 (501)
.+.| .+.|++....+|+.++. | .++++.++... .+.....-.+.+.++.|+++. ..++
T Consensus 218 --adkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~------s~~V~L~k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 218 --ADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE------SVSVPLLKEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred --ccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc------eEEEecCCCCCceEEEECCCCCEEEEE
Confidence 1222 35666544445444432 2 35777777733 222333557788888888776 4444
Q ss_pred eC---CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC---c-EEEEecCCCCCCCCCCCcccccCcccCe
Q 010784 323 SG---SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIG---K-AMTWDIRRSQDAVKPQPMAELDGHVGSV 395 (501)
Q Consensus 323 ~~---~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v 395 (501)
-| ..+.++|++- ..+..+ .+++=+.+-|+|.|++++.++-| + |-+||..+.+++ ..+.. ..-
T Consensus 289 yGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i------~~~~a--~~t 357 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI------AKFKA--ANT 357 (566)
T ss_pred EecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc------ccccc--CCc
Confidence 44 3899999864 334433 35677889999999999998844 3 999999996554 55553 234
Q ss_pred EEEEecCC-eEEEEecC------CCcEEEEeCCCccccccc
Q 010784 396 TQLHMDPY-KIVTGGRD------DLRINIWETDTGMLANSL 429 (501)
Q Consensus 396 ~~l~~~~~-~~l~~gs~------dg~i~iwd~~~~~~~~~~ 429 (501)
+-+.|+|+ +++++++. |+.++||+.. |..+...
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~ 397 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEK 397 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehh
Confidence 56789999 66655443 7889999974 6655443
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.98 E-value=1.4e-06 Score=90.30 Aligned_cols=319 Identities=13% Similarity=0.119 Sum_probs=187.0
Q ss_pred CCCCceEEeeCCcEEEeecCC------eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 110 AKPHDHILLDNNDIFSTQGSS------IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~g~~------d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
...-..|+|-.||.|+|+.+. ...++||+-+ +.+..+-+.-.+--.+++|-| .|+++|+
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrP-------------sG~lIA~ 273 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRP-------------SGNLIAS 273 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCccCCccCCC-------------CCCEEEE
Confidence 335678889999999998775 3789999976 244333333333345677877 8999998
Q ss_pred eeC---CCceEEec-CCceeeec----cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 184 SSC---DHSIRLWW-KGSCQRCF----KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 184 ~~~---dg~i~vwd-~~~~~~~~----~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
... ...|.+|. +|-....| ......|..+.|+ .++..|+..-.|. |.+|...+-. +.+.+.+.
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn----~ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~ 344 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN----SDSEILAVWLEDR-VQLWTRSNYH----WYLKQEIR 344 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC----CCCCEEEEEecCC-ceEEEeeCCE----EEEEEEEE
Confidence 875 35577776 44333332 2456789999996 8999999977665 9999887643 22333333
Q ss_pred C-CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 256 G-HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 256 ~-~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
- ....+..+.|+|.+...|...+.+|.+..++..-..... ......+.....+..|..+.+-.++.
T Consensus 345 ~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s-------------~~~~~~D~g~vaVIDG~~lllTpf~~ 411 (928)
T PF04762_consen 345 FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS-------------PGSSPNDNGTVAVIDGNKLLLTPFRR 411 (928)
T ss_pred ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec-------------CCCCccCceEEEEEeCCeEEEecccc
Confidence 2 233455599999888888888887888776653211000 00001122234555667888887776
Q ss_pred CceE-----eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC--CCCCCcccc----------cCcccCeE
Q 010784 335 MQKV-----MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA--VKPQPMAEL----------DGHVGSVT 396 (501)
Q Consensus 335 ~~~~-----~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~--~~~~~~~~~----------~~h~~~v~ 396 (501)
.... ..+. ....|.+++|++++..+++-..++ |.+|........ ..+.....+ ......+.
T Consensus 412 a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (928)
T PF04762_consen 412 AVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR 490 (928)
T ss_pred cCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence 5432 2222 367899999999987777777666 888875443211 001111111 11234567
Q ss_pred EEEecCC-eEEEEecC---CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 397 QLHMDPY-KIVTGGRD---DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 397 ~l~~~~~-~~l~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
.++|... .+++.... ...+.++++...+........ ......+..+...++...++.-. .+|.+...+..
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~q~--~~G~v~~~~~~ 564 (928)
T PF04762_consen 491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS--TEVDGVVLIISSSPDSGSLYIQT--NDGKVFQLSSD 564 (928)
T ss_pred EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEE--eccCceEEEEeeCCCCcEEEEEE--CCCEEEEeecC
Confidence 7888766 54444433 367888887443221111100 11133344444444444344444 45776655433
No 288
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.97 E-value=1.1e-06 Score=79.26 Aligned_cols=138 Identities=8% Similarity=0.064 Sum_probs=105.5
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC-ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH-SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
+|.+.|.-..+.. +++-++.|..|| .+-|+| .+..++.+...-+.|.++..+ ++|++++.+
T Consensus 357 ~~~~~VrY~r~~~-------------~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs----~dGK~~vva 419 (668)
T COG4946 357 GKKGGVRYRRIQV-------------DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVS----PDGKKVVVA 419 (668)
T ss_pred CCCCceEEEEEcc-------------CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEc----CCCcEEEEE
Confidence 6778888888876 677899999999 899999 666777888888999999996 899999999
Q ss_pred eCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC----eEEEEECCCCccccceeccccee
Q 010784 229 GEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS----KVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
.....+-+.|++++.. ...-+...+-|+.+.|+| ++..++-+--+| .|+++|+.+++..... .
T Consensus 420 Ndr~el~vididngnv------~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT------T 486 (668)
T COG4946 420 NDRFELWVIDIDNGNV------RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT------T 486 (668)
T ss_pred cCceEEEEEEecCCCe------eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEec------C
Confidence 9999999999999873 333345667899999998 788888776554 5899999988643221 3
Q ss_pred cCCCceeeecCCCe
Q 010784 305 VPGVPVDMKCHESM 318 (501)
Q Consensus 305 ~~~~~~~~~~~~~~ 318 (501)
..+.-++.+++++.
T Consensus 487 ~ta~DfsPaFD~d~ 500 (668)
T COG4946 487 PTAYDFSPAFDPDG 500 (668)
T ss_pred CcccccCcccCCCC
Confidence 33444445555543
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.96 E-value=8.2e-07 Score=80.71 Aligned_cols=275 Identities=11% Similarity=0.110 Sum_probs=169.4
Q ss_pred cccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEE
Q 010784 149 LSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILA 226 (501)
Q Consensus 149 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~ 226 (501)
+..-.-++..+.||| .|.+|++....| |.+|. ....+..+. ...|..+.|+ |.+.+|.
T Consensus 28 ~~~~~~p~~~~~~SP-------------~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fS----P~~kYL~ 87 (561)
T COG5354 28 FESENWPVAYVSESP-------------LGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFS----PNEKYLV 87 (561)
T ss_pred ccccCcchhheeecC-------------cchheehhhccc-eEEccccchhheeeee--cCCceecccC----cccceee
Confidence 333556788888888 789999877654 88998 333333333 3468889997 8899998
Q ss_pred EeeCCC---------------cEEEEeccCCCccccccceeeccCCCCc--ee-EEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784 227 SGGEDA---------------TVRLWSLSSSGKRGQQALKATLYGHEKP--IK-LMSVAGHKSFLLVTISKDSKVRVWDT 288 (501)
Q Consensus 227 sg~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~~l~s~s~dg~v~vwd~ 288 (501)
+=+..+ .+.+||..++. .+..+.....+ .+ -+.|+. +..+++-- ....++++++
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~------iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGM------IVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCce------eEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec
Confidence 865433 48999999986 46666665554 44 567775 44444433 3356999997
Q ss_pred CCCccccceecccceecCCCceeeecCCC-----eEEEEeC-----CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc
Q 010784 289 STSSAVRSSCCVGMTSVPGVPVDMKCHES-----MLYIASG-----SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS 358 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~ 358 (501)
+...... ...... ...+..+.++|. ..+.+.. .++++|.+..+..+.+..-..-.=..+.|.+.|+
T Consensus 160 -t~n~~~~--p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~ 235 (561)
T COG5354 160 -TDNIEEH--PFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK 235 (561)
T ss_pred -CCccccC--chhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc
Confidence 4332110 000001 122223333332 2333321 3788888887666544433333334678888888
Q ss_pred EEEEEc------------CCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eE-EEEecCCCcEEEEeCCCc
Q 010784 359 LICTGG------------IGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KI-VTGGRDDLRINIWETDTG 423 (501)
Q Consensus 359 ~l~~~~------------~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~-l~~gs~dg~i~iwd~~~~ 423 (501)
++++-. +.+++|++++.... .....-.++|...+|.|. ++ +++|-.+-.+.++|++..
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc-------ceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 776431 12388888884332 222245789999999988 33 334468889999999865
Q ss_pred ccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeecc
Q 010784 424 MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFS 470 (501)
Q Consensus 424 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~ 470 (501)
+...+. ...-+.+.|+|.+++++.++.| --|.|-+||..
T Consensus 309 -l~~~~P-------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 309 -LRFYFP-------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred -eEEecC-------CcccccccccCcccEEEEecCCccccceEEeccC
Confidence 444442 3344567788998888887765 34667777743
No 290
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=2.8e-08 Score=82.16 Aligned_cols=199 Identities=16% Similarity=0.153 Sum_probs=113.2
Q ss_pred eEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc------cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCe
Q 010784 209 VSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK------RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSK 282 (501)
Q Consensus 209 v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~ 282 (501)
++.+.++ ....|+++..++.+......++.. .........+..|.++-.+-..+- .++.++++..||.
T Consensus 39 ~~~~~~v-----~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~ 112 (319)
T KOG4714|consen 39 LSKVSLS-----AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGS 112 (319)
T ss_pred EEEeech-----hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc-cCCceEecCCCce
Confidence 5666663 455677777776665554433211 000012223333333222222221 3557999999999
Q ss_pred EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC--------CcEEEEEcCCCceEeeeccCCCcEEEEEEc
Q 010784 283 VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--------SSVVTIDLRTMQKVMTPAICKPILHSFSIM 354 (501)
Q Consensus 283 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~ 354 (501)
+.+++.+.-........... .... +........++.++ +..+.|+++..+....-......|.+++-+
T Consensus 113 ~~v~s~~~~~~~~~~i~~~~--~~~a--s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~h 188 (319)
T KOG4714|consen 113 LAVFSTDKDLALMSRIPSIH--SGSA--SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSH 188 (319)
T ss_pred EEEEechHHHhhhhhccccc--cccc--ccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCC
Confidence 99999876221111111000 0000 11111111222222 245556655444332222223448899999
Q ss_pred CC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC
Q 010784 355 PS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 355 ~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~ 422 (501)
|. .+++++|++|+ +-+||.++.. .+...+..|+.+++.+.|+|. .-|.+++.||.+-.||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 86 56777788888 9999999874 456788899999999999998 4444457999999999763
No 291
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.94 E-value=8.9e-10 Score=66.68 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=38.5
Q ss_pred ccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHH
Q 010784 23 LNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQR 62 (501)
Q Consensus 23 Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~ 62 (501)
||.|++.+||.||++.|+.++++|||.|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999974
No 292
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=8.3e-06 Score=71.46 Aligned_cols=281 Identities=10% Similarity=0.028 Sum_probs=169.3
Q ss_pred CCceEEec----CCce-eeeccCCCCceEEEEeeecCCCCCCEEEEeeCC---CcEEEEeccCCCccccccceeeccCCC
Q 010784 187 DHSIRLWW----KGSC-QRCFKGHNGPVSTLSDKLLGDGSGKILASGGED---ATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 187 dg~i~vwd----~~~~-~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
+.-|.+|+ +++. ...+..+.+..+-|+|+ ++++.|+++-.+ |.|..|.++...- ....+.......
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~----~~~~~LY~v~~~~~~ggvaay~iD~~~G--~Lt~ln~~~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN----PDQRHLYVVNEPGEEGGVAAYRIDPDDG--RLTFLNRQTLPG 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEEC----CCCCEEEEEEecCCcCcEEEEEEcCCCC--eEEEeeccccCC
Confidence 46699997 2221 12233567788899996 888899988654 7788888875311 111222222233
Q ss_pred CceeEEEEeecCCeEEEEEe-CCCeEEEEECCC-Cccccceecccce-------ecCCCceeeecCCCeEEEEeC----C
Q 010784 259 KPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTST-SSAVRSSCCVGMT-------SVPGVPVDMKCHESMLYIASG----S 325 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~ 325 (501)
.+-+.+++++ ++++++++. ..|.|.++-++. +............ .....+-...+.++..++..- +
T Consensus 89 ~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 3447889986 666666665 568999999866 3322221111111 112224445556665443332 3
Q ss_pred cEEEEEcCCCceEeeec---cCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCC-CCCCCCCcccccC---cccCeE
Q 010784 326 SVVTIDLRTMQKVMTPA---ICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQ-DAVKPQPMAELDG---HVGSVT 396 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~-~~~~~~~~~~~~~---h~~~v~ 396 (501)
.|.+|++..++....-. ........|.|+|++++..+..+ ++ |.+|...... .....+.+.++.. -.....
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 89999999776532111 23556789999999999888883 34 9999888741 1101111122211 134667
Q ss_pred EEEecCC-eEEEEec-CCCcEEEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 397 QLHMDPY-KIVTGGR-DDLRINIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 397 ~l~~~~~-~~l~~gs-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.|.++++ ++|.++. ....|-+|.+... ..+..+. .. ..+...-....|+++|++|++++.+ ...|.++..+...
T Consensus 248 aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~-~teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~T 324 (346)
T COG2706 248 AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-IT-PTEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKET 324 (346)
T ss_pred EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-Ee-ccCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCCC
Confidence 8889999 7777642 2346888877653 2232221 11 1223446788999999999999874 5569999988776
Q ss_pred ccee
Q 010784 474 CPVL 477 (501)
Q Consensus 474 ~~~~ 477 (501)
..+.
T Consensus 325 G~L~ 328 (346)
T COG2706 325 GRLT 328 (346)
T ss_pred ceEE
Confidence 6554
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.5e-08 Score=86.25 Aligned_cols=270 Identities=13% Similarity=0.109 Sum_probs=177.9
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CC----ceeeeccCCCCceEEEEeeecCCCCCCEE
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KG----SCQRCFKGHNGPVSTLSDKLLGDGSGKIL 225 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~----~~~~~~~~h~~~v~~l~~s~~~~~~~~~l 225 (501)
-|.+.|+.+.-.. .+++++++.||.++.|. .. ..+..+..|-+.|.+++.+ .++.++
T Consensus 7 mhrd~i~hv~~tk--------------a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S----~dg~L~ 68 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--------------AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS----YDGWLF 68 (558)
T ss_pred cccceeeeEeeeh--------------hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc----ccceeE
Confidence 3778888877654 68999999999999997 33 2345567788888888886 788899
Q ss_pred EEeeC-CCcEEEEeccCCCccccccceeec--cCCCCceeEEEEeecCC--eEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 226 ASGGE-DATVRLWSLSSSGKRGQQALKATL--YGHEKPIKLMSVAGHKS--FLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 226 ~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
.|++. |..++++|+..-.. +..+ .--.+.+.. ..++.+. .+-++.-.++.+.++|-....+
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~Dm------inmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~------- 134 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDM------INMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFC------- 134 (558)
T ss_pred eeccCcccceeEEEeeccch------hhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcC-------
Confidence 99777 99999999987552 2111 112222221 1222111 2333334578888888765421
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC-CCC
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR-SQD 378 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~-~~~ 378 (501)
+....-..|..+|..+.+.+-+..+++....+ |.-|.... .+.
T Consensus 135 -----------------------------------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 135 -----------------------------------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred -----------------------------------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 12223345889999999999999999999888 99998873 111
Q ss_pred C-----CC---CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCC---------------
Q 010784 379 A-----VK---PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYP--------------- 434 (501)
Q Consensus 379 ~-----~~---~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~--------------- 434 (501)
+ .+ ..-+..+........++.|+|+ ..+++-+.|..|+++++.+|++++.+.....
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 1 00 0111222233567789999999 7777777999999999999987766521110
Q ss_pred ------------CCC-CcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceeecCCCCceeeeccc
Q 010784 435 ------------EEA-DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKHEVQNDSKFWGPQ 491 (501)
Q Consensus 435 ------------~~~-~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s~~~d~~~~~w~~~ 491 (501)
..| ...-+.+.|...|++|+.|+. --|++.++.++....+-| .|-.+|+-.++
T Consensus 260 elgRRmaverelek~~~~~~~~~~fdes~~flly~t~---~gikvin~~tn~v~ri~g-k~e~ir~~~~s 325 (558)
T KOG0882|consen 260 ELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI---LGIKVINLDTNTVVRILG-KDEAIRFTRLS 325 (558)
T ss_pred ehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc---eeEEEEEeecCeEEEEec-cchhhhhhhHH
Confidence 011 222355788889999999874 358888888777544444 33355555443
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=1.4e-05 Score=70.07 Aligned_cols=270 Identities=13% Similarity=0.168 Sum_probs=166.4
Q ss_pred eeeEEEEeccccc--ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC---CceEEec----CCcee--
Q 010784 131 IQNIKIDNFLSES--YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD---HSIRLWW----KGSCQ-- 199 (501)
Q Consensus 131 d~~i~vw~~~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~vwd----~~~~~-- 199 (501)
..-|.+|++.+.. .....+-.+.+..+=|+|+| +++.|.++..+ |.|..|. .|...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-------------~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-------------DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-------------CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 5778899887432 22223345677888999998 78888887665 6666664 23322
Q ss_pred eeccCCCCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCccccccceeeccCCCCc----------eeEEEEee
Q 010784 200 RCFKGHNGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQALKATLYGHEKP----------IKLMSVAG 268 (501)
Q Consensus 200 ~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------v~~l~~~~ 268 (501)
........+-..++++ +++++|+++.. -|.|.++-++.... .........|.+. +....+.|
T Consensus 82 n~~~~~g~~p~yvsvd----~~g~~vf~AnY~~g~v~v~p~~~dG~---l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 82 NRQTLPGSPPCYVSVD----EDGRFVFVANYHSGSVSVYPLQADGS---LQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred eccccCCCCCeEEEEC----CCCCEEEEEEccCceEEEEEcccCCc---cccceeeeecCCCCCCccccCCccceeeeCC
Confidence 1122222333667774 89999998875 57899999876432 1111122234443 66778888
Q ss_pred cCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEE--EEe--CCcEEEEEcCCC-ceEeeec
Q 010784 269 HKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLY--IAS--GSSVVTIDLRTM-QKVMTPA 342 (501)
Q Consensus 269 ~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~i~~~d~~~~-~~~~~~~ 342 (501)
+++++++.. .-..|.+|++..++....... .......+..+.|+++..+ +.+ .++|.+|..... .....++
T Consensus 155 -~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~--~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 155 -DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA--EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred -CCCEEEEeecCCceEEEEEcccCcccccccc--ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 676777665 345799999997765432221 1255666777888777654 443 358999988763 2222222
Q ss_pred c---------CCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEe
Q 010784 343 I---------CKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGG 409 (501)
Q Consensus 343 ~---------~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~g 409 (501)
. .......|.+++||++|.++..+- |.+|.+...... ...+.....+......+.+++. + +++++
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~--L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK--LELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE--EEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 1 145577899999999999988443 888887654321 1122223333444678889988 4 44554
Q ss_pred cCCCcEEEEeCC--Cccc
Q 010784 410 RDDLRINIWETD--TGML 425 (501)
Q Consensus 410 s~dg~i~iwd~~--~~~~ 425 (501)
-.+..|.+|... +|++
T Consensus 310 q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 310 QKSDNITVFERDKETGRL 327 (346)
T ss_pred cCCCcEEEEEEcCCCceE
Confidence 455678888765 4443
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=8e-08 Score=90.60 Aligned_cols=232 Identities=9% Similarity=0.101 Sum_probs=157.5
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--C--------C-------ceeeeccCCCCceEEEEeee
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--K--------G-------SCQRCFKGHNGPVSTLSDKL 216 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~--------~-------~~~~~~~~h~~~v~~l~~s~ 216 (501)
....|++|+. +..+++.|+.||.++|-. + + ..-+++.+|.+.|.-+.|.
T Consensus 15 vkL~c~~WNk-------------e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN- 80 (1189)
T KOG2041|consen 15 VKLHCAEWNK-------------ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN- 80 (1189)
T ss_pred ceEEEEEEcc-------------cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-
Confidence 4688999998 789999999999999984 1 1 0124678999999999995
Q ss_pred cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784 217 LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR 295 (501)
Q Consensus 217 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 295 (501)
...+.|-+...+|.|.+|-+-.+.- +...+ ....+-|.+++|.. ++..+.....||.|.+=.++...
T Consensus 81 ---e~~QKLTtSDt~GlIiVWmlykgsW-----~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR--- 148 (1189)
T KOG2041|consen 81 ---ENNQKLTTSDTSGLIIVWMLYKGSW-----CEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR--- 148 (1189)
T ss_pred ---cccccccccCCCceEEEEeeecccH-----HHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce---
Confidence 7788999999999999999988753 22222 23456688999985 78888889999998876665432
Q ss_pred ceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC
Q 010784 296 SSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR 374 (501)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~ 374 (501)
+|.- .++ ......+.|++|.+.++.+-.++ +.+||..
T Consensus 149 ---------------------------------IwgK-------eLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 149 ---------------------------------IWGK-------ELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred ---------------------------------ecch-------hcc--hheccceeecccHHHHHhhhcCCcEEEeccc
Confidence 1110 011 12234688999988888777777 9999976
Q ss_pred CCCCC-CCCCCcc----cccCcccCeEEEEe--------cCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784 375 RSQDA-VKPQPMA----ELDGHVGSVTQLHM--------DPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS 440 (501)
Q Consensus 375 ~~~~~-~~~~~~~----~~~~h~~~v~~l~~--------~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (501)
..-.. .+..+.. .+......|-.+.| -|+ ..++.+-.+|.+.|..-.+......+. ....
T Consensus 187 gnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d------tgm~ 260 (1189)
T KOG2041|consen 187 GNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD------TGMK 260 (1189)
T ss_pred ccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe------cccE
Confidence 43110 0000000 01111112444444 346 677777789999887766544443442 1356
Q ss_pred eeeeEeeccccEEEEeecC
Q 010784 441 TGCSAMAVSGCRIVTASYG 459 (501)
Q Consensus 441 v~~~~~s~~g~~l~s~~~d 459 (501)
+....|+++|..|+.+|.+
T Consensus 261 ~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eecceecCCCcEEEEccCc
Confidence 8889999999999999876
No 296
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.9e-07 Score=88.28 Aligned_cols=295 Identities=12% Similarity=0.075 Sum_probs=168.2
Q ss_pred cCcEEEEeeCCCceEEec-CCceeeecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 177 TENVLVTSSCDHSIRLWW-KGSCQRCFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
.+.+++.|+.-|.+++|+ .+.....++ +..+.+.....+ ++..++|.|+..|.|.++.++.............
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs----~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS----SVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec----chhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 679999999999999999 444444443 234444445554 6778899999999999999887443222211222
Q ss_pred ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcC
Q 010784 254 LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLR 333 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (501)
-+.|...|++++|++ ++..+++|...|.|.+-.+.+. .............++.++.++.....+++++--.-.+++++
T Consensus 120 d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~Lc~tE 197 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCILCQTE 197 (726)
T ss_pred cccCCceEEEEEecc-cccEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhhhhhheeecc
Confidence 234788999999997 8889999999999999888773 11111222223677788888888888888777666666665
Q ss_pred CCce--EeeeccCCCcEEEEEEcCC----CcEEEEEcCCcEEEEecCCCCCC-----------CCCCCcccccC------
Q 010784 334 TMQK--VMTPAICKPILHSFSIMPS----KSLICTGGIGKAMTWDIRRSQDA-----------VKPQPMAELDG------ 390 (501)
Q Consensus 334 ~~~~--~~~~~~~~~~v~~v~~~~~----~~~l~~~~~d~i~iwd~~~~~~~-----------~~~~~~~~~~~------ 390 (501)
.... +-+-....-.-...+|-|. ..-.+.++.=+.|+|...-...+ ..+.+...+..
T Consensus 198 ~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~ 277 (726)
T KOG3621|consen 198 AETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQ 277 (726)
T ss_pred hhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccc
Confidence 4432 1111110101233444443 33333444444677755321111 00111111111
Q ss_pred --------cccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCc
Q 010784 391 --------HVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPG 462 (501)
Q Consensus 391 --------h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g 462 (501)
|-+-......+.+.+++-+ .-| |+|+|..+.+.+.-... ...|.. .+..|+-|++-. .|+
T Consensus 278 ~~~~~~~q~ls~~k~~~l~~~~vLa~t-e~G-iyv~d~~~~~v~l~se~------~~DI~d--Vs~~~neiFvL~--~d~ 345 (726)
T KOG3621|consen 278 RSLPSGTQHLSLSKSSTLHSDRVLAWT-EVG-IYVFDSNNSQVYLWSEG------GHDILD--VSHCGNEIFVLN--LDR 345 (726)
T ss_pred cCCCCCccccccceeEEeecceEEEee-cce-EEEEEeccceEEEeecC------CCceeE--EeecCceEEEEe--cCC
Confidence 1112222233333555553 444 88888877665544321 223333 344555555555 457
Q ss_pred eEEEeeccCCccceeecCCCCceeeec
Q 010784 463 LLQFRDFSNATCPVLKHEVQNDSKFWG 489 (501)
Q Consensus 463 ~i~~w~~~~~~~~~~s~~~d~~~~~w~ 489 (501)
.+++..+....+.+.+-..+|....|+
T Consensus 346 ~l~~~sv~s~qr~l~~l~~~G~~m~~~ 372 (726)
T KOG3621|consen 346 GLKVESVASRQRKLESLCRCGKEMFVL 372 (726)
T ss_pred ceeEEEeehhHHHHHHHHhhchhhhhh
Confidence 777777777666655555555444443
No 297
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=9.9e-06 Score=74.68 Aligned_cols=269 Identities=14% Similarity=0.129 Sum_probs=172.4
Q ss_pred eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---
Q 010784 156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE--- 230 (501)
Q Consensus 156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~--- 230 (501)
-+-+.||| -|.+|+|--.-| |.+|- .-..++.|. |. .|.-+.|| |..+||+|=+.
T Consensus 213 etyv~wSP-------------~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfS----P~EkYLVT~s~~p~ 272 (698)
T KOG2314|consen 213 ETYVRWSP-------------KGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFS----PNEKYLVTYSPEPI 272 (698)
T ss_pred eeeEEecC-------------CceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecC----CccceEEEecCCcc
Confidence 45678998 789999988766 88996 333444443 44 57788997 88899998652
Q ss_pred --------CCcEEEEeccCCCccccccceeeccC---CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceec
Q 010784 231 --------DATVRLWSLSSSGKRGQQALKATLYG---HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCC 299 (501)
Q Consensus 231 --------dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 299 (501)
...++|||+.+|.. ...+.. ....-.-+.|+. ++++++--.. ..|.||+..+..++...
T Consensus 273 ~~~~~d~e~~~l~IWDI~tG~l------krsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~K-- 342 (698)
T KOG2314|consen 273 IVEEDDNEGQQLIIWDIATGLL------KRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKK-- 342 (698)
T ss_pred ccCcccCCCceEEEEEccccch------hcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeeccc--
Confidence 25789999999874 333332 222223457885 7777776655 56899987664332110
Q ss_pred ccceecCCCceeeecCCCeEEEEeC--------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC------
Q 010784 300 VGMTSVPGVPVDMKCHESMLYIASG--------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI------ 365 (501)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~------ 365 (501)
. -....+..+.++|...++|-= ..+.+..+.+++.+++...+.-.=..+.|-.+|.+|+.--+
T Consensus 343 --s-lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 343 --S-LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred --c-cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 0 112234456666766666521 26778888888877766655443345667777888875321
Q ss_pred -----CcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEec--CCCcEEEEeCCC----cccccccccC
Q 010784 366 -----GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGR--DDLRINIWETDT----GMLANSLLCN 432 (501)
Q Consensus 366 -----d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs--~dg~i~iwd~~~----~~~~~~~~~~ 432 (501)
.++.|+.++..... +..+. -...|...+|.|. ++.+..+ ...++.+|.+++ .+++..+.
T Consensus 420 ~~g~f~n~eIfrireKdIp-----ve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-- 491 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIP-----VEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-- 491 (698)
T ss_pred ccceEeeEEEEEeeccCCC-----ceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--
Confidence 12667777765432 33333 3678999999998 4444332 345789998873 23344442
Q ss_pred CCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeecc
Q 010784 433 YPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFS 470 (501)
Q Consensus 433 ~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~ 470 (501)
....+.+.|+|.|++++.+..- ..|.+.++|.+
T Consensus 492 -----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 492 -----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred -----ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 2456789999999999886531 36889999866
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.8e-08 Score=86.73 Aligned_cols=170 Identities=16% Similarity=0.227 Sum_probs=120.0
Q ss_pred EEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784 226 ASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV 305 (501)
Q Consensus 226 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 305 (501)
++.+.+-.|-+-|+.++- .+.+. ..+.|.++.|.. .++++..|..+|.|..+|++.+..-
T Consensus 228 fs~G~sqqv~L~nvetg~-------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG----------- 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQG----------- 287 (425)
T ss_pred ecccccceeEEEEeeccc-------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccC-----------
Confidence 555667788999999875 34444 667788889985 6789999999999999999976210
Q ss_pred CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCc-EEEEecCCCCCCCCCC
Q 010784 306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGK-AMTWDIRRSQDAVKPQ 383 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 383 (501)
++.+...+ -|...|+++..-. ++++|.+.+.++ |++||++..++. .
T Consensus 288 ----------------------------~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~---~ 335 (425)
T KOG2695|consen 288 ----------------------------NGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK---K 335 (425)
T ss_pred ----------------------------CCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc---c
Confidence 01111111 2788888887766 566776666556 999999987662 3
Q ss_pred CcccccCcccCeEEE--EecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 384 PMAELDGHVGSVTQL--HMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 384 ~~~~~~~h~~~v~~l--~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
.+.+..||.+.-.-+ .+++. .++++++.|...+||.+++|+++.+++...+ .....+.+++|..
T Consensus 336 ~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s-~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 336 SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS-ASEVDIPSVAFDS 402 (425)
T ss_pred ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc-cccccccceehhc
Confidence 457888886544333 34555 7777788999999999999999999965442 2233455666643
No 299
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=2.4e-05 Score=65.40 Aligned_cols=146 Identities=13% Similarity=0.073 Sum_probs=91.4
Q ss_pred eCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CC
Q 010784 119 DNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KG 196 (501)
Q Consensus 119 ~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~ 196 (501)
.....+++.|+..+.+.--|..+|+-.-..+- ...|.+-+.- -|++++.|...|.+++-+ +|
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v--------------vgdfVV~GCy~g~lYfl~~~tG 83 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV--------------VGDFVVLGCYSGGLYFLCVKTG 83 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE--------------ECCEEEEEEccCcEEEEEecch
Confidence 34467888899999999999888733333322 2344443333 268899999999999987 77
Q ss_pred ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEE
Q 010784 197 SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVT 276 (501)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s 276 (501)
.....+..- +.|.+-+-. ++++..+..|+.|++.+..|..+.. ++...+...+...+-++.+.++ .|..
T Consensus 84 s~~w~f~~~-~~vk~~a~~---d~~~glIycgshd~~~yalD~~~~~------cVykskcgG~~f~sP~i~~g~~-sly~ 152 (354)
T KOG4649|consen 84 SQIWNFVIL-ETVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTYG------CVYKSKCGGGTFVSPVIAPGDG-SLYA 152 (354)
T ss_pred hheeeeeeh-hhhccceEE---cCCCceEEEecCCCcEEEecccccc------eEEecccCCceeccceecCCCc-eEEE
Confidence 666665432 223222211 5789999999999999999999876 3555443333222334444233 4555
Q ss_pred EeCCCeEEEEECCCC
Q 010784 277 ISKDSKVRVWDTSTS 291 (501)
Q Consensus 277 ~s~dg~v~vwd~~~~ 291 (501)
+...|.|.--.....
T Consensus 153 a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 153 AITAGAVLAVTKNPY 167 (354)
T ss_pred EeccceEEEEccCCC
Confidence 555666655554443
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.2e-08 Score=86.18 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=107.3
Q ss_pred EEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCc
Q 010784 182 VTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKP 260 (501)
Q Consensus 182 ~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 260 (501)
++.+.+-.|-+-| .....+.|. ..+.|.++.|. ..+++++.|..+|.|...|++...+... -+.+.+ -|...
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~----~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~rl-yh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFA----GSDNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQRL-YHDSS 300 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhc----ccCCeeEecccCCcEEEEEeeecccCCC-cceEEE-EcCcc
Confidence 4445566677777 444455555 67789999996 6789999999999999999998632111 133334 38899
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT 340 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 340 (501)
|+++.....++..|++.+.+|+|++||++--+. ++.+..
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----------------------------------------~~~V~q 339 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----------------------------------------KKSVMQ 339 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhc-----------------------------------------ccceee
Confidence 999988765778899999999999999986543 122345
Q ss_pred eccCCCcEE--EEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 341 PAICKPILH--SFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 341 ~~~~~~~v~--~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
+.+|...-. -+...+....++++++|. .|||.++.+..+
T Consensus 340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred eecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 556633222 233456677888899999 999999987765
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3.1e-07 Score=88.06 Aligned_cols=190 Identities=15% Similarity=0.122 Sum_probs=131.5
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED 231 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d 231 (501)
.+.++|++++ +.+|+-|..+|.|++.+ .+.. .+...|... +.+|.+++||+.|
T Consensus 39 ~D~is~~av~---------------~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~----------~~~Gey~asCS~D 92 (846)
T KOG2066|consen 39 NDAISCCAVH---------------DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS----------ILEGEYVASCSDD 92 (846)
T ss_pred hhHHHHHHhh---------------cceeeeccccceEEEEecCCcc-ccccccccc----------ccCCceEEEecCC
Confidence 3567788775 48999999999999998 5554 444445443 3689999999999
Q ss_pred CcEEEEeccCCCccccccceeeccCCCCceeEEEEeec----CCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784 232 ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH----KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG 307 (501)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 307 (501)
|+|.|-.+.+.+. ...+ ....++.+++++|+ ..+++++|+.-| +.++.-+=....
T Consensus 93 Gkv~I~sl~~~~~------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk------------- 151 (846)
T KOG2066|consen 93 GKVVIGSLFTDDE------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK------------- 151 (846)
T ss_pred CcEEEeeccCCcc------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-------------
Confidence 9999999988764 2222 34568899999985 356899999888 776643211100
Q ss_pred CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCccc
Q 010784 308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~ 387 (501)
.. ..+....++|.++.| .|+++|-+++.||++||+.+.+.+...++-..
T Consensus 152 ----------------------------~~-v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 152 ----------------------------DS-VVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQ 200 (846)
T ss_pred ----------------------------cc-eeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCC
Confidence 00 022334789999999 68899999999999999998776522111111
Q ss_pred ccCcccCeEEEEecCCeEEEEecCCCcEEEEeCC
Q 010784 388 LDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETD 421 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~ 421 (501)
......-...+.|.++..++.| ...+|+|..++
T Consensus 201 ~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 201 SVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence 1111223456889888455555 66689999887
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=9.7e-09 Score=98.89 Aligned_cols=202 Identities=15% Similarity=0.159 Sum_probs=140.0
Q ss_pred cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCC
Q 010784 143 SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDG 220 (501)
Q Consensus 143 ~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~ 220 (501)
.+..+++..|...-+|++|+- +.++|+.|+..|.|++++ +|.......+|.++|+.+.=+ .
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-------------~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs----~ 1153 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-------------GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS----V 1153 (1516)
T ss_pred cccchhhhccccceeeEEeec-------------CCceEEeeeccceEEEEEccCcccccccccccccccccccc----C
Confidence 456677889999999999998 789999999999999998 888888899999999999854 6
Q ss_pred CCCEEEEeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 221 SGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 221 ~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
+|..+++.+.-. ...+|++..-.. ..+.+.+ -.++.|+.. ...-+.|.......+||+.++.......
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~~-----~~Hsf~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGG-----PRHSFDE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred CcceeeeeccccCchHHHhccccccC-----ccccccc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhc
Confidence 777766655433 468999876432 3444432 346778753 3333445555678999999987654321
Q ss_pred cccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCC
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQD 378 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~ 378 (501)
. ........-....|+|...++..++ .+||.+..+.++.|......+ .-.|+|.|.-++.-++ |||+++.+.
T Consensus 1224 t-~~~~~~y~~n~a~FsP~D~LIlndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1224 T-DTVTSSYSNNLAHFSPCDTLILNDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE----IWDMRTFKL 1295 (1516)
T ss_pred C-cchhhhhhccccccCCCcceEeeCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech----hhhhHHHHH
Confidence 1 1111111223445555554444443 579999998888877655333 3358999998888775 899999654
Q ss_pred C
Q 010784 379 A 379 (501)
Q Consensus 379 ~ 379 (501)
+
T Consensus 1296 L 1296 (1516)
T KOG1832|consen 1296 L 1296 (1516)
T ss_pred H
Confidence 3
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.7e-07 Score=83.74 Aligned_cols=269 Identities=15% Similarity=0.054 Sum_probs=174.7
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEeccc--ccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLS--ESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~--~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
|..-|+.+... .-.++.+++.||.++.|.... +.+.+..+..|-..|.+++.+- ++.++.|.+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-------------dg~L~~Sv~d 73 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-------------DGWLFRSVED 73 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-------------cceeEeeccC
Confidence 33445555444 357889999999999998653 4567777888999999999887 8899999777
Q ss_pred -CCceEEec--CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 187 -DHSIRLWW--KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 187 -dg~i~vwd--~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
|..++++| .-..+ ..+..-.+.+.++. + ..++-..+-++...+|.+.++|-..... +....-.-|..+|
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-s-kGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV 147 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-S-KGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPV 147 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceEEec-C-CCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCce
Confidence 99999998 22221 12222223333222 1 0001113334445688999999876543 2344556699999
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCC-CccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEee
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTST-SSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMT 340 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 340 (501)
..+.+.+ .+..+++....|.|.-|.... .+..+. -..|.+....-+..
T Consensus 148 ~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~------------------------------~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 148 KKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRT------------------------------NLNFELKHETDLYG 196 (558)
T ss_pred EEEEeec-cccceeeccccceeEeecCCCcccCccc------------------------------cccccccccchhhc
Confidence 9999997 677888999999999998873 111100 00122222233333
Q ss_pred eccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCc--------------------------ccccCccc
Q 010784 341 PAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPM--------------------------AELDGHVG 393 (501)
Q Consensus 341 ~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~--------------------------~~~~~h~~ 393 (501)
+........++.|+|++..+.+-+.|. |++++.++++........ ..+..|..
T Consensus 197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~ 276 (558)
T KOG0882|consen 197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS 276 (558)
T ss_pred ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcC
Confidence 444567788999999999999999999 999999998754111000 01111222
Q ss_pred -CeEEEEecCC-eEEEEecCCCcEEEEeCCCccccccc
Q 010784 394 -SVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 394 -~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
.-+.+.|+.. .++.-|+.=| |++.++.++++.+.+
T Consensus 277 ~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 277 TVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred cccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 2345667777 7777765554 899999988876665
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.77 E-value=9.5e-06 Score=71.81 Aligned_cols=217 Identities=12% Similarity=0.051 Sum_probs=127.8
Q ss_pred cCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 177 TENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
++.++++--..+.|..|+ .+.....+.... ...+++. .++ ..++.+..+ .+.++|..+++. ..+....
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~---~~~-g~l~v~~~~-~~~~~d~~~g~~----~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFD---RPD-GRLYVADSG-GIAVVDPDTGKV----TVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEE---CTT-SEEEEEETT-CEEEEETTTTEE----EEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEE---ccC-CEEEEEEcC-ceEEEecCCCcE----EEEeecc
Confidence 577778877889999998 444444333222 5566663 134 455555554 455668887642 1222221
Q ss_pred --C-CCCceeEEEEeecCCeEEEEEeCC--------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 256 --G-HEKPIKLMSVAGHKSFLLVTISKD--------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 256 --~-~~~~v~~l~~~~~~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
. .....+.+++.+ ++++.++.... |.|..++.. ++
T Consensus 80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-------------------------------- 125 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-------------------------------- 125 (246)
T ss_dssp TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SE--------------------------------
T ss_pred CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-Ce--------------------------------
Confidence 1 344567888887 66666665433 334444443 21
Q ss_pred CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-cCCc-EEEEecCCCCC-CCCCCCcccccCcccCeEEEEec
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG-GIGK-AMTWDIRRSQD-AVKPQPMAELDGHVGSVTQLHMD 401 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~-i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~ 401 (501)
. ..+...-...+.++|+|+++.|+.. +..+ |..+++..... +...+.+..+....+..-.++++
T Consensus 126 ------------~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 126 ------------V-TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ------------E-EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred ------------E-EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 1 1111123446899999999876644 4555 99999875432 10011122333323347789999
Q ss_pred CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEee-ccccEEEEee
Q 010784 402 PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMA-VSGCRIVTAS 457 (501)
Q Consensus 402 ~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~ 457 (501)
.+ ++.++....+.|.+++.+ |+.+..+.. ....+++++|. ++.+.|+..+
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-----p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIEL-----PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE------SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcC-----CCCCEEEEEEECCCCCEEEEEe
Confidence 98 888887788999999987 888888843 23478999994 6766665543
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=1.1e-05 Score=76.78 Aligned_cols=257 Identities=11% Similarity=0.023 Sum_probs=143.1
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEE-EEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVST-LSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~-l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
.+..++.++.+|.+..+| +|+.+-...... .+.+ ... .+..++.+..+|.+..+|..+++. +-.
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v------~~~~v~v~~~~g~l~ald~~tG~~------~W~ 185 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV------SDGLVLVHTSNGMLQALNESDGAV------KWT 185 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE------ECCEEEEECCCCEEEEEEccCCCE------eee
Confidence 356677788899999998 677766554332 2222 122 234667778889999999999874 222
Q ss_pred ccCCCCc-----eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee------cCCCceeeecCCCeEEEE
Q 010784 254 LYGHEKP-----IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS------VPGVPVDMKCHESMLYIA 322 (501)
Q Consensus 254 ~~~~~~~-----v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 322 (501)
....... ...-... ++ .++.++.+|.+..+|..+++............ ...........++.+++.
T Consensus 186 ~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~ 262 (394)
T PRK11138 186 VNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL 262 (394)
T ss_pred ecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE
Confidence 2211100 0011111 23 46667788999999999887654322111000 000001111224445554
Q ss_pred e-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEE
Q 010784 323 S-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLH 399 (501)
Q Consensus 323 ~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~ 399 (501)
+ ++.+..+|..+++.+...... ....+.. .+..++.++.++ +..+|..+++.+ -....- .....+..
T Consensus 263 ~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~------W~~~~~~~~~~~sp~ 332 (394)
T PRK11138 263 AYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVEL------WSQSDLLHRLLTAPV 332 (394)
T ss_pred EcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEE------EcccccCCCcccCCE
Confidence 4 468999999999887655421 1112222 344555566556 999999887644 111100 11122222
Q ss_pred ecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceee-eEeeccccEEEEeecCCCceEEEeec
Q 010784 400 MDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGC-SAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 400 ~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
+..+.+++ ++.||.|.+.|..+|+.+...... ...+.. ..+ .+..|+.++ .+|.|..++.
T Consensus 333 v~~g~l~v-~~~~G~l~~ld~~tG~~~~~~~~~-----~~~~~s~P~~--~~~~l~v~t--~~G~l~~~~~ 393 (394)
T PRK11138 333 LYNGYLVV-GDSEGYLHWINREDGRFVAQQKVD-----SSGFLSEPVV--ADDKLLIQA--RDGTVYAITR 393 (394)
T ss_pred EECCEEEE-EeCCCEEEEEECCCCCEEEEEEcC-----CCcceeCCEE--ECCEEEEEe--CCceEEEEeC
Confidence 33335544 468999999999999988776421 111221 122 344677777 6698887653
No 306
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.76 E-value=9.1e-05 Score=67.28 Aligned_cols=193 Identities=11% Similarity=0.050 Sum_probs=126.8
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccce---ecCC--Cc----eee-ecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT---SVPG--VP----VDM-KCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~~~~--~~----~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
+++.++. +..|.|.+||..+.+......-.... .... .+ ... ..+++...+++.++..+.+...+-.++
T Consensus 277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iq 355 (668)
T COG4946 277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEE
Confidence 5555554 34578999999876543211110000 0000 00 001 123455666677777777766655444
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
. ++.+.|.-..+.-+++-++.|..|+ +-|+|..+++. ..+...-+.|.++..+++ +.++.+.....+-
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-------EEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 3 3566688778877877888888666 99999998763 455566788999999999 8777776778888
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC--CCceEEEeeccCCcccee
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG--EPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d--~~g~i~~w~~~~~~~~~~ 477 (501)
+.|+.+|.....= ....+-|+...|+|++++||-+-.+ -...|+++|+..+.-.-+
T Consensus 427 vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 427 VIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 8899998754333 2235679999999999999988632 123688888776554433
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.5e-08 Score=97.68 Aligned_cols=196 Identities=16% Similarity=0.222 Sum_probs=135.2
Q ss_pred CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
.+..++|+.|+...+|++|+ .+.+.|+.|+..|.|+++++.+|.. ......|..+|+.+.-+- ++..++
T Consensus 1091 Fr~w~~frd~~~~fTc~afs----~~~~hL~vG~~~Geik~~nv~sG~~------e~s~ncH~SavT~vePs~-dgs~~L 1159 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFS----GGTNHLAVGSHAGEIKIFNVSSGSM------EESVNCHQSAVTLVEPSV-DGSTQL 1159 (1516)
T ss_pred cccchhhhccccceeeEEee----cCCceEEeeeccceEEEEEccCccc------cccccccccccccccccC-Ccceee
Confidence 34556788899999999998 7889999999999999999999874 778889999999988775 455544
Q ss_pred EE-eCCC-eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEE
Q 010784 276 TI-SKDS-KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSI 353 (501)
Q Consensus 276 s~-s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~ 353 (501)
+. +... -..+|++..- +...+++. .-.++.|
T Consensus 1160 tsss~S~PlsaLW~~~s~-------------------------------------------~~~~Hsf~----ed~~vkF 1192 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASST-------------------------------------------GGPRHSFD----EDKAVKF 1192 (1516)
T ss_pred eeccccCchHHHhccccc-------------------------------------------cCcccccc----ccceeeh
Confidence 44 4333 3567887542 11112222 2246677
Q ss_pred cCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccc-cc---CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCccccc
Q 010784 354 MPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAE-LD---GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLAN 427 (501)
Q Consensus 354 ~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~---~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~ 427 (501)
+..-+.-+.|+... ..+||+.+...+ .+ +. +....-+...|+|+ .++. .|| .+||++..+.++
T Consensus 1193 sn~~q~r~~gt~~d~a~~YDvqT~~~l------~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1193 SNSLQFRALGTEADDALLYDVQTCSPL------QTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIH 1261 (1516)
T ss_pred hhhHHHHHhcccccceEEEecccCcHH------HHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHh
Confidence 76655555555445 999999997654 33 21 12223367889999 6665 466 589999998888
Q ss_pred ccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.|. ..+. -..-.|+|.|.-++.-+ .+||+.+-.
T Consensus 1262 ~FD-----~ft~-~~~G~FHP~g~eVIINS-------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1262 RFD-----QFTD-YGGGGFHPSGNEVIINS-------EIWDMRTFK 1294 (1516)
T ss_pred hhh-----hhee-cccccccCCCceEEeec-------hhhhhHHHH
Confidence 883 2221 22336999999988876 278866543
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=1.4e-05 Score=67.87 Aligned_cols=205 Identities=17% Similarity=0.152 Sum_probs=119.6
Q ss_pred cCcEEEEeeCCCceEEec----CCceeee---ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccccc
Q 010784 177 TENVLVTSSCDHSIRLWW----KGSCQRC---FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQA 249 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd----~~~~~~~---~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 249 (501)
+|+.||.-- |..|.|=. -...+.. -+.....=+-++|| +++.+||.+...|+|+++|+....
T Consensus 8 ~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WS----pD~tlLa~a~S~G~i~vfdl~g~~------ 76 (282)
T PF15492_consen 8 DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWS----PDCTLLAYAESTGTIRVFDLMGSE------ 76 (282)
T ss_pred CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEEC----CCCcEEEEEcCCCeEEEEecccce------
Confidence 677776654 66676653 2222222 23333445679997 899999999999999999998643
Q ss_pred ceeeccC-------CCCceeEEEEeecC-----CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC
Q 010784 250 LKATLYG-------HEKPIKLMSVAGHK-----SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES 317 (501)
Q Consensus 250 ~~~~~~~-------~~~~v~~l~~~~~~-----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (501)
+..+.. -...|..+.|.... ...|+.-..+|.++-|-+..+...
T Consensus 77 -lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q----------------------- 132 (282)
T PF15492_consen 77 -LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ----------------------- 132 (282)
T ss_pred -eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC-----------------------
Confidence 222221 12345555554321 224555555666655544222100
Q ss_pred eEEEEeCCcEEEEEcCCCceEe--eecc-CCCcEEEEEEcCCCcEEEEEc----CC--------cEEEEecCCCCCCCC-
Q 010784 318 MLYIASGSSVVTIDLRTMQKVM--TPAI-CKPILHSFSIMPSKSLICTGG----IG--------KAMTWDIRRSQDAVK- 381 (501)
Q Consensus 318 ~~~~~~~~~i~~~d~~~~~~~~--~~~~-~~~~v~~v~~~~~~~~l~~~~----~d--------~i~iwd~~~~~~~~~- 381 (501)
..+..+ .+.. +...|.++.++|..++|++|+ ++ ++..|.+-++..-.+
T Consensus 133 ----------------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 133 ----------------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred ----------------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 011111 1222 356677777777766666665 11 356666544322100
Q ss_pred -------------C---CCccc------ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccC
Q 010784 382 -------------P---QPMAE------LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCN 432 (501)
Q Consensus 382 -------------~---~~~~~------~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~ 432 (501)
. ..+.. .......|..|..+|+ .+||+...+|.|.+|++.+-++.+.+...
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 0 00000 0123567999999999 99999999999999999998888877543
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.72 E-value=4.5e-06 Score=73.61 Aligned_cols=216 Identities=12% Similarity=0.108 Sum_probs=123.7
Q ss_pred CCceEEec--CCceeeeccCC--CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 187 DHSIRLWW--KGSCQRCFKGH--NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 187 dg~i~vwd--~~~~~~~~~~h--~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
+|+|..|| +++.+-...-- .....+..+ .++..+++++.++.|..||..+++. +..... ...+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~l~~~d~~tG~~------~W~~~~-~~~~~ 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-----PDGGRVYVASGDGNLYALDAKTGKV------LWRFDL-PGPIS 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-----EETTEEEEEETTSEEEEEETTTSEE------EEEEEC-SSCGG
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-----EeCCEEEEEcCCCEEEEEECCCCCE------EEEeec-ccccc
Confidence 57788887 66666554321 122221122 3566788888999999999998874 333332 22211
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccce-ecccceecCCCceeeecCCCeEEEEe-CCcEEEEEcCCCceEee
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSS-CCVGMTSVPGVPVDMKCHESMLYIAS-GSSVVTIDLRTMQKVMT 340 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~ 340 (501)
..... .+..++.++.++.+..+|..+++..... ...................+.++++. .+.+..+|+++++.+..
T Consensus 70 ~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 70 GAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp SGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ceeee--cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 11122 2335666678889999999999876542 21110000112223334466677776 67999999999999877
Q ss_pred eccCCCc----------EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEE-EEecCCeEEEE
Q 010784 341 PAICKPI----------LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQ-LHMDPYKIVTG 408 (501)
Q Consensus 341 ~~~~~~~----------v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~l~~ 408 (501)
....... +..-....++..+++..++. +.+ |+.+++.. .... ...+.. ...+.+.+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~------w~~~--~~~~~~~~~~~~~~l~~~ 218 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL------WSKP--ISGIYSLPSVDGGTLYVT 218 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE------EEEC--SS-ECECEECCCTEEEEE
T ss_pred eecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE------EEec--CCCccCCceeeCCEEEEE
Confidence 7654322 12222233454444444555 555 99998632 2111 222333 22222355555
Q ss_pred ecCCCcEEEEeCCCcccc
Q 010784 409 GRDDLRINIWETDTGMLA 426 (501)
Q Consensus 409 gs~dg~i~iwd~~~~~~~ 426 (501)
. .++.|..||+.+|+.+
T Consensus 219 ~-~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 219 S-SDGRLYALDLKTGKVV 235 (238)
T ss_dssp E-TTTEEEEEETTTTEEE
T ss_pred e-CCCEEEEEECCCCCEE
Confidence 4 8999999999999865
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=2.9e-08 Score=59.14 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=35.7
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd 194 (501)
+++.++.+|.+.|++|+|+| ++++|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~-------------~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP-------------DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET-------------TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec-------------ccccceeeCCCCEEEEEC
Confidence 56788999999999999999 899999999999999997
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.1e-05 Score=74.79 Aligned_cols=214 Identities=14% Similarity=0.108 Sum_probs=119.7
Q ss_pred ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCE-EEEeeC---CCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKI-LASGGE---DATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~-l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
.|.+=| .+...+.+.... ......|+ |+|+. ++..+. +..|.++|+.+++. ..+....+....
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wS----pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------~~lt~~~g~~~~ 237 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWA----NKEQTAFYYTSYGERKPTLYKYNLYTGKK-------EKIASSQGMLVV 237 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEEC----CCCCcEEEEEEccCCCCEEEEEECCCCcE-------EEEecCCCcEEe
Confidence 444445 444444444333 67778887 78874 554333 35688889987753 223234455556
Q ss_pred EEEeecCCeEEEEEeCC--CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 264 MSVAGHKSFLLVTISKD--SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
..|+|++..++++.+.+ ..|.++|+.+++. ..+
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~---------------------------------------------~~L 272 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL---------------------------------------------TQI 272 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcE---------------------------------------------EEc
Confidence 78998444555555444 3455666655432 111
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcC--Cc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-e-EEEEecCC---
Q 010784 342 AICKPILHSFSIMPSKSLICTGGI--GK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-K-IVTGGRDD--- 412 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~--d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~~gs~d--- 412 (501)
..+........|+|||+.|+-.++ +. |.+.|+.+++.. . .+..+. . ...|+|+ + ++.+....
T Consensus 273 T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~----r-lt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 273 TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE----Q-VVFHGK--N--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE----e-CccCCC--c--CceECCCCCEEEEEEcCCCcc
Confidence 112222234579999987776663 22 888888876532 1 111121 1 2489999 4 44444332
Q ss_pred -----CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccCCccc
Q 010784 413 -----LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSNATCP 475 (501)
Q Consensus 413 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~~~~~ 475 (501)
..|.+.|+.++.. ..+... .......|+|||+.|+..+.. ....+.+.++......
T Consensus 344 ~~~~~~~I~v~d~~~g~~-~~LT~~------~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYI-RRLTAN------GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred cCCCCcEEEEEECCCCCe-EECCCC------CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 3688889887764 334211 122357899999988877643 2234566666554443
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.1e-06 Score=74.79 Aligned_cols=255 Identities=14% Similarity=0.137 Sum_probs=150.1
Q ss_pred EEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCceeeeccCCCCceEE
Q 010784 134 IKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVST 211 (501)
Q Consensus 134 i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~ 211 (501)
+++.+..+ .+....+.+|...|..++|+|. +..++..++.+.+|+|.| +..++..+..+ ..+.+
T Consensus 175 v~~l~~~~-fkssq~lp~~g~~IrdlafSp~------------~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wS 240 (463)
T KOG1645|consen 175 VQKLESHD-FKSSQILPGEGSFIRDLAFSPF------------NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWS 240 (463)
T ss_pred eEEeccCC-cchhhcccccchhhhhhccCcc------------ccceeeeeccCceEEEEecccceeeeheecc-CCcee
Confidence 34444333 3445567788889999999994 445899999999999999 56666777777 78999
Q ss_pred EEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccC--CCCceeEEEEeec-----CCeEEEEEeCCCeEE
Q 010784 212 LSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYG--HEKPIKLMSVAGH-----KSFLLVTISKDSKVR 284 (501)
Q Consensus 212 l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~-----~~~~l~s~s~dg~v~ 284 (501)
++|.. .+.++++.|..+|.|.|||++..+. .+..+.+ ...+|..++..+. .+.+++..+.+ +.
T Consensus 241 C~wDl---de~h~IYaGl~nG~VlvyD~R~~~~-----~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~ 310 (463)
T KOG1645|consen 241 CCWDL---DERHVIYAGLQNGMVLVYDMRQPEG-----PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQ 310 (463)
T ss_pred eeecc---CCcceeEEeccCceEEEEEccCCCc-----hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hh
Confidence 99962 4577899999999999999987654 2322222 2334444433321 23344444433 55
Q ss_pred EEECCCCccccceecccceecCCCceeeecCC--CeEEEEeCC-----cEE----EEEcCCCceEeeec-cC-CCc----
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHE--SMLYIASGS-----SVV----TIDLRTMQKVMTPA-IC-KPI---- 347 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~i~----~~d~~~~~~~~~~~-~~-~~~---- 347 (501)
.|++.-... ...++.....++..+++...+ +.+++.... +++ -.|-..+..+...+ ++ .++
T Consensus 311 f~ei~~s~~--~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl 388 (463)
T KOG1645|consen 311 FYEIVFSAE--CLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL 388 (463)
T ss_pred hhhhhcccc--CCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc
Confidence 666543221 112222335566666666655 333333221 111 12333343332111 12 111
Q ss_pred --EEEEEEcCCCcEEEEEcCCc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeC
Q 010784 348 --LHSFSIMPSKSLICTGGIGK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWET 420 (501)
Q Consensus 348 --v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~ 420 (501)
-..+.-.++.++++.-+++. +.+||..+.+.+ +++.- ..+|..++.... .+++.- .|..++||..
T Consensus 389 ~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv------Q~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 389 STTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV------QTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred ccccceeccccccEEEEecCCcceeEEeccchhhee------eeccc-CcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 01222234556666655444 999999997655 66654 477888766433 677775 6778999876
Q ss_pred CC
Q 010784 421 DT 422 (501)
Q Consensus 421 ~~ 422 (501)
++
T Consensus 461 es 462 (463)
T KOG1645|consen 461 ES 462 (463)
T ss_pred CC
Confidence 53
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.65 E-value=2.9e-05 Score=73.98 Aligned_cols=262 Identities=13% Similarity=0.065 Sum_probs=140.1
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCC--C--------ceE-EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHN--G--------PVS-TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~--~--------~v~-~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 244 (501)
+..++.++.+|.+.-+| +|+.+-...... . .+. .+.. .+..++.++.+|.+..+|..+++.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v------~~~~v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV------AGGKVYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE------ECCEEEEEcCCCEEEEEECCCCCC
Confidence 45666666777777777 565554332111 0 111 1121 345677788899999999999875
Q ss_pred cccccceeeccCCCCceeE-EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc-eecCCCceeeecCCCeEEEE
Q 010784 245 RGQQALKATLYGHEKPIKL-MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM-TSVPGVPVDMKCHESMLYIA 322 (501)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~-l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 322 (501)
+-..... ..+.+ ..+. + ..++.++.++.+..+|..+++.+-....... ....+. .......+.+++.
T Consensus 143 ------~W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~-~sP~v~~~~v~~~ 211 (394)
T PRK11138 143 ------AWQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE-SAPATAFGGAIVG 211 (394)
T ss_pred ------cccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC-CCCEEECCEEEEE
Confidence 2222221 12211 1222 3 3566778889999999999987654332110 000000 0111123344554
Q ss_pred eC-CcEEEEEcCCCceEeeeccCCC-------cEEEEEEcC--CCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc
Q 010784 323 SG-SSVVTIDLRTMQKVMTPAICKP-------ILHSFSIMP--SKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH 391 (501)
Q Consensus 323 ~~-~~i~~~d~~~~~~~~~~~~~~~-------~v~~v~~~~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h 391 (501)
.. +.+..+|..+++.+........ ....+..+| .+..++.++.++ +..+|..+++.. -...
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------W~~~-- 283 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------WKRE-- 283 (394)
T ss_pred cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------Eeec--
Confidence 43 4788899999887665432110 011111222 233454555555 999999998754 1111
Q ss_pred ccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 392 VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 392 ~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
......+....+.+++. +.+|.+..+|..+|+.+-...... ......... .+.+|+.++ .+|.|.+.|..+
T Consensus 284 ~~~~~~~~~~~~~vy~~-~~~g~l~ald~~tG~~~W~~~~~~----~~~~~sp~v--~~g~l~v~~--~~G~l~~ld~~t 354 (394)
T PRK11138 284 YGSVNDFAVDGGRIYLV-DQNDRVYALDTRGGVELWSQSDLL----HRLLTAPVL--YNGYLVVGD--SEGYLHWINRED 354 (394)
T ss_pred CCCccCcEEECCEEEEE-cCCCeEEEEECCCCcEEEcccccC----CCcccCCEE--ECCEEEEEe--CCCEEEEEECCC
Confidence 11122233444456555 589999999999997754432100 011111111 245666666 568888888666
Q ss_pred Cc
Q 010784 472 AT 473 (501)
Q Consensus 472 ~~ 473 (501)
++
T Consensus 355 G~ 356 (394)
T PRK11138 355 GR 356 (394)
T ss_pred CC
Confidence 54
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.63 E-value=1.2e-07 Score=56.48 Aligned_cols=39 Identities=38% Similarity=0.891 Sum_probs=36.1
Q ss_pred CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEe
Q 010784 196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238 (501)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd 238 (501)
++++.++.+|.+.|.+++|+ +++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~----~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWS----PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEE----TTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEe----cccccceeeCCCCEEEEEC
Confidence 35788999999999999998 7899999999999999997
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=1e-06 Score=85.69 Aligned_cols=181 Identities=13% Similarity=0.143 Sum_probs=122.3
Q ss_pred CCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecc
Q 010784 221 SGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCV 300 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 300 (501)
++..++-|+....+..+|+++... .+...-..+.|+-++. +++.+.+|...|+|.+-|.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e------~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~--------- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE------TRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSF--------- 207 (1118)
T ss_pred CCcceeecchhhheeeeeccccee------eeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcC---------
Confidence 345666677777777888887653 3333333334554444 4567778888888877777665
Q ss_pred cceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC---------Cc-EEE
Q 010784 301 GMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI---------GK-AMT 370 (501)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---------d~-i~i 370 (501)
+.++++..|.+.|..+.. .|++|++++. |. |++
T Consensus 208 -----------------------------------~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 208 -----------------------------------ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred -----------------------------------ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence 456778889999987765 6778887762 67 899
Q ss_pred EecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCC-ccc-ccccccCCCCCCCcceeeeEe
Q 010784 371 WDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDT-GML-ANSLLCNYPEEADISTGCSAM 446 (501)
Q Consensus 371 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~v~~~~~ 446 (501)
||+|+.+.+ ..+.-+.++ .-+.|+|. ..++..|..|...+-|..+ +.+ ...+.. ......+..+.+
T Consensus 251 YDLRmmral------~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v---~p~~s~i~~fDi 320 (1118)
T KOG1275|consen 251 YDLRMMRAL------SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV---NPNGSGISAFDI 320 (1118)
T ss_pred hhhhhhhcc------CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE---ccCCCcceeEEe
Confidence 999997654 333333333 56778888 4555557889999998332 111 122211 112445899999
Q ss_pred eccccEEEEeecCCCceEEEee
Q 010784 447 AVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 447 s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
|++|+.|+.|. .+|.|.+|.
T Consensus 321 Ssn~~alafgd--~~g~v~~wa 340 (1118)
T KOG1275|consen 321 SSNGDALAFGD--HEGHVNLWA 340 (1118)
T ss_pred cCCCceEEEec--ccCcEeeec
Confidence 99999999998 779999998
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=8.8e-05 Score=65.65 Aligned_cols=220 Identities=10% Similarity=0.015 Sum_probs=131.1
Q ss_pred ceEEeeC-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEee-ccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 114 DHILLDN-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLF-PLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 114 ~~~~~~~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
..++|++ ++.++.+.-..+.|..|+..++......+.+ ...+++. + ++.+++ +...+ +.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~-------------~g~l~v-~~~~~-~~ 63 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP-------------DGRLYV-ADSGG-IA 63 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECT-------------TSEEEE-EETTC-EE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEcc-------------CCEEEE-EEcCc-eE
Confidence 3578887 8888888888899999998875322222222 6677777 4 545444 44444 45
Q ss_pred Eec--CCceeeecc----C-CCCceEEEEeeecCCCCCCEEEEeeCC--------CcEEEEeccCCCccccccceeeccC
Q 010784 192 LWW--KGSCQRCFK----G-HNGPVSTLSDKLLGDGSGKILASGGED--------ATVRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 192 vwd--~~~~~~~~~----~-h~~~v~~l~~s~~~~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
++| +++...... . .....+.+++. ++|++.++.... |.|..++.. ++ ......
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd----~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-------~~~~~~ 131 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVD----PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-------VTVVAD 131 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-----TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-------EEEEEE
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEc----CCCCEEEEecCCCccccccccceEEECCC-Ce-------EEEEec
Confidence 557 443322221 1 34567788885 889877775543 446666665 22 222222
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc-ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA-VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
.-...+.|+|+|+...++++-+..+.|..+++..... +...
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~-------------------------------------- 173 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR-------------------------------------- 173 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE--------------------------------------
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeee--------------------------------------
Confidence 3345678999984444556777888899998864321 1000
Q ss_pred ceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-CC--eEEEEe
Q 010784 336 QKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-PY--KIVTGG 409 (501)
Q Consensus 336 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~--~~l~~g 409 (501)
+....+....+..-.+++..+|++.++....+ |.++|.. ++.. ..+......+++++|. ++ .++++.
T Consensus 174 ~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~------~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 174 RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL------REIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE------EEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE------EEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 01111222224577899999998888776556 9999987 5433 4444444588999994 44 566553
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.4e-06 Score=72.89 Aligned_cols=254 Identities=7% Similarity=-0.058 Sum_probs=143.3
Q ss_pred eEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 190 IRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 190 i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
+++.+ +-+....+.+|...|..++|+| ....++..++.+..|+|.|+++.. .+..+..+ ..+++.+|.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~------~vssy~a~-~~~wSC~wD 244 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSC------VVSSYIAY-NQIWSCCWD 244 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccce------eeeheecc-CCceeeeec
Confidence 55555 3344456678899999999983 233388899999999999999976 46666666 789999999
Q ss_pred ecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee-------eecCCCeEEEEeCCcEEEEEcCCC--ceE
Q 010784 268 GHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD-------MKCHESMLYIASGSSVVTIDLRTM--QKV 338 (501)
Q Consensus 268 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~d~~~~--~~~ 338 (501)
-++.++++.|-..|.|.+||++..+.......... ....+.. ..+.-.++++++......|.+.-. ...
T Consensus 245 lde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~--t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 245 LDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANV--TINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLP 322 (463)
T ss_pred cCCcceeEEeccCceEEEEEccCCCchHhhhhhhh--ccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCC
Confidence 88888999999999999999997653221110000 0001111 122223334443334555544211 111
Q ss_pred eeec-cCCCcEEEEEEcCCCcE-EEEEcC-----------------CcEEEEecCCCCCCCCCCCcccccCcccCeEEEE
Q 010784 339 MTPA-ICKPILHSFSIMPSKSL-ICTGGI-----------------GKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLH 399 (501)
Q Consensus 339 ~~~~-~~~~~v~~v~~~~~~~~-l~~~~~-----------------d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~ 399 (501)
...+ ...+...+++..+-.+. +++.-. |+-.||.-+..-- .. ..-+-+.. ..+.
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs--~~~kl~t~--~ai~ 395 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GS--KQTKLSTT--QAIR 395 (463)
T ss_pred cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CC--cccccccc--ccee
Confidence 1111 12455556666654333 333222 2233333222100 00 00000111 1121
Q ss_pred ecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec-c-ccEEEEeecCCCceEEEeeccC
Q 010784 400 MDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV-S-GCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 400 ~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~-g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
-.++ .++..|..-+.+.+||..+++.++++.. +.+|..++... + +.+|++-. |..++++..+.
T Consensus 396 ~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~------~epv~Dicp~~~n~~syLa~LT---d~~v~Iyk~es 462 (463)
T KOG1645|consen 396 AVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL------SEPVLDICPNDTNGSSYLALLT---DDRVHIYKNES 462 (463)
T ss_pred ccccccEEEEecCCcceeEEeccchhheeeeccc------CcceeecceeecCCcchhhhee---cceEEEEecCC
Confidence 2233 5566666778899999999999999953 34566655443 2 34666654 35788876543
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.57 E-value=1.3e-06 Score=85.14 Aligned_cols=190 Identities=15% Similarity=0.129 Sum_probs=124.5
Q ss_pred cCcEEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 177 TENVLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
++..++-|+....+..+| +.+..+...-..+.|.-|+ .+++++++|...|+|.+-|.++.+ .++++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR------~Nnr~lf~G~t~G~V~LrD~~s~~------~iht~ 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR------YNNRNLFCGDTRGTVFLRDPNSFE------TIHTF 213 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE------ecCcEEEeecccceEEeecCCcCc------eeeee
Confidence 345666777767777777 4444444443444577777 478899999999999999999987 59999
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRT 334 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (501)
..|++.|..+.+ .++.|++++..+...... .+.-+.+||++.
T Consensus 214 ~aHs~siSDfDv---~GNlLitCG~S~R~~~l~-----------------------------------~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 214 DAHSGSISDFDV---QGNLLITCGYSMRRYNLA-----------------------------------MDPFVKVYDLRM 255 (1118)
T ss_pred eccccceeeeec---cCCeEEEeeccccccccc-----------------------------------ccchhhhhhhhh
Confidence 999999997776 467899988654321111 111244555555
Q ss_pred CceEeeeccCCCcEEEEEEcCC-CcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecC
Q 010784 335 MQKVMTPAICKPILHSFSIMPS-KSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRD 411 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~ 411 (501)
.+.+.-+.-+.++ .-+.|.|. ...+++++..+ ..+-|..+.... ...+..+......+.+++++++ ..++.|..
T Consensus 256 mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 256 MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 5444433333333 34566775 34455555444 888884433221 1222333444556999999999 99999999
Q ss_pred CCcEEEEe
Q 010784 412 DLRINIWE 419 (501)
Q Consensus 412 dg~i~iwd 419 (501)
+|.|.+|.
T Consensus 333 ~g~v~~wa 340 (1118)
T KOG1275|consen 333 EGHVNLWA 340 (1118)
T ss_pred cCcEeeec
Confidence 99999997
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.52 E-value=3.1e-05 Score=68.29 Aligned_cols=211 Identities=14% Similarity=0.063 Sum_probs=125.9
Q ss_pred CCcEEEEeccCCCccccccceeeccC---CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYG---HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG 307 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 307 (501)
+|.|..||..+++. +-.... ....+ +..+. ++..+++++.++.|..||..+++.+..... ..
T Consensus 2 ~g~l~~~d~~tG~~------~W~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~------~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKE------LWSYDLGPGIGGPV-ATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL------PG 66 (238)
T ss_dssp TSEEEEEETTTTEE------EEEEECSSSCSSEE-ETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC------SS
T ss_pred CCEEEEEECCCCCE------EEEEECCCCCCCcc-ceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec------cc
Confidence 68899999988764 333321 22222 11222 344677778999999999999976544332 11
Q ss_pred Cce-eeecCCCeEEEEe-CCcEEEEEcCCCceEeee-ccCC---CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCC
Q 010784 308 VPV-DMKCHESMLYIAS-GSSVVTIDLRTMQKVMTP-AICK---PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAV 380 (501)
Q Consensus 308 ~~~-~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~-~~~~---~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~ 380 (501)
... ......+.+++.+ ++.+..+|.++++.+... .... ..........++..++.+..++ |..+|.++++.+
T Consensus 67 ~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~- 145 (238)
T PF13360_consen 67 PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL- 145 (238)
T ss_dssp CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEE-
T ss_pred cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEE-
Confidence 111 1244556666665 458999999999998874 3221 1112222222366777777555 999999998764
Q ss_pred CCCCcccccCcccC-----------eEEEEecCCeEEEEecCCCc-EEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 381 KPQPMAELDGHVGS-----------VTQLHMDPYKIVTGGRDDLR-INIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 381 ~~~~~~~~~~h~~~-----------v~~l~~~~~~~l~~gs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
......... ...+.+..+.++++ +.++. +.+ |+.+++.+-... ...+.. ....
T Consensus 146 -----w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~g~~~~~-d~~tg~~~w~~~-------~~~~~~-~~~~ 210 (238)
T PF13360_consen 146 -----WKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS-SGDGRVVAV-DLATGEKLWSKP-------ISGIYS-LPSV 210 (238)
T ss_dssp -----EEEESSTT-SS--EEEETTEEEEEECCTTEEEEE-CCTSSEEEE-ETTTTEEEEEEC-------SS-ECE-CEEC
T ss_pred -----EEeecCCCCCCcceeeecccccceEEECCEEEEE-cCCCeEEEE-ECCCCCEEEEec-------CCCccC-Ccee
Confidence 222221111 13334444466665 46775 555 999998653321 111222 2557
Q ss_pred cccEEEEeecCCCceEEEeeccCCcc
Q 010784 449 SGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 449 ~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
++..|+.++ .++.|..||..+++.
T Consensus 211 ~~~~l~~~~--~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 211 DGGTLYVTS--SDGRLYALDLKTGKV 234 (238)
T ss_dssp CCTEEEEEE--TTTEEEEEETTTTEE
T ss_pred eCCEEEEEe--CCCEEEEEECCCCCE
Confidence 888888887 569999999998864
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2.7e-05 Score=75.78 Aligned_cols=195 Identities=14% Similarity=0.086 Sum_probs=128.6
Q ss_pred cCcEEEEeeCCCceEEec-CCceeeeccCCCCc-eEEEEeeecCCCCCCEEEEeeCCCc-----EEEEeccCCCcccccc
Q 010784 177 TENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGP-VSTLSDKLLGDGSGKILASGGEDAT-----VRLWSLSSSGKRGQQA 249 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~-v~~l~~s~~~~~~~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~ 249 (501)
.+..++.|+.+|.|.+.+ .-+.++.++.+... |..+.. ....++|++.+.|+. ++||+++..+......
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~----~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYI----LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred CCceEEEeeccccEEEecccceeeehheecchhhhhHhhc----ccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 678999999999999999 44555888888777 544443 134468888777654 8999998754322122
Q ss_pred ce--eeccC-----CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecC--CCe-E
Q 010784 250 LK--ATLYG-----HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCH--ESM-L 319 (501)
Q Consensus 250 ~~--~~~~~-----~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 319 (501)
++ ..+.. ...++.+++++. +-+.++.|-.+|.|..+.-.-...... ...........+..+.+. +.. +
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCceeE
Confidence 22 11212 356788999985 677899999999998885322111000 111111233344444333 333 6
Q ss_pred EEEeCCcEEEEEcCCCce-EeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCC
Q 010784 320 YIASGSSVVTIDLRTMQK-VMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQ 377 (501)
Q Consensus 320 ~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~ 377 (501)
++++...|.+|.+....+ ...+..|...+.|..+++....+++++...+.+|+....+
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG 246 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence 788888999999985552 4457778888999999876665777777779999988644
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.4e-05 Score=77.20 Aligned_cols=188 Identities=17% Similarity=0.152 Sum_probs=126.6
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
++|++++ +.+++-|..+|.+++.+... .+ ++...|+.. .. +|.+++||+.||+|.|
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~-------------~Gey~asCS~DGkv~I 97 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------IL-------------EGEYVASCSDDGKVVI 97 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------cc-------------CCceEEEecCCCcEEE
Confidence 6777776 57899999999999999873 33 444456554 22 7999999999999999
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecC-CCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeec
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLG-DGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGH 269 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 269 (501)
-. +.+....+. -..++.+++++|.. ....+.+++|+.-| +.++.-+-.+. . ....+..-.++|.++.|.
T Consensus 98 ~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k-~~v~l~~~eG~I~~i~W~-- 169 (846)
T KOG2066|consen 98 GSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---K-DSVVLSEGEGPIHSIKWR-- 169 (846)
T ss_pred eeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---c-cceeeecCccceEEEEec--
Confidence 86 444444333 35689999997431 12356889999888 77765433221 0 112355567899999995
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceeccc-ceecCCCceeeecCCC-eEEEEeCCcEEEEEcCC
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVG-MTSVPGVPVDMKCHES-MLYIASGSSVVTIDLRT 334 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~~~ 334 (501)
+++++-++.+| |+|||+.+++.+....... .......+..+.|.++ .+++.-+.+|.+..++.
T Consensus 170 -g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 170 -GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred -CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence 56888888777 8999999887655443322 1133334445555544 45566677888888873
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.48 E-value=0.00028 Score=62.08 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=134.2
Q ss_pred cCcEEEEeeCCCc-eEEec--CCceeeeccCCCCce--EEEEeeecCCCCCCEEEEe-----eCCCcEEEEeccCCCccc
Q 010784 177 TENVLVTSSCDHS-IRLWW--KGSCQRCFKGHNGPV--STLSDKLLGDGSGKILASG-----GEDATVRLWSLSSSGKRG 246 (501)
Q Consensus 177 ~~~~l~s~~~dg~-i~vwd--~~~~~~~~~~h~~~v--~~l~~s~~~~~~~~~l~sg-----~~dg~i~iwd~~~~~~~~ 246 (501)
....++.+-.-|+ ..+|| +++....+....+.- -.-.|+ ++|++|++. ...|.|-|||...+-.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs----~dG~~LytTEnd~~~g~G~IgVyd~~~~~~-- 89 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS----PDGRLLYTTENDYETGRGVIGVYDAARGYR-- 89 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc----CCCCEEEEeccccCCCcEEEEEEECcCCcE--
Confidence 4556666666655 44566 555554443322211 124676 899999985 3458899999994332
Q ss_pred cccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCc
Q 010784 247 QQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSS 326 (501)
Q Consensus 247 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (501)
.+..+..|.-.-..+.+.| ++..|+.+- |-|.- ..++++.. + .+-.....
T Consensus 90 ---ri~E~~s~GIGPHel~l~p-DG~tLvVAN--GGI~T-hpd~GR~k---------------L--------Nl~tM~ps 139 (305)
T PF07433_consen 90 ---RIGEFPSHGIGPHELLLMP-DGETLVVAN--GGIET-HPDSGRAK---------------L--------NLDTMQPS 139 (305)
T ss_pred ---EEeEecCCCcChhhEEEcC-CCCEEEEEc--CCCcc-CcccCcee---------------c--------ChhhcCCc
Confidence 4666666665556677887 665555543 11211 01111100 0 00011124
Q ss_pred EEEEEcCCCceEee--e--ccCCCcEEEEEEcCCCcEEEEEcC-----Cc---EEEEecCCCCCCCCCCCcccccCcccC
Q 010784 327 VVTIDLRTMQKVMT--P--AICKPILHSFSIMPSKSLICTGGI-----GK---AMTWDIRRSQDAVKPQPMAELDGHVGS 394 (501)
Q Consensus 327 i~~~d~~~~~~~~~--~--~~~~~~v~~v~~~~~~~~l~~~~~-----d~---i~iwd~~~~~~~~~~~~~~~~~~h~~~ 394 (501)
+...|..+++.+.. + ..|.-.|..+++.++|..++..-. +. +-+++....-.. ...+-.....-.+.
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~-~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL-LPAPEEQWRRLNGY 218 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee-ccCChHHHHhhCCc
Confidence 55567777777655 3 236778999999999876665431 12 333333321000 00011112233567
Q ss_pred eEEEEecCC--eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 395 VTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 395 v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
+-+|+++++ .+.+++-.-+.+.+||..+++.+..... ..+..++-.+++ ++++.+
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-------~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-------PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-------CceeeeeecCCc-eEEeCC
Confidence 899999998 4556666788999999999999887742 235556666666 666654
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00014 Score=71.03 Aligned_cols=205 Identities=12% Similarity=0.097 Sum_probs=127.9
Q ss_pred EeeCCcEEEeecCCeeeEEEEecccccccceecccCCcc-eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc-----e
Q 010784 117 LLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKAR-ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS-----I 190 (501)
Q Consensus 117 ~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-----i 190 (501)
++++++..+|.|+.+|.|.+.+-. .+.++.++.+... |..+.... ..++|++-+.|+. +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~-------------~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILN-------------KQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhccc-------------CceEEEEEeecCCCCceEE
Confidence 467889999999999998887755 5666788888888 55444433 3478888777754 8
Q ss_pred EEec-------C-Ccee---eecc----CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 191 RLWW-------K-GSCQ---RCFK----GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 191 ~vwd-------~-~~~~---~~~~----~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
+||+ + ..++ +.+. ....++.+++.+ .+-+.+|.|-.||.|..+.-+--...+. ......
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs----~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~~~~~ 168 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS----EDLKTIVCGFTNGLVICYKGDILRDRGS--RQDYSH 168 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE----ccccEEEEEecCcEEEEEcCcchhcccc--ceeeec
Confidence 9997 1 2233 1111 135678888887 6788999999999999985432211110 122223
Q ss_pred CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce-ecCCCceeeecCCCe--EEEEeCCcEEEEEc
Q 010784 256 GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT-SVPGVPVDMKCHESM--LYIASGSSVVTIDL 332 (501)
Q Consensus 256 ~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~i~~~d~ 332 (501)
....+|+.+.+.. ++..++.+..-..|.+|.+.... .. .... .......+..+++.. .+++.+..+.+||.
T Consensus 169 ~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr~-p~----~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~s 242 (933)
T KOG2114|consen 169 RGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGRT-PS----LKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDS 242 (933)
T ss_pred cCCCCceeeEEec-CCceeEEEEecceeEEEEecCCC-cc----eeeeccCCccceeeecCCCCccEEEecCceEEEEcC
Confidence 3467999999985 55442333344679999988432 11 1111 223333444444433 34444558999998
Q ss_pred CCCceEeeec-cCCCcE
Q 010784 333 RTMQKVMTPA-ICKPIL 348 (501)
Q Consensus 333 ~~~~~~~~~~-~~~~~v 348 (501)
...+....+. +|....
T Consensus 243 d~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 243 DGRGPCFAFEVGEKKEM 259 (933)
T ss_pred CCcceeeeecCCCeEEE
Confidence 8777766766 554443
No 324
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=98.30 E-value=1.9e-06 Score=73.99 Aligned_cols=57 Identities=18% Similarity=0.422 Sum_probs=49.6
Q ss_pred CCCcccccccHHHHHHHHh-----cCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCcc
Q 010784 15 PSTTAIADLNEDAVAHCAL-----NLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQV 71 (501)
Q Consensus 15 ~~~~~~~~Lp~e~~~~i~~-----~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~ 71 (501)
|....|..||+||+..||. .||.++|.++|+|||.|+..++++.+|+..|-+.|.+.
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s 163 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRS 163 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 3344577899999999985 56789999999999999999999999999999998743
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.29 E-value=0.0002 Score=72.78 Aligned_cols=244 Identities=11% Similarity=0.039 Sum_probs=138.4
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v 285 (501)
...|.++.|. .+.+.++.+..+|.|.+-|..+.. ......-...|.+++|+| ++..++..+.++++.+
T Consensus 68 d~~i~s~~fl----~d~~~i~v~~~~G~iilvd~et~~-------~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 68 DDEIVSVQFL----ADTNSICVITALGDIILVDPETLE-------LEIVGNVDNGISAASWSP-DEELLALITGRQTLLF 135 (1265)
T ss_pred CcceEEEEEe----cccceEEEEecCCcEEEEcccccc-------eeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEE
Confidence 3688999997 778888888999999999887764 333444567899999998 7888888888777766
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCe-EEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM-LYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
-.- +-.++............+....+.|.... .+=.+.+.....+..............+.=++|.|--||+++++..
T Consensus 136 mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 136 MTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred Eec-cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 432 22222111111111112222222222111 1111111111111100000000000112234689999999999843
Q ss_pred ----CC-c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEe---cCCCcEEEEeCCCcccccccccCCC
Q 010784 365 ----IG-K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGG---RDDLRINIWETDTGMLANSLLCNYP 434 (501)
Q Consensus 365 ----~d-~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~g---s~dg~i~iwd~~~~~~~~~~~~~~~ 434 (501)
.| + |++||.. +..- ..-..-.+.-.+++|-|. .++++- +.|+.|.+|. ++|.....|....+
T Consensus 215 ~~~~~~~RkirV~drE-g~Ln------s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p 286 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALN------STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFP 286 (1265)
T ss_pred EeccCCceeEEEeccc-chhh------cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCc
Confidence 34 6 9999987 3322 111122333457899998 565552 3566899998 45666555544333
Q ss_pred CCCCcceeeeEeeccccEEEEeecC-CCceEEEeeccC
Q 010784 435 EEADISTGCSAMAVSGCRIVTASYG-EPGLLQFRDFSN 471 (501)
Q Consensus 435 ~~~~~~v~~~~~s~~g~~l~s~~~d-~~g~i~~w~~~~ 471 (501)
. ....+..++|+.++..|++-... +...|++|-+.+
T Consensus 287 ~-de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 287 L-DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred c-cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 2 22338999999999999983322 344599987654
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.00012 Score=70.00 Aligned_cols=156 Identities=16% Similarity=0.159 Sum_probs=104.1
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
+.--+++..+.+++.|+..|.+.+++-..+........+-.+.+..+..++ +..++|.|+..|.|.+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-------------~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-------------VEYLVAAGTASGRVSV 102 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-------------hhHhhhhhcCCceEEe
Confidence 344456778899999999999999998876444444445455566666676 6788888888999988
Q ss_pred ec--C---Cceee--ec-cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 193 WW--K---GSCQR--CF-KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 193 wd--~---~~~~~--~~-~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
+- . +..+. .+ +.|...|+|++|+ +++..+++|...|.|..-.++.... -.-..+.+..-.+.|..|
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws----~~~~k~ysGD~~Gkv~~~~L~s~~~--~~~~~q~il~~ds~IVQl 176 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWS----KNGMKLYSGDSQGKVVLTELDSRQA--FLSKSQEILSEDSEIVQL 176 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEec----ccccEEeecCCCceEEEEEechhhh--hccccceeeccCcceEEe
Confidence 85 1 11111 11 2478899999997 8999999999999999988887210 001233344455677777
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~ 291 (501)
... .+.+|++.... -.+++.+.+
T Consensus 177 D~~--q~~LLVStl~r--~~Lc~tE~e 199 (726)
T KOG3621|consen 177 DYL--QSYLLVSTLTR--CILCQTEAE 199 (726)
T ss_pred ecc--cceehHhhhhh--hheeecchh
Confidence 765 44455544432 344555443
No 327
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.3e-07 Score=77.54 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=43.1
Q ss_pred cccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHH
Q 010784 18 TAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLF 64 (501)
Q Consensus 18 ~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~ 64 (501)
.....||+|+++.||+.|.-++|.+++.||++||++++++.+|+.+-
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD 142 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD 142 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec
Confidence 33567999999999999999999999999999999999999999654
No 328
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.0013 Score=62.77 Aligned_cols=209 Identities=8% Similarity=-0.022 Sum_probs=112.3
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcE-EEEeeCC---CceEEec-CCceeeeccCC
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENV-LVTSSCD---HSIRLWW-KGSCQRCFKGH 205 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d---g~i~vwd-~~~~~~~~~~h 205 (501)
...+.+-|.... . .+.+.... .+....|+| +|+. ++..+.+ ..|.++| .+.....+...
T Consensus 168 ~~~l~~~d~dg~-~-~~~~~~~~-~~~~p~wSp-------------DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~ 231 (419)
T PRK04043 168 KSNIVLADYTLT-Y-QKVIVKGG-LNIFPKWAN-------------KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS 231 (419)
T ss_pred cceEEEECCCCC-c-eeEEccCC-CeEeEEECC-------------CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC
Confidence 455556565532 2 33233333 677889998 7774 5544443 4566777 33333333334
Q ss_pred CCceEEEEeeecCCCCCCEEE-EeeCC--CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCC
Q 010784 206 NGPVSTLSDKLLGDGSGKILA-SGGED--ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDS 281 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~-sg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg 281 (501)
.+......|+ |+|+.++ +.+.+ ..|.++|+.++. ...+..+........|+| +++.|+..+ ..+
T Consensus 232 ~g~~~~~~~S----PDG~~la~~~~~~g~~~Iy~~dl~~g~-------~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g 299 (419)
T PRK04043 232 QGMLVVSDVS----KDGSKLLLTMAPKGQPDIYLYDTNTKT-------LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLG 299 (419)
T ss_pred CCcEEeeEEC----CCCCEEEEEEccCCCcEEEEEECCCCc-------EEEcccCCCccCccEECC-CCCEEEEEECCCC
Confidence 5556667887 7887665 44434 457777876654 233333333233457998 555444444 333
Q ss_pred --eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC----------CcEEEEEcCCCceEeeeccCCCcEE
Q 010784 282 --KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG----------SSVVTIDLRTMQKVMTPAICKPILH 349 (501)
Q Consensus 282 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~v~ 349 (501)
.|.+.|+.+++..+... . ......++.+++.++.... ..|.+.|+.++.... +... ....
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~-----~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~ 371 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVF-----H-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQ 371 (419)
T ss_pred CceEEEEECCCCCeEeCcc-----C-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcC
Confidence 57788888765422111 0 0011233334443433321 257888888776533 3222 2333
Q ss_pred EEEEcCCCcEEEEEcC-Cc---EEEEecCC
Q 010784 350 SFSIMPSKSLICTGGI-GK---AMTWDIRR 375 (501)
Q Consensus 350 ~v~~~~~~~~l~~~~~-d~---i~iwd~~~ 375 (501)
...|+|||+.++..+. ++ +.+.++..
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 5889999998776552 22 66666654
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.18 E-value=3.3e-06 Score=79.18 Aligned_cols=203 Identities=15% Similarity=0.239 Sum_probs=131.7
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
...+.|++++-.. +..+++.|..+|.|.+-. ....-....+|..+.++++|. .-|.+.||.|
T Consensus 56 tqy~kcva~~y~~-----------d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwn---eLDtn~LAag 121 (783)
T KOG1008|consen 56 TQYVKCVASFYGN-----------DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWN---ELDTNHLAAG 121 (783)
T ss_pred CCCceeehhhcCC-----------chhhhhhccccCceEEeecCCcccccceecccccccccccccc---cccHHHHHhh
Confidence 3457788776532 446888999999998875 112234556788999999997 3566788877
Q ss_pred e----CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 229 G----EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 229 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
- .|..+.|||+.+.-..+...... ..+......+++|. .+..++++|.....++++|++......
T Consensus 122 ldkhrnds~~~Iwdi~s~ltvPke~~~f-s~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~--------- 190 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTVPKESPLF-SSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSV--------- 190 (783)
T ss_pred hhhhcccCCccceecccccCCCcccccc-ccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhh---------
Confidence 4 36689999998863211111111 11233345577887 478889999998899999998532100
Q ss_pred cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC-CCcEEEEEcCCcEEEEe-cCCCCCCCCC
Q 010784 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP-SKSLICTGGIGKAMTWD-IRRSQDAVKP 382 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~i~iwd-~~~~~~~~~~ 382 (501)
.......+..+.+.| .+.++++-.+|-|.+|| .++.+..
T Consensus 191 ------------------------------------~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienp--- 231 (783)
T KOG1008|consen 191 ------------------------------------SSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENP--- 231 (783)
T ss_pred ------------------------------------hhhhhhhcccceecCCCCCceeccccCceeeccchhhhccH---
Confidence 001134456677888 67888888755599999 5554332
Q ss_pred CCcccccCccc----CeEEEEecCC--eEEEEec-CCCcEEEEeCC
Q 010784 383 QPMAELDGHVG----SVTQLHMDPY--KIVTGGR-DDLRINIWETD 421 (501)
Q Consensus 383 ~~~~~~~~h~~----~v~~l~~~~~--~~l~~gs-~dg~i~iwd~~ 421 (501)
+..+..... .+..++|.|. .++++.+ ..++|+++|+.
T Consensus 232 --l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 232 --LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred --HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 333332222 4899999998 5555554 45679999986
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.16 E-value=0.0016 Score=66.51 Aligned_cols=235 Identities=13% Similarity=0.067 Sum_probs=134.0
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
+.|.++.|.. +++.++.+..+|.|.+-| ....+.....-...|.+++|+ ++++.++..+..+
T Consensus 69 ~~i~s~~fl~-------------d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS----~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLA-------------DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWS----PDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEec-------------ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeec----CCCcEEEEEeCCc
Confidence 4677777776 788899999999999998 333333333456789999997 8999999888888
Q ss_pred cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC-----ccccceecccceecCC
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS-----SAVRSSCCVGMTSVPG 307 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~-----~~~~~~~~~~~~~~~~ 307 (501)
++.+-+-. ... +....-+.. -. ....++.+++...=.-+.-..+ +.+.............
T Consensus 132 tll~mT~~-f~~------i~E~~L~~d------~~--~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~ 196 (1265)
T KOG1920|consen 132 TLLFMTKD-FEP------IAEKPLDAD------DE--RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD 196 (1265)
T ss_pred EEEEEecc-ccc------hhccccccc------cc--cccccceecccccceeeecchhhhcccccccccccccchhhcc
Confidence 87665432 110 111000100 00 0112223332221111111111 1111111111112344
Q ss_pred CceeeecCCCeEEEEe-------C-CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc---CCc-EEEEecCC
Q 010784 308 VPVDMKCHESMLYIAS-------G-SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG---IGK-AMTWDIRR 375 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~-------~-~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~---~d~-i~iwd~~~ 375 (501)
.-..+.|.+++.+++. + ..+++||-+ +..-.+-....+.-.+++|-|.|..+++-. ++. |.+|.-+.
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 4556777777755554 2 379999987 444333333345556899999999998765 444 88887553
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC-eEEEE---ecCCCcEEEEeCCCcc
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTG---GRDDLRINIWETDTGM 424 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~---gs~dg~i~iwd~~~~~ 424 (501)
-.. ......+......|..++|+.+ .+++. ......|++|-+.+..
T Consensus 276 L~h---g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 276 LRH---GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccc---cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 221 1112223333445999999998 77766 4445559999988743
No 331
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=2.2e-06 Score=80.40 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=135.7
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe----CCC
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS----KDS 281 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s----~dg 281 (501)
...+.|+++.. +.+..+++.|..+|.|.+-.++..... -.....++..+.++++|++-+.+.|++|- .|.
T Consensus 56 tqy~kcva~~y--~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 56 TQYVKCVASFY--GNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCCceeehhhc--CCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 34556666531 233468889999999999888765431 13455678889999999987778888773 356
Q ss_pred eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeec-cCCCcEEEEEEcCCCcEE
Q 010784 282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKSLI 360 (501)
Q Consensus 282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l 360 (501)
.+.+||+.++-...... ..+. +......+++|..+.+++
T Consensus 130 ~~~Iwdi~s~ltvPke~----------------------------------------~~fs~~~l~gqns~cwlrd~klv 169 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKES----------------------------------------PLFSSSTLDGQNSVCWLRDTKLV 169 (783)
T ss_pred CccceecccccCCCccc----------------------------------------cccccccccCccccccccCcchh
Confidence 78999998762100000 0000 012334588888889999
Q ss_pred EEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEe-CCCc-ccccccccCCCC
Q 010784 361 CTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWE-TDTG-MLANSLLCNYPE 435 (501)
Q Consensus 361 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd-~~~~-~~~~~~~~~~~~ 435 (501)
.+|...+ +.++|++..... ...+ .+..+..+.++|- .++++. .||.|.+|| ..+- .++..+. +.+.
T Consensus 170 laGm~sr~~~ifdlRqs~~~-----~~sv--nTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~-~~~N 240 (783)
T KOG1008|consen 170 LAGMTSRSVHIFDLRQSLDS-----VSSV--NTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIIL-RNEN 240 (783)
T ss_pred hcccccchhhhhhhhhhhhh-----hhhh--hhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHh-hCCC
Confidence 9999887 999999953211 1222 2446777888884 777774 699999999 4332 2333332 2212
Q ss_pred CCCcceeeeEeecccc-EEEEeecCCCceEEEeeccC
Q 010784 436 EADISTGCSAMAVSGC-RIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 436 ~~~~~v~~~~~s~~g~-~l~s~~~d~~g~i~~w~~~~ 471 (501)
.....+..++|+|... .+++... +.++|+.+++..
T Consensus 241 ~~~~~l~~~aycPtrtglla~l~R-dS~tIrlydi~~ 276 (783)
T KOG1008|consen 241 KKPKQLFALAYCPTRTGLLAVLSR-DSITIRLYDICV 276 (783)
T ss_pred CcccceeeEEeccCCcchhhhhcc-CcceEEEecccc
Confidence 2233588999999754 4555544 678999999764
No 332
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.12 E-value=0.014 Score=58.80 Aligned_cols=331 Identities=10% Similarity=0.071 Sum_probs=173.6
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
+++...+.+...++.++.++.+...++..+.-....-+.-...|.|+.++|.++.+. ..++++.|..+..+.+
T Consensus 490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~-------~s~~~aVG~Ws~~~~~ 562 (1096)
T KOG1897|consen 490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPN-------KSRLLAVGLWSDISMI 562 (1096)
T ss_pred eEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCC-------cceEEEEEeecceEEE
Confidence 455555555556665555566666665543211111122346799999998653221 1247888888877766
Q ss_pred ec---CCceeee--ccC--CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 193 WW---KGSCQRC--FKG--HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 193 wd---~~~~~~~--~~~--h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
-- ....+.. +.+ -...|.-..|- .+..+|.++..||.+.-+.++...-. ..-.+...--+.|+.--.
T Consensus 563 l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e----~d~~yLlvalgdG~l~~fv~d~~tg~--lsd~Kk~~lGt~P~~Lr~ 636 (1096)
T KOG1897|consen 563 LTFLPDLILITHEQLSGEIIPRSILLTTFE----GDIHYLLVALGDGALLYFVLDINTGQ--LSDRKKVTLGTQPISLRT 636 (1096)
T ss_pred EEECCCcceeeeeccCCCccchheeeEEee----ccceEEEEEcCCceEEEEEEEcccce--EccccccccCCCCcEEEE
Confidence 52 2211111 111 12334444552 55889999999999987766543210 000010111122333223
Q ss_pred EeecCCeEEEEEeC--------CC---------------------------------eEEEEECCCCccccceeccccee
Q 010784 266 VAGHKSFLLVTISK--------DS---------------------------------KVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 266 ~~~~~~~~l~s~s~--------dg---------------------------------~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
|.....+.+++++. .+ .+++.-+..-+.+ ...+..
T Consensus 637 f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl----~irtvp 712 (1096)
T KOG1897|consen 637 FSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKL----HIRTVP 712 (1096)
T ss_pred EeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhc----ceeeec
Confidence 33222222222221 11 1222221111100 000112
Q ss_pred cCCCceeeecCCC-eEEEEeC----------------CcEEEEEcCCCceEeeeccC----CCcEEEEEEcCC-CcEEEE
Q 010784 305 VPGVPVDMKCHES-MLYIASG----------------SSVVTIDLRTMQKVMTPAIC----KPILHSFSIMPS-KSLICT 362 (501)
Q Consensus 305 ~~~~~~~~~~~~~-~~~~~~~----------------~~i~~~d~~~~~~~~~~~~~----~~~v~~v~~~~~-~~~l~~ 362 (501)
....+..+...+. ..+.... +.++++|-.+.+.+...+-. .-.+.++.|..| +.++++
T Consensus 713 l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vV 792 (1096)
T KOG1897|consen 713 LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVV 792 (1096)
T ss_pred CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEE
Confidence 2223333333332 1221111 13667777766655433321 123555668877 778887
Q ss_pred EcC----------Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCccccccccc
Q 010784 363 GGI----------GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 363 ~~~----------d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 431 (501)
|.. .+ |.++.....+.+ +.+.+..- .+.+.++..-..+++|+ -...|++|+..+.+.++.-
T Consensus 793 GT~~v~Pde~ep~~GRIivfe~~e~~~L---~~v~e~~v-~Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e-- 864 (1096)
T KOG1897|consen 793 GTGLVYPDENEPVNGRIIVFEFEELNSL---ELVAETVV-KGAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIE-- 864 (1096)
T ss_pred EEEeeccCCCCcccceEEEEEEecCCce---eeeeeeee-ccceeehhhhCCeEEEe--cCcEEEEEEccccceehhh--
Confidence 762 24 888887773322 22333322 46677776666677776 5678999999988776665
Q ss_pred CCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 432 NYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 432 ~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
..+..++..+.....|..|++|. -.+.|.+..+...+
T Consensus 865 ---~~~~~~~~aL~l~v~gdeI~VgD--lm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 865 ---CNISNPIIALDLQVKGDEIAVGD--LMRSITLLQYKGDE 901 (1096)
T ss_pred ---hcccCCeEEEEEEecCcEEEEee--ccceEEEEEEeccC
Confidence 45677889999999999999997 55778777766555
No 333
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.05 E-value=0.0024 Score=56.37 Aligned_cols=203 Identities=14% Similarity=0.070 Sum_probs=121.6
Q ss_pred EEEEeecCCeEEEEEeCCCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC------CcEEEEEcC-C
Q 010784 263 LMSVAGHKSFLLVTISKDSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG------SSVVTIDLR-T 334 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~-~ 334 (501)
.++.+|.....++.+-.-|. ..+||.++++..............+. -.++.+...++.... +.|.+||.. +
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH-g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH-GVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC-EEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 45667766667777766554 67899998876543322111111111 012222333444322 379999999 7
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCC------------------c-EEEEecCCCCCCCCCCCcccc--cCccc
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIG------------------K-AMTWDIRRSQDAVKPQPMAEL--DGHVG 393 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------------------~-i~iwd~~~~~~~~~~~~~~~~--~~h~~ 393 (501)
.+.+..+..|.-....+.+.|||+.|+++-.+ . +...|..+++.+ ....+ ..|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll----~q~~Lp~~~~~l 163 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL----EQVELPPDLHQL 163 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee----eeeecCcccccc
Confidence 78888898887777889999999777766421 1 334455555433 11224 34677
Q ss_pred CeEEEEecCC-eEEEEecCCCc-------EEEEeCCCcccccccccCC--CCCCCcceeeeEeeccccEEEEeecCCCce
Q 010784 394 SVTQLHMDPY-KIVTGGRDDLR-------INIWETDTGMLANSLLCNY--PEEADISTGCSAMAVSGCRIVTASYGEPGL 463 (501)
Q Consensus 394 ~v~~l~~~~~-~~l~~gs~dg~-------i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~ 463 (501)
.|..|+++++ .++.+.-..|. |-+++- ++.+..+.... ...-...+-+++++.+|.++++.+. .-+.
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP-rGg~ 240 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP-RGGR 240 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC-CCCE
Confidence 8889999888 55555433332 333332 22222221110 0122467899999999999988775 6789
Q ss_pred EEEeeccCCc
Q 010784 464 LQFRDFSNAT 473 (501)
Q Consensus 464 i~~w~~~~~~ 473 (501)
+.+||..++.
T Consensus 241 ~~~~d~~tg~ 250 (305)
T PF07433_consen 241 VAVWDAATGR 250 (305)
T ss_pred EEEEECCCCC
Confidence 9999976654
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.00072 Score=63.33 Aligned_cols=249 Identities=11% Similarity=0.008 Sum_probs=125.5
Q ss_pred ceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccc-------------------------------------cccc
Q 010784 208 PVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRG-------------------------------------QQAL 250 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-------------------------------------~~~~ 250 (501)
.|+.+.|+ ++...|+.|...|.|.+|.....+... -..+
T Consensus 3 ~v~~vs~a----~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P 78 (395)
T PF08596_consen 3 SVTHVSFA----PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLP 78 (395)
T ss_dssp -EEEEEEE----TTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEE
T ss_pred eEEEEEec----CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCc
Confidence 57888887 677788889999999998765432210 0112
Q ss_pred eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce---ecCCCceeeec-----CCC-----
Q 010784 251 KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT---SVPGVPVDMKC-----HES----- 317 (501)
Q Consensus 251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~----- 317 (501)
...+....++|++++.+ +-.+++.|..+|.+.|.|+|....+......... .....+.++.| .++
T Consensus 79 ~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred hhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 22334456889999987 4558999999999999999988766553322210 11111222222 122
Q ss_pred eEEEEeC-CcEEEEEcC--C-Cce----EeeeccCCCcEEEEE-EcCC---------------------CcEEEEEcCCc
Q 010784 318 MLYIASG-SSVVTIDLR--T-MQK----VMTPAICKPILHSFS-IMPS---------------------KSLICTGGIGK 367 (501)
Q Consensus 318 ~~~~~~~-~~i~~~d~~--~-~~~----~~~~~~~~~~v~~v~-~~~~---------------------~~~l~~~~~d~ 367 (501)
.+++.+. +.+.+|.+- . +.. ......+.++|..+. ++.+ ..+++++++..
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 2333333 466666553 1 111 111123456665554 3211 12666666666
Q ss_pred EEEEecCCCCCCCCCCCcccccCcccCeEEEEec-----CC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcce
Q 010784 368 AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD-----PY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIST 441 (501)
Q Consensus 368 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 441 (501)
+|++...+.+.. +...........+.+- .. ..|++-..+|.|+++.+..-+.+..+.... ......+
T Consensus 237 irv~~~~~~k~~------~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~-~~d~~~~ 309 (395)
T PF08596_consen 237 IRVFKPPKSKGA------HKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP-PLDSRRL 309 (395)
T ss_dssp EEEE-TT---EE------EEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHH
T ss_pred eEEEeCCCCccc------ceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC-ccccccc
Confidence 999999886543 2222222223333332 23 666676799999999999988887775432 1123456
Q ss_pred eeeEeeccccEEEEeecCCCceEEEeec
Q 010784 442 GCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 442 ~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
...+++++|..++-.+..+-..+.+|.-
T Consensus 310 ~~ssis~~Gdi~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp TT-EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred cccEECCCCCEEEEeCcccEEEEEEEcc
Confidence 6788999999888776433333444443
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=0.0055 Score=51.74 Aligned_cols=104 Identities=9% Similarity=-0.102 Sum_probs=63.0
Q ss_pred CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCce
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSC 198 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~ 198 (501)
-|.+++.|...|.+++-+.++| .....+..- +.|.+-+-.. +++..+..|+.|++.+.-| +..+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~-~~vk~~a~~d------------~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVIL-ETVKVRAQCD------------FDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred ECCEEEEEEccCcEEEEEecch-hheeeeeeh-hhhccceEEc------------CCCceEEEecCCCcEEEecccccce
Confidence 3667999999999999999987 333333221 2222222111 1789999999999999999 6667
Q ss_pred eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCC
Q 010784 199 QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSS 242 (501)
Q Consensus 199 ~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~ 242 (501)
+...+...+...+-+. ++....|+.+...|.|.--..+..
T Consensus 128 VykskcgG~~f~sP~i----~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 128 VYKSKCGGGTFVSPVI----APGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEecccCCceecccee----cCCCceEEEEeccceEEEEccCCC
Confidence 7666543332222222 343344555555666655454443
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.05 E-value=0.0013 Score=63.78 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=90.7
Q ss_pred CCcEEEEEcCC-----CceEeeeccCCCcEEEEEEcCCCcEEEEEcC-Cc-EEEEecCCCCCCCCC------CCcccccC
Q 010784 324 GSSVVTIDLRT-----MQKVMTPAICKPILHSFSIMPSKSLICTGGI-GK-AMTWDIRRSQDAVKP------QPMAELDG 390 (501)
Q Consensus 324 ~~~i~~~d~~~-----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~------~~~~~~~~ 390 (501)
++.|.++|.++ .+.+..+. -......+.++|||+++++++. +. +.++|+.+.+..... ..+.+.+-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35688888887 33444444 3566788999999999988884 44 999999986542100 01112221
Q ss_pred cccCeEEEEecCC-eEEEEecCCCcEEEEeCCC----------cccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 391 HVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT----------GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 391 h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
.......+|+++ ..+++-.-|..|..||+.. ...+..+..|...+|.....+=.-.|||++|++...
T Consensus 374 -GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 374 -GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred -CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 223345678888 8888888899999999976 345566666666677666666667889999998653
No 337
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.04 E-value=0.0037 Score=58.42 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=69.3
Q ss_pred ceEEeeCCcEEEeecCCeeeEEE---Eeccc----ccccceeccc---CC--cceeEEEeeccCcCcccccCCCCcCcEE
Q 010784 114 DHILLDNNDIFSTQGSSIQNIKI---DNFLS----ESYYRATLSD---HK--ARITCMRLFPLHETSLFRSEPQRTENVL 181 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g~~d~~i~v---w~~~~----~~~~~~~~~~---h~--~~V~~~~~~~~~~~~~~~~~~~~~~~~l 181 (501)
.++++++++.++|.+..+..+.+ |+... .........+ +. +.|+++.+.|...... ....+|...+
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~--s~~~~dw~~I 82 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKR--STGGPDWTCI 82 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccc--cCCCCCcEEE
Confidence 35678899999999877776666 53311 1122222221 22 5899999888433221 2333577899
Q ss_pred EEeeCCCceEEec-CCceeeeccCCCCceEEEEee
Q 010784 182 VTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDK 215 (501)
Q Consensus 182 ~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s 215 (501)
+.|..+|.|++|. +|..+..-.-|..+|..+.+.
T Consensus 83 ~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 83 AVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred EEEecccEEEEEeccchHHHHHhcCccceEEEEec
Confidence 9999999999998 888887777899999999875
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.03 E-value=0.0069 Score=54.61 Aligned_cols=235 Identities=12% Similarity=0.117 Sum_probs=133.4
Q ss_pred cCcEEEEeeCCCceEEecC---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce--
Q 010784 177 TENVLVTSSCDHSIRLWWK---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK-- 251 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-- 251 (501)
.++.|+.|..+| +.+++. ....... +...|..+... ++-+.+++-+ |+.+.++++............
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl----~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVL----PELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEe----cccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 578999999888 888873 2222222 33348888876 5555555544 599999999875531110000
Q ss_pred ------eeccCCCCceeEEE-EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 252 ------ATLYGHEKPIKLMS-VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 252 ------~~~~~~~~~v~~l~-~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
.........+...+ .....+...+.......|.+|.......... ........+..+..+.+.++.++++..
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp~~~~~i~~~~~~i~v~~~ 156 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLPDPPSSIAFLGNKICVGTS 156 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEEcCCCcEEEEEeCCEEEEEeC
Confidence 00112233444444 1112333344444456899988876421110 223344677889999999999999999
Q ss_pred CcEEEEEcCCCceEeeeccC------------CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcc
Q 010784 325 SSVVTIDLRTMQKVMTPAIC------------KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHV 392 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~------------~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~ 392 (501)
....+.|+.++.....+... ..++..+.. +++.+|++-.+ .-...|. .++.. . -..+.- .
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~-~g~fv~~-~G~~~--r--~~~i~W-~ 228 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDN-IGVFVNK-NGEPS--R--KSTIQW-S 228 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecc-eEEEEcC-CCCcC--c--ccEEEc-C
Confidence 99999999977654433211 122333333 34566665322 2222333 33322 1 122222 2
Q ss_pred cCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784 393 GSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 393 ~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
..+.++++....+++. .++.|.||++.++++++++.
T Consensus 229 ~~p~~~~~~~pyli~~--~~~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 229 SAPQSVAYSSPYLIAF--SSNSIEVRSLETGELVQTIP 264 (275)
T ss_pred CchhEEEEECCEEEEE--CCCEEEEEECcCCcEEEEEE
Confidence 3566777755555554 34569999999999998884
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.03 E-value=0.006 Score=58.05 Aligned_cols=210 Identities=12% Similarity=0.046 Sum_probs=101.8
Q ss_pred ceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccc-cceeeccCCCCceeEEEE
Q 010784 189 SIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQ-ALKATLYGHEKPIKLMSV 266 (501)
Q Consensus 189 ~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~ 266 (501)
.|.||+ .|+.+..+.-..+.|.++.|. +...|+.-..||.++++|+..... ... ..+....-....+....+
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt-----~~e~LvvV~~dG~v~vy~~~G~~~-fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWT-----DDEELVVVQSDGTVRVYDLFGEFQ-FSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEEC-----CCCeEEEEEcCCEEEEEeCCCcee-echhhhccccCccccccccccc
Confidence 599999 888887765444899999995 456677778999999999864320 000 001111111222222222
Q ss_pred eecCCeEEEEEeCCCeEEEEECCCCc-cccceeccccee----cCCC---ceeeecCCC-eEEEEeCCcEEEEEcCCCce
Q 010784 267 AGHKSFLLVTISKDSKVRVWDTSTSS-AVRSSCCVGMTS----VPGV---PVDMKCHES-MLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 267 ~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~----~~~~---~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~ 337 (501)
. .+|-.+++ .++.+.+.+-.... ..+......... .... +..+..... .+.++.+..+.+.+-...+.
T Consensus 136 ~-~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 136 Y-KNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred C-CCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence 2 13433333 33444443222211 101000000000 0000 001111111 12222334444444322211
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCC-eEEEEecCCCc
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPY-KIVTGGRDDLR 414 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~-~~l~~gs~dg~ 414 (501)
+. ..+++..+++||+++++|.-.+++ +.+.+..-.+.. .++... ......+.|..+ .+++. ....
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~------~e~~~~~~~~p~~~~WCG~dav~l~--~~~~ 280 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL------CEFDTDSKSPPKQMAWCGNDAVVLS--WEDE 280 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee------EEeecCcCCCCcEEEEECCCcEEEE--eCCE
Confidence 11 246899999999999999998877 888876544322 333322 345567777665 33333 2334
Q ss_pred EEEEe
Q 010784 415 INIWE 419 (501)
Q Consensus 415 i~iwd 419 (501)
|.+..
T Consensus 281 l~lvg 285 (410)
T PF04841_consen 281 LLLVG 285 (410)
T ss_pred EEEEC
Confidence 55554
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.99 E-value=0.012 Score=57.83 Aligned_cols=273 Identities=11% Similarity=0.001 Sum_probs=139.9
Q ss_pred EeecCCeeeEEEEecccccccceecccCCccee-E-EEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEec--CCcee
Q 010784 125 STQGSSIQNIKIDNFLSESYYRATLSDHKARIT-C-MRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLWW--KGSCQ 199 (501)
Q Consensus 125 ~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~-~-~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vwd--~~~~~ 199 (501)
+..++.++.+.-.|..+| +.+........... + ..+.. ...-.+ ..++.++.+|.|.-+| +++.+
T Consensus 64 vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~---------g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 64 MYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNR---------GVAYWDPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred EEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccC---------CcEEccCCeEEEecCCCeEEEEECCCCCEe
Confidence 334555688888899886 54444432221000 0 00000 000023 6788888899999998 77776
Q ss_pred eeccCCCCc-----eE-EEEeeecCCCCCCEEEEee---------CCCcEEEEeccCCCccccccceeeccCC-C-----
Q 010784 200 RCFKGHNGP-----VS-TLSDKLLGDGSGKILASGG---------EDATVRLWSLSSSGKRGQQALKATLYGH-E----- 258 (501)
Q Consensus 200 ~~~~~h~~~-----v~-~l~~s~~~~~~~~~l~sg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~----- 258 (501)
-.+...... +. ...+ .+..++.++ .+|.+..+|..+++. +-.+... .
T Consensus 134 W~~~~~~~~~~~~~i~ssP~v------~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~------~W~~~~~~~~~~~~ 201 (488)
T cd00216 134 WKFGNNDQVPPGYTMTGAPTI------VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL------LWRFYTTEPDPNAF 201 (488)
T ss_pred eeecCCCCcCcceEecCCCEE------ECCEEEEeccccccccCCCCcEEEEEECCCCce------eeEeeccCCCcCCC
Confidence 555432210 11 1122 123455554 367888999988875 2221110 0
Q ss_pred --------------Ccee-EEEEeecCCeEEEEEeCCC------------------eEEEEECCCCccccceecccce--
Q 010784 259 --------------KPIK-LMSVAGHKSFLLVTISKDS------------------KVRVWDTSTSSAVRSSCCVGMT-- 303 (501)
Q Consensus 259 --------------~~v~-~l~~~~~~~~~l~s~s~dg------------------~v~vwd~~~~~~~~~~~~~~~~-- 303 (501)
..|. ...+.+ .+..++.++.++ .|.-+|..+++..-........
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~ 280 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW 280 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence 0111 123332 344666676554 7999999999876554322110
Q ss_pred --ecCCCce--eee-cCCC---eEEEEe-CCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEE-----------
Q 010784 304 --SVPGVPV--DMK-CHES---MLYIAS-GSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTG----------- 363 (501)
Q Consensus 304 --~~~~~~~--~~~-~~~~---~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~----------- 363 (501)
.....+. .+. .+.. .+++.+ .+.+..+|.++++.+...... ...++.+| +..++..
T Consensus 281 ~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 281 DYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred ccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccc
Confidence 0011111 111 1111 123332 458999999999998765421 11123333 2222211
Q ss_pred ------cCCc-EEEEecCCCCCCCCCCCcccccCc--c------cCe--EEEEecCCeEEEEecCCCcEEEEeCCCcccc
Q 010784 364 ------GIGK-AMTWDIRRSQDAVKPQPMAELDGH--V------GSV--TQLHMDPYKIVTGGRDDLRINIWETDTGMLA 426 (501)
Q Consensus 364 ------~~d~-i~iwd~~~~~~~~~~~~~~~~~~h--~------~~v--~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~ 426 (501)
..++ +.-.|..+++.+ -+.... . .+. ..+.... .++..++.||.|+.+|..+|+.+
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~------W~~~~~~~~~~~~~g~~~~~~~~~~~g-~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVV------WEKREGTIRDSWNIGFPHWGGSLATAG-NLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEe------eEeeCCccccccccCCcccCcceEecC-CeEEEECCCCeEEEEECCCCcee
Confidence 1234 778888887654 111110 0 111 1223333 34555569999999999999999
Q ss_pred ccccc
Q 010784 427 NSLLC 431 (501)
Q Consensus 427 ~~~~~ 431 (501)
-++..
T Consensus 430 W~~~~ 434 (488)
T cd00216 430 WKFRT 434 (488)
T ss_pred eEEEC
Confidence 88753
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=0.017 Score=54.97 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=60.0
Q ss_pred cCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeC
Q 010784 343 ICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET 420 (501)
Q Consensus 343 ~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~ 420 (501)
..+..+.+++++|+...++.|+.|+ |.+||...+. ..+....-.++.++|+|+ .+++.|+..|.+.+||+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 3578899999999999999999999 9999998753 223334556789999999 88888889999999998
Q ss_pred CC
Q 010784 421 DT 422 (501)
Q Consensus 421 ~~ 422 (501)
.-
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 53
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.0074 Score=59.16 Aligned_cols=272 Identities=11% Similarity=0.095 Sum_probs=145.8
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCC------ceE--EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcccc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG------PVS--TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~------~v~--~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 247 (501)
+..++.++.++.|.-.| +++.+-.+..... .+. .+.. .++..++.++.+|.|..+|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-----~~~~~V~v~~~~g~v~AlD~~TG~~--- 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-----WDPRKVFFGTFDGRLVALDAETGKQ--- 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-----ccCCeEEEecCCCeEEEEECCCCCE---
Confidence 45666677788888888 6666544432221 110 1111 1226788888999999999999874
Q ss_pred ccceeeccCCCC-----cee-EEEEeecCCeEEEEEe---------CCCeEEEEECCCCccccceecccce--ecC----
Q 010784 248 QALKATLYGHEK-----PIK-LMSVAGHKSFLLVTIS---------KDSKVRVWDTSTSSAVRSSCCVGMT--SVP---- 306 (501)
Q Consensus 248 ~~~~~~~~~~~~-----~v~-~l~~~~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~~~~~~~--~~~---- 306 (501)
+-....... .+. ...+. ++ .++.++ .++.+..+|..+++.+-........ ...
T Consensus 133 ---~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 133 ---VWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred ---eeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 322221111 011 11222 23 444443 3688999999999876544332110 000
Q ss_pred ---------CCc---eeeecCCCeEEEEeCC-------------------cEEEEEcCCCceEeeeccCCCcE------E
Q 010784 307 ---------GVP---VDMKCHESMLYIASGS-------------------SVVTIDLRTMQKVMTPAICKPIL------H 349 (501)
Q Consensus 307 ---------~~~---~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~~~~v------~ 349 (501)
..+ ..+......+++.+++ .+.-+|..+++....++.-.... .
T Consensus 207 ~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s 286 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN 286 (488)
T ss_pred CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC
Confidence 000 1112234556666532 58899999999987765311111 0
Q ss_pred EEEEc----CCCc---EEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEE-------------
Q 010784 350 SFSIM----PSKS---LICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTG------------- 408 (501)
Q Consensus 350 ~v~~~----~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~------------- 408 (501)
...+. -++. .++.++.++ +...|.++++.+ -..... ...++.+|+.+++.
T Consensus 287 ~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~------W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~ 357 (488)
T cd00216 287 QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI------SARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKK 357 (488)
T ss_pred CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe------eEeEee---ccccccCCceEEEccccccccCccccc
Confidence 00111 1333 577777777 999999998765 221110 11233444433332
Q ss_pred ----ecCCCcEEEEeCCCcccccccccCCCCCC---CcceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 409 ----GRDDLRINIWETDTGMLANSLLCNYPEEA---DISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 409 ----gs~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
...+|.+.-.|..+|+.+-+......... ......-.....+..|+.++ .+|.|+.+|..+++.
T Consensus 358 ~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~--~dG~l~ald~~tG~~ 428 (488)
T cd00216 358 KRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA--ADGYFRAFDATTGKE 428 (488)
T ss_pred CCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC--CCCeEEEEECCCCce
Confidence 12467898999999987766642210000 01111111223567888887 569999888766653
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=7.8e-05 Score=70.05 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=60.9
Q ss_pred cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC
Q 010784 151 DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE 230 (501)
Q Consensus 151 ~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~ 230 (501)
..+..|.|++++| +...|+.|+.||+|.+||....+..+....-..+.++|+ |+|.++++|+.
T Consensus 257 pL~s~v~~ca~sp-------------~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWH----p~gai~~V~s~ 319 (545)
T PF11768_consen 257 PLPSQVICCARSP-------------SEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWH----PDGAIFVVGSE 319 (545)
T ss_pred ecCCcceEEecCc-------------ccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEc----CCCcEEEEEcC
Confidence 3455666666666 899999999999999999444444444455667899998 89999999999
Q ss_pred CCcEEEEeccCCC
Q 010784 231 DATVRLWSLSSSG 243 (501)
Q Consensus 231 dg~i~iwd~~~~~ 243 (501)
.|.+.+||+.-..
T Consensus 320 qGelQ~FD~ALsp 332 (545)
T PF11768_consen 320 QGELQCFDMALSP 332 (545)
T ss_pred CceEEEEEeecCc
Confidence 9999999987654
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.013 Score=51.04 Aligned_cols=207 Identities=12% Similarity=0.087 Sum_probs=103.7
Q ss_pred eecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCC-CCceEEEEeeecCCCCCCE
Q 010784 147 ATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGH-NGPVSTLSDKLLGDGSGKI 224 (501)
Q Consensus 147 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h-~~~v~~l~~s~~~~~~~~~ 224 (501)
+.+.+-...+..|+|.|+ ++.++++....+.|...+ .|+.++.+.-. .+..-.+++. .++.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd------------~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~----g~~~~ 78 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPD------------TGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL----GNGRY 78 (248)
T ss_dssp EE-TT--S-EEEEEEETT------------TTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-----STTEE
T ss_pred eECCCccCCccccEEcCC------------CCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE----CCCEE
Confidence 345555667999999994 456777777788887777 77777766433 3566778875 56666
Q ss_pred EEEeeCCCcEEEEeccCCCccccccceee-----ccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCC---Cccccc
Q 010784 225 LASGGEDATVRLWSLSSSGKRGQQALKAT-----LYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTST---SSAVRS 296 (501)
Q Consensus 225 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~---~~~~~~ 296 (501)
+++--.++.+.++++.............. ...++..+-.++|.+.... |+.+-......+|.+.. ......
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceee
Confidence 66655689999999854332111111111 1235667899999985454 44555666666776654 111110
Q ss_pred eeccc---ceecCCCceeee--cCCCeEEEEeCC--cEEEEEcCCCceEeeeccCC---------CcEEEEEEcCCCcEE
Q 010784 297 SCCVG---MTSVPGVPVDMK--CHESMLYIASGS--SVVTIDLRTMQKVMTPAICK---------PILHSFSIMPSKSLI 360 (501)
Q Consensus 297 ~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~l 360 (501)
..... .......+..+. ...+.+++.++. .+..+| .+++.+..+.-.. .....|+|.++|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 00000 001111223333 334456666653 677777 6666654443222 357899999999877
Q ss_pred EEEcCCcEEEE
Q 010784 361 CTGGIGKAMTW 371 (501)
Q Consensus 361 ~~~~~d~i~iw 371 (501)
+++--+-.+++
T Consensus 237 IvsEpNlfy~f 247 (248)
T PF06977_consen 237 IVSEPNLFYRF 247 (248)
T ss_dssp EEETTTEEEEE
T ss_pred EEcCCceEEEe
Confidence 77654334443
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.83 E-value=0.0011 Score=48.53 Aligned_cols=104 Identities=11% Similarity=0.047 Sum_probs=70.6
Q ss_pred CceEEee---C-CcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 113 HDHILLD---N-NDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 113 i~~~~~~---~-~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
|++|++. . ...-|+.|+.|..|++|+-+ ..+..+.. .+.|+++.-.. +..|+.+..+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~--------------~~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLG--------------GGRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcC--------------CCEEEEEecCC
Confidence 4566654 2 33788999999999999954 44444443 46688887775 47899999999
Q ss_pred ceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEE
Q 010784 189 SIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVR 235 (501)
Q Consensus 189 ~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~ 235 (501)
+|-+|+....+-..+. +..+.++.+.-.....-..|++|-.+|.|-
T Consensus 64 TVGvY~~~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDRSQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeCcceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999995544444443 334777776511111123688888888874
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.0017 Score=63.72 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=78.9
Q ss_pred CceEEeeCCcEEEeecCC----eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 113 HDHILLDNNDIFSTQGSS----IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~----d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
.+-..|+|...++|.++. .|.+.|+--. | ++.+... -+-.+++++|+| ..-.|+.|-.-|
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadt-G-EPqr~Vt-~P~hatSLCWHp-------------e~~vLa~gwe~g 81 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADT-G-EPQRDVT-YPVHATSLCWHP-------------EEFVLAQGWEMG 81 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecC-C-CCCcccc-cceehhhhccCh-------------HHHHHhhccccc
Confidence 445567788888776653 5777777533 2 3222221 122356799999 677888888899
Q ss_pred ceEEec-CCcee-eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccC
Q 010784 189 SIRLWW-KGSCQ-RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSS 241 (501)
Q Consensus 189 ~i~vwd-~~~~~-~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~ 241 (501)
.+.+|+ ..+.. .....|..+|..+.|| ++|..++++..-|.|.+|..+.
T Consensus 82 ~~~v~~~~~~e~htv~~th~a~i~~l~wS----~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 82 VSDVQKTNTTETHTVVETHPAPIQGLDWS----HDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeEEEecCCceeeeeccCCCCCceeEEec----CCCCeEEEcCCCceeEEEEeee
Confidence 999998 32333 3345699999999998 8999999999999999998874
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.0097 Score=53.73 Aligned_cols=221 Identities=10% Similarity=0.005 Sum_probs=116.1
Q ss_pred CCCC-EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 220 GSGK-ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 220 ~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
++.. ++.+--..+.|.-|+..++.. ..+. +.+.+.++.... .+..|+++.. .+.+++.+++.......
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~-~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPETGKK-------RVFP-SPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGKITLLA 102 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCCcCce-------EEEE-CCCCcccceeec-CCCeEEEEcc--ccEEEeccCCceeEEec
Confidence 3444 555666778888898887642 3333 233334444442 4445555443 35666765544321111
Q ss_pred cccceecCCCceeeecCCCeEEEEe--C-----C-----cEEEEEcC-CCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784 299 CVGMTSVPGVPVDMKCHESMLYIAS--G-----S-----SVVTIDLR-TMQKVMTPAICKPILHSFSIMPSKSLICTGGI 365 (501)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~-----~i~~~d~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 365 (501)
.................+++.+... + . .-.+|.+. .+..+..+..+-..-+.++||||++.+..+..
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1111111112222222222222211 1 0 11344444 45555555555556678999999977777764
Q ss_pred C-c-EEEEecCC--CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCC-cEEEEeCCCcccccccccCCCCCCCc
Q 010784 366 G-K-AMTWDIRR--SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDL-RINIWETDTGMLANSLLCNYPEEADI 439 (501)
Q Consensus 366 d-~-i~iwd~~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~ 439 (501)
. + |.-|++.. +... .......+....+..-.++.+.+ .+.+++-.+| .|.+|+.. |+++..+.. +..
T Consensus 183 ~~~~i~r~~~d~~~g~~~-~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-----P~~ 255 (307)
T COG3386 183 PANRIHRYDLDPATGPIG-GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-----PVK 255 (307)
T ss_pred CCCeEEEEecCcccCccC-CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC-----CCC
Confidence 3 4 88777763 2111 01111222233456667778887 6664443444 89999988 999888843 335
Q ss_pred ceeeeEee-ccccEEEEeec
Q 010784 440 STGCSAMA-VSGCRIVTASY 458 (501)
Q Consensus 440 ~v~~~~~s-~~g~~l~s~~~ 458 (501)
.+++++|- ++.+.|+..+.
T Consensus 256 ~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 256 RPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCccceEeCCCcCEEEEEec
Confidence 67788886 45566555543
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.78 E-value=0.0048 Score=58.77 Aligned_cols=226 Identities=8% Similarity=-0.004 Sum_probs=114.7
Q ss_pred CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784 206 NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 206 ~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v 285 (501)
.-....+.++ |+|++++.+ .||...++...... ... .+.-....|.+ .+.+++-...+.|.+
T Consensus 32 ~~~p~~ls~n----pngr~v~V~-g~geY~iyt~~~~r--------~k~---~G~g~~~vw~~--~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 32 EIYPQSLSHN----PNGRFVLVC-GDGEYEIYTALAWR--------NKA---FGSGLSFVWSS--RNRYAVLESSSTIKI 93 (443)
T ss_dssp SS--SEEEE-----TTSSEEEEE-ETTEEEEEETTTTE--------EEE---EEE-SEEEE-T--SSEEEEE-TTS-EEE
T ss_pred CcCCeeEEEC----CCCCEEEEE-cCCEEEEEEccCCc--------ccc---cCceeEEEEec--CccEEEEECCCeEEE
Confidence 3346778885 889998884 57788888743322 111 23334567875 345777777888999
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI 365 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 365 (501)
+.--+...... ...+..+..+-. +..+.+...+.|.+||..+++.+..+... .|..+.|+++|++++..++
T Consensus 94 ~kn~~~~~~k~------i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 94 YKNFKNEVVKS------IKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EETTEE-TT-----------SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S
T ss_pred EEcCccccceE------EcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC
Confidence 63222211111 111211222222 55555555567999999999999988743 4899999999999999998
Q ss_pred CcEEEEecCCCCC----C-CCCCCcccccCcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784 366 GKAMTWDIRRSQD----A-VKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADIS 440 (501)
Q Consensus 366 d~i~iwd~~~~~~----~-~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (501)
+.+.|++...... . .-...+..+..-...|.+.+|..+-++.+. .. .++.+=-.....+..+ ..+
T Consensus 165 ~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT-~~-~lkYl~~Ge~~~i~~l--------d~~ 234 (443)
T PF04053_consen 165 DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTT-SN-HLKYLVNGETGIIAHL--------DKP 234 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE--TT-EEEEEETTEEEEEEE---------SS-
T ss_pred CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEc-CC-eEEEEEcCCcceEEEc--------CCc
Confidence 8877776554200 0 000011222222457888889888444442 33 6777432222334444 345
Q ss_pred eeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 441 TGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+.-+...+..+.+.... .++.|..+.+.
T Consensus 235 ~yllgy~~~~~~ly~~D--r~~~v~~~~ld 262 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLID--RDGNVISYELD 262 (443)
T ss_dssp -EEEEEETTTTEEEEE---TT--EEEEE--
T ss_pred eEEEEEEccCCEEEEEE--CCCCEEEEEEC
Confidence 66677777667777766 55777777654
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.77 E-value=0.0068 Score=54.30 Aligned_cols=260 Identities=8% Similarity=0.067 Sum_probs=132.7
Q ss_pred eeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee----------CCCceEEec--CCcee
Q 010784 132 QNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS----------CDHSIRLWW--KGSCQ 199 (501)
Q Consensus 132 ~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~dg~i~vwd--~~~~~ 199 (501)
+.+.|.|..++ +.+-.+.. +-.-.+..+| +++.+.+++ ..-.|.+|| +-...
T Consensus 17 ~rv~viD~d~~-k~lGmi~~--g~~~~~~~sp-------------dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 17 SRVYVIDADSG-KLLGMIDT--GFLGNVALSP-------------DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp EEEEEEETTTT-EEEEEEEE--ESSEEEEE-T-------------TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred ceEEEEECCCC-cEEEEeec--ccCCceeECC-------------CCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 57888888774 54444432 1222355677 778777643 344688999 33323
Q ss_pred ee--ccC-CCCc----eEEEEeeecCCCCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecC
Q 010784 200 RC--FKG-HNGP----VSTLSDKLLGDGSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK 270 (501)
Q Consensus 200 ~~--~~~-h~~~----v~~l~~s~~~~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 270 (501)
.. +.. |... ...++++ .++++++.... -.+|.|-|+...+ .+..+. -.+ |.-.-|..
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls----~dgk~~~V~N~TPa~SVtVVDl~~~k------vv~ei~-~PG---C~~iyP~~ 146 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALS----ADGKFLYVQNFTPATSVTVVDLAAKK------VVGEID-TPG---CWLIYPSG 146 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-----TTSSEEEEEEESSSEEEEEEETTTTE------EEEEEE-GTS---EEEEEEEE
T ss_pred ceEecCCcchheecccccceEEc----cCCcEEEEEccCCCCeEEEEECCCCc------eeeeec-CCC---EEEEEecC
Confidence 22 221 1111 1122332 45555544322 2345566665543 233222 111 22333444
Q ss_pred CeEEEEEeCCCeEEEEECC-CCccccceecccceecCCC-ceee---ecCCC-eEEEEeCCcEEEEEcCCCceE--eeec
Q 010784 271 SFLLVTISKDSKVRVWDTS-TSSAVRSSCCVGMTSVPGV-PVDM---KCHES-MLYIASGSSVVTIDLRTMQKV--MTPA 342 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~~~~~~~i~~~d~~~~~~~--~~~~ 342 (501)
+..|.+-+.||.+....+. .++...... ..+..... ++.- ..... ..++.-.+.++..|+...... ..+.
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t--~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKST--KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEE--EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeec--cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 4568888999999999888 444432111 11111111 1111 12222 344455677887777655432 1111
Q ss_pred cC----------CCcEEEEEEcCCCcEEEEEc--------CC--c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec
Q 010784 343 IC----------KPILHSFSIMPSKSLICTGG--------IG--K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD 401 (501)
Q Consensus 343 ~~----------~~~v~~v~~~~~~~~l~~~~--------~d--~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 401 (501)
.- .+.-.-+++++....|.+.. .+ . |-++|+.+.+.+ ..+.. ..++.+|.++
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv------~Ri~l-~~~~~Si~Vs 297 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV------ARIPL-EHPIDSIAVS 297 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE------EEEEE-EEEESEEEEE
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE------EEEeC-CCccceEEEc
Confidence 00 12223466776544443322 12 3 788888887654 55553 3567899998
Q ss_pred CC--eEE-EEecCCCcEEEEeCCCcccccccc
Q 010784 402 PY--KIV-TGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 402 ~~--~~l-~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
.+ .+| +....++.+.+||..+|+.++++.
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 87 444 444568999999999999999884
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.76 E-value=0.0018 Score=47.46 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=72.0
Q ss_pred eeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEE
Q 010784 156 ITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVR 235 (501)
Q Consensus 156 V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~ 235 (501)
|++|++...... ..+.|+.|+.|..|++|+....+..+.. .+.|+++.-. .+..++.+..+|+|-
T Consensus 2 V~al~~~d~d~d---------g~~eLlvGs~D~~IRvf~~~e~~~Ei~e-~~~v~~L~~~-----~~~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGD---------GENELLVGSDDFEIRVFKGDEIVAEITE-TDKVTSLCSL-----GGGRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCC---------CcceEEEecCCcEEEEEeCCcEEEEEec-ccceEEEEEc-----CCCEEEEEecCCEEE
Confidence 667777653110 1378999999999999997778877764 4567777753 447899999999999
Q ss_pred EEeccCCCccccccceeeccCCCCceeEEEEeecC---CeEEEEEeCCCeEE
Q 010784 236 LWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHK---SFLLVTISKDSKVR 284 (501)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~~~l~s~s~dg~v~ 284 (501)
+|+-... +-..+.... +.++.+..-+ ...|++|-.+|.|-
T Consensus 67 vY~~~~R--------lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQR--------LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcce--------eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9987542 333443333 5566554322 34788888888774
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.74 E-value=0.019 Score=51.54 Aligned_cols=243 Identities=13% Similarity=0.050 Sum_probs=128.8
Q ss_pred CceEEeeCCcEEEeecCC----------eeeEEEEecccccccceecc---cCCcc----eeEEEeeccCcCcccccCCC
Q 010784 113 HDHILLDNNDIFSTQGSS----------IQNIKIDNFLSESYYRATLS---DHKAR----ITCMRLFPLHETSLFRSEPQ 175 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~----------d~~i~vw~~~~~~~~~~~~~---~h~~~----V~~~~~~~~~~~~~~~~~~~ 175 (501)
...+.++|+++.+.+.+. .-.|.+||..+- .+...+. +|... .+.++++.
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~------------ 104 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSA------------ 104 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-T------------
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchheecccccceEEcc------------
Confidence 556788999998887544 567899998873 3333221 11111 11223333
Q ss_pred CcCcEEEEeeC--CCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784 176 RTENVLVTSSC--DHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 176 ~~~~~l~s~~~--dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 251 (501)
++++++.... ...|.|-| .++.+..+.- ..+ .+.+ |. . ..-+.+-+.||.+....++...+.. .+..
T Consensus 105 -dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC-~~iy-P~--~-~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t 175 (342)
T PF06433_consen 105 -DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGC-WLIY-PS--G-NRGFSMLCGDGSLLTVTLDADGKEA-QKST 175 (342)
T ss_dssp -TSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSE-EEEE-EE--E-TTEEEEEETTSCEEEEEETSTSSEE-EEEE
T ss_pred -CCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCE-EEEE-ec--C-CCceEEEecCCceEEEEECCCCCEe-Eeec
Confidence 4444443322 23344444 2333333221 111 1122 22 2 2457788889999999998655422 1122
Q ss_pred eeccCCCCcee-EEEEeecCCeEEEEEeCCCeEEEEECCCCccccc--eecccc-------eecCCCceeeecCCCeEEE
Q 010784 252 ATLYGHEKPIK-LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS--SCCVGM-------TSVPGVPVDMKCHESMLYI 321 (501)
Q Consensus 252 ~~~~~~~~~v~-~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~ 321 (501)
..+..-..++. .-.+.. .+..++--+.+|.|+--|+........ ...... ..-.-..+.+....+.+++
T Consensus 176 ~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred cccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 23333333332 223332 444566678999999988876653211 111100 0122234555555566665
Q ss_pred EeC-----------CcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc-EEEEE-cCCc-EEEEecCCCCCC
Q 010784 322 ASG-----------SSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS-LICTG-GIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 322 ~~~-----------~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~-~~d~-i~iwd~~~~~~~ 379 (501)
... ..|-++|+.+++.+..+.. ..++.+|..+.+.+ +|++. ..++ +.+||..+++.+
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 531 1688899999999988875 35677999998865 55444 3456 999999998754
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.007 Score=56.86 Aligned_cols=244 Identities=13% Similarity=0.144 Sum_probs=122.2
Q ss_pred CCceEEeeCCcEEEeecCCeeeEEEEeccccc------------------------------------------ccceec
Q 010784 112 PHDHILLDNNDIFSTQGSSIQNIKIDNFLSES------------------------------------------YYRATL 149 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~------------------------------------------~~~~~~ 149 (501)
.|+++.+.++..=++.|...|.|.||.+.... .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 36778888887777778777888888764321 111122
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCcee-ee--cc------CCCCceEEEEeeecC-
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQ-RC--FK------GHNGPVSTLSDKLLG- 218 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~-~~--~~------~h~~~v~~l~~s~~~- 218 (501)
....++|++++.| |=.+++.|..+|.+.|.| .|..+ .. +. .....|+++.|....
T Consensus 83 ~~~~g~vtal~~S--------------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 83 DAKQGPVTALKNS--------------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp ---S-SEEEEEE---------------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred eccCCcEeEEecC--------------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 2235778888876 457999999999999999 43322 11 11 234568889887422
Q ss_pred CCCC---CEEEEeeCCCcEEEEeccC-CCccccccceeeccCCCCceeEEEEeecC---------------------CeE
Q 010784 219 DGSG---KILASGGEDATVRLWSLSS-SGKRGQQALKATLYGHEKPIKLMSVAGHK---------------------SFL 273 (501)
Q Consensus 219 ~~~~---~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------------------~~~ 273 (501)
..|+ -.+++|...|.+.+|.+.- ...............+.++|..|.....+ ..+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 1222 4788999999999998863 22111122222223456666655533111 124
Q ss_pred EEEEeCCCeEEEEECCCCccccceecccceecCC-Cceeee--cCCC-eEEEEeCCcEEEEEcCCCceEeeeccCC----
Q 010784 274 LVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG-VPVDMK--CHES-MLYIASGSSVVTIDLRTMQKVMTPAICK---- 345 (501)
Q Consensus 274 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~---- 345 (501)
++++ .+..++++...+.+...... .......+ ...... .... ...+...+.++++.+...+.+..+....
T Consensus 229 vVvv-Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~ 306 (395)
T PF08596_consen 229 VVVV-SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS 306 (395)
T ss_dssp EEEE--SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred EEEE-cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence 4444 45779999988765433221 11010000 010000 1111 2223345699999999988887766532
Q ss_pred CcEEEEEEcCCCcEEEEEcCCcEEEE
Q 010784 346 PILHSFSIMPSKSLICTGGIGKAMTW 371 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d~i~iw 371 (501)
..+....++++|..++-.+...+.++
T Consensus 307 ~~~~~ssis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred ccccccEECCCCCEEEEeCcccEEEE
Confidence 23445677889998887775553333
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.71 E-value=0.019 Score=49.99 Aligned_cols=219 Identities=14% Similarity=0.127 Sum_probs=110.8
Q ss_pred eeccCCCCceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEeecCCeEEEEE
Q 010784 200 RCFKGHNGPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVAGHKSFLLVTI 277 (501)
Q Consensus 200 ~~~~~h~~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~ 277 (501)
+.+.+-...++.++|. ++ +.++++....+.|...+.+ ++ .+..+.-. .+..-.|++.. ++.++++.
T Consensus 15 ~~l~g~~~e~SGLTy~----pd~~tLfaV~d~~~~i~els~~-G~------vlr~i~l~g~~D~EgI~y~g-~~~~vl~~ 82 (248)
T PF06977_consen 15 KPLPGILDELSGLTYN----PDTGTLFAVQDEPGEIYELSLD-GK------VLRRIPLDGFGDYEGITYLG-NGRYVLSE 82 (248)
T ss_dssp EE-TT--S-EEEEEEE----TTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-S-TTEEEEEE
T ss_pred eECCCccCCccccEEc----CCCCeEEEEECCCCEEEEEcCC-CC------EEEEEeCCCCCCceeEEEEC-CCEEEEEE
Confidence 3455666679999997 54 5567777778888777764 33 34443222 34567888873 66666655
Q ss_pred eCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCC
Q 010784 278 SKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSK 357 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~ 357 (501)
-.++.+.++++............ .-+.+ .....++..+..++|++.+
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~---------------------------~~~~l------~~~~~~N~G~EGla~D~~~ 129 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADV---------------------------QKISL------GFPNKGNKGFEGLAYDPKT 129 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEE---------------------------EEEE---------S---SS--EEEEEETTT
T ss_pred cCCCcEEEEEEeccccccchhhc---------------------------eEEec------ccccCCCcceEEEEEcCCC
Confidence 56899999988543211100000 00000 0011245668999999987
Q ss_pred cEEEEEcCCc-EEEEecCC--C-CCCCC--CCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784 358 SLICTGGIGK-AMTWDIRR--S-QDAVK--PQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 358 ~~l~~~~~d~-i~iwd~~~--~-~~~~~--~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
+.|+.+-+.. ..+|.+.. . ..... ...+.........+.+++++|. .+++-+.....|..+| .+|+.+..+
T Consensus 130 ~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 130 NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred CEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 7777777666 77777664 1 11000 0000111122345788999998 6777767899999999 667776655
Q ss_pred ccCCCC----CCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 430 LCNYPE----EADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 430 ~~~~~~----~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
...... ..-..--+++|.++|++.+++ +.+.++++
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs---EpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS---EPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT--EEEEE---TTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCCCEEEEc---CCceEEEe
Confidence 432210 011235689999999777765 55665554
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.69 E-value=0.022 Score=53.43 Aligned_cols=294 Identities=11% Similarity=0.043 Sum_probs=140.5
Q ss_pred eCCcEEEeecC---------CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 119 DNNDIFSTQGS---------SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 119 ~~~~~~~~~g~---------~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
|||+++++... ..+.+.|+|+.++ +. ..+......+....|+| +|+.++... ++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~-~~-~~l~~~~~~~~~~~~sP-------------~g~~~~~v~-~~n 64 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG-EI-TPLTPPPPKLQDAKWSP-------------DGKYIAFVR-DNN 64 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT-EE-EESS-EETTBSEEEE-S-------------SSTEEEEEE-TTE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC-ce-EECcCCccccccceeec-------------CCCeeEEEe-cCc
Confidence 45555555532 2578889999974 33 33333367789999999 788888876 678
Q ss_pred eEEec-CCceeeecc--CC----------------CCceEEEEeeecCCCCCCEEEEeeC-CCcEEEEeccCCCcccccc
Q 010784 190 IRLWW-KGSCQRCFK--GH----------------NGPVSTLSDKLLGDGSGKILASGGE-DATVRLWSLSSSGKRGQQA 249 (501)
Q Consensus 190 i~vwd-~~~~~~~~~--~h----------------~~~v~~l~~s~~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~ 249 (501)
|.+++ .......+. +- -+.-..+-|| |++++|+.... +..|+.+.+......
T Consensus 65 ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS----pd~~~la~~~~d~~~v~~~~~~~~~~~---- 136 (353)
T PF00930_consen 65 LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS----PDSKYLAFLRFDEREVPEYPLPDYSPP---- 136 (353)
T ss_dssp EEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-----TTSSEEEEEEEE-TTS-EEEEEEESSS----
T ss_pred eEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEEC----CCCCEEEEEEECCcCCceEEeeccCCc----
Confidence 88887 222222221 10 1122457786 78888776543 344444443221110
Q ss_pred ceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeE--EEEe-CC-
Q 010784 250 LKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESML--YIAS-GS- 325 (501)
Q Consensus 250 ~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~- 325 (501)
.. ..-.+..+.+- .-|.--. .-.+.++|+.+++...................+.+.++.. ++.. ..
T Consensus 137 -~~----~yp~~~~~~YP-k~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 137 -DS----QYPEVESIRYP-KAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp -TE----SS-EEEEEE---BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred -cc----cCCcccccccC-CCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 00 01123334432 1111111 1236678887775431110100011223334455544433 2222 11
Q ss_pred ----cEEEEEcCCCceEeeecc-CCCcE---EEEEEc-CCCc-EEEEEcCCc---EEEEecCCCCCCCCCCCcccccCcc
Q 010784 326 ----SVVTIDLRTMQKVMTPAI-CKPIL---HSFSIM-PSKS-LICTGGIGK---AMTWDIRRSQDAVKPQPMAELDGHV 392 (501)
Q Consensus 326 ----~i~~~d~~~~~~~~~~~~-~~~~v---~~v~~~-~~~~-~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~h~ 392 (501)
.+.++|..++........ ..+.| ....+. +++. ++.....++ |.+++...+.. ..+....
T Consensus 207 q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-------~~lT~G~ 279 (353)
T PF00930_consen 207 QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-------RQLTSGD 279 (353)
T ss_dssp STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-------EESS-SS
T ss_pred CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-------eccccCc
Confidence 577778877655433322 22222 244444 5544 444444555 66667666531 3333334
Q ss_pred cCeEE-EEecCC--eEEEEecCCC----cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 393 GSVTQ-LHMDPY--KIVTGGRDDL----RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 393 ~~v~~-l~~~~~--~~l~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
-.|+. +.+++. .++.++..++ .|..-++.++..+..+..... .-..+.|||+|++++...+
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-----~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-----DHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-----TTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-----CceEEEECCCCCEEEEEEc
Confidence 45644 567776 5555554422 455555552344455533221 1168999999999887653
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.69 E-value=0.005 Score=56.90 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=105.0
Q ss_pred cEEEEeccCCCccccccceeecc-CCCCceeEEEEeec------CCeEEEEEeC----------CCeEEEEECCCC-ccc
Q 010784 233 TVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGH------KSFLLVTISK----------DSKVRVWDTSTS-SAV 294 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~------~~~~l~s~s~----------dg~v~vwd~~~~-~~~ 294 (501)
.|++.|..+... +..+. .....+.+++...- ...+++.|+. .|.|.++++... ...
T Consensus 3 ~i~l~d~~~~~~------~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 3 SIRLVDPTTFEV------LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp EEEEEETTTSSE------EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred EEEEEeCCCCeE------EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 567777766542 22221 12333444443321 1567777753 289999999884 222
Q ss_pred cceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc-eEeeec-cCCCcEEEEEEcCCCcEEEEEcC-CcEEEE
Q 010784 295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ-KVMTPA-ICKPILHSFSIMPSKSLICTGGI-GKAMTW 371 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~-d~i~iw 371 (501)
............+.+.++....+.++++.+..+.+|++...+ ....-. .....+.++... +++++.|.. +++.++
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred eEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 233555555778999999888888888999999999998887 332222 123466666654 558888874 447766
Q ss_pred ecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 372 DIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 372 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
........ ...+.. ......++++.+-++ ..++++..+|.+.++...
T Consensus 155 ~~~~~~~~--l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNK--LILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE---EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCE--EEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 44431110 011111 122446888888755 566667899999999876
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.0095 Score=60.19 Aligned_cols=136 Identities=12% Similarity=0.067 Sum_probs=91.2
Q ss_pred CcEEEEEcCCCceEeeeccCCCc-EEEEEEcC------CCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784 325 SSVVTIDLRTMQKVMTPAICKPI-LHSFSIMP------SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQ 397 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~~~~-v~~v~~~~------~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 397 (501)
..++-.|++.|+.+..+..+... |..++-.. ....++.-+.+.+..||.|-.....-....+.+ ......+|
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~ 582 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSC 582 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceE
Confidence 47999999999999999887654 55554321 223444444455999999975311000011111 22456778
Q ss_pred EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 398 LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 398 l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
++-+.+..||.||.+|.||+||- .|+.-.+.. .+-+.+|..+..+.||++|++.+. ..+.+.+.
T Consensus 583 ~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~l----p~lG~pI~~iDvt~DGkwilaTc~---tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDGYIAVGSNKGDIRLYDR-LGKRAKTAL----PGLGDPIIGIDVTADGKWILATCK---TYLLLIDT 646 (794)
T ss_pred EEecCCceEEEEeCCCcEEeecc-cchhhhhcC----CCCCCCeeEEEecCCCcEEEEeec---ceEEEEEE
Confidence 88888877777889999999994 444444432 344789999999999999998863 56777764
No 357
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.003 Score=62.06 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=78.2
Q ss_pred cCcEEEEee----CCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784 177 TENVLVTSS----CDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 177 ~~~~l~s~~----~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 251 (501)
...+|+.++ ..|.|.||- +|.+.+... -.-.+++++|+ |..-.|+.|-.-|.+.+|...+.+. -
T Consensus 26 sePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWH----pe~~vLa~gwe~g~~~v~~~~~~e~------h 94 (1416)
T KOG3617|consen 26 SEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWH----PEEFVLAQGWEMGVSDVQKTNTTET------H 94 (1416)
T ss_pred CCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccC----hHHHHHhhccccceeEEEecCCcee------e
Confidence 566777665 358899994 766543322 11234569998 7778899999999999999888663 4
Q ss_pred eeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784 252 ATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS 289 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~ 289 (501)
.....|..+|..+.|++ +|+.++++..-|.|.+|...
T Consensus 95 tv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 55567999999999997 88899999999999999876
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.54 E-value=0.0078 Score=60.79 Aligned_cols=210 Identities=10% Similarity=0.074 Sum_probs=118.2
Q ss_pred CCCceEEee--CCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe-eCC
Q 010784 111 KPHDHILLD--NNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS-SCD 187 (501)
Q Consensus 111 ~~i~~~~~~--~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d 187 (501)
....+|++. .|..|++=|+..|..+-.+-. +.+....+..-. ....-.|.|. -.+-...+.++|+.. ...
T Consensus 431 ~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~-~l~f~t~i~~i~-~~~g~~~~P~-----k~mL~~~d~~mil~~~~~~ 503 (794)
T PF08553_consen 431 EKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDD-GLEFSTAISNIS-TPKGKNFTPK-----KAMLHDQDRNMILLDPNNP 503 (794)
T ss_pred CccceeEeeeccCceEEECCCcEeEEECCCCC-ceeeeEEecccc-cCCCcccCcc-----hhhhhccccceEeecCCCC
Confidence 347778877 578888888776655544211 111111111000 0000112221 000011144444443 344
Q ss_pred CceEEec--CCceeeeccCCCCc-eEEEEeee-cCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeE
Q 010784 188 HSIRLWW--KGSCQRCFKGHNGP-VSTLSDKL-LGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKL 263 (501)
Q Consensus 188 g~i~vwd--~~~~~~~~~~h~~~-v~~l~~s~-~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 263 (501)
..|+-.| .|+.+.....|... |..++=.- ...-+....+.|-.+..+..||.+-............+ .......|
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~ 582 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSC 582 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceE
Confidence 6666667 88888888877654 66665110 00012345667778889999999865420000001111 23445667
Q ss_pred EEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc
Q 010784 264 MSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 264 l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 343 (501)
++-. ...+||.|+.+|.||+||- .++. ....+.+
T Consensus 583 ~aTt--~~G~iavgs~~G~IRLyd~-~g~~-------------------------------------------AKT~lp~ 616 (794)
T PF08553_consen 583 FATT--EDGYIAVGSNKGDIRLYDR-LGKR-------------------------------------------AKTALPG 616 (794)
T ss_pred EEec--CCceEEEEeCCCcEEeecc-cchh-------------------------------------------hhhcCCC
Confidence 7765 4558999999999999993 2211 1123445
Q ss_pred CCCcEEEEEEcCCCcEEEEEcCCcEEEEecC
Q 010784 344 CKPILHSFSIMPSKSLICTGGIGKAMTWDIR 374 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~ 374 (501)
-..+|..|..+.||+++++.+...+.+++..
T Consensus 617 lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 5789999999999999999998887777753
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.45 E-value=0.081 Score=47.67 Aligned_cols=234 Identities=10% Similarity=0.008 Sum_probs=120.6
Q ss_pred eeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecCC-
Q 010784 118 LDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWKG- 196 (501)
Q Consensus 118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~~- 196 (501)
....+..++.|..+| +.+++........... +...|..+...+ +-+.|+.-+ |+.+.+++..
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~-------------~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLP-------------ELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEec-------------ccCEEEEEc-CCccEEEEchh
Confidence 344577888888888 7888873322333333 233399999988 455555544 5999999711
Q ss_pred -ceee---e-----------ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 197 -SCQR---C-----------FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 197 -~~~~---~-----------~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
.... . .......+...+- .....+...+.......|.+|.......... .....+. -...+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~-lp~~~ 141 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAV--NGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEIS-LPDPP 141 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEee--ccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEE-cCCCc
Confidence 1111 0 1112233444330 0112333334444556999998876422100 1233333 34677
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc------eecCCCceeeecCCCeEEEEeCCcEEEEEcCCC
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM------TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTM 335 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 335 (501)
..+.|.. +.++.|..+ ...+.|+.++........... ......+..+-.-++..++.+.+.+.++=-..|
T Consensus 142 ~~i~~~~---~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G 217 (275)
T PF00780_consen 142 SSIAFLG---NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNG 217 (275)
T ss_pred EEEEEeC---CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCC
Confidence 8888873 356666654 478889987654322111000 011222333322232233333333444433344
Q ss_pred ceEe--eeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCC
Q 010784 336 QKVM--TPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDA 379 (501)
Q Consensus 336 ~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~ 379 (501)
+..+ .+. -...+.++++. ..++++.+++.|.||++.+++.+
T Consensus 218 ~~~r~~~i~-W~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 218 EPSRKSTIQ-WSSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELV 260 (275)
T ss_pred CcCcccEEE-cCCchhEEEEE--CCEEEEECCCEEEEEECcCCcEE
Confidence 3332 111 23445566663 34777777777999999997543
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.44 E-value=0.00024 Score=41.38 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=33.1
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd 194 (501)
+....+..|...|.++.|.+ ++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-------------DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-------------CCCEEEEecCCCeEEEcC
Confidence 44566778999999999998 678999999999999996
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.42 E-value=0.15 Score=50.32 Aligned_cols=187 Identities=13% Similarity=0.046 Sum_probs=104.8
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCC-CceE----------EEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCc
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHN-GPVS----------TLSDKLLGDGSGKILASGGEDATVRLWSLSSSGK 244 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~-~~v~----------~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 244 (501)
+..++.++.++.|.-.| +|+.+-.+.... ..+. .+++ .+..++.++.|+.+...|..+++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av------~~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL------YDGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE------ECCEEEEEcCCCEEEEEECCCCCE
Confidence 35666666677777777 666654433110 1111 1222 234677788899999999999875
Q ss_pred cccccceeecc--CCC--CceeE-EEEeecCCeEEEEEe------CCCeEEEEECCCCccccceeccccee---------
Q 010784 245 RGQQALKATLY--GHE--KPIKL-MSVAGHKSFLLVTIS------KDSKVRVWDTSTSSAVRSSCCVGMTS--------- 304 (501)
Q Consensus 245 ~~~~~~~~~~~--~~~--~~v~~-l~~~~~~~~~l~s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~--------- 304 (501)
+-... .+. ..+++ -.+. ++. ++.+. .+|.|..+|.++++.+-.........
T Consensus 143 ------~W~~~~~~~~~~~~~tssP~v~--~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 143 ------VWSKKNGDYKAGYTITAAPLVV--KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred ------EeecccccccccccccCCcEEE--CCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence 22221 111 11211 1111 343 44443 36899999999998765433321100
Q ss_pred ----------------c-CCC---ceeeecCCCeEEEEeCC-----------------cEEEEEcCCCceEeeeccCCCc
Q 010784 305 ----------------V-PGV---PVDMKCHESMLYIASGS-----------------SVVTIDLRTMQKVMTPAICKPI 347 (501)
Q Consensus 305 ----------------~-~~~---~~~~~~~~~~~~~~~~~-----------------~i~~~d~~~~~~~~~~~~~~~~ 347 (501)
. .+. ...++...+.+++.++. .+.-.|+++++....++.....
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D 293 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHD 293 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCC
Confidence 0 001 11233334566666632 5777899999998777652221
Q ss_pred ---------EEEEEEcCCCc---EEEEEcCCc-EEEEecCCCCCC
Q 010784 348 ---------LHSFSIMPSKS---LICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 348 ---------v~~v~~~~~~~---~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
..-+.+..+|+ .++.+..++ +++.|.++++.+
T Consensus 294 ~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 294 EWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 11122324665 777888888 999999998764
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.014 Score=54.62 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=90.8
Q ss_pred cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCc--------EEEEEcCCcEEEEecCCCCCCCCCCCcccccCc----cc
Q 010784 326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKS--------LICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH----VG 393 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h----~~ 393 (501)
.++-.|++.|+.+..+..+.. |+-+.+.|+.+ .|+.-++.+|.-||.|-... ..+...++| ..
T Consensus 357 ~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----~kl~~~q~kqy~~k~ 431 (644)
T KOG2395|consen 357 KLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----NKLAVVQSKQYSTKN 431 (644)
T ss_pred cceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc----ceeeeeecccccccc
Confidence 788899999999998887766 77777777632 33433444499999985332 112223333 23
Q ss_pred CeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 394 SVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 394 ~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
...|.+-..+.+++.||.+|.|++||- .+....+.. .+-..+|..+..+.||++|+..+. ..+.+-+.
T Consensus 432 nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl----PgLG~~I~hVdvtadGKwil~Tc~---tyLlLi~t 499 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL----PGLGDAIKHVDVTADGKWILATCK---TYLLLIDT 499 (644)
T ss_pred ccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc----cccCCceeeEEeeccCcEEEEecc---cEEEEEEE
Confidence 456666666777777889999999997 565555543 455789999999999999988762 45655553
No 363
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00043 Score=58.23 Aligned_cols=58 Identities=19% Similarity=0.438 Sum_probs=51.3
Q ss_pred CCCCCCcccccccHHHHHHHHhcC-ChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcC
Q 010784 12 SPSPSTTAIADLNEDAVAHCALNL-SLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWP 69 (501)
Q Consensus 12 ~~~~~~~~~~~Lp~e~~~~i~~~L-~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~ 69 (501)
+|.|....|.+||.|++..|+.-| |.+||..++++--.++.+++++.+||.+|+=.|.
T Consensus 194 ~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~ 252 (332)
T KOG3926|consen 194 EPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN 252 (332)
T ss_pred CCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455567789999999999999766 8999999999999999999999999999987764
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0012 Score=62.71 Aligned_cols=91 Identities=9% Similarity=0.127 Sum_probs=74.9
Q ss_pred ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee-eeEeeccccEEEEeecCCCceEEEeec
Q 010784 392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG-CSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
...+..+.|+|. .++|.+..+|.|-+..+. .+.+.++.. ++..++ +++|.|||+.||+|- .||+|++-|+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-----p~~~v~~sL~W~~DGkllaVg~--kdG~I~L~Dv 91 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-----PGENVTASLCWRPDGKLLAVGF--KDGTIRLHDV 91 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-----CCCccceeeeecCCCCEEEEEe--cCCeEEEEEc
Confidence 346788999999 999999999999999887 777888842 334455 999999999999998 6699999999
Q ss_pred cCCccce---eecCCCCceeeecc
Q 010784 470 SNATCPV---LKHEVQNDSKFWGP 490 (501)
Q Consensus 470 ~~~~~~~---~s~~~d~~~~~w~~ 490 (501)
..+.... .+-..|-+..+|.+
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCCceeccccccccchheeeccc
Confidence 9988643 36778888899963
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.28 E-value=0.065 Score=51.24 Aligned_cols=227 Identities=11% Similarity=0.064 Sum_probs=109.3
Q ss_pred EEEecCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEe
Q 010784 105 CFYSVAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTS 184 (501)
Q Consensus 105 ~~~~~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 184 (501)
........+..+.++|+|++++. ..+|...|+..... +. ...+.-....|.+ + +.+|+-
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~-r~-----k~~G~g~~~vw~~-------------~-n~yAv~ 85 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW-RN-----KAFGSGLSFVWSS-------------R-NRYAVL 85 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT-EE-----EEEEE-SEEEE-T-------------S-SEEEEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC-cc-----cccCceeEEEEec-------------C-ccEEEE
Confidence 34445556899999999999998 45677777773321 11 1134556678886 3 446666
Q ss_pred eCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCcee
Q 010784 185 SCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIK 262 (501)
Q Consensus 185 ~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 262 (501)
...++|.|+. .......++. ...+..+- . |.+|...+.+ .|.+||..++. .+..+... +|.
T Consensus 86 ~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If------~-G~LL~~~~~~-~i~~yDw~~~~------~i~~i~v~--~vk 148 (443)
T PF04053_consen 86 ESSSTIKIYKNFKNEVVKSIKL-PFSVEKIF------G-GNLLGVKSSD-FICFYDWETGK------LIRRIDVS--AVK 148 (443)
T ss_dssp -TTS-EEEEETTEE-TT------SS-EEEEE--------SSSEEEEETT-EEEEE-TTT--------EEEEESS---E-E
T ss_pred ECCCeEEEEEcCccccceEEcC-CcccceEE------c-CcEEEEECCC-CEEEEEhhHcc------eeeEEecC--CCc
Confidence 6688999974 2222223332 12344443 2 7777776654 89999999886 46666533 388
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCcccc-----ceecccce-ecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR-----SSCCVGMT-SVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 336 (501)
.+.|++ ++.+++..+.+ .+.+++........ ........ .....+.+..|.++..+.++...++- +-.|+
T Consensus 149 ~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~~lkY--l~~Ge 224 (443)
T PF04053_consen 149 YVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSNHLKY--LVNGE 224 (443)
T ss_dssp EEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TTEEEE--EETTE
T ss_pred EEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCCeEEE--EEcCC
Confidence 999996 67777777754 67777654330000 00011111 22555666667777444444444443 33332
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR 374 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~ 374 (501)
.. .+..-..+++=+.+.+..+.+.....+. +..+.+.
T Consensus 225 ~~-~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 225 TG-IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EE-EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred cc-eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 21 1111134455555566555666665554 6666554
No 366
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.28 E-value=0.15 Score=46.96 Aligned_cols=278 Identities=11% Similarity=0.044 Sum_probs=115.7
Q ss_pred EeeCCcEEEe-ecCCeeeEEEE--ecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 117 LLDNNDIFST-QGSSIQNIKID--NFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 117 ~~~~~~~~~~-~g~~d~~i~vw--~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
+|.++|..++ .+..++...+| |+.+ ..+..|..+. +......+++ +.+.++-......|+-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~g~~~~g~~~s~-------------~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGPGDNTFGGFLSP-------------DDRALYYVKNGRSLRR 106 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-T-------------TSSEEEEEETTTEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCCCCCccceEEec-------------CCCeEEEEECCCeEEE
Confidence 5677885555 44446555555 5554 4444555443 2233455556 5566654444456666
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC----------------------CCcEEEEeccCCCccccc
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE----------------------DATVRLWSLSSSGKRGQQ 248 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~----------------------dg~i~iwd~~~~~~~~~~ 248 (501)
-| +.+....+.....-+-...|.. +.++..++-.-. ...|..-|+.+++
T Consensus 107 vdL~T~e~~~vy~~p~~~~g~gt~v~--n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----- 179 (386)
T PF14583_consen 107 VDLDTLEERVVYEVPDDWKGYGTWVA--NSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----- 179 (386)
T ss_dssp EETTT--EEEEEE--TTEEEEEEEEE---TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------
T ss_pred EECCcCcEEEEEECCcccccccceee--CCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-----
Confidence 66 4333333444444444445532 244555432210 1223344555443
Q ss_pred cceeeccCCCCceeEEEEeecCCeEEEEEeC---CCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC
Q 010784 249 ALKATLYGHEKPIKLMSVAGHKSFLLVTISK---DSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG 324 (501)
Q Consensus 249 ~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~---dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (501)
...+..-+..+..+.++|.++..|+-|-+ +.. -++|-+++...
T Consensus 180 --~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~------------------------------- 226 (386)
T PF14583_consen 180 --RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS------------------------------- 226 (386)
T ss_dssp --EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------------------------
T ss_pred --eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-------------------------------
Confidence 23333344556677888877777777643 221 24444432210
Q ss_pred CcEEEEEcCCCceEeeeccC--CCcEEEEEEcCCCcEEEEEc-----CCc-EEEEecCCCCCCCCCCCcccccCcccCeE
Q 010784 325 SSVVTIDLRTMQKVMTPAIC--KPILHSFSIMPSKSLICTGG-----IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVT 396 (501)
Q Consensus 325 ~~i~~~d~~~~~~~~~~~~~--~~~v~~v~~~~~~~~l~~~~-----~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~ 396 (501)
....+..+ ...+..=-|.|||..|.--+ .+. |.-+|..+++.. .+ .......
T Consensus 227 ------------~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-------~~-~~~p~~~ 286 (386)
T PF14583_consen 227 ------------NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-------RL-MEMPWCS 286 (386)
T ss_dssp --------------EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-------EE-EEE-SEE
T ss_pred ------------cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-------EE-EeCCcee
Confidence 00111111 12234445777876554322 244 666777775421 11 1122344
Q ss_pred EEEecCC-eEEEEecCCC----------------cEEEEeCCCcccccccccCC-----CCCCCc-ceeeeEeeccccEE
Q 010784 397 QLHMDPY-KIVTGGRDDL----------------RINIWETDTGMLANSLLCNY-----PEEADI-STGCSAMAVSGCRI 453 (501)
Q Consensus 397 ~l~~~~~-~~l~~gs~dg----------------~i~iwd~~~~~~~~~~~~~~-----~~~~~~-~v~~~~~s~~g~~l 453 (501)
.+..+++ .++++=+.|. -|+++++..++... +..|. ..++.. .=.-..|+|||+++
T Consensus 287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~V 365 (386)
T PF14583_consen 287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWV 365 (386)
T ss_dssp EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEE
T ss_pred eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEE
Confidence 5556777 7777644442 45677877654321 11110 011111 11356899999998
Q ss_pred EEeecCCCceEEEeeccC
Q 010784 454 VTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 454 ~s~~~d~~g~i~~w~~~~ 471 (501)
+-.|. ..|...||-+.-
T Consensus 366 lF~Sd-~~G~~~vY~v~i 382 (386)
T PF14583_consen 366 LFRSD-MEGPPAVYLVEI 382 (386)
T ss_dssp EEEE--TTSS-EEEEEE-
T ss_pred EEECC-CCCCccEEEEeC
Confidence 88763 567777765543
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.27 E-value=0.00068 Score=39.33 Aligned_cols=38 Identities=39% Similarity=0.781 Sum_probs=32.7
Q ss_pred ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEe
Q 010784 197 SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWS 238 (501)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd 238 (501)
..+..+..|...|.++.|. +.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFS----PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEEC----CCCCEEEEecCCCeEEEcC
Confidence 4566677899999999996 6778999999999999996
No 368
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.25 E-value=0.24 Score=48.95 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=23.1
Q ss_pred eEEEEecCCCcEEEEeCCCccccccccc
Q 010784 404 KIVTGGRDDLRINIWETDTGMLANSLLC 431 (501)
Q Consensus 404 ~~l~~gs~dg~i~iwd~~~~~~~~~~~~ 431 (501)
.++..++.||.++.+|.++|+.+-.+..
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 3555567899999999999999988854
No 369
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.044 Score=52.18 Aligned_cols=181 Identities=17% Similarity=0.056 Sum_probs=101.7
Q ss_pred CCceeEEEEeecCCeEEEEE--eCC-CeEEEEECCCCccccceecccceecCCCceeeecCCCe--EEEEeCC----cEE
Q 010784 258 EKPIKLMSVAGHKSFLLVTI--SKD-SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASGS----SVV 328 (501)
Q Consensus 258 ~~~v~~l~~~~~~~~~l~s~--s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~i~ 328 (501)
...+..-+|+|....+.... ... ..+.++|+.+++..... ...+......+++++ ++++... .|.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 34444556665332222221 122 45899999988653322 234444455555543 4444322 799
Q ss_pred EEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC--Cc--EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-
Q 010784 329 TIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI--GK--AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY- 403 (501)
Q Consensus 329 ~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--d~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 403 (501)
++|+...+... +....+.-..-.|+|||+.++-.++ +. |.+++....... ..+..+ +.-..-.|+|+
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-----riT~~~--~~~~~p~~SpdG 337 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-----RLTFSG--GGNSNPVWSPDG 337 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-----EeeccC--CCCcCccCCCCC
Confidence 99998887444 3333333346789999998887773 33 777777765421 122222 22225678999
Q ss_pred e-EEEEecCCCc--EEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeec
Q 010784 404 K-IVTGGRDDLR--INIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 404 ~-~l~~gs~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
+ ++..+..+|. |.+.|+.++..++.+. .......-.|.++|+.+...+.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt------~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGKIRILT------STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCcEEEcc------ccccCCCCCcCCCCceEEEecc
Confidence 4 4444433455 6777776665444442 1233445678889988877663
No 370
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.22 E-value=0.092 Score=52.33 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=79.6
Q ss_pred eCCcEEEeecCCe------eeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC-C--
Q 010784 119 DNNDIFSTQGSSI------QNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD-H-- 188 (501)
Q Consensus 119 ~~~~~~~~~g~~d------~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g-- 188 (501)
+..+.+++.|+.. ..+..+|..++ ......+. +...-.+++.. ++...++|+.| |
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--------------~~~lYv~GG~~~~~~ 346 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--------------NGKLYVVGGYDSGSD 346 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--------------CCEEEEEccccCCCc
Confidence 5556777778776 46778888764 12222222 23334455554 47899999999 3
Q ss_pred ---ceEEec--CCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCc-----EEEEeccCCCccccccceeeccC
Q 010784 189 ---SIRLWW--KGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDAT-----VRLWSLSSSGKRGQQALKATLYG 256 (501)
Q Consensus 189 ---~i~vwd--~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~ 256 (501)
++..|| ..+ .+........... ++. -+|.+.++|+.||. |-.||..+.+- ..+....
T Consensus 347 ~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~-----l~g~iYavGG~dg~~~l~svE~YDp~~~~W----~~va~m~- 415 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWTPVAPMNTKRSDFG-VAV-----LDGKLYAVGGFDGEKSLNSVECYDPVTNKW----TPVAPML- 415 (571)
T ss_pred ccceEEEecCCCCceeccCCccCccccce-eEE-----ECCEEEEEeccccccccccEEEecCCCCcc----cccCCCC-
Confidence 355666 222 1112222222222 222 36788999998874 67788777542 2222222
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCe------EEEEECCCCc
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSK------VRVWDTSTSS 292 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~------v~vwd~~~~~ 292 (501)
..........-++.+.++|+.++. +..||..+.+
T Consensus 416 --~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 416 --TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred --cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 223333333337788888886653 4555555543
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.13 Score=48.99 Aligned_cols=193 Identities=11% Similarity=0.031 Sum_probs=101.8
Q ss_pred cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccce----ecCCC
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMT----SVPGV 308 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~----~~~~~ 308 (501)
.|++|+..... +..+.-..+.|.++.|.. ...|+....||.++++|+.... .+...... ...+.
T Consensus 62 ~I~iys~sG~l-------l~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~ 129 (410)
T PF04841_consen 62 SIQIYSSSGKL-------LSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECR 129 (410)
T ss_pred EEEEECCCCCE-------eEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce---eechhhhccccCccccc
Confidence 37777665432 333332237888999974 4567777899999999987443 11111111 11222
Q ss_pred ceeeecCCCeEEEEeCC-cEEEEEcCCCc-eEeee---cc-------CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCC
Q 010784 309 PVDMKCHESMLYIASGS-SVVTIDLRTMQ-KVMTP---AI-------CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-~i~~~d~~~~~-~~~~~---~~-------~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~ 375 (501)
+....+..+++++.++. .+.+..-.... ....+ .. +........++.+....+....+. +.+.+-..
T Consensus 130 i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 130 IFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 33334444555555443 44443222211 11111 11 000000123444555555555555 66444333
Q ss_pred CCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecccc
Q 010784 376 SQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGC 451 (501)
Q Consensus 376 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 451 (501)
.+ .+. ..+++..+++||+ +++|.-..+|.+.+....-.+.+..+... .......+.|+-+..
T Consensus 210 ~~---------~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~----~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 210 FK---------QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD----SKSPPKQMAWCGNDA 272 (410)
T ss_pred cc---------ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC----cCCCCcEEEEECCCc
Confidence 21 122 2468999999999 88888888999999887656666555432 233455666665543
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0022 Score=60.93 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=74.7
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceE-EEEeeecCCCCCCEEEEeeC
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVS-TLSDKLLGDGSGKILASGGE 230 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~-~l~~s~~~~~~~~~l~sg~~ 230 (501)
...|.-+.|+| .-.++|.+..+|.|.+.. .-+.+-++..|..+++ +++|. ++|+.|+.|-.
T Consensus 20 ~~~i~~~ewnP-------------~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~----~DGkllaVg~k 82 (665)
T KOG4640|consen 20 PINIKRIEWNP-------------KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWR----PDGKLLAVGFK 82 (665)
T ss_pred ccceEEEEEcC-------------ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeec----CCCCEEEEEec
Confidence 34577888988 789999999999998886 6667778877888888 99995 89999999999
Q ss_pred CCcEEEEeccCCCccccccceeeccCCCCceeEEEEe
Q 010784 231 DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVA 267 (501)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 267 (501)
||+|++.|..++.. +......-...|.++-|.
T Consensus 83 dG~I~L~Dve~~~~-----l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 83 DGTIRLHDVEKGGR-----LVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCeEEEEEccCCCc-----eeccccccccchheeecc
Confidence 99999999999874 333334455667777775
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0052 Score=62.19 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=80.4
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
+..+..--.+.+++.|+..|.+-..|+...-.....-..-.++|++++|+. +|.+++.|-.+|.|.+
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-------------dg~~l~~G~~~G~V~v 156 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-------------DGSLLLAGLGDGHVTV 156 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-------------CCceeccccCCCcEEE
Confidence 333333445677888888888888887753222233334567899999998 8999999999999999
Q ss_pred ec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc
Q 010784 193 WW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS 240 (501)
Q Consensus 193 wd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~ 240 (501)
|| .++.++.+..|..+.+.+-++-. ...+..++++...|. +|.+.
T Consensus 157 ~D~~~~k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 157 WDMHRAKILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEccCCcceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEEEE
Confidence 99 66788888888887777665422 245557888877776 56543
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.017 Score=58.78 Aligned_cols=101 Identities=18% Similarity=0.308 Sum_probs=73.0
Q ss_pred cCcEEEEeeCCCceEEec-CCcee--eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 177 TENVLVTSSCDHSIRLWW-KGSCQ--RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~~~~--~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
.+..++.|+..|.+-..| ++..- ..=..-.++|++++|+ .+|..++.|-.+|.|.+||...++ ..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn----~dg~~l~~G~~~G~V~v~D~~~~k------~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN----QDGSLLLAGLGDGHVTVWDMHRAK------ILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec----CCCceeccccCCCcEEEEEccCCc------ceee
Confidence 356788899899999888 54322 2222356899999996 899999999999999999999876 4677
Q ss_pred ccCCCCceeEEEEee--cCCeEEEEEeCCCeEEEEECC
Q 010784 254 LYGHEKPIKLMSVAG--HKSFLLVTISKDSKVRVWDTS 289 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~--~~~~~l~s~s~dg~v~vwd~~ 289 (501)
+..|..+.+++-+.- .++..++++...|. +|.+.
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 776776666554432 13446777777775 56543
No 375
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.03 E-value=0.00029 Score=63.68 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhh
Q 010784 21 ADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQ 67 (501)
Q Consensus 21 ~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~ 67 (501)
..||+|+++++|+|||-..|+++|++|+.|+.++.|-.-|+++-.-.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t 119 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFT 119 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhc
Confidence 34999999999999999999999999999999999999998754443
No 376
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.01 E-value=0.25 Score=49.32 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=120.9
Q ss_pred CCCEEEEeeCCC------cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEEC
Q 010784 221 SGKILASGGEDA------TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDT 288 (501)
Q Consensus 221 ~~~~l~sg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~ 288 (501)
.+.+++.|+.++ .+..+|..++.- .....+. ....-.++++. ++.+.++|+.| ..+..||.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w----~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEW----SSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcE----eecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecC
Confidence 456777777763 577888877632 2222233 22223445555 56889999988 35778888
Q ss_pred CCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCceEeeeccC--CCcEEEEEEcCCCcE
Q 010784 289 STSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQKVMTPAIC--KPILHSFSIMPSKSL 359 (501)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~~~~~~~~--~~~v~~v~~~~~~~~ 359 (501)
++.+... .........-..+......+++..|. ++..||.++.+-...-... ....-.+. -+|.+
T Consensus 357 ~~~~W~~----~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~i 430 (571)
T KOG4441|consen 357 RTNQWTP----VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKL 430 (571)
T ss_pred CCCceec----cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEE
Confidence 8876422 22222333334444455556655543 5888888776543222111 11122222 27888
Q ss_pred EEEEcCC------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCCc-----EEEEeCCCccccc
Q 010784 360 ICTGGIG------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDLR-----INIWETDTGMLAN 427 (501)
Q Consensus 360 l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg~-----i~iwd~~~~~~~~ 427 (501)
.++|+.+ . +..||..+.+- ..+..+..-.. -..++.-.+.+++.|+.|+. |..||..+.+-..
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~-~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRS-GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCce----eecCCcccccc-cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 8888732 2 77888887652 22223222111 12255556677777777763 7788887755433
Q ss_pred ccccCCCCCCCcceeeeEeeccccEEEEeecCC---CceEEEeeccC
Q 010784 428 SLLCNYPEEADISTGCSAMAVSGCRIVTASYGE---PGLLQFRDFSN 471 (501)
Q Consensus 428 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~---~g~i~~w~~~~ 471 (501)
.-.. ......+.. ..-+++..++|+.|. -++|..||-..
T Consensus 506 v~~m---~~~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 506 VAPM---TSPRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cccC---ccccccccE--EEECCEEEEEecccCccccceeEEcCCCC
Confidence 2110 111122222 222666777777551 23455665443
No 377
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.0032 Score=52.21 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=68.1
Q ss_pred CcEEEEeeCCCceEEec---CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 178 ENVLVTSSCDHSIRLWW---KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd---~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
+..++.|+.+|.|.+|+ .+.....+..-...|.++--. -.++.+..+++.||.|+.|++...+. +...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~---~~~~~~~c~~~~dg~ir~~n~~p~k~------~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN---GRDSSLGCVGAQDGRIRACNIKPNKV------LGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecccc---ccccceeEEeccCCceeeeccccCce------eeee
Confidence 56899999999999998 333333333334455554321 24456889999999999999988763 5555
Q ss_pred cCCC-CceeEEEEeecCCeEEEEE--eCCCeEEEEECCCC
Q 010784 255 YGHE-KPIKLMSVAGHKSFLLVTI--SKDSKVRVWDTSTS 291 (501)
Q Consensus 255 ~~~~-~~v~~l~~~~~~~~~l~s~--s~dg~v~vwd~~~~ 291 (501)
..|+ .++..+.... .+..+..+ |.|..++.|++..-
T Consensus 141 g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 141 GQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhh
Confidence 5566 4555444443 45556666 67777777777653
No 378
>PHA02713 hypothetical protein; Provisional
Probab=96.90 E-value=0.23 Score=49.59 Aligned_cols=190 Identities=8% Similarity=0.068 Sum_probs=93.7
Q ss_pred CCCEEEEeeCC------CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC-----eEEEEECC
Q 010784 221 SGKILASGGED------ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS-----KVRVWDTS 289 (501)
Q Consensus 221 ~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg-----~v~vwd~~ 289 (501)
++.+++.|+.+ ..+..||..++.- ..+..+....... +++.. ++.+.+.||.++ .+..||..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W----~~~~~m~~~R~~~-~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH----VELPPMIKNRCRF-SLAVI--DDTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeE----eeCCCCcchhhce-eEEEE--CCEEEEECCcCCCCCCceEEEEECC
Confidence 56777777754 2466778766531 1122222111111 22332 677888888764 47889988
Q ss_pred CCccccceecccceecCCCceeeecCCCeEEEEeC-------------------------CcEEEEEcCCCceEeeeccC
Q 010784 290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------------------------SSVVTIDLRTMQKVMTPAIC 344 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~i~~~d~~~~~~~~~~~~~ 344 (501)
+.+.... ..........++...++.+++..| ..+..||.++.+-...-...
T Consensus 376 ~~~W~~~----~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~ 451 (557)
T PHA02713 376 DDKWKML----PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW 451 (557)
T ss_pred CCeEEEC----CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence 7643221 111111111122222344444433 13667787765432211111
Q ss_pred CCcEEEEEEcCCCcEEEEEcCC------c-EEEEecCC-CCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCC--c
Q 010784 345 KPILHSFSIMPSKSLICTGGIG------K-AMTWDIRR-SQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDL--R 414 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~~d------~-i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg--~ 414 (501)
......-...-++++.+.|+.+ . +..||..+ .+ ...+..+...... .+++...+++.+.|+.|| .
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~-~~~~~~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA-LHTILHDNTIMMLHCYESYML 526 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc-ceeEEECCEEEEEeeecceee
Confidence 1111111122257777777632 3 67788886 33 2333444332222 334444557777777888 6
Q ss_pred EEEEeCCCcccc
Q 010784 415 INIWETDTGMLA 426 (501)
Q Consensus 415 i~iwd~~~~~~~ 426 (501)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 778888776544
No 379
>PHA02713 hypothetical protein; Provisional
Probab=96.80 E-value=0.34 Score=48.45 Aligned_cols=190 Identities=9% Similarity=0.008 Sum_probs=95.6
Q ss_pred CCeEEEEEeCC------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCc
Q 010784 270 KSFLLVTISKD------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQ 336 (501)
Q Consensus 270 ~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~ 336 (501)
++.+++.||.+ ..+..||..+..... .........-..+...++.+++..|. .+..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~----~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE----LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEee----CCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 66778888754 347788887764321 11111111122333344555555442 47889987654
Q ss_pred eEe--eeccCCCcEEEEEEcCCCcEEEEEcCC-----------------------c-EEEEecCCCCCCCCCCCcccccC
Q 010784 337 KVM--TPAICKPILHSFSIMPSKSLICTGGIG-----------------------K-AMTWDIRRSQDAVKPQPMAELDG 390 (501)
Q Consensus 337 ~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----------------------~-i~iwd~~~~~~~~~~~~~~~~~~ 390 (501)
-.. .+.........+.+ +|++.+.|+.+ . +..||..+.+ ...+..+..
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~----W~~v~~m~~ 452 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI----WETLPNFWT 452 (557)
T ss_pred EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe----EeecCCCCc
Confidence 322 22211111222222 67788877732 2 6778877653 222222221
Q ss_pred cccCeEEEEecCCeEEEEecCC------CcEEEEeCCC-cc--cccccccCCCCCCCcceeeeEeeccccEEEEeecCCC
Q 010784 391 HVGSVTQLHMDPYKIVTGGRDD------LRINIWETDT-GM--LANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEP 461 (501)
Q Consensus 391 h~~~v~~l~~~~~~~l~~gs~d------g~i~iwd~~~-~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 461 (501)
.... .+++...+++.+.|+.+ ..+..||..+ .+ .+..+. ........++ -+|+..++||.+..
T Consensus 453 ~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-----~~r~~~~~~~--~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 453 GTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-----SRLSALHTIL--HDNTIMMLHCYESY 524 (557)
T ss_pred cccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-----cccccceeEE--ECCEEEEEeeecce
Confidence 1111 23344445565655543 2467899886 33 333332 1112222222 38888899986533
Q ss_pred ceEEEeeccCCcccee
Q 010784 462 GLLQFRDFSNATCPVL 477 (501)
Q Consensus 462 g~i~~w~~~~~~~~~~ 477 (501)
..+..||..+++-..+
T Consensus 525 ~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 525 MLQDTFNVYTYEWNHI 540 (557)
T ss_pred eehhhcCcccccccch
Confidence 3777788777664433
No 380
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.80 E-value=0.092 Score=51.43 Aligned_cols=138 Identities=10% Similarity=0.009 Sum_probs=81.2
Q ss_pred CCCCEEEEeeCCCcEEEEeccC----CCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784 220 GSGKILASGGEDATVRLWSLSS----SGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR 295 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 295 (501)
++|++...+ ++.|.+.|..+ +.. ....+. -......+.++|+....++++..+.+|.|.|+.+.+...
T Consensus 286 kdGK~~~V~--gn~V~VID~~t~~~~~~~-----v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 286 KAGKFKTIG--GSKVPVVDGRKAANAGSA-----LTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hCCCEEEEC--CCEEEEEECCccccCCcc-----eEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 466666653 57899999887 222 233333 344557889999444455555669999999998865311
Q ss_pred c------eecccceecCCCceeeecCCCeEEEE---eCCcEEEEEcCC----------CceEeeeccCCCcE-----EEE
Q 010784 296 S------SCCVGMTSVPGVPVDMKCHESMLYIA---SGSSVVTIDLRT----------MQKVMTPAICKPIL-----HSF 351 (501)
Q Consensus 296 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~----------~~~~~~~~~~~~~v-----~~v 351 (501)
. ..........-.++...+++++...+ .++++..|++.+ ...+..+..|-.+- ..=
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 1 01122224455666777777654333 357999999876 22333343332221 122
Q ss_pred EEcCCCcEEEEEcC
Q 010784 352 SIMPSKSLICTGGI 365 (501)
Q Consensus 352 ~~~~~~~~l~~~~~ 365 (501)
.-.|+|++|++...
T Consensus 438 t~~~dgk~l~~~nk 451 (635)
T PRK02888 438 TKEADGKWLVSLNK 451 (635)
T ss_pred cCCCCCCEEEEccc
Confidence 23578888887763
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.64 E-value=0.99 Score=46.26 Aligned_cols=293 Identities=16% Similarity=0.039 Sum_probs=145.9
Q ss_pred EeeccCcCcccccCCCCcCcEEEEeeCCCceEEec------CCc---eeeeccCCCCceEEEEeeecCCCCCCEEEEee-
Q 010784 160 RLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW------KGS---CQRCFKGHNGPVSTLSDKLLGDGSGKILASGG- 229 (501)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd------~~~---~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~- 229 (501)
..-+.++.++..+-..-+...+++||.-|.-++-. .+. .+.++. .-+||..++.--.....+..+++++
T Consensus 299 kve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsG 377 (1096)
T KOG1897|consen 299 KVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSG 377 (1096)
T ss_pred EEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeC
Confidence 33333333443333333577888999877666554 111 112333 3468888876411111334566554
Q ss_pred --CCCcEEEEeccCCCccccccceeeccCCCCceeEEE--EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceec
Q 010784 230 --EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS--VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSV 305 (501)
Q Consensus 230 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 305 (501)
.||++|+..-.-+-. + .-...+.| -..++.++ +.++-.++++.+-. +.-++..+... ............
T Consensus 378 a~kdgSLRiiRngi~I~--e-~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~eTrvl~i~~e--~ee~~~~gf~~~ 450 (1096)
T KOG1897|consen 378 AFKDGSLRIIRNGIGID--E-LASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-SETRVLNISEE--VEETEDPGFSTD 450 (1096)
T ss_pred CCCCCcEEEEecccccc--e-eeEeecCC-ccceeEeeccccccCCcEEEEEec-cceEEEEEccc--eEEecccccccc
Confidence 589999986443221 0 01222333 34556666 44433345554433 34455555432 111111111111
Q ss_pred CCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCC
Q 010784 306 PGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQP 384 (501)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 384 (501)
....++-....+.++-++...|++++-. .....+.. .+.++....+.+...++.++.+. +...++......
T Consensus 451 ~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~----- 522 (1096)
T KOG1897|consen 451 EQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR----- 522 (1096)
T ss_pred CceEEEEccCCceEEEEecccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeecccee-----
Confidence 2222222333444555566678887765 23333333 33444444445555666677666 666666654411
Q ss_pred cccccCcccCeEEEEecCC-------eEEEEecCCCcEEEEeC-CCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 385 MAELDGHVGSVTQLHMDPY-------KIVTGGRDDLRINIWET-DTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~~-------~~l~~gs~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
...-......|.|+.++|- ++++.|..+..+.+--. .+...+....... .--...|.-..|-.|+.+|.++
T Consensus 523 e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-~~iPRSIl~~~~e~d~~yLlva 601 (1096)
T KOG1897|consen 523 EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-EIIPRSILLTTFEGDIHYLLVA 601 (1096)
T ss_pred eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-CccchheeeEEeeccceEEEEE
Confidence 0111122567889988862 48888877666554432 3332222221111 1112334555677778999999
Q ss_pred ecCCCceEEEeeccC
Q 010784 457 SYGEPGLLQFRDFSN 471 (501)
Q Consensus 457 ~~d~~g~i~~w~~~~ 471 (501)
. +||.+..+-+..
T Consensus 602 l--gdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 602 L--GDGALLYFVLDI 614 (1096)
T ss_pred c--CCceEEEEEEEc
Confidence 8 669888776543
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.0078 Score=50.01 Aligned_cols=105 Identities=15% Similarity=0.085 Sum_probs=67.8
Q ss_pred cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec--CCcee
Q 010784 122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--KGSCQ 199 (501)
Q Consensus 122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~ 199 (501)
+.-+++|..+|.|.+|++.-..........-...|-++--.-. ++.+..+++.||.|+.|+ ..+.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~------------~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR------------DSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecccccc------------ccceeEEeccCCceeeeccccCcee
Confidence 4568889999999999987433333333333334444322221 567899999999999999 45555
Q ss_pred eeccCCC-CceEEEEeeecCCCCCCEEEEe--eCCCcEEEEeccCC
Q 010784 200 RCFKGHN-GPVSTLSDKLLGDGSGKILASG--GEDATVRLWSLSSS 242 (501)
Q Consensus 200 ~~~~~h~-~~v~~l~~s~~~~~~~~~l~sg--~~dg~i~iwd~~~~ 242 (501)
.....|+ .++..+..+ ..+.+++++ |.|..++.|++...
T Consensus 138 g~~g~h~~~~~e~~ivv----~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVV----GSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeeccccCCCcceeEEe----cCCceEEeeccccchhhhhcchhhh
Confidence 5555566 455555443 556677776 77777777777654
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.56 E-value=0.46 Score=41.41 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=107.1
Q ss_pred eEEEEeeecCCCCCCEEEEeeCCC--cEEEEeccCCCccccccceeecc-CCCCceeEEEEeecCCeEEEEEeCCCeEEE
Q 010784 209 VSTLSDKLLGDGSGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLY-GHEKPIKLMSVAGHKSFLLVTISKDSKVRV 285 (501)
Q Consensus 209 v~~l~~s~~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~v 285 (501)
...+.|. .++.++-+.+.-| .|+.+|+.+++. ..... ...---..+... ++.+..-.=.++...+
T Consensus 47 TQGL~~~----~~g~LyESTG~yG~S~l~~~d~~tg~~------~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 47 TQGLEFL----DDGTLYESTGLYGQSSLRKVDLETGKV------LQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEEE----ETTEEEEEECSTTEEEEEEEETTTSSE------EEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEE
T ss_pred CccEEec----CCCEEEEeCCCCCcEEEEEEECCCCcE------EEEEECCccccceeEEEE--CCEEEEEEecCCeEEE
Confidence 4467773 4677777777666 799999999863 22221 122223455555 4556666677899999
Q ss_pred EECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeeccC-----CCcEEEEEEcCCCcE
Q 010784 286 WDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAIC-----KPILHSFSIMPSKSL 359 (501)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~ 359 (501)
||..+.+.+.. +..++.-+.+..++..+++..|+ .+..+|..+.+....+... -..++.+.+- +|.+
T Consensus 115 yd~~tl~~~~~------~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 115 YDPNTLKKIGT------FPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EETTTTEEEEE------EE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred EccccceEEEE------EecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 99998755443 34556777888888888888775 8999999888776655432 2235556664 5665
Q ss_pred EEEEcCC-cEEEEecCCCCCCCCCC---Cccc------ccCcccCeEEEEecCC--eEEEEe
Q 010784 360 ICTGGIG-KAMTWDIRRSQDAVKPQ---PMAE------LDGHVGSVTQLHMDPY--KIVTGG 409 (501)
Q Consensus 360 l~~~~~d-~i~iwd~~~~~~~~~~~---~~~~------~~~h~~~v~~l~~~~~--~~l~~g 409 (501)
.|-.-.. .|...|..+++...... .... ......-.+.|+++|. +++++|
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5555433 37777777766431000 0000 0011456789999987 999997
No 384
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.74 Score=43.64 Aligned_cols=201 Identities=15% Similarity=0.111 Sum_probs=125.3
Q ss_pred eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC----CcEEEEEcCCCc
Q 010784 261 IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG----SSVVTIDLRTMQ 336 (501)
Q Consensus 261 v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~ 336 (501)
-..+.+++...+.+++...++.|.+.|..+.+....... ......+.+......++++.. +.+.+.|..+.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 345677765555777777779999999776643322111 112233344445556677654 478899999988
Q ss_pred eEeeeccCCCcEEEEEEcCCCcEEEEEc-CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC--eEEEEecCC
Q 010784 337 KVMTPAICKPILHSFSIMPSKSLICTGG-IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGGRDD 412 (501)
Q Consensus 337 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~d 412 (501)
.+........+ ..++++|+|..++... .++ |.+.|........ ........ -......+.++|+ ++.++-..+
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccc-cCCCCceEEECCCCCEEEEEeccC
Confidence 88775543444 8999999999766666 455 9999977643320 00000111 1233456788888 455554333
Q ss_pred --CcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 413 --LRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 413 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
+.+...|..++.....-.. .+.. ....+.++|+|+.+.+... ..+.+.+-|.....
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~ 286 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANS-QGGTVSVIDGATDR 286 (381)
T ss_pred CCceEEEEeCCCceEEEeccc---cccC-CCCceeECCCCCEEEEEec-CCCeEEEEeCCCCc
Confidence 6899999988777665210 1112 4567899999999988853 34677777755433
No 385
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.41 E-value=0.21 Score=46.21 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=80.0
Q ss_pred CcEEEEEcCCC----ceEeee--ccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEE
Q 010784 325 SSVVTIDLRTM----QKVMTP--AICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQL 398 (501)
Q Consensus 325 ~~i~~~d~~~~----~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l 398 (501)
+.+.++++... ..+... ....++|++++-. ++. ++++....|.+|++...+.. .....+. ....+.++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l---~~~~~~~-~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTL---LKKAFYD-SPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSE---EEEEEE--BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccc---hhhheec-ceEEEEEE
Confidence 46888988884 222211 2347889998776 444 66666666999999887621 1112222 23367777
Q ss_pred EecCCeEEEEecCCCcEEEEeCCC-cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 399 HMDPYKIVTGGRDDLRINIWETDT-GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 399 ~~~~~~~l~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
....+.+++ |.....+.++.... ...+..+.. ......++++.|-++++.++.+. .+|.+.++.+..
T Consensus 136 ~~~~~~I~v-gD~~~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~~D--~~gnl~~l~~~~ 203 (321)
T PF03178_consen 136 SVFKNYILV-GDAMKSVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIVGD--KDGNLFVLRYNP 203 (321)
T ss_dssp EEETTEEEE-EESSSSEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEEEE--TTSEEEEEEE-S
T ss_pred eccccEEEE-EEcccCEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEEEc--CCCeEEEEEECC
Confidence 777665554 45667788775543 222222211 12245688888887777777776 679999999874
No 386
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=96.41 E-value=0.013 Score=43.76 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=53.0
Q ss_pred cccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhcCccccCCC-CCcchhHHHHHHHHH
Q 010784 18 TAIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQWPQVLVSGS-LPTVRVREAYLARRI 91 (501)
Q Consensus 18 ~~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (501)
..+.++|.+++.-||..+++..|.++..-|-.+.. .++.||++++.+.||....... .....|+..|.+...
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~--~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIE--DTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK 74 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcch--hhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence 34678999999999999999999999888744433 4789999999999874222111 123468888876443
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.054 Score=50.85 Aligned_cols=147 Identities=13% Similarity=0.130 Sum_probs=98.2
Q ss_pred cEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCc-
Q 010784 122 DIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGS- 197 (501)
Q Consensus 122 ~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~- 197 (501)
..++.+|.....++-.|++.| +++..++-|.+ |+-+.+.|++....+ +...=+.|-.|..|.-|| .+.
T Consensus 346 nlil~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql------~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQL------TSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred ceEeeCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcc------cccccEEeecCCceEEecccccCcc
Confidence 345567777777888899986 88888888877 888888885421111 112223455688888898 333
Q ss_pred eeeeccCC----CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeE
Q 010784 198 CQRCFKGH----NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFL 273 (501)
Q Consensus 198 ~~~~~~~h----~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 273 (501)
.+....+| .....|.+- ....+++.||.+|.||+||--... ...-+.+-..+|..|..+. +|..
T Consensus 418 kl~~~q~kqy~~k~nFsc~aT-----T~sG~IvvgS~~GdIRLYdri~~~------AKTAlPgLG~~I~hVdvta-dGKw 485 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFAT-----TESGYIVVGSLKGDIRLYDRIGRR------AKTALPGLGDAIKHVDVTA-DGKW 485 (644)
T ss_pred eeeeeeccccccccccceeee-----cCCceEEEeecCCcEEeehhhhhh------hhhcccccCCceeeEEeec-cCcE
Confidence 22222222 334566664 456699999999999999984322 3556778889999999996 6666
Q ss_pred EEEEeCCCeEEEEECC
Q 010784 274 LVTISKDSKVRVWDTS 289 (501)
Q Consensus 274 l~s~s~dg~v~vwd~~ 289 (501)
++.. .+..+.+.++.
T Consensus 486 il~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 486 ILAT-CKTYLLLIDTL 500 (644)
T ss_pred EEEe-cccEEEEEEEe
Confidence 5544 45677777765
No 388
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.37 E-value=0.00067 Score=66.90 Aligned_cols=290 Identities=11% Similarity=0.038 Sum_probs=145.3
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec----CCceeeec----
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW----KGSCQRCF---- 202 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd----~~~~~~~~---- 202 (501)
.+.+++-+..+..+....++|..+.|-.++|-... +|.+. -.-|.+.||+ .|+....+
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~---------~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~ 175 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTK---------CPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTP 175 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccC---------ChHHH-----HHhhhhheeehHhhccccccceEEee
Confidence 45666666665333234567788889899885421 11223 3346788897 44433222
Q ss_pred -cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC
Q 010784 203 -KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS 281 (501)
Q Consensus 203 -~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg 281 (501)
..-...+.-+.|+|.- .+.-++..+-.+++|++.+.++.. ...+.+|...+..+++...+-..+..-+-||
T Consensus 176 ~~p~gs~~~~V~wcp~~-~~~~~ic~~~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG 247 (1283)
T KOG1916|consen 176 ITPYGSDPQLVSWCPIA-VNKVYICYGLKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG 247 (1283)
T ss_pred cCcCCCCcceeeecccc-cccceeeeccCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCC
Confidence 2223344556665433 345788888899999998887753 3556678887776665432222333334444
Q ss_pred eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCC-CcEEEEEEcCC----
Q 010784 282 KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICK-PILHSFSIMPS---- 356 (501)
Q Consensus 282 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~v~~~~~---- 356 (501)
++..|-+..|.... -.+++.+.....++...+.|. ++-.|..++.+
T Consensus 248 tv~a~a~~dG~v~f-----------------------------~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~ 298 (1283)
T KOG1916|consen 248 TVFAWAISDGSVGF-----------------------------YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILV 298 (1283)
T ss_pred cEEEEeecCCccce-----------------------------eeeeeeccccHhhhhccCCCCCCCceeeeeccccccC
Confidence 44444444331100 022333333333344444443 22222222221
Q ss_pred -----CcEEEEEc-CCc-EEEEecCCCCCCCC--CCCcccccCcccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccc
Q 010784 357 -----KSLICTGG-IGK-AMTWDIRRSQDAVK--PQPMAELDGHVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 357 -----~~~l~~~~-~d~-i~iwd~~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
-.++++++ .++ +++|.....++... ...+.....|.+.|+.+....- .-+++.+-++.|++|.-.....
T Consensus 299 v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~ 378 (1283)
T KOG1916|consen 299 VSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQP 378 (1283)
T ss_pred CccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhh
Confidence 12455555 455 99999887665410 1112222344455544333222 2234446789999997544322
Q ss_pred ccccccCCCCCCCcceeee--Eee---ccccEEEEeecCCCceEEEeeccCCccce
Q 010784 426 ANSLLCNYPEEADISTGCS--AMA---VSGCRIVTASYGEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 426 ~~~~~~~~~~~~~~~v~~~--~~s---~~g~~l~s~~~d~~g~i~~w~~~~~~~~~ 476 (501)
......+. ..+|.+. .-| ++...+.+|+. .+..+.+|-+.-.+..+
T Consensus 379 ~~vs~~~~----~hpV~S~i~v~S~~R~~h~e~~~~~~-~nr~~~i~~s~g~~g~l 429 (1283)
T KOG1916|consen 379 LVVSRPHD----GHPVLSAIFVTSPERPDHIELITGGP-LNRELKIWVSAGEEGWL 429 (1283)
T ss_pred hhhhhhhh----cceeccccccccCCCccccccccCCc-chhhhhhhhhccccccc
Confidence 22222111 1122221 222 23445555554 56677788766544433
No 389
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.36 E-value=0.91 Score=42.61 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=130.7
Q ss_pred CcCcEEEEee---------CCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784 176 RTENVLVTSS---------CDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKR 245 (501)
Q Consensus 176 ~~~~~l~s~~---------~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 245 (501)
||+++++... ..+.+.|+| ....+..+......+....|+ |+|+.++-.. ++.|.+++..++..
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~s----P~g~~~~~v~-~~nly~~~~~~~~~- 75 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWS----PDGKYIAFVR-DNNLYLRDLATGQE- 75 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-----SSSTEEEEEE-TTEEEEESSTTSEE-
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceee----cCCCeeEEEe-cCceEEEECCCCCe-
Confidence 4777777632 245677888 333444444346778889997 8899988875 57899998876642
Q ss_pred ccccceeeccCC----------------CCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCCccccceecccceecCCC
Q 010784 246 GQQALKATLYGH----------------EKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTSSAVRSSCCVGMTSVPGV 308 (501)
Q Consensus 246 ~~~~~~~~~~~~----------------~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 308 (501)
...+..+- -+.-..+-|+| +++.|+... .+..|..+.+........ ....
T Consensus 76 ----~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~--------~yp~ 142 (353)
T PF00930_consen 76 ----TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS--------QYPE 142 (353)
T ss_dssp ----EESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE--------SS-E
T ss_pred ----EEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc--------cCCc
Confidence 11111110 01124678998 555555544 445555444322111000 0000
Q ss_pred ceeeecCCCeEEEEeCC-----cEEEEEcCCCceEe-ee----ccCCCcEEEEEEcCCCc-EEEEEc---CCc--EEEEe
Q 010784 309 PVDMKCHESMLYIASGS-----SVVTIDLRTMQKVM-TP----AICKPILHSFSIMPSKS-LICTGG---IGK--AMTWD 372 (501)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~~~~-~~----~~~~~~v~~v~~~~~~~-~l~~~~---~d~--i~iwd 372 (501)
...+ .+--.|. .+.++|+.+++... .. ......+..+.|.+++. +++.-. .+. +.+.|
T Consensus 143 ~~~~------~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d 216 (353)
T PF00930_consen 143 VESI------RYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCD 216 (353)
T ss_dssp EEEE------E--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEE
T ss_pred cccc------ccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEE
Confidence 0000 0000111 57788888876532 11 23356789999999988 444333 222 67778
Q ss_pred cCCCCCCCCCCCcccccCcccCe---EEEEec-CC--eEEEEecCCCcEEEE--eCCCcccccccccCCCCCCCcce-ee
Q 010784 373 IRRSQDAVKPQPMAELDGHVGSV---TQLHMD-PY--KIVTGGRDDLRINIW--ETDTGMLANSLLCNYPEEADIST-GC 443 (501)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~-~~--~~l~~gs~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v-~~ 443 (501)
..++... .+.. ....+.| ....+. ++ .++.....||--+|+ +...+. ...+. ...-.| ..
T Consensus 217 ~~tg~~~----~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT-----~G~~~V~~i 285 (353)
T PF00930_consen 217 ASTGETR----VVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLT-----SGDWEVTSI 285 (353)
T ss_dssp ECTTTCE----EEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS------SSS-EEEE
T ss_pred CCCCcee----EEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccc-----cCceeeccc
Confidence 8775532 1111 1112222 244443 44 666665677765555 444443 33442 123345 34
Q ss_pred eEeeccccEEE-EeecCCCceEEEeeccCC
Q 010784 444 SAMAVSGCRIV-TASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 444 ~~~s~~g~~l~-s~~~d~~g~i~~w~~~~~ 472 (501)
+.++++++.|. +|..++.+.-.+|.++-.
T Consensus 286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 78888877654 444322345555555544
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.28 E-value=1.2 Score=43.00 Aligned_cols=241 Identities=10% Similarity=0.085 Sum_probs=119.0
Q ss_pred ceEEeeCCcEEEeec-----CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 114 DHILLDNNDIFSTQG-----SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 114 ~~~~~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
....++|+|.++|.+ +....+++.|+.++......+... .-..+.|.+ +++.|+....+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-------------d~~~~~y~~~~~ 191 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-------------DGKGFFYTRFDE 191 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-------------TSSEEEEEECST
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-------------CCCEEEEEEeCc
Confidence 456788999988743 446789999999873322233221 122389998 666665554333
Q ss_pred -----------ceEEecCCce----eeeccCCCCc--eEEEEeeecCCCCCCEEEEeeCC----CcEEEEeccCCCcccc
Q 010784 189 -----------SIRLWWKGSC----QRCFKGHNGP--VSTLSDKLLGDGSGKILASGGED----ATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 189 -----------~i~vwd~~~~----~~~~~~h~~~--v~~l~~s~~~~~~~~~l~sg~~d----g~i~iwd~~~~~~~~~ 247 (501)
.|+.|..|.. ...+...... ...+..+ .++++|+..+.. ..+.+.++..+.. ..
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s----~d~~~l~i~~~~~~~~s~v~~~d~~~~~~-~~ 266 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS----KDGRYLFISSSSGTSESEVYLLDLDDGGS-PD 266 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-----TTSSEEEEEEESSSSEEEEEEEECCCTTT-SS
T ss_pred ccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec----CcccEEEEEEEccccCCeEEEEeccccCC-Cc
Confidence 2566663322 2334433333 4566665 788887754332 3467777776410 00
Q ss_pred ccceeeccCCCCcee-EEEEeecCCeEEEEEe---CCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe
Q 010784 248 QALKATLYGHEKPIK-LMSVAGHKSFLLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS 323 (501)
Q Consensus 248 ~~~~~~~~~~~~~v~-~l~~~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (501)
.....+......+. .+... ++.+++... ..+.|...++...........+...........+....+.+++..
T Consensus 267 -~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 267 -AKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp --SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred -CCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 01223332333333 33333 444444432 346777778777653111111111011123444555555555543
Q ss_pred --CC--cEEEEEcCCCceEeeec-cCCCcEEEEEEcCCCc-EEE-EEcCCc---EEEEecCCCC
Q 010784 324 --GS--SVVTIDLRTMQKVMTPA-ICKPILHSFSIMPSKS-LIC-TGGIGK---AMTWDIRRSQ 377 (501)
Q Consensus 324 --~~--~i~~~d~~~~~~~~~~~-~~~~~v~~v~~~~~~~-~l~-~~~~d~---i~iwd~~~~~ 377 (501)
++ .|.++++..+....... ...+.|..+...+++. +.+ ..+--. +..||+.+++
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 22 78999998333333333 2345566666555543 222 333222 7777877765
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.74 Score=41.78 Aligned_cols=189 Identities=15% Similarity=0.060 Sum_probs=110.1
Q ss_pred EeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc--
Q 010784 266 VAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI-- 343 (501)
Q Consensus 266 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-- 343 (501)
|.+..+.++.+--..+.|.-|+..+++... ...+.........+....++++...+.+++.+++..+..+..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~------~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV------FPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE------EECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEecccc
Confidence 454444456666667888888887653211 112222234445567778888888888998876666322221
Q ss_pred ---CCCcEEEEEEcCCCcEEEEEcC---------Cc-EEEEecC-CCCCCCCCCCcccccCcccCeEEEEecCC--eEEE
Q 010784 344 ---CKPILHSFSIMPSKSLICTGGI---------GK-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQLHMDPY--KIVT 407 (501)
Q Consensus 344 ---~~~~v~~v~~~~~~~~l~~~~~---------d~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~ 407 (501)
.....+.+...|+|.+.++... .. -.+|-+. .+.. +..+..+-..-+.|+|||+ .+++
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~------~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV------VRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE------EEeecCcEEecCceEECCCCCEEEE
Confidence 1234567888999988776555 11 2344444 2222 2444445556789999999 6666
Q ss_pred EecCCCcEEEEeCCC--cccccc---cccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 408 GGRDDLRINIWETDT--GMLANS---LLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 408 ~gs~dg~i~iwd~~~--~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
+=+..+.|.-|++.. +..-.. +.. ....+..-.++...+|.+.+++.. ..+.|.+|+-.
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~---~~~~G~PDG~~vDadG~lw~~a~~-~g~~v~~~~pd 243 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDF---DEEPGLPDGMAVDADGNLWVAAVW-GGGRVVRFNPD 243 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEc---cCCCCCCCceEEeCCCCEEEeccc-CCceEEEECCC
Confidence 666678899888763 211111 110 112344556777888887765442 22378887754
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.22 E-value=0.016 Score=35.34 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=29.5
Q ss_pred ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccc
Q 010784 392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLA 426 (501)
Q Consensus 392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~ 426 (501)
...|..++|+|. .++|.|+.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999 99999999999999998 56543
No 393
>PHA03098 kelch-like protein; Provisional
Probab=96.07 E-value=0.7 Score=46.27 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=87.6
Q ss_pred CCCEEEEeeCCC------cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC-----CeEEEEECC
Q 010784 221 SGKILASGGEDA------TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-----SKVRVWDTS 289 (501)
Q Consensus 221 ~~~~l~sg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-----g~v~vwd~~ 289 (501)
++.+++.|+.++ .+..||..+..- .....+....... ++... ++.+++.||.+ ..+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----NKVPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee----eECCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCC
Confidence 556777776543 466777766542 1111111111111 22222 66788888765 346778887
Q ss_pred CCccccceecccceecCCCceeeecCCCeEEEEeC--------CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcE
Q 010784 290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG--------SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSL 359 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~ 359 (501)
+.+.... .....+....+....++.+++..| ..+..||..+.+-... +....... ++ ...++.+
T Consensus 367 ~~~W~~~----~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~i 440 (534)
T PHA03098 367 ESKWREE----PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKI 440 (534)
T ss_pred CCceeeC----CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEE
Confidence 7654221 111111111222333455555544 2577888876543221 11111111 22 2235677
Q ss_pred EEEEcCC--------c-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCcc
Q 010784 360 ICTGGIG--------K-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTGM 424 (501)
Q Consensus 360 l~~~~~d--------~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~~ 424 (501)
++.|+.+ . +.+||..+.+- ..+..+....... +++...+++++.|+.+ ..|.+||..+.+
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKW----TELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCce----eeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 7777631 2 78888877542 1122221111111 2222244666665543 467888877643
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.05 E-value=0.76 Score=38.78 Aligned_cols=95 Identities=5% Similarity=-0.019 Sum_probs=58.4
Q ss_pred EEEEEEcCCCcEEEEEc-CCc-EEEEe--cCCCCCCCCCCCcccccC---c-ccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784 348 LHSFSIMPSKSLICTGG-IGK-AMTWD--IRRSQDAVKPQPMAELDG---H-VGSVTQLHMDPY-KIVTGGRDDLRINIW 418 (501)
Q Consensus 348 v~~v~~~~~~~~l~~~~-~d~-i~iwd--~~~~~~~~~~~~~~~~~~---h-~~~v~~l~~~~~-~~l~~gs~dg~i~iw 418 (501)
-+.++|+.+.+.+.... .+. |.-|| ..++.... ++.+..++. . ....-.++++.+ .+.++.-..++|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-r~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-RKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccC-cceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 45788887766555444 444 76677 55554321 111222221 0 111223444555 666666688999999
Q ss_pred eCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 419 ETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
|..+|+.+.++. -....|++++|--
T Consensus 239 dp~tGK~L~eik-----lPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIK-----LPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEE-----cCCCceEEEEecC
Confidence 999999999994 3466799999964
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.84 E-value=1.8 Score=41.99 Aligned_cols=162 Identities=11% Similarity=0.042 Sum_probs=88.8
Q ss_pred CCcceeEEEeeccCcCcccccCCCCcCcEEEEee---CCCceEEecCCceeeeccCCCCceEEEEeeecCCCCCCEEEEe
Q 010784 152 HKARITCMRLFPLHETSLFRSEPQRTENVLVTSS---CDHSIRLWWKGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASG 228 (501)
Q Consensus 152 h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg 228 (501)
--.+|..++|. ||+.++-.. .+|.+++=|. +.+ +.-..|..+.|.|....+-..+.+.
T Consensus 18 AiHPvhGlaWT--------------DGkqVvLT~L~l~~gE~kfGds-~vi----GqFEhV~GlsW~P~~~~~~paLLAV 78 (671)
T PF15390_consen 18 AIHPVHGLAWT--------------DGKQVVLTDLQLHNGEPKFGDS-KVI----GQFEHVHGLSWAPPCTADTPALLAV 78 (671)
T ss_pred hhccccceEec--------------CCCEEEEEeeeeeCCccccCCc-cEe----eccceeeeeeecCcccCCCCceEEE
Confidence 34589999997 566665433 2344433221 122 3445689999987665556566666
Q ss_pred eCCCcEEEEeccCCCc-cccccceeeccC-CCCc--eeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceeccccee
Q 010784 229 GEDATVRLWSLSSSGK-RGQQALKATLYG-HEKP--IKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS 304 (501)
Q Consensus 229 ~~dg~i~iwd~~~~~~-~~~~~~~~~~~~-~~~~--v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 304 (501)
.....|.||.+..... ..+....++-.- ..-+ -....|+|. ...|+.-.....-.+++++....
T Consensus 79 QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvSV~~sV~~d~s----------- 146 (671)
T PF15390_consen 79 QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVSVLPSVHCDSS----------- 146 (671)
T ss_pred eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEecCceeEeeeeeeCCc-----------
Confidence 7788999999873221 011111111110 0111 134567773 44444443333333445443211
Q ss_pred cCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc--EEEEecCCC
Q 010784 305 VPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK--AMTWDIRRS 376 (501)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~--i~iwd~~~~ 376 (501)
+....+ ...+-|.|.+|.+||+.|+++-... -++||-...
T Consensus 147 -------------------------------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 147 -------------------------------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred -------------------------------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 011112 1367799999999998887776555 888986543
No 396
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.82 E-value=1.7 Score=41.69 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=91.5
Q ss_pred CceeeeccCCCCceEEEEeeecCCCCCCEEEEee---CC-CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC
Q 010784 196 GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGG---ED-ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS 271 (501)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 271 (501)
+.....+..-...+..-+|+ +++..++--+ .. ..+.+++++++.. ..+..+.++.. .-+|+|++.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws----~~~~~~~y~~f~~~~~~~i~~~~l~~g~~----~~i~~~~g~~~---~P~fspDG~ 250 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWS----PDGKKLAYVSFELGGCPRIYYLDLNTGKR----PVILNFNGNNG---APAFSPDGS 250 (425)
T ss_pred CcceeEecccCcceeccccC----cCCCceEEEEEecCCCceEEEEeccCCcc----ceeeccCCccC---CccCCCCCC
Confidence 33444444444455555665 5555544321 22 4689999998764 22333444444 347998666
Q ss_pred eEEEEEeCCCe--EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC----cEEEEEcCCCceEeeeccCC
Q 010784 272 FLLVTISKDSK--VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS----SVVTIDLRTMQKVMTPAICK 345 (501)
Q Consensus 272 ~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~ 345 (501)
.++++...||. |.++|+.+++..+ ......... .-.+..+++.++.+++. .|.+++.+............
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee---cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence 66777777776 5556777665222 111111111 22333344445555542 78888888776533222212
Q ss_pred CcEEEEEEcCCCcEEEEEc--CCc--EEEEecCCCC
Q 010784 346 PILHSFSIMPSKSLICTGG--IGK--AMTWDIRRSQ 377 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~--~d~--i~iwd~~~~~ 377 (501)
.. ..-.++|||++++..+ .+. |.+.|+.++.
T Consensus 327 ~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 327 GN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 22 2677899999988777 333 6677776653
No 397
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=2.6 Score=42.12 Aligned_cols=180 Identities=11% Similarity=0.059 Sum_probs=91.3
Q ss_pred CCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEE
Q 010784 187 DHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMS 265 (501)
Q Consensus 187 dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 265 (501)
--.|+|++ .|..+..+.-..+.+..|.|+ +...|++...+|+++++++....... ...-.......|....
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs-----~~eeLI~v~k~g~v~Vy~~~ge~ie~---~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGWS-----DDEELICVQKDGTVHVYGLLGEFIES---NSVGFESQMSDIVECR 134 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeeccc-----CCceEEEEeccceEEEeecchhhhcc---cccccccccCceeEEE
Confidence 34688999 888887765545588899995 56777778999999999987643200 0001122233344444
Q ss_pred EeecCCeEEEEEeCCCeEEEE-ECCCCccccceecccceecCCCceeeecCCCe--EEEEeC----CcEEEEEcCCCceE
Q 010784 266 VAGHKSFLLVTISKDSKVRVW-DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESM--LYIASG----SSVVTIDLRTMQKV 338 (501)
Q Consensus 266 ~~~~~~~~l~s~s~dg~v~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~i~~~d~~~~~~~ 338 (501)
+.. +|-.+++. +|.+.+- +.... .............+...+.+...+.. ..+..+ -.+...+....+.
T Consensus 135 ~f~-~GVavlt~--~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~- 209 (829)
T KOG2280|consen 135 FFH-NGVAVLTV--SGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL- 209 (829)
T ss_pred Eec-CceEEEec--CCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-
Confidence 442 45444443 3444433 33221 11111111111111122222222111 111111 1111111111111
Q ss_pred eeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCC
Q 010784 339 MTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 339 ~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
..+......+..+..||+.++|+--...+ |.+-+....+..
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 22222246678899999999999888777 888887765543
No 398
>PHA03098 kelch-like protein; Provisional
Probab=95.65 E-value=1.3 Score=44.48 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=70.5
Q ss_pred CCCEEEEeeCC-----CcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC------CeEEEEECC
Q 010784 221 SGKILASGGED-----ATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD------SKVRVWDTS 289 (501)
Q Consensus 221 ~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d------g~v~vwd~~ 289 (501)
++.+++.|+.+ ..+..||..++.- .....+...... .+++.. ++.+++.|+.+ ..+..||..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W----~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW----REEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce----eeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCC
Confidence 56777777765 3466788776542 111111111111 122222 56777777732 457889988
Q ss_pred CCccccceecccceecCCCceeeecCCCeEEEEeCC----------cEEEEEcCCCceEee--eccCCCcEEEEEEcCCC
Q 010784 290 TSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS----------SVVTIDLRTMQKVMT--PAICKPILHSFSIMPSK 357 (501)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~ 357 (501)
+.+..... .........++...++.+++..|. .+..||..+.+-... +.........+.+ ++
T Consensus 415 t~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~ 488 (534)
T PHA03098 415 TNKWSKGS----PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN 488 (534)
T ss_pred CCeeeecC----CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC
Confidence 76542211 111111111223334455555442 277888877653321 1111111122222 67
Q ss_pred cEEEEEcCC-----c-EEEEecCCCC
Q 010784 358 SLICTGGIG-----K-AMTWDIRRSQ 377 (501)
Q Consensus 358 ~~l~~~~~d-----~-i~iwd~~~~~ 377 (501)
++++.|+.+ . +.+||..+.+
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 777777743 3 8888887653
No 399
>PF13013 F-box-like_2: F-box-like domain
Probab=95.62 E-value=0.017 Score=42.57 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=29.5
Q ss_pred ccccccHHHHHHHHhcCChhhhHHHHhhChhHH
Q 010784 19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFK 51 (501)
Q Consensus 19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~ 51 (501)
.+.+||.|++..||.|++..++..+.+.|+..+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r 53 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYR 53 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 588999999999999999999999999988333
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.53 E-value=0.66 Score=43.36 Aligned_cols=202 Identities=16% Similarity=0.135 Sum_probs=89.8
Q ss_pred CCeEEEEEe-CCCeEEEEECCCCccccc-eecccc---e--ecCCCceeeecCCCe-EEEEe-C-------CcEEEEEcC
Q 010784 270 KSFLLVTIS-KDSKVRVWDTSTSSAVRS-SCCVGM---T--SVPGVPVDMKCHESM-LYIAS-G-------SSVVTIDLR 333 (501)
Q Consensus 270 ~~~~l~s~s-~dg~v~vwd~~~~~~~~~-~~~~~~---~--~~~~~~~~~~~~~~~-~~~~~-~-------~~i~~~d~~ 333 (501)
+.++|+..+ ..+.|+|.|+.+...... .+.... . .--..+-...+-+++ +++.+ + +.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666665 778999999985432111 011000 0 011122233333433 33322 1 268888888
Q ss_pred CCceEeeeccC---CCcEEEEEEcCCCcEEEEEcC--------------------Cc-EEEEecCCCCCCCCCCCccccc
Q 010784 334 TMQKVMTPAIC---KPILHSFSIMPSKSLICTGGI--------------------GK-AMTWDIRRSQDAVKPQPMAELD 389 (501)
Q Consensus 334 ~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~~~--------------------d~-i~iwd~~~~~~~~~~~~~~~~~ 389 (501)
+.+........ ...-+.+-+.|..+.+++... +. +.+||+.+.+.+ +++.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~------Q~id 239 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL------QTID 239 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE------EEEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe------eEEe
Confidence 87777655543 223467777888777777642 55 999999996654 5554
Q ss_pred Ccc--cCeEEEEe--cCC--eEEEEecCCCcEEEEeC-CCcc----cccccccCCCCC------------CCcceeeeEe
Q 010784 390 GHV--GSVTQLHM--DPY--KIVTGGRDDLRINIWET-DTGM----LANSLLCNYPEE------------ADISTGCSAM 446 (501)
Q Consensus 390 ~h~--~~v~~l~~--~~~--~~l~~gs~dg~i~iwd~-~~~~----~~~~~~~~~~~~------------~~~~v~~~~~ 446 (501)
--. ..+..|.| +|+ .-++++...++|-.|-- ..++ .+..+......+ -..-|+.+.+
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 322 23445555 454 33333335555554433 3221 111221100000 0234789999
Q ss_pred eccccEEEEeecCCCceEEEeeccCCccceee
Q 010784 447 AVSGCRIVTASYGEPGLLQFRDFSNATCPVLK 478 (501)
Q Consensus 447 s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s 478 (501)
|.|.++|..... ..|.|+.||++.+.++..+
T Consensus 320 SlDDrfLYvs~W-~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 320 SLDDRFLYVSNW-LHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp -TTS-EEEEEET-TTTEEEEEE-SSTTS-EEE
T ss_pred ccCCCEEEEEcc-cCCcEEEEecCCCCCCcEE
Confidence 999999999888 7899999999987776543
No 401
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=2.3 Score=40.29 Aligned_cols=190 Identities=19% Similarity=0.155 Sum_probs=116.4
Q ss_pred cCc-EEEEeeCCCceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEeccCCCccccccc
Q 010784 177 TEN-VLVTSSCDHSIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLSSSGKRGQQAL 250 (501)
Q Consensus 177 ~~~-~l~s~~~dg~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~ 250 (501)
.++ ..++...++.|.+.| ..+.......-. .-..+++. ++++.++.+.. ++++.+.|-.+...
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~----~~~~~vYV~n~~~~~~~vsvid~~t~~~------ 152 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD----PDGKYVYVANAGNGNNTVSVIDAATNKV------ 152 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC----CCCCEEEEEecccCCceEEEEeCCCCeE------
Confidence 455 566666678999998 333333332212 44567775 77877776665 67888888877663
Q ss_pred eeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCce--eeecCCCeEEEEeCC---
Q 010784 251 KATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPV--DMKCHESMLYIASGS--- 325 (501)
Q Consensus 251 ~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--- 325 (501)
......-..+ ..+++.|.....+++-..++.|.+.|.......+ ............+. .+..+....+++...
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 4443333344 7889998544456666688999999977664432 11111122223333 344455556666543
Q ss_pred -cEEEEEcCCCceEee-eccCCCcEEEEEEcCCCcEEEEEcCC-c-EEEEecCCCCCC
Q 010784 326 -SVVTIDLRTMQKVMT-PAICKPILHSFSIMPSKSLICTGGIG-K-AMTWDIRRSQDA 379 (501)
Q Consensus 326 -~i~~~d~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~d-~-i~iwd~~~~~~~ 379 (501)
.+...|..++..... ..........+..+|+|..+.+.... + +.+.|..+....
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 677788877776654 22211145678999999998888533 4 999998886543
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.39 E-value=0.047 Score=33.31 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=26.3
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW 194 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd 194 (501)
...|.+++|+| ..++||.|..+|.|.++.
T Consensus 11 ~~~v~~~~w~P-------------~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 11 PSRVSCMSWCP-------------TMDLIALGTEDGEVLVYR 39 (47)
T ss_pred CCcEEEEEECC-------------CCCEEEEEECCCeEEEEE
Confidence 45699999999 789999999999999987
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.30 E-value=2.6 Score=39.59 Aligned_cols=233 Identities=8% Similarity=0.022 Sum_probs=93.4
Q ss_pred CCCEEEEee-CCCcEEEEeccCCCccccccceeeccC---CC----CceeEEEEeecCCeEEEEEeC------CCeEEEE
Q 010784 221 SGKILASGG-EDATVRLWSLSSSGKRGQQALKATLYG---HE----KPIKLMSVAGHKSFLLVTISK------DSKVRVW 286 (501)
Q Consensus 221 ~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~----~~v~~l~~~~~~~~~l~s~s~------dg~v~vw 286 (501)
+.++|+..+ ..+.|.|.|+.+....++ +.+.+.. +. ..-..+...| ++.+++++-. -|.+.+.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~--l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR--LHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E--EEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc--eEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEE
Confidence 455666655 778999999986543222 2222221 11 1111222333 5667777522 2557777
Q ss_pred ECCCCccccceecccceecCCCceeeecCCCeEEEE-----------------------eCCcEEEEEcCCCceEeeecc
Q 010784 287 DTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIA-----------------------SGSSVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~i~~~d~~~~~~~~~~~~ 343 (501)
|-++.+.......... .....+.+-+.+...++. -|..+.+||+.+.+.++++..
T Consensus 163 D~~tf~v~g~We~~~~--~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRG--PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp -TTT--EEEE--SB-T--T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cCccccccceeccCCC--CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 7776554433222111 011112222222211111 134799999999999998875
Q ss_pred CCC--cEEEEEEcCC--CcEEEEEc--CCc-EEEEecCCCCCCC------C---------CCCcccccCcccCeEEEEec
Q 010784 344 CKP--ILHSFSIMPS--KSLICTGG--IGK-AMTWDIRRSQDAV------K---------PQPMAELDGHVGSVTQLHMD 401 (501)
Q Consensus 344 ~~~--~v~~v~~~~~--~~~l~~~~--~d~-i~iwd~~~~~~~~------~---------~~~~~~~~~h~~~v~~l~~~ 401 (501)
... ....+.|..+ ..+=.+|+ ... .++|....++-.. . +..+..+..-..-|+.|.+|
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 433 3556777544 44433333 344 4444433332110 0 01111122223457899999
Q ss_pred CC--eEEEEecCCCcEEEEeCCCc---ccccccccCCC-----------CCCCcceeeeEeeccccEEEEeec
Q 010784 402 PY--KIVTGGRDDLRINIWETDTG---MLANSLLCNYP-----------EEADISTGCSAMAVSGCRIVTASY 458 (501)
Q Consensus 402 ~~--~~l~~gs~dg~i~iwd~~~~---~~~~~~~~~~~-----------~~~~~~v~~~~~s~~g~~l~s~~~ 458 (501)
.+ .+.+++=.+|.|+.||+... ++..++..+.. ..-.+...-+..|-||+.|...++
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 88 55566668999999999763 23322211100 001122355788999998887653
No 404
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.25 E-value=1.6 Score=36.91 Aligned_cols=107 Identities=14% Similarity=0.048 Sum_probs=67.4
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEE--CCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWD--TSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
+.++|+.+...+.++-+.+-+|.-|| ..++.... .-.++|+++.+...
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn------------------------------r~~i~dlrk~~~~e 210 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN------------------------------RKVIFDLRKSQPFE 210 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccC------------------------------cceeEEeccCCCcC
Confidence 56777753445556667777887787 55553211 22355555543322
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEe
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGG 409 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~g 409 (501)
.... -.+++..+|.+.++.-.++ |.-.|..+++.+ .++.-....|++++|-.. -+.+++
T Consensus 211 ~~~P-----DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L------~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 211 SLEP-----DGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL------LEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCC-----CcceEccCCcEEEEEecCcEEEEECCCCCcEE------EEEEcCCCceEEEEecCCCccEEEEEe
Confidence 2211 2344456788888888777 999999998765 777766889999999643 444444
No 405
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.09 E-value=2.1 Score=37.41 Aligned_cols=205 Identities=12% Similarity=0.144 Sum_probs=106.7
Q ss_pred CCCCEEEEeeC-----CCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEE-ECCCCcc
Q 010784 220 GSGKILASGGE-----DATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVW-DTSTSSA 293 (501)
Q Consensus 220 ~~~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vw-d~~~~~~ 293 (501)
++|.+|+..-. -|.|-|||.+.+-+ .+..+..|.-.-..+.+.+ ++..++.+. |-|..- |....+
T Consensus 123 ~dG~~LYATEndfd~~rGViGvYd~r~~fq-----rvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~- 193 (366)
T COG3490 123 PDGRLLYATENDFDPNRGVIGVYDAREGFQ-----RVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTE- 193 (366)
T ss_pred CCCcEEEeecCCCCCCCceEEEEecccccc-----eecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccc-
Confidence 89999987533 37899999986543 4566777766666778886 676666553 334433 211110
Q ss_pred ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe--eec--cCCCcEEEEEEcCCCcEEEEEc-----
Q 010784 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM--TPA--ICKPILHSFSIMPSKSLICTGG----- 364 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~--~~~~~v~~v~~~~~~~~l~~~~----- 364 (501)
+.+.. ..-++.+.|..+++.+. ++. .+.-.|..++..+||..++.+-
T Consensus 194 ----------------lNlds--------MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~ 249 (366)
T COG3490 194 ----------------LNLDS--------MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR 249 (366)
T ss_pred ----------------cchhh--------cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence 00000 00134445555555543 222 3455677888888887666543
Q ss_pred CCc-EEEEecCCCCCCCC-CCCcccccCcccCeEEEEecCC-eEE-EEecCCCcEEEEeCCCcccccccccCCCCCCCcc
Q 010784 365 IGK-AMTWDIRRSQDAVK-PQPMAELDGHVGSVTQLHMDPY-KIV-TGGRDDLRINIWETDTGMLANSLLCNYPEEADIS 440 (501)
Q Consensus 365 ~d~-i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~-~~l-~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 440 (501)
+|. -.+=-.+.++.+.. ..+-.+.......|-+++.+.+ .++ +++-..+...+||..+|..+..-... .
T Consensus 250 ~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-------d 322 (366)
T COG3490 250 NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-------D 322 (366)
T ss_pred ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-------c
Confidence 122 11111122221100 0000111122456788888876 444 44434556789999999887655211 1
Q ss_pred eeeeEeeccccEEEEeecCCCceEEEee
Q 010784 441 TGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 441 v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
... .-+.+.-+++.+ ..|.+.+++
T Consensus 323 aaG--va~~~~gf~vss--g~G~~~~~s 346 (366)
T COG3490 323 AAG--VAAAKGGFAVSS--GQGRIIFYS 346 (366)
T ss_pred ccc--ceeccCceEEec--CCceEEecc
Confidence 112 223333344444 348888774
No 406
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=1.5 Score=38.30 Aligned_cols=154 Identities=11% Similarity=0.086 Sum_probs=91.6
Q ss_pred EeeCCcEEEeecCC-----eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceE
Q 010784 117 LLDNNDIFSTQGSS-----IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIR 191 (501)
Q Consensus 117 ~~~~~~~~~~~g~~-----d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~ 191 (501)
+|++||.+|...-. .|.|-|||...+.+.+-.+..|.-.-..+.+.+ ||+.++.+. |-|.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-------------DGrtlvvan--GGIe 184 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-------------DGRTLVVAN--GGIE 184 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-------------CCcEEEEeC--Ccee
Confidence 58899999875544 489999999977777778888888888999998 888888764 3333
Q ss_pred Ee--------------------c--CCceee--ecc--CCCCceEEEEeeecCCCCCCEEEEeeCCCcE-----EEEecc
Q 010784 192 LW--------------------W--KGSCQR--CFK--GHNGPVSTLSDKLLGDGSGKILASGGEDATV-----RLWSLS 240 (501)
Q Consensus 192 vw--------------------d--~~~~~~--~~~--~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i-----~iwd~~ 240 (501)
.- | ++..+. ++. .+.-.|..++. ..+|..++.+-..|.- .+=...
T Consensus 185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~----g~dgtvwfgcQy~G~~~d~ppLvg~~~ 260 (366)
T COG3490 185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI----GRDGTVWFGCQYRGPRNDLPPLVGHFR 260 (366)
T ss_pred cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeee----CCCCcEEEEEEeeCCCccCCcceeecc
Confidence 33 2 222221 122 23445666665 3556555544332210 000011
Q ss_pred CCCccccccceeec-------cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccc
Q 010784 241 SSGKRGQQALKATL-------YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVR 295 (501)
Q Consensus 241 ~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 295 (501)
.++ .+..+ ......|-+|+.+..++-..+|+-..+...+||..++..+.
T Consensus 261 ~g~------~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 261 KGE------PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred CCC------cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 111 11111 11234566778875556566666666778899999997644
No 407
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=2.2 Score=37.47 Aligned_cols=207 Identities=13% Similarity=0.033 Sum_probs=118.5
Q ss_pred CCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEE
Q 010784 205 HNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVR 284 (501)
Q Consensus 205 h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~ 284 (501)
-.+-+..+.++ +++++.+..+.-++|.|+.+...+ +.+..+. ..+.-.++.+ .+++...+..|.-+.
T Consensus 85 ~~~l~~Dv~vs------e~yvyvad~ssGL~IvDIS~P~sP---~~~~~ln-t~gyaygv~v---sGn~aYVadlddgfL 151 (370)
T COG5276 85 ARDLFADVRVS------EEYVYVADWSSGLRIVDISTPDSP---TLIGFLN-TDGYAYGVYV---SGNYAYVADLDDGFL 151 (370)
T ss_pred hhhhhheeEec------ccEEEEEcCCCceEEEeccCCCCc---ceecccc-CCceEEEEEe---cCCEEEEeeccCcEE
Confidence 34556677774 568888888889999999987651 1122222 2234445555 466787787676778
Q ss_pred EEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc
Q 010784 285 VWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG 364 (501)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 364 (501)
+.|+.+.+... ..-...........++.| |++-..+.
T Consensus 152 ivdvsdpssP~-----------------------------------------lagrya~~~~d~~~v~IS--Gn~AYvA~ 188 (370)
T COG5276 152 IVDVSDPSSPQ-----------------------------------------LAGRYALPGGDTHDVAIS--GNYAYVAW 188 (370)
T ss_pred EEECCCCCCce-----------------------------------------eeeeeccCCCCceeEEEe--cCeEEEEE
Confidence 88987754211 111112222223455554 55666665
Q ss_pred CCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCccee
Q 010784 365 IGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTG 442 (501)
Q Consensus 365 ~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 442 (501)
.|+ +.+-|+.+.... ..+... .....+.++..+++ .+++. .+--+.+-|..+.+....+-.-+ ......++
T Consensus 189 ~d~GL~ivDVSnp~sP---vli~~~-n~g~g~~sv~vsdnr~y~vv--y~egvlivd~s~~ssp~~~gsye-t~~p~~~s 261 (370)
T COG5276 189 RDGGLTIVDVSNPHSP---VLIGSY-NTGPGTYSVSVSDNRAYLVV--YDEGVLIVDVSGPSSPTVFGSYE-TSNPVSIS 261 (370)
T ss_pred eCCCeEEEEccCCCCC---eEEEEE-ecCCceEEEEecCCeeEEEE--cccceEEEecCCCCCceEeeccc-cCCccccc
Confidence 555 999999987653 111111 12337889999999 55554 34457788877655444442111 11112222
Q ss_pred eeEeeccccEEEEeecCCCceEEEeeccCCccceee
Q 010784 443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLK 478 (501)
Q Consensus 443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s 478 (501)
.+.-.+++...+- .+.-+-+-|++++..+.++
T Consensus 262 --~v~Vs~~~~Yvad--ga~gl~~idisnp~spfl~ 293 (370)
T COG5276 262 --TVPVSGEYAYVAD--GAKGLPIIDISNPPSPFLS 293 (370)
T ss_pred --ceecccceeeeec--cccCceeEeccCCCCCchh
Confidence 3444566666655 3466777788887776663
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.84 E-value=0.0079 Score=59.77 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=99.2
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
|..+-|-++..++..|..++.+++-.+.+ .....+.+|...+..++|...|-. .-...+|||..|++++.||.++.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~--~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVL--KLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchh--hheeeCCCCcEEEEeecCCccce
Confidence 44444556778888999999999988774 344667789999999998764432 22236789999999999999999
Q ss_pred ec---CC----ceeeeccCCC-CceEEEEeeecC-----CCCCCEEEEee-CCCcEEEEeccCCCcc--ccccceeeccC
Q 010784 193 WW---KG----SCQRCFKGHN-GPVSTLSDKLLG-----DGSGKILASGG-EDATVRLWSLSSSGKR--GQQALKATLYG 256 (501)
Q Consensus 193 wd---~~----~~~~~~~~h~-~~v~~l~~s~~~-----~~~~~~l~sg~-~dg~i~iwd~~~~~~~--~~~~~~~~~~~ 256 (501)
|. +| .|+...+.|. ++-.|.-|+-.. -+.-.++++++ .+..+++|.-..-.+. .....+.....
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p 341 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGP 341 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecC
Confidence 95 33 4555566676 444444343000 00112344443 4556888876543320 00001122223
Q ss_pred CCCceeEEEEeecCCeEEEEEeCCCeEEEEECC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTS 289 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~ 289 (501)
|.+.|+.+.....--..+++-+.++.|.+|--+
T Consensus 342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred CCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 444443322211111134455667778887543
No 409
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.78 E-value=3.5 Score=38.33 Aligned_cols=245 Identities=16% Similarity=0.039 Sum_probs=100.1
Q ss_pred CCceeeeccCCCCceEEEEeee-cCCCCCC-EEEEeeCCC--cEEEEeccCCCccccccceeeccCCC-CceeEEEEeec
Q 010784 195 KGSCQRCFKGHNGPVSTLSDKL-LGDGSGK-ILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHE-KPIKLMSVAGH 269 (501)
Q Consensus 195 ~~~~~~~~~~h~~~v~~l~~s~-~~~~~~~-~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~~ 269 (501)
+|..+..+.........+-|.- ....+|+ +|+++..|| .+.+.|+.+++ +..+.... .......+++.
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------i~QLTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE-------ITQLTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------EEE---SS-B-TTT-EE-TT
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE-------EEECccCCCCCccceEEecC
Confidence 5555555543333223232210 0025665 455555555 45666777765 33333322 22224456664
Q ss_pred CCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe-----------------------CCc
Q 010784 270 KSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS-----------------------GSS 326 (501)
Q Consensus 270 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~ 326 (501)
.+.++-......|.-.|+++.+.............. ....+..+...++.+. ...
T Consensus 92 -~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~-gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 92 -DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGY-GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp -SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEE-EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred -CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccc-cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 455554545568888999987643222211111000 0111111111111110 014
Q ss_pred EEEEEcCCCceEeeeccCCCcEEEEEEcCC-CcEEEEEcCC---cE--EEEecCCCCCCCCCCCcccccCcccCeEEEEe
Q 010784 327 VVTIDLRTMQKVMTPAICKPILHSFSIMPS-KSLICTGGIG---KA--MTWDIRRSQDAVKPQPMAELDGHVGSVTQLHM 400 (501)
Q Consensus 327 i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~d---~i--~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 400 (501)
|...|+.+++....+. -...+..+.|+|. ..+|+-|-++ .| |||-+++.... ..++..-. ....+..=-|
T Consensus 170 i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~-~~e~~gHEfw 245 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRM-EGESVGHEFW 245 (386)
T ss_dssp EEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEEEE
T ss_pred EEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc--ceeeecCC-CCcccccccc
Confidence 6777888887665555 3677889999996 4555555433 23 78877653221 11122111 1223334457
Q ss_pred cCC--eEEEE----ecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecC
Q 010784 401 DPY--KIVTG----GRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYG 459 (501)
Q Consensus 401 ~~~--~~l~~----gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 459 (501)
.|+ .+..- ++.+..|.-+|+.+++...... ..+..-+.-++||++++.=++|
T Consensus 246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-------~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-------MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-------E-SEEEEEE-TTSSEEEEEE--
T ss_pred cCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-------CCceeeeEEcCCCCEEEecCCC
Confidence 777 33322 2234467777888776543221 1123345567899988876544
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.75 E-value=2.6 Score=36.86 Aligned_cols=186 Identities=15% Similarity=0.051 Sum_probs=104.9
Q ss_pred CceeEEEEeecCCeEEEEEeCCC--eEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCC
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDS--KVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRT 334 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~ 334 (501)
.-...+.|.. ++.++-+.+.-| .|+.+|+.+++......... ......+...++.++..+ .+...+||..+
T Consensus 45 aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 45 AFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP----RYFGEGITILGDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp -EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT----T--EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred ccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc----cccceeEEEECCEEEEEEecCCeEEEEcccc
Confidence 4456788853 677778877665 79999999997654332221 112223344455555554 35789999999
Q ss_pred CceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCc-----ccCeEEEEecCCeEEEEe
Q 010784 335 MQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGH-----VGSVTQLHMDPYKIVTGG 409 (501)
Q Consensus 335 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~l~~g 409 (501)
.+.+.++.- .+.=..++. .+..++.+-+.+.|+++|..+.+.. ..+... -..++-+.+-...+.|-.
T Consensus 120 l~~~~~~~y-~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~------~~i~V~~~g~pv~~LNELE~i~G~IyANV 191 (264)
T PF05096_consen 120 LKKIGTFPY-PGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEV------RTIQVTDNGRPVSNLNELEYINGKIYANV 191 (264)
T ss_dssp TEEEEEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEE------EEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred ceEEEEEec-CCcceEEEc-CCCEEEEECCccceEEECCcccceE------EEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence 998887764 344556663 2344555555666999998875543 222211 123455666655666655
Q ss_pred cCCCcEEEEeCCCcccccccccCC----------CCCCCcceeeeEeeccccEEEEee
Q 010784 410 RDDLRINIWETDTGMLANSLLCNY----------PEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 410 s~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
=....|...|..+|++...+.... ......-.+.+++.|..+.|...|
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 455667777777777665442110 011245678999998776665554
No 411
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.61 E-value=3.3 Score=41.66 Aligned_cols=151 Identities=13% Similarity=-0.026 Sum_probs=79.8
Q ss_pred CCceEEeeCCcEEEeecC------CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee
Q 010784 112 PHDHILLDNNDIFSTQGS------SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS 185 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~------~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 185 (501)
.+...+++++|..+|.-. .|..-.+|-...+........+. ..+.-.|+| +|..+++..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWsp-------------DG~~lw~v~ 415 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSL-------------DADAVWVVV 415 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECC-------------CCCceEEEe
Confidence 478999999998887554 23333444332222333333333 377788888 666666654
Q ss_pred CC-CceEEe-----------c-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEE---eccCCCcccccc
Q 010784 186 CD-HSIRLW-----------W-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLW---SLSSSGKRGQQA 249 (501)
Q Consensus 186 ~d-g~i~vw-----------d-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iw---d~~~~~~~~~~~ 249 (501)
.. ..+++. + .+..... ...+.|..+.|| ++|..++... +|.|.+= ....+.. ...
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wS----pDG~RiA~i~-~g~v~Va~Vvr~~~G~~--~l~ 486 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLS----RDGVRAAMII-GGKVYLAVVEQTEDGQY--ALT 486 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEEC----CCCCEEEEEE-CCEEEEEEEEeCCCCce--eec
Confidence 22 112222 2 1111111 235679999998 8999888765 4777763 3222321 000
Q ss_pred ceeec-cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784 250 LKATL-YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDT 288 (501)
Q Consensus 250 ~~~~~-~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~ 288 (501)
....+ ..-...+..+.|.. ++. |+.+..++...+|.+
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~-~~~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRT-GDS-LVVGRSDPEHPVWYV 524 (591)
T ss_pred ccEEeecccCCccccceEec-CCE-EEEEecCCCCceEEE
Confidence 11112 22233457888985 555 445555444445543
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.58 E-value=3.4 Score=37.37 Aligned_cols=179 Identities=11% Similarity=0.118 Sum_probs=85.3
Q ss_pred eeCCCceEEec-CCceee-eccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 184 SSCDHSIRLWW-KGSCQR-CFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 184 ~~~dg~i~vwd-~~~~~~-~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
++..|.|..=. -++.-+ ....-.+.+..+.-+ ++|.++++++......-||-.... -....+.....|
T Consensus 120 ~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~----~dG~~vavs~~G~~~~s~~~G~~~------w~~~~r~~~~ri 189 (302)
T PF14870_consen 120 AGDRGAIYRTTDGGKTWQAVVSETSGSINDITRS----SDGRYVAVSSRGNFYSSWDPGQTT------WQPHNRNSSRRI 189 (302)
T ss_dssp EETT--EEEESSTTSSEEEEE-S----EEEEEE-----TTS-EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-E
T ss_pred EcCCCcEEEeCCCCCCeeEcccCCcceeEeEEEC----CCCcEEEEECcccEEEEecCCCcc------ceEEccCcccee
Confidence 34456554443 333222 223445677777765 889988888766566677765432 122233356789
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeee
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTP 341 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 341 (501)
..+.|.+ ++.+.+ ....|.|++=+...... -|. +.+...
T Consensus 190 q~~gf~~-~~~lw~-~~~Gg~~~~s~~~~~~~-----------------------------------~w~----~~~~~~ 228 (302)
T PF14870_consen 190 QSMGFSP-DGNLWM-LARGGQIQFSDDPDDGE-----------------------------------TWS----EPIIPI 228 (302)
T ss_dssp EEEEE-T-TS-EEE-EETTTEEEEEE-TTEEE-----------------------------------EE-------B-TT
T ss_pred hhceecC-CCCEEE-EeCCcEEEEccCCCCcc-----------------------------------ccc----cccCCc
Confidence 9999997 555544 44888888877221100 000 000011
Q ss_pred ccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEE
Q 010784 342 AICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIW 418 (501)
Q Consensus 342 ~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iw 418 (501)
....-.+..+++.+++...++|+.+.+ +.....++. .+.......-...++.+.|.+. +-++.| .+|.|.-|
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGkt---W~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKT---WQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS----EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCcc---ceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 112344789999999999998888763 233333322 1111222222445778887655 777776 88887655
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=1.8 Score=35.94 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=93.0
Q ss_pred CCCCEEEEeeC--CCcEEEEeccCCCccccccceeeccC---CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784 220 GSGKILASGGE--DATVRLWSLSSSGKRGQQALKATLYG---HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294 (501)
Q Consensus 220 ~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 294 (501)
.+|.++.+.+. ...|++||+.+++.... ..+.. ....++. . ......-.=.+|.-..+|.++.
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s----~~l~~~~~FgEGit~---~--gd~~y~LTw~egvaf~~d~~t~--- 121 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFS----EKLAPDTVFGEGITK---L--GDYFYQLTWKEGVAFKYDADTL--- 121 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEE----eecCCccccccceee---c--cceEEEEEeccceeEEEChHHh---
Confidence 35666666654 34799999998764111 11110 1112221 1 2223333456788888998887
Q ss_pred cceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeecc--CC---CcEEEEEEcCCCcEEEEEcCCc-
Q 010784 295 RSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAI--CK---PILHSFSIMPSKSLICTGGIGK- 367 (501)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~--~~---~~v~~v~~~~~~~~l~~~~~d~- 367 (501)
++......++.-+.+..+...+++..|+ .++.-|.++.....+... .. ..++.+.|- +|.+.|-.-...
T Consensus 122 ---~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~ 197 (262)
T COG3823 122 ---EELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTR 197 (262)
T ss_pred ---hhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecc
Confidence 4455557788888888888887777776 677767766544332221 11 112222222 344443332222
Q ss_pred EEEEecCCCCCCCC------CCCcccccCcccCeEEEEecCC--eEEEEe
Q 010784 368 AMTWDIRRSQDAVK------PQPMAELDGHVGSVTQLHMDPY--KIVTGG 409 (501)
Q Consensus 368 i~iwd~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~~--~~l~~g 409 (501)
|...|..+++.+.- ......-..|.+..+.+++.|. +++++|
T Consensus 198 I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 198 IARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33333333332100 1112223345667889999988 888887
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=94.47 E-value=4.8 Score=39.61 Aligned_cols=183 Identities=11% Similarity=-0.005 Sum_probs=84.7
Q ss_pred CCCEEEEeeCCC-----cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC--CeEEEEECCCCcc
Q 010784 221 SGKILASGGEDA-----TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD--SKVRVWDTSTSSA 293 (501)
Q Consensus 221 ~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d--g~v~vwd~~~~~~ 293 (501)
++.+++.|+.++ .+..||..++.- ..+..+....... +++.. ++.+.+.|+.+ ..+..||..+.+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W----~~~~~m~~~r~~~-~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW----IPIPPMNSPRLYA-SGVPA--NNKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEE----EECCCCCchhhcc-eEEEE--CCEEEEECCcCCCCceEEEECCCCeE
Confidence 455667777543 466677766431 1122222111111 22222 67777777754 3577888765543
Q ss_pred ccceecccceecCCCceeeecCCCeEEEEeC-----CcEEEEEcCCCceEee--eccCCCcEEEEEEcCCCcEEEEEcCC
Q 010784 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASG-----SSVVTIDLRTMQKVMT--PAICKPILHSFSIMPSKSLICTGGIG 366 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d 366 (501)
.. ...........+.....+.+++..| ..+..||.++.+-... +....... ++ ..-++++.+.|+
T Consensus 344 ~~----~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG-- 415 (480)
T PHA02790 344 VN----MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR-- 415 (480)
T ss_pred EE----CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC--
Confidence 21 1111111112233334455555544 2466788776543321 11111111 12 223677777764
Q ss_pred cEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCC-----CcEEEEeCCCc
Q 010784 367 KAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDD-----LRINIWETDTG 423 (501)
Q Consensus 367 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~d-----g~i~iwd~~~~ 423 (501)
.+.+||..+.+ ...+..+...... .+++...+++.+.|+.+ ..+..||..++
T Consensus 416 ~~e~ydp~~~~----W~~~~~m~~~r~~-~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 NAEFYCESSNT----WTLIDDPIYPRDN-PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ceEEecCCCCc----EeEcCCCCCCccc-cEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 26678887643 2222222211112 23444455666666544 24666666544
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.44 E-value=2.9 Score=42.29 Aligned_cols=149 Identities=9% Similarity=0.051 Sum_probs=88.3
Q ss_pred CCeEEEEeCCcEEEEEcCCCceEe------eec----------------cCCCcEEEEEEcC--CCcEEEEEcCCc-EEE
Q 010784 316 ESMLYIASGSSVVTIDLRTMQKVM------TPA----------------ICKPILHSFSIMP--SKSLICTGGIGK-AMT 370 (501)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~~~~~~------~~~----------------~~~~~v~~v~~~~--~~~~l~~~~~d~-i~i 370 (501)
.+.+++|.++.|.+|+........ .+. .....|+.|.... +...|+.+.+|| |.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 455777788888888775432211 000 0123344444332 456788888888 999
Q ss_pred EecCCCC--------C------CCCCCCcccccCcccCeEEEEec--CC-eEEEEecCCCcEEEEeCCCcccccccccCC
Q 010784 371 WDIRRSQ--------D------AVKPQPMAELDGHVGSVTQLHMD--PY-KIVTGGRDDLRINIWETDTGMLANSLLCNY 433 (501)
Q Consensus 371 wd~~~~~--------~------~~~~~~~~~~~~h~~~v~~l~~~--~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~ 433 (501)
|.+..-. . ....+|...+.. ...+++++++ .. +++|.++....|.||-.......... ..
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~--~~ 205 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH--VP 205 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc--cc
Confidence 9763210 0 000122233332 3478899998 66 99999888888988876542111111 00
Q ss_pred CCCCCcceeeeEeeccc-----c-EEEEeecCCCceEEEeec
Q 010784 434 PEEADISTGCSAMAVSG-----C-RIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 434 ~~~~~~~v~~~~~s~~g-----~-~l~s~~~d~~g~i~~w~~ 469 (501)
...+...|.+++|-++. . +|++++ =.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 12356778999998754 2 666676 4599999888
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=94.40 E-value=4.7 Score=39.68 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=68.7
Q ss_pred CCCEEEEeeCCC--cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCC---eEEEEECCCCcccc
Q 010784 221 SGKILASGGEDA--TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDS---KVRVWDTSTSSAVR 295 (501)
Q Consensus 221 ~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg---~v~vwd~~~~~~~~ 295 (501)
++.+.+.|+.++ .+..||..++. +..+..+....... +++.. ++.+.+.|+.++ .+..||.++.+...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~----W~~~~~l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~ 390 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAA----WVNMPSLLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQF 390 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCe----EEECCCCCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEe
Confidence 567777887643 57778765543 12222222111111 22222 677778887653 46778887765422
Q ss_pred ceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe--eeccCCCcEEEEEEcCCCcEEEEEcCC-----c-
Q 010784 296 SSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM--TPAICKPILHSFSIMPSKSLICTGGIG-----K- 367 (501)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----~- 367 (501)
. .....+....++...++.+++ .|+.+..||.++.+-.. .+.........+. -++++.+.|+.+ .
T Consensus 391 ~----~~m~~~r~~~~~~~~~~~IYv-~GG~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ 463 (480)
T PHA02790 391 G----PSTYYPHYKSCALVFGRRLFL-VGRNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDT 463 (480)
T ss_pred C----CCCCCccccceEEEECCEEEE-ECCceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccce
Confidence 1 111111111122223333443 34567788887654432 2221112222222 267788887732 2
Q ss_pred EEEEecCCC
Q 010784 368 AMTWDIRRS 376 (501)
Q Consensus 368 i~iwd~~~~ 376 (501)
+..||..+.
T Consensus 464 ve~Yd~~~~ 472 (480)
T PHA02790 464 IEVYNNRTY 472 (480)
T ss_pred EEEEECCCC
Confidence 667776654
No 417
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.40 E-value=5.1 Score=38.61 Aligned_cols=231 Identities=18% Similarity=0.117 Sum_probs=111.6
Q ss_pred cCcEEEEe-eCCC----ceEEec--CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC-----------cEEEEe
Q 010784 177 TENVLVTS-SCDH----SIRLWW--KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA-----------TVRLWS 238 (501)
Q Consensus 177 ~~~~l~s~-~~dg----~i~vwd--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg-----------~i~iwd 238 (501)
+|+++|.+ +..| ++++.| +++.+...- .......+.|. ++++.|+....+. .|..|.
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~----~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWS----DDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEEC----TTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEe----CCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 78888754 3333 488888 554443211 11122238886 6766665544332 377888
Q ss_pred ccCCCccccccceeeccCCCCc--eeEEEEeecCCeEEEE-EeCC---CeEEEEECCCCc-cccceecccceecCCCcee
Q 010784 239 LSSSGKRGQQALKATLYGHEKP--IKLMSVAGHKSFLLVT-ISKD---SKVRVWDTSTSS-AVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~~~l~s-~s~d---g~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~ 311 (501)
+.+... .-...+...... ...+..+. ++++++. .... ..+.+.|+..+. .......+ .....+....
T Consensus 209 ~gt~~~----~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l-~~~~~~~~~~ 282 (414)
T PF02897_consen 209 LGTPQS----EDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL-SPREDGVEYY 282 (414)
T ss_dssp TTS-GG----G-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE-EESSSS-EEE
T ss_pred CCCChH----hCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE-eCCCCceEEE
Confidence 877643 112233333332 45677776 5555544 3332 347788887641 00000111 1122333344
Q ss_pred eecCCCeEEEEeCC-----cEEEEEcCCCce---EeeeccCCC--cEEEEEEcCCCcEEEEEcCCc---EEEEecC-CCC
Q 010784 312 MKCHESMLYIASGS-----SVVTIDLRTMQK---VMTPAICKP--ILHSFSIMPSKSLICTGGIGK---AMTWDIR-RSQ 377 (501)
Q Consensus 312 ~~~~~~~~~~~~~~-----~i~~~d~~~~~~---~~~~~~~~~--~v~~v~~~~~~~~l~~~~~d~---i~iwd~~-~~~ 377 (501)
+...++.+++.+.. .+...++..... ...+..+.. .+..+... .+.+++....++ |+++++. ...
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCCCcE
Confidence 44446666665542 577777776653 224444444 45555553 233444444443 9999999 432
Q ss_pred CCCCCCCcccccCcccCeEEEEecCC--eEEEEe-cC--CCcEEEEeCCCccc
Q 010784 378 DAVKPQPMAELDGHVGSVTQLHMDPY--KIVTGG-RD--DLRINIWETDTGML 425 (501)
Q Consensus 378 ~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~~g-s~--dg~i~iwd~~~~~~ 425 (501)
.. ...+. -.+.|..+...++ .+.+.- |. -+++..||+.+++.
T Consensus 362 ~~-----~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 362 SR-----EIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EE-----EEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred Ee-----eecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 21 11111 1334555554444 333332 22 35677888877764
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.09 E-value=5.5 Score=37.82 Aligned_cols=84 Identities=7% Similarity=0.013 Sum_probs=53.7
Q ss_pred ccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeecc--------------ccEEEEe
Q 010784 392 VGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVS--------------GCRIVTA 456 (501)
Q Consensus 392 ~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------g~~l~s~ 456 (501)
...+.+++.+|. +++++...=|+|.++|+.++..++.+++-. ...-+.+....-... ..+|+.=
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 345788999999 888887778999999999999888875322 111111111111000 1233332
Q ss_pred ecCCCceEEEeeccCCcccee
Q 010784 457 SYGEPGLLQFRDFSNATCPVL 477 (501)
Q Consensus 457 ~~d~~g~i~~w~~~~~~~~~~ 477 (501)
.. ..|.|.||.+..+.+..+
T Consensus 386 ap-rRg~lEvW~~~~g~Rv~a 405 (415)
T PF14655_consen 386 AP-RRGILEVWSMRQGPRVAA 405 (415)
T ss_pred ec-cCCeEEEEecCCCCEEEE
Confidence 22 679999999999887554
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.08 E-value=0.2 Score=29.59 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=27.6
Q ss_pred CceeEEEEeecCC--eEEEEEeCCCeEEEEECCCC
Q 010784 259 KPIKLMSVAGHKS--FLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 259 ~~v~~l~~~~~~~--~~l~s~s~dg~v~vwd~~~~ 291 (501)
+.|.+++|+|..+ .+|+.+-.-|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998655 78888888899999999963
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.02 E-value=1.2 Score=44.48 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=76.8
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecc-cCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLS-DHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.-..++-+.-+.-++..++.+....+.|||...+ .....-. ...+.|.++.|... |+++.+++.|..
T Consensus 28 ~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~-~lE~~~~f~~~~~I~dLDWtst-----------~d~qsiLaVGf~ 95 (631)
T PF12234_consen 28 GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSG-VLEYEESFSEDDPIRDLDWTST-----------PDGQSILAVGFP 95 (631)
T ss_pred CCCCcceEeecccCcEEEEECCCCEEEEEEcCCc-EEEEeeeecCCCceeeceeeec-----------CCCCEEEEEEcC
Confidence 3444666666677777777777889999999875 2221111 45788999999873 489999999999
Q ss_pred CceEEecC--------C---ceeee--ccCCC-CceEEEEeeecCCCCCCEEEEeeCCCcEEEEecc
Q 010784 188 HSIRLWWK--------G---SCQRC--FKGHN-GPVSTLSDKLLGDGSGKILASGGEDATVRLWSLS 240 (501)
Q Consensus 188 g~i~vwd~--------~---~~~~~--~~~h~-~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~ 240 (501)
+.|.++.. + ..++. +..|+ .+|.+..|. ++|.+++.++ ..+.|+|-.
T Consensus 96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl----~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL----KDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe----cCCeEEEEeC--CEEEEECCC
Confidence 99999841 1 12222 23444 689999996 6665555433 567887643
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.62 E-value=10 Score=39.41 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=104.3
Q ss_pred CcEEEEeeCCCceEEec--CCceeeeccCCCC--------ceEEEEeeec------------CCCCCCEEEEeeCCCcEE
Q 010784 178 ENVLVTSSCDHSIRLWW--KGSCQRCFKGHNG--------PVSTLSDKLL------------GDGSGKILASGGEDATVR 235 (501)
Q Consensus 178 ~~~l~s~~~dg~i~vwd--~~~~~~~~~~h~~--------~v~~l~~s~~------------~~~~~~~l~sg~~dg~i~ 235 (501)
+..+..++.++.|.-.| +|+.+-.+..... ....+.+.-. +...+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56677777778777777 6666554432111 0122333100 012345788888999999
Q ss_pred EEeccCCCccccccceeeccCCCCcee-------------EEEEeec-CCeEEEEEeC----------CCeEEEEECCCC
Q 010784 236 LWSLSSSGKRGQQALKATLYGHEKPIK-------------LMSVAGH-KSFLLVTISK----------DSKVRVWDTSTS 291 (501)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~~~~~~v~-------------~l~~~~~-~~~~l~s~s~----------dg~v~vwd~~~~ 291 (501)
-.|.++++. ...+. ..+.|. .+.-.|- .+..++.|+. +|.|+-+|.+++
T Consensus 274 ALDA~TGk~------~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG 346 (764)
T TIGR03074 274 ALDADTGKL------CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG 346 (764)
T ss_pred EEECCCCCE------EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence 999998874 22221 111110 0000010 1234555542 688999999999
Q ss_pred ccccceecccce----ecCC-----------CceeeecCCCeEEEEeC-------------------CcEEEEEcCCCce
Q 010784 292 SAVRSSCCVGMT----SVPG-----------VPVDMKCHESMLYIASG-------------------SSVVTIDLRTMQK 337 (501)
Q Consensus 292 ~~~~~~~~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~-------------------~~i~~~d~~~~~~ 337 (501)
+.+-........ ...+ .....+...+.+++.++ +.+.-.|.++++.
T Consensus 347 kl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 347 ALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred cEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence 876544321100 0011 11122222233444332 2577789999999
Q ss_pred EeeeccCCCc---------EEEEEEcC-CCc---EEEEEcCCc-EEEEecCCCCCC
Q 010784 338 VMTPAICKPI---------LHSFSIMP-SKS---LICTGGIGK-AMTWDIRRSQDA 379 (501)
Q Consensus 338 ~~~~~~~~~~---------v~~v~~~~-~~~---~l~~~~~d~-i~iwd~~~~~~~ 379 (501)
...++..... ..-+.+.. +|+ .++.++.++ +.+.|.++++.+
T Consensus 427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 8777652111 11122222 553 788888888 999999988765
No 422
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.23 E-value=0.078 Score=48.81 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHhcC-ChhhhHHHHhhChhHHHHcC
Q 010784 21 ADLNEDAVAHCALNL-SLQDISNMAMSCKLFKHVAY 55 (501)
Q Consensus 21 ~~Lp~e~~~~i~~~L-~~~~l~~~~~vc~~~~~~~~ 55 (501)
.+||+|++..|...| ..-|+.+++.||+.||..+.
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 479999999999999 66699999999999999874
No 423
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.13 E-value=1.3 Score=41.32 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=92.6
Q ss_pred eeecCCCeEEEEeCCcEEEEEcCCCceEe-eec-cCCC----cEE-EEEEcCCCcEEEEEcCCc-EEEE-ecCCCCCCCC
Q 010784 311 DMKCHESMLYIASGSSVVTIDLRTMQKVM-TPA-ICKP----ILH-SFSIMPSKSLICTGGIGK-AMTW-DIRRSQDAVK 381 (501)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~-~~~~----~v~-~v~~~~~~~~l~~~~~d~-i~iw-d~~~~~~~~~ 381 (501)
-+..++..+++.+++++.++++.+..... ++. ...+ .|+ ++..-..|.-+.+++.|+ |.-| |.+..... .
T Consensus 227 lL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p-~ 305 (733)
T COG4590 227 LLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP-H 305 (733)
T ss_pred EECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC-c
Confidence 34566777888899999999887654321 111 1111 121 122223566677777777 7666 66654321 1
Q ss_pred CCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCC
Q 010784 382 PQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGE 460 (501)
Q Consensus 382 ~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 460 (501)
...++.++-....+..+.-..+ +.+++-+.+|++.++...+.+.+..-. --..+.-+++||.+.++++- +
T Consensus 306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~------~~~~~~~~~~Sp~~~~Ll~e---~ 376 (733)
T COG4590 306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER------AYQAPQLVAMSPNQAYLLSE---D 376 (733)
T ss_pred ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh------hhcCcceeeeCcccchheee---c
Confidence 2223333333344555544445 777777899999988765444332211 12356678999999999986 5
Q ss_pred CceEEEeeccCCccce
Q 010784 461 PGLLQFRDFSNATCPV 476 (501)
Q Consensus 461 ~g~i~~w~~~~~~~~~ 476 (501)
.|.|+++.+++...-+
T Consensus 377 ~gki~~~~l~Nr~Pei 392 (733)
T COG4590 377 QGKIRLAQLENRNPEI 392 (733)
T ss_pred CCceEEEEecCCCCCc
Confidence 5899999988766543
No 424
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.03 E-value=11 Score=38.00 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=92.2
Q ss_pred CCceEEecCCc--eeeeccCCCCceEEEEeeecCCCCCCEEEEee------CCCcEEEEeccCCCccccccceeeccCCC
Q 010784 187 DHSIRLWWKGS--CQRCFKGHNGPVSTLSDKLLGDGSGKILASGG------EDATVRLWSLSSSGKRGQQALKATLYGHE 258 (501)
Q Consensus 187 dg~i~vwd~~~--~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 258 (501)
+|.+.-.+.+. .+.-..+....+.+.+++ ++|+.++... .|+.-.+|-...+.. ......+.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiS----pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----~~~lt~g~- 397 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALS----RSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----AVQVLEGH- 397 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceEC----CCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----ceeeecCC-
Confidence 66665554221 122222333456777776 7888776654 244444554332322 11222222
Q ss_pred CceeEEEEeecCCeEEEEEeCCCe-EEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 259 KPIKLMSVAGHKSFLLVTISKDSK-VRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 259 ~~v~~l~~~~~~~~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
..+.-.|+| ++..+++.+.... +++.+-.. .+.+.+.++..++.
T Consensus 398 -~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~---------------------------------~gql~~~~vd~ge~ 442 (591)
T PRK13616 398 -SLTRPSWSL-DADAVWVVVDGNTVVRVIRDPA---------------------------------TGQLARTPVDASAV 442 (591)
T ss_pred -CCCCceECC-CCCceEEEecCcceEEEeccCC---------------------------------CceEEEEeccCchh
Confidence 256678987 5566666653322 22222111 01233334433333
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEE---EecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecCC
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGGIGKAMT---WDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDD 412 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~i---wd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~d 412 (501)
.. ...+.|.++.|||||..++....+.|.+ -....+... ......+ .+-...+.++.|.++ .+++. ..+
T Consensus 443 ~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~--l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~~~ 516 (591)
T PRK13616 443 AS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYA--LTNPREVGPGLGDTAVSLDWRTGDSLVVG-RSD 516 (591)
T ss_pred hh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCcee--ecccEEeecccCCccccceEecCCEEEEE-ecC
Confidence 22 2356799999999999988877655666 443334311 1111122 222334688999999 66654 344
Q ss_pred CcEEEEeC
Q 010784 413 LRINIWET 420 (501)
Q Consensus 413 g~i~iwd~ 420 (501)
+...+|.+
T Consensus 517 ~~~~v~~v 524 (591)
T PRK13616 517 PEHPVWYV 524 (591)
T ss_pred CCCceEEE
Confidence 44455554
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.02 E-value=3.1 Score=39.61 Aligned_cols=137 Identities=10% Similarity=0.064 Sum_probs=84.3
Q ss_pred cEEEEEcCCCceEeeeccCCCcEEEEEEcCC--------CcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEE
Q 010784 326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPS--------KSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQ 397 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~--------~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~ 397 (501)
.++-.|++.|+.+..+..|... -+.+.|+ .+.|+.-|+.+|.-.|.+.............+.+ .....+
T Consensus 491 kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t-Kn~Fss 567 (776)
T COG5167 491 KLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT-KNKFSS 567 (776)
T ss_pred cceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc-cccccc
Confidence 6777899999999888887665 4667774 3355555555566666654321100000011111 122333
Q ss_pred EEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 398 LHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 398 l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
..-....++|.+|..|.|++||-- |....+.. .+-...|..+..+.+|++|++.+. ..+.+-|+....
T Consensus 568 ~~tTesGyIa~as~kGDirLyDRi-g~rAKtal----P~lG~aIk~idvta~Gk~ilaTCk---~yllL~d~~ik~ 635 (776)
T COG5167 568 GMTTESGYIAAASRKGDIRLYDRI-GKRAKTAL----PGLGDAIKHIDVTANGKHILATCK---NYLLLTDVPIKY 635 (776)
T ss_pred cccccCceEEEecCCCceeeehhh-cchhhhcC----cccccceeeeEeecCCcEEEEeec---ceEEEEeccccc
Confidence 333334788888899999999954 33333332 344678999999999999888764 477777765433
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.87 E-value=1.8 Score=43.18 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=72.6
Q ss_pred CcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEec--CC--eEEEEecCCCcEEEEeC
Q 010784 346 PILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMD--PY--KIVTGGRDDLRINIWET 420 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~--~~l~~gs~dg~i~iwd~ 420 (501)
....-+.-+.-++..++.+++. +.|||.+.+... .-..+ ...+.|..+.|. |+ .+++.| ..+.|.++.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE----~~~~f-~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE----YEESF-SEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE----Eeeee-cCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEc
Confidence 3444455555566666655666 999999987632 11233 346789999985 44 556655 8889998854
Q ss_pred C---------CcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCC
Q 010784 421 D---------TGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNA 472 (501)
Q Consensus 421 ~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~ 472 (501)
. +...+..+.... ....+|.+..|.++|.+++.+| +.+.+++-..+
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~--~T~h~Igds~Wl~~G~LvV~sG----Nqlfv~dk~~~ 158 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISS--HTPHPIGDSIWLKDGTLVVGSG----NQLFVFDKWLD 158 (631)
T ss_pred cchhhhcCCcccceeEEEEeec--CCCCCccceeEecCCeEEEEeC----CEEEEECCCcC
Confidence 2 122333332211 1235788999999998888776 67888874433
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.74 E-value=8.3 Score=35.77 Aligned_cols=77 Identities=12% Similarity=-0.032 Sum_probs=43.2
Q ss_pred cccccCcccCeEEEEecC-------C-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEe
Q 010784 385 MAELDGHVGSVTQLHMDP-------Y-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~-------~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 456 (501)
+..+..| ..+..+.|.. . .++++.-..+.|....+.++..+....... ......+..+++.|||.+.++.
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEETTSEEEEEE
T ss_pred ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEcCCCeEEEEE
Confidence 3334433 4566666642 2 577776566778888776443221111000 2334578999999999998887
Q ss_pred ecCCCceEE
Q 010784 457 SYGEPGLLQ 465 (501)
Q Consensus 457 ~~d~~g~i~ 465 (501)
. .+|.|+
T Consensus 324 d--~~G~iy 330 (331)
T PF07995_consen 324 D--SDGKIY 330 (331)
T ss_dssp ---TTTTEE
T ss_pred C--CCCeEe
Confidence 6 557764
No 428
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.73 E-value=9.6 Score=37.43 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=70.8
Q ss_pred CCcEEEeec---CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-C
Q 010784 120 NNDIFSTQG---SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-K 195 (501)
Q Consensus 120 ~~~~~~~~g---~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~ 195 (501)
.++.+++++ .......+.|.. +.++..+.........+...+ +|++++..+ +.+..+| .
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~--G~Vrw~~~~~~~~~~~~~~l~-------------nG~ll~~~~--~~~~e~D~~ 175 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNN--GDVRWYLPLDSGSDNSFKQLP-------------NGNLLIGSG--NRLYEIDLL 175 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETT--S-EEEEE-GGGT--SSEEE-T-------------TS-EEEEEB--TEEEEE-TT
T ss_pred CCcEEEEeCCCCCCCceEEEECCC--ccEEEEEccCccccceeeEcC-------------CCCEEEecC--CceEEEcCC
Confidence 467788877 556667777766 344444432222222255555 777777655 7788888 7
Q ss_pred CceeeeccCCCCc---eEEEEeeecCCCCCCEEEEee--------------CCC---------cEEEEeccCCCcccccc
Q 010784 196 GSCQRCFKGHNGP---VSTLSDKLLGDGSGKILASGG--------------EDA---------TVRLWSLSSSGKRGQQA 249 (501)
Q Consensus 196 ~~~~~~~~~h~~~---v~~l~~s~~~~~~~~~l~sg~--------------~dg---------~i~iwd~~~~~~~~~~~ 249 (501)
|+.+..+....+. =..+... ++|++|+.+. .|. .+..||+..--......
T Consensus 176 G~v~~~~~l~~~~~~~HHD~~~l----~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 176 GKVIWEYDLPGGYYDFHHDIDEL----PNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp --EEEEEE--TTEE-B-S-EEE-----TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--T
T ss_pred CCEEEeeecCCcccccccccEEC----CCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCccccc
Confidence 7766554322211 1233332 7788887776 222 12334443211000000
Q ss_pred c-----eeecc---CCC--CceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccc
Q 010784 250 L-----KATLY---GHE--KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAV 294 (501)
Q Consensus 250 ~-----~~~~~---~~~--~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 294 (501)
. ..... ... --+.++.+.+.++.+++++-.-..|...|.++++..
T Consensus 252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 0 00000 000 136788898767777777766668888898777653
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.67 E-value=14 Score=38.42 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=82.6
Q ss_pred CeEEEEEeCCCeEEEEECCCCccccceeccccee-------cC-C---CceeeecCCCeEEEEe-----------CCcEE
Q 010784 271 SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTS-------VP-G---VPVDMKCHESMLYIAS-----------GSSVV 328 (501)
Q Consensus 271 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-------~~-~---~~~~~~~~~~~~~~~~-----------~~~i~ 328 (501)
+..++.++.|+.+.-.|.++++....+....... .. + .........+.+++.. .+.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 3477788899999999999998764432211110 00 0 0001112234444442 24689
Q ss_pred EEEcCCCceEeeeccC---------CCc--------E-EEEEEcCCCcEEEEEcC------------------Cc-EEEE
Q 010784 329 TIDLRTMQKVMTPAIC---------KPI--------L-HSFSIMPSKSLICTGGI------------------GK-AMTW 371 (501)
Q Consensus 329 ~~d~~~~~~~~~~~~~---------~~~--------v-~~v~~~~~~~~l~~~~~------------------d~-i~iw 371 (501)
-+|.++++.+..+..- .+. + ..++++++..+++.+.. .. |.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 9999999998766421 011 1 22344444334333221 12 5555
Q ss_pred ecCCCCCCCCCCCcccccC--cc--------cC-eEEEEe-cCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784 372 DIRRSQDAVKPQPMAELDG--HV--------GS-VTQLHM-DPY--KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 372 d~~~~~~~~~~~~~~~~~~--h~--------~~-v~~l~~-~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
|.++++.. -.++. |. .+ +..+.. ... ..++.++.+|.+.+.|-++|+.+...
T Consensus 420 D~~TGk~~------W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 420 DATTGKER------WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eCCCCceE------EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 66665543 22222 11 11 122322 221 47888889999999999999887654
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.55 E-value=4.9 Score=33.88 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=67.9
Q ss_pred CceeeecCC-CeEEEEe-CCcEEEEEcC--CCceEeeeccCCCcEEEEEEcCCCcEEEEEcCC-------cEEEE-ecCC
Q 010784 308 VPVDMKCHE-SMLYIAS-GSSVVTIDLR--TMQKVMTPAICKPILHSFSIMPSKSLICTGGIG-------KAMTW-DIRR 375 (501)
Q Consensus 308 ~~~~~~~~~-~~~~~~~-~~~i~~~d~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------~i~iw-d~~~ 375 (501)
.+..+...+ +.+++++ +..|.+|++. ..+....+.. -+.|..+.++..|+++++--.+ .+|+| +.+.
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 444555555 6777754 5599999988 3445566765 4889999999999999987522 24664 2222
Q ss_pred CCCCCCCCCcc-cccC---------------------cccCeEEEEecCC--eEEEEecCCCcEEEEeCCCc
Q 010784 376 SQDAVKPQPMA-ELDG---------------------HVGSVTQLHMDPY--KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 376 ~~~~~~~~~~~-~~~~---------------------h~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~ 423 (501)
.+.. ..++. .+-| -..++.+++..|- .++++ .++++.+|.+...
T Consensus 98 ~~~~--~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 98 QKEE--NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKYQ 165 (215)
T ss_pred hccc--CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEEE
Confidence 1110 00111 1111 1346678888887 66665 4678999987654
No 431
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.96 E-value=12 Score=35.76 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=85.0
Q ss_pred CcEEEeecCCeeeEEEEeccccc-ccceec--ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSES-YYRATL--SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW--- 194 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--- 194 (501)
+...+++|+..|.++|++...+. +....+ ..-..+|..++.-.... ..+...||. -.-..+.||.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s--------~~~~~~LaV-LhP~kl~vY~v~~ 106 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVS--------GSEDLQLAV-LHPRKLSVYSVSL 106 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccC--------CCCcceEEE-ecCCEEEEEEEEe
Confidence 45789999999999999986532 111111 23356788777643100 002233333 4456666775
Q ss_pred -CCc-------eeeeccCCC--CceEEEEeeecCCCC-CCEEEEeeCCCcEEEEeccCCCccccccceeecc--CCCCce
Q 010784 195 -KGS-------CQRCFKGHN--GPVSTLSDKLLGDGS-GKILASGGEDATVRLWSLSSSGKRGQQALKATLY--GHEKPI 261 (501)
Q Consensus 195 -~~~-------~~~~~~~h~--~~v~~l~~s~~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v 261 (501)
.+. .+.....|. .....++.-+..... ..+++.-+.||.+.+++-+... ....+. -..++
T Consensus 107 ~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~------f~~~lp~~llPgP- 179 (418)
T PF14727_consen 107 VDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA------FSRFLPDFLLPGP- 179 (418)
T ss_pred cCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE------EEEEcCCCCCCcC-
Confidence 111 112222232 223344444444444 5688888999999999987643 122222 23444
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEEC
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDT 288 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~ 288 (501)
+.+.+ ..+.|++++.+..+.-|..
T Consensus 180 --l~Y~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 180 --LCYCP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred --eEEee-cCCEEEEecCceeEEEecH
Confidence 46665 4557888888888888765
No 432
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.79 E-value=11 Score=34.92 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=50.8
Q ss_pred CCeEEEEEeCC-----CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-------cEEEEEcCCCce
Q 010784 270 KSFLLVTISKD-----SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-------SVVTIDLRTMQK 337 (501)
Q Consensus 270 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~ 337 (501)
++.+++.|+.+ ..+..+|+.+.+................-.+.....+.+++..|. .+..||+.+.+-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 45677777754 346677776654210001111111111112223334555555442 578888876543
Q ss_pred Ee--eeccCCCcEEEEEEcCCCcEEEEEcCCc-----EEEEecCCCC
Q 010784 338 VM--TPAICKPILHSFSIMPSKSLICTGGIGK-----AMTWDIRRSQ 377 (501)
Q Consensus 338 ~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d~-----i~iwd~~~~~ 377 (501)
.. .+... ......+...++++++.|+.++ +.+||..+.+
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 22 12211 1112222233677777777432 5678887654
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=12 Score=35.24 Aligned_cols=118 Identities=8% Similarity=0.129 Sum_probs=76.0
Q ss_pred ccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCc---e--eeeccCCCCceEEEEeeecCCCCCC
Q 010784 150 SDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGS---C--QRCFKGHNGPVSTLSDKLLGDGSGK 223 (501)
Q Consensus 150 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~---~--~~~~~~h~~~v~~l~~s~~~~~~~~ 223 (501)
....++|.++.||+ |++.+|.--.|.+|.+.+ .+. . ..+.+..+..|....|+ +..
T Consensus 63 m~d~G~I~SIkFSl-------------DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-----~s~ 124 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSL-------------DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-----SST 124 (657)
T ss_pred ecCCCceeEEEecc-------------CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-----cCe
Confidence 34556899999998 899999999999999998 221 1 22334445678899996 335
Q ss_pred EEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEe-CCCeEEEEECCCC
Q 010784 224 ILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTIS-KDSKVRVWDTSTS 291 (501)
Q Consensus 224 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s-~dg~v~vwd~~~~ 291 (501)
-++.-... -+-+|....... .+...+.|...|.-..|.+...-.+++.+ ..+++.=+-++++
T Consensus 125 e~A~i~~~-G~e~y~v~pekr-----slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 125 EIAFITDQ-GIEFYQVLPEKR-----SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eEEEEecC-CeEEEEEchhhh-----hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 55554443 467777766543 46667788888988888874443344433 3333333444433
No 434
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.74 E-value=19 Score=35.82 Aligned_cols=261 Identities=11% Similarity=0.062 Sum_probs=115.7
Q ss_pred eeCCcEEEeecCCeeeEEEEecccccc-cceecccC-CcceeEEEeeccCcCcccccCCCCcC-cEEEEeeCCCceEEe-
Q 010784 118 LDNNDIFSTQGSSIQNIKIDNFLSESY-YRATLSDH-KARITCMRLFPLHETSLFRSEPQRTE-NVLVTSSCDHSIRLW- 193 (501)
Q Consensus 118 ~~~~~~~~~~g~~d~~i~vw~~~~~~~-~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~vw- 193 (501)
...++..+.-+..+|.+..-.+..... .....-+. ....+++.+.. +| .+|+.|+.-|.=.++
T Consensus 218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~-------------~g~d~lf~gs~~gds~l~~ 284 (504)
T PF10433_consen 218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLK-------------NGGDYLFVGSEFGDSQLLQ 284 (504)
T ss_dssp SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEES-------------TT--EEEEEESSS-EEEEE
T ss_pred ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEc-------------CCCEEEEEEEecCCcEEEE
Confidence 345566666677778777776664321 11122222 44556666665 22 378888776554443
Q ss_pred -c--CCceeeeccCCCCceEEEEeeecCCCCCC------EEEEee---CCCcEEEEeccCCCccccccceeeccCCCCce
Q 010784 194 -W--KGSCQRCFKGHNGPVSTLSDKLLGDGSGK------ILASGG---EDATVRLWSLSSSGKRGQQALKATLYGHEKPI 261 (501)
Q Consensus 194 -d--~~~~~~~~~~h~~~v~~l~~s~~~~~~~~------~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 261 (501)
. .-..+..+. .-++|.++++....+.... .|++++ .+|.+++..-.-+-. ........+.+ -..+
T Consensus 285 ~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~-~~~~~~~~l~~-v~~i 361 (504)
T PF10433_consen 285 ISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIE-GLELASSELPG-VTGI 361 (504)
T ss_dssp EESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE---EEEEEEEST-EEEE
T ss_pred EeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCce-eeeeeccCCCC-ceEE
Confidence 3 233344444 4678988887522212222 455443 577888874322110 00001111221 2334
Q ss_pred eEEEEeecCCeEEEEEeCCCeEEEEECC---CCccccceecccceecCCCceee-ecCCCeEEEEeCCcEEEEEcCCCce
Q 010784 262 KLMSVAGHKSFLLVTISKDSKVRVWDTS---TSSAVRSSCCVGMTSVPGVPVDM-KCHESMLYIASGSSVVTIDLRTMQK 337 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~dg~v~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~ 337 (501)
+.+.....+..+++.+..+ .-+++.+. ....+...... .+......+.+ .......+=++...|++.+....+.
T Consensus 362 W~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~ 439 (504)
T PF10433_consen 362 WTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKL 439 (504)
T ss_dssp EEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSE
T ss_pred EEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeE
Confidence 4444332224566655554 44555553 22221111111 12222222222 2235555566777899999888777
Q ss_pred EeeeccC-CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-c---CcccCeEEEEecC
Q 010784 338 VMTPAIC-KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-D---GHVGSVTQLHMDP 402 (501)
Q Consensus 338 ~~~~~~~-~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~~~ 402 (501)
....... ...|.+.+.. ++..+++.+.+.+..+.+...... .... . .....|.|+..+|
T Consensus 440 ~~~w~~~~~~~I~~a~~~-~~~v~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 440 TQEWKPPAGSIIVAASIN-DPQVLVALSGGELVYFELDDNKIS-----VSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEEEE-TTS---SEEEES-SSEEEEEE-TTEEEEEEEETTEEE-----EEEE----EE-SS-EEEEE---
T ss_pred EEEEeCCCCCeEEEEEEC-CCEEEEEEeCCcEEEEEEECCcee-----eeeeccccccCCCceEEEEeCC
Confidence 7655433 3445555543 344444444444888887764432 0111 0 1356788887766
No 435
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=2.9 Score=43.87 Aligned_cols=140 Identities=13% Similarity=-0.049 Sum_probs=85.6
Q ss_pred cCCCCceEEeeCCcEEEeec--CCeeeEEEEecccccc----cceeccc------CCcceeEEEeeccCcCcccccCCCC
Q 010784 109 VAKPHDHILLDNNDIFSTQG--SSIQNIKIDNFLSESY----YRATLSD------HKARITCMRLFPLHETSLFRSEPQR 176 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g--~~d~~i~vw~~~~~~~----~~~~~~~------h~~~V~~~~~~~~~~~~~~~~~~~~ 176 (501)
...++..+...+|+...++- +.+-.|..+|+.+-.. ...-|.. ...-..++.|+|.-
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v----------- 167 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV----------- 167 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----------
Confidence 34457777777776655544 3455888999874211 1111222 23346678888741
Q ss_pred cCcEEEEeeCCCceEEecC---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee
Q 010784 177 TENVLVTSSCDHSIRLWWK---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT 253 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (501)
....+....|+.|+|... ......+. -...++|++|+ +.|..++.|-.+|++.-|-..-..+. .+.....
T Consensus 168 -p~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WS----prGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp~ 240 (1405)
T KOG3630|consen 168 -PLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWS----PRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPPV 240 (1405)
T ss_pred -cchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEec----cccceeeEecCCCeEEEeecccceee-cccCCCc
Confidence 245666777999998862 22222232 46678999998 89999999999999998876543210 0001111
Q ss_pred ccCCCCceeEEEEee
Q 010784 254 LYGHEKPIKLMSVAG 268 (501)
Q Consensus 254 ~~~~~~~v~~l~~~~ 268 (501)
. ....|.+|.|..
T Consensus 241 ~--e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 241 E--ENYRVLSVTWLS 253 (1405)
T ss_pred C--CCcceeEEEEec
Confidence 1 157899999984
No 436
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.72 E-value=20 Score=36.15 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=43.2
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEE
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRL 192 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~v 192 (501)
++++.-+|.|.-++.+..||.++++++.+. ...+.. ....+-..+.|.. .-|+++..|..+.-
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r-~qski~-~~~~p~~nlv~tn---------------hgl~~~tsdrr~la 79 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPR-RQSKIC-EEAKPKENLVFTN---------------HGLVTATSDRRALA 79 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeeccc-chhhhh-hhcCCccceeeec---------------cceEEEeccchhhe
Confidence 677788899999999999999999998753 221111 1122233344432 44666777888888
Q ss_pred ec
Q 010784 193 WW 194 (501)
Q Consensus 193 wd 194 (501)
|.
T Consensus 80 ~~ 81 (1636)
T KOG3616|consen 80 WK 81 (1636)
T ss_pred ee
Confidence 86
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=21 Score=36.07 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=40.1
Q ss_pred CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceee
Q 010784 129 SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQR 200 (501)
Q Consensus 129 ~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~ 200 (501)
+.-..|+|++.. ++++..+.-....+-.+.|+. ...|+.-..+|++.||+ .|..+.
T Consensus 61 ~a~~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~--------------~eeLI~v~k~g~v~Vy~~~ge~ie 117 (829)
T KOG2280|consen 61 SARPYIRIFNIS--GQLLGRILWKHGELIGMGWSD--------------DEELICVQKDGTVHVYGLLGEFIE 117 (829)
T ss_pred ccceeEEEEecc--ccchHHHHhcCCCeeeecccC--------------CceEEEEeccceEEEeecchhhhc
Confidence 445678888877 466555544444788999995 56788889999999998 554443
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.46 E-value=12 Score=35.24 Aligned_cols=105 Identities=8% Similarity=0.030 Sum_probs=71.0
Q ss_pred CCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC
Q 010784 344 CKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD 421 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~ 421 (501)
..++|.++.|++|.+.+|+--.++ |.+++....+.. ....++.+.....|....|+.. .+... .+.-+.+|.+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~--l~~~~~ck~k~~~IlGF~W~~s~e~A~i--~~~G~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ--LEYTQECKTKNANILGFCWTSSTEIAFI--TDQGIEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchh--hHHHHHhccCcceeEEEEEecCeeEEEE--ecCCeEEEEEc
Confidence 367999999999999999999888 999998544322 1223344444566899999888 44443 33447888765
Q ss_pred Ccc-cccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 422 TGM-LANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 422 ~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
..+ .++.. +.+...|+-..|+++-+.+.-++
T Consensus 141 pekrslRlV-----ks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLV-----KSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhh-----hhcccCccEEEEccccceEeeec
Confidence 432 23333 34566788888888887655544
No 439
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.32 E-value=19 Score=35.30 Aligned_cols=157 Identities=12% Similarity=0.117 Sum_probs=86.5
Q ss_pred cCCCCceEEeeCCcEEEeecCC--eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSS--IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSC 186 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~--d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 186 (501)
.-.|+.-++|......+.|.-. .|.++.=| ...+ |.-+.|..+.|.|.+. .+...+++...
T Consensus 18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd----s~vi----GqFEhV~GlsW~P~~~---------~~~paLLAVQH 80 (671)
T PF15390_consen 18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD----SKVI----GQFEHVHGLSWAPPCT---------ADTPALLAVQH 80 (671)
T ss_pred hhccccceEecCCCEEEEEeeeeeCCccccCC----ccEe----eccceeeeeeecCccc---------CCCCceEEEec
Confidence 3456778888876666665532 23333222 1222 4446799999998431 13445666677
Q ss_pred CCceEEec-------CCceeeeccCC-CC--ce--EEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeec
Q 010784 187 DHSIRLWW-------KGSCQRCFKGH-NG--PV--STLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 187 dg~i~vwd-------~~~~~~~~~~h-~~--~v--~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
...|.||- .++.+.....+ .. +| ..+.|+ |....|+.-.....-.++++..... +....+
T Consensus 81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH----Pk~~iL~VLT~~dvSV~~sV~~d~s----rVkaDi 152 (671)
T PF15390_consen 81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH----PKKAILTVLTARDVSVLPSVHCDSS----RVKADI 152 (671)
T ss_pred cceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc----CCCceEEEEecCceeEeeeeeeCCc----eEEEec
Confidence 88999996 22222221111 11 11 234676 6666666555444435566655443 123334
Q ss_pred cCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784 255 YGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 255 ~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~ 291 (501)
...+.|.|.+|..++.+++++.+..=.-++||-...
T Consensus 153 -~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 153 -KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred -cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 456789999999844444444444445678886544
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.14 E-value=1.7 Score=37.36 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=46.3
Q ss_pred CCCcEEEEEcCCc-EEEEecCCCCCCCCCCCccccc--------CcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCc
Q 010784 355 PSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELD--------GHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTG 423 (501)
Q Consensus 355 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~ 423 (501)
.++.++++-+.++ +++||+.+.+...+...+..+- .....|..+.++.+ .-+++- .+|..+.|+..-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccc
Confidence 4677788888777 9999999988764442333222 34567888888877 444443 4678899987644
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.99 E-value=1.3 Score=26.22 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=23.3
Q ss_pred CcEEEEEEcCCC---cEEEEEcCCc-EEEEecCC
Q 010784 346 PILHSFSIMPSK---SLICTGGIGK-AMTWDIRR 375 (501)
Q Consensus 346 ~~v~~v~~~~~~---~~l~~~~~d~-i~iwd~~~ 375 (501)
+.+.++.|+|+. .+|+.+-.-+ +.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999853 4777776656 99999995
No 442
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.15 E-value=21 Score=34.08 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=63.2
Q ss_pred cCcEEEEeeCCCceEEec-CCce-----eeeccCCCCceEEEEeeec-CCCCCCEEEEeeCCCcEEEEeccCCCcc---c
Q 010784 177 TENVLVTSSCDHSIRLWW-KGSC-----QRCFKGHNGPVSTLSDKLL-GDGSGKILASGGEDATVRLWSLSSSGKR---G 246 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~~~-----~~~~~~h~~~v~~l~~s~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~---~ 246 (501)
+...+++|+..|.++||+ .... +..-..-..+|..+..-.+ ...+...||. -.-..+.+|.+...... +
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 457999999999999998 1111 1111234578888875422 1222334443 55677888887432210 0
Q ss_pred cccceeeccCCCCc--eeEEEEeec----CCeEEEEEeCCCeEEEEECCCC
Q 010784 247 QQALKATLYGHEKP--IKLMSVAGH----KSFLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 247 ~~~~~~~~~~~~~~--v~~l~~~~~----~~~~l~s~s~dg~v~vwd~~~~ 291 (501)
....+.....|.-. ...+.+-|- +..++..-+.||.+.+++-+..
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence 11112222223221 222333221 2468888999999999997764
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.11 E-value=2.9 Score=35.94 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCCCEEEEeeCCCcEEEEeccCCCcccccccee-ecc-------CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784 220 GSGKILASGGEDATVRLWSLSSSGKRGQQALKA-TLY-------GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 220 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~-------~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~ 291 (501)
..+++|++-..+|.+++||+.+++.......+. .+. .....|..+.+.. +|.-+++-+ +|..+.|+..-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccccc
Confidence 467889999999999999999876522211111 122 3556788888874 565565554 578899987655
Q ss_pred c
Q 010784 292 S 292 (501)
Q Consensus 292 ~ 292 (501)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 3
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.06 E-value=10 Score=36.31 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=88.8
Q ss_pred EEEeecCCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec---CCcee
Q 010784 123 IFSTQGSSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW---KGSCQ 199 (501)
Q Consensus 123 ~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd---~~~~~ 199 (501)
.++..|+....++-.|++.| +.+..+.-|.+. -+.|.|...-... .+.+.|+--| +..|---| .|..+
T Consensus 481 li~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qm-----t~eqtlvGlS-~~svFrIDPR~~gNKi 551 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQM-----TDEQTLVGLS-DYSVFRIDPRARGNKI 551 (776)
T ss_pred eEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhc-----CccceEEeec-ccceEEecccccCCce
Confidence 44557777777888888885 888888877765 5777774210000 0233444444 44443335 34332
Q ss_pred eecc----CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEE
Q 010784 200 RCFK----GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLV 275 (501)
Q Consensus 200 ~~~~----~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~ 275 (501)
.... .......|..- ....+++.|+..|.|++||--... ....+.+-...|..|.... +|..++
T Consensus 552 ~v~esKdY~tKn~Fss~~t-----TesGyIa~as~kGDirLyDRig~r------AKtalP~lG~aIk~idvta-~Gk~il 619 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMT-----TESGYIAAASRKGDIRLYDRIGKR------AKTALPGLGDAIKHIDVTA-NGKHIL 619 (776)
T ss_pred eeeeehhcccccccccccc-----ccCceEEEecCCCceeeehhhcch------hhhcCcccccceeeeEeec-CCcEEE
Confidence 2211 12223333332 456799999999999999976543 2455667778899999986 555555
Q ss_pred EEeCCCeEEEEECCC
Q 010784 276 TISKDSKVRVWDTST 290 (501)
Q Consensus 276 s~s~dg~v~vwd~~~ 290 (501)
+.+. ..+.+-|++-
T Consensus 620 aTCk-~yllL~d~~i 633 (776)
T COG5167 620 ATCK-NYLLLTDVPI 633 (776)
T ss_pred Eeec-ceEEEEeccc
Confidence 5444 5688888764
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.89 E-value=9.1 Score=29.52 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=69.5
Q ss_pred eEEeeCCcEEEeecCCeeeEEEEeccccc-------ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 115 HILLDNNDIFSTQGSSIQNIKIDNFLSES-------YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 115 ~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
.-.|+.....|+++..-+.|.|++..... ..+..| .-...|++|+--+... ..+...|+.|+ .
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~--------~~~~D~LliGt-~ 72 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP--------DDGRDCLLIGT-Q 72 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC--------CCCcCEEEEec-c
Confidence 34567777788888888999999876421 112222 2345677776554210 12456777777 4
Q ss_pred CceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCC
Q 010784 188 HSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSS 242 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~ 242 (501)
..+..|| ....-..++.-...|+++.+--..+....+++.|+ +..|.-||.+..
T Consensus 73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~ 127 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN 127 (136)
T ss_pred ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc
Confidence 5788998 33333334445577888877433333455666664 456666666544
No 446
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=88.78 E-value=0.062 Score=47.34 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=46.0
Q ss_pred ccccccHHHHHHHHhcCChhhhHHHHhhChhHHHHcCCchhHHHHHhhhc
Q 010784 19 AIADLNEDAVAHCALNLSLQDISNMAMSCKLFKHVAYSDSVWQRLFREQW 68 (501)
Q Consensus 19 ~~~~Lp~e~~~~i~~~L~~~~l~~~~~vc~~~~~~~~~~~lW~~~~~~~~ 68 (501)
.+..||..++..++++|..+++.++|.|++++..+.+-..+|.+-+.+.|
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 45668999999999999999999999999999999999999999888865
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.70 E-value=5 Score=40.66 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=77.3
Q ss_pred cCCCCceEEee--CCcEEEeecCCeeeEEEEecccccc-------------------cceecccCCcceeEEEee--ccC
Q 010784 109 VAKPHDHILLD--NNDIFSTQGSSIQNIKIDNFLSESY-------------------YRATLSDHKARITCMRLF--PLH 165 (501)
Q Consensus 109 ~~~~i~~~~~~--~~~~~~~~g~~d~~i~vw~~~~~~~-------------------~~~~~~~h~~~V~~~~~~--~~~ 165 (501)
.+..|+.|.+. .+..+|+.+..||.|.+|..++-.. +...+ .-...+++++++ .
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~-- 175 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYK-- 175 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecC--
Confidence 44558888777 5778899999999999997643110 01111 123467777776 4
Q ss_pred cCcccccCCCCcCcEEEEeeCCCceEEec--C--Cc-eeeeccCCCCceEEEEeeecC-CCCCC-EEEEeeCCCcEEEEe
Q 010784 166 ETSLFRSEPQRTENVLVTSSCDHSIRLWW--K--GS-CQRCFKGHNGPVSTLSDKLLG-DGSGK-ILASGGEDATVRLWS 238 (501)
Q Consensus 166 ~~~~~~~~~~~~~~~l~s~~~dg~i~vwd--~--~~-~~~~~~~h~~~v~~l~~s~~~-~~~~~-~l~sg~~dg~i~iwd 238 (501)
..+++|.++....|.||- . .+ ....-..|...|-+++|.... ++.|. .|++++-.|.+.+|+
T Consensus 176 -----------~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 176 -----------KSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred -----------cceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 578888888888999984 1 11 111112367789999996322 12232 788899999999988
Q ss_pred c
Q 010784 239 L 239 (501)
Q Consensus 239 ~ 239 (501)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 8
No 448
>PRK13684 Ycf48-like protein; Provisional
Probab=88.69 E-value=20 Score=33.26 Aligned_cols=114 Identities=15% Similarity=-0.025 Sum_probs=64.9
Q ss_pred CCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc-cCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCC
Q 010784 345 KPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL-DGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~ 422 (501)
...++++.+.++++.++++..+.+++=....+.. .+.+..- ......+.++.+.++ .++++| .+|.+. .....
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s---W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~ 288 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES---WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG 288 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCc---cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC
Confidence 4567889999999888877654443222333221 1111110 011235788889888 777776 777655 34444
Q ss_pred cccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 423 GMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
|+.-...... ..-......+.|..+++.+++| ..|.|.-++
T Consensus 289 G~tW~~~~~~--~~~~~~~~~~~~~~~~~~~~~G---~~G~il~~~ 329 (334)
T PRK13684 289 GKTWEKDPVG--EEVPSNFYKIVFLDPEKGFVLG---QRGVLLRYV 329 (334)
T ss_pred CCCCeECCcC--CCCCcceEEEEEeCCCceEEEC---CCceEEEec
Confidence 4443333210 1112356777888777777776 558877665
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.47 E-value=14 Score=31.21 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=59.2
Q ss_pred cEEEEeeCCCceEEec-C---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCC------CcEEEE---eccC-CCc
Q 010784 179 NVLVTSSCDHSIRLWW-K---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGED------ATVRLW---SLSS-SGK 244 (501)
Q Consensus 179 ~~l~s~~~dg~i~vwd-~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~d------g~i~iw---d~~~-~~~ 244 (501)
+.|+.+...+.|.+|+ . .+.+..|. .-+.|..+.++ ..|++|+|-=.+ ..+|+| .... ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~----~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYS----EAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEec----cccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3443335567799998 2 23344554 34789999997 789999985322 155654 2221 111
Q ss_pred cc-----------------cc-cceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 245 RG-----------------QQ-ALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 245 ~~-----------------~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
+. .. -.+..+. -..++.+++..|..|++++. + ++.+.+|.+....
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQT 166 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEEE
Confidence 00 00 0001111 23456788888877776654 3 3678999876543
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=14 Score=30.99 Aligned_cols=185 Identities=12% Similarity=0.049 Sum_probs=87.7
Q ss_pred eEEEEeecCCeEEEEEeC--CCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEe--CCcEEEEEcCCCce
Q 010784 262 KLMSVAGHKSFLLVTISK--DSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIAS--GSSVVTIDLRTMQK 337 (501)
Q Consensus 262 ~~l~~~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~ 337 (501)
..+.+. ++.++.+.+. ...|++||+++++.+.+..... . ...-..+.-.++..+..+ .+.-..+|..+.+.
T Consensus 49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~--~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-D--TVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred cceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCC-c--cccccceeeccceEEEEEeccceeEEEChHHhhh
Confidence 345554 5667777654 4569999999998765543321 0 000111112223333322 33556677777776
Q ss_pred EeeeccCCCcEEEEEEcCCCcEEEEEc-CCcEEEEecCCCCCCCCCCCcccccCc-ccCeEEEEecCCeEEEEecCCCcE
Q 010784 338 VMTPAICKPILHSFSIMPSKSLICTGG-IGKAMTWDIRRSQDAVKPQPMAELDGH-VGSVTQLHMDPYKIVTGGRDDLRI 415 (501)
Q Consensus 338 ~~~~~~~~~~v~~v~~~~~~~~l~~~~-~d~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~l~~gs~dg~i 415 (501)
+..+.- ++.-..++. |+.-|..+. ...++.-|..+.... .....++.+- -..++-+.|-...+.|-.=.+..|
T Consensus 124 lg~~~y-~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~--~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I 198 (262)
T COG3823 124 LGRFSY-EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAEL--DTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRI 198 (262)
T ss_pred hccccc-CCcceeeec--CCcceEeeCCceEEEecCHHHhhhc--ceEEEEECCeecccccceeeeccEEEEeeeeecce
Confidence 655442 333344443 444444444 333777777664433 1111111110 112223333333333322233344
Q ss_pred EEEeCCCcccccccccC-------CCCCCCcceeeeEeeccc-cEEEEe
Q 010784 416 NIWETDTGMLANSLLCN-------YPEEADISTGCSAMAVSG-CRIVTA 456 (501)
Q Consensus 416 ~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g-~~l~s~ 456 (501)
...+..+|+.+..+... ....+....+.+++.|++ +++++|
T Consensus 199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44555555544433211 112345567889999988 555555
No 451
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.29 E-value=13 Score=38.48 Aligned_cols=78 Identities=15% Similarity=0.295 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCcEEEEEcCCcEEEEecCCC----------CCCCCCC--Cccc--c-cCcccCeEEEEecCC----eEE
Q 010784 346 PILHSFSIMPSKSLICTGGIGKAMTWDIRRS----------QDAVKPQ--PMAE--L-DGHVGSVTQLHMDPY----KIV 406 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~----------~~~~~~~--~~~~--~-~~h~~~v~~l~~~~~----~~l 406 (501)
-.|..|.++|+|.+++..+..+|.|-.+... +.....+ ++.. + ..+...|..+.|+|. ..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4588999999999999999888666665421 1100000 0000 1 123457889999985 444
Q ss_pred EEecCCCcEEEEeCCCc
Q 010784 407 TGGRDDLRINIWETDTG 423 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~ 423 (501)
+.-+.|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 44468999999999753
No 452
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.12 E-value=18 Score=32.08 Aligned_cols=313 Identities=10% Similarity=0.069 Sum_probs=172.1
Q ss_pred CCCceEEeeCCcEEEeecCCeeeEEEEeccccc-ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCc
Q 010784 111 KPHDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHS 189 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~ 189 (501)
+.+..+.......++.+|..--...+|+..... ......-.-.+-+..+.++. ++...+..+.-
T Consensus 43 ~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse---------------~yvyvad~ssG 107 (370)
T COG5276 43 KGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSE---------------EYVYVADWSSG 107 (370)
T ss_pred CCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecc---------------cEEEEEcCCCc
Confidence 557788888888888888776777777755210 01111122345677777764 67777777777
Q ss_pred eEEec--C---CceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEE
Q 010784 190 IRLWW--K---GSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLM 264 (501)
Q Consensus 190 i~vwd--~---~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 264 (501)
++|.| + ...+..+. ..+--.++.. .|++.+.+..|.-+.+.|+.+... ..+.............+
T Consensus 108 L~IvDIS~P~sP~~~~~ln-t~gyaygv~v------sGn~aYVadlddgfLivdvsdpss---P~lagrya~~~~d~~~v 177 (370)
T COG5276 108 LRIVDISTPDSPTLIGFLN-TDGYAYGVYV------SGNYAYVADLDDGFLIVDVSDPSS---PQLAGRYALPGGDTHDV 177 (370)
T ss_pred eEEEeccCCCCcceecccc-CCceEEEEEe------cCCEEEEeeccCcEEEEECCCCCC---ceeeeeeccCCCCceeE
Confidence 99998 1 22222222 2233445554 588999888777778889987654 12333344444444566
Q ss_pred EEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCC-cEEEEEcCCCceEeeecc
Q 010784 265 SVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGS-SVVTIDLRTMQKVMTPAI 343 (501)
Q Consensus 265 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~ 343 (501)
+++ +++-..+..|+-+.+-|+...... ..............+..+++..+++..+ .+.+.|....+....+..
T Consensus 178 ~IS---Gn~AYvA~~d~GL~ivDVSnp~sP---vli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gs 251 (370)
T COG5276 178 AIS---GNYAYVAWRDGGLTIVDVSNPHSP---VLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGS 251 (370)
T ss_pred EEe---cCeEEEEEeCCCeEEEEccCCCCC---eEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeec
Confidence 665 456777778999999999876421 2223334444667777777777777654 677777776664443332
Q ss_pred C-CCc---EEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEE
Q 010784 344 C-KPI---LHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINI 417 (501)
Q Consensus 344 ~-~~~---v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~i 417 (501)
. ... ++.+.. .+++......+. +-+-|+.+.... .....+......-..+..... ..++- .+ ...+
T Consensus 252 yet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp---fl~ss~~t~g~~a~gi~ay~~y~yiad--kn-~g~v 323 (370)
T COG5276 252 YETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP---FLSSSLDTAGYQAAGIRAYGNYNYIAD--KN-TGAV 323 (370)
T ss_pred cccCCcccccceec--ccceeeeeccccCceeEeccCCCCC---chhccccCCCccccceEEecCeeEecc--CC-ceEE
Confidence 1 122 222333 345555555444 777777765432 111111111123334444444 22222 11 3344
Q ss_pred EeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeec
Q 010784 418 WETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDF 469 (501)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~ 469 (501)
-+....+.+... .+....+.+.+.+-+.+.+.+.-++ +-+.+|+.
T Consensus 324 V~~s~~s~m~~~-----~g~~ti~~s~~v~~~~q~~y~~d~~--~gl~i~~~ 368 (370)
T COG5276 324 VDASPPSMMDKR-----PGRPTIGQSCDVSVDTQIIYSTDYN--GGLSIIEY 368 (370)
T ss_pred EeCCChhhcccc-----cCcceEeeecceEEEeeEEEEeecC--CCEEEEEe
Confidence 444433332222 1222334555666667777776643 77777775
No 453
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=23 Score=38.33 Aligned_cols=78 Identities=8% Similarity=0.140 Sum_probs=53.5
Q ss_pred CCCcEEEEEEcCCCcEEEEEcCCcEEE--EecCCC---C-CC----C-------CCCCccccc-CcccCeEEEEecCC-e
Q 010784 344 CKPILHSFSIMPSKSLICTGGIGKAMT--WDIRRS---Q-DA----V-------KPQPMAELD-GHVGSVTQLHMDPY-K 404 (501)
Q Consensus 344 ~~~~v~~v~~~~~~~~l~~~~~d~i~i--wd~~~~---~-~~----~-------~~~~~~~~~-~h~~~v~~l~~~~~-~ 404 (501)
..-.|+++....+|+.+.+|-+|+|+- |....+ + +. . -+. +..+. .+..+|..+.++.. .
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEeccccc
Confidence 356688888888999999998886332 222211 0 00 0 011 22233 56789999999998 8
Q ss_pred EEEEecCCCcEEEEeCCC
Q 010784 405 IVTGGRDDLRINIWETDT 422 (501)
Q Consensus 405 ~l~~gs~dg~i~iwd~~~ 422 (501)
++.+-+..|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 888888999999999976
No 454
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=1.4 Score=45.92 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=73.2
Q ss_pred CcEEEEEEcCCCcEEEEE--cCCc-EEEEecCCCCCCCC--CCCcc---cccCcccCeEEEEecCC--eEEEEecCCCcE
Q 010784 346 PILHSFSIMPSKSLICTG--GIGK-AMTWDIRRSQDAVK--PQPMA---ELDGHVGSVTQLHMDPY--KIVTGGRDDLRI 415 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~--~~d~-i~iwd~~~~~~~~~--~~~~~---~~~~h~~~v~~l~~~~~--~~l~~gs~dg~i 415 (501)
-.+..+...+|+...++. +.|. |..||++....... ..++. +......-..++.|+|. ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345566667776554433 3555 99999987543200 01111 11112334567889998 444445689999
Q ss_pred EEEeCCCc-ccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeecc
Q 010784 416 NIWETDTG-MLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFS 470 (501)
Q Consensus 416 ~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~ 470 (501)
++..+... ....++ .-....++++|+|.|+.++.|- +.|++.-|...
T Consensus 181 ~V~~~~~~~~~v~s~------p~t~~~Tav~WSprGKQl~iG~--nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF------PVTNSQTAVLWSPRGKQLFIGR--NNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhhccc------CcccceeeEEeccccceeeEec--CCCeEEEeecc
Confidence 99887532 222232 2356789999999999999998 77998888754
No 455
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.76 E-value=19 Score=31.85 Aligned_cols=147 Identities=12% Similarity=0.029 Sum_probs=84.8
Q ss_pred CCceEEeeCCcEEEeecC---CeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCC
Q 010784 112 PHDHILLDNNDIFSTQGS---SIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDH 188 (501)
Q Consensus 112 ~i~~~~~~~~~~~~~~g~---~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 188 (501)
.+.+.++++++..+|.-. ....+.++... ......+.+. .+..-.|.+ ++...+....+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~-------------~g~~W~v~~~~~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDP-------------DGWVWTVDDGSG 87 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccC-------------CCCEEEEEcCCC
Confidence 478899999998766443 34455555544 2333333333 677777777 777777766666
Q ss_pred ceEEec---CCcee-eec--cCCCCceEEEEeeecCCCCCCEEEEee---CCCcEEEEeccCCCcc---ccccceeeccC
Q 010784 189 SIRLWW---KGSCQ-RCF--KGHNGPVSTLSDKLLGDGSGKILASGG---EDATVRLWSLSSSGKR---GQQALKATLYG 256 (501)
Q Consensus 189 ~i~vwd---~~~~~-~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~---~~~~~~~~~~~ 256 (501)
..+++. .+... ... ..-.+.|+.+.+| ++|..++.-. .++.|.+=-+...... ...........
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS----pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~ 163 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPGLRGRITALRVS----PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP 163 (253)
T ss_pred ceEEEEecCCCcceeEEecccccCCceEEEEEC----CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence 667662 22221 111 1112289999997 8998877655 3577777765543321 00111222223
Q ss_pred CCCceeEEEEeecCCeEEEEEeCC
Q 010784 257 HEKPIKLMSVAGHKSFLLVTISKD 280 (501)
Q Consensus 257 ~~~~v~~l~~~~~~~~~l~s~s~d 280 (501)
....++.+.|.+ +..+++.+...
T Consensus 164 ~~~~v~~v~W~~-~~~L~V~~~~~ 186 (253)
T PF10647_consen 164 LLSDVTDVAWSD-DSTLVVLGRSA 186 (253)
T ss_pred ccCcceeeeecC-CCEEEEEeCCC
Confidence 456789999996 55555555443
No 456
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.56 E-value=22 Score=32.32 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=120.3
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceec--ccC---CcceeEEEeeccCcCcccccCCCCcCcEEEE
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATL--SDH---KARITCMRLFPLHETSLFRSEPQRTENVLVT 183 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~--~~h---~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s 183 (501)
...++..|.|..+..-+++|.....++--| +.+--... ... .-..++|.|.. ...+++
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~D---GG~tW~~~~~~~~~~~~~~l~~I~f~~--------------~~g~iv 77 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTD---GGKTWQPVSLDLDNPFDYHLNSISFDG--------------NEGWIV 77 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEEEEESS---TTSS-EE-----S-----EEEEEEEET--------------TEEEEE
T ss_pred CCCceEEEEEecCCEEEEEecCCEEEEECC---CCccccccccCCCccceeeEEEEEecC--------------CceEEE
Confidence 344678888887777777787644333322 21111111 111 12356777754 344554
Q ss_pred eeCCCceEEe-cCCceeeecc---CCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCCCC
Q 010784 184 SSCDHSIRLW-WKGSCQRCFK---GHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEK 259 (501)
Q Consensus 184 ~~~dg~i~vw-d~~~~~~~~~---~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 259 (501)
| ..|.|.-- |.++.-..+. .-.+....+... .++..++. +..|. ||....+.. .+ ......-.+
T Consensus 78 G-~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l----~~~~~~l~-~~~G~--iy~T~DgG~--tW--~~~~~~~~g 145 (302)
T PF14870_consen 78 G-EPGLLLHTTDGGKTWERVPLSSKLPGSPFGITAL----GDGSAELA-GDRGA--IYRTTDGGK--TW--QAVVSETSG 145 (302)
T ss_dssp E-ETTEEEEESSTTSS-EE----TT-SS-EEEEEEE----ETTEEEEE-ETT----EEEESSTTS--SE--EEEE-S---
T ss_pred c-CCceEEEecCCCCCcEEeecCCCCCCCeeEEEEc----CCCcEEEE-cCCCc--EEEeCCCCC--Ce--eEcccCCcc
Confidence 4 45554433 2333222211 112222333332 23333333 44454 444444332 11 222334456
Q ss_pred ceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEe
Q 010784 260 PIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVM 339 (501)
Q Consensus 260 ~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 339 (501)
.+..+..++ ++.++++++......-||--...-..
T Consensus 146 s~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~-------------------------------------------- 180 (302)
T PF14870_consen 146 SINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQP-------------------------------------------- 180 (302)
T ss_dssp -EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EE--------------------------------------------
T ss_pred eeEeEEECC-CCcEEEEECcccEEEEecCCCccceE--------------------------------------------
Confidence 777777775 77777777665555667654321100
Q ss_pred eeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecC-CCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEE
Q 010784 340 TPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIR-RSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRIN 416 (501)
Q Consensus 340 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~ 416 (501)
.-+.-...|.++.|.|++.+.+.+ .++ |+.=+.. ..+.- .+++..+....-.+..+++.++ .+.++| ..|.+.
T Consensus 181 ~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w--~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l~ 256 (302)
T PF14870_consen 181 HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW--SEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTLL 256 (302)
T ss_dssp EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-----B-TTSS--S-EEEEEESSSS-EEEEE-STT-EE
T ss_pred EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc--ccccCCcccCceeeEEEEecCCCCEEEEe-CCccEE
Confidence 011125678999999998887766 555 7777622 11111 1111222222345889999988 788876 555443
Q ss_pred EEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEe
Q 010784 417 IWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFR 467 (501)
Q Consensus 417 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w 467 (501)
.....|+.=...... ..-......+.|..+.+-++.| ++|.|.-|
T Consensus 257 -~S~DgGktW~~~~~~--~~~~~n~~~i~f~~~~~gf~lG---~~G~ll~~ 301 (302)
T PF14870_consen 257 -VSTDGGKTWQKDRVG--ENVPSNLYRIVFVNPDKGFVLG---QDGVLLRY 301 (302)
T ss_dssp -EESSTTSS-EE-GGG--TTSSS---EEEEEETTEEEEE----STTEEEEE
T ss_pred -EeCCCCccceECccc--cCCCCceEEEEEcCCCceEEEC---CCcEEEEe
Confidence 334445433333211 1224457788888777777776 56877654
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.43 E-value=9.6 Score=40.97 Aligned_cols=151 Identities=14% Similarity=0.117 Sum_probs=92.1
Q ss_pred CeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEc-C-------C-CcEEEEEcCCcEEEEecCCCCCCCCCCC---
Q 010784 317 SMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIM-P-------S-KSLICTGGIGKAMTWDIRRSQDAVKPQP--- 384 (501)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~-~-------~-~~~l~~~~~d~i~iwd~~~~~~~~~~~~--- 384 (501)
...+++.++.+.+|+.+++.....+.+-...|..|..- | . ..+|+.++.-.|.++-+...+.......
T Consensus 91 ~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~ 170 (1311)
T KOG1900|consen 91 GRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT 170 (1311)
T ss_pred cceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence 34678888999999999988877777777777766542 2 2 3345555543366654433221100000
Q ss_pred cccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCC----Cc---c--------------cccccccCCCCCCCccee
Q 010784 385 MAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETD----TG---M--------------LANSLLCNYPEEADISTG 442 (501)
Q Consensus 385 ~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~----~~---~--------------~~~~~~~~~~~~~~~~v~ 442 (501)
..++......|+++....+ +++.+| .|| .+|.+. ++ + .+.++. ..+..+..+|.
T Consensus 171 ~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~-~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL-SVPGSSKDPIR 246 (1311)
T ss_pred ceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhh-cCCCCCCCcce
Confidence 0112222456888886666 999987 777 555542 11 1 011111 01124567899
Q ss_pred eeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 443 CSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 443 ~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
.+........+.+-+ +.|.|.+|++...+
T Consensus 247 qi~ID~SR~IlY~ls--ek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLS--EKGTVSAYDIGGNG 275 (1311)
T ss_pred eeEeccccceeeeec--cCceEEEEEccCCC
Confidence 999988888888888 78999999988744
No 458
>PRK10115 protease 2; Provisional
Probab=86.78 E-value=42 Score=34.83 Aligned_cols=109 Identities=7% Similarity=0.015 Sum_probs=59.8
Q ss_pred CceEEeeCCcEEEeec-----CCeeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 113 HDHILLDNNDIFSTQG-----SSIQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g-----~~d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
+..+.++|+|++++.+ +....+++-|+.++..+...+.+- -..++|.+ |++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~-------------D~~~~~y~~~~ 192 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWAN-------------DSWTFYYVRKH 192 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEee-------------CCCEEEEEEec
Confidence 6677889999998854 335678888988763222333221 14589998 66655554432
Q ss_pred ------CceEEec--CC--ceeeeccCCCCceEEEEeeecCCCCCCEEEEeeC---CCcEEEEecc
Q 010784 188 ------HSIRLWW--KG--SCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGE---DATVRLWSLS 240 (501)
Q Consensus 188 ------g~i~vwd--~~--~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~---dg~i~iwd~~ 240 (501)
..|..++ ++ .....+........-..+. ..++++++..+. ++.+.+++..
T Consensus 193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~---s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 193 PVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHK---TTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEE---cCCCCEEEEEEECCccccEEEEECc
Confidence 2455555 33 2223333323333312222 246666654443 4578888854
No 459
>PRK10115 protease 2; Provisional
Probab=86.61 E-value=43 Score=34.77 Aligned_cols=240 Identities=11% Similarity=0.001 Sum_probs=111.2
Q ss_pred ceEEEEeeecCCCCCCEEEEee-----CCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCC--
Q 010784 208 PVSTLSDKLLGDGSGKILASGG-----EDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKD-- 280 (501)
Q Consensus 208 ~v~~l~~s~~~~~~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~d-- 280 (501)
.+..+.++ +++++|+.+. ....|++-|+.++.. +...+.+ .. ..++|.+++..++++...+
T Consensus 128 ~l~~~~~S----pdg~~la~~~d~~G~E~~~l~v~d~~tg~~-----l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAIT----PDNTIMALAEDFLSRRQYGIRFRNLETGNW-----YPELLDN-VE--PSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEEC----CCCCEEEEEecCCCcEEEEEEEEECCCCCC-----CCccccC-cc--eEEEEeeCCCEEEEEEecCCC
Confidence 34556665 7888777543 334688888887652 1222222 11 4588987444455554432
Q ss_pred ---CeEEEEECCCCccccceecccceecCCCc-eeee-c-CCCeEEEEeC----CcEEEEEcC--CCceEeeeccCCCcE
Q 010784 281 ---SKVRVWDTSTSSAVRSSCCVGMTSVPGVP-VDMK-C-HESMLYIASG----SSVVTIDLR--TMQKVMTPAICKPIL 348 (501)
Q Consensus 281 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~----~~i~~~d~~--~~~~~~~~~~~~~~v 348 (501)
..|..+++.++..... .+.. ...... .... . +...+++.+. +.+.+++.. .+.....+....+..
T Consensus 196 ~~~~~v~~h~lgt~~~~d~--lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 272 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDE--LVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE 272 (686)
T ss_pred CCCCEEEEEECCCChhHCe--EEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE
Confidence 3577788887732111 1111 111111 1111 1 3333343332 267777742 333222222222333
Q ss_pred EEEEEcCCCcEEEEEcCCc--EEEE--ecCCCCCCCCCCCcccccCc-c-cCeEEEEecCCeEEEEecCCCcEEEEeCCC
Q 010784 349 HSFSIMPSKSLICTGGIGK--AMTW--DIRRSQDAVKPQPMAELDGH-V-GSVTQLHMDPYKIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~~~d~--i~iw--d~~~~~~~~~~~~~~~~~~h-~-~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~ 422 (501)
..+. +..+.+++....+. -+|. ++..... ...+-.+ . ..|..+.+..+.++++...+|.-+++-+..
T Consensus 273 ~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~------~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 273 YSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQ------WEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEE-eCCCEEEEEEcCCCCCceEEEecCCCccc------CeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcC
Confidence 3333 33344444333222 4444 4432111 1233333 2 368888888777777777788766665442
Q ss_pred -cccccccccCCCCCCCcceeeeEee--cccc-EEEEee-cCCCceEEEeeccCCc
Q 010784 423 -GMLANSLLCNYPEEADISTGCSAMA--VSGC-RIVTAS-YGEPGLLQFRDFSNAT 473 (501)
Q Consensus 423 -~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~-~l~s~~-~d~~g~i~~w~~~~~~ 473 (501)
+..+..+... ....+..+.++ +++. ++++.+ ...-+.+..+|...+.
T Consensus 346 ~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 346 KTREVIGIAFD----DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCceEEecCC----CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2233333210 11122333344 3433 443332 2255677777776544
No 460
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.48 E-value=27 Score=32.36 Aligned_cols=50 Identities=8% Similarity=-0.002 Sum_probs=33.3
Q ss_pred CceEEeeCCcEEEeecCCeeeEEEEeccccc-ccce----ecccCCcceeEEEeec
Q 010784 113 HDHILLDNNDIFSTQGSSIQNIKIDNFLSES-YYRA----TLSDHKARITCMRLFP 163 (501)
Q Consensus 113 i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~-~~~~----~~~~h~~~V~~~~~~~ 163 (501)
+..|++.|+|.++++-- .|.|.+.+..... ..+. +..........++++|
T Consensus 4 P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp EEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred ceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceecc
Confidence 57899999999888755 8999998833211 1121 2234456789999998
No 461
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.24 E-value=37 Score=36.77 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.7
Q ss_pred cCC-eEEEEecCCCcEEEEeCCCccc
Q 010784 401 DPY-KIVTGGRDDLRINIWETDTGML 425 (501)
Q Consensus 401 ~~~-~~l~~gs~dg~i~iwd~~~~~~ 425 (501)
+++ ..++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 666 8888889999999999998755
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.23 E-value=28 Score=33.69 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=59.4
Q ss_pred CCcEEEEEEcCCCcEEEEEcC-CcEEEEecCCCCCCCCCCCcccc-c-CcccCeEEEEecCCe--------EEEEecC--
Q 010784 345 KPILHSFSIMPSKSLICTGGI-GKAMTWDIRRSQDAVKPQPMAEL-D-GHVGSVTQLHMDPYK--------IVTGGRD-- 411 (501)
Q Consensus 345 ~~~v~~v~~~~~~~~l~~~~~-d~i~iwd~~~~~~~~~~~~~~~~-~-~h~~~v~~l~~~~~~--------~l~~gs~-- 411 (501)
-.....|+|.|||++|++--. +.|++++........ ...+..+ . .-.+....|+++|+. +.++-+.
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678999999998888874 558888765433210 0001111 1 125678999999873 3333211
Q ss_pred -------CCcEEEEeCCCc--cc--ccccccCCCCCCCcceeeeEeeccccEEEEee
Q 010784 412 -------DLRINIWETDTG--ML--ANSLLCNYPEEADISTGCSAMAVSGCRIVTAS 457 (501)
Q Consensus 412 -------dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 457 (501)
...|.-|.+... .. ...+....+......-..++|.|||.+.++.+
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence 234555554321 11 11111111111122345678999998777655
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=31 Score=33.39 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCcEEEEEcCCcEEEEecC----------CCCCCCC------CCCcccccCcccCeEEEEecCC----eEE
Q 010784 347 ILHSFSIMPSKSLICTGGIGKAMTWDIR----------RSQDAVK------PQPMAELDGHVGSVTQLHMDPY----KIV 406 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~~d~i~iwd~~----------~~~~~~~------~~~~~~~~~h~~~v~~l~~~~~----~~l 406 (501)
.|..+..++.|..++-.+.+||.+..+. .++.... ...+.+-. ..-.+..++|+|+ .-+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccCCceE
Confidence 4678889999999998888885555441 1111100 00011111 1224566789986 233
Q ss_pred EEecCCCcEEEEeCCCccccccc
Q 010784 407 TGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 407 ~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
..-+.|..|++||....+.+...
T Consensus 184 ~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred EEEecCcEEEEEecCCcchhhcc
Confidence 33358999999999877666433
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.33 E-value=8.5 Score=38.72 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=26.2
Q ss_pred cCeEEEEecC----C-eEEEEecCCCcEEEEeCCCccccccc
Q 010784 393 GSVTQLHMDP----Y-KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 393 ~~v~~l~~~~----~-~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
..+..++++. + .++++-+.|+++|+||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3455555555 4 77777789999999999999996654
No 465
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.76 E-value=35 Score=32.05 Aligned_cols=209 Identities=11% Similarity=0.138 Sum_probs=112.4
Q ss_pred CCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCE--EEEee-CC---CcEEEEeccCCCcccc
Q 010784 175 QRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKI--LASGG-ED---ATVRLWSLSSSGKRGQ 247 (501)
Q Consensus 175 ~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~--l~sg~-~d---g~i~iwd~~~~~~~~~ 247 (501)
+|...+++...+++-+.+|| .|+.++.+.. +.++.+....-..-.|+. |+.++ .+ .+|++|.+.....
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g--- 139 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG--- 139 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---
Confidence 34677888888899999999 8888887752 344444331000012222 33443 32 4699998874321
Q ss_pred ccceeeccC-------CCCceeEEEEee--cC-CeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCC
Q 010784 248 QALKATLYG-------HEKPIKLMSVAG--HK-SFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHES 317 (501)
Q Consensus 248 ~~~~~~~~~-------~~~~v~~l~~~~--~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (501)
.+..+.. ....+..+++-. .+ .-+++....+|.+..|-+.....-.
T Consensus 140 --~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~---------------------- 195 (381)
T PF02333_consen 140 --ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK---------------------- 195 (381)
T ss_dssp --EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS----------------------
T ss_pred --cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc----------------------
Confidence 1222211 123466777643 23 3466777888988887764221000
Q ss_pred eEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCc-EEEEecCCCCCCCCCCCcccccC--cccC
Q 010784 318 MLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGK-AMTWDIRRSQDAVKPQPMAELDG--HVGS 394 (501)
Q Consensus 318 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~--h~~~ 394 (501)
+ +.+.++.+.. ...+..+........|..+-++. |.-|+........ ...+....+ ....
T Consensus 196 ---------v------~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~-~~~v~~~~g~~l~aD 258 (381)
T PF02333_consen 196 ---------V------SATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGND-RTLVASADGDGLVAD 258 (381)
T ss_dssp ---------E------EEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S---EEEEEBSSSSB-S-
T ss_pred ---------E------eeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCc-ceeeecccccccccC
Confidence 0 0123445543 45788888888878888888887 8888876432210 122222222 3345
Q ss_pred eEEEEec--CC---eEEEEecCCCcEEEEeCCC-ccccccc
Q 010784 395 VTQLHMD--PY---KIVTGGRDDLRINIWETDT-GMLANSL 429 (501)
Q Consensus 395 v~~l~~~--~~---~~l~~gs~dg~i~iwd~~~-~~~~~~~ 429 (501)
|-.|++- ++ .++++.-.+++..||+.+. ...+..|
T Consensus 259 vEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 259 VEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred ccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 6666653 22 6777777788999999864 3444444
No 466
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.53 E-value=37 Score=32.09 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=13.9
Q ss_pred cEEEEEEcCCCcEEEEEcCC
Q 010784 347 ILHSFSIMPSKSLICTGGIG 366 (501)
Q Consensus 347 ~v~~v~~~~~~~~l~~~~~d 366 (501)
....++|+++|+++++-..+
T Consensus 185 np~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCccceECCCCCEEEEccCC
Confidence 34678888888887765533
No 467
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.50 E-value=32 Score=32.53 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=30.5
Q ss_pred CCCceEEeeCCcEEEeecC-----------Cee-eEEEEecccc-cc--cceecccCCcceeEEEeec
Q 010784 111 KPHDHILLDNNDIFSTQGS-----------SIQ-NIKIDNFLSE-SY--YRATLSDHKARITCMRLFP 163 (501)
Q Consensus 111 ~~i~~~~~~~~~~~~~~g~-----------~d~-~i~vw~~~~~-~~--~~~~~~~h~~~V~~~~~~~ 163 (501)
..+..|+++++|+++++-. ..+ .|.+.+-..+ .+ ....+...-...+.+++.+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~ 81 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV 81 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec
Confidence 3478899999999887742 122 4555543221 12 2234433344567888877
No 468
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=84.05 E-value=23 Score=36.38 Aligned_cols=149 Identities=9% Similarity=0.034 Sum_probs=87.9
Q ss_pred CEEEEeeCCCcEEEEeccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccc
Q 010784 223 KILASGGEDATVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGM 302 (501)
Q Consensus 223 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 302 (501)
..+..|+.+|.+.++.-..+.. +.............+.++.+++ ..+..|.-||++-.+--..... ........
T Consensus 548 PTic~gtq~ssisissss~~s~--ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gS-wd~ep~~~ 621 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSI--KEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGS-WDGEPNIS 621 (925)
T ss_pred CcccccCccceeEEeeccCCcc--cceeccCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCC-CCCCCccc
Confidence 4677889999999987663221 1112222333345566666653 2455566666665543211100 00000000
Q ss_pred -eecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeecc---CCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCC
Q 010784 303 -TSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAI---CKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQ 377 (501)
Q Consensus 303 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~ 377 (501)
......+....+..+..+.++++.+.++...+......... |...|+++....+|-+++-.+.+.+++++..+..
T Consensus 622 ~~~g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLW 700 (925)
T ss_pred cccCCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccC
Confidence 11223344556667788888899999999988776665554 4567899988877877777776667777666543
No 469
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.97 E-value=47 Score=32.12 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=24.4
Q ss_pred ceeeeEeeccccEEEEeecCCCceEEEeeccCCcc
Q 010784 440 STGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATC 474 (501)
Q Consensus 440 ~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~ 474 (501)
.|..++..+..+.|++.+ .+|.|.+|++..++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~--~~~~Iq~w~l~~~~~ 223 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLT--SDGSIQVWDLGPGGS 223 (422)
T ss_dssp -EEEEEEETTTTEEEEEE--SSE-EEEEEE-SS-E
T ss_pred ceeeEEecCCcCEEEEEe--CCCcEEEEEEeCCCC
Confidence 388888888888999998 669999999986443
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.80 E-value=9.8 Score=31.33 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=24.2
Q ss_pred CeEEEEecCC-------eEEEEecCCCcEEEEeCCC
Q 010784 394 SVTQLHMDPY-------KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 394 ~v~~l~~~~~-------~~l~~gs~dg~i~iwd~~~ 422 (501)
.|.+++|||. -+|++.+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 6889999982 6788888999999998764
No 471
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.44 E-value=36 Score=30.40 Aligned_cols=162 Identities=8% Similarity=-0.004 Sum_probs=100.8
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccC-CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDH-KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
....++++.++|+.+.+.+-.....-.|+=... +++++++.-. -..--.|++.. +|++.++--.+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig-------------~n~fvi~dER~ 149 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIG-------------GNQFVIVDERD 149 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecccccCChhHeEEec-------------CCEEEEEehhc
Confidence 344599999999988887666666555554444 4666665311 22244567766 66777777778
Q ss_pred CceEEec--CC-cee---------eeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeecc
Q 010784 188 HSIRLWW--KG-SCQ---------RCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLY 255 (501)
Q Consensus 188 g~i~vwd--~~-~~~---------~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 255 (501)
+.+.++. .+ ..+ ..........-.++|. +.+..|+.+-+-.-+.|+..+...... ......
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d----~~~~~l~~aKEr~P~~I~~~~~~~~~l---~~~~~~ 222 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD----PVDHRLFVAKERNPIGIFEVTQSPSSL---SVHASL 222 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC----CCCceEEEEEccCCcEEEEEecCCccc---cccccc
Confidence 8888774 11 111 1111225667789995 777788888777788888776543210 011111
Q ss_pred CCC-------CceeEEEEeecCCeEEEEEeCCCeEEEEECCCC
Q 010784 256 GHE-------KPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 256 ~~~-------~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~ 291 (501)
.++ ..|.++.|.+..+.+++-+.+++.+.-.|....
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 121 246677888777888888888888887776544
No 472
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.38 E-value=39 Score=30.84 Aligned_cols=234 Identities=9% Similarity=-0.023 Sum_probs=108.9
Q ss_pred CcEEEeecCCeeeEEEEecccc-cccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEE-eeCCCceEEec----
Q 010784 121 NDIFSTQGSSIQNIKIDNFLSE-SYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVT-SSCDHSIRLWW---- 194 (501)
Q Consensus 121 ~~~~~~~g~~d~~i~vw~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~dg~i~vwd---- 194 (501)
++.+++.|.++|...+. .... ....+. .+...|+++...+ ..+.|++ ++....+++++
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~-------------~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLE-------------ENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEh-------------hhCEEEEEeCCcceEEEEEHHHh
Confidence 33689999999988877 3321 123333 3466899999998 4454444 44444599987
Q ss_pred CCc----e---------eeeccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceee----ccCC
Q 010784 195 KGS----C---------QRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKAT----LYGH 257 (501)
Q Consensus 195 ~~~----~---------~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~ 257 (501)
..+ . ....-.|.....-.... ......+++++...+|.++....... +...... ...-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~---~~~~~~~l~~A~~~~i~l~~~~~~~~--~f~~~k~~~~~~~~~ 150 (302)
T smart00036 76 VEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV---NGKRSLFLCVALQSSVVLLQWYNPLK--KFKLFKSKFLFPLIS 150 (302)
T ss_pred hhhhhccCCccccccccceEeCCcCCceEEEEEE---cCCCcEEEEEEcCCeEEEEEccChhh--hhhhhcccccccCCC
Confidence 210 0 00111333332222222 12223445555666777765443211 0001111 0011
Q ss_pred CCceeEEEEeec-CCeEEEEEeCCCeEEEEECCC--CccccceecccceecCC-Cceeee-cCCCeEEEEeCCcEEEEEc
Q 010784 258 EKPIKLMSVAGH-KSFLLVTISKDSKVRVWDTST--SSAVRSSCCVGMTSVPG-VPVDMK-CHESMLYIASGSSVVTIDL 332 (501)
Q Consensus 258 ~~~v~~l~~~~~-~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~i~~~d~ 332 (501)
..++..+..+++ ....+..|+..+...++++.. ...... .......... .+.++. ..++..+++-.......|.
T Consensus 151 ~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn~ 229 (302)
T smart00036 151 PVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVNL 229 (302)
T ss_pred CccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-cccccccccccCceEEEEECCCeEEEEECcEEEEEeC
Confidence 223333333321 234566666543345555533 111000 0000001111 233332 3344455555555555555
Q ss_pred CCCceE--eeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCC
Q 010784 333 RTMQKV--MTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDA 379 (501)
Q Consensus 333 ~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~ 379 (501)
...+.. ..+ .-.....++++. ..++++-..+.|.++++.+++..
T Consensus 230 ~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~~~~ievr~l~~~~l~ 275 (302)
T smart00036 230 YGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFHDNGIEIRSIKTGELL 275 (302)
T ss_pred CCCccccceEE-EcCCcccEEEEE--CCEEEEEcCCcEEEEECCCCceE
Confidence 431111 111 124455677775 34666666666999999987543
No 473
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.24 E-value=58 Score=33.85 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=50.3
Q ss_pred cCeEEEEecCC-eEEEEecCCCcEEEEeCCC----------ccc---ccccccC---CCCCCCcceeeeEeecc---ccE
Q 010784 393 GSVTQLHMDPY-KIVTGGRDDLRINIWETDT----------GML---ANSLLCN---YPEEADISTGCSAMAVS---GCR 452 (501)
Q Consensus 393 ~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~----------~~~---~~~~~~~---~~~~~~~~v~~~~~s~~---g~~ 452 (501)
-.|..|.++|+ .+++-.+..| |.|-.+.. |+. -+++..+ ....+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46888999999 6666554544 55554431 111 0111100 11234567889999997 478
Q ss_pred EEEeecCCCceEEEeeccCCccce
Q 010784 453 IVTASYGEPGLLQFRDFSNATCPV 476 (501)
Q Consensus 453 l~s~~~d~~g~i~~w~~~~~~~~~ 476 (501)
|++=. .|+.+|+||+.....+.
T Consensus 164 l~vLt--sdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 164 LVVLT--SDNTLRLYDISDPQHPW 185 (717)
T ss_pred EEEEe--cCCEEEEEecCCCCCCe
Confidence 88877 56999999998665543
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.10 E-value=73 Score=33.70 Aligned_cols=183 Identities=12% Similarity=0.087 Sum_probs=102.4
Q ss_pred CCCCceEEEEee---ecCCCCCCEEEEeeCCCcEEEEec------cCCCcc---ccccceeeccC---CCCceeEEEEee
Q 010784 204 GHNGPVSTLSDK---LLGDGSGKILASGGEDATVRLWSL------SSSGKR---GQQALKATLYG---HEKPIKLMSVAG 268 (501)
Q Consensus 204 ~h~~~v~~l~~s---~~~~~~~~~l~sg~~dg~i~iwd~------~~~~~~---~~~~~~~~~~~---~~~~v~~l~~~~ 268 (501)
.-..+|..|+|. ...+....+|++= ....+.|+.. ...... -...++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356788888885 1112223455543 4456677762 111110 01112233321 234667899999
Q ss_pred cCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcE
Q 010784 269 HKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPIL 348 (501)
Q Consensus 269 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 348 (501)
.+...||.....|...||++.......... +.+..... +.| ++|.+ ..+.-
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-----------~~~~~~~~-------gsi-~~d~~----------e~s~w 206 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-----------LRLSRNIS-------GSI-IFDPE----------ELSNW 206 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcc-----------eeeccCCC-------ccc-cCCCc----------ccCcc
Confidence 888899999999999999993222111000 00000000 011 11111 11445
Q ss_pred EEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC---eEEEEecCCCcEEEEeCCC
Q 010784 349 HSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY---KIVTGGRDDLRINIWETDT 422 (501)
Q Consensus 349 ~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~l~~gs~dg~i~iwd~~~ 422 (501)
..+.|.++...|+.++...+.++|+.+.... ..+. .......|..+.-+|. .+++- ....|...++..
T Consensus 207 ~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~---~~l~-~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 207 KRILWVSDSNRLLVCNRSKLMLIDFESNWQT---EYLV-TAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred eeeEecCCCCEEEEEcCCceEEEECCCCCcc---chhc-cCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 6788988888888888888999999987542 1111 2234567888888776 33333 235688888876
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.07 E-value=33 Score=34.79 Aligned_cols=180 Identities=14% Similarity=0.080 Sum_probs=90.1
Q ss_pred cceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEEEEeeCCC
Q 010784 154 ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKILASGGEDA 232 (501)
Q Consensus 154 ~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg 232 (501)
.-++++.-+| .+..++++..||.|++|+ ..+....+-....+-..+.|. +.-|++...|.
T Consensus 15 e~~~aiqshp-------------~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~t------nhgl~~~tsdr 75 (1636)
T KOG3616|consen 15 EFTTAIQSHP-------------GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFT------NHGLVTATSDR 75 (1636)
T ss_pred ceeeeeeecC-------------CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeee------ccceEEEeccc
Confidence 4466777667 789999999999999998 322222222222333445552 22356666777
Q ss_pred cEEEEeccCCCccccccceeeccC-CCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCcee
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYG-HEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVD 311 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 311 (501)
.+.-|.-+.--+ ....+.. ......++...|...+ +.|.--|-|.-+|.--...+..
T Consensus 76 r~la~~~dgvvq-----qqfdyndqsekefss~~cdptaqn--vvgtlcggv~q~dcclrr~i~k--------------- 133 (1636)
T KOG3616|consen 76 RALAWKEDGVVQ-----QQFDYNDQSEKEFSSILCDPTAQN--VVGTLCGGVEQFDCCLRRGILK--------------- 133 (1636)
T ss_pred hhheeeccCcch-----hhccccchhhhhccceecCchhhh--hhhhhccceeeehHHHHhHHHh---------------
Confidence 787886543211 0111111 1223344444443222 2344445555555321111000
Q ss_pred eecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCC
Q 010784 312 MKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQ 377 (501)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~ 377 (501)
+.-.+..+.-+.+.+-|+.++..........-.|..+.+....++++.-....|.+=|+.+.+
T Consensus 134 ---nkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 134 ---NKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred ---ccceeEEeccceeeeecccCCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccch
Confidence 000111222335566666666554443322334455555555666666666667777877654
No 476
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.68 E-value=38 Score=30.22 Aligned_cols=205 Identities=11% Similarity=0.080 Sum_probs=113.9
Q ss_pred ccCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC-CCceeEEEEeecCCeEEEEEeCC
Q 010784 202 FKGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH-EKPIKLMSVAGHKSFLLVTISKD 280 (501)
Q Consensus 202 ~~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~l~s~s~d 280 (501)
+.+-...+.++.|+ |+.+.|++......-.|+=-..++ ++.++.-. -..-..|.+.. ++.+.++--.+
T Consensus 81 i~g~~~nvS~LTyn----p~~rtLFav~n~p~~iVElt~~Gd------lirtiPL~g~~DpE~Ieyig-~n~fvi~dER~ 149 (316)
T COG3204 81 ILGETANVSSLTYN----PDTRTLFAVTNKPAAIVELTKEGD------LIRTIPLTGFSDPETIEYIG-GNQFVIVDERD 149 (316)
T ss_pred cccccccccceeeC----CCcceEEEecCCCceEEEEecCCc------eEEEecccccCChhHeEEec-CCEEEEEehhc
Confidence 34556669999996 777888877766666666444444 34443211 12224566763 56666666678
Q ss_pred CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCc-eEeeeccCCCcEEEEEEcCCCcE
Q 010784 281 SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQ-KVMTPAICKPILHSFSIMPSKSL 359 (501)
Q Consensus 281 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~v~~~~~~~~ 359 (501)
+.+.++.+......... .+.+ .+......+.....++|.|.++.
T Consensus 150 ~~l~~~~vd~~t~~~~~-----------------------------------~~~~i~L~~~~k~N~GfEGlA~d~~~~~ 194 (316)
T COG3204 150 RALYLFTVDADTTVISA-----------------------------------KVQKIPLGTTNKKNKGFEGLAWDPVDHR 194 (316)
T ss_pred ceEEEEEEcCCccEEec-----------------------------------cceEEeccccCCCCcCceeeecCCCCce
Confidence 88888877654321110 0000 00111112556788999999888
Q ss_pred EEEEcCCc-EEEEecCCCCCCCCCCCcccccCc-------ccCeEEEEecCC--eEEEEecCCCcEEEEeCCCccccccc
Q 010784 360 ICTGGIGK-AMTWDIRRSQDAVKPQPMAELDGH-------VGSVTQLHMDPY--KIVTGGRDDLRINIWETDTGMLANSL 429 (501)
Q Consensus 360 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~--~~l~~gs~dg~i~iwd~~~~~~~~~~ 429 (501)
|..+-+.. +.||........ -.+.....+ -..|.++.+++. .+++-+..++.+.-.|.. |..+..+
T Consensus 195 l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 195 LFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred EEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 88888777 888877644311 001111111 234677888865 666666688888777764 4444443
Q ss_pred ccCCC-CCCC---cceeeeEeeccccEEEEe
Q 010784 430 LCNYP-EEAD---ISTGCSAMAVSGCRIVTA 456 (501)
Q Consensus 430 ~~~~~-~~~~---~~v~~~~~s~~g~~l~s~ 456 (501)
..... .+-. -.-.+++...+|..-+++
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred EeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 22110 0111 123456777777655444
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.42 E-value=5.1 Score=23.03 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=19.4
Q ss_pred CcceeeeEeeccccEEEEeecCCC--ceEEEe
Q 010784 438 DISTGCSAMAVSGCRIVTASYGEP--GLLQFR 467 (501)
Q Consensus 438 ~~~v~~~~~s~~g~~l~s~~~d~~--g~i~~w 467 (501)
........|||||+.|+-++. .+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~-~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSN-RNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEE-CT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEec-CCCCCCcCEE
Confidence 345677899999999988774 34 555444
No 478
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=80.89 E-value=68 Score=32.60 Aligned_cols=170 Identities=9% Similarity=0.021 Sum_probs=92.7
Q ss_pred CcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEecC--Ccee--eecc-CCCCceEEEEeeecCC--CCCCEE
Q 010784 153 KARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWWK--GSCQ--RCFK-GHNGPVSTLSDKLLGD--GSGKIL 225 (501)
Q Consensus 153 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~--~~~~-~h~~~v~~l~~s~~~~--~~~~~l 225 (501)
.+.|-.+.|.+ ++..+++...+|.|.+||. +... ..+. .+...+.--.|..... ....++
T Consensus 129 ~~kvv~Ik~~~-------------~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~l 195 (670)
T PF10395_consen 129 DDKVVGIKFSS-------------DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLL 195 (670)
T ss_pred ccceEEEEEec-------------CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceE
Confidence 56788888886 7899999999999999983 1111 1121 1222221112221111 123444
Q ss_pred EEeeC-C---CcEEEEeccCCCccccccceeecc---CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcccccee
Q 010784 226 ASGGE-D---ATVRLWSLSSSGKRGQQALKATLY---GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSC 298 (501)
Q Consensus 226 ~sg~~-d---g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 298 (501)
++-+. + -..+++.+..... .+..+. .+........|....|.+.-- .+++|.+|++...+......
T Consensus 196 l~v~~~~~~k~~ykL~~l~~~~~-----~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 196 LTVSQLSNSKLSYKLISLSNESS-----SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred EEEEEcCCCcEEEEEEEeccCCc-----ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence 44443 2 2467777722111 122221 122222333444445554433 67899999998876655544
Q ss_pred cccceecC-CCceee-ecCCCeEEEEeCCcEEEEEcCCCceEeeec
Q 010784 299 CVGMTSVP-GVPVDM-KCHESMLYIASGSSVVTIDLRTMQKVMTPA 342 (501)
Q Consensus 299 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 342 (501)
........ ...+++ ..+++.++++.++.|++.|+.-...+..+.
T Consensus 269 l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 269 LPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred echhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 33233222 334444 567788888889999999987665554443
No 479
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=80.55 E-value=44 Score=30.22 Aligned_cols=198 Identities=11% Similarity=0.079 Sum_probs=91.1
Q ss_pred cEEEEeccCCCccccccceeeccCCCCceeEEEEeecCC-----eEEEEEeCCCeEEEEECCCCccccceecccceecCC
Q 010784 233 TVRLWSLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKS-----FLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPG 307 (501)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 307 (501)
.|.+||+.+++......+........+.+..+.+...++ ...++=+..+.|.|+|+.+++.-+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-------- 106 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-------- 106 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC--------
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC--------
Confidence 456666666552111111111111345677788775332 2344444556899999999864322111
Q ss_pred CceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcC---CCcEEEEEcCCcEEEEecCCCCCCCCC--
Q 010784 308 VPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMP---SKSLICTGGIGKAMTWDIRRSQDAVKP-- 382 (501)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~~~d~i~iwd~~~~~~~~~~-- 382 (501)
.+...+....+..++.. +. ....+..++.+| +++.|.-..-.+-++|.+.+.-.....
T Consensus 107 ---~~~~~p~~~~~~i~g~~-------------~~-~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~ 169 (287)
T PF03022_consen 107 ---SFSPDPDAGPFTIGGES-------------FQ-WPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLS 169 (287)
T ss_dssp ---GCTTS-SSEEEEETTEE-------------EE-ETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--
T ss_pred ---CcceeccccceeccCce-------------Ee-cCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccc
Confidence 11122221112222211 11 123377888876 667777666444445544331110000
Q ss_pred ------CCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcc---cccccccCCCCCCCcceeeeEeec--cc
Q 010784 383 ------QPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGM---LANSLLCNYPEEADISTGCSAMAV--SG 450 (501)
Q Consensus 383 ------~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~--~g 450 (501)
..+..+.........++++++ .++.+--..+.|..|+....- ....+.. ....-....++.+.+ +|
T Consensus 170 ~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g 247 (287)
T PF03022_consen 170 DAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDG 247 (287)
T ss_dssp HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS
T ss_pred ccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCc
Confidence 001111111134566788888 777777788999999987521 1222210 011134567777877 66
Q ss_pred cEEEEee
Q 010784 451 CRIVTAS 457 (501)
Q Consensus 451 ~~l~s~~ 457 (501)
.+.+...
T Consensus 248 ~L~v~sn 254 (287)
T PF03022_consen 248 YLWVLSN 254 (287)
T ss_dssp -EEEEE-
T ss_pred eEEEEEC
Confidence 5555543
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.13 E-value=45 Score=30.00 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=60.5
Q ss_pred cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEc------CCc-EEEEecCCCCCCCCCCCcccccC-----ccc
Q 010784 326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGG------IGK-AMTWDIRRSQDAVKPQPMAELDG-----HVG 393 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~------~d~-i~iwd~~~~~~~~~~~~~~~~~~-----h~~ 393 (501)
.+.+||..+.+-...-.+-.+.|+++.|..+.+++++|. ... +..||..+..- ..+.+ -.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-------~~~~~~~s~~ipg 89 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-------SSLGGGSSNSIPG 89 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-------eecCCcccccCCC
Confidence 688999887766555555678899999997788888776 233 88899887542 22222 236
Q ss_pred CeEEEEecC---CeEEEEec-CCC--cEEEEeCCCcccc
Q 010784 394 SVTQLHMDP---YKIVTGGR-DDL--RINIWETDTGMLA 426 (501)
Q Consensus 394 ~v~~l~~~~---~~~l~~gs-~dg--~i~iwd~~~~~~~ 426 (501)
+|+.+.+.. +.+.++|. .+| .|..||=.+...+
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 788887733 26665553 344 3666665444433
No 481
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.49 E-value=8.4 Score=38.75 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCCEEEEeeCCCcEEEEeccCCC---ccc------cc---cceeec--------cCCCCceeEEEEee---cCCeEEEEE
Q 010784 221 SGKILASGGEDATVRLWSLSSSG---KRG------QQ---ALKATL--------YGHEKPIKLMSVAG---HKSFLLVTI 277 (501)
Q Consensus 221 ~~~~l~sg~~dg~i~iwd~~~~~---~~~------~~---~~~~~~--------~~~~~~v~~l~~~~---~~~~~l~s~ 277 (501)
+...++.+..||.+......... ... .. ..+..+ ......+..+++.. .+..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 55677777888888887776511 100 00 000000 01122344445543 256789999
Q ss_pred eCCCeEEEEECCCCccccce
Q 010784 278 SKDSKVRVWDTSTSSAVRSS 297 (501)
Q Consensus 278 s~dg~v~vwd~~~~~~~~~~ 297 (501)
+.|+.+|+||+.+++.+...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999875543
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.12 E-value=28 Score=27.00 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=66.0
Q ss_pred cCcEEEEeeCCCceEEec-C-C--------ceeeeccCCCCceEEEEeeecC-CCCCCEEEEeeCCCcEEEEeccCCCcc
Q 010784 177 TENVLVTSSCDHSIRLWW-K-G--------SCQRCFKGHNGPVSTLSDKLLG-DGSGKILASGGEDATVRLWSLSSSGKR 245 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~-~--------~~~~~~~~h~~~v~~l~~s~~~-~~~~~~l~sg~~dg~i~iwd~~~~~~~ 245 (501)
....|+.+..-|.|.|.+ . . ..+..+. -...|++++-.+.. +.....|+.|+. ..+..||+..+..
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d- 85 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSD- 85 (136)
T ss_pred CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCch-
Confidence 456788888889999997 1 1 1223333 45678888765432 344567777765 5899999998753
Q ss_pred ccccceeeccCCCCceeEEEEeec--CCeEEEEEeCCCeEEEEECCCC
Q 010784 246 GQQALKATLYGHEKPIKLMSVAGH--KSFLLVTISKDSKVRVWDTSTS 291 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~s~s~dg~v~vwd~~~~ 291 (501)
..++.-...|.++.+-.- ...-++..+.+..|.-||.+..
T Consensus 86 ------~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 86 ------LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ------hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 333444566777766321 1233445555677888886654
No 483
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=78.15 E-value=1.3e+02 Score=34.18 Aligned_cols=143 Identities=12% Similarity=-0.044 Sum_probs=83.8
Q ss_pred ecCCCeEEEEeCCcEEEEEcCCCceE----------------eeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCC
Q 010784 313 KCHESMLYIASGSSVVTIDLRTMQKV----------------MTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRS 376 (501)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~~~~~----------------~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~ 376 (501)
.....+.+...++.|.-||-.+..-. .-+....+.|..+.+++...-++-|.+..+.+=-.++.
T Consensus 611 dl~r~G~v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~ 690 (1774)
T PF11725_consen 611 DLGRAGLVGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNK 690 (1774)
T ss_pred ccccccceeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCC
Confidence 34444556666789999987543210 01111356777888877655555544433332222222
Q ss_pred CCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEE
Q 010784 377 QDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVT 455 (501)
Q Consensus 377 ~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 455 (501)
-.. ...+.-+. ...|+++++-.+ ++++. ...|.+.... ..+.++.--. .+-.+.|..+++....++.+.
T Consensus 691 ~e~--G~~l~Gl~--~~~i~a~Avv~~~~fval-d~qg~lt~h~-k~g~p~~l~~----~gl~G~ik~l~lD~~~nL~Al 760 (1774)
T PF11725_consen 691 VEL--GDALEGLE--DRVITAFAVVNDNKFVAL-DDQGDLTAHQ-KPGRPVPLSR----PGLSGEIKDLALDEKQNLYAL 760 (1774)
T ss_pred CCC--CccccCCC--cCcceeEEEEcCCceEEe-ccCCcccccc-CCCCCccCCC----CCCCcchhheeeccccceeEe
Confidence 111 22333333 457889998888 66665 6999999998 6666432221 344678999999888776666
Q ss_pred eecCCCceEEEee
Q 010784 456 ASYGEPGLLQFRD 468 (501)
Q Consensus 456 ~~~d~~g~i~~w~ 468 (501)
. .+|.++..+
T Consensus 761 t---~~G~Lf~~~ 770 (1774)
T PF11725_consen 761 T---STGELFRLP 770 (1774)
T ss_pred c---CCCceeecC
Confidence 5 346666543
No 484
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=78.10 E-value=2.2 Score=31.06 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=22.9
Q ss_pred cccccccHHHHHHHHhcCChhhhHHH
Q 010784 18 TAIADLNEDAVAHCALNLSLQDISNM 43 (501)
Q Consensus 18 ~~~~~Lp~e~~~~i~~~L~~~~l~~~ 43 (501)
.....||.|+-..|++||+-.||..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 45667999999999999999999875
No 485
>PRK13684 Ycf48-like protein; Provisional
Probab=78.10 E-value=59 Score=30.24 Aligned_cols=70 Identities=7% Similarity=-0.086 Sum_probs=40.1
Q ss_pred CcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccCcccCeEEEEecCC-eEEEEecCCCcEEEEeC
Q 010784 346 PILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWET 420 (501)
Q Consensus 346 ~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~ 420 (501)
..+.++.+.+++..+++|..+.+. .....++. .+.+.....-....+.+.+..+ +.+++| ..|.|--|+-
T Consensus 260 ~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~t---W~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 260 YGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKT---WEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred cceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCC---CeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 346788899888877777655433 33333322 1111111111235677776655 777776 8888887763
No 486
>PLN02153 epithiospecifier protein
Probab=77.96 E-value=60 Score=30.25 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=16.1
Q ss_pred CCeEEEEEeCC-----CeEEEEECCCCcc
Q 010784 270 KSFLLVTISKD-----SKVRVWDTSTSSA 293 (501)
Q Consensus 270 ~~~~l~s~s~d-----g~v~vwd~~~~~~ 293 (501)
++.+++.|+.+ ..+.+||+.+.+-
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEE
Confidence 56677777753 2477888877643
No 487
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=77.40 E-value=11 Score=23.96 Aligned_cols=46 Identities=7% Similarity=-0.037 Sum_probs=33.4
Q ss_pred eeeeEeeccccEEEEeecC---CCceEEEeeccCCccceeecCCCCcee
Q 010784 441 TGCSAMAVSGCRIVTASYG---EPGLLQFRDFSNATCPVLKHEVQNDSK 486 (501)
Q Consensus 441 v~~~~~s~~g~~l~s~~~d---~~g~i~~w~~~~~~~~~~s~~~d~~~~ 486 (501)
...++..|||+.|++|... .+....+..+..++.+=.+-+.+|.+.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~ 51 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVT 51 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEE
Confidence 5678899999999999642 234667888888777666666666544
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.12 E-value=50 Score=28.91 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=67.7
Q ss_pred cEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcC--Cc--EEEEecCCCCCCCCCC-CcccccCcccCeEEEEe
Q 010784 326 SVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGI--GK--AMTWDIRRSQDAVKPQ-PMAELDGHVGSVTQLHM 400 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--d~--i~iwd~~~~~~~~~~~-~~~~~~~h~~~v~~l~~ 400 (501)
.-.+||+.+.+.............+-.+.+||+++.+|++ +. +++++........... ....+.. ..+--+...
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceE
Confidence 3457888876553222222233344467789999999983 22 8898865511100000 0011111 122223344
Q ss_pred cCC-eEEEE-ecCCCcEEEEeCCCc-cccccc--ccC-CCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCc
Q 010784 401 DPY-KIVTG-GRDDLRINIWETDTG-MLANSL--LCN-YPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNAT 473 (501)
Q Consensus 401 ~~~-~~l~~-gs~dg~i~iwd~~~~-~~~~~~--~~~-~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~ 473 (501)
-|+ ++++. |+..-+..+|.-... .....+ ... ........-.-+...|+|++++.+. .+. .+||.....
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--RGS--IIYDYKTNT 200 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--CCc--EEEeCCCCe
Confidence 456 55554 444444566654221 111111 000 0001112223466789999999987 323 445665553
No 489
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=75.32 E-value=91 Score=31.02 Aligned_cols=252 Identities=15% Similarity=0.116 Sum_probs=114.1
Q ss_pred cCcEEEEeeCCCceEEec---CCce-eeeccCC-CCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccce
Q 010784 177 TENVLVTSSCDHSIRLWW---KGSC-QRCFKGH-NGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALK 251 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd---~~~~-~~~~~~h-~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 251 (501)
++..++-+..+|.+..-. .+.. ....-+. ....+++.+. ...+.+|+.|+.-|.=.++.+.... ...+
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l---~~g~d~lf~gs~~gds~l~~~~~~~----l~~~ 293 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYL---KNGGDYLFVGSEFGDSQLLQISLSN----LEVL 293 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEE---STT--EEEEEESSS-EEEEEEESES----EEEE
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEE---cCCCEEEEEEEecCCcEEEEEeCCC----cEEE
Confidence 678888899999988775 2211 1111122 4455667664 1113488888876655555555332 1233
Q ss_pred eeccCCCCceeEEEEeec---CCe------EEEEEe---CCCeEEEEECCCCccccceecccceecC--CCceeeecC--
Q 010784 252 ATLYGHEKPIKLMSVAGH---KSF------LLVTIS---KDSKVRVWDTSTSSAVRSSCCVGMTSVP--GVPVDMKCH-- 315 (501)
Q Consensus 252 ~~~~~~~~~v~~l~~~~~---~~~------~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-- 315 (501)
..+. .-+||.++++... ... .+++++ .+|.+++..- +-... .......... ...+.+...
T Consensus 294 ~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~-~~~~~~~~l~~v~~iW~l~~~~~ 369 (504)
T PF10433_consen 294 DSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIE-GLELASSELPGVTGIWTLKLSSS 369 (504)
T ss_dssp EEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE---EEEEEEESTEEEEEEE-SSSS
T ss_pred Eecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCce-eeeeeccCCCCceEEEEeeecCC
Confidence 3443 4578888888632 121 555554 4678887742 21111 0011111111 122233222
Q ss_pred -CCeEEEEeCCcEEEEEcC---CCceEee-----eccCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcc
Q 010784 316 -ESMLYIASGSSVVTIDLR---TMQKVMT-----PAICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMA 386 (501)
Q Consensus 316 -~~~~~~~~~~~i~~~d~~---~~~~~~~-----~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~ 386 (501)
...++++....-.++.+. ..+.+.. +......+.+-.+. +..++=....+|++.+....+.. .
T Consensus 370 ~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~------~ 441 (504)
T PF10433_consen 370 DHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLT------Q 441 (504)
T ss_dssp SBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEE------E
T ss_pred CceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEE------E
Confidence 234444445555555553 2333211 11112233333332 55666666666888887664432 2
Q ss_pred ccc-CcccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeec
Q 010784 387 ELD-GHVGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAV 448 (501)
Q Consensus 387 ~~~-~h~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 448 (501)
... .....|.+.+.+...++++. .++.+.++.+....................|.++..+|
T Consensus 442 ~w~~~~~~~I~~a~~~~~~v~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 442 EWKPPAGSIIVAASINDPQVLVAL-SGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEE-TTS---SEEEESSSEEEEEE--TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEeCCCCCeEEEEEECCCEEEEEE-eCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 221 13456777777766666654 67889999887655432221110001245677777665
No 490
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=74.84 E-value=95 Score=30.98 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEeeccCCccceeec
Q 010784 412 DLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSNATCPVLKH 479 (501)
Q Consensus 412 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~~~~~~~s~ 479 (501)
.+.|.+.| .+.+.+..+.. -+....|.++.|--|.-+++|-- .---+.+.|++++.++.+.|
T Consensus 303 ~N~lyVLD-~~L~~vG~l~~---la~gE~IysvRF~Gd~~Y~VTFr--qvDPLfviDLsdP~~P~vlG 364 (521)
T PF09826_consen 303 SNNLYVLD-EDLKIVGSLEG---LAPGERIYSVRFMGDRAYLVTFR--QVDPLFVIDLSDPANPKVLG 364 (521)
T ss_pred eEEEEEEC-CCCcEeEEccc---cCCCceEEEEEEeCCeEEEEEEe--ecCceEEEECCCCCCCceee
Confidence 34678887 66777777753 34568899999999999999875 45689999999888775543
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.70 E-value=69 Score=28.84 Aligned_cols=91 Identities=12% Similarity=0.205 Sum_probs=53.4
Q ss_pred eeeEEEEecccccccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEee------CCCceEEec-CCceeeecc
Q 010784 131 IQNIKIDNFLSESYYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSS------CDHSIRLWW-KGSCQRCFK 203 (501)
Q Consensus 131 d~~i~vw~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------~dg~i~vwd-~~~~~~~~~ 203 (501)
-..+.+||..+. +-..--.+-.+.|++|.|.. +.++++.|. ....+..|| .......+.
T Consensus 15 C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~-------------~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 15 CPGLCLYDTDNS-QWSSPGNGISGTVTDLQWAS-------------NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred CCEEEEEECCCC-EeecCCCCceEEEEEEEEec-------------CCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 356888997763 33333345567899999985 456666664 345677888 444444444
Q ss_pred CC-----CCceEEEEeeecCCCCCC-EEEEee-CCCc--EEEEe
Q 010784 204 GH-----NGPVSTLSDKLLGDGSGK-ILASGG-EDAT--VRLWS 238 (501)
Q Consensus 204 ~h-----~~~v~~l~~s~~~~~~~~-~l~sg~-~dg~--i~iwd 238 (501)
+- .++|..+.+. ..++. +.+.|. .+|. |..||
T Consensus 81 ~~~s~~ipgpv~a~~~~---~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFI---SNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred CcccccCCCcEEEEEee---ccCCceEEEeceecCCCceEEEEc
Confidence 42 3778888764 23443 444443 3443 44454
No 492
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=73.32 E-value=1e+02 Score=30.56 Aligned_cols=312 Identities=13% Similarity=0.001 Sum_probs=146.5
Q ss_pred cCCCCceEEeeCCcEEEeecCCeeeEEEEecccccccceecccCC-cceeEEEeeccCcCcccccCCCCcCcEEEEeeCC
Q 010784 109 VAKPHDHILLDNNDIFSTQGSSIQNIKIDNFLSESYYRATLSDHK-ARITCMRLFPLHETSLFRSEPQRTENVLVTSSCD 187 (501)
Q Consensus 109 ~~~~i~~~~~~~~~~~~~~g~~d~~i~vw~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 187 (501)
...++..+.++.+|.+.+ |+.+|.. .+|..++ +....-.... .+|..+.-.- +..|..|+.+
T Consensus 163 ~d~~V~aLv~D~~g~lWv-gT~dGL~-~fd~~~g-kalql~s~~~dk~I~al~~d~--------------qg~LWVGTdq 225 (671)
T COG3292 163 KDTPVVALVFDANGRLWV-GTPDGLS-YFDAGRG-KALQLASPPLDKAINALIADV--------------QGRLWVGTDQ 225 (671)
T ss_pred cCccceeeeeeccCcEEE-ecCCcce-EEccccc-eEEEcCCCcchhhHHHHHHHh--------------cCcEEEEecc
Confidence 344588888888886654 5555544 3454443 3333322222 4555555443 3456777766
Q ss_pred CceEEec-CCceeeec--cCCCCceEEEEeeecCCCCCCEEEEeeCCCcEEEEeccCCCccccccceeeccCC--CCcee
Q 010784 188 HSIRLWW-KGSCQRCF--KGHNGPVSTLSDKLLGDGSGKILASGGEDATVRLWSLSSSGKRGQQALKATLYGH--EKPIK 262 (501)
Q Consensus 188 g~i~vwd-~~~~~~~~--~~h~~~v~~l~~s~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~ 262 (501)
| |.+.+ .+...... .-..+.|..+.- +. ...+-.|+.+|..+.- +..... .....+.| -..|.
T Consensus 226 G-v~~~e~~G~~~sn~~~~lp~~~I~ll~q----D~-qG~lWiGTenGl~r~~-l~rq~L-----q~~~~~~~l~~S~vn 293 (671)
T COG3292 226 G-VYLQEAEGWRASNWGPMLPSGNILLLVQ----DA-QGELWIGTENGLWRTR-LPRQGL-----QIPLSKMHLGVSTVN 293 (671)
T ss_pred c-eEEEchhhccccccCCCCcchheeeeec----cc-CCCEEEeecccceeEe-cCCCCc-----cccccccCCcccccc
Confidence 6 55655 33222111 112334444432 22 3355667776655432 222221 11111222 23344
Q ss_pred EEEEeecCCeEEEEEeCCCeEEEEECCCCccccceecccceecCCCceee-ecCC-----CeEEEEeCCcEEEEEcCCCc
Q 010784 263 LMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDM-KCHE-----SMLYIASGSSVVTIDLRTMQ 336 (501)
Q Consensus 263 ~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~i~~~d~~~~~ 336 (501)
++... ...-+.+++.+|.+++-+-.-. .... ....++..... ...+ ......+.+...+-+-.++.
T Consensus 294 sL~~D--~dGsLWv~t~~giv~~~~a~w~---~ma~---in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~ 365 (671)
T COG3292 294 SLWLD--TDGSLWVGTYGGIVRYLTADWK---RMAV---INDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGE 365 (671)
T ss_pred ceeec--cCCCEeeeccCceEEEecchhh---heee---eecCCCchhhhhccCchhcccceeeccccceEEEecCCCCc
Confidence 44444 2334667777776655432110 0000 00001111000 0000 00000011123333333444
Q ss_pred eEeeec-cCCCcEEEEEEcCCCcEEEEEcCCcEEEEecCCCCCCCCCCCcccccC-cccCeEEEEecCC-eEEEEecCCC
Q 010784 337 KVMTPA-ICKPILHSFSIMPSKSLICTGGIGKAMTWDIRRSQDAVKPQPMAELDG-HVGSVTQLHMDPY-KIVTGGRDDL 413 (501)
Q Consensus 337 ~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~-~~l~~gs~dg 413 (501)
.+.... .-...|+.+.+..+|.+-+....+++..|+..+.-. ......+ ..+.|..+.-.|+ .+.. |+.+|
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~a-----vlde~agl~ss~V~aived~dnsLWI-GTs~G 439 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWA-----VLDEDAGLPSSEVSAIVEDPDNSLWI-GTSGG 439 (671)
T ss_pred EEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCccc-----ccccccCCcccceeeeeecCCCCEEE-eccCC
Confidence 433321 123456666676656555555566788888777211 1122221 2567888888888 6444 45777
Q ss_pred cEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEEee
Q 010784 414 RINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQFRD 468 (501)
Q Consensus 414 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~ 468 (501)
.++. +.+.++....+.........+.+..+.+.|+|++-+.++. -|..|+
T Consensus 440 lvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~----gva~~~ 489 (671)
T COG3292 440 LVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGS----GVAAWE 489 (671)
T ss_pred eEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEecc----eeeeec
Confidence 5443 5566666655544433344566888899999986665542 345555
No 493
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=73.17 E-value=1.1e+02 Score=31.12 Aligned_cols=248 Identities=10% Similarity=0.050 Sum_probs=119.0
Q ss_pred cCcEEEEeeCCCceEEe--c-CCceeeecc-CCCCceEEEEeeecCCCCCCEEEEeeCC-CcEEEEeccCCCc-------
Q 010784 177 TENVLVTSSCDHSIRLW--W-KGSCQRCFK-GHNGPVSTLSDKLLGDGSGKILASGGED-ATVRLWSLSSSGK------- 244 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vw--d-~~~~~~~~~-~h~~~v~~l~~s~~~~~~~~~l~sg~~d-g~i~iwd~~~~~~------- 244 (501)
+.+.+-.|=....|.-| + +.+.+..+. ..+..|.|+...- .+....+.+.|-.+ +.-++-.+..+..
T Consensus 38 ~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~-~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~ 116 (670)
T PF10395_consen 38 DSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLE-KSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTV 116 (670)
T ss_pred CCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEe-cCCCcEEEEEEEeeCCeeEEEEEEccCcccccccc
Confidence 55665555444444433 3 555555543 2455677777531 11112344455333 3345444443300
Q ss_pred cccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCccccc--eecccce--ecCCCceeee--cCCCe
Q 010784 245 RGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSAVRS--SCCVGMT--SVPGVPVDMK--CHESM 318 (501)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~~~~~ 318 (501)
..+......++ -...|..+.+.. ++..+++...+|.|.+||...+..... ....... .....+.... ...+.
T Consensus 117 ~~e~~~~~~~k-l~~kvv~Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ 194 (670)
T PF10395_consen 117 NSETTNEFELK-LDDKVVGIKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDL 194 (670)
T ss_pred CccccceEEEE-cccceEEEEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCce
Confidence 00000111222 356788899985 778899999999999999933322111 1111111 1111111111 12344
Q ss_pred EEEEeC--C---cEEEEEc-CCCceEeeec---cCCCcEEEEEEcC-CCcEEEEEcCCcEEEEecCCCCCCCCCCCcccc
Q 010784 319 LYIASG--S---SVVTIDL-RTMQKVMTPA---ICKPILHSFSIMP-SKSLICTGGIGKAMTWDIRRSQDAVKPQPMAEL 388 (501)
Q Consensus 319 ~~~~~~--~---~i~~~d~-~~~~~~~~~~---~~~~~v~~v~~~~-~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~ 388 (501)
+++.+. + ..+++.+ .....+..+. .+........|.. +|.+..- ..+.|.+|++...+.......-.-+
T Consensus 195 ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii 273 (670)
T PF10395_consen 195 LLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSII 273 (670)
T ss_pred EEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhh
Confidence 444443 2 5666776 1122222222 1222222233332 4544433 4444999999876432000000011
Q ss_pred cCc-ccCeEEEEecCCeEEEEecCCCcEEEEeCCCcccccccc
Q 010784 389 DGH-VGSVTQLHMDPYKIVTGGRDDLRINIWETDTGMLANSLL 430 (501)
Q Consensus 389 ~~h-~~~v~~l~~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~ 430 (501)
... ...|.-...++++++.+ .++.|++.|+.-...+.++.
T Consensus 274 ~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 274 DKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhhhhh
Confidence 111 22333334566688887 57789999998777777765
No 494
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=73.16 E-value=14 Score=26.06 Aligned_cols=32 Identities=9% Similarity=-0.099 Sum_probs=25.7
Q ss_pred cceeeeEeeccccEEEEeecCCCceEEEeeccC
Q 010784 439 ISTGCSAMAVSGCRIVTASYGEPGLLQFRDFSN 471 (501)
Q Consensus 439 ~~v~~~~~s~~g~~l~s~~~d~~g~i~~w~~~~ 471 (501)
..-+++.++|++++|.+++. ..+.|+++....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~-~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASS-LAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEec-cCCeEEEEEecC
Confidence 34578899999999998876 678999987653
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=72.36 E-value=90 Score=29.61 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=15.6
Q ss_pred CCeEEEEEeCCC-----------eEEEEECCCCcc
Q 010784 270 KSFLLVTISKDS-----------KVRVWDTSTSSA 293 (501)
Q Consensus 270 ~~~~l~s~s~dg-----------~v~vwd~~~~~~ 293 (501)
++.+++.|+... .+..||..+.+.
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W 118 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW 118 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEE
Confidence 566777776532 467788877643
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=71.51 E-value=1.5e+02 Score=31.82 Aligned_cols=135 Identities=13% Similarity=0.194 Sum_probs=71.5
Q ss_pred cEEEEEcCCCceEeeeccCC----CcEEEEEEcCCCc--EEEEEcC-----------Cc-EEEEecCCCCCCCCCCCccc
Q 010784 326 SVVTIDLRTMQKVMTPAICK----PILHSFSIMPSKS--LICTGGI-----------GK-AMTWDIRRSQDAVKPQPMAE 387 (501)
Q Consensus 326 ~i~~~d~~~~~~~~~~~~~~----~~v~~v~~~~~~~--~l~~~~~-----------d~-i~iwd~~~~~~~~~~~~~~~ 387 (501)
.|.++|..+++.+..+.... ..+..+.|+..+. ++++|.. ++ ++.|++-..... .+.++.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~--lellh~ 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK--LELLHK 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce--eeeeec
Confidence 58888888887765554322 2356666665432 4444431 23 666665443221 111121
Q ss_pred ccCcccCeEEEEecCC-eEEEEecCCCcEEEEeCCCcccccccccCCCCCCCcceeeeEeeccccEEEEeecCCCceEEE
Q 010784 388 LDGHVGSVTQLHMDPY-KIVTGGRDDLRINIWETDTGMLANSLLCNYPEEADISTGCSAMAVSGCRIVTASYGEPGLLQF 466 (501)
Q Consensus 388 ~~~h~~~v~~l~~~~~-~~l~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~g~i~~ 466 (501)
.. -.+.|.++ .|. ..+.+| ....+++||+...++++...... ....|+.+.+ .+..|++|.. .-.+++
T Consensus 932 T~-~~~~v~Ai--~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~---~p~~Is~iqt--~~~RI~VgD~--qeSV~~ 1000 (1205)
T KOG1898|consen 932 TE-IPGPVGAI--CPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKF---IPNRISSIQT--YGARIVVGDI--QESVHF 1000 (1205)
T ss_pred cC-CCccceEE--eccCCEEEEe-cccEEEEeeCChHHHHhhhhhcc---CceEEEEEee--cceEEEEeec--cceEEE
Confidence 11 13344444 555 344443 56789999999888877764321 1334444444 5667777763 345555
Q ss_pred eeccCCc
Q 010784 467 RDFSNAT 473 (501)
Q Consensus 467 w~~~~~~ 473 (501)
+.+...+
T Consensus 1001 ~~y~~~~ 1007 (1205)
T KOG1898|consen 1001 VRYRRED 1007 (1205)
T ss_pred EEEecCC
Confidence 5544433
No 497
>PLN02153 epithiospecifier protein
Probab=71.39 E-value=89 Score=29.12 Aligned_cols=68 Identities=18% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCeEEEEEeCC-------CeEEEEECCCCccccceecccceecCCCceeeecCCCeEEEEeC-------CcEEEEEcCCC
Q 010784 270 KSFLLVTISKD-------SKVRVWDTSTSSAVRSSCCVGMTSVPGVPVDMKCHESMLYIASG-------SSVVTIDLRTM 335 (501)
Q Consensus 270 ~~~~l~s~s~d-------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~ 335 (501)
++.+++.|+.+ ..+.+||+.+.+................-..+...++.+++..| ..+.+||+++.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 45666766653 25778888776432111000000000001223333455555544 15788888765
Q ss_pred ce
Q 010784 336 QK 337 (501)
Q Consensus 336 ~~ 337 (501)
+-
T Consensus 112 ~W 113 (341)
T PLN02153 112 EW 113 (341)
T ss_pred EE
Confidence 43
No 498
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=71.37 E-value=1 Score=42.40 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=66.6
Q ss_pred cCcEEEEeeCCCceEEec-CCceeeeccCCCCceEEEEeeecCCCCCCEE-EEeeCCCcEEEEeccCCCccccccceeec
Q 010784 177 TENVLVTSSCDHSIRLWW-KGSCQRCFKGHNGPVSTLSDKLLGDGSGKIL-ASGGEDATVRLWSLSSSGKRGQQALKATL 254 (501)
Q Consensus 177 ~~~~l~s~~~dg~i~vwd-~~~~~~~~~~h~~~v~~l~~s~~~~~~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 254 (501)
++.-++.++.+..+..|| .++.+.... .++....|+|- .++..+ +.+-..+.+.+||+.+... +.+
T Consensus 45 e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wD----kegdvlavlAek~~piylwd~n~eyt-------qqL 112 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWD----KEGDVLAVLAEKTGPIYLWDVNSEYT-------QQL 112 (615)
T ss_pred CCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhc----cccchhhhhhhcCCCeeechhhhhhH-------HHH
Confidence 555588888899999999 555444443 45556677774 455544 4456678999999987642 222
Q ss_pred c-CCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCc
Q 010784 255 Y-GHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSS 292 (501)
Q Consensus 255 ~-~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 292 (501)
. +-+..-.-+.|++ ....++.+...|.+.+++..+.+
T Consensus 113 E~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred hccCcchHHHHhhcc-CCccccccccccceEEEeccchh
Confidence 2 1111112256775 56667777788899999887654
No 499
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.22 E-value=47 Score=31.57 Aligned_cols=169 Identities=11% Similarity=0.106 Sum_probs=87.2
Q ss_pred ccceecccCCcceeEEEeeccCcCcccccCCCCcCcEEEEeeCCCceEEec-CCce--eeecc-CCCC----ceE-EEEe
Q 010784 144 YYRATLSDHKARITCMRLFPLHETSLFRSEPQRTENVLVTSSCDHSIRLWW-KGSC--QRCFK-GHNG----PVS-TLSD 214 (501)
Q Consensus 144 ~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~--~~~~~-~h~~----~v~-~l~~ 214 (501)
+.++.+..-...|..+-..| ||+.+..-+. .++.|++ ..+. .+.+. ...+ .|+ .+..
T Consensus 211 e~i~~L~~~~~~v~qllL~P-------------dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l 276 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-------------DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL 276 (733)
T ss_pred hhhhhcCCCccchHhhEECC-------------CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH
Confidence 33344444555666677777 7877666554 5677776 1111 11111 1111 122 1111
Q ss_pred eecCCCCCCEEEEeeCCCcEEEE-eccCCCccccccceeeccCCCCceeEEEEeecCCeEEEEEeCCCeEEEEECCCCcc
Q 010784 215 KLLGDGSGKILASGGEDATVRLW-SLSSSGKRGQQALKATLYGHEKPIKLMSVAGHKSFLLVTISKDSKVRVWDTSTSSA 293 (501)
Q Consensus 215 s~~~~~~~~~l~sg~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~s~s~dg~v~vwd~~~~~~ 293 (501)
. ..|..+..++.||.|.-| |.+.+.. .....+..++-...++..+.-. .+.+-+++-+..|++.++.....+.
T Consensus 277 L----~Gg~SLLv~~~dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 277 L----SGGFSLLVVHEDGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred H----hCceeEEEEcCCCceeeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcc
Confidence 1 356678888999999877 5554432 1122233333333444433322 2445566667777777665443322
Q ss_pred ccceecccceecCCCceeeecCCCeEEEEeCCcEEEEEcCCCceEeeeccCCCcEEEEEEcCCCcEEEEEcCCcEEEEec
Q 010784 294 VRSSCCVGMTSVPGVPVDMKCHESMLYIASGSSVVTIDLRTMQKVMTPAICKPILHSFSIMPSKSLICTGGIGKAMTWDI 373 (501)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~i~iwd~ 373 (501)
+- +..--..+.-+++||.+.++++-..++|+++.+
T Consensus 351 lL---------------------------------------------~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l 385 (733)
T COG4590 351 LL---------------------------------------------FERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQL 385 (733)
T ss_pred ee---------------------------------------------hhhhhcCcceeeeCcccchheeecCCceEEEEe
Confidence 11 001112344567788888887776666888777
Q ss_pred CCCC
Q 010784 374 RRSQ 377 (501)
Q Consensus 374 ~~~~ 377 (501)
.+..
T Consensus 386 ~Nr~ 389 (733)
T COG4590 386 ENRN 389 (733)
T ss_pred cCCC
Confidence 6643
No 500
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=70.06 E-value=91 Score=28.74 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=32.9
Q ss_pred CCcEEEEEcC-----Cc-EEEEecCCCCCCCCCCCcccccCcccCeEEEEecCCeEEEEecCCC----cEEEEeCCCcc
Q 010784 356 SKSLICTGGI-----GK-AMTWDIRRSQDAVKPQPMAELDGHVGSVTQLHMDPYKIVTGGRDDL----RINIWETDTGM 424 (501)
Q Consensus 356 ~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~~gs~dg----~i~iwd~~~~~ 424 (501)
++++++.|+. .. +..||+.+.+ ...+..+......-..++...+++++.|+.++ .+.+||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQE----WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCC----eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 5677777763 23 7888887654 22222221111111122233446666665553 35688887654
Done!